Citrus Sinensis ID: 001521
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1061 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.113 | 0.117 | 0.330 | 6e-08 | |
| A8KBH6 | 670 | Protein kinase C beta typ | no | no | 0.098 | 0.155 | 0.314 | 9e-07 | |
| O43374 | 803 | Ras GTPase-activating pro | yes | no | 0.075 | 0.099 | 0.322 | 1e-06 | |
| C9J798 | 803 | Putative Ras GTPase-activ | yes | no | 0.075 | 0.099 | 0.322 | 1e-06 | |
| Q54E35 | 570 | Rho GTPase-activating pro | yes | no | 0.108 | 0.201 | 0.295 | 2e-06 | |
| Q6DN12 | 878 | Multiple C2 and transmemb | no | no | 0.117 | 0.142 | 0.275 | 3e-06 | |
| Q62770 | 2204 | Protein unc-13 homolog C | yes | no | 0.111 | 0.053 | 0.278 | 3e-06 | |
| Q6PFQ7 | 802 | Ras GTPase-activating pro | no | no | 0.081 | 0.107 | 0.297 | 4e-06 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | no | no | 0.111 | 0.053 | 0.278 | 5e-06 | |
| Q8K0T7 | 2210 | Protein unc-13 homolog C | no | no | 0.111 | 0.053 | 0.278 | 5e-06 |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function desciption |
|---|
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
KL V VV+ARNL D +G S PYV + QR +T ++LNP W E F V
Sbjct: 2 KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDD--- 58
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL--IYYPLE-KKSLLSWI 122
D +++ + Y ++F+G++R+S S ++L ++YPL KK
Sbjct: 59 -LNDELVVSVLDEDKY---FNDDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKGSKKD 114
Query: 123 QGEVGLKIYY 132
GE+ LKI +
Sbjct: 115 CGEILLKICF 124
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8KBH6|KPCB_XENTR Protein kinase C beta type OS=Xenopus tropicalis GN=prkcb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 23/127 (18%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNV- 60
L V V DARNL+P D +G S PYV + ++KT T LNPTWNE+ +F +
Sbjct: 170 LTVTVGDARNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPTWNESFKFQLK 229
Query: 61 --GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL 118
K ++ ++++ ++ T+RN+F+G + S+ +K G + L
Sbjct: 230 ESDKDRRLSVEIWDWDL--------TSRNDFMGSLSFGISELLKAGVDGWF-------KL 274
Query: 119 LSWIQGE 125
LS +GE
Sbjct: 275 LSQEEGE 281
|
Calcium-activated and phospholipid-dependent serine/threonine-protein kinase involved in various processes such as regulation of the B-cell receptor (BCR) signalosome, apoptosis and transcription regulation. Plays a key role in B-cell activation and function by regulating BCR-induced NF-kappa-B activation and B-cell suvival. Required for recruitment and activation of the IKK kinase to lipid rafts and mediates phosphorylation of card11/carma1, leading to activate the NF-kappa-B signaling. Involved in apoptosis following oxidative damage: in case of oxidative conditions, specifically phosphorylates isoform p66Shc of shc1, leading to mitochondrial accumulation of p66Shc, where p66Shc acts as a reactive oxygen species producer. Acts as a coactivator of androgen receptor (andr)-dependent transcription, by being recruited to ANDR target genes and specifically mediating phosphorylation of 'Thr-6' of histone H3 (H3T6ph), a specific tag for epigenetic transcriptional activation. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 3 |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV--GKP 63
+L V++AR+L PKD +GTS P+V + Y G+ R+T + P WNE EF + G
Sbjct: 134 RLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEGAM 193
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
+ + ++ ++ +RN+FLG++
Sbjct: 194 EALCVEAWDWDL--------VSRNDFLGKV 215
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Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 10/90 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV--GKP 63
+L V++AR+L PKD +GTS P+V + Y G+ R+T + P WNE EF + G
Sbjct: 134 RLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEGAM 193
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
+ + ++ ++ +RN+FLG++
Sbjct: 194 EALCVEAWDWDL--------VSRNDFLGKV 215
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
| >sp|Q54E35|GACEE_DICDI Rho GTPase-activating protein gacEE OS=Dictyostelium discoideum GN=gacEE PE=3 SV=2 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 11 VVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDM 70
VV +RNL KD +G S P+V+I Q+ +T T + LNP +NEA F++ K Q +
Sbjct: 250 VVKSRNLAAKDLNGKSDPFVIIKAEQQQHRTQTIYKSLNPQFNEAFHFDITK-HQGYVYF 308
Query: 71 FELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKI 130
F ++ + + +F+G + + S G E ++ PL ++ + G++ +KI
Sbjct: 309 F---VWDEDKFKTA---DFMGEVAVPLSLLPPNGSEISLWLPLSPRNSKDKVSGDILIKI 362
Query: 131 YY 132
Y
Sbjct: 363 RY 364
|
Rho GTPase-activating protein involved in the signal transduction pathway. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQV 66
L V+V+ A +LL D G S P+ +++ R +THT ++LNP WN+ F P +
Sbjct: 511 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF----PIKD 566
Query: 67 FTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEV 126
D+ E+ +F + P +FLG++ + ++ G+ Y L+ K L +G +
Sbjct: 567 IHDVLEVTVFDEDGDKPP---DFLGKVAIPLLS-IRDGQPNC--YVLKNKDLEQAFKGVI 620
Query: 127 GLKIYYVDIVPTPPPAAL 144
L++ D++ P A++
Sbjct: 621 YLEM---DLIYNPVKASI 635
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Homo sapiens (taxid: 9606) |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L KD G+S PYV + +R+T T +LNP W+E F
Sbjct: 1211 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1268
Query: 66 VFTDMFELNIFHD--------KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
TD ++ ++ + K + ++FLG+ + E ++Y LEK++
Sbjct: 1269 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTL---SGEMDVWYNLEKRT 1323
Query: 118 LLSWIQGEVGLKI 130
S + G + LKI
Sbjct: 1324 DKSAVSGAIRLKI 1336
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 15/101 (14%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV--GKP 63
+L V++AR+L PKD +G S P+V + Y G+ ++T + P WNE +F + G
Sbjct: 134 RLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKGAS 193
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRI-----RLSSSQ 99
+ + ++ ++ +RN+FLG++ RL S+Q
Sbjct: 194 EALLVEAWDWDL--------VSRNDFLGKVAVNVQRLCSAQ 226
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14. Mus musculus (taxid: 10090) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L KD G+S PYV + +R+T T +LNP W+E F
Sbjct: 1221 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1278
Query: 66 VFTDMFELNIFHD--------KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
TD ++ ++ + K + ++FLG+ + E ++Y LEK++
Sbjct: 1279 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTL---SGEMDVWYNLEKRT 1333
Query: 118 LLSWIQGEVGLKI 130
S + G + LKI
Sbjct: 1334 DKSAVSGAIRLKI 1346
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May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
| >sp|Q8K0T7|UN13C_MOUSE Protein unc-13 homolog C OS=Mus musculus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L KD G+S PYV + +R+T T +LNP W+E F
Sbjct: 1217 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFFFECHNS-- 1274
Query: 66 VFTDMFELNIFHD--------KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
TD ++ ++ + K + ++FLG+ + E ++Y LEK++
Sbjct: 1275 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTL---SGEMDVWYNLEKRT 1329
Query: 118 LLSWIQGEVGLKI 130
S + G + LKI
Sbjct: 1330 DKSAVSGAIRLKI 1342
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1061 | ||||||
| 255569512 | 1074 | conserved hypothetical protein [Ricinus | 0.967 | 0.956 | 0.683 | 0.0 | |
| 224123728 | 1040 | predicted protein [Populus trichocarpa] | 0.967 | 0.986 | 0.686 | 0.0 | |
| 297807817 | 1053 | C2 domain-containing protein [Arabidopsi | 0.957 | 0.964 | 0.654 | 0.0 | |
| 15238697 | 1049 | C2 calcium/lipid-binding and phosphoribo | 0.966 | 0.977 | 0.658 | 0.0 | |
| 225439291 | 1052 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.988 | 0.658 | 0.0 | |
| 449462788 | 1057 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.958 | 0.592 | 0.0 | |
| 449518210 | 1043 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.966 | 0.982 | 0.607 | 0.0 | |
| 356547535 | 1009 | PREDICTED: uncharacterized protein LOC10 | 0.723 | 0.761 | 0.707 | 0.0 | |
| 224140395 | 1053 | predicted protein [Populus trichocarpa] | 0.930 | 0.937 | 0.478 | 0.0 | |
| 224090973 | 1023 | predicted protein [Populus trichocarpa] | 0.691 | 0.717 | 0.547 | 0.0 |
| >gi|255569512|ref|XP_002525723.1| conserved hypothetical protein [Ricinus communis] gi|223535023|gb|EEF36706.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1486 bits (3848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1108 (68%), Positives = 858/1108 (77%), Gaps = 81/1108 (7%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
MA QKLIVEVVDARNLLPKDGHGTSSPYV ID+YGQR++T TA+RDLNPTWNE LEFNV
Sbjct: 1 MAKNQKLIVEVVDARNLLPKDGHGTSSPYVTIDFYGQRKRTQTAIRDLNPTWNEVLEFNV 60
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS 120
GKP VF D+ EL++ HDK YGPT RN LGRIRLSS QFV+KGEEALIYYPLEKK L S
Sbjct: 61 GKPSNVFDDILELDVCHDKNYGPTRRNVHLGRIRLSSGQFVRKGEEALIYYPLEKKYLFS 120
Query: 121 WIQGEVGLKIYYVDIVPTPPPAAL---------APVPQPDPPAKEVKPDPTVEAKAEAAK 171
WIQGE+GL+IYY D PPP A PA+E + A AE K
Sbjct: 121 WIQGEIGLRIYYQDEAIPPPPPPPPAPPAEEAKADANAGSSPAEEKLSE---TAPAEGEK 177
Query: 172 PNEEPAADHEAKVDAEAVPA----------------------PENKEPAGDIEPQCDTSS 209
+ P ++ ++D + P E + P
Sbjct: 178 SEKPPESETTKELDNKEPPKEEPPAEPAAEAPPADNAPAPIQAEKPPESDPPPPPPTPPP 237
Query: 210 APEQVQANEEQARQQPSMQEQSGH-IEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEVK 268
A + +ANE Q PS + G I + T + GP A+P +MAASVSGSVPE+K
Sbjct: 238 AEAKSEANESQG--DPSAAQADGDDIVLEPTGNNLGPSPTASP--EIMAASVSGSVPEIK 293
Query: 269 VTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMS-TASFASDITDNIPIERSS 327
V AG IN P PI+R + T ++ + ++I IERSS
Sbjct: 294 V-----------------------AG---INAPHPITRPAAPTTNYILEPQESISIERSS 327
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDS 387
FDLVEKMHYLFVRVVKA+ LPT G+P+VKI + +RV S+PAR+T FEWDQTFAFGRD+
Sbjct: 328 FDLVEKMHYLFVRVVKAKGLPTNGNPIVKIVASGNRVLSRPARKTGFFEWDQTFAFGRDA 387
Query: 388 PESSSFLEVSVWDP----PRG--DVAAPPG-FLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
PESSS LEVSVWDP PR D+AA FLGGICFDVTEIPLRDPPDSPLAPQWY +
Sbjct: 388 PESSSILEVSVWDPLSMDPRKQYDLAAEGAKFLGGICFDVTEIPLRDPPDSPLAPQWYML 447
Query: 441 EGGGAYS----GDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVI 496
EGG ++ G+LMLATWVGTQAD++FPDAWKTDTAGNVNS+AKVY+SPKLWYLRATV+
Sbjct: 448 EGGETHNSVMLGNLMLATWVGTQADEAFPDAWKTDTAGNVNSRAKVYLSPKLWYLRATVL 507
Query: 497 EAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSF 556
EAQDI+P VA +KE+SF IKAQLGFQ QKTK +VTRNG PSWNEDL FVAAEPF+D L F
Sbjct: 508 EAQDIIP-VAHIKESSFQIKAQLGFQAQKTKPTVTRNGNPSWNEDLPFVAAEPFSDHLIF 566
Query: 557 TLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFD 616
TLENRQ KG V +G+ R+PL AVERRVDDRKVA+RWF+FE+ EK AYKGR+ L+LCFD
Sbjct: 567 TLENRQPKGHVTIGIARIPLAAVERRVDDRKVAARWFSFEDPKSEKVAYKGRIQLKLCFD 626
Query: 617 GGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK 676
GGYHVMDE A+VCSDYRPTARQLWKPPVGTVELG+I CKNLLPMKTV+GKS TD+Y VAK
Sbjct: 627 GGYHVMDETANVCSDYRPTARQLWKPPVGTVELGIIACKNLLPMKTVDGKSCTDSYCVAK 686
Query: 677 YASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSME---TTRP 733
Y KW+RTRTV DSL+P+WNEQYTWKV+DP TVL +GVFDSWG+FE + S TRP
Sbjct: 687 YGPKWVRTRTVCDSLDPKWNEQYTWKVFDPSTVLTIGVFDSWGLFESSSSSGGEKTATRP 746
Query: 734 DCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYS 793
D RIGK+RIRISTLETGKVYRN+YPL LL SNG+ KMGEIE+AVRF+RT+PTLDFLHVYS
Sbjct: 747 DSRIGKIRIRISTLETGKVYRNSYPLNLLSSNGVKKMGEIEIAVRFVRTTPTLDFLHVYS 806
Query: 794 QPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRK 853
QPL+PLMHHI P+G+VQQEMLRS VKI+A HL+RSEPPLRRE VL MLDADSHAFSMRK
Sbjct: 807 QPLMPLMHHINPIGVVQQEMLRSTTVKILATHLSRSEPPLRREVVLYMLDADSHAFSMRK 866
Query: 854 VRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVF 913
VRANWFRIINV+AGV+DI+RW DDTR WKNPTAT+LVHALLVMLVWFPDLIVPTLAFYVF
Sbjct: 867 VRANWFRIINVIAGVLDIVRWIDDTRVWKNPTATLLVHALLVMLVWFPDLIVPTLAFYVF 926
Query: 914 VIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLG 973
IG WNYRFR RDPLPHFDPKISLAD+++R+ELDEEFDT+PS+R + VRARYDKLRTLG
Sbjct: 927 AIGAWNYRFRSRDPLPHFDPKISLADSVDREELDEEFDTLPSSRSADTVRARYDKLRTLG 986
Query: 974 ARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYL 1033
RVQ +LGD A QGERVQALVTWRDPRATGIFVGLCF VAMILYLVPSKMVAMAFGFYY
Sbjct: 987 VRVQKILGDLATQGERVQALVTWRDPRATGIFVGLCFAVAMILYLVPSKMVAMAFGFYYF 1046
Query: 1034 RHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
RHP+FRD+MPSPALNFFRRLPSLSDRIM
Sbjct: 1047 RHPIFRDQMPSPALNFFRRLPSLSDRIM 1074
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123728|ref|XP_002319150.1| predicted protein [Populus trichocarpa] gi|222857526|gb|EEE95073.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/1075 (68%), Positives = 849/1075 (78%), Gaps = 49/1075 (4%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
M QKLIVEVVDARNLLPKDGHG+SSPYVVID+YGQR++T +A+RDLNPTWNE LEFNV
Sbjct: 1 MGTKQKLIVEVVDARNLLPKDGHGSSSPYVVIDFYGQRKRTKSAIRDLNPTWNETLEFNV 60
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS 120
GKP VF DM EL+++HDK YGPT R N LGRIRLSSSQFV+KGEEALIYYPLEKK L S
Sbjct: 61 GKPSNVFGDMLELDVYHDKNYGPTRRINHLGRIRLSSSQFVRKGEEALIYYPLEKKYLFS 120
Query: 121 WIQGEVGLKIYYVDIVPTPPPAALAPVPQP------DPPAKEVKPDPTVEAKAEAAKPNE 174
W QGE+GL+IYY D V PPP P D + P PT EA A A
Sbjct: 121 WTQGEIGLRIYYQDEVTPPPPPPPQPAAAREEEAKADTNQESSPPQPTAEAAAPAESEAT 180
Query: 175 EPAADHEAKVDAEAVPAPENKEPAGDIEPQCDTSSAPEQVQANEEQARQ----QPSMQEQ 230
+PA ++ V+ A ++PA + + + + E A QP+ QE
Sbjct: 181 QPAEAQKSDVETGATTESNKEQPAEEAKSNEEPPAQAEAAAAPPPSDNAPAPIQPA-QED 239
Query: 231 SGHIEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFAS 290
I + T K GP P ++AAS +GS PE+KV+
Sbjct: 240 GDGIVLEPTFRKWGPAPP-----EIVAAS-TGSFPEIKVSG------------------- 274
Query: 291 ATAGNIPINGPQPISRTMS-TASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPT 349
IN PQPI R ++ T+++ + ++I IERS+FDLVEKMHYLFVRVVKAR+LPT
Sbjct: 275 -------INAPQPIIRPVAPTSNYTLEPQESISIERSAFDLVEKMHYLFVRVVKARYLPT 327
Query: 350 KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDP---PRGDV 406
G+PVV+I V+NSRV+SKPAR+T CFEWDQTFAFGRD+P+SSS +E+SVWDP ++
Sbjct: 328 SGNPVVRIEVSNSRVQSKPARKTLCFEWDQTFAFGRDAPDSSSIVEISVWDPHDPKSSEM 387
Query: 407 AAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPD 466
AA FLGGICFDVTEIPLRDPPDSPLAPQWYR+EGGGAY DLMLATWVGTQADDSFPD
Sbjct: 388 AAAANFLGGICFDVTEIPLRDPPDSPLAPQWYRLEGGGAYRSDLMLATWVGTQADDSFPD 447
Query: 467 AWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKT 526
AWKTDTAGN+NS+AKVY+SPKLWYLRATV+EAQDI P + LKE + +KAQLGFQVQKT
Sbjct: 448 AWKTDTAGNINSRAKVYLSPKLWYLRATVLEAQDIFP-LMPLKETAVQVKAQLGFQVQKT 506
Query: 527 KVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDR 586
K SV+RNGTPSWNEDLLFVAAEP +DQL FTLENRQ KG V +G+ R+ L+A ERRVDDR
Sbjct: 507 KTSVSRNGTPSWNEDLLFVAAEPCSDQLIFTLENRQPKGPVTIGMVRIALSATERRVDDR 566
Query: 587 KVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGT 646
KVASRWF+ E+ EK Y+GRV LRLCFDGGYHVMDEAAH+ SDYRPTARQLWK PVGT
Sbjct: 567 KVASRWFSLEDPRSEKAGYRGRVQLRLCFDGGYHVMDEAAHMSSDYRPTARQLWKQPVGT 626
Query: 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP 706
ELG+IGCKNL PMKTV+GK TDAY VAKY KW+RTRTV DSL+P+WNEQYTWKVYDP
Sbjct: 627 FELGIIGCKNLSPMKTVDGKGCTDAYCVAKYGPKWVRTRTVCDSLDPKWNEQYTWKVYDP 686
Query: 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG 766
CTVL +GVFDS G++E +G TRPD R+GKVR+R+S LETGKVYRN YPL+LL +NG
Sbjct: 687 CTVLTIGVFDSSGVYE-IDGDKTATRPDFRMGKVRVRLSNLETGKVYRNRYPLILLTNNG 745
Query: 767 MTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHL 826
+ KMGEIEVAV+F+R +PTLDFLHVY+QPLLPLMHH+KPLG+VQQE+LR+ AVKIIA HL
Sbjct: 746 VKKMGEIEVAVKFVRATPTLDFLHVYTQPLLPLMHHLKPLGVVQQELLRNSAVKIIATHL 805
Query: 827 ARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTA 886
+RSEP LRRE V MLD D+HAFSMRK+RANW RIINV+A VIDI+RW DDTR WKNPT+
Sbjct: 806 SRSEPSLRREVVSYMLDVDTHAFSMRKIRANWIRIINVIASVIDIVRWIDDTRVWKNPTS 865
Query: 887 TILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDEL 946
T+LVHALL+MLVWFPDLIVPTLAFYVFVIG WNYRFR R PLPHFDPK+SLAD+ +RDEL
Sbjct: 866 TVLVHALLIMLVWFPDLIVPTLAFYVFVIGAWNYRFRSRAPLPHFDPKLSLADSADRDEL 925
Query: 947 DEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFV 1006
DEEFD +PS+RP E+VR RYDK+R LGARVQT+LGDFA QGER+QALVTWRDPRATGIFV
Sbjct: 926 DEEFDPLPSSRPPEMVRTRYDKMRMLGARVQTVLGDFATQGERLQALVTWRDPRATGIFV 985
Query: 1007 GLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
GLCFVVAMILY+VPSKMVAMA GFY RHP+FRDRMPSPALNFFRRLPSLSDRIM
Sbjct: 986 GLCFVVAMILYMVPSKMVAMASGFYVFRHPIFRDRMPSPALNFFRRLPSLSDRIM 1040
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807817|ref|XP_002871792.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317629|gb|EFH48051.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1453 bits (3762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1098 (65%), Positives = 845/1098 (76%), Gaps = 82/1098 (7%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
MA +KL+VEVVDA++L PKDGHGTSSPYV++DYYGQRR+T T VRDLNP WNE LEF++
Sbjct: 1 MATTRKLVVEVVDAKDLTPKDGHGTSSPYVIVDYYGQRRRTRTIVRDLNPVWNETLEFSL 60
Query: 61 GKPP--QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL 118
K P Q+F D+ EL+++HDK +G T RNNFLGRIRL QFV KGEEALIYYPLEKKSL
Sbjct: 61 AKRPSHQLFADVLELDMYHDKNFGQTRRNNFLGRIRLGPDQFVGKGEEALIYYPLEKKSL 120
Query: 119 LSWIQGEVGLKIYYVDIVPTPPPAALAPV---------------PQPDPPAKEVKPDPT- 162
+ +QGE+GL++YY D P P +AP+ P P E DP
Sbjct: 121 FNLVQGEIGLRVYYADEKPPPLKPTVAPLETVVEEKTEETMADGPDKSQPPPETNDDPAE 180
Query: 163 -------------VEAKAEAAKPNEE--PAADHEAKVDAEAVPAPENKEPAGDIEPQCDT 207
+ AE KPNEE P V E P EP + P+ D
Sbjct: 181 VKETPEPPQPPPEENSPAEGLKPNEEASPPLQENVTVGGEE---PAASEPT--LPPESDK 235
Query: 208 SSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEV 267
+ A V+ EE + QP ++ + + S + AP +P + +++ SVSGS+PE+
Sbjct: 236 NKA--DVKPVEEPPQNQPDGED----VVLESEDSMSWASAPRSP-EVIISRSVSGSIPEI 288
Query: 268 KVTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMS-TASFASDITDNIPIERS 326
K NGPQP+ R++S TAS+ S+I+D IERS
Sbjct: 289 K------------------------------NGPQPLRRSISETASYTSEISDVSTIERS 318
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRD 386
+FDLVEKMHY+FVRVVKAR LPT GSP+ KI+++ + ++SKPAR+TSCFEWDQTFAF RD
Sbjct: 319 TFDLVEKMHYVFVRVVKARSLPTSGSPITKISLSGTMIQSKPARKTSCFEWDQTFAFLRD 378
Query: 387 SPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGG 444
SP+ SS LE+SVWD G + FLGGICFDV+EIPLRDPPDSPLAPQWYR+EGGG
Sbjct: 379 SPDLSSSPILEISVWDSSTGFETS--QFLGGICFDVSEIPLRDPPDSPLAPQWYRLEGGG 436
Query: 445 AYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPP 504
A++ DLMLATW GTQAD+SFPDAWKTDTAGNV ++AKVY+S KLWYLRA VIEAQD+LPP
Sbjct: 437 AHNSDLMLATWTGTQADESFPDAWKTDTAGNVTARAKVYMSSKLWYLRAAVIEAQDLLPP 496
Query: 505 -VAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH 563
+ KEASF +KAQLGFQVQKTK +VTRNG PSWNEDLLFVAAEPF+DQL FTLE R
Sbjct: 497 QLTEFKEASFQLKAQLGFQVQKTKSAVTRNGAPSWNEDLLFVAAEPFSDQLVFTLEYRTS 556
Query: 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMD 623
KG V +G+ RVPLT++ERRVDDR VASRWF FE+ NDEKR + RVHLRLCFDGGYHVMD
Sbjct: 557 KGPVTVGMARVPLTSIERRVDDRLVASRWFGFEDPNDEKRGNRSRVHLRLCFDGGYHVMD 616
Query: 624 EAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIR 683
EA HVCSDYRPTARQLWKP VG VELGVIGCKNLLPMKTVNGK +TDAY VAKY +KW+R
Sbjct: 617 EAVHVCSDYRPTARQLWKPAVGIVELGVIGCKNLLPMKTVNGKGSTDAYTVAKYGTKWVR 676
Query: 684 TRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIR 743
TRTVSDSL+P+WNEQYTWKVYDPCTVL +GVFDSWG+FE + G E TR D RIGKVRIR
Sbjct: 677 TRTVSDSLDPKWNEQYTWKVYDPCTVLTIGVFDSWGVFEIDGGK-EATRQDLRIGKVRIR 735
Query: 744 ISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHI 803
ISTLETGK YRNTYPLL+L + G+ K+GEIE+AVRF+R++P LDFLHVY+QPLLPLMHHI
Sbjct: 736 ISTLETGKAYRNTYPLLMLVNGGVKKLGEIELAVRFVRSAPPLDFLHVYTQPLLPLMHHI 795
Query: 804 KPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIIN 863
KPL ++Q+EMLR+ AVKI+AAHL+RSEPPLR E V MLDADSH FSMRKVRANW RI+N
Sbjct: 796 KPLSLIQEEMLRNAAVKILAAHLSRSEPPLRPEIVRYMLDADSHTFSMRKVRANWLRIVN 855
Query: 864 VLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFR 923
V+AG++DI+RW DDTR WKNPT+T+LVHAL+VML+WFPDLIVPTLAFY+FVIG WNYRFR
Sbjct: 856 VVAGMVDIVRWVDDTRFWKNPTSTLLVHALVVMLIWFPDLIVPTLAFYLFVIGAWNYRFR 915
Query: 924 KRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDF 983
R LPHFDP++SLAD +R+ELDEEFD VPS RP E+VR RYDKLR +GARVQT+LG+
Sbjct: 916 SRAALPHFDPRLSLADAADREELDEEFDVVPSNRPPEMVRLRYDKLRNVGARVQTILGEV 975
Query: 984 AAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMP 1043
AAQGE++QALVTWRDPRATGIFVGLC VA++LYLVP+KMVAMA GFYY RHP+FRDR P
Sbjct: 976 AAQGEKMQALVTWRDPRATGIFVGLCLFVALVLYLVPTKMVAMASGFYYFRHPIFRDRKP 1035
Query: 1044 SPALNFFRRLPSLSDRIM 1061
SP LNFFRRLPSLSDR+M
Sbjct: 1036 SPVLNFFRRLPSLSDRLM 1053
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238697|ref|NP_197299.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] gi|9757890|dbj|BAB08397.1| phosphoribosylanthranilate transferase-like protein [Arabidopsis thaliana] gi|332005109|gb|AED92492.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1446 bits (3742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 715/1085 (65%), Positives = 843/1085 (77%), Gaps = 60/1085 (5%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
MA +KL+VEVVDA++L PKDGHGTSSPYVV+DYYGQRR+T T VRDLNP WNE LEF++
Sbjct: 1 MATTRKLVVEVVDAKDLTPKDGHGTSSPYVVLDYYGQRRRTRTIVRDLNPVWNETLEFSL 60
Query: 61 GKPP--QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL 118
K P Q+FTD+ EL+++HDK +G T RNNFLGRIRL S QFV +GEEALIYYPLEKKSL
Sbjct: 61 AKRPSHQLFTDVLELDMYHDKNFGQTRRNNFLGRIRLGSDQFVGQGEEALIYYPLEKKSL 120
Query: 119 LSWIQGEVGLKIYYVDIVPTPPPAALAPVPQ-------------PD----PPAKEVKPDP 161
+ +QGE+GL++YY D P P +AP+ PD PP P
Sbjct: 121 FNLVQGEIGLRVYYADEKPPPLKPTVAPLETVVEEKTEETKAEGPDESKPPPETNDIPAE 180
Query: 162 TVEAKAEAAKPNEEPAADHEAKVDAEAVP-APENKEPAGDIEPQCDTSSAPEQVQANEEQ 220
E P EE + K D EA P EN G+ P ++ + + EE
Sbjct: 181 VKETVKPPQPPPEESSPAEGPKPDEEASPPLQENATVGGEEPPASESDKNEAEAKPVEEP 240
Query: 221 ARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPIS 280
+ QP ++ E D + + P++P + +++ SVSGS+PE K
Sbjct: 241 PQNQPDGEDIVLESE-DTMSWASAPRSPLP--EVIISRSVSGSIPETK------------ 285
Query: 281 RSASMASFASATAGNIPINGPQPISRTMS-TASFASDITDNIPIERSSFDLVEKMHYLFV 339
NGPQP+ R++S TAS+ S+I+D IERS+FDLVEKMHY+F+
Sbjct: 286 ------------------NGPQPLRRSVSETASYTSEISDVSTIERSTFDLVEKMHYVFI 327
Query: 340 RVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE--SSSFLEVS 397
RVVKAR LPT GSPV KI+++ + ++SKPAR+TSCFEWDQTFAF RDSP+ SS LE+S
Sbjct: 328 RVVKARSLPTSGSPVTKISLSGTMIQSKPARKTSCFEWDQTFAFLRDSPDLSSSPILEIS 387
Query: 398 VWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVG 457
VWD G + FLGGICFDV+EIPLRDPPDSPLAPQWYR+EGGGA++ DLMLATW G
Sbjct: 388 VWDSSTGIETS--QFLGGICFDVSEIPLRDPPDSPLAPQWYRLEGGGAHNSDLMLATWTG 445
Query: 458 TQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPP-VAALKEASFTIK 516
TQAD+SFPDAWKTDTAGNV ++AKVY+S KLWYLRATVIEAQD+LPP + A KEASF +K
Sbjct: 446 TQADESFPDAWKTDTAGNVTARAKVYMSSKLWYLRATVIEAQDLLPPQLTAFKEASFQLK 505
Query: 517 AQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPL 576
AQLG QVQKTK +VTRNG PSWNEDLLFVAAEPF+DQL FTLE R KG V +G+ RVPL
Sbjct: 506 AQLGSQVQKTKSAVTRNGAPSWNEDLLFVAAEPFSDQLVFTLEYRTSKGPVTVGMARVPL 565
Query: 577 TAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTA 636
+A+ERRVDDR VASRW E+ NDEKR + RVH+RLCFDGGYHVMDEAAHVCSDYRPTA
Sbjct: 566 SAIERRVDDRLVASRWLGLEDPNDEKRGNRSRVHIRLCFDGGYHVMDEAAHVCSDYRPTA 625
Query: 637 RQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWN 696
RQLWKP VG VELG+IGCKNLLPMKTVNGK +TDAY VAKY SKW+RTRTVSDSL+P+WN
Sbjct: 626 RQLWKPAVGIVELGIIGCKNLLPMKTVNGKGSTDAYTVAKYGSKWVRTRTVSDSLDPKWN 685
Query: 697 EQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNT 756
EQYTWKVYDPCTVL +GVFDSWG++E + G E TR D RIGKVRIRISTLETGK YRNT
Sbjct: 686 EQYTWKVYDPCTVLTIGVFDSWGVYEVDGGK-EATRQDLRIGKVRIRISTLETGKAYRNT 744
Query: 757 YPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRS 816
YPLL+L + G+ K+GEIE+AVRF+RT+P LDFLHVY+QPLLPLMHHIKPL + Q++MLR+
Sbjct: 745 YPLLMLVNGGVKKLGEIELAVRFVRTAPPLDFLHVYTQPLLPLMHHIKPLSLFQEDMLRN 804
Query: 817 GAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWAD 876
AVKI+AAHL+RSEPPLR E V MLDAD+H FSMRKVRANW RI+NV+AG++D++RW D
Sbjct: 805 TAVKILAAHLSRSEPPLRPEIVRYMLDADTHTFSMRKVRANWLRIVNVVAGMVDVVRWVD 864
Query: 877 DTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKIS 936
DTR WKNPT+T+LVHAL+VML+WFPDLIVPTLAFY+FVIG WNYRFR R LPHFDP++S
Sbjct: 865 DTRFWKNPTSTLLVHALVVMLIWFPDLIVPTLAFYLFVIGAWNYRFRSRAALPHFDPRLS 924
Query: 937 LADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTW 996
LAD +RDELDEEFD VPS RP E+VR RYDKLR +GARVQT+LG+ AAQGE++QALVTW
Sbjct: 925 LADAADRDELDEEFDVVPSNRPPEMVRLRYDKLRNVGARVQTILGEVAAQGEKMQALVTW 984
Query: 997 RDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSL 1056
RDPRATGIFVGLCF VA++LYLVP+KMVAMA GFYY RHP+FRDR PSP LNFFRRLPSL
Sbjct: 985 RDPRATGIFVGLCFFVALVLYLVPTKMVAMASGFYYFRHPIFRDRKPSPVLNFFRRLPSL 1044
Query: 1057 SDRIM 1061
SDR+M
Sbjct: 1045 SDRLM 1049
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439291|ref|XP_002266956.1| PREDICTED: uncharacterized protein LOC100249668 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1337 bits (3460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1073 (65%), Positives = 824/1073 (76%), Gaps = 33/1073 (3%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
MA I+KLIVEVVD RNLLPKDG GTSSPY ++D+ GQR++T T VRDLNPTWNE LEFNV
Sbjct: 1 MATIRKLIVEVVDGRNLLPKDGQGTSSPYAIVDFCGQRKRTKTVVRDLNPTWNEVLEFNV 60
Query: 61 GKPP-QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL 119
++F D E+++ HD+ YGPT RNN LGRIRLSS QFVKKGEEALIY+PLEKKS
Sbjct: 61 ASGALELFGDTIEVDVLHDRNYGPTRRNNCLGRIRLSSRQFVKKGEEALIYFPLEKKSFF 120
Query: 120 SWIQGEVGLKIYYVDIVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAAD 179
SW QG++G KIYYVD VP P +EVKP V A + + PAA
Sbjct: 121 SWTQGDIGFKIYYVD----------EEVPSQPPVLEEVKPPEAVPPPAADSGTTDAPAA- 169
Query: 180 HEAKVDAEAVPAPENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLT 239
EAVP P EPA P+ P ++P+ ++ E +
Sbjct: 170 --PPPKTEAVP-PAEPEPAASDPPKSSEEQPPAPPPVEAAPPAEEPAPPSENPTPEAEKQ 226
Query: 240 TSKAGPKAPAAPSDHVMAAS---VSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNI 296
P P + M A V S E + P P P MAS + +A +
Sbjct: 227 PESEPPPPPQEGTQDKMEACPPDVEQSNAETEAPVPKWVPSP----QVMASIENRSAPQV 282
Query: 297 PINGPQPISRTMSTASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPTKGSPVVK 356
+P+ R +S+ +F +D+ + IER+SFDLVEKMHY+FVRVVKAR LPTKG+PVV
Sbjct: 283 KFAPFEPVHRPLSSGNFKADLRGTVSIERTSFDLVEKMHYIFVRVVKARSLPTKGNPVVT 342
Query: 357 IAVANSRVESKPA-RRTSCFEWDQTFAFGRDSPESSSFLEVSVWDP---PRGDVAAPPGF 412
IAV+ S V SKPA + TS FEWDQTFAFGR++PES+S LEVSVWDP DVA GF
Sbjct: 343 IAVSGSHVSSKPALKSTSFFEWDQTFAFGRETPESTSLLEVSVWDPRPSNPSDVAGD-GF 401
Query: 413 LGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAWKTDT 472
LGGICFDV EIPLRDPPDSPLAPQWYR+EGG A +G LMLATW+GTQAD+SFP+AW TD
Sbjct: 402 LGGICFDVAEIPLRDPPDSPLAPQWYRIEGGAADNGVLMLATWIGTQADESFPEAWITDA 461
Query: 473 AGNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTR 532
AG+V+SK+KVY SPKLWYLR TV+EAQD+LP + +LK+ S + +LGFQ+QKTKVSVTR
Sbjct: 462 AGSVHSKSKVYQSPKLWYLRITVMEAQDVLP-LTSLKDLSLQLTVKLGFQIQKTKVSVTR 520
Query: 533 NGTPSWNEDLLFVAAEPFT-DQLSFTLENRQHKGSVA-LGVTRVPLTAVERRVDDRKVAS 590
NGTP WN+DL+FVAAEPFT + L FTLE++Q KG VA LGV RVPLTA+ERRVDDR S
Sbjct: 521 NGTPLWNQDLMFVAAEPFTHEHLIFTLESQQTKGKVATLGVARVPLTAIERRVDDRTPVS 580
Query: 591 RWFTFENTN--DEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVE 648
WF+F+N N +E+ +YKGRVHLRLCFDGGYHVMDEAAHVCSD+RPTARQLWKPP+GTVE
Sbjct: 581 HWFSFQNPNKEEERSSYKGRVHLRLCFDGGYHVMDEAAHVCSDFRPTARQLWKPPIGTVE 640
Query: 649 LGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCT 708
LG+I CKNLLPMKT++G+ +TDAY VAKY KW+RTRTVS+SL+P+WNEQYTWKVYDPCT
Sbjct: 641 LGIIACKNLLPMKTIDGRGSTDAYAVAKYGPKWVRTRTVSESLDPKWNEQYTWKVYDPCT 700
Query: 709 VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMT 768
VL++GVFDS F+ E GS E T PD R+GKVRIRISTL+TG+VY+N YPLLLL G
Sbjct: 701 VLSVGVFDSSAAFQIE-GSKEATHPDFRMGKVRIRISTLQTGRVYKNRYPLLLLSPAGKK 759
Query: 769 KMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLAR 828
+MGEIE+AVRF+R TLD LHVYSQPLLPLMHHIKPLG+VQQE+LR+ A KI+A HL+R
Sbjct: 760 QMGEIELAVRFVRAVHTLDILHVYSQPLLPLMHHIKPLGVVQQEILRNTAAKIVAEHLSR 819
Query: 829 SEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATI 888
SEPPLRRE VL MLDAD+ AFSMRKVRANW RIINV+AGVIDI+RW DDTRSWKNPTATI
Sbjct: 820 SEPPLRREIVLYMLDADTQAFSMRKVRANWIRIINVVAGVIDIVRWVDDTRSWKNPTATI 879
Query: 889 LVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDE 948
LVHALLV+LVWFPDLI PTL+FYVF IG WNYRF+ R+PLPHF PKIS+ + ++R+ELDE
Sbjct: 880 LVHALLVLLVWFPDLIFPTLSFYVFAIGAWNYRFKSREPLPHFCPKISMVEAVDREELDE 939
Query: 949 EFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGL 1008
EFDTVPS+R E V ARYDKLRTLGARVQT+LGD A QGERVQALV WRDPRATGIFVGL
Sbjct: 940 EFDTVPSSRSPERVLARYDKLRTLGARVQTVLGDAATQGERVQALVMWRDPRATGIFVGL 999
Query: 1009 CFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
C VVA++LYLVPSKMVAMA GFYY+RHPMFRDR PSPA NFFRRLPSLSDR+M
Sbjct: 1000 CLVVAVVLYLVPSKMVAMAGGFYYMRHPMFRDRAPSPAFNFFRRLPSLSDRMM 1052
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462788|ref|XP_004149122.1| PREDICTED: uncharacterized protein LOC101222743 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1325 bits (3430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/1097 (59%), Positives = 798/1097 (72%), Gaps = 84/1097 (7%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
++KLIVEVVDARNLLPKDGHG+SSPY+V+DYYGQR++T T V DLNPTWNE LEFNVG P
Sbjct: 6 LRKLIVEVVDARNLLPKDGHGSSSPYIVVDYYGQRKRTRTIVHDLNPTWNEVLEFNVGPP 65
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQ 123
VF D+ EL++ HD++YGPT RNNFLGRIRLSS+QFVKKGEEALIY+ LEKKSL SWIQ
Sbjct: 66 SSVFGDVLELDVIHDRSYGPTRRNNFLGRIRLSSTQFVKKGEEALIYFRLEKKSLFSWIQ 125
Query: 124 GEVGLKIYYVDIV----------------PTPPPAAL----APVPQPDPPAKEVKPDPTV 163
GE+GLKIYY D V PT A+ P +P+ KE KP+P
Sbjct: 126 GEIGLKIYYSDCVTPARVEEGDAINTVEQPTTEGDAINTVDQPTTEPELKPKEQKPEPDS 185
Query: 164 EAKAEAAKPNEE--PAADHEAKVDAEAVPAPENKEPAGDIEPQCDT-----SSAPEQVQA 216
E K ++ D A ++ + P EN G+ P+ +T S++P ++
Sbjct: 186 ELKQSPLLEQQDVTQQTDELASIEGQIAPTTENLADKGNAAPEVETLGVESSTSPTEIPT 245
Query: 217 NEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSP 276
P+++ S + + G +AP S S
Sbjct: 246 --------PAVETVSSETHPPVEAMEQGREAPPKTS--------------------SEEK 277
Query: 277 QPISRSASMASFASATAGNIPIN-GPQPISRTMSTASFASDITDNIPIERSSFDLVEKMH 335
QP + S A IN PQPI R+M S+ + T++ +E+S+FDLVEKMH
Sbjct: 278 QPTAESKEEAE----------INLTPQPIKRSMPIPSYTLEATESRTMEQSTFDLVEKMH 327
Query: 336 YLFVRVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLE 395
YLFVRVVKAR L T P+V+I R++S PAR+++ FEWDQTFAF R + +S+S +E
Sbjct: 328 YLFVRVVKARSLATNSHPIVQIEAFGKRIKSNPARKSNVFEWDQTFAFSRGAADSASMME 387
Query: 396 VSVWDPPRGDVAAPP-----GFLGGICFDVTEIPLRDPPDSPLAPQWYRME---GGGAYS 447
+SVWD D +P FLGG+C DV++I LRDPPDSPLAPQWYR+E A+
Sbjct: 388 ISVWDGKVNDAVSPTDVDGRNFLGGLCLDVSDILLRDPPDSPLAPQWYRLERERNDAAFG 447
Query: 448 GDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAA 507
G LMLATW+GTQADD+FP+AWKTD GN NS+AK+Y SPK+WYLRATVIEAQD++P + A
Sbjct: 448 GYLMLATWIGTQADDAFPNAWKTDAGGNFNSRAKIYQSPKMWYLRATVIEAQDVVP-ITA 506
Query: 508 LKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLEN-RQHKGS 566
+KEA F +KAQLGFQV TK VTRNG PSWN+DL FVAAEP TD L FT+E+ R K
Sbjct: 507 VKEALFQVKAQLGFQVSVTKPVVTRNGAPSWNQDLFFVAAEPMTDHLIFTVESPRSSKSP 566
Query: 567 VALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEK-RAYKGRVHLRLCFDGGYHVMDEA 625
+GV ++PLT +ERRVDDRKV +RW T DEK +Y GR+ LRLCFDGGYHVMDEA
Sbjct: 567 TVIGVVKIPLTDIERRVDDRKVTARWCTLAGVVDEKGSSYTGRIQLRLCFDGGYHVMDEA 626
Query: 626 AHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMK-TVNGKSTTDAYVVAKYASKWIRT 684
AHV SDYRPTARQLWKPPVG +E+GVIGC++L+PMK T GK +TDAY VAKY SKW+RT
Sbjct: 627 AHVSSDYRPTARQLWKPPVGVIEIGVIGCRDLVPMKSTATGKGSTDAYCVAKYGSKWVRT 686
Query: 685 RTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744
RTVS++ +P+WNEQYTW+VYDPCTVL +GVFDS + E ENG RPD RIGK+RIRI
Sbjct: 687 RTVSNNFDPKWNEQYTWQVYDPCTVLTIGVFDS--MEESENGD----RPDSRIGKIRIRI 740
Query: 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIK 804
STL+TGKVYRN YPLLLL + G KMGE+E+AVRF+R++P LDFLHVYSQPLLPLMHH+K
Sbjct: 741 STLKTGKVYRNFYPLLLLTTAGTKKMGELEIAVRFVRSAPPLDFLHVYSQPLLPLMHHVK 800
Query: 805 PLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINV 864
PLG+ QQ++LR AV+ + H +RSEPPLRRE V+ MLDA+SH+FSMRK+R NW+R+INV
Sbjct: 801 PLGVRQQDLLRGAAVETVVGHFSRSEPPLRREIVVFMLDAESHSFSMRKIRVNWYRVINV 860
Query: 865 LAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRK 924
+ +I ++W DDTRSW+NPTATILVHALLV+L+WFPDLI+PT++FYVFV G WNY+ R
Sbjct: 861 ASTIIAAVKWIDDTRSWRNPTATILVHALLVILIWFPDLIIPTISFYVFVTGAWNYKLRS 920
Query: 925 RDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFA 984
+ +P FD K+S+ D +ERDELDEEFD VPS R E+VR RYDKLR +G RVQ+LLGD A
Sbjct: 921 SEHIPSFDSKLSMTDIVERDELDEEFDDVPSTRSAEVVRMRYDKLRVIGTRVQSLLGDLA 980
Query: 985 AQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPS 1044
QGERVQALVTWRDPRATGIF G+CF VA++LY+V +MVA+AFGFYYLRHP+FRDR+PS
Sbjct: 981 TQGERVQALVTWRDPRATGIFTGICFAVAVVLYVVSLRMVAVAFGFYYLRHPVFRDRLPS 1040
Query: 1045 PALNFFRRLPSLSDRIM 1061
PALNF RRLPSLSDR+M
Sbjct: 1041 PALNFLRRLPSLSDRLM 1057
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518210|ref|XP_004166136.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227141 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1322 bits (3421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/1071 (60%), Positives = 796/1071 (74%), Gaps = 46/1071 (4%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
++KLIVEVVDARNLLPKDGHG+SSPY+V+DYYGQR++T T V DLNPTWNE LEFNVG P
Sbjct: 6 LRKLIVEVVDARNLLPKDGHGSSSPYIVVDYYGQRKRTRTIVHDLNPTWNEVLEFNVGPP 65
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQ 123
VF D+ EL++ HD++YGPT RNNFLGRIRLSS+QFVKKGEEALIY+ LEKKSL SWIQ
Sbjct: 66 SSVFGDVLELDVIHDRSYGPTRRNNFLGRIRLSSTQFVKKGEEALIYFRLEKKSLFSWIQ 125
Query: 124 GEVGLKIYYVDIVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAK 183
GE+GLKIYY D V TP A V + D A PT E +A ++P + E K
Sbjct: 126 GEIGLKIYYSDCV-TP-----ARVEEGD--AINTVEQPTTEG--DAINTVDQPTTEPELK 175
Query: 184 VDAEAVPAPENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKA 243
P+ ++P EP + +P Q + Q Q + G I TT
Sbjct: 176 --------PKEQKP----EPDSELKQSPLLEQQDVTQ--QTDELASIEGQIA--PTTENL 219
Query: 244 GPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGN-IPIN-GP 301
K AAP + S S E+ P ++++S +A + IN P
Sbjct: 220 ADKGNAAPEVETLGVESSTSPTEIPTPAVETVPGGATKTSSEEKQPTAESKEEAEINLTP 279
Query: 302 QPISRTMSTASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPTKGSPVVKIAVAN 361
QPI R+M S+ + T++ +E+S+FDLVEKMHYLFVRVVKAR L T P+V+I
Sbjct: 280 QPIKRSMPIPSYTLEATESRTMEQSTFDLVEKMHYLFVRVVKARSLATNSHPIVQIEAFG 339
Query: 362 SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPP-----GFLGGI 416
R++S PAR+++ FEWDQTFAF R + +S+S +E+SVWD D +P FLGG+
Sbjct: 340 KRIKSNPARKSNVFEWDQTFAFSRGAADSASMMEISVWDGKVNDAVSPTDVDGRNFLGGL 399
Query: 417 CFDVTEIPLRDPPDSPLAPQWYRME---GGGAYSGDLMLATWVGTQADDSFPDAWKTDTA 473
C DV++I LRDPPDSPLAPQWYR+E A+ G LMLATW+GTQADD+FP+AWKTD
Sbjct: 400 CLDVSDILLRDPPDSPLAPQWYRLERERNDAAFGGYLMLATWIGTQADDAFPNAWKTDAG 459
Query: 474 GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRN 533
GN NS+AK+Y SPK+WYLRATVIEAQD++P + A+KEA F +KAQLGFQV TK VTRN
Sbjct: 460 GNFNSRAKIYQSPKMWYLRATVIEAQDVVP-ITAVKEALFQVKAQLGFQVSVTKPVVTRN 518
Query: 534 GTPSWNEDLLFVAAEPFTDQLSFTLEN-RQHKGSVALGVTRVPLTAVERRVDDRKVASRW 592
G PSWN+DL FVAAEP TD L FT+E+ R K +GV ++PLT +ERRVDDRKV +RW
Sbjct: 519 GAPSWNQDLFFVAAEPMTDHLIFTVESPRSSKSPTVIGVVKIPLTDIERRVDDRKVTARW 578
Query: 593 FTFENTNDEK-RAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGV 651
T DEK +Y GR+ LRLCFDGGYHVMDEAAHV SDYRPTARQLWKPPVG +E+GV
Sbjct: 579 CTLAGVVDEKGSSYTGRIQLRLCFDGGYHVMDEAAHVSSDYRPTARQLWKPPVGVIEIGV 638
Query: 652 IGCKNLLPMK-TVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVL 710
IGC++L+PMK T GK +TDAY VAKY SKW+RTRTVS++ +P+WNEQYTW+VYDPCTVL
Sbjct: 639 IGCRDLVPMKSTATGKGSTDAYCVAKYGSKWVRTRTVSNNFDPKWNEQYTWQVYDPCTVL 698
Query: 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKM 770
+GVFDS + E ENG RPD RIGK+RIRISTL+TGKVYRN YPLLLL + G KM
Sbjct: 699 TIGVFDS--MEESENGD----RPDSRIGKIRIRISTLKTGKVYRNFYPLLLLTTAGTKKM 752
Query: 771 GEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSE 830
GE+E+AVRF+R++P LDFLHVYSQPLLPLMHH+KPLG+ QQ++LR AV+ + H +RSE
Sbjct: 753 GELEIAVRFVRSAPPLDFLHVYSQPLLPLMHHVKPLGVRQQDLLRGAAVETVVGHFSRSE 812
Query: 831 PPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILV 890
PPLRRE V+ MLDA+SH+FSMRK+R NW+R+INV + +I ++W DDTRSW+NPTATILV
Sbjct: 813 PPLRREIVVFMLDAESHSFSMRKIRVNWYRVINVASTIIAAVKWIDDTRSWRNPTATILV 872
Query: 891 HALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEF 950
HALLV+L+WFPDLI+PT++ YVFV G WNY+ R + +P FD K+S+ D +ERDELDEEF
Sbjct: 873 HALLVILIWFPDLIIPTISXYVFVTGAWNYKLRSSEHIPSFDSKLSMTDIVERDELDEEF 932
Query: 951 DTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCF 1010
D VPS R E+VR RYDKLR +G RVQ+LLGD A QGERVQALVTWRDPRATGIF G+CF
Sbjct: 933 DDVPSTRSAEVVRMRYDKLRVIGTRVQSLLGDLATQGERVQALVTWRDPRATGIFTGICF 992
Query: 1011 VVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
VA++LY+V +MVA+AFGFYYLRHP+FRDR+PSPALNF RRLPSLSDR+M
Sbjct: 993 AVAVVLYVVSLRMVAVAFGFYYLRHPVFRDRLPSPALNFLRRLPSLSDRLM 1043
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547535|ref|XP_003542167.1| PREDICTED: uncharacterized protein LOC100787960 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1160 bits (3000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/794 (70%), Positives = 654/794 (82%), Gaps = 26/794 (3%)
Query: 279 ISRSASMASFASATAGNIPINGPQPISRTMSTASFASDITDNIP------IERSSFDLVE 332
+SRS S F G P PQP+ R+ STASFA+ + +ERSSFDLVE
Sbjct: 231 VSRSNSEIRFNGTNNGPAP---PQPMRRSASTASFAASEASSETSSMMTMMERSSFDLVE 287
Query: 333 KMHYLFVRVVKARFLPTKGSPVVKIAVANSR-VESKPARR-TSCFEWDQTFAFGRDSPES 390
KMHYLFV VVKAR+LPT G+PVVKIAV+ V S PAR+ T FEW+QTFAF RD+P+S
Sbjct: 288 KMHYLFVHVVKARYLPTNGNPVVKIAVSGQHHVTSMPARKSTVLFEWNQTFAFARDAPDS 347
Query: 391 SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDL 450
SS LEVS WDP A LGG+CFDV EIP+RDPPDSPLAPQWYR+EGGGA GDL
Sbjct: 348 SSVLEVSAWDP-----QASEALLGGVCFDVNEIPVRDPPDSPLAPQWYRLEGGGALHGDL 402
Query: 451 MLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDI-LPPVAALK 509
M+ATW+GTQAD+SFPDAWK+DT +VNS+AKVY SPKLWYLRAT++EAQD+ L P+ + K
Sbjct: 403 MIATWMGTQADESFPDAWKSDTFAHVNSRAKVYQSPKLWYLRATLLEAQDVFLLPLTSSK 462
Query: 510 EASFTIKAQLGFQVQKTKVSVTRNGTPSWN-EDLLFVAAEPFTDQLSFTLENRQHKGSVA 568
E+ F +KA+LGFQV K+K VTRNGT SWN ED +FV AEP +D L FTLENRQ V
Sbjct: 463 ESCFRVKAKLGFQVLKSKTVVTRNGTVSWNNEDFIFVVAEPVSDHLMFTLENRQPDAPVT 522
Query: 569 LGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHV 628
+GV R+PL A+ERRVDDR VASRWFTF+N +D+K + + RVHLRLCFDGGYHVMDEAAHV
Sbjct: 523 IGVLRIPLLAIERRVDDRSVASRWFTFDNESDDKASSRPRVHLRLCFDGGYHVMDEAAHV 582
Query: 629 CSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVS 688
CSDYRPTARQLWKPPVGTVELG+IGCKNLLPMKTVNGKS+ DAY VAKY SKW+RTRTVS
Sbjct: 583 CSDYRPTARQLWKPPVGTVELGIIGCKNLLPMKTVNGKSSMDAYCVAKYGSKWVRTRTVS 642
Query: 689 DSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLE 748
D++EP+WNEQYTWKVYDP TVL +GVFDS + + +N + IGKVR+RISTL
Sbjct: 643 DNMEPKWNEQYTWKVYDPSTVLTIGVFDS-SLLDMDNDK------NTLIGKVRVRISTLH 695
Query: 749 TGKVYRNTYPLLLLG-SNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLG 807
TG+VY+NTYPLL+L +G+ KMGEIE+A+RF+RT+ LDFLHVYSQP+LPLMHH+KPLG
Sbjct: 696 TGRVYKNTYPLLVLSPVSGLKKMGEIEIAIRFVRTTQRLDFLHVYSQPMLPLMHHVKPLG 755
Query: 808 MVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAG 867
+VQQE LR+ V+++A HL+R+EPPLR+E V MLDADSH FSMRKVRANW+RIINV+A
Sbjct: 756 VVQQEALRNTTVRMVAGHLSRAEPPLRKEVVFYMLDADSHNFSMRKVRANWYRIINVIAA 815
Query: 868 VIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDP 927
V+DI+RW + TR W+NPTATILVHALLVMLVWFPDLI+PT FYVF +G WNYRFR RDP
Sbjct: 816 VVDIVRWIEHTRGWRNPTATILVHALLVMLVWFPDLIIPTFCFYVFAVGAWNYRFRARDP 875
Query: 928 LPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQG 987
LPHFDPKISLA+ ++R+ELDEEFDTVPS + +E+VR RYD+LR LGARVQT+LGD A QG
Sbjct: 876 LPHFDPKISLAEVVDREELDEEFDTVPSNKASEVVRVRYDRLRALGARVQTVLGDLATQG 935
Query: 988 ERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPAL 1047
ERVQALVTWRDPRATGIFV LC VA +LYLVPSKMVAMAFGFYYLRHP+FRDR+PSPAL
Sbjct: 936 ERVQALVTWRDPRATGIFVFLCLTVAFMLYLVPSKMVAMAFGFYYLRHPIFRDRLPSPAL 995
Query: 1048 NFFRRLPSLSDRIM 1061
NFFRRLPSLSDRIM
Sbjct: 996 NFFRRLPSLSDRIM 1009
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140395|ref|XP_002323568.1| predicted protein [Populus trichocarpa] gi|222868198|gb|EEF05329.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2554), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/1117 (47%), Positives = 704/1117 (63%), Gaps = 130/1117 (11%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
++KL+VEVVDAR+LLPKDG G+SS V+ D+ GQR++T T RDLNP W E LEF V P
Sbjct: 8 VRKLLVEVVDARDLLPKDGQGSSSACVIADFDGQRKRTTTKYRDLNPVWKETLEFIVSDP 67
Query: 64 PQVFTDMFELNIFHDKAYGPTT--RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW 121
+ + E+ + +DK +G + +N+FLGR+++ SQF K+GEE ++Y+PLEKKS+ S
Sbjct: 68 NNMEFEELEVEVLNDKKFGNGSGRKNHFLGRVKVYGSQFSKRGEEGIVYFPLEKKSVFSC 127
Query: 122 IQGEVGLKIYYVDIVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHE 181
I+GE+GL+I + D L Q PA + T++ + KP + PA E
Sbjct: 128 IRGEIGLRICFYD--------ELVEEDQQQAPAPSEEDADTLQDQ----KPLKSPAVIEE 175
Query: 182 AKVDAEAVPAPE-------------------NKEPAGDIEPQCDTSSAPEQVQANEEQAR 222
E + PE + P IE S P VQ N E
Sbjct: 176 EGRVFEVLARPEINCHDYHHPHHHHFHHNGTHSPPFVVIE-----ESPPPVVQVNSE--- 227
Query: 223 QQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRS 282
PS+ Q + P+ P H PEV+
Sbjct: 228 --PSLGSQQVPL----------PEEPHYVETHTQYH------PEVR-------------- 255
Query: 283 ASMASFASATAGNIPINGPQP----ISRTMSTASFASDITDNIPIERSSFDLVEKMHYLF 338
M + A++G+ + +P S + + F S+ T+ I +DLVE M YLF
Sbjct: 256 -RMQTTRVASSGDNRVKTLRPPIGDFSPKVISGRFKSESTERI----HPYDLVEPMQYLF 310
Query: 339 VRVVKARFLPTKGSPVVKIAVANSRVESKPARRT-----SCFEWDQTFAFGRDS------ 387
+ +VKAR L SP+VK+ + V SKPA EW Q FA G ++
Sbjct: 311 ISIVKARGLSQNESPIVKVRTSTHCVRSKPASYRPGASPDSPEWHQVFALGHNNKTDGQL 370
Query: 388 PESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGA-- 445
P ++ +E+SVWD A FLGG+CFD++E+P+RDPPDSPLAPQWYR+E A
Sbjct: 371 PNAAGNIEISVWD------ARSEQFLGGVCFDISEVPVRDPPDSPLAPQWYRLESDAAAG 424
Query: 446 -----YSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQD 500
SGD+ L+ W+GTQADD+F +AW +D ++++KVY SPKLWYLR TVIEAQD
Sbjct: 425 QICNRVSGDIQLSVWIGTQADDAFAEAWSSDAPYVSHTRSKVYQSPKLWYLRVTVIEAQD 484
Query: 501 I-----LPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPS--WNEDLLFVAAEPFTDQ 553
+ LPP+ IKAQLGFQ +T+ N + S W +DL+FVA EP +
Sbjct: 485 LHLSSNLPPLTV---PDIRIKAQLGFQSARTRRGSMSNHSTSFRWIDDLIFVAGEPLEES 541
Query: 554 LSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR--------AY 605
L +E+R K +V LG +P++++E+R D+R VAS+WF E + +Y
Sbjct: 542 LILLVEDRTTKEAVLLGHIIIPVSSIEQRYDERHVASKWFALEGGGGDTGGAGCATGGSY 601
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+GR+HLRLC +GGYHV+DEAAHVCSD+RPTA+QLWKP +G +ELG++G + LLPMKT G
Sbjct: 602 RGRIHLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAIGVLELGILGARGLLPMKTKGG 661
Query: 666 -KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724
K +TDAY VAKY KW+RTRT++DS EPRWNE+YTW+VYDP TVL +GVFD+W +F
Sbjct: 662 GKGSTDAYCVAKYGKKWVRTRTITDSFEPRWNEKYTWQVYDPSTVLTIGVFDNWHMF--- 718
Query: 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSP 784
G M +PDCRIGK+R+R+STLE+ KVY N+YPLL+L G+ KMGEIE+AVRF S
Sbjct: 719 -GEMSDDKPDCRIGKIRMRVSTLESNKVYMNSYPLLVLLRTGLKKMGEIELAVRFACPSL 777
Query: 785 TLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDA 844
D VY QPLLP MH+++PLG+ QQE LR A K+++ LARSEPPL E V MLDA
Sbjct: 778 LPDTCAVYGQPLLPKMHYLRPLGVAQQEALRGAATKMVSLWLARSEPPLGPEVVRYMLDA 837
Query: 845 DSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLI 904
DSHA+SMRK +ANWFRI+ VLA + + +W DD R W+N T+LVH L ++LVW+P+L+
Sbjct: 838 DSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWRNSVTTVLVHILYLVLVWYPELV 897
Query: 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRA 964
VPT YVF+IGVW YRFR + P D ++S A+T++ DELDEEFDTVPS RP EI+RA
Sbjct: 898 VPTGFLYVFLIGVWYYRFRPKIP-AGMDIRLSQAETVDSDELDEEFDTVPSMRPPEIIRA 956
Query: 965 RYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMV 1024
RYD+LR L ARVQT+LGDFA QGERVQALV+WRDPRAT +F+ +C + +ILY+VP KMV
Sbjct: 957 RYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIAVCLAITLILYVVPPKMV 1016
Query: 1025 AMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
A+A GFY+LRHPMFRD MP +LNFFRRLPSLSDR+M
Sbjct: 1017 AVALGFYFLRHPMFRDPMPPASLNFFRRLPSLSDRLM 1053
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090973|ref|XP_002309131.1| predicted protein [Populus trichocarpa] gi|222855107|gb|EEE92654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/785 (54%), Positives = 555/785 (70%), Gaps = 51/785 (6%)
Query: 310 TASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPTKGSPVVKIAVANSRVESKPA 369
+ F S+ T+ I +DLVE M YLF+R+VKAR L SP +K+ + V SKPA
Sbjct: 257 SGRFKSEPTERI----LPYDLVEPMQYLFIRIVKARGLSQNESPFIKLRTSTHFVRSKPA 312
Query: 370 RRT-----SCFEWDQTFAFGRDS-----PESSSFLEVSVWDPPRGDVAAPPGFLGGICFD 419
FEW Q FA G ++ + +E+SVWD + FLGG+C D
Sbjct: 313 SYRPGDSPGSFEWHQVFALGHNNKTDVQSSDAGIIEISVWD------SQSEQFLGGVCLD 366
Query: 420 VTEIPLRDPPDSPLAPQWYRMEGGGA-------YSGDLMLATWVGTQADDSFPDAWKTDT 472
++++P+RDPPDSPLAPQWYR+E G A SGD+ L+ W+GTQADD+FP+AW +D
Sbjct: 367 LSDVPVRDPPDSPLAPQWYRLESGAAADQNSCRVSGDIQLSVWIGTQADDAFPEAWSSDA 426
Query: 473 AGNVNSKAKVYVSPKLWYLRATVIEAQDI-----LPPVAALKEASFTIKAQLGFQVQKTK 527
++++KVY SPKLWYLR TVIEAQD+ LPP+ A +KAQLGFQ KT+
Sbjct: 427 PYVAHTRSKVYQSPKLWYLRVTVIEAQDLRIASNLPPLTA---PEIRVKAQLGFQSAKTR 483
Query: 528 VSVTRNGTPS--WNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDD 585
N + S W EDL+FVA EP + L +E+R +K ++ LG +P++++E+R+D+
Sbjct: 484 RGSMSNHSTSFQWIEDLIFVAGEPLEESLILLVEDRTNKEALLLGHIIIPVSSIEQRIDE 543
Query: 586 RKVASRWFTFENTNDEKR--------AYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTAR 637
R VAS+WF E D +Y+GR+HLRLC +GGYHV+DEAAHVCSD+RPTA+
Sbjct: 544 RHVASKWFALEGGGDTGGGGGGVNGGSYRGRIHLRLCLEGGYHVLDEAAHVCSDFRPTAK 603
Query: 638 QLWKPPVGTVELGVIGCKNLLPMKTVNG-KSTTDAYVVAKYASKWIRTRTVSDSLEPRWN 696
QLWKP +G +ELG++G + LLPMKT G K +TDAY VAK+ KW+RTRT++DS +PRWN
Sbjct: 604 QLWKPAIGVLELGILGARGLLPMKTKGGGKGSTDAYCVAKFGKKWVRTRTITDSFDPRWN 663
Query: 697 EQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNT 756
EQYTW+VYDPCTVL +GVFD+W +F G M +PDCRIGK+RIR+STLE+ KVY N+
Sbjct: 664 EQYTWQVYDPCTVLTIGVFDNWHMF----GDMSDDKPDCRIGKIRIRVSTLESNKVYTNS 719
Query: 757 YPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRS 816
YPLL+L G+ KMGEIE+AVRF S D Y QPLLP MH+++PLG+ QQE LR
Sbjct: 720 YPLLVLLRTGLKKMGEIELAVRFACPSLLPDTCAAYGQPLLPKMHYLRPLGVAQQEALRG 779
Query: 817 GAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWAD 876
A ++++ LARSEPPL E V MLDADSH +SMRK +ANWFRI+ VLA + + +W D
Sbjct: 780 AATRMVSLWLARSEPPLGPEVVRYMLDADSHTWSMRKSKANWFRIVAVLAWAVGLAKWLD 839
Query: 877 DTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKIS 936
D R W+N T+LVHAL ++LVW+PDL+VPT YV +IGVW YRFR + P D ++S
Sbjct: 840 DIRRWRNSVTTVLVHALYLVLVWYPDLVVPTGFLYVILIGVWYYRFRPKIP-AGMDIRLS 898
Query: 937 LADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTW 996
A+T++ DELDEEFDT+PS +P EI+RARYD+LR L ARVQT+LGDFA QGERVQALV+W
Sbjct: 899 QAETVDPDELDEEFDTIPSMKPPEIIRARYDRLRVLAARVQTVLGDFATQGERVQALVSW 958
Query: 997 RDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSL 1056
RDPRAT +F+G+C + +ILY+VP KMVA+A GFYYLRHPMFRD MP +LNFFRRLPSL
Sbjct: 959 RDPRATKLFIGVCLAITLILYVVPPKMVAVALGFYYLRHPMFRDPMPPASLNFFRRLPSL 1018
Query: 1057 SDRIM 1061
SDR+M
Sbjct: 1019 SDRLM 1023
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1061 | ||||||
| TAIR|locus:2161523 | 1049 | AT5G17980 [Arabidopsis thalian | 0.721 | 0.729 | 0.755 | 0.0 | |
| TAIR|locus:2019070 | 1081 | QKY "AT1G74720" [Arabidopsis t | 0.649 | 0.637 | 0.527 | 5.3e-245 | |
| TAIR|locus:2096409 | 1017 | AT3G03680 "AT3G03680" [Arabido | 0.679 | 0.708 | 0.492 | 6.1e-229 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.679 | 0.713 | 0.488 | 9.7e-220 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.676 | 0.709 | 0.473 | 2.6e-208 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.680 | 0.701 | 0.462 | 5.3e-208 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.678 | 0.931 | 0.510 | 1.2e-202 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.679 | 0.937 | 0.509 | 7.3e-201 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.657 | 0.673 | 0.461 | 1.1e-200 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.678 | 0.927 | 0.504 | 4.2e-198 |
| TAIR|locus:2161523 AT5G17980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3162 (1118.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 585/774 (75%), Positives = 674/774 (87%)
Query: 294 GNIPI--NGPQPISRTMS-TASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPTK 350
G+IP NGPQP+ R++S TAS+ S+I+D IERS+FDLVEKMHY+F+RVVKAR LPT
Sbjct: 279 GSIPETKNGPQPLRRSVSETASYTSEISDVSTIERSTFDLVEKMHYVFIRVVKARSLPTS 338
Query: 351 GSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE--SSSFLEVSVWDPPRGDVAA 408
GSPV KI+++ + ++SKPAR+TSCFEWDQTFAF RDSP+ SS LE+SVWD G +
Sbjct: 339 GSPVTKISLSGTMIQSKPARKTSCFEWDQTFAFLRDSPDLSSSPILEISVWDSSTGIETS 398
Query: 409 PPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAW 468
FLGGICFDV+EIPLRDPPDSPLAPQWYR+EGGGA++ DLMLATW GTQAD+SFPDAW
Sbjct: 399 Q--FLGGICFDVSEIPLRDPPDSPLAPQWYRLEGGGAHNSDLMLATWTGTQADESFPDAW 456
Query: 469 KTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPP-VAALKEASFTIKAQLGFQVQKTK 527
KTDTAGNV ++AKVY+S KLWYLRATVIEAQD+LPP + A KEASF +KAQLG QVQKTK
Sbjct: 457 KTDTAGNVTARAKVYMSSKLWYLRATVIEAQDLLPPQLTAFKEASFQLKAQLGSQVQKTK 516
Query: 528 VSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRK 587
+VTRNG PSWNEDLLFVAAEPF+DQL FTLE R KG V +G+ RVPL+A+ERRVDDR
Sbjct: 517 SAVTRNGAPSWNEDLLFVAAEPFSDQLVFTLEYRTSKGPVTVGMARVPLSAIERRVDDRL 576
Query: 588 VASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTV 647
VASRW E+ NDEKR + RVH+RLCFDGGYHVMDEAAHVCSDYRPTARQLWKP VG V
Sbjct: 577 VASRWLGLEDPNDEKRGNRSRVHIRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPAVGIV 636
Query: 648 ELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPC 707
ELG+IGCKNLLPMKTVNGK +TDAY VAKY SKW+RTRTVSDSL+P+WNEQYTWKVYDPC
Sbjct: 637 ELGIIGCKNLLPMKTVNGKGSTDAYTVAKYGSKWVRTRTVSDSLDPKWNEQYTWKVYDPC 696
Query: 708 TVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGM 767
TVL +GVFDSWG++E + G E TR D RIGKVRIRISTLETGK YRNTYPLL+L + G+
Sbjct: 697 TVLTIGVFDSWGVYEVDGGK-EATRQDLRIGKVRIRISTLETGKAYRNTYPLLMLVNGGV 755
Query: 768 TKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLA 827
K+GEIE+AVRF+RT+P LDFLHVY+QPLLPLMHHIKPL + Q++MLR+ AVKI+AAHL+
Sbjct: 756 KKLGEIELAVRFVRTAPPLDFLHVYTQPLLPLMHHIKPLSLFQEDMLRNTAVKILAAHLS 815
Query: 828 RSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTAT 887
RSEPPLR E V MLDAD+H FSMRKVRANW RI+NV+AG++D++RW DDTR WKNPT+T
Sbjct: 816 RSEPPLRPEIVRYMLDADTHTFSMRKVRANWLRIVNVVAGMVDVVRWVDDTRFWKNPTST 875
Query: 888 ILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELD 947
+LVHAL+VML+WFPDLIVPTLAFY+FVIG WNYRFR R LPHFDP++SLAD +RDELD
Sbjct: 876 LLVHALVVMLIWFPDLIVPTLAFYLFVIGAWNYRFRSRAALPHFDPRLSLADAADRDELD 935
Query: 948 EEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVG 1007
EEFD VPS RP E+VR RYDKLR +GARVQT+LG+ AAQGE++QALVTWRDPRATGIFVG
Sbjct: 936 EEFDVVPSNRPPEMVRLRYDKLRNVGARVQTILGEVAAQGEKMQALVTWRDPRATGIFVG 995
Query: 1008 LCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
LCF VA++LYLVP+KMVAMA GFYY RHP+FRDR PSP LNFFRRLPSLSDR+M
Sbjct: 996 LCFFVALVLYLVPTKMVAMASGFYYFRHPIFRDRKPSPVLNFFRRLPSLSDRLM 1049
|
|
| TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 5.3e-245, Sum P(3) = 5.3e-245
Identities = 379/718 (52%), Positives = 496/718 (69%)
Query: 366 SKPARRTSCFEWDQTFAFGR---DSPESSSFLEVSVWDPPRGDVAAPPGF-LGGICF-DV 420
++P EW+Q FA G DS + + LE+S WD F L + D
Sbjct: 371 NRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWDASSESFLGGVCFDLSEVPVRDP 430
Query: 421 TEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKA 480
+ PL P L + G SGD+ L+ W+GTQ D++FP+AW +D ++++
Sbjct: 431 PDSPLA-PQWYRLEGSGAD-QNSGRISGDIQLSVWIGTQVDEAFPEAWSSDAPHVAHTRS 488
Query: 481 KVYVSPKLWYLRATVIEAQD--ILPPVAALKEASFTIKAQLGFQVQKTKVSVTRN--GTP 536
KVY SPKLWYLR TV+EAQD I P + L +KAQLGFQ +T+ N G+
Sbjct: 489 KVYQSPKLWYLRVTVLEAQDLHIAPNLPPLTAPEIRVKAQLGFQSARTRRGSMNNHSGSF 548
Query: 537 SWNEDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFE 596
W+ED++FVA EP D L +E+R K + LG +P++++E+R+D+R V S+W T E
Sbjct: 549 HWHEDMIFVAGEPLEDCLVLMVEDRTTKEATLLGHAMIPVSSIEQRIDERFVPSKWHTLE 608
Query: 597 NTNDEKRA------------YKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPV 644
Y GR+ LRLC +GGYHV++EAAHVCSD+RPTA+QLWKPP+
Sbjct: 609 GEGGGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVLEEAAHVCSDFRPTAKQLWKPPI 668
Query: 645 GTVELGVIGCKNLLPMKTVNG-KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
G +ELG++G + LLPMK NG K +TDAY VAKY KW+RTRT++DS +PRW+EQYTW+V
Sbjct: 669 GILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKWVRTRTITDSFDPRWHEQYTWQV 728
Query: 704 YDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763
YDPCTVL +GVFD+W +F + RPD RIGK+RIR+STLE+ KVY N+YPLL+L
Sbjct: 729 YDPCTVLTVGVFDNWRMFSDASDD----RPDTRIGKIRIRVSTLESNKVYTNSYPLLVLL 784
Query: 764 SNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIA 823
+GM KMGEIEVAVRF S D Y QPLLP MH+I+PLG+ QQ+ LR A K++A
Sbjct: 785 PSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRPLGVAQQDALRGAATKMVA 844
Query: 824 AHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKN 883
A LAR+EPPL E V MLDADSHA+SMRK +ANW+RI+ VLA + + +W D+ R W+N
Sbjct: 845 AWLARAEPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVLAWAVGLAKWLDNIRRWRN 904
Query: 884 PTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIER 943
P T+LVH L ++LVW+PDL+VPT YV +IGVW YRFR + P D ++S A+T++
Sbjct: 905 PVTTVLVHILYLVLVWYPDLVVPTAFLYVVMIGVWYYRFRPKIPAG-MDIRLSQAETVDP 963
Query: 944 DELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATG 1003
DELDEEFDT+PS+R E++RARYD+LR L RVQT+LGDFAAQGER+QALV+WRDPRAT
Sbjct: 964 DELDEEFDTIPSSRRPEVIRARYDRLRILAVRVQTILGDFAAQGERIQALVSWRDPRATK 1023
Query: 1004 IFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
+F+ +C V+ ++LY VP+KMVA+A GFYYLRHPMFRD MP+ +LNFFRRLPSLSDR++
Sbjct: 1024 LFIAICLVITIVLYAVPAKMVAVALGFYYLRHPMFRDTMPTASLNFFRRLPSLSDRLI 1081
|
|
| TAIR|locus:2096409 AT3G03680 "AT3G03680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1868 (662.6 bits), Expect = 6.1e-229, Sum P(2) = 6.1e-229
Identities = 373/757 (49%), Positives = 508/757 (67%)
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGS-PV-VKIAVANSRVESKPARRTSCFEWDQTFAFGR 385
+DLV++M +L++RV KA+ GS PV K+ + + V++ R + +WDQ FAF +
Sbjct: 274 YDLVDRMPFLYIRVAKAKRAKNDGSNPVYAKLVIGTNGVKT---RSQTGKDWDQVFAFEK 330
Query: 386 DSPESSSFLEVSVWDPPRGD-----VAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
+S S+S LEVSVW + + LG + FD+ E+P R PPDSPLAPQWY +
Sbjct: 331 ESLNSTS-LEVSVWSEEKIEKEDKTTTTTESCLGTVSFDLQEVPKRVPPDSPLAPQWYTL 389
Query: 441 EGGGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNV-NSKAKVYVSPKLWYLRATVIEAQ 499
E + D+MLA W+GTQAD++F +AW++D+ G + +++KVY+SPKLWYLR TVI+ Q
Sbjct: 390 ESEKSPGNDVMLAVWLGTQADEAFQEAWQSDSGGLIPETRSKVYLSPKLWYLRLTVIQTQ 449
Query: 500 DI---LPPVAALK--EASFTIKAQLGFQVQKT-------KVSVTRNGTPSWNEDLLFVAA 547
D+ L A K +KAQLG QV KT S + +G P+WNEDL+FVA+
Sbjct: 450 DLQLGLGSEAKSKIPTTELYVKAQLGPQVFKTARTSIGPSASSSGSGNPTWNEDLVFVAS 509
Query: 548 EPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDR-KVASRWFTFENTNDEKRAYK 606
EPF L T+E+ + S+ G T++ + +VERR DDR + SRWF DEK+ Y
Sbjct: 510 EPFEPFLIVTVEDITNGQSI--GQTKIHMGSVERRNDDRTEPKSRWFNL--AGDEKKPYS 565
Query: 607 GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG- 665
GR+H+++C +GGYHV+DEAAHV SD RP+A+QL KPP+G +E+G+ G NLLP+KT +G
Sbjct: 566 GRIHVKVCLEGGYHVLDEAAHVTSDVRPSAKQLAKPPIGLLEVGIRGATNLLPVKTRDGT 625
Query: 666 KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725
+ TTDAYVVAKY KWIRTRT+ D PRWNEQYTW VYDPCTVL +GVFD+ E+
Sbjct: 626 RGTTDAYVVAKYGPKWIRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDES 685
Query: 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPT 785
G D R+GK+R+R+STL+ ++Y N+Y L ++ +G KMGE+E+AVRF + P+
Sbjct: 686 GKQGR---DVRVGKIRVRLSTLDMNRIYLNSYTLTVILPSGAKKMGEVEIAVRF--SCPS 740
Query: 786 -LDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDA 844
L + Y P+LP MH+++PLG QQ++LR A++I+ A LARSEPPL +E V MLD
Sbjct: 741 WLSIIQAYVTPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQYMLDT 800
Query: 845 DSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLI 904
D+H +SMR+ +ANWFR+I L+ I RW R+W +P T+LVH LLV +V P L+
Sbjct: 801 DNHVWSMRRSKANWFRVITFLSRAATIARWIHGIRTWVHPPTTVLVHLLLVAIVLCPHLV 860
Query: 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRA 964
+PT+ Y F+I +R+R R + DP++S D++ DELDEEFD P+ R E+VR
Sbjct: 861 LPTVFMYAFLILALRFRYRGRVKVNSVDPRLSCVDSVAPDELDEEFDGFPTTRQPEVVRI 920
Query: 965 RYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMV 1024
RYD+LR L R QTLLGD AAQGERV+AL WRDPRAT IFV C + + Y+VP K+
Sbjct: 921 RYDRLRALAGRAQTLLGDVAAQGERVEALFNWRDPRATCIFVVFCLFASFLFYIVPFKVF 980
Query: 1025 AMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
+ GFYY+RHP FRD MPS +NFFRRLPS+SD+I+
Sbjct: 981 LLGSGFYYIRHPRFRDDMPSVPVNFFRRLPSMSDQIL 1017
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1880 (666.9 bits), Expect = 9.7e-220, Sum P(2) = 9.7e-220
Identities = 370/758 (48%), Positives = 517/758 (68%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
S++DLVE+M++L+VRVVKAR LP GS P V++ V N + ++ + EW+Q
Sbjct: 269 STYDLVERMYFLYVRVVKARELPIMDITGSVDPFVEVRVGNYKGITRHFEKRQHPEWNQV 328
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
FAF ++ ++S LEV V D D+ ++G + FD+ ++PLR PPDSPLAPQWYR+
Sbjct: 329 FAFAKERMQAS-VLEVVVKDK---DLLKDD-YVGFVRFDINDVPLRVPPDSPLAPQWYRL 383
Query: 441 EG--GGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNS--------KAKVYVSPKLWY 490
E G G+LMLA W+GTQAD++F DAW +D A V+ ++KVY +P+LWY
Sbjct: 384 EDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAAMPVDCSPAISAVLRSKVYHAPRLWY 443
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPF 550
+R VIEAQD++P + +KAQLG QV KT+ R WNED LFV AEPF
Sbjct: 444 VRVNVIEAQDLIP-TDKTRFPDVYVKAQLGNQVMKTRPCQARTLGAVWNEDFLFVVAEPF 502
Query: 551 TDQLSFTLENRQHKGSVAL-GVTRVPLTAVERRVDDRKVASRWFTFE-----NTNDEKRA 604
D L T+E+R G + G T +PL VE+R DD + +RW+ E + + KR
Sbjct: 503 EDHLVLTVEDRVAPGKDEIVGRTYIPLNTVEKRADDHMIHARWYNLERPVIVDVDQLKRE 562
Query: 605 -YKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTV 663
+ R+HLR+C +GGYHV+DE+ H SD RP+AR LW+ P+G +ELG++ L PMKT
Sbjct: 563 KFSMRIHLRVCLEGGYHVLDESTHYSSDLRPSARPLWRQPIGVLELGILNAVGLHPMKTR 622
Query: 664 NGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723
G+ T+D + V KY KW+RTRT+ D+L P++NEQYTW+V+DP TVL +GVFD+ + G
Sbjct: 623 EGRGTSDTFCVGKYGQKWVRTRTMVDNLCPKYNEQYTWEVFDPATVLTVGVFDNGQL--G 680
Query: 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783
E G+ D +IGK+RIR+STLETG++Y ++YPLL+L G+ KMGE+ +AVRF S
Sbjct: 681 EKGNR-----DVKIGKIRIRLSTLETGRIYTHSYPLLVLHPTGVKKMGELHMAVRFTCIS 735
Query: 784 PTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLD 843
+ L+ YS+PLLP MH+++P ++QQ+MLR AV I+AA L R+EPPLR+E + M D
Sbjct: 736 -FANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQAVNIVAARLGRAEPPLRKEIIEFMSD 794
Query: 844 ADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDL 903
DSH +SMRK +AN+FR++ V +GVI + +W D SW+NP T+LVH L +MLV P+L
Sbjct: 795 TDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSDICSWRNPITTVLVHVLFLMLVCLPEL 854
Query: 904 IVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVR 963
I+PT+ Y+F+IG+WNYRFR R P PH + KIS A+ + DELDEEFDT P+ R ++VR
Sbjct: 855 ILPTMFLYMFLIGLWNYRFRPRYP-PHMNTKISQAEAVHPDELDEEFDTFPTTRNPDMVR 913
Query: 964 ARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKM 1023
RYD+LR++ R+QT++GD A QGER QAL++WRDPRAT IFV LCF+ A++ ++ P ++
Sbjct: 914 LRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRDPRATAIFVILCFIAAIVFFITPIQI 973
Query: 1024 VAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
V GF+ +RHP FR R+PS +NFFRRLP+ +D ++
Sbjct: 974 VVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTDSML 1011
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1778 (630.9 bits), Expect = 2.6e-208, Sum P(2) = 2.6e-208
Identities = 360/761 (47%), Positives = 514/761 (67%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTKGSPVVKIAVANSR-VESKPARRTSCFEWDQTFAFG 384
S++DLVE+M YL+V +VKA+ L G V ++ + N R V K + +S EW+Q F F
Sbjct: 270 STYDLVEQMQYLYVNIVKAKDLSVLGEVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFS 329
Query: 385 RDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG-- 442
++ +SS +E+ V + + + + G + FD++EIP R PPDSPLAPQWY++E
Sbjct: 330 KERIQSS-VVELFVKEGNKDE------YTGRVLFDLSEIPTRVPPDSPLAPQWYKIENRN 382
Query: 443 GGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNS------KAKVYVSPKLWYLRATVI 496
GG +G+LM++ W GTQAD++F +AW + AGNV+ K+KVY+SPKLWYLR +VI
Sbjct: 383 GGRGNGELMVSVWFGTQADEAFAEAWHSK-AGNVHIEELSSIKSKVYLSPKLWYLRISVI 441
Query: 497 EAQD--ILPPVAALKE-ASFTIKAQLGFQVQKTKVSV---TRN-GTPSWNEDLLFVAAEP 549
EAQD I+ ++L + K Q+G Q+ +T ++ T++ P WNEDL+FV AEP
Sbjct: 442 EAQDVAIMDKGSSLMRFPELSAKLQVGSQILRTAIASAIPTKSFSNPYWNEDLMFVVAEP 501
Query: 550 FTDQLSFTLENRQHKGS------VALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR 603
F D ++ +E+R + G+ VA+G ++P++AVERR D V SRWF+ +N N+ R
Sbjct: 502 FEDCVTVVVEDRLNGGAIGGQNDVAVGRVQIPISAVERRTGDTLVGSRWFSLDNGNNNNR 561
Query: 604 AYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTV 663
+ R+HLRL DGGYHV+DEA SD RPTA++LWKP VG +E+G++ L+PMK
Sbjct: 562 -FGSRIHLRLSLDGGYHVLDEATMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVR 620
Query: 664 NGK--STTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIF 721
+GK D+Y VAKY KW+RTRTV DSL P+WNEQYTW+VYDPCTV+ +GVFD+ +
Sbjct: 621 DGKCGGIADSYCVAKYGPKWVRTRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVN 680
Query: 722 EGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781
E N D RIGKVRIR+STLETG+VY ++YPL++L +G+ K GE+ +AVR +
Sbjct: 681 ENNNSR------DVRIGKVRIRLSTLETGRVYTHSYPLIVLHPSGVKKTGELHLAVR-LS 733
Query: 782 TSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCM 841
++ LH+Y+ PLLP MH+ +PLG+ E LR + +AA L+R+EPPL RE V M
Sbjct: 734 CGNAVNMLHMYALPLLPKMHYTQPLGVHMLERLRYQTLNAVAARLSRAEPPLGREVVEYM 793
Query: 842 LDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPT-ATILVHALLVMLVWF 900
LD D H +SMR+ +AN+FR++NV++G++ + + + RSW P +T+ V A L M++ F
Sbjct: 794 LDHDFHVWSMRRSKANFFRLVNVISGLVAVAKLVEVMRSWSKPVYSTVFVLAFLFMVL-F 852
Query: 901 PDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNE 960
P+L++P L Y +GVW +R R R P PH D +IS A+T+ DELDEEFDT P++R +
Sbjct: 853 PELLLPCLLLYTAAVGVWRFRRRSRYP-PHMDARISHAETVFPDELDEEFDTFPTSRGFD 911
Query: 961 IVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVP 1020
+VR RYD++R++ RVQT++GD A+QGERVQAL++WRDPRAT +F+ C + A+ Y VP
Sbjct: 912 VVRMRYDRVRSIAGRVQTVVGDMASQGERVQALLSWRDPRATFLFLMFCLLAAVGFYTVP 971
Query: 1021 SKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
K+ G YYLR P FR ++PS L+FFRRLPS +D ++
Sbjct: 972 VKLTVAISGLYYLRPPRFRRKLPSRGLSFFRRLPSRADSLL 1012
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1771 (628.5 bits), Expect = 5.3e-208, Sum P(2) = 5.3e-208
Identities = 351/759 (46%), Positives = 514/759 (67%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPT---KGS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
S++DLVE+MHYL+V VVKAR LP GS P V++ + N + +K + S W Q
Sbjct: 285 STYDLVEQMHYLYVSVVKARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQI 344
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
FAF ++ +S+ LEV+V D D+ F+G + D+TE+PLR PPDSPLAPQWYR+
Sbjct: 345 FAFSKERLQSN-LLEVTVKDK---DLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRL 400
Query: 441 E---GGGAYSGDLMLATWVGTQADDSFPDAWKTD----TAGNV-NSKAKVYVSPKLWYLR 492
E G G++MLA W+GTQAD+SFPDAW +D + N+ N+++KVY SPKL+YLR
Sbjct: 401 EDKKGMKTNRGEIMLAVWMGTQADESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLYYLR 460
Query: 493 ATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTD 552
V+EAQD++P + +K Q G Q++ T+ R P W+E+L+FV +EPF D
Sbjct: 461 IHVMEAQDLVPSDKG-RVPDAIVKIQAGNQMRATRTPQMRTMNPQWHEELMFVVSEPFED 519
Query: 553 QLSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVAS-RWF-------TFENTNDE-K 602
+ ++++R G LG +P+ V R + K+ RWF + E N++ K
Sbjct: 520 MVIVSVDDRIGPGKDEILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRK 579
Query: 603 RAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKT 662
+ ++ LR+C + GYHV+DE+ H SD +P+++ L KP +G +ELG++ +NL+PMK
Sbjct: 580 EKFSSKILLRVCIEAGYHVLDESTHFSSDLQPSSKHLRKPSIGILELGILSARNLMPMKG 639
Query: 663 VNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722
+G+ T D Y VAKY +KW+RTRT+ D+L P+WNEQYTW+V+DPCTV+ +GVFD+ + +
Sbjct: 640 KDGRMT-DPYCVAKYGNKWVRTRTLLDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVND 698
Query: 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782
G G + D RIGKVR+R+STLET +VY + YPLL+L G+ K GE+++A+R+ T
Sbjct: 699 G--GDFK----DQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQLALRYTCT 752
Query: 783 SPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCML 842
++ + Y +PLLP MH+I+P+ + ++LR A++I+A L+RSEPPLRRE V ML
Sbjct: 753 G-FVNMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVATRLSRSEPPLRREVVEYML 811
Query: 843 DADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPD 902
D D H FS+R+ +AN+ RI+++L+ V + +W +D +W+NP T LVH L ++LV +P+
Sbjct: 812 DVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTWRNPITTCLVHVLFLILVCYPE 871
Query: 903 LIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIV 962
LI+PT+ Y+FVIG+WNYR+R R P PH D ++S AD DELDEEFDT P++RP +IV
Sbjct: 872 LILPTVFLYLFVIGMWNYRYRPRHP-PHMDARVSQADNAHPDELDEEFDTFPTSRPADIV 930
Query: 963 RARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSK 1022
R RYD+LR++G RVQT++GD A QGER+QAL++WRDPRAT +F+ + A+ +Y+ P +
Sbjct: 931 RMRYDRLRSVGGRVQTVVGDLATQGERIQALLSWRDPRATALFIVFALIWAVFIYVTPFQ 990
Query: 1023 MVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
++A+ G + LRHP FR RMPS NFF+RLP+ SD ++
Sbjct: 991 VIAIIIGLFMLRHPRFRSRMPSVPANFFKRLPAKSDMLL 1029
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1961 (695.4 bits), Expect = 1.2e-202, P = 1.2e-202
Identities = 385/754 (51%), Positives = 529/754 (70%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
S++DLVE+M YL+VRVVKA+ LP K GS P V++ + N + ++ + S EW+Q
Sbjct: 30 STYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQV 89
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
FAF +D ++S FLE +V D D +G + FD+ E+P R PPDSPLAPQWYR+
Sbjct: 90 FAFSKDRIQAS-FLEATVKDK---DFVKDD-LIGRVVFDLNEVPKRVPPDSPLAPQWYRL 144
Query: 441 EG--GGAYSGDLMLATWVGTQADDSFPDAWKTDTA---GN---VNSKAKVYVSPKLWYLR 492
E G G+LMLA W GTQAD++FP+AW +D A G N ++KVY+SPKLWYLR
Sbjct: 145 EDRKGDKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLR 204
Query: 493 ATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTD 552
VIEAQD++P + +KA +G Q +T+VS +R P WNEDL+FVAAEPF +
Sbjct: 205 VNVIEAQDLIP-TDKQRYPEVYVKAIVGNQALRTRVSQSRTINPMWNEDLMFVAAEPFEE 263
Query: 553 QLSFTLENR--QHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN---TNDEKRAYK- 606
L ++E+R +K V LG +PL ++RR D + V SRW+ E + EK+ K
Sbjct: 264 PLILSVEDRVAPNKDEV-LGRCAIPLQYLDRRFDHKPVNSRWYNLEKHIMVDGEKKETKF 322
Query: 607 -GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
R+H+R+C +GGYHV+DE+ H SD RPTA+QLWKP +G +ELG++ L+PMKT +G
Sbjct: 323 ASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLELGILNATGLMPMKTKDG 382
Query: 666 KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725
+ TTDAY VAKY KWIRTRT+ DS PRWNEQYTW+V+DPCTV+ +GVFD+ + GE
Sbjct: 383 RGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGEK 442
Query: 726 -GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSP 784
G + D RIGKVRIR+STLET +VY ++YPLL+L NG+ KMGEI +AVRF +S
Sbjct: 443 IGGAK----DSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSS- 497
Query: 785 TLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDA 844
L+ +++YSQPLLP MH+I PL + Q + LR A +I++ L R+EPPLR+E V MLD
Sbjct: 498 LLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLTRAEPPLRKEVVEYMLDV 557
Query: 845 DSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLI 904
SH +SMR+ +AN+FRI+ VL+G+I + +W + +WKNP T+L+H L ++LV +P+LI
Sbjct: 558 GSHMWSMRRSKANFFRIMGVLSGLIAVGKWFEQICNWKNPITTVLIHLLFIILVLYPELI 617
Query: 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRA 964
+PT+ Y+F+IG+W YR+R R P PH D ++S AD+ DELDEEFDT P++RP++IVR
Sbjct: 618 LPTIFLYLFLIGIWYYRWRPRHP-PHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRM 676
Query: 965 RYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMV 1024
RYD+LR++ R+QT++GD A QGER+Q+L++WRDPRAT +FV C + A+ILY+ P ++V
Sbjct: 677 RYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVLFCLIAAVILYVTPFQVV 736
Query: 1025 AMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSD 1058
A+ G Y LRHP FR ++PS LNFFRRLP+ +D
Sbjct: 737 ALCIGIYALRHPRFRYKLPSVPLNFFRRLPARTD 770
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1944 (689.4 bits), Expect = 7.3e-201, P = 7.3e-201
Identities = 384/754 (50%), Positives = 520/754 (68%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
S++DLVE+MHYL+VRVVKA+ LP K GS P V++ + N R +K + S EW Q
Sbjct: 31 STYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKLGNYRGMTKHFEKRSNPEWKQV 90
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
FAF ++ ++S LEV V D DV +G I FD+ EIP R PPDSPLAPQWYR+
Sbjct: 91 FAFSKERIQAS-ILEVVVKDK---DVVLDD-LIGRIMFDLNEIPKRVPPDSPLAPQWYRL 145
Query: 441 EG--GGAYSGDLMLATWVGTQADDSFPDAWKTDTA-----GNVNSKAKVYVSPKLWYLRA 493
E G G+LMLA W+GTQAD++F DAW +D A G + ++KVY+SPKLWY+R
Sbjct: 146 EDRHGRKVKGELMLAVWMGTQADEAFSDAWHSDAATVGPEGVTHIRSKVYLSPKLWYVRV 205
Query: 494 TVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQ 553
VIEAQD++P K +KA LG Q +T++S T+ P WNEDL+FV AEPF +
Sbjct: 206 NVIEAQDLIPHDKT-KFPEVYVKAMLGNQTLRTRISQTKTLNPMWNEDLMFVVAEPFEEA 264
Query: 554 LSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVASRWFTFEN---TNDEKRAYK--G 607
L +E+R LG +PL V+RR+D R + SRWF E E++ K
Sbjct: 265 LILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNLEKHIMVEGEQKEIKFAS 324
Query: 608 RVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKS 667
R+HLR+ +GGYHV+DE+ H SD RPTA+QLWKP +G +E+G+I L+PMK+ +GK
Sbjct: 325 RIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEVGIISAHGLMPMKSKDGKG 384
Query: 668 TTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGS 727
TTDAY VAKY KWIRTRT+ DS P+WNEQYTW+V+D CTV+ G FD+ G G +G
Sbjct: 385 TTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTVITFGAFDN-GHIPGGSGK 443
Query: 728 METTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLD 787
D RIGKVRIR+STLE ++Y ++YPLL+ +G+ K GEI++AVRF S ++
Sbjct: 444 ------DLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGEIQLAVRFTCLS-LIN 496
Query: 788 FLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSH 847
LH+YSQPLLP MH+I PL ++Q + LR A+ I++A L R+EPPLR+E V MLD DSH
Sbjct: 497 MLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPLRKEIVEYMLDVDSH 556
Query: 848 AFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPT 907
+SMR+ +AN+FRI+NVL+G+I + +W D +W+NP TIL+H L ++LV +P+LI+PT
Sbjct: 557 MWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVLFIILVLYPELILPT 616
Query: 908 LAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYD 967
+ Y+F+IG+WN+R+R R P PH D ++S AD + DELDEEFDT P++R +EIVR RYD
Sbjct: 617 VFLYLFLIGIWNFRWRPRHP-PHMDTRLSHADAVHPDELDEEFDTFPTSRSSEIVRMRYD 675
Query: 968 KLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMA 1027
+LR++G RVQT++GD A QGER +L++WRDPRAT +FV C + A++LY+ P ++VA+
Sbjct: 676 RLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVALL 735
Query: 1028 FGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
G Y LRHP FR ++PS LN FRRLP+ SD ++
Sbjct: 736 AGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1710 (607.0 bits), Expect = 1.1e-200, Sum P(2) = 1.1e-200
Identities = 337/731 (46%), Positives = 482/731 (65%)
Query: 353 PVVKIAVANSRVESKPA-RRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPP---RGDVAA 408
P V++ + N + +K R+T+ EW+Q FAF ++ +SS LEV V D R D+
Sbjct: 317 PYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSS-VLEVFVKDKETLGRDDILG 375
Query: 409 PPGF-LGGICFDVTEIPLRDP--PDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFP 465
F L I T +P P P W R EG G++MLA W+GTQAD++FP
Sbjct: 376 KVVFDLNEI---PTRVPPNSPLAPQWYRLEDW-RGEGK-VVRGEIMLAVWMGTQADEAFP 430
Query: 466 DAWKTDTA-----GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG 520
+AW D+A G N ++KVYVSPKLWYLR VIEAQD++P F +KA +G
Sbjct: 431 EAWHADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVF-VKASVG 489
Query: 521 FQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGS-VALGVTRVPLTAV 579
Q KT + + P W EDL+FV AEPF +QL ++E+R H +G +P+
Sbjct: 490 MQTLKTSICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVF 549
Query: 580 ERRVDDRKVASRWFTFENTN------DEKRA---YKGRVHLRLCFDGGYHVMDEAAHVCS 630
E+R+D R V SRWF + D +R + R+HLR+C +GGYHVMDE+ S
Sbjct: 550 EKRLDHRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYIS 609
Query: 631 DYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDS 690
D RPTARQLWK PVG +E+G++G L+PMK +G+ +T+AY VAKY KW+RTRT+ D+
Sbjct: 610 DTRPTARQLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDT 669
Query: 691 LEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG 750
L PRWNEQYTW+VYDPCTV+ LGVFD+ + ++G+ ++ D RIGKVRIR+STLE
Sbjct: 670 LSPRWNEQYTWEVYDPCTVITLGVFDNSHLGSAQSGTADSR--DARIGKVRIRLSTLEAH 727
Query: 751 KVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLPLMHHIKPLGMVQ 810
K+Y +++PLL+L +G+ K G+++++VRF S + ++ Y PLLP MH++ P + Q
Sbjct: 728 KIYTHSFPLLVLQPHGLKKTGDLQISVRFTTLS-LANIIYNYGHPLLPKMHYLFPFTVNQ 786
Query: 811 QEMLRSGAVKIIAAHLARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRIINVLAGVID 870
+ LR A+ I++ L R+EPPLR+E V MLD DSH +SMR+ +AN+FRI+++L+G
Sbjct: 787 VDGLRYQAMNIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFL 846
Query: 871 ILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVWNYRFRKRDPLPH 930
+ +W +D +W+ P ++LV+ L +LV +P+LI+PT+ Y+F IG+WN+R R R P PH
Sbjct: 847 VGKWLEDVCNWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHP-PH 905
Query: 931 FDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERV 990
D K+S A+ + DELDEEFDT P++R E+VR RYD+LR++ R+QT++GD AAQGER+
Sbjct: 906 MDMKLSWAEAVGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERI 965
Query: 991 QALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFF 1050
Q+L++WRDPRAT +F+ C +++LY +P K +A+A G YYLRHP FR ++PS NFF
Sbjct: 966 QSLLSWRDPRATSLFILFCLAASVVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFF 1025
Query: 1051 RRLPSLSDRIM 1061
+RLPS +D ++
Sbjct: 1026 KRLPSSTDSLL 1036
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1918 (680.2 bits), Expect = 4.2e-198, P = 4.2e-198
Identities = 382/757 (50%), Positives = 522/757 (68%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
+++DLVE+M YL+VRVVKA+ LP K GS P V++ + N R ++ + S EW+Q
Sbjct: 30 TTYDLVEQMQYLYVRVVKAKELPGKDLTGSCDPYVEVKLGNYRGTTRHFEKKSNPEWNQV 89
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
FAF +D ++S +LE +V D D+ +G + FD+ EIP R PPDSPLAPQWYR+
Sbjct: 90 FAFSKDRVQAS-YLEATVKDK---DLVKDD-LIGRVVFDLNEIPKRVPPDSPLAPQWYRL 144
Query: 441 EGGGAYS--GDLMLATWVGTQADDSFPDAWKTDTA---GN---VNSKAKVYVSPKLWYLR 492
E G G+LMLA W GTQAD++FP+AW +D A G N ++KVY+SPKLWYLR
Sbjct: 145 EDGKGQKVKGELMLAVWFGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLR 204
Query: 493 ATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTD 552
VIEAQD++P F +K +G Q +T+VS +R+ P WNEDL+FV AEPF +
Sbjct: 205 VNVIEAQDLIPSDKGRYPEVF-VKVIMGNQALRTRVSQSRSINPMWNEDLMFVVAEPFEE 263
Query: 553 QLSFTLENR--QHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN----TNDEKRAYK 606
L ++E+R +K V LG VPL +++R D R V SRWF E EK+ K
Sbjct: 264 PLILSVEDRVAPNKDEV-LGRCAVPLQYLDKRFDYRPVNSRWFNLEKHVIMEGGEKKEIK 322
Query: 607 --GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVN 664
++H+R+C +GGYHV+DE+ H SD RPTA+QLWKP +G +ELGV+ L+PMK
Sbjct: 323 FASKIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKPNIGVLELGVLNATGLMPMKAKE 382
Query: 665 G-KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723
G + TTDAY VAKY KWIRTRT+ DS PRWNEQYTW+V+DPCTV+ +GVFD+ + G
Sbjct: 383 GGRGTTDAYCVAKYGQKWIRTRTIIDSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGG 442
Query: 724 E--NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781
+ NG + D RIGKVRIR+STLE +VY ++YPLL+L +G+ KMGEI +AVRF
Sbjct: 443 DKNNGGGK----DSRIGKVRIRLSTLEADRVYTHSYPLLVLHPSGVKKMGEIHLAVRFTC 498
Query: 782 TSPTLDFLHVYSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHLARSEPPLRRETVLCM 841
+S L+ +++YS PLLP MH++ PL + Q + LR A +I++ L R+EPPLR+E V M
Sbjct: 499 SS-LLNMMYMYSMPLLPKMHYLHPLTVSQLDNLRHQATQIVSTRLTRAEPPLRKEVVEYM 557
Query: 842 LDADSHAFSMRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFP 901
LD SH +SMR+ +AN+FRI+ VL+G+I + +W + WKNP T+L+H L ++LV +P
Sbjct: 558 LDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWFEQICVWKNPITTVLIHILFIILVIYP 617
Query: 902 DLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEI 961
+LI+PT+ Y+F+IGVW YR+R R P PH D ++S AD+ DELDEEFDT P++RP++I
Sbjct: 618 ELILPTIFLYLFLIGVWYYRWRPRHP-PHMDTRLSHADSAHPDELDEEFDTFPTSRPSDI 676
Query: 962 VRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPS 1021
VR RYD+LR++ R+QT++GD A QGER Q+L++WRDPRAT +FV C + A+ILY+ P
Sbjct: 677 VRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSWRDPRATALFVLFCLIAAVILYITPF 736
Query: 1022 KMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSD 1058
++VA A G Y LRHP R ++PS LNFFRRLP+ +D
Sbjct: 737 QVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPARTD 773
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1061 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 2e-88 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 9e-62 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 5e-55 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 3e-50 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 4e-50 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 6e-18 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 9e-18 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-15 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 6e-14 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 8e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-12 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-12 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-11 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-11 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-10 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-10 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 3e-10 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 9e-10 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-09 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 3e-09 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 8e-09 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-09 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 5e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-08 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 1e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-07 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 2e-07 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-07 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 4e-07 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 7e-07 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 7e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 9e-07 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 1e-06 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-06 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-06 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-06 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 2e-06 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-06 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-06 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 5e-06 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 5e-06 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 7e-06 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 9e-06 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 9e-06 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-05 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-05 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 2e-05 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 3e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-05 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 4e-05 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 6e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 6e-05 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 9e-05 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-04 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 1e-04 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 1e-04 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-04 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-04 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 2e-04 | |
| pfam06398 | 360 | pfam06398, Pex24p, Integral peroxisomal membrane p | 2e-04 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 3e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 3e-04 | |
| PRK10811 | 1068 | PRK10811, rne, ribonuclease E; Reviewed | 3e-04 | |
| cd08382 | 123 | cd08382, C2_Smurf-like, C2 domain present in Smad | 3e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 4e-04 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 4e-04 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 5e-04 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 5e-04 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 5e-04 | |
| PTZ00436 | 357 | PTZ00436, PTZ00436, 60S ribosomal protein L19-like | 5e-04 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 6e-04 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 6e-04 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 0.001 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 0.001 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 0.001 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 0.001 | |
| COG0810 | 244 | COG0810, TonB, Periplasmic protein TonB, links inn | 0.001 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 0.001 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.002 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 0.002 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.002 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 0.002 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 0.002 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 0.002 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 0.004 | |
| pfam11696 | 641 | pfam11696, DUF3292, Protein of unknown function (D | 0.004 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 0.004 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 2e-88
Identities = 98/157 (62%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Query: 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRA 964
+PT+ Y+FVIG+WNYRFR R P PH D ++S AD DELDEEFDT P++RP ++VR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHP-PHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRM 59
Query: 965 RYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMV 1024
RYD+LR++ RVQT++GD A QGER+QAL++WRDPRAT IFV C V A++LY+VP K+V
Sbjct: 60 RYDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVV 119
Query: 1025 AMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061
A+ GFYYLRHP FR RMPS LNFFRRLPS +D ++
Sbjct: 120 ALLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 9e-62
Identities = 79/151 (52%), Positives = 98/151 (64%), Gaps = 7/151 (4%)
Query: 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP 549
YLR TVIEAQD++P + +KAQLG QV +T+ S TRNG PSWNE+L+FVAAEP
Sbjct: 1 YLRVTVIEAQDLVPSDKN-RVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP 59
Query: 550 FTDQLSFTLENRQHKGSVA-LGVTRVPLTAVERRVDDRKVASRWFTFENTND-----EKR 603
F D L ++E+R LG +PL +ERRVDDR V SRWF+ E +KR
Sbjct: 60 FEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR 119
Query: 604 AYKGRVHLRLCFDGGYHVMDEAAHVCSDYRP 634
+ R+HLRLC DGGYHV+DE+ H SD RP
Sbjct: 120 KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 5e-55
Identities = 62/129 (48%), Positives = 91/129 (70%), Gaps = 2/129 (1%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
KL+VEVVDA++L+PKDG G+SS YV +D+ GQ+++T T +DLNP WNE L FNV P +
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGE 125
+ + E+ +++D+ G R +FLGR+R+S + FV E + YPLEK+ L S ++GE
Sbjct: 61 LSNLVLEVYVYNDRRSGR--RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGE 118
Query: 126 VGLKIYYVD 134
+GLK+Y D
Sbjct: 119 IGLKVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 3e-50
Identities = 66/126 (52%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 336 YLFVRVVKARFLPTKGSPVVKIAVANSRVESKPA-RRTSCFEWDQTFAFGRDSPESSSFL 394
YL+VRVVKAR LP + V + S A RTS EW+Q FAF +D S L
Sbjct: 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTL 59
Query: 395 EVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG--GGAYSGDLML 452
EVSVWD A FLGG+CFD++E+P R PPDSPLAPQWYR+E GG G+LML
Sbjct: 60 EVSVWDKD----KAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELML 115
Query: 453 ATWVGT 458
A W GT
Sbjct: 116 AVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 4e-50
Identities = 71/130 (54%), Positives = 92/130 (70%), Gaps = 5/130 (3%)
Query: 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP 706
+E+G++G + L ++ +G+ +TDAY VAKY KW+RTRTV DS PRWNEQYTW VYDP
Sbjct: 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP 61
Query: 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG 766
CTVL +GVFD+ E +PD IGKVRIR+STLE +VY ++YPLL L +G
Sbjct: 62 CTVLTVGVFDNSQSHWKEA-----VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSG 116
Query: 767 MTKMGEIEVA 776
+ KMGE+E A
Sbjct: 117 VKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 6e-18
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR---RKTHTAVRDLNPTWNEALEFNVGKP 63
L V V+ A+NL PKD +G S PYV + GQ+ +KT LNP WNE F V P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIR 94
+ ++ Y +++F+G +
Sbjct: 61 E---LAELRIEVYD---YDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-18
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
L V V++ARNL KD +G S PYV + G Q+ KT LNP WNE EF V P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE- 59
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113
+D + ++ + +++FLG + + S+ + G+E ++ PL
Sbjct: 60 --SDTLTVEVWDKDRFS---KDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-15
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ---RRKTHTAVRDLNPTWNEALEFNVGK 62
L V+++ ARNL PKD G S PYV + G ++KT LNP WNE EF V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 63 PPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGE 105
P E+ ++ +G R++F+G++ + S + G
Sbjct: 61 P---ELAELEIEVYDKDRFG---RDDFIGQVTIPLSDLLLGGR 97
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-14
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEA 55
+ ++L V V+ ARNL P DG G S PYV + ++KT LNP +NEA
Sbjct: 10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEA 69
Query: 56 LEFNVGKPPQVFTDM-FELNIFHDKAYGPTTRNNFLGRIRLSSS 98
F+V P + ++ + + + G RN +G++ L
Sbjct: 70 FSFDV--PAEQLEEVSLVITVVDKDSVG---RNEVIGQVVLGPD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-13
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQV 66
L V+V+ A L D G S P+ V++ R +THT + LNP WN+ F + +
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI----KD 58
Query: 67 FTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEV 126
D+ E+ ++ + + FLG++ + +K GE +Y L+ K L + +G +
Sbjct: 59 IHDVLEVTVYDE---DKDKKPEFLGKVAIPLLS-IKNGER--KWYALKDKKLRTRAKGSI 112
Query: 127 GLKIYYV 133
L++ +
Sbjct: 113 LLEMDVI 119
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI---RTRTVSDSLEPRWNEQYTWKV 703
+ + VI KNL P + +D YV + +T+ V ++L P WNE +T++V
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 704 YDP-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVR 741
P L + V+D + D IG+V
Sbjct: 58 TLPELAELRIEVYDY-----------DRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYD 705
+ + VI +NL NGKS D YV K +T+ V ++L P WNE + + V D
Sbjct: 1 LRVTVIEARNLPAKDL-NGKS--DPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 706 P-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLE-TGKVYRNTYPL 759
P L + V+D + D +G+V I +S L +GK PL
Sbjct: 58 PESDTLTVEVWDK-----------DRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-11
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+ V ++ ARNL D +GTS PYV + D +++KT R LNP +NE+ FN+
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNI- 75
Query: 62 KPPQVFTDM-FELNIF-HDKAYGPTTRNNFLGRIRLSS 97
P + + + + D+ +RN+ +G+I L
Sbjct: 76 -PLERLRETTLIITVMDKDR----LSRNDLIGKIYLGW 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 9 VEVVDARNLLPKD------GHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGK 62
+ V++A++L+ KD G S PYV++ Q K+ +LNP WNE E V +
Sbjct: 5 IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDE 64
Query: 63 PP--QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
P ++ ++F+ + D +FLGR+ + KKG + PLE
Sbjct: 65 VPGQELEIELFDEDPDKD---------DFLGRLSIDLGSVEKKG-FIDEWLPLE 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-10
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWK 702
T+ + +I +NL P + +D YV + +T+ V ++L P WNE + ++
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 703 VYDPCT-VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG 750
V P L + V+D + D IG+V I +S L G
Sbjct: 58 VPPPELAELEIEVYDK-----------DRFGRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
I +L+V +V+ R+L P + +G S PY + Q KT LNP WN +++F V
Sbjct: 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV--- 70
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSS-SQFVKKGEEALIYYPLEKKSLLS 120
+ D+ + +F + P ++FLGR IR++ + K+ + P+ K+ LL
Sbjct: 71 KDLEQDVLCITVFDRDFFSP---DDFLGRTEIRVADILKETKESKG-----PITKRLLLH 122
Query: 121 WIQ-GEVGLKI 130
+ GEV +K+
Sbjct: 123 EVPTGEVVVKL 133
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFN 59
QKLIV V RNL P D PYV + RRKT +LNP ++E EF
Sbjct: 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP 75
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQ 99
V ++ ++ + + K++ LG++ + S
Sbjct: 76 VSL-EELKRRTLDVAVKNSKSFLS-REKKLLGQVLIDLSD 113
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-10
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 7 LIVEVVDARNLLPKD--GHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP 64
L V VV+A++L KD G G S PY ++ QR KT T LNP WN EF +
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 65 QVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALIYYPLEKKS--LLS 120
+ I DK ++LG I L K ++ + L+ S
Sbjct: 63 NQLLKL----ILWDKDRF--AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTS 116
Query: 121 WIQGEVGLK 129
+ GE+ L+
Sbjct: 117 VVSGEIHLQ 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-----RKTHTAVRDLNPTWNEALEFN 59
+LIV V+ AR+L P+D +PYV + R R+T T + LNP WN+ E++
Sbjct: 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS 75
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALIYYPLE 114
+ + E+ ++ Y N+FLG I L+ + ++ +YPL+
Sbjct: 76 NVRRETLKERTLEVTVWD---YDRDGENDFLGEVVIDLADALL----DDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-09
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 24/111 (21%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNV 60
KL VEV +A+NL+P D +G S PYV + ++KT T + LNP WNE F++
Sbjct: 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL 73
Query: 61 GKPPQVFTDMFELNIFHDKA-------YGPTTRNNFLGRIRLSSSQFVKKG 104
D D+ + TTRN+F+G + S+ +K
Sbjct: 74 KP-----AD-------KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKMP 112
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-09
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
+L V++AR+L PKD +GTS P+V + Y GQ +T + P WNE EF + +
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE 106
+ ++ + ++N+FLG++ S + +E
Sbjct: 61 ---SPLSVEVWD---WDLVSKNDFLGKVVFSIQTLQQAKQE 95
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 9e-09
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 336 YLFVRVVKARFLPTKGS-----PVVKIAVANSRVE---SKPARRTSCFEWDQTFAFGRDS 387
L V+++ AR LP K P VK+++ E +K + T W++TF F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 388 PESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPD 430
PE + LE+ V+D D F+G + ++++ L +
Sbjct: 61 PE-LAELEIEVYD---KDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFN-----VGKP 63
V V+ AR LL K GT+ YV+I ++ T + +P W E F G
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLS-SSQFVKKGEEALIYYPLEKK 116
+ +L + H G + FLG++ + + KG ++ LE K
Sbjct: 63 NR---ATLQLTVMHRNLLGL---DKFLGQVSIPLNDLDEDKGRRRTRWFKLESK 110
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 668 TTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFD 716
++D YVV ++ ++TR + +L P WNE+ T V +P L L VFD
Sbjct: 21 SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-08
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L+ KD GTS PYV + +++T T ++LNP WNE F
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-- 59
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL---------------IY 110
+D ++ ++ + ++ R++ +F ++ ++ L ++
Sbjct: 60 --SDRIKVRVWDED-------DDIKSRLK---QKFTRESDDFLGQTIIEVRTLSGEMDVW 107
Query: 111 YPLEKKSLLSWIQGEVGLKI 130
Y LEK++ S + G + L I
Sbjct: 108 YNLEKRTDKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-08
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNV 60
L V+V+ A NL D +G S P+V G++ KT T + LNP WNE+ E V
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV 55
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 18/142 (12%)
Query: 11 VVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDM 70
VV +NL G + + G ++KT +LNP WNE E+ + P +
Sbjct: 2 VVSLKNLPGL--KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDES 58
Query: 71 FELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL--EKKSLLSWIQGEVGL 128
E+ + K Y RN +G +S V +G + PL + L
Sbjct: 59 LEIVV---KDYEKVGRNRLIGSATVSLQDLVSEG-LLEVTEPLLDSNGRP---TGATISL 111
Query: 129 KIYYVDIVPTPPPAALAPVPQP 150
++ Y PP
Sbjct: 112 EVSY------QPPDGAVGGWAD 127
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
L V VV NL +D +S PYVV+ Q+ KT ++LNP WNE L +V P
Sbjct: 3 LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61
Query: 66 V 66
Sbjct: 62 P 62
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+L V V +A+NL GTS +V ++KT + +NP WN ++
Sbjct: 28 ELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDG 87
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKG 104
P + EL ++ + + N+FLG +RL G
Sbjct: 88 VSPEDLSQACLELTVWD---HDKLSSNDFLGGVRLGLGTGKSYG 128
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 14/108 (12%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAVANSRV-ESKPARRTSCFEWDQTFAFGRDSPES 390
L V V++AR LP K P VK+++ + ++K + T W++TF F
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEF-PVLDPE 59
Query: 391 SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWY 438
S L V VWD D + FLG + ++E+ W
Sbjct: 60 SDTLTVEVWD---KDRFSKDDFLGEVEIPLSELLDSGKEG----ELWL 100
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-07
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVID------YYGQR-RKTHTAVRDLNPTWNE 54
A+ Q L VE+++ARNLLP D +G+S P+V ++ + KT + L P ++E
Sbjct: 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDE 72
Query: 55 ALEFNV 60
+ EFNV
Sbjct: 73 SFEFNV 78
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQLG-FQVQKTKVSVTRNGTPSWNEDLLFVAAEP 549
LR TVIEA+++ K + +K LG Q KTKV V P WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPY-VKVSLGGKQKFKTKV-VKNTLNPVWNETFEFPVLDP 58
Query: 550 FTDQLSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVASRWFT 594
+D L+ + ++ LG +PL+ + D K W
Sbjct: 59 ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL---DSGKEGELWLP 101
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVID-YYGQRR----KTHTAVRDLNPTWNEAL 56
+L V V+ AR+L D G + PYV ++ YYG++R KTH LNP +NE+
Sbjct: 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESF 71
Query: 57 EFNVGKPPQVFTDM-FELNIF-HDKAYGPTTRNNFLGRIRLSSS 98
F++ P + D+ E + D+ T+N +GR+ L
Sbjct: 72 VFDI--PSEELEDISVEFLVLDSDR----VTKNEVIGRLVLGPK 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-07
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 19/139 (13%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRR-------KTHTAVRDLNPTWNEALEFN 59
L V+V+ +L KD G S PYV I Y +T T + LNP WNE F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALI---YYPLE 114
V P+ +FE+ F + TR++FLG+ + L++ G E Y L
Sbjct: 62 VN--PREHRLLFEV--FDENR---LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLR 114
Query: 115 KKSLLSWIQGEVGLKIYYV 133
+S S ++G + L + Y+
Sbjct: 115 PRSSKSRVKGHLRLYMAYL 133
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAVANSRVE---SKPARRTSCFEWDQTFAFGRDSP 388
L V V+ A+ LP K P VK+++ + + +K + T W++TF F +
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTF-EVTL 59
Query: 389 ESSSFLEVSVWD 400
+ L + V+D
Sbjct: 60 PELAELRIEVYD 71
|
Length = 85 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
+ LIV ++ NL D +G S P+V + + KT + LNP +NE ++
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGE 105
+ K + E+ ++ DK G + N+++G ++L + KGE
Sbjct: 73 I-KHSDLAKKTLEITVW-DKDIGKS--NDYIGGLQLGINA---KGE 111
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFT 68
+ +V+ +NL P D +G S PYV ++ K+ + LNP W E + + +F
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLH------LFD 57
Query: 69 D---MFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALIYYPLEK 115
D + E+ ++ ++ F+GR I LS+ + + + + LE
Sbjct: 58 DQSQILEIEVWD---KDTGKKDEFIGRCEIDLSA---LPREQTHSLELELED 103
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKI-----AVANSRVESKPARRTSCFEWDQTFAFGRD 386
L V V++AR LP + P VK+ S+ +K ++T EW+QTF +
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 387 SPES--SSFLEVSVWDPPR--GDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME 441
E+ LEV+VWD R + FLG + D+ + L D P WY ++
Sbjct: 78 RRETLKERTLEVTVWDYDRDGEND-----FLGEVVIDLADALLDD------EPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVI-DYYGQRR--KTHTAVRDLNPTWNEALEFNVGKPPQ 65
+ +V A NL +G S PYV + D G+RR KT T LNP W+E E V P
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV---PA 61
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQF 100
++ G +++ GR ++L +F
Sbjct: 62 GEPLWISATVWDRSFVG---KHDLCGRASLKLDPKRF 95
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVY 704
G +++ VI L + GKS D + V + + ++T T+ +L P WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGL-AAADIGGKS--DPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 705 DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
D VL + V+D E ++ E +GKV I + +++ G+ R Y L
Sbjct: 58 DIHDVLEVTVYD-----EDKDKKPEF------LGKVAIPLLSIKNGE--RKWYAL 99
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-06
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQLG---FQVQKTKVSVTRNGTPSWNEDLLFVAA 547
LR TVI A++ LPP ++ +K LG +KTKV V P WNE F
Sbjct: 1 LRVTVISAKN-LPPKDLNGKSDPYVKVSLGGQKKDTKKTKV-VKNTLNPVWNETFTFEVT 58
Query: 548 EPFTDQLSFTLENRQHKGS 566
P +L + + G
Sbjct: 59 LPELAELRIEVYDYDRFGK 77
|
Length = 85 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 490 YLRATVIEAQDILPPVAALKEASFTIKAQLG---FQVQKTKVSVTRNGTPSWNEDLLFVA 546
L +I A+++ P K + +K L + +KTKV V P WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPY-VKVSLDGDPKEKKKTKV-VKNTLNPVWNETFEFEV 58
Query: 547 AEPFTDQLSFTLENRQHKGS-VALGVTRVPLTAVERR 582
P +L + ++ G +G +PL+ +
Sbjct: 59 PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 34/146 (23%)
Query: 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI--RTRTVSDSLEPRWNEQYTW 701
+G + + + + L + G T D YV +++ RT+ D+ P WNE
Sbjct: 1 IGVLAVTIKSARGLKGSDIIGG--TVDPYVTFSISNRRELARTKVKKDTSNPVWNE---- 54
Query: 702 KVY-------DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYR 754
Y +P L L V+D N R D IG +S+L
Sbjct: 55 TKYILVNSLTEP---LNLTVYD-------FNDK----RKDKLIGTAEFDLSSLLQNPEQE 100
Query: 755 N-TYPLLLLGSNGMTKMGEIEVAVRF 779
N T LL NG GE+ +RF
Sbjct: 101 NLTKNLL---RNGKPV-GELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 7e-06
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNE 54
+L + + + RNL +D GTS PYV Y G K+ T ++LNP W+E
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDE 50
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-06
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 21/107 (19%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDY-----YGQRRKTHTAVRDLNPTWNEALEFNV 60
L ++ A+ L D +G S PYV ++ + +T T + NP +NE L +
Sbjct: 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTY-Y 74
Query: 61 GKPPQVFTDM------FELNIFHDKAYGPTTRNNFLGRIRLSSSQFV 101
G T+ L + + +G N+FLG R+ +
Sbjct: 75 G-----ITEEDIQRKTLRLLVLDEDRFG----NDFLGETRIPLKKLK 112
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-06
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 13 DARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMF 71
A +L +G G PYV + G + +T T LNP W+E L V P Q T
Sbjct: 9 KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKIT--- 65
Query: 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEA-LIYYPLEKKSL 118
L + D Y ++ LG + ++ S +KK E+ + Y E++ L
Sbjct: 66 -LEVM-D--YEKVGKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERL 109
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVI----DYYGQRRKTHTAV--RDLNPTWNEALEF 58
L ++++ A L KD GTS P+V I D ++ K T V ++LNP WNE F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPD---KKHKLETKVKRKNLNPHWNETFLF 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 668 TTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFD-SWGIFEGEN 725
T+D YV KY K + +++T+ +L P W+E++T + D L + VFD G+ +
Sbjct: 20 TSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFM 79
Query: 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAV 777
GS + +STLE K L L N +G I + V
Sbjct: 80 GSAF------------VDLSTLELNKPTEVK--LKLEDPNSDEDLGYISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRD-LNPTWNEALEFNVGKPPQ 65
L V ++ A+ L D G PYV+I Q RK+ A D NP WNE +F V P
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 66 VFTDMFELNIF-HDKAYGPTTRNNFLG 91
L I D + ++F+G
Sbjct: 63 GGDTKLILRIMDKDNF----SDDDFIG 85
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Query: 2 AAIQKLIVEVVDARNLLPKD-GHGTSSPYV----VIDYYGQ-RRKTHTAVRDLNPTWNEA 55
+++L V V+ ++L D S PYV + D + +RKT + LNP +NE
Sbjct: 12 PKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNET 71
Query: 56 LEFNVGK---PPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYP 112
L + V + P +V L+++H + G RN+FLG + + + +YP
Sbjct: 72 LRYKVEREELPTRVLN----LSVWHRDSLG---RNSFLGEVEVDLGSW-DWSNTQPTWYP 123
Query: 113 LE 114
L+
Sbjct: 124 LQ 125
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 48/178 (26%), Positives = 58/178 (32%), Gaps = 17/178 (9%)
Query: 138 TPPPAALAPVPQPDPPA---KEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPEN 194
P AA APV QP P A P P A AA P AA A A PAPE
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432
Query: 195 KEPAGDIEPQCDTS-SAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSD 253
A + AP A A +P+ P A AA +
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAG-------------PRPVAAAAAAA 479
Query: 254 HVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMSTA 311
AA + P PP P S + A +A AG + + P P + A
Sbjct: 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDA 537
|
Length = 700 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP 706
V+ ++L+P +G+ ++ AYV + + RTRT L P WNE+ + V DP
Sbjct: 6 VVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY--GQR---RKTHTAVRDLNPTWNEALEFNV 60
+L + ++ ARNL D G S PYV + G+R +KT LNPT+NEAL F+V
Sbjct: 15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDV 74
Query: 61 GKPPQ 65
PP+
Sbjct: 75 --PPE 77
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTH---TAVR--DLNPTWNEALEFN 59
++L V VV ARNL+ +G T+ P+V + RK T+V+ D NP +NEA+ F+
Sbjct: 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS 74
Query: 60 VGKPPQVFTDM 70
V P V D+
Sbjct: 75 V--PAIVLQDL 83
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 6e-05
Identities = 46/180 (25%), Positives = 58/180 (32%), Gaps = 8/180 (4%)
Query: 136 VPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENK 195
PT PP P P P V P V + + P +PAA V A PA
Sbjct: 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRS 2894
Query: 196 EPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAP-SDH 254
E PE+ + QP Q P+ P AP +D
Sbjct: 2895 T-----ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDP 2949
Query: 255 VMAASVSGSVPEVKV--TPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMSTAS 312
A SG+VP+ + P P R A A A + P +SR S AS
Sbjct: 2950 AGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWAS 3009
|
Length = 3151 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY--GQR---RKTHTAVRDLNPTWNEALEFNV 60
KL V +++A+NL D G S PYV I G+R +KT R LNP +NE+ F V
Sbjct: 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV 75
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 5 QKLIVEVVDARNL-LPKDGHG-TSSPYVVIDYYG------QRRKTHTAVRD--LNPTWNE 54
L ++++ + L PK G PYV ++ +G + KT V++ NP WNE
Sbjct: 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKV-VKNNGFNPVWNE 60
Query: 55 ALEFNV 60
EF+V
Sbjct: 61 TFEFDV 66
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYV------VAKYASKWIRTRTVSDSLEPRWNEQ 698
+ + V KNL+PM NG S D YV K +K +T+T+ +L P WNE
Sbjct: 13 NKLTVEVREAKNLIPMDP-NGLS--DPYVKLKLIPDPKNETKQ-KTKTIKKTLNPVWNET 68
Query: 699 YTWKV 703
+T+ +
Sbjct: 69 FTFDL 73
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 43/142 (30%)
Query: 2 AAIQKLIVEVVDARNLLPKDGHGTSSPY-----VVIDYYGQRRKT--------HTAVRD- 47
I L V V++A+ LL KD +G S PY V K+ ++D
Sbjct: 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDT 84
Query: 48 ---------------LNPTWNEALEFNVGKPPQVFTDMFELNIF-HDKAYGPTTRNNFLG 91
LNP WNE F V V D L+I+ HD ++FLG
Sbjct: 85 VPAKSIKVTEVKPQTLNPVWNETFRFEVE---DVSNDQLHLDIWDHD--------DDFLG 133
Query: 92 RIRLSSSQFVKKGEEALIYYPL 113
+ + G ++ ++ L
Sbjct: 134 CVNIPLKDLPSCGLDS--WFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTH-TAV--RDLNPTWNEALEFNV 60
+L V ++ A +L D GTS PYV + ++K T V + LNP +NE F V
Sbjct: 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKV 74
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 655 KNLLPMKTVNGKSTTDAYVV-----AKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTV 709
KNL PM NG S D YV KY SK S +L P+W EQ+ ++D
Sbjct: 10 KNLPPMD-DNGLS--DPYVKFRLGNEKYKSK-----VCSKTLNPQWLEQFDLHLFD---- 57
Query: 710 LALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLE 748
D I E E +T + D IG+ I +S L
Sbjct: 58 ------DQSQILEIEVWDKDTGKKDEFIGRCEIDLSALP 90
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 31/130 (23%), Positives = 41/130 (31%), Gaps = 10/130 (7%)
Query: 139 PPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKEPA 198
P AA AP P P A A A +P PA P
Sbjct: 399 PSAAAAAPAAAPAPAAAAPAAAAAPAP-AAAPQPAPAPA--------PAPAPPSPAGNAP 449
Query: 199 GDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDL-TTSKAGPKAPAAPSDHVMA 257
P ++AP A A +P+ + A P APAAP+ A
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509
Query: 258 ASVSGSVPEV 267
A++ PE+
Sbjct: 510 ATLRERWPEI 519
|
Length = 824 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 5 QKLIVEVVDARNLLPKD-GHGTSSPYVVIDYY-------GQRRKTHTAVRDLNPTWNEAL 56
L V + + RNL D S+PYV + Y +RKT NP +NE L
Sbjct: 14 GSLEVHIKECRNLAYADEKKKRSNPYVKV--YLLPDKSKQSKRKTSVKKNTTNPVFNETL 71
Query: 57 EFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEALIYYPL 113
++++ K Q+ T +L+++H +G RN FLG I L S + E +YPL
Sbjct: 72 KYHISK-SQLETRTLQLSVWHHDRFG---RNTFLGEVEIPLDSWDLDSQQSE---WYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|219008 pfam06398, Pex24p, Integral peroxisomal membrane peroxin | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 37/193 (19%), Positives = 67/193 (34%), Gaps = 30/193 (15%)
Query: 859 FRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDLIVPTLAFYVFVIGVW 918
F + +L V+ IL W + T + L+ + LV + L+ L +F I V
Sbjct: 23 FPYLLILDKVLRILTWTNPD-----YTLSFLLVYTFICLVPYLLLVSLPLGPLLFGIMVP 77
Query: 919 NYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQT 978
Y +R P+ SL + E T+ A EIV LR L ++
Sbjct: 78 GYLWRHS-----PLPRSSLISSDLNPTPAEG-PTLDEAESMEIVLN----LRDLQNKMTL 127
Query: 979 LL------GDF---AAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFG 1029
LL F + E + L+ + + ++ + + ++ +
Sbjct: 128 LLSPIDFLEKFLYPFFKDEDLSTLLF------LTLLLTPIYIFLTLPLIPWRLILLILGA 181
Query: 1030 FYYLRHPMFRDRM 1042
F HP + +
Sbjct: 182 FLLTYHPSWSRVL 194
|
Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p. Length = 360 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 655 KNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALG 713
K + + K +D YV+ + ++ +++ + ++L P+WNE Y V + P L +
Sbjct: 18 KFVGGLV----KGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIE 73
Query: 714 VFD 716
+FD
Sbjct: 74 LFD 76
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-04
Identities = 37/186 (19%), Positives = 56/186 (30%), Gaps = 12/186 (6%)
Query: 137 PTPPPAALAPVPQPDPPAKEV-----KPDPTVEAKAEA-AKPNEEPAADHEAKVDAEAVP 190
P PPAA A P A+ V + P EA A A P A P
Sbjct: 399 PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAP 458
Query: 191 APENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAA 250
A + A P ++A A + + A
Sbjct: 459 AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF------ASPAPA 512
Query: 251 PSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMST 310
D A V+ S+P+ P + + ++ + + A A A P+ P+P + S
Sbjct: 513 QPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
Query: 311 ASFASD 316
D
Sbjct: 573 LPDMFD 578
|
Length = 700 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 8/155 (5%)
Query: 133 VDIVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAP 192
+V PV +P +EV T + AA E+P E+ V A A
Sbjct: 885 APVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDV-AVAQEVA 943
Query: 193 ENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPK-APAAP 251
E+ EP +EPQ +T+ E + E + + + + + ++
Sbjct: 944 EHAEPV--VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
Query: 252 SDHVMAASVSG----SVPEVKVTPPSCSPQPISRS 282
+ + + + P + P P+ S
Sbjct: 1002 APAQVPEATVEHNHATAPMTRAPAPEYVPEAPRHS 1036
|
Length = 1068 |
| >gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 27/163 (16%), Positives = 42/163 (25%), Gaps = 12/163 (7%)
Query: 137 PTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPN------EEPAADHEAKVDAEAVP 190
+ + V P VEA AE + + E +
Sbjct: 862 EEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVETTHPEVIA 921
Query: 191 APENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAA 250
AP ++P I D + A E + E Q + IE T++ P
Sbjct: 922 APVTEQPQV-ITES-DVAVAQEVAEHAEPVVEPQDETAD----IEEAAETAEVVVAEPEV 975
Query: 251 PSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATA 293
+ + VT P + ATA
Sbjct: 976 VAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATA 1018
|
Length = 1068 |
| >gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVV--IDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
K+ + V+ A L +D P+ V +D GQ T A + L+P WNE + VG
Sbjct: 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKTLDPKWNEHFDLTVGP- 58
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFV 101
+ + + +F K + FLG +R+ ++ +
Sbjct: 59 ----SSIITIQVFDQKKFKKKD-QGFLGCVRIRANAVL 91
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAV-RDLNPTWNEALEFNVGKPP 64
L V V++A++L+P D + +V Q +T + R+ NP+WNE L F +P
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP- 59
Query: 65 QVFTDM 70
F D
Sbjct: 60 --FEDH 63
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 342 VKARFLPTKGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE--SSSFLEVSVW 399
VK LP K S+ ++ +++ W+ TF + SPE S + LE++VW
Sbjct: 52 VKCYLLPDKSK--------KSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW 103
Query: 400 DPPRGDVAAPPGFLGGICF 418
D D + FLGG+
Sbjct: 104 DH---DKLSSNDFLGGVRL 119
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 23/118 (19%), Positives = 32/118 (27%), Gaps = 5/118 (4%)
Query: 136 VPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENK 195
P AA P P A P A A A P ++ E A PAP
Sbjct: 455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP 514
Query: 196 EPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSD 253
+ A S P+ A+ + A ++ + P P
Sbjct: 515 DAA---PAGWVAESIPDPATADPDDAF--ETLAPAPAAAPAPRAAAATEPVVAPRPPR 567
|
Length = 700 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 20/106 (18%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDY----YGQRRKTHTAVRDLNPTWNEALEFNVGK 62
L V V++ R+L K GT P+ + ++T + NP ++EA F +
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 63 P----------PQVFTDMFELNI--FHDKAYGPTTRNNFLGRIRLS 96
+ + EL + +H + ++FLG +R+
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHA---SMVSGDDFLGEVRIP 102
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 27 SPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78
PYV + + GQ+ KT NP WNE + F PP + ++ I
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPP--LCERIKIQIRDW 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (101), Expect = 5e-04
Identities = 38/146 (26%), Positives = 54/146 (36%), Gaps = 21/146 (14%)
Query: 139 PPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKEPA 198
P AA AP PPAK A A AK PA A A PA PA
Sbjct: 222 PAKAAAAPAKAAAPPAK---------AAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPA 272
Query: 199 GDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVMAA 258
P ++ P + A +A P+ + A KA AAP+
Sbjct: 273 KAAAPPAKAAAPPAKAAAPPAKAAAAPA------------KAAAAPAKAAAAPAKAAAPP 320
Query: 259 SVSGSVPEVKVTPPSCSPQPISRSAS 284
+ + + P TPP+ + P +++A+
Sbjct: 321 AKAAAPPAKAATPPAKAAAPPAKAAA 346
|
Length = 357 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 6e-04
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQR--RKTHTAVRDLNPTWNEALEFN 59
V VV ARNL PKD +G S PY+ I ++ + + LNP + + E
Sbjct: 4 VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELE 56
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 29/157 (18%), Positives = 46/157 (29%), Gaps = 16/157 (10%)
Query: 137 PTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKE 196
P AA A + + P P T + +AA + A A+ A++ + +
Sbjct: 410 LAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQ 469
Query: 197 PAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVM 256
P D +S A E R + A P
Sbjct: 470 PPADSGSASAPASDAPPDAAFEPAPRAAAP----------------SAATPAAVPDARAP 513
Query: 257 AASVSGSVPEVKVTPPSCSPQPISRSASMASFASATA 293
AA+ P P + P +A+ A+ A A
Sbjct: 514 AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAA 550
|
Length = 830 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP-CTV 709
V+ K+L K +GK +D Y + ++ +T+T+ ++L P+WN + ++ +
Sbjct: 7 VVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQL 65
Query: 710 LALGVFDS 717
L L ++D
Sbjct: 66 LKLILWDK 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQ 65
L + +V+ +NL KD G+S PY ++ + +T T + LNP W E E+ V PP
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGE--EYTVHLPPG 59
Query: 66 VFTDMF----ELNIFHDKAYG 82
T F E + D G
Sbjct: 60 FHTVSFYVLDEDTLSRDDVIG 80
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDY-YGQR----RKTHTAVRDLNPTWNEALEFNV 60
+L V+++ A+ LL D S P+V I +G + +KT ++P +NE+ F V
Sbjct: 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKV 74
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRI 93
P + ++ + + + + N+F+GRI
Sbjct: 75 --PQEELENVSLVFTVYG--HNVKSSNDFIGRI 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRD-LNPTWNEALEFNVGKPPQ 65
L+V V+ ARNL K PY V+ G +KT T R +P W+E L F +
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEI--TED 60
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGE 105
+ ++ +F D P +G + S +K+GE
Sbjct: 61 KKPIL-KVAVFDDDKRKPD----LIGDTEVDLSPALKEGE 95
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 135 IVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPEN 194
PP P+P PP KP + + + KP +P + K + P P+
Sbjct: 64 EEQPKPPTEPETPPEPTPP----KPKEKPKPEKKPKKPKPKPKP--KPKPKPKVKPQPKP 117
Query: 195 KEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGH 233
K+P +AP Q A + S
Sbjct: 118 KKPPSKTAA--KAPAAPNQPARPPSAASASGAATGPSAS 154
|
Length = 244 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 5 QKLIVEVVDARNLLPKD-GHGTSSPYV----VIDYYGQ-RRKTHTAVRDLNPTWNEALEF 58
Q L V V + RNL D S+PYV + D Q +RKT NP +NE L++
Sbjct: 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY 74
Query: 59 NVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGR--IRLSSSQFVKKGEEAL 108
++ Q+ T +L+++H Y RN FLG I L S F + EE L
Sbjct: 75 SISH-SQLETRTLQLSVWH---YDRFGRNTFLGEVEIPLDSWNFDSQHEECL 122
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%)
Query: 14 ARNLLP---KDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFT-D 69
A+ L KDG G++ Y V Y + +T T NP WNE + V P V T
Sbjct: 9 AQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVG 68
Query: 70 MFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIY---YPL 113
+F+ + H K +G++R+ S E+ +Y YPL
Sbjct: 69 VFDNSQSHWKEAVQPDV--LIGKVRIRLSTL----EDDRVYAHSYPL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
+G + + ++ ++L P NGKS D Y S+ +T+ VSD+L P+WN + V
Sbjct: 14 IGRLMVVIVEGRDLKPCN-SNGKS--DPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70
Query: 704 YD-PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIS 745
D VL + VFD F PD +G+ IR++
Sbjct: 71 KDLEQDVLCITVFDR-DFFS----------PDDFLGRTEIRVA 102
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYV------VAKYASKWIRTRTVSDSLEPRWNEQYTW 701
+I K L M NG S D YV A A+ +RT+TV + P +NE T+
Sbjct: 21 IIRAKGLKAMD-ANGLS--DPYVKLNLLPGASKAT-KLRTKTVHKTRNPEFNETLTY 73
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 31/129 (24%), Positives = 48/129 (37%), Gaps = 36/129 (27%)
Query: 337 LFVRVVKARFLPTKGS----PVVKIAVANSRV----ESKPARRTSCFEWDQTFAF---GR 385
L VRV++ R L K + P ++ + S +K ++T+ +D+ F F
Sbjct: 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 386 DSPESSSF---------LEVSV----WDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSP 432
S E SF E+ V GD FLG + IPL+
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD-----FLGEV-----RIPLQ-GLQQA 109
Query: 433 LAPQ-WYRM 440
+ Q WY +
Sbjct: 110 GSHQAWYFL 118
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 16/123 (13%)
Query: 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCF-EWDQTFAFGRDSPE 389
L V V+KAR LP K P + + ++K R EWD+ F + +
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEI-TED 60
Query: 390 SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGD 449
L+V+V+D D P +G D++ D WY + G Y+G+
Sbjct: 61 KKPILKVAVFD----DDKRKPDLIGDTEVDLSPALKEGEFD-----DWYELTLKGRYAGE 111
Query: 450 LML 452
+ L
Sbjct: 112 VYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 31/130 (23%)
Query: 14 ARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV----GK------- 62
AR+LL D G S P+ + + Q ++T L+PTW++ L F+ G
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69
Query: 63 PPQVFTDMFELNIFHDKAYGPTTRNNFLGR------IRLSSSQFVKKGEEALIYYPLEKK 116
PP V + +F + G + FLGR ++L + L ++P+ K
Sbjct: 70 PPLVV-----VELFDQDSVGK---DEFLGRSVAKPLVKLDLEEDFP---PKLQWFPIYKG 118
Query: 117 SLLSWIQGEV 126
GE+
Sbjct: 119 ---GQSAGEL 125
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 9 VEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFT 68
V V++AR L+ G P V ++ GQ++ T P +NE FN + P
Sbjct: 8 VRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELF 63
Query: 69 D-MFELNIFHDK 79
D + +++++ +
Sbjct: 64 DKIIKISVYDSR 75
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQ 65
L + + NL D +G S P+V + + KT + LNP WNE EF + +
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNE--EFTIEVLNR 1099
Query: 66 VFTDMFELNIF 76
V D+ +N+
Sbjct: 1100 V-KDVLTINVN 1109
|
Length = 1227 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 17/96 (17%)
Query: 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFG-RDSPE 389
+L V+V++A L K P + + N+R+++ +T EW++ F F +D
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--- 58
Query: 390 SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPL 425
LEV+V+D + P FLG + IPL
Sbjct: 59 IHDVLEVTVYDEDKDK---KPEFLGKV-----AIPL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|221170 pfam11696, DUF3292, Protein of unknown function (DUF3292) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 827 ARSEPPLRRETVLCMLDADSHAFSMRKVRANWFRI-INVLAGVIDILRWADDTRSWKNPT 885
A + PL+R L + A+ FS K+RA R V+ G+ + ++ RSW+ P
Sbjct: 68 AVPDAPLQR---LDLNRAEDEQFSPDKLRATLERFYTTVVVGLTNFVKHIARLRSWREPR 124
Query: 886 ATILVHALLVMLVWFPDLIVPTLAFYVFVIGVW 918
T + + W DL+VPT+ ++ + +W
Sbjct: 125 RTAAF-CAVYFVAWLLDLLVPTIFGFLITLVLW 156
|
This eukaryotic family of proteins has no known function. Length = 641 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 33/158 (20%), Positives = 55/158 (34%), Gaps = 19/158 (12%)
Query: 134 DIVPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPE 193
D +PT PA A +P+P A D + P P A + A + A
Sbjct: 137 DQLPTARPAYPAYQQRPEPGAWPRAADDYGWQQQRLGFP---PRAPY-ASPASYAPEQER 192
Query: 194 NKEPAGDIEPQCDT------SSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKA 247
++EP P+ D P+ + ++ +P +GH+ + GP
Sbjct: 193 DREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDR-TDRPEPPPGAGHVH------RGGPGP 245
Query: 248 PAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASM 285
P V+ S P P+ +P P +A +
Sbjct: 246 PERDDAPVVPIRPSAPGPLAA--QPAPAPGPGEPTARL 281
|
Length = 617 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 25/92 (27%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 136 VPTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPA-ADHEAKVDAEAVPAPEN 194
P PAA A P P A P P A A A A A APE
Sbjct: 402 APAAAPAAAASAPAAPPAA--APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPET 459
Query: 195 KEPAGDIEPQCDTSSAPEQVQANEEQARQQPS 226
+ P+ +SA A AR P+
Sbjct: 460 VAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
|
Length = 618 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1061 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.95 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.91 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.9 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.86 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.85 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.85 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.85 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.83 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.82 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.81 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.79 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.78 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.78 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.77 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.76 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.76 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.76 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.75 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.75 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.75 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.75 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.75 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.75 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.74 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.74 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.74 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.74 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.74 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.73 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.73 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.73 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.73 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.72 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.72 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.72 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.71 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.71 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.71 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.71 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.71 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.7 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.7 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.7 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.7 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.69 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.69 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.69 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.69 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.69 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.69 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.69 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.68 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.68 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.68 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.68 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.68 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.68 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.67 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.67 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.67 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.67 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.67 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.66 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.66 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.66 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.66 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.66 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.66 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.66 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.66 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.64 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.64 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.64 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.64 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.64 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.64 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.64 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.63 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.63 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.63 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.63 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.63 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.63 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.63 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.63 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.62 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.62 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.62 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.62 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.62 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.62 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.61 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.61 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.61 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.61 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.61 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.6 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.6 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.6 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.6 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.6 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.59 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.59 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.59 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.59 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.59 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.58 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.58 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.58 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.58 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.57 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.57 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.57 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.57 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.57 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.57 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.57 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.57 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.57 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.57 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.56 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.56 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.56 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.56 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.55 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.55 | |
| PLN03008 | 868 | Phospholipase D delta | 99.55 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.55 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.53 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.53 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.53 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.53 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.53 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.53 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.52 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.52 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.52 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.52 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.52 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.51 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.51 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.51 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.51 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.5 | |
| PLN03008 | 868 | Phospholipase D delta | 99.5 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.5 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.49 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.49 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.48 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.48 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.48 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.48 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.47 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.47 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.47 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.47 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.46 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.46 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.45 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.45 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.44 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.44 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.43 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.43 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.43 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.43 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.43 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.43 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.42 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.42 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.42 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.42 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.41 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.41 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.4 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.34 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.31 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.31 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.29 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.28 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.17 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 99.17 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.15 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.11 | |
| PLN02270 | 808 | phospholipase D alpha | 99.09 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.08 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.06 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.02 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.02 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.99 | |
| PLN02270 | 808 | phospholipase D alpha | 98.98 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 98.95 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.94 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.93 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.9 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.85 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.82 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.81 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.8 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.79 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.79 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.71 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.68 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.67 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.66 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.66 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.65 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.65 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.63 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.58 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.47 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.34 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.29 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.29 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.96 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.96 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.88 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.63 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.6 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.44 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.35 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.34 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.29 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.19 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.03 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.74 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.5 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.44 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.18 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.72 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.59 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.1 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.0 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.68 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.3 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.53 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.42 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.32 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.7 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.65 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 92.55 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 91.76 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.45 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.45 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 91.32 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.19 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 91.06 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 90.8 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 90.78 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.36 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.64 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 87.79 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 84.65 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 84.52 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 83.37 | |
| PTZ00447 | 508 | apical membrane antigen 1-like protein; Provisiona | 82.56 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 82.15 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=311.47 Aligned_cols=156 Identities=58% Similarity=1.110 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001521 905 VPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFA 984 (1061)
Q Consensus 905 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va 984 (1061)
+|+++++++++++|||+++|+.|+ |+|.++|.++..++||+|||+|++|+.++++++++||+++++++++|||++|++|
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~-~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~A 79 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPP-HMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVA 79 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCC-CCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccCCCCChhhHHhhcCCCCccCCC
Q 001521 985 AQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDRMPSPALNFFRRLPSLSDRIM 1061 (1061)
Q Consensus 985 ~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~~~p~~~~~~~~r~Ps~~~~~~ 1061 (1061)
+++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|++|||++|.++||.++|||+||||++|+||
T Consensus 80 t~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 80 TQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=351.43 Aligned_cols=543 Identities=18% Similarity=0.250 Sum_probs=392.2
Q ss_pred CCcEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKD--GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
+.|+|.|+|.+|++|...+ .++..|||+++.+.+ ...||++.++++||+|||+|++.+.... +.|.++|||.+
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n 509 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFN 509 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecc
Confidence 5799999999999999888 489999999999866 5679999999999999999999999764 88999999998
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTPPPAALAPVPQPDPPAKEVKP 159 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1061)
.. ++|+.+|.+.++|..|...+...++-+.+.. .+...|+|+..+.|++...+...
T Consensus 510 ~~---~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~------------------ 565 (1227)
T COG5038 510 SF---KSDKVVGSTQLDLALLHQNPVKKNELYEFLR---NTKNVGRLTYDLRFFPVIEDKKE------------------ 565 (1227)
T ss_pred cc---CCcceeeeEEechHHhhhccccccceeeeec---cCccceEEEEeeeeecccCCccc------------------
Confidence 88 6899999999999998776655444444332 23468999999999985432111
Q ss_pred CCccccccccCCCCCCCccccccccccccCCCCCCCCCCCCCCCCcCCCCCchhhhchhhhhhcCCccccccCccccccc
Q 001521 160 DPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKEPAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLT 239 (1061)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1061)
. ... +|
T Consensus 566 -~------------------------------------~~s-----~e-------------------------------- 571 (1227)
T COG5038 566 -L------------------------------------KGS-----VE-------------------------------- 571 (1227)
T ss_pred -c------------------------------------ccc-----cC--------------------------------
Confidence 0 000 00
Q ss_pred cccCCCCCCCCCCccccccccCCCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCccccccccCCCCCC
Q 001521 240 TSKAGPKAPAAPSDHVMAASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNIPINGPQPISRTMSTASFASDITD 319 (1061)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 319 (1061)
+. ++.
T Consensus 572 ------------------------------------~~---------------------------------ed~------ 576 (1227)
T COG5038 572 ------------------------------------PL---------------------------------EDS------ 576 (1227)
T ss_pred ------------------------------------Cc---------------------------------ccC------
Confidence 00 000
Q ss_pred CCCcccccccccccccEEEEEEEEeecCCC----CCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeE
Q 001521 320 NIPIERSSFDLVEKMHYLFVRVVKARFLPT----KGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFL 394 (1061)
Q Consensus 320 ~~~~~~~~~dl~~~~~~L~V~v~~a~~L~~----~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L 394 (1061)
..|++-+.+.+.++|.. +..-++++.+++ ..+.|+.++.+.+|.||+.+.-.+.+.. ...+
T Consensus 577 -------------n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~-ns~~ 642 (1227)
T COG5038 577 -------------NTGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRK-NSSI 642 (1227)
T ss_pred -------------CcceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCc-ceeE
Confidence 03466677777777755 233348899988 5667799999999999999999999988 8899
Q ss_pred EEEEEcCCCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEE-EEeccCCCCCCCccccCCC
Q 001521 395 EVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLAT-WVGTQADDSFPDAWKTDTA 473 (1061)
Q Consensus 395 ~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~-~~~~~~d~~~~~~~~~~~~ 473 (1061)
.+.++|.. ..+.||....+|.++..+ ....-.||++.++ +|+|.++. |.+...+..
T Consensus 643 ~~~~~d~~------~g~~i~~~~~~l~~li~~----t~dt~~~f~~~~~---kg~I~~t~~W~Pi~~~~~---------- 699 (1227)
T COG5038 643 KVVTFDVQ------SGKVIATEGSTLPDLIDR----TLDTFLVFPLRNP---KGRIFITNYWKPIYNAGG---------- 699 (1227)
T ss_pred EEEecccc------cCceeccccccchHhhhc----cccceEEEEcCCC---cceEEEEeccceeecccc----------
Confidence 99998873 367899999999988875 4445689999854 48888876 443332221
Q ss_pred CCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCC
Q 001521 474 GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTD 552 (1061)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~ 552 (1061)
..+..++...++.++|.|..|.+|... ..++++|||+++.+++ .++||-... .+.||.|++..+..+..+..
T Consensus 700 ----~~s~~~~~~pIg~irv~v~~andl~n~-i~g~~~dPya~v~~n~~~k~rti~~~-~~~npiw~~i~Yv~v~sk~~- 772 (1227)
T COG5038 700 ----SSSKTVYDTPIGAIRVSVRKANDLRNE-IPGGKSDPYATVLVNNLVKYRTIYGS-STLNPIWNEILYVPVTSKNQ- 772 (1227)
T ss_pred ----ccceeeecCccceEEEEeehhhccccc-ccCcccccceEEEecceeEEEEeccc-CccccceeeeEEEEecCCcc-
Confidence 122333455677799999999999987 8899999999999975 667777666 89999999999888876654
Q ss_pred eEEEEEEeccC-CCCceeEEEEEecccccccccccc--------------c------------cceEEE------cccCC
Q 001521 553 QLSFTLENRQH-KGSVALGVTRVPLTAVERRVDDRK--------------V------------ASRWFT------FENTN 599 (1061)
Q Consensus 553 ~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~--------------~------------~~~w~~------L~~~~ 599 (1061)
.+.+.++|... +.|..+|.+.++++++..+.++.. . ..+.|+ ++...
T Consensus 773 r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~ 852 (1227)
T COG5038 773 RLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVR 852 (1227)
T ss_pred EEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhc
Confidence 69999999988 999999999999999876322110 0 000011 10000
Q ss_pred ---------------------------Ccc----------------------------CCccceEE--------------
Q 001521 600 ---------------------------DEK----------------------------RAYKGRVH-------------- 610 (1061)
Q Consensus 600 ---------------------------~~~----------------------------~~~~G~i~-------------- 610 (1061)
+++ ....|.+.
T Consensus 853 ~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~ 932 (1227)
T COG5038 853 YVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQY 932 (1227)
T ss_pred chhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceE
Confidence 000 00112222
Q ss_pred EEEEeeC-CcccccCcc-------------------------------------cccCCC------------chh-----
Q 001521 611 LRLCFDG-GYHVMDEAA-------------------------------------HVCSDY------------RPT----- 635 (1061)
Q Consensus 611 l~i~l~~-~~~~~~~~~-------------------------------------~~~~d~------------~~~----- 635 (1061)
+.+.++. +|+..-.+. ..+.+. .|.
T Consensus 933 l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~ 1012 (1227)
T COG5038 933 LQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFP 1012 (1227)
T ss_pred EEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecC
Confidence 2222222 111100000 000000 000
Q ss_pred --hh------------cc----CCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccc
Q 001521 636 --AR------------QL----WKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWN 696 (1061)
Q Consensus 636 --~~------------~~----~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wn 696 (1061)
++ ++ .-.+.|.|.|.+.+|.||++ .|.+|.+||||++.++++. ++|+++++|+||+||
T Consensus 1013 g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwN 1089 (1227)
T COG5038 1013 GSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWN 1089 (1227)
T ss_pred CCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcc---cccCCCCCceEEEEecceecccccchhccCCCCcc
Confidence 00 00 01557999999999999987 4999999999999999985 599999999999999
Q ss_pred cEEEEEEe-cCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 697 EQYTWKVY-DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 697 e~~~~~v~-~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
|.+..+|. +....++|.|+|||... +++.||.+.|+|+.++.+..+....+|..+. .+. ..|.++.
T Consensus 1090 Ee~~i~v~~r~~D~~~i~v~Dwd~~~-----------knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~~-~~g~~~~ 1156 (1227)
T COG5038 1090 EEFTIEVLNRVKDVLTINVNDWDSGE-----------KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FIV-LDGTLHP 1156 (1227)
T ss_pred ccceEeeeccccceEEEEEeecccCC-----------CccccccccccHhhcCcCCccceeeeccCcc-eEe-cccEeec
Confidence 99999998 55589999999999765 6889999999999999999888888886554 222 2378888
Q ss_pred EEEEEec
Q 001521 776 AVRFIRT 782 (1061)
Q Consensus 776 ~~~f~~~ 782 (1061)
.+.|...
T Consensus 1157 ~~~~r~~ 1163 (1227)
T COG5038 1157 GFNFRSK 1163 (1227)
T ss_pred ceecchh
Confidence 7777543
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-25 Score=261.05 Aligned_cols=393 Identities=17% Similarity=0.177 Sum_probs=294.2
Q ss_pred ccEEEEEEEEeecCCC-------CCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCC
Q 001521 334 MHYLFVRVVKARFLPT-------KGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGD 405 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-------~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~ 405 (1061)
.|+|+|+|.+|++|.. ..|||+.+.+.+ ...+|++++++.||+|||+|+..+... .++|.|+|||.+.
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~-- 510 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNS-- 510 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccc--
Confidence 7899999999999975 889999999877 567999999999999999999999988 7999999999766
Q ss_pred CCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEEEEeccCCCCC-CCccccCCCCCccccccccc
Q 001521 406 VAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSF-PDAWKTDTAGNVNSKAKVYV 484 (1061)
Q Consensus 406 ~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~ 484 (1061)
+..|+.+|+..++|..+..+ ....++-+.+.......|++...+.+.+...... ..... ....
T Consensus 511 -~~sd~vvG~~~l~L~~L~~~----~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~-----------e~~e 574 (1227)
T COG5038 511 -FKSDKVVGSTQLDLALLHQN----PVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSV-----------EPLE 574 (1227)
T ss_pred -cCCcceeeeEEechHHhhhc----cccccceeeeeccCccceEEEEeeeeecccCCcccccccc-----------CCcc
Confidence 68999999999999999885 4444445555555556699888765543332111 00000 0001
Q ss_pred CCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC
Q 001521 485 SPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH 563 (1061)
Q Consensus 485 ~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~ 563 (1061)
....+.+.+++.++++|... ......-++++++.. +++-|++.+ .+.+|.||+++...+..-....+.+.++|..
T Consensus 575 d~n~GI~k~tl~~~~~l~~~--~~~~~~~~a~l~~~~keV~st~~~k-~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~- 650 (1227)
T COG5038 575 DSNTGILKVTLREVKALDEL--SSKKDNKSAELYTNAKEVYSTGKLK-FTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQ- 650 (1227)
T ss_pred cCCcceeEEEeeccccccCc--cccccceeEEEEecceEEeccceee-eccCCceeeecceEeccCcceeEEEEecccc-
Confidence 12235699999999999754 233334448888875 555557777 8999999999999888777888999998864
Q ss_pred CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCC
Q 001521 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPP 643 (1061)
Q Consensus 564 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 643 (1061)
..+.+|....+|.++... ......||++.. ..|+|.++.+|...|..-+. .++.....+
T Consensus 651 -~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~-------~kg~I~~t~~W~Pi~~~~~~----------~s~~~~~~p 709 (1227)
T COG5038 651 -SGKVIATEGSTLPDLIDR---TLDTFLVFPLRN-------PKGRIFITNYWKPIYNAGGS----------SSKTVYDTP 709 (1227)
T ss_pred -cCceeccccccchHhhhc---cccceEEEEcCC-------CcceEEEEeccceeeccccc----------cceeeecCc
Confidence 567888888888887743 245678999986 57999999887755431111 111223467
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
+|.++|.|..|.+|.. ....|++|||+.+..++.. .||-....++||.||+....++.++.+.|.+.++|....+
T Consensus 710 Ig~irv~v~~andl~n---~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r~~l~~~~~~~sg- 785 (1227)
T COG5038 710 IGAIRVSVRKANDLRN---EIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMDYEESG- 785 (1227)
T ss_pred cceEEEEeehhhcccc---cccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccEEeeeeecchhcc-
Confidence 9999999999999975 3678899999999988854 5999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccC---CcEEeeEEe---cee-cCCCCCccccEEEEEEEEEecCCc
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLET---GKVYRNTYP---LLL-LGSNGMTKMGEIEVAVRFIRTSPT 785 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~---L~~-~~~~~~~~~G~i~l~~~f~~~~~~ 785 (1061)
+|.+||.+.|+++++.. +..+..... ... ....|.+..|+|++..+|-+....
T Consensus 786 ----------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~ 845 (1227)
T COG5038 786 ----------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIV 845 (1227)
T ss_pred ----------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeeccc
Confidence 69999999999999865 111111111 111 111233345899998888655333
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-23 Score=238.45 Aligned_cols=213 Identities=22% Similarity=0.296 Sum_probs=176.2
Q ss_pred EEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---CeeeeeeeeecCCCCCcccceeEEeeccC--CCCeEEEEEEeccC
Q 001521 489 WYLRATVIEAQDILPPVAALKEASFTIKAQLG---FQVQKTKVSVTRNGTPSWNEDLLFVAAEP--FTDQLSFTLENRQH 563 (1061)
Q Consensus 489 ~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~~~~kT~~~~~~t~nP~wne~f~f~v~~~--~~~~L~i~V~D~d~ 563 (1061)
..|.|+|++|++|+.+ |..|.+||||++++. ..+.+|++.+ +++||.|||+|.|.+... ....|.+.|||.|.
T Consensus 167 ~~L~V~V~qa~~Lp~~-d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAK-DRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CEEEEEEEEecCCCcc-cCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 3499999999999999 877889999999996 3678899998 999999999999996543 24589999999999
Q ss_pred -CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCC
Q 001521 564 -KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKP 642 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~ 642 (1061)
+++++||.+.++|..+.... ....|.+|...........|+|.++++.. +
T Consensus 245 fsr~~~iGev~~~l~~~~~~~----~~~~w~~l~~~~~~~~~~~gel~~sL~Y~-------------------------p 295 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLS----TTLFWKDLQPSSTDSEELAGELLLSLCYL-------------------------P 295 (421)
T ss_pred cccccEEEEEEecCccccccc----cceeeeccccccCCcccccceEEEEEEee-------------------------c
Confidence 99999999999999886431 25679999875333333348999988753 2
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe--CCeE---EEecccCCCCCCccccEEEEEEec--CC-cEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY--ASKW---IRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~--~~~~---~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~v 714 (1061)
..|+|+|.|++|++|..+ |..+.+||||.+.+ +.+. .+|.++++++||+|||.|.|.|.. .. ..|.|+|
T Consensus 296 ~~g~ltv~v~kar~L~~~---~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V 372 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSM---DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTV 372 (421)
T ss_pred CCCeEEEEEEEecCCCcc---cCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEE
Confidence 358999999999999886 88899999999883 3333 389999999999999999998873 22 6799999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEccc
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRIST 746 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~ 746 (1061)
||++.++ ..++||++.+....
T Consensus 373 ~d~d~~~-----------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLG-----------SNDLIGRCILGSDS 393 (421)
T ss_pred EEccccc-----------ccceeeEEEecCCC
Confidence 9999987 46699999888765
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=233.56 Aligned_cols=211 Identities=21% Similarity=0.273 Sum_probs=173.0
Q ss_pred cccccccEEEEEEEEeecCCC-----CCCcEEEEEECC---eeeeeccccCCCCceeeeEEEEecc--CCCCCCeEEEEE
Q 001521 329 DLVEKMHYLFVRVVKARFLPT-----KGSPVVKIAVAN---SRVESKPARRTSCFEWDQTFAFGRD--SPESSSFLEVSV 398 (1061)
Q Consensus 329 dl~~~~~~L~V~v~~a~~L~~-----~~dPyv~v~~~~---~~~kT~~~~~t~nP~Wne~f~f~v~--~~~~~~~L~i~V 398 (1061)
++..+...|.|+|++|+||+. .+||||++.+.. .+++|++.++|+||+|||+|.|.+. .+. ...|.+.|
T Consensus 161 ~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~-~~~L~l~V 239 (421)
T KOG1028|consen 161 QYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELS-NRVLHLSV 239 (421)
T ss_pred EecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhc-cCEEEEEE
Confidence 334457789999999999986 589999999976 5789999999999999999999953 345 89999999
Q ss_pred EcCCCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC----CccccceEEEEEEeccCCCCCCCccccCCCC
Q 001521 399 WDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG----GAYSGDLMLATWVGTQADDSFPDAWKTDTAG 474 (1061)
Q Consensus 399 ~d~d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~----~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~ 474 (1061)
||.|. |+++++||++.++|..+... .....|.+|... ....|+|.++..+-+.
T Consensus 240 ~~~dr---fsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~--------------- 296 (421)
T KOG1028|consen 240 YDFDR---FSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYLPT--------------- 296 (421)
T ss_pred EecCC---cccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEeecC---------------
Confidence 99999 99999999999999888773 225679998753 2223799987665322
Q ss_pred CcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC--C---eeeeeeeeecCCCCCcccceeEEeeccC
Q 001521 475 NVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG--F---QVQKTKVSVTRNGTPSWNEDLLFVAAEP 549 (1061)
Q Consensus 475 ~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~wne~f~f~v~~~ 549 (1061)
-+.|+|.|++|+||..+ +.++.+||||++.+- . .+.||.+.+ ++.||+|||+|.|.+...
T Consensus 297 -------------~g~ltv~v~kar~L~~~-~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~nesf~F~vp~~ 361 (421)
T KOG1028|consen 297 -------------AGRLTVVVIKARNLKSM-DVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNETFVFDVPPE 361 (421)
T ss_pred -------------CCeEEEEEEEecCCCcc-cCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccccEEEeCCHH
Confidence 23499999999999999 999999999999993 2 344555555 999999999999988644
Q ss_pred C--CCeEEEEEEeccC-CCCceeEEEEEeccc
Q 001521 550 F--TDQLSFTLENRQH-KGSVALGVTRVPLTA 578 (1061)
Q Consensus 550 ~--~~~L~i~V~D~d~-~~d~~lG~~~i~l~~ 578 (1061)
. +-.|.|+|||++. +.+++||.|.+....
T Consensus 362 ~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 362 QLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred HhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 4 3379999999999 888899999988765
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=230.53 Aligned_cols=274 Identities=16% Similarity=0.247 Sum_probs=213.7
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccCCCCce
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGSVA 568 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~~~d~~ 568 (1061)
.|+|.|.+|+||+.. +..|.+||||.|.++. .+.||.++. +++.|.|.|+|+|+++..+. .|.|-|||.|.++|+.
T Consensus 6 sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTFR-YLSFYVWDRDLKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCccee-eEEEEEeccccccccc
Confidence 389999999999999 9999999999999975 788999999 99999999999999987665 6999999999899999
Q ss_pred eEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCCceEEE
Q 001521 569 LGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVE 648 (1061)
Q Consensus 569 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~ 648 (1061)
||.+.|.-.+|.... ..+.||.|..- +.+.+.+|+|++++.+..... . ..+.
T Consensus 83 IGKvai~re~l~~~~----~~d~W~~L~~V-D~dsEVQG~v~l~l~~~e~~~---~--------------------~~~~ 134 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYP----GKDTWFSLQPV-DPDSEVQGKVHLELALTEAIQ---S--------------------SGLV 134 (800)
T ss_pred cceeeeeHHHHhhCC----CCccceecccc-CCChhhceeEEEEEEeccccC---C--------------------Ccch
Confidence 999999988887542 47889999874 456778999999998754321 0 0123
Q ss_pred EEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE----EecccCCCCCCccccEEEEEEecC----------------Cc
Q 001521 649 LGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI----RTRTVSDSLEPRWNEQYTWKVYDP----------------CT 708 (1061)
Q Consensus 649 v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~----rT~~~~~~~~P~wne~~~~~v~~~----------------~~ 708 (1061)
..++.++++.|. .+|.+||||.+...+.+. +|.++++|.+|.|||.|.|.+... -.
T Consensus 135 c~~L~~r~~~P~----~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 135 CHVLKTRQGLPI----INGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred hhhhhhcccCce----eCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 345556677663 355699999999665544 999999999999999999998743 25
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCC----ccccEEEEEEEEEecCC
Q 001521 709 VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGM----TKMGEIEVAVRFIRTSP 784 (1061)
Q Consensus 709 ~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~----~~~G~i~l~~~f~~~~~ 784 (1061)
.|.+++||+..... .++|+|++++++..+........||-|..+.++.. ...|.+++.++|+.+..
T Consensus 211 ~irv~lW~~~~~~~----------~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V 280 (800)
T KOG2059|consen 211 EIRVDLWNDLNLVI----------NDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV 280 (800)
T ss_pred eEEEeeccchhhhh----------hhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence 78999999554431 48899999999999876566689999987744221 12489999999999987
Q ss_pred chhhhhhcCCCCCCCccccCCccH
Q 001521 785 TLDFLHVYSQPLLPLMHHIKPLGM 808 (1061)
Q Consensus 785 ~~~~~~~~~~p~~p~~~~~~p~~~ 808 (1061)
++.-.+.-+..++-.....+|++.
T Consensus 281 lps~~Y~pL~~LLl~s~d~~p~ta 304 (800)
T KOG2059|consen 281 LPSQYYKPLMDLLLESVDVQPITA 304 (800)
T ss_pred ccHhhhhhHHHHHHhcccccccch
Confidence 744444333334444455666664
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=192.83 Aligned_cols=144 Identities=55% Similarity=0.950 Sum_probs=126.3
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCCce
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGSVA 568 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d~~ 568 (1061)
+|+|+|++|+||+.+ |.+|.+||||++.++++..+|++..+++.||.|||.|.|.+.++..+.|.|.|+|++. +++++
T Consensus 1 ~L~V~Vi~A~~L~~~-d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPS-DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCC-CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCe
Confidence 389999999999999 9999999999999999999999887347999999999999987777799999999988 78999
Q ss_pred eEEEEEeccccccccccccccceEEEcccCCC-----ccCCccceEEEEEEeeCCcccccCcccccCCCch
Q 001521 569 LGVTRVPLTAVERRVDDRKVASRWFTFENTND-----EKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRP 634 (1061)
Q Consensus 569 lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~-----~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~ 634 (1061)
||++.++|+++....+......+||+|++..+ +..+.+|+|+|++++.++|++++++.+|++|++|
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 99999999998754333345789999998643 3456789999999999999999999999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-21 Score=180.52 Aligned_cols=124 Identities=56% Similarity=1.022 Sum_probs=106.9
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENG 726 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~ 726 (1061)
|+|+|++|+||..+..+|..|++||||++++|+++.||+++++++||+|||.|.|.+.++...|+|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~----- 76 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH----- 76 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-----
Confidence 899999999943333458999999999999999999999999999999999999999988889999999998762
Q ss_pred CCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 727 SMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 727 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
.+....+|++||++.|+|+.+..+..+..||+|.....++.++.|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 0000125899999999999999999899999999887777777799986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=177.28 Aligned_cols=120 Identities=23% Similarity=0.331 Sum_probs=102.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCC-CCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVR-DLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|+|++|++|+..+ .|++||||++.+++++++|+++.+ ++||+|||+|.|.+.... ..|.|+|||+|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~~- 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERAF- 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCCC-
Confidence 379999999999987777 799999999999999999999866 799999999999997643 6799999999999
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.+++...+..+...+.||+|.+.. .....|+|+|+++|
T Consensus 75 --~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~-~~~~~g~i~l~l~y 121 (121)
T cd04016 75 --TMDERIAWTHITIPESVFNGETLDDWYSLSGKQ-GEDKEGMINLVFSY 121 (121)
T ss_pred --cCCceEEEEEEECchhccCCCCccccEeCcCcc-CCCCceEEEEEEeC
Confidence 679999999999974344555568899998744 23467999999986
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.4e-20 Score=214.36 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=81.6
Q ss_pred CceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeee--eeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC
Q 001521 486 PKLWYLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQ--KTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH 563 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~--kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~ 563 (1061)
|....++|.|++|-+|.+. |.+|.+||||++.+|++.. +...+. +|+||+|++.|++.+..+.+..+.++|||+|.
T Consensus 610 pi~~LvrVyvv~A~~L~p~-D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPS-DGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred cceeeEEEEEEEeeecccc-CCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccchhhcceeEEEEeec
Confidence 3444599999999999999 9999999999999998764 455666 99999999999999999999999999999999
Q ss_pred -CCCceeEEEEEeccc
Q 001521 564 -KGSVALGVTRVPLTA 578 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~ 578 (1061)
+.|+.+|...++|..
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 889999999999876
|
|
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.3e-21 Score=215.88 Aligned_cols=238 Identities=21% Similarity=0.333 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhHHHhhcc---CCCCccchHHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchhhH
Q 001521 813 MLRSGAVKIIAAHLARSEPPLRRETVLCMLD---ADSHAFSMRKVRANWFRI-INVLAGVIDILRWADDTRSWKNPTATI 888 (1061)
Q Consensus 813 ~lr~~~~~~~~~~l~~~epp~~~~vv~~~ld---~~~~~fs~~~~~~N~~Rl-~~~~~~~~~~~~~i~~l~~W~~P~~T~ 888 (1061)
-+|||+++|+..+- -.+||.. -+| ++...||..++++|++|| ..++..+..+.+++.++++|++|+||.
T Consensus 56 liRRFnkqi~~vk~-~~~~p~~------~lDLn~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~ 128 (642)
T PF11696_consen 56 LIRRFNKQIYHVKA-IPDPPPG------GLDLNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTA 128 (642)
T ss_pred HHHHhhceeEEeec-CCCCCcc------cccccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHH
Confidence 38999999999984 4466665 234 788999999999999999 558889999999999999999999999
Q ss_pred HHHHHHHHHHHcChhhHHHHHHHHHHHHh----hcccccCCCCCCCCCCC------------------------------
Q 001521 889 LVHALLVMLVWFPDLIVPTLAFYVFVIGV----WNYRFRKRDPLPHFDPK------------------------------ 934 (1061)
Q Consensus 889 ~~~~~~~~~~~~p~l~~p~~~~~l~~~~~----~~~~~~~~~~~~~~~~~------------------------------ 934 (1061)
+||++|++ +|+.++++|+++..++++++ +.++|+|.+++ .++..
T Consensus 129 ~fc~vYf~-aW~~dll~p~~~~~L~~li~~P~~r~~lFPpap~a-lvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAv 206 (642)
T PF11696_consen 129 AFCAVYFI-AWLLDLLVPAFFAFLIALILSPPARSILFPPAPPA-LVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAV 206 (642)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccCCCCCcc-cccCCCCCccccccccccccccccCCCccccchHH
Confidence 99999998 99999999999998888887 45777776654 33211
Q ss_pred ---------------cccccccCCCcccccccCCCCCCChHHHH------------------------HHHHHHHHHHHH
Q 001521 935 ---------------ISLADTIERDELDEEFDTVPSARPNEIVR------------------------ARYDKLRTLGAR 975 (1061)
Q Consensus 935 ---------------~s~~~~~~~~~~~ee~~~~~~~~~~~~~~------------------------~~~~~l~~~~~~ 975 (1061)
++.+.+.+++...++.....+.+.+..+. -....+-..+..
T Consensus 207 EqEAsNfV~siasvav~saaGK~~q~~p~~~~~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p 286 (642)
T PF11696_consen 207 EQEASNFVNSIASVAVSSAAGKHPQGDPDDDPEEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRP 286 (642)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccCCccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhh
Confidence 11122222222111110001111111111 112334445668
Q ss_pred HHHHHHHHHHHHHHHHhcccCCChh--------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccC-------
Q 001521 976 VQTLLGDFAAQGERVQALVTWRDPR--------ATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRD------- 1040 (1061)
Q Consensus 976 vQ~~l~~va~~~E~~~nl~~w~~P~--------~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~------- 1040 (1061)
+|++|++++|.+|||-|+|+.+.|| +..+++.+++++.++..++-.|.+.|++|+.+|+.|.+++
T Consensus 287 ~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~RlRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr 366 (642)
T PF11696_consen 287 IMHMLGDITDTWERFANALSPTPPFPRHTPRLRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNR 366 (642)
T ss_pred HHHHHhhHHHHHHHHhhccCCCCCCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhc
Confidence 9999999999999999999999998 5567777888888888889999999999999999997554
Q ss_pred CCCChhh------HHhhcCCCCccC
Q 001521 1041 RMPSPAL------NFFRRLPSLSDR 1059 (1061)
Q Consensus 1041 ~~p~~~~------~~~~r~Ps~~~~ 1059 (1061)
.+|+.-. .+|+.||+++.+
T Consensus 367 ~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 367 KYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred cCCCHHHHHHHHHHHhccCCchHHH
Confidence 3444322 346778887654
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=212.07 Aligned_cols=126 Identities=17% Similarity=0.304 Sum_probs=112.5
Q ss_pred CCCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 1 ~~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
|.-..-|.|+|.+|+||++.+..|++||||.|.+++ ...||.++.++|.|.|.|+|+|.+...- +.|.|.|||.|
T Consensus 1 ~~~~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d 76 (800)
T KOG2059|consen 1 VRVEQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD 76 (800)
T ss_pred CccccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc
Confidence 444567999999999999999999999999999988 6899999999999999999999998763 78999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
+ ++|+.||.+.+.-++|...+ ..+.||.|.+....+.++|+|++++.+.+.
T Consensus 77 -~---~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~ 127 (800)
T KOG2059|consen 77 -L---KRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEA 127 (800)
T ss_pred -c---ccccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccc
Confidence 7 79999999999988875544 456799999998899999999999998763
|
|
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-20 Score=177.97 Aligned_cols=127 Identities=49% Similarity=0.916 Sum_probs=110.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|++|.+.+..|.+||||++.+++++++|+++++++||.|||+|.|.+.......+..|.|+|||++.++ +
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~--~ 78 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG--R 78 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc--C
Confidence 48999999999999998899999999999999999999999999999999999998653222468999999999882 1
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
+++|||++.+++.++...+....+||+|.+++..+..+|+|+|++.+.+
T Consensus 79 ~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 79 RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 6899999999999987555667789999987766778999999998753
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=172.09 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=103.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
.|.|+|+|++|++|+.. + .|++||||++.+|++++||+++.+ +.||+|||.|.|.+.+....|.|+|||++.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 48999999999988643 4 689999999999999999999976 79999999999999876678999999999986
Q ss_pred CCCCCCCCCCCCcceEEEEEEcc-cccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRIS-TLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.|++. .+..++..+.||+|.... +..+.|.|+|.++|
T Consensus 76 ----------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred ----------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 5899999999996 677888789999997643 33355999999876
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.6e-20 Score=175.48 Aligned_cols=115 Identities=30% Similarity=0.430 Sum_probs=100.9
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
.+|.|+|.|++|.||.. +|..++|||||++.+|+++.||+++++++||+|||.|+|.+.|++.+|+++|||+|.+.
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 47999999999999976 58889999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
.||+||++.|+|..+.... ..+| |....+.|... |.|.+
T Consensus 80 ----------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~ 118 (168)
T KOG1030|consen 80 ----------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLL 118 (168)
T ss_pred ----------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEe
Confidence 5999999999999998776 4556 65555555444 65554
|
|
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=174.10 Aligned_cols=122 Identities=25% Similarity=0.412 Sum_probs=103.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCC--CCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP--QVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~--~~~~~~L~v~v~d~d~~~~~ 84 (1061)
++|+|++|+||..++..|.+||||++.+++++++|+++++++||+|||+|.|.+.... ......|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~--- 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL--- 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc---
Confidence 5899999999999999999999999999999999999999999999999999997730 01157899999999998
Q ss_pred CCCceeEEEEEECcccee-cCceeeEEEeccccC-CCCeeeeEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVK-KGEEALIYYPLEKKS-LLSWIQGEVGLKIY 131 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~l~l~~~ 131 (1061)
++|++||++.+++.++.. .+.....||+|.++. ...+..|+|+++++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 679999999999999763 344466899998643 33457899999874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=166.03 Aligned_cols=118 Identities=56% Similarity=1.008 Sum_probs=105.7
Q ss_pred EEEEEEEEeecCCC-CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCeeE
Q 001521 336 YLFVRVVKARFLPT-KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLG 414 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~lG 414 (1061)
+|.|+|++|+||+. .+||||++.+++...+|++++++.||+|||+|.|.+.++. ...|.|.|||+|. + ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~-~~~L~~~v~d~d~---~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ-GSTLEVSVWDKDK---A-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcccCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc-CCEEEEEEEeCCC---C-cCceee
Confidence 58999999999987 8999999999999999999999999999999999998876 8899999999987 3 899999
Q ss_pred EEEEECcccCCCCCCCCCCCCeeEEccCCC--ccccceEEEEEEec
Q 001521 415 GICFDVTEIPLRDPPDSPLAPQWYRMEGGG--AYSGDLMLATWVGT 458 (1061)
Q Consensus 415 ~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~--~~~G~i~l~~~~~~ 458 (1061)
.+.++|.++..+.+.+....++||+|++.. ..+|+|++++|+|+
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999999876554556678999998764 57899999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=170.86 Aligned_cols=137 Identities=23% Similarity=0.325 Sum_probs=111.7
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecCC-cEEEEEEEeCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDPC-TVLALGVFDSWGIFEG 723 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~~~ 723 (1061)
.|+|+|++|++|+++ |..|.+||||++.++++..+|+++.+ ++||.|||.|.|.+.++. ..|.|.|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 388999999999885 88899999999999999999999977 699999999999998765 68999999998765
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCC----cEEeeEEeceecCC-----CCCccccEEEEEEEEEecCCchhhhhhcCC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETG----KVYRNTYPLLLLGS-----NGMTKMGEIEVAVRFIRTSPTLDFLHVYSQ 794 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~~~~~~G~i~l~~~f~~~~~~~~~~~~~~~ 794 (1061)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|++.|...+.+......|.+
T Consensus 76 ---------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~ 146 (150)
T cd04019 76 ---------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSS 146 (150)
T ss_pred ---------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeeccccccc
Confidence 588999999999998643 34579999986532 223345999999999977666444444544
Q ss_pred CC
Q 001521 795 PL 796 (1061)
Q Consensus 795 p~ 796 (1061)
.+
T Consensus 147 ~~ 148 (150)
T cd04019 147 DL 148 (150)
T ss_pred CC
Confidence 44
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=168.11 Aligned_cols=117 Identities=24% Similarity=0.342 Sum_probs=101.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec------CCcEEEEEEEeCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD------PCTVLALGVFDSWGI 720 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~------~~~~l~i~v~d~~~~ 720 (1061)
++|+|++|+||+++ |..|.+||||++++++...||+++++++||+|||.|.|.+.+ ....|.|.|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999874 788999999999999999999999999999999999999986 358899999999987
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEccccc--CCcEEeeEEeceecCCCCCccccEEEEEE
Q 001521 721 FEGENGSMETTRPDCRIGKVRIRISTLE--TGKVYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 5889999999999987 56666899999865433333459999886
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=163.84 Aligned_cols=118 Identities=25% Similarity=0.385 Sum_probs=98.9
Q ss_pred EEEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARN---LLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~---L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|++|++ |..+|..|++||||++.++++++||+++++++||+|||+|.|.+.+.. ..|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 889999999999999999999999999999999999999999998754 58999999998861
Q ss_pred ---CCCCCceeEEEEEECccceecCceeeEEEeccccC-CCCeeeeEEEE
Q 001521 83 ---PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS-LLSWIQGEVGL 128 (1061)
Q Consensus 83 ---~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~-~~~~~~G~l~l 128 (1061)
..++|++||++.+++..+.. +.....||+|.... ...+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLED-DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccC-CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00269999999999999654 44567899998643 23446788875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=167.00 Aligned_cols=116 Identities=28% Similarity=0.509 Sum_probs=98.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
.|.|+|+|++|.||..+|..+++||||++.+++++.+|+++.+++||+|||.|.|.+.++. ..|.+.|||+|++
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTF-- 78 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCC--
Confidence 5899999999999999998899999999999999999999999999999999999999985 7899999999999
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
++|||||.++|+|..++..... |+ |....+.+...|++.++.
T Consensus 79 -s~dD~mG~A~I~l~p~~~~~~~---~~-l~~~~~~gt~~~~v~~s~ 120 (168)
T KOG1030|consen 79 -SSDDFMGEATIPLKPLLEAQKM---DY-LKLELLTGTAIGKVLLSR 120 (168)
T ss_pred -CcccccceeeeccHHHHHHhhh---hc-cccccCCCcEeeEEEecc
Confidence 7899999999999997665432 34 433333344456555544
|
|
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=164.90 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=103.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
+.|.|+|+|++|++|.+.+..|.+||||++.++++.++|+++++++||.|||+|.|.+.+.. ...|.|+|||++.+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~~- 88 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDFF- 88 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCCC-
Confidence 56999999999999999999999999999999999999999999999999999999998755 47899999999988
Q ss_pred CCCCCceeEEEEEECccceecC----ceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKG----EEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.+++.++.... ....+|++|..+ .+|+|++++++
T Consensus 89 --~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-----~~g~i~l~~~~ 135 (136)
T cd08375 89 --SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEV-----PTGEVVVKLDL 135 (136)
T ss_pred --CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccc-----cceeEEEEEEe
Confidence 67999999999999987621 122356766543 48999999986
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=161.71 Aligned_cols=120 Identities=24% Similarity=0.394 Sum_probs=104.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~--- 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRG--- 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCC---
Confidence 4899999999999999999999999999987 688999999999999999999998754 37899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
++|++||++.+++.++.. +.....|++|.+++. ....|+|++.+++.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 LTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred CCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 679999999999999754 444668999987543 356899999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=161.56 Aligned_cols=119 Identities=26% Similarity=0.355 Sum_probs=105.0
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
.|+|+|++|++|++. |..|.+||||++++++ ...+|+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAAR---DRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCc---CCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 378999999999875 7789999999999988 456999999999999999999999887899999999999876
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|++||++.++++++..+...+.|++|..... .+..|+|+|.++|+
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 --------TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLT 120 (121)
T ss_pred --------CCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEEC
Confidence 58899999999999998888889999975432 34569999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=162.95 Aligned_cols=117 Identities=29% Similarity=0.493 Sum_probs=102.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccC-CCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAV-RDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|+|+|++|+||+..+..|++||||++.+++.+++|+++. +++||.|||+|.|.+.... .+.|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 68999999999999999999999999999999999999885 5799999999999998754 47899999999987
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+ |++||++.+++.++...+ ...+|++|...+ ...|+|+++++|
T Consensus 76 -~-~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 -K-PDLIGDTEVDLSPALKEG-EFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred -C-CcceEEEEEecHHHhhcC-CCCCcEEeccCC---cEeeEEEEEEEC
Confidence 4 899999999999975543 356899998643 578999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-18 Score=161.14 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=101.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKD-GHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|.+|+||++++ ..|.+||||.+.++++ .++|+++++|+||.|||+|.|.+.... ..|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~~--- 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVL--- 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCCC---
Confidence 789999999999874 4678999999999774 689999999999999999999998643 6899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++|++||++.++++++... ...+.||+|.+....++..|+|++++.+
T Consensus 75 ~~~~~iG~~~i~l~~l~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 RRDSVIGKVAIKKEDLHKY-YGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCCceEEEEEEEHHHccCC-CCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 6899999999999997653 3456899999876666679999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.8e-18 Score=163.73 Aligned_cols=122 Identities=26% Similarity=0.464 Sum_probs=106.2
Q ss_pred cEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
|+|+|+|++|+||...+. .+.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~- 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRF- 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCC-
Confidence 789999999999999988 899999999999999999999999999999999999998744 57899999999988
Q ss_pred CCCCCceeEEEEEECccceec--CceeeEEEeccccC--CCCeeeeEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLEKKS--LLSWIQGEVGLKIYY 132 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~ 132 (1061)
+++++||++.+++.++... ......||+|.++. ......|+|+|+++|
T Consensus 77 --~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 --AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred --CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5799999999999997642 23356899998753 234579999999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-18 Score=159.10 Aligned_cols=115 Identities=22% Similarity=0.466 Sum_probs=102.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
+|+|+|++|++|+..+..|.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++.. +
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~---~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTG---K 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCC---C
Confidence 58999999999999998899999999999999999999999999999999999998764 47899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+|++||++.+++.++.. +.....|++|.+. .|+|++.+.|.
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPR-EQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCC-CCceEEEEEccCC------CcEEEEEEEec
Confidence 79999999999999654 4456789999864 69999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.5e-18 Score=167.18 Aligned_cols=125 Identities=25% Similarity=0.348 Sum_probs=107.8
Q ss_pred ceEEEEEEEeecCCCCCccc---------------------------CCCCCCCcEEEEEeCCeEE-EecccCCCCCCcc
Q 001521 644 VGTVELGVIGCKNLLPMKTV---------------------------NGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRW 695 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~---------------------------d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~w 695 (1061)
-|.|.|+|++|++|+.|+.. ...|.+||||++.+++..+ ||++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 48999999999999998421 2567899999999998765 9999999999999
Q ss_pred ccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEE
Q 001521 696 NEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 696 ne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
||.|.|.+.++.+.|.|.|||++..+ +++||++.|+++++..+...+.||+|.....+..+..|.|++
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~------------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v 153 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG------------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRV 153 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC------------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEE
Confidence 99999999888889999999998765 679999999999999888888999998764444455589999
Q ss_pred EEEEE
Q 001521 776 AVRFI 780 (1061)
Q Consensus 776 ~~~f~ 780 (1061)
+++|+
T Consensus 154 ~~~f~ 158 (158)
T cd04015 154 SLQFT 158 (158)
T ss_pred EEEEC
Confidence 99984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-18 Score=163.24 Aligned_cols=121 Identities=30% Similarity=0.505 Sum_probs=104.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-------RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.|+|+|++|+||..++..|.+||||++.+++. .++|+++++++||.|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence 48999999999999998899999999999654 579999999999999999999987643 6799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCc-----eeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGE-----EALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+.+ +++++||++.+++.++..... ....||+|.++...+...|+|++++.|.
T Consensus 77 ~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRL---TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCC---CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 998 679999999999999765432 2458999998666677899999999873
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.9e-18 Score=159.57 Aligned_cols=115 Identities=25% Similarity=0.448 Sum_probs=100.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|+||+.+ .+||||++.+++++.+|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC----
Confidence 389999999999877 7999999999999999999999999999999999987654 57899999999986
Q ss_pred CCceeEEEEEECccceecC----ceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKG----EEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++++||++.+++.++...+ .....||+|..... ++.+|+|+|.+.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 5899999999999975532 22458999988654 6789999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=158.42 Aligned_cols=119 Identities=23% Similarity=0.340 Sum_probs=102.4
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|.|+|++|+||++++ +.+|.+||||.+.++++. .+|+++++|+||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 689999999998852 246789999999998764 5999999999999999999999876789999999999875
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.++++++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -------RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -------CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 58999999999999987777789999987654443 35999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=158.65 Aligned_cols=118 Identities=21% Similarity=0.393 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|.+++..|++||||++.+++. .++|+++++++||.|||.|.|.+... ...|.|+|||++.. +
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~---~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTL---S 74 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCC---C
Confidence 7899999999999999999999999999875 57999999999999999999998754 37899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIY 131 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 131 (1061)
+|++||++.++++++...+...+.|++|.+........|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 8999999999998875443445689999876555667899999875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=161.05 Aligned_cols=121 Identities=28% Similarity=0.459 Sum_probs=103.7
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCC----cEEEEEEEeCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPC----TVLALGVFDSWGIF 721 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~----~~l~i~v~d~~~~~ 721 (1061)
+|+|+|++|++|.+. |..|.+||||++.++++..||+++++++||.|||.|.|.+.++. ..|.|+|||++..+
T Consensus 1 ~L~V~vi~A~~L~~~---d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPK---DGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 489999999999874 77889999999999999999999999999999999999998543 57999999988764
Q ss_pred CCCCCCCCCCCCCcceEEEEEEccccc-CCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLE-TGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+ +|++||++.++++++. .+.....||+|......+. ..|+|+|++.||
T Consensus 78 ~----------~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~ 126 (127)
T cd04022 78 R----------RRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSR-VRGEIGLKVYIT 126 (127)
T ss_pred C----------CCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCC-ccEEEEEEEEEc
Confidence 1 4889999999999997 4666689999987644333 359999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=157.10 Aligned_cols=118 Identities=27% Similarity=0.517 Sum_probs=104.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|.|+|++|+||+..+..+.+||||++.+++..++|+++++++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~--- 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKD--- 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCC---
Confidence 68999999999999999899999999999999889999999999999999999998753 37899999999987
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+++++||++.+++.++.. + ...|++|.+........|+|.+++.+
T Consensus 74 ~~~~~iG~~~~~l~~~~~-~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKN-G--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCceeeEEEEEHHHCCC-C--CceEEECcccCCCCceeeEEEEEEEe
Confidence 579999999999999643 2 24699998876666789999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=158.33 Aligned_cols=120 Identities=19% Similarity=0.419 Sum_probs=102.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|++|+||+. ..|.+||||++.+++ ++++|+++++++||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~--- 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKK--- 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCC---
Confidence 6799999999987 678999999999974 678999999999999999999999653 37899999999998
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCC-CCeeeeEEEEEEEEEeCC
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL-LSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~~ 136 (1061)
++|+|||++.+++.++.... ....||+|.++.. .....|+|++++.|.+..
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNP-SGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCC-ceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 67999999999999976543 3467999987543 345799999999998754
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=156.59 Aligned_cols=107 Identities=19% Similarity=0.323 Sum_probs=90.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----C--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----G--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.|+|+|++|+||+..+ .|.+||||+|++- . ++++|+++.+++||+|||+|.|.+..........|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 5999999999983 2 467899999999999999999999864322246799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|.. ++|++||++.+++.++...+ ....|++|.+..
T Consensus 80 d~~---~~dd~IG~~~l~l~~~~~~~-~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFA---RDDRLVGVTVLQLRDIAQAG-SCACWLPLGRRI 114 (120)
T ss_pred ccc---CCCCEEEEEEEEHHHCcCCC-cEEEEEECcCcc
Confidence 977 67999999999999976554 467899998753
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-17 Score=156.57 Aligned_cols=121 Identities=20% Similarity=0.358 Sum_probs=102.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWGIF 721 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~~~ 721 (1061)
...|+|+|++|+||++ .+.+||||.+.+++.. .||++ ++++||.|||.|.|++..+. ..|+|.|||++..+
T Consensus 3 ~~~L~V~Vi~A~~L~~------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPV------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCC------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC
Confidence 4579999999999975 2478999999998865 58887 56899999999999976554 67999999998875
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
+|++||++.|+|+.+..+...+.||+|......+.+..|+|+|.++|.++
T Consensus 76 -----------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 76 -----------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -----------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 69999999999999999888899999987654344456999999999753
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=154.09 Aligned_cols=100 Identities=21% Similarity=0.304 Sum_probs=90.0
Q ss_pred ccEEEEEEEEeecCCC--CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCC
Q 001521 334 MHYLFVRVVKARFLPT--KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPG 411 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~--~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~ 411 (1061)
|+.|+|+|++|++|++ ..||||+|++|+++.+|++.++ .||.|||.|.|.+.+. ...|.|+|||+|. ..|+
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~----~~DD 73 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGL----IWDT 73 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCC----cCCC
Confidence 6789999999999987 6799999999999999999987 5999999999999887 4559999999986 5999
Q ss_pred eeEEEEEECcccCCCCCCCCCCCCeeEEccCC
Q 001521 412 FLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG 443 (1061)
Q Consensus 412 ~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 443 (1061)
+||++.|+|.++..+ +..+.++||+|+..
T Consensus 74 ~lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 74 LVGTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred ceEEEEEEhHHcccC---CCCCCCccEecChH
Confidence 999999999999986 56778999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-17 Score=157.40 Aligned_cols=119 Identities=26% Similarity=0.429 Sum_probs=101.1
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWG 719 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 719 (1061)
...+|.|+|+|++|++|.++ |..|.+||||++.+++...||+++++++||.|||.|.|.+.++. ..|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~---d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPC---NSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCC---CCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 35689999999999999875 78899999999999999999999999999999999999998754 789999999998
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccC-----CcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLET-----GKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
.+ +|++||++.+++.++.. ...+..|.++ .+. ..|+|+|++.|
T Consensus 88 ~~-----------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-----~~~-~~g~i~l~~~~ 135 (136)
T cd08375 88 FS-----------PDDFLGRTEIRVADILKETKESKGPITKRLLL-----HEV-PTGEVVVKLDL 135 (136)
T ss_pred CC-----------CCCeeEEEEEEHHHhccccccCCCcEEEEecc-----ccc-cceeEEEEEEe
Confidence 75 58899999999999976 2233445554 233 33999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-17 Score=155.38 Aligned_cols=118 Identities=24% Similarity=0.367 Sum_probs=103.9
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|+|+|++|+||+.+ |..+.+||||++++++...+|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999875 7788999999999999989999999999999999999999887889999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+|++||++.+++.++..+. ..||+|......+.. .|+|.|++.|
T Consensus 75 --------~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~G~i~l~~~~ 118 (119)
T cd08377 75 --------KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTRA-KGSILLEMDV 118 (119)
T ss_pred --------CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCce-eeEEEEEEEe
Confidence 5889999999999998776 689999765433333 4999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-17 Score=157.19 Aligned_cols=115 Identities=32% Similarity=0.577 Sum_probs=101.0
Q ss_pred cEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDG------HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~------~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
|+|+|+|++|+||+..+. .|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 689999999999998875 368999999999999999999999999999999999998654 57899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+.. ++++||++.+++.++...+ ....||+|.+. ..|+|+++++|
T Consensus 78 ~~~----~~~~iG~~~i~l~~l~~~~-~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD----KDDFLGRLSIDLGSVEKKG-FIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CCC----CCCcEEEEEEEHHHhcccC-ccceEEECcCC-----CCceEEEEEeC
Confidence 987 5899999999999976544 35689999865 38999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=155.03 Aligned_cols=120 Identities=22% Similarity=0.391 Sum_probs=99.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
..|+|+|++|+||+.+ +.+||||++.+++ +..+|++. +++||.|||+|.|.+.... ...|.|.|||++..
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~-- 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKR-- 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCC--
Confidence 5799999999999874 4799999999987 45788874 6899999999999876543 25799999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccCC-CCeeeeEEEEEEEEEeC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL-LSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~~~ 135 (1061)
++|++||++.+++.++.. +.....||+|.+... .....|+|+|+++|.+.
T Consensus 75 -~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 -SKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred -CCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 689999999999999654 444678999987643 34567999999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=156.65 Aligned_cols=116 Identities=23% Similarity=0.358 Sum_probs=99.8
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEec-CCcEEEEEEEeCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~ 722 (1061)
|.|+|+|++|++|++. |..|.+||||++.+++...+|+++++ ++||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~- 76 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK- 76 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-
Confidence 7899999999999874 77899999999999998889999865 7999999999999986 4578999999987653
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
|++||++.++++++..+.....||+|... + +..|+|+|++.|
T Consensus 77 -----------~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 77 -----------PDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -----------CcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 78999999999998766666899999742 3 345999999876
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=156.06 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=103.1
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|+|++|+||+. ..|.+||||++.+++ +..||+++++++||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5799999999964 568999999999974 567999999999999999999999766788999999999875
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+|++||++.++++++..+.....||+|......+.+..|+|++++.|..++
T Consensus 73 --------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 73 --------DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred --------CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 589999999999999887766889999865332334459999999998654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.3e-17 Score=154.93 Aligned_cols=121 Identities=23% Similarity=0.374 Sum_probs=104.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
..+|+|+|++|++|...+..|.+||||++.++++.++|+++++++||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999999899999999999999999999999999999999999988764 47899999999987
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEecccc--CCCCeeeeEEEEEEEEEeC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK--SLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~l~l~~~~~~~ 135 (1061)
+|++||++.+++.++. ....+|++|..+ ...+...|+|.+++++.+.
T Consensus 76 --~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 --CDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred --CCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 4899999999998742 233468888643 3566789999999988764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-17 Score=155.31 Aligned_cols=115 Identities=23% Similarity=0.426 Sum_probs=99.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|+..+..|++||||++.+++ .+++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~- 76 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV- 76 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC-
Confidence 3789999999999998889999999999953 6789999999999999999999998754 46799999999987
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYV 133 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 133 (1061)
+|++||++.+++.++. .+.....|++|.+.+ .|+|++++.+.
T Consensus 77 ---~~~~iG~~~~~l~~l~-~g~~~~~~~~L~~~~-----~g~l~~~~~~~ 118 (119)
T cd04036 77 ---MDDHLGTVLFDVSKLK-LGEKVRVTFSLNPQG-----KEELEVEFLLE 118 (119)
T ss_pred ---CCcccEEEEEEHHHCC-CCCcEEEEEECCCCC-----CceEEEEEEee
Confidence 4899999999999964 455567899998764 89999888763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-17 Score=156.77 Aligned_cols=105 Identities=26% Similarity=0.415 Sum_probs=89.2
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.+.|.|+|++|+||++++ .|.+||||++.+. ..+++|+++++++||.|||+|.|.+..........|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 478999999999999999 8999999999995 3578999999999999999999997332212257899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
+.+ +++++||++.++|.++.. ......||+|
T Consensus 91 d~~---~~~~~lG~~~i~l~~l~~-~~~~~~W~~L 121 (122)
T cd08381 91 DSL---VENEFLGGVCIPLKKLDL-SQETEKWYPL 121 (122)
T ss_pred CCC---cCCcEEEEEEEecccccc-CCCccceEEC
Confidence 998 689999999999999654 3345679987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=7e-17 Score=154.73 Aligned_cols=118 Identities=27% Similarity=0.476 Sum_probs=101.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
+|+|+|++|++|..++..+.+||||++.+++..++|+++++++||.|||+|.|.+.... ...|.|+|||++.+ +
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~---~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLV---S 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCC---C
Confidence 48999999999999998889999999999999999999999999999999999998764 47899999999998 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccC----CCCeeeeEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS----LLSWIQGEVGLKI 130 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~----~~~~~~G~l~l~~ 130 (1061)
++++||++.+++.++...+ ....||.|.+.. ......|.|++.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAK-QEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCcEeEEEEEEHHHcccCC-CCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 7999999999999975533 345799998733 2345679998876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.7e-17 Score=152.13 Aligned_cols=113 Identities=24% Similarity=0.379 Sum_probs=101.8
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~ 725 (1061)
|+|+|++|+||++. |..|.+||||.+++++...+|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 2 ~~V~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~---- 74 (116)
T cd08376 2 VTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK---- 74 (116)
T ss_pred EEEEEEEEECCCCC---CCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC----
Confidence 78999999999875 7788999999999999999999999999999999999999876 689999999999875
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|++||++.++|+++..+.....||+|... .|+|++++.|+
T Consensus 75 -------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 75 -------KDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred -------CCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 589999999999999988888999999632 39999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=152.16 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=102.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
.+.|+|+|++|++|... |..|.+||||++.++++..||++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-- 76 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-- 76 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC--
Confidence 46899999999999874 7889999999999999999999999999999999999999888899999999988753
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC--CCCCccccEEEEEEEEEe
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG--SNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~~~~~~G~i~l~~~f~~ 781 (1061)
|++||++.++++.+..+. .++|+|.... ..+ +..|+|.|++.+..
T Consensus 77 ----------d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~ 123 (126)
T cd04046 77 ----------DEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSSD 123 (126)
T ss_pred ----------CCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEcc
Confidence 789999999999875544 6788986432 233 33499999988753
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.5e-17 Score=153.75 Aligned_cols=119 Identities=24% Similarity=0.449 Sum_probs=101.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
.|+|+|++|++|..++..|.+||||++.++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++.++.
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~- 74 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKK- 74 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCC-
Confidence 389999999999999989999999999996 578999999999999999999999965 3789999999998831
Q ss_pred CCCceeEEEEEECccceecCceeeEEEeccccCC--CCeeeeEEEEEE
Q 001521 85 TRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL--LSWIQGEVGLKI 130 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 130 (1061)
..|+|||++.+++.++.........|++|.+.+. .+...|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1258999999999998766555567999977553 566789999876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.5e-17 Score=155.21 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=102.8
Q ss_pred eEEEEEEEeecCCCCCcccCC--CCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNG--KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIF 721 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~--~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 721 (1061)
|.|+|+|++|++|++. |. .|.+||||++++++...+|+++++++||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~ 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAK---DRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA 77 (128)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC
Confidence 7899999999999874 66 7899999999999999999999999999999999999997 5689999999999875
Q ss_pred CCCCCCCCCCCCCcceEEEEEEccccc---CCcEEeeEEeceecCC-CCCccccEEEEEEEE
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLE---TGKVYRNTYPLLLLGS-NGMTKMGEIEVAVRF 779 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~-~~~~~~G~i~l~~~f 779 (1061)
+|++||++.|++.++. .......||+|..... ......|+|+|++.|
T Consensus 78 -----------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 -----------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -----------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5889999999999986 2334578999986632 222345999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=153.83 Aligned_cols=118 Identities=30% Similarity=0.542 Sum_probs=101.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC--
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP-- 83 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~-- 83 (1061)
.|+|+|++|++|+..|..|.+||||++.+++..++|+++.+++||.|||+|.|.+.... ..|.|+|||+|....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCcccc
Confidence 68999999999999999999999999999988999999999999999999999986543 679999999985310
Q ss_pred ------CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEE
Q 001521 84 ------TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 84 ------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
.+++++||++.+++.++. ....+||.|.++...+..+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 025899999999999863 22458999999887788999999875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.6e-17 Score=158.98 Aligned_cols=107 Identities=21% Similarity=0.381 Sum_probs=89.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecC------------CCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGK------------PPQVFT 68 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~------------~~~~~~ 68 (1061)
.|.|+|++|+||.. ..|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+.. ......
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999987 568999999999965 67899999999999999999999951 111113
Q ss_pred CeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 69 DMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 69 ~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
..|.|.|||++.+ ++|+|||++.|++..+.........||+|.++.
T Consensus 79 ~~L~i~V~d~~~~---~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMG---GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCC---CCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 6799999999998 679999999999999765423456799998865
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=152.23 Aligned_cols=100 Identities=26% Similarity=0.362 Sum_probs=88.3
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEe---c-CCcEEEEEEE
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVY---D-PCTVLALGVF 715 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~---~-~~~~l~i~v~ 715 (1061)
|.|.|.|++|+||+++ | .|.+||||++++.+ .+.||+++++++||.|||.|.|++. + ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~---~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLL---D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCC---C-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 6899999999999985 7 78999999999763 3569999999999999999999983 2 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
|++..+ ++++||++.|+|+++..+.....||+|
T Consensus 89 d~d~~~-----------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----------CCcEEEEEEEeccccccCCCccceEEC
Confidence 999875 588999999999999988777899998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=158.34 Aligned_cols=121 Identities=21% Similarity=0.347 Sum_probs=101.2
Q ss_pred CcEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCe-EEEeeccCCCCCCee
Q 001521 4 IQKLIVEVVDARNLLPKD------------------------------GHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTW 52 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d------------------------------~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W 52 (1061)
.|+|.|+|.+|++|+.+| ..|++||||+|.+++. ..+|+++++++||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 489999999999999987 3577999999999884 469999999999999
Q ss_pred eceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCC-CeeeeEEEEEEE
Q 001521 53 NEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL-SWIQGEVGLKIY 131 (1061)
Q Consensus 53 ~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~ 131 (1061)
||+|.|.+... .+.|.|.|||+|.+ .+++||++.++++++.. +...+.|++|.+.... ....|+|+++++
T Consensus 86 nE~F~~~~~~~----~~~l~~~V~d~d~~----~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 86 NESFHIYCAHY----ASHVEFTVKDNDVV----GAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred ceEEEEEccCC----CCEEEEEEEeCCCc----CCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 99999998754 36899999999987 36899999999999764 5556789999874322 234689999998
Q ss_pred EE
Q 001521 132 YV 133 (1061)
Q Consensus 132 ~~ 133 (1061)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.3e-17 Score=149.76 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=85.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+...+. .+..|.|+|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l-~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEES-LDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHh-CCcEEEEEEEeC
Confidence 5689999999999998 3 46799999999942 57899999999999999999999887543 367899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++ +++++||++.+++.++ ..+.....|-.|
T Consensus 88 Drf---s~~d~IG~v~l~l~~~-~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRF---SRHSTLGELRLKLADV-SMMLGAAQWVDL 118 (118)
T ss_pred CCC---CCCceEEEEEEccccc-cCCccccchhcC
Confidence 999 7899999999999985 222233357543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=154.33 Aligned_cols=125 Identities=22% Similarity=0.389 Sum_probs=101.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCC----C--CCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ----V--FTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~----~--~~~~L~v~v~d~ 78 (1061)
..|+|+|++|++|..+|..|.+||||++.+++++++|+++++++||.|||+|.|.+..... . ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999997543210 0 025799999999
Q ss_pred CCCCCCCCCceeEEEEE-ECcccee--cCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 79 KAYGPTTRNNFLGRIRL-SSSQFVK--KGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|.. ++|++||++.+ ++..+.. ......+|++|.+.+ ...|+|++++++.+.
T Consensus 81 d~~---~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSV---GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred cCC---CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 998 67999999997 4433322 123456899998543 469999999999874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=150.38 Aligned_cols=117 Identities=24% Similarity=0.322 Sum_probs=99.9
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|.|+|++|++|.++ |..|.+||||+++++++. .||+++++++||.|||.|.|.+.+....|.|.|||++..+
T Consensus 2 l~v~vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAK---DITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCC---CCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 78999999999885 888999999999998875 4999999999999999999999877789999999999876
Q ss_pred CCCCCCCCCcceEEEEEEcccccCC-cEEeeEEeceecCCCCCccccEEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETG-KVYRNTYPLLLLGSNGMTKMGEIEVAVR 778 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 778 (1061)
+|++||++.+++.++..+ ...+.|++|......+. ..|+|.+.++
T Consensus 75 -------~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 -------RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred -------CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 589999999999988754 23578999986544333 3499988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=152.22 Aligned_cols=119 Identities=25% Similarity=0.381 Sum_probs=101.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~ 724 (1061)
+|+|+|++|++|.++ |..|.+||||.+++++...+|+++++++||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~---d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPK---DRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCC---CCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 489999999999875 7788999999999999999999999999999999999999865 478999999998876
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCC---CCccccEEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSN---GMTKMGEIEVAVR 778 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~i~l~~~ 778 (1061)
++++||++.++|+++..+.....||.|...... ..+..|.|++.++
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 --------KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred --------CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 588999999999999876666889999865332 1223499988764
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=154.07 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=100.5
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-------EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-------WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSW 718 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-------~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~ 718 (1061)
.|+|+|++|++|+.. |..|.+||||++.+++. ..+|+++++++||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 378999999999874 77889999999997654 46999999999999999999999876788999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCc------EEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGK------VYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
..+ +|++||++.++++++..+. ....||+|......+.. .|+|+|++.|
T Consensus 78 ~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~G~l~~~~~~ 132 (133)
T cd04033 78 RLT-----------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRV-KGHLRLYMAY 132 (133)
T ss_pred CCC-----------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcc-eeEEEEEEee
Confidence 876 5889999999999987653 23589999865444433 4999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=147.13 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
.|.|+|++|+||+..+..+.+||||+++++++.++|+++++++||+|||+|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC-----
Confidence 38999999999999998999999999999999999999999999999999999999865 4789999999874
Q ss_pred CCceeEEEEEECccceecC-ceeeEEEeccccC
Q 001521 86 RNNFLGRIRLSSSQFVKKG-EEALIYYPLEKKS 117 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~ 117 (1061)
+++||++.++|.++...+ ...+.||+|.+++
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred -CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 579999999999987654 4467899998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=151.69 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=88.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v 714 (1061)
.+.|.|+|++|+||+++ |.. |.+||||.+++.+ ...||+++++++||.|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAA---DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCc---CCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 46899999999999985 765 8999999999642 23599999999999999999999873 236899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 91 ~d~~~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG-----------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC-----------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9998875 6889999999999998877778999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=149.66 Aligned_cols=103 Identities=18% Similarity=0.273 Sum_probs=89.2
Q ss_pred ceEEEEEEEeecCCCCCcccCC-CCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNG-KSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~-~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v 714 (1061)
.|.|.|.|++|+||++. |. .|.+||||++++.+ ...||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 14 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 14 TQSLNVHVKECRNLAYG---DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCeEEEEEEEecCCCcc---CCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 57999999999999874 44 57899999999642 24599999999999999999999874 346899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ ++++||++.|+|.++......+.||||.
T Consensus 91 ~d~~~~~-----------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 91 WHYDRFG-----------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EECCCCC-----------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 9999876 5889999999999999888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=151.15 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=89.4
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEecCCcEEEEEEE-eCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVF-DSW 718 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~-d~~ 718 (1061)
|.|.|+|++|+||.+. .+..|.+||||++++.+ + +.||+++++++||+|||.|.|++......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~--~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQK--PGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcc--cCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 6899999999999874 13578899999999633 2 56999999999999999999999966689999999 566
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
... ++++||++.|+|+++..+.....||+|...
T Consensus 107 ~~~-----------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD-----------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC-----------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 543 588999999999999877777899999754
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=151.53 Aligned_cols=121 Identities=22% Similarity=0.333 Sum_probs=100.9
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 4 IQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYYG--QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~--~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
.|.|+|+|++|+||+..+ ..+.+||||++.+++ ..++|+++.+++||.|||.|.|.+... .+.|.|+|||++.
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~ 76 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFND 76 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCC
Confidence 478999999999998655 356799999999987 789999999999999999999998832 4789999999998
Q ss_pred CCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
. ++|++||++.+++.++...+.....|..|.. .++..|+|+++++|.+
T Consensus 77 ~---~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 77 K---RKDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred C---CCCceeEEEEEEHHHhccCccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 8 6799999999999998765543333555543 3345899999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-16 Score=146.95 Aligned_cols=95 Identities=19% Similarity=0.329 Sum_probs=83.9
Q ss_pred cEEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 5 QKLIVEVVDARNLLPKDG----HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~----~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
|+|.|+|++|++|++.+. .+.+||||++.++++.+||+++++++||+|||+|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 789999999999998764 2458999999999999999999999999999999999876542 4689999999999
Q ss_pred CCCCCCCceeEEEEEECccceecC
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKG 104 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~ 104 (1061)
+ ++|++||++.++|.+|....
T Consensus 79 ~---~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 79 F---SFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred C---CCCcceEEEEEEHHHHHhhC
Confidence 8 68999999999999976543
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=150.63 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=100.8
Q ss_pred CcEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEECCeE-EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPKDG----------HGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~----------~g~~dPyv~v~~~~~~-~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
.|.|+|+|++|++|...+. .|.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 5789999999999998885 2689999999998854 799999999999999999999973 47899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceec-CceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK-GEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
|.|||++.+ +++++||++.++|.++... +.....|++|.+ .|+|++++.|..
T Consensus 78 ~~v~d~~~~---~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAI---GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCC---CCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999988 5789999999999997764 455678999973 799999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-16 Score=149.43 Aligned_cols=119 Identities=23% Similarity=0.414 Sum_probs=99.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------------CeEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeE
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY-------------GQRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMF 71 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------------~~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L 71 (1061)
+..|++++|+||+ ++..|++||||++.+. +++++|+++++++||.| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 5689999999997 7778999999999994 24789999999999999 9999999853 3679
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCc--eeeEEEeccccCCCCeeeeEEEEEE
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGE--EALIYYPLEKKSLLSWIQGEVGLKI 130 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~l~l~~ 130 (1061)
.|+|||++..+....+++||++.+++.++...+. ....|++|.+++..+.++|+|.+.+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 9999998754100127999999999999876643 3668999999999999999999986
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=152.49 Aligned_cols=106 Identities=24% Similarity=0.407 Sum_probs=90.0
Q ss_pred CcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe-
Q 001521 4 IQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF- 76 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~- 76 (1061)
.+.|.|+|++|+||.+++ ..|.+||||++.+. + .++||+++++++||+|||+|.|.+. .. +..|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~---~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS-PT---GKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-CC---CCEEEEEEEe
Confidence 578999999999998874 57899999999993 2 3789999999999999999999998 33 589999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|++.+ ++++|||++.|+|.++ ..+.....||+|.+..
T Consensus 104 d~~~~---~~~~~iG~~~i~L~~l-~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRM---DKKVFMGVAQILLDDL-DLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCC---CCCceEEEEEEEcccc-cCCCCceeEEecCCcc
Confidence 57777 6899999999999996 3344456899998753
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=151.57 Aligned_cols=107 Identities=28% Similarity=0.525 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||++++.. |.+||||++.+. ..+++|+++++++||.|||+|.|.+..... ....|.|+||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l-~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL-PTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh-CCCEEEEEEE
Confidence 457899999999999999975 899999999993 246899999999999999999999875432 1468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.++|.++- .......||+|.
T Consensus 92 d~~~~---~~~~~iG~~~i~L~~~~-~~~~~~~W~~L~ 125 (125)
T cd08393 92 HRDSL---GRNSFLGEVEVDLGSWD-WSNTQPTWYPLQ 125 (125)
T ss_pred eCCCC---CCCcEeEEEEEecCccc-cCCCCcceEECc
Confidence 99998 68999999999999963 334456799873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=150.99 Aligned_cols=108 Identities=23% Similarity=0.446 Sum_probs=91.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+++.. |.+||||++.+. ..++||+++++++||+|||+|.|.+..... .+..|.|.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l-~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL-SSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh-CCcEEEEEEE
Confidence 458999999999999999874 999999999983 247899999999999999999999876432 2478999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceec--CceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.|+|.++.-. +.....||+|.
T Consensus 92 ~~~~~---~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HSRTL---KRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eCCCC---cCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 99998 6799999999999996333 34566899873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=148.38 Aligned_cols=104 Identities=21% Similarity=0.353 Sum_probs=89.0
Q ss_pred cEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 5 QKLIVEVVDARNLLPKDGH-GTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
|+|+|+|++|++|+..+.. |.+||||++.+.+ ..++|+++++++||.|||+|.|.+...+......|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 7899999999999999987 9999999999843 57899999999999999999998876532224789999999999
Q ss_pred CCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+ ++|++||++.+++.++... ..|+++..
T Consensus 81 ~---~~dd~lG~~~i~l~~l~~~----~~~~~~~~ 108 (111)
T cd04041 81 F---TADDRLGRVEIDLKELIED----RNWMGRRE 108 (111)
T ss_pred C---CCCCcceEEEEEHHHHhcC----CCCCcccc
Confidence 8 6799999999999998633 24887754
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=143.02 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=83.7
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
..|.|.|+|++|++|+ + .|.+||||.+.+.. .+.+|+++++|+||+|||.|.|+|.. +...|.|.||
T Consensus 12 ~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~ 85 (118)
T cd08677 12 QKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLR 85 (118)
T ss_pred cCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEE
Confidence 4689999999999996 2 35699999999754 45699999999999999999999873 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
|+|.++ ++++||++.++++++..+...++|..|
T Consensus 86 d~Drfs-----------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 86 CCDRFS-----------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred eCCCCC-----------CCceEEEEEEccccccCCccccchhcC
Confidence 999987 689999999999987544444778654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-16 Score=149.95 Aligned_cols=107 Identities=28% Similarity=0.445 Sum_probs=90.1
Q ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+. .|.+||||++.+. ..++||+++++++||.|||+|.|.+..... .+..|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l-~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL-ETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh-CCCEEEEEEE
Confidence 56899999999999998875 5899999999993 246899999999999999999999876432 1468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
|++.+ +++++||++.+++.++... .....|++|.
T Consensus 92 d~~~~---~~~~~lG~~~i~l~~~~~~-~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRF---GRNTFLGEVEIPLDSWNFD-SQHEECLPLH 125 (125)
T ss_pred ECCCC---CCCcEEEEEEEeCCccccc-CCcccEEECc
Confidence 99998 6899999999999996443 4466799974
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-17 Score=175.89 Aligned_cols=110 Identities=30% Similarity=0.553 Sum_probs=97.5
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE-----CCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDY-----YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
...|.|+|.+|+||.++|.+|.|||||++.+ +..+++|++++.+|||+|||+|.|.+...+. +++|.|+||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecc
Confidence 4679999999999999999999999999999 2368999999999999999999999998876 68999999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeE
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGE 125 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~ 125 (1061)
|+. +++||+|...+.+++|.+.+..+ ||.|. +++.||
T Consensus 257 DrT---sRNDFMGslSFgisEl~K~p~~G--WyKlL-----sqeEGE 293 (683)
T KOG0696|consen 257 DRT---SRNDFMGSLSFGISELQKAPVDG--WYKLL-----SQEEGE 293 (683)
T ss_pred ccc---ccccccceecccHHHHhhcchhh--HHHHh-----hhhcCc
Confidence 999 79999999999999998876554 99654 445665
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=147.02 Aligned_cols=105 Identities=22% Similarity=0.434 Sum_probs=91.3
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDG-HGTSSPYVVIDYYGQRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|++|+||+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+..... .+..|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTY--- 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCC---
Confidence 6899999999998884 789999999999999999999999999999 9999999987542 146899999999998
Q ss_pred CCCceeEEEEEECccceec--CceeeEEEeccc
Q 001521 85 TRNNFLGRIRLSSSQFVKK--GEEALIYYPLEK 115 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~ 115 (1061)
+++++||++.+++.++... +.....||+|.+
T Consensus 77 ~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 6799999999999998764 233567999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-16 Score=146.50 Aligned_cols=113 Identities=28% Similarity=0.406 Sum_probs=97.1
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC---eEEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS---KWIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~---~~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 722 (1061)
|+|+|++|++|++. |..|.+||||++.+++ ...||++++++.||.|||.|.|.+... ...|.|+|||++...
T Consensus 2 L~V~vi~a~~L~~~---~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~- 77 (119)
T cd04036 2 LTVRVLRATNITKG---DLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVM- 77 (119)
T ss_pred eEEEEEEeeCCCcc---CCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCC-
Confidence 78999999999874 7788999999999753 456999999999999999999998754 467999999998763
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|++||++.++++++..+.....||+|... ..|+|++++.++
T Consensus 78 -----------~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 78 -----------DDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred -----------CcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 88999999999999998888999999642 239999888764
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=147.20 Aligned_cols=114 Identities=24% Similarity=0.488 Sum_probs=99.0
Q ss_pred eEEEEEEEeecCCCCCcccCC------CCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNG------KSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~------~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~ 717 (1061)
|.|+|+|++|++|+.. |. .|.+||||++++++...+|++++++.||.|||.|.|.+.+ ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~---d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAK---DKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCccc---ccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEec
Confidence 6899999999999875 42 4789999999999988999999999999999999999975 468999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
+.. +|++||++.++++++..+.....||+|... ..|+|+|++.|
T Consensus 78 ~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 78 DPD------------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred CCC------------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 865 388999999999999887777899999642 24999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.5e-16 Score=147.41 Aligned_cols=126 Identities=21% Similarity=0.332 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
.|+|+|++|++|+.. |..|.+||||++++++...+|+++.+++||.|||.|.|.+..+...|.|+|||++......-
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999874 78889999999999998899999999999999999999998777889999999985310000
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
..+.....|++||++.+++.++.... ..||+|........ ..|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~~-~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCCc-EeEEEEEEC
Confidence 00000125889999999999986544 78999987654333 359998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=145.56 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=87.0
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-C----C--eEEEecccCCCCCCccccEEEEEEecC----CcEEEEEE
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-A----S--KWIRTRTVSDSLEPRWNEQYTWKVYDP----CTVLALGV 714 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-~----~--~~~rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~v 714 (1061)
+|+|+|++|++|+.. | .|.+||||++++ | . ++.+|+++.+++||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~---d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ---T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc---c-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 489999999999874 5 489999999996 3 2 246899999999999999999999732 25799999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
||++..+ +|++||++.++|+++..+.....|++|...
T Consensus 77 ~D~d~~~-----------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 77 KDYCFAR-----------DDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred EEecccC-----------CCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 9998654 588999999999999998888899999654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-16 Score=151.51 Aligned_cols=116 Identities=20% Similarity=0.285 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEe---------------c
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVY---------------D 705 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~---------------~ 705 (1061)
+|.|+|++|+||.+ .+|.+||||++.+.+ ...||+++++++||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 48999999999975 468899999999876 5669999999999999999999995 1
Q ss_pred C-CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC-cEEeeEEeceecCCCC---------CccccEEE
Q 001521 706 P-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG-KVYRNTYPLLLLGSNG---------MTKMGEIE 774 (1061)
Q Consensus 706 ~-~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~---------~~~~G~i~ 774 (1061)
. ...|.|.|||++..+ .|++||++.|+|..+..+ .....||+|..+.... ....|+|+
T Consensus 76 ~~~~~L~i~V~d~~~~~-----------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~ 144 (148)
T cd04010 76 AEKLELRVDLWHASMGG-----------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLR 144 (148)
T ss_pred ccEEEEEEEEEcCCCCC-----------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEE
Confidence 1 257999999998765 588999999999999876 4568999998764322 22347888
Q ss_pred EEE
Q 001521 775 VAV 777 (1061)
Q Consensus 775 l~~ 777 (1061)
|.+
T Consensus 145 ~~~ 147 (148)
T cd04010 145 LKI 147 (148)
T ss_pred Eec
Confidence 765
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=146.79 Aligned_cols=104 Identities=18% Similarity=0.288 Sum_probs=91.1
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEe
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFD 716 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d 716 (1061)
..|.|.|+|++|+||+++ |..|.+||||.++++ ....||+++++++||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 357999999999999875 788899999999973 3456999999999999999999998743 4689999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++.++ +|++||++.|+|+++..+...+.||+|+
T Consensus 91 ~~~~~-----------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS-----------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC-----------CCceeEEEEEecccccCCCCcceEEECc
Confidence 98875 5889999999999998777889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-16 Score=144.14 Aligned_cols=99 Identities=28% Similarity=0.414 Sum_probs=88.5
Q ss_pred EEEEEEEEeecCCC-----CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCC
Q 001521 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPP 410 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-----~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d 410 (1061)
.|.|+|++|+||+. .+||||+|+++++.++|++++++.||+|||.|.|.+.++. .+.|.|+|+|.+. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~v~v~d~~~------~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE-NQELEIEVKDDKT------G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC-CCEEEEEEEECCC------C
Confidence 38899999999975 8999999999999999999999999999999999999877 8899999999863 7
Q ss_pred CeeEEEEEECcccCCCCCCCCCCCCeeEEccCCC
Q 001521 411 GFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGG 444 (1061)
Q Consensus 411 ~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~ 444 (1061)
++||++.++|.++... .....++||+|++.+
T Consensus 74 ~~iG~~~i~l~~l~~~---~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKE---PDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhcc---ccceeeeeEecCCCC
Confidence 8999999999999874 134578999998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-15 Score=145.98 Aligned_cols=117 Identities=24% Similarity=0.351 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|+..+..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~- 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV- 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC-
Confidence 6899999999999999999999999999864 4689999999999999999999998754 47899999999988
Q ss_pred CCCCCceeEEEEEECccceec--CceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK--GEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
+++++||++.+++.++... +.....|++|.+ .|+|++++.+...
T Consensus 78 --~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 78 --GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred --CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 5799999999999875332 344568999864 6899999888754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-16 Score=147.58 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=91.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC------CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY------GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~------~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+..|.+||||++.+- ..+++|+++++++||+|||+|.|.+...+. .+..|.|+||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L-~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL-YQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh-hcCEEEEEEE
Confidence 568999999999999999888999999999982 247899999999999999999999876543 2689999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++.+ +++++||++.|+|.++-..+.....||.|
T Consensus 91 ~~~~~---~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPD---QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCC---CceeEEEEEEEEhhhccCCCccccccccC
Confidence 99988 68999999999999974444345569875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=147.42 Aligned_cols=105 Identities=24% Similarity=0.391 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||.+++ .|.+||||++.+.. .+++|+++++++||.|||+|.|.+..... ...|.|+|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~--~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY--QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh--CCEEEEEEEC
Confidence 4588999999999999998 88999999999942 46799999999999999999999876543 3579999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
++... +++++||++.|++.++. .+.....||.|
T Consensus 87 ~~~~~--~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS--RDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCc--CCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 99872 24789999999999986 45556789976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=144.90 Aligned_cols=105 Identities=23% Similarity=0.390 Sum_probs=92.3
Q ss_pred ccEEEEEEEEeecCCC-CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCC---CCeEEEEEEcCCCCCCCCC
Q 001521 334 MHYLFVRVVKARFLPT-KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPES---SSFLEVSVWDPPRGDVAAP 409 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~---~~~L~i~V~d~d~~~~~~~ 409 (1061)
...|.|+|++|+||++ .+||||+|++++++++|++++++.||.|||+|.|.+..... ...|.|.|||++. +++
T Consensus 3 ~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~---~~~ 79 (111)
T cd04011 3 DFQVRVRVIEARQLVGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS---LRS 79 (111)
T ss_pred cEEEEEEEEEcccCCCCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc---ccc
Confidence 5679999999999976 89999999999999999999999999999999999765421 4689999999987 678
Q ss_pred CCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC
Q 001521 410 PGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG 443 (1061)
Q Consensus 410 d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~ 443 (1061)
|++||++.++|.++... +++....+||+|.++
T Consensus 80 ~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 80 DTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred CCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 99999999999999874 456788999999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=144.17 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=100.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCcee
Q 001521 11 VVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFL 90 (1061)
Q Consensus 11 v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~l 90 (1061)
|++|+||+. ..|++||||++.+++.+++|+++++++||+|||+|.|.+.... .....|.|+|||++.. ++|++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~---~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKV---GRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCC---CCCceE
Confidence 789999988 6789999999999999999999999999999999999997642 1258899999999998 679999
Q ss_pred EEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCC
Q 001521 91 GRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVP 137 (1061)
Q Consensus 91 G~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 137 (1061)
|++.+++.++... .....|++|.+... ....|+|+++++|.+...
T Consensus 76 G~~~~~l~~l~~~-~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 76 GSATVSLQDLVSE-GLLEVTEPLLDSNG-RPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEhhHcccC-CceEEEEeCcCCCC-CcccEEEEEEEEEeCCCC
Confidence 9999999997654 44567999986542 335799999999998544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=144.48 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=86.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
.+.|.|+|++|+||+++ |.. |.+||||.+++.+ .+.||+++++++||+|||.|.|++... ...|.|.|
T Consensus 14 ~~~L~V~V~~a~nL~~~---d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V 90 (128)
T cd08392 14 TSCLEITIKACRNLAYG---DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV 90 (128)
T ss_pred CCEEEEEEEecCCCCcc---CCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence 46999999999999885 664 8999999999643 256999999999999999999998642 47899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC---cEEeeEEec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG---KVYRNTYPL 759 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 759 (1061)
||++..+ ++++||++.|+|+++... .....||+|
T Consensus 91 ~~~~~~~-----------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 91 WHSRTLK-----------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EeCCCCc-----------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998765 588999999999999653 355789998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=141.88 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
.|.|.|+|++|++|.. .+..||||++++|+++.+|++++++ ||.|||.|.|.+.+....|.|+|||++..
T Consensus 1 m~~L~V~Vv~Ar~L~~------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 1 MSLLCVLVKKAKLDGA------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred CceEEEEEEEeeCCCC------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 3689999999999954 2356999999999999999999885 99999999999998888899999998864
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEE--eeEEeceec
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVY--RNTYPLLLL 762 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 762 (1061)
.|++||++.|+|+++..+... ..||+|...
T Consensus 71 ---------~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 ---------WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred ---------CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 399999999999998765543 789999855
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-15 Score=146.87 Aligned_cols=107 Identities=21% Similarity=0.407 Sum_probs=92.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--C-CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY--Y-GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||.+++..|.+||||++.+ + +..++|+++++++||.|||+|.|.+..... ....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l-~~~~l~i~V~d~~ 92 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQEL-PKRTLEVLLYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHh-CCCEEEEEEEECC
Confidence 45899999999999999999999999999999 3 367899999999999999999999876432 1468999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++...+ ..+.|++|.
T Consensus 93 ~~---~~~~~iG~~~i~l~~~~~~~-~~~~W~~l~ 123 (124)
T cd08387 93 QF---SRDECIGVVELPLAEVDLSE-KLDLWRKIQ 123 (124)
T ss_pred CC---CCCceeEEEEEecccccCCC-CcceEEECc
Confidence 98 68999999999999975444 567899875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=143.77 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=86.6
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec--CCcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD--PCTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~--~~~~l~i~v~d~ 717 (1061)
|.|.|+|++|+||+++ | .|.+||||.+.+.+ .+.||+++.+++||.|||.|.|++.. ....|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~---~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRST---N-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCC---C-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 6899999999999886 6 78999999999754 24589999999999999999999863 336789999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
+... .++++||++.|+|.++..+.....||.|
T Consensus 88 ~~~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8754 1478999999999999877777899986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=145.84 Aligned_cols=108 Identities=20% Similarity=0.373 Sum_probs=89.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEe-ecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGH-GTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFN-VGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~-g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~-v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+.. |.+||||++.+. ++++||+++++++||.|||+|.|. +.... .....|.|+|||
T Consensus 14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~-~~~~~L~~~V~d 92 (128)
T cd08388 14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ-LQDLSLHFAVLS 92 (128)
T ss_pred CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH-hCCCEEEEEEEE
Confidence 457999999999999998875 899999999984 357899999999999999999994 43322 113579999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceec-CceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKK-GEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~ 114 (1061)
+|.+ ++|++||++.++|.++--. +.+...|.+|.
T Consensus 93 ~d~~---~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 93 FDRY---SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cCCC---CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9998 6899999999999997433 34567899875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=147.21 Aligned_cols=107 Identities=27% Similarity=0.537 Sum_probs=89.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..+.+||||++.+.+ .+++|+++++++||.|||+|.|.+..........|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 4589999999999999999889999999999954 57899999999999999999998654321124789999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
++.. +++++||++.+++.+....+ ...||+|+
T Consensus 94 ~~~~---~~~~~iG~~~i~l~~~~~~~--~~~W~~L~ 125 (125)
T cd04031 94 YDRD---GENDFLGEVVIDLADALLDD--EPHWYPLQ 125 (125)
T ss_pred CCCC---CCCcEeeEEEEecccccccC--CcceEECc
Confidence 9998 67999999999999833322 34799984
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=149.15 Aligned_cols=106 Identities=24% Similarity=0.401 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCC--------------CCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeE
Q 001521 6 KLIVEVVDARNLLPKDGH--------------GTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMF 71 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~--------------g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L 71 (1061)
.|.|+|++|++|+.+|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. .+.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 478999999999998854 378999999999999999999999999999999999765432 4789
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCce------eeEEEecccc
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE------ALIYYPLEKK 116 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~------~~~w~~L~~~ 116 (1061)
.|+|||+|.. ++|++||++.+++.++...+.. +..|+.|...
T Consensus 79 ~~~v~D~d~~---~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRV---GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCC---CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 9999999998 6799999999999997665532 3468877654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=145.18 Aligned_cols=108 Identities=25% Similarity=0.390 Sum_probs=91.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---CCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY---YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+ ++++++|+++++++||.|||+|.|.+..........|.++|||++
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence 46789999999999999998999999999999 347889999999999999999999854332122467999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++. .+.....|+.|.
T Consensus 94 ~~---~~~~~iG~~~i~l~~l~-~~~~~~~W~~l~ 124 (125)
T cd08386 94 RF---SRNDPIGEVSLPLNKVD-LTEEQTFWKDLK 124 (125)
T ss_pred CC---cCCcEeeEEEEeccccc-CCCCcceEEecC
Confidence 98 67999999999999965 454566899875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=145.03 Aligned_cols=107 Identities=22% Similarity=0.382 Sum_probs=91.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..+.|.|+|++|+||+.++..|.+||||++.+.. ..++|+++++++||.|||+|.|.+..... .+..|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l-~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL-GNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHh-CCCEEEEEEEeCC
Confidence 4589999999999999999889999999999843 57899999999999999999999875321 1468999999999
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
.+ +++++||++.+++.++.. +.....|++|.
T Consensus 93 ~~---~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 93 RF---SKHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred CC---CCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 98 679999999999999644 55566899875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=143.69 Aligned_cols=119 Identities=27% Similarity=0.358 Sum_probs=99.2
Q ss_pred ceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCC--eEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYAS--KWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGI 720 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~--~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 720 (1061)
+|.|+|+|++|++|+.. + ..|.+||||++.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~---~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGS---DIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCcc---cccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 58999999999999753 3 456799999999987 67799999999999999999999987678999999999876
Q ss_pred CCCCCCCCCCCCCCcceEEEEEEcccccCCcEEe-eEEeceecCCCCCccccEEEEEEEEE
Q 001521 721 FEGENGSMETTRPDCRIGKVRIRISTLETGKVYR-NTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+ +|++||++.++|.++..+...+ .++++. ..+ +..|+|++.++|-
T Consensus 78 ~-----------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 78 R-----------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred C-----------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 5 5899999999999998776554 344553 223 3359999999984
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-15 Score=142.51 Aligned_cols=103 Identities=27% Similarity=0.367 Sum_probs=89.8
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC---eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEeC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS---KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDS 717 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~---~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d~ 717 (1061)
.|.|.|+|++|+||++. |..|.+||||++.+.+ ...||+++++++||.|||.|.|.+... ...|.|.|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~---d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAM---DMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 47899999999999874 7788999999999643 456999999999999999999998742 46899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
+..+ +|++||++.++|+++..+...++||+|.
T Consensus 92 d~~~-----------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS-----------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC-----------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9875 5889999999999998877778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=141.70 Aligned_cols=101 Identities=28% Similarity=0.404 Sum_probs=89.1
Q ss_pred EEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeEEEecccCCCCCCcc-ccEEEEEEecC---CcEEEEEEEeCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKWIRTRTVSDSLEPRW-NEQYTWKVYDP---CTVLALGVFDSWGIF 721 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 721 (1061)
|.|+|++|++|+++ | ..|.+||||++++++...||+++++++||.| ||.|.|.+... ...|.|+|||++..+
T Consensus 1 l~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVM---DRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcc---ccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 57999999999886 5 3688999999999998899999999999999 99999999853 378999999999876
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccC---CcEEeeEEecee
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLET---GKVYRNTYPLLL 761 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 761 (1061)
+|++||++.++++++.. +.....||+|..
T Consensus 78 -----------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -----------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -----------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 58899999999999977 345789999863
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-16 Score=181.14 Aligned_cols=381 Identities=18% Similarity=0.164 Sum_probs=235.2
Q ss_pred EEEEEEEEeecCCC-----CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEeccCCCC--------CCeEEEEEEcCC
Q 001521 336 YLFVRVVKARFLPT-----KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPES--------SSFLEVSVWDPP 402 (1061)
Q Consensus 336 ~L~V~v~~a~~L~~-----~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~--------~~~L~i~V~d~d 402 (1061)
-|+++|.+|++|.+ .+|||+.|.+-++...|.++.+|+||.|+++..|.-.+... -..+.++|+|.|
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 46788889999976 89999999999999999999999999999999997322210 467889999998
Q ss_pred CCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCCCccccceEEEEEEeccCCCCCCCcccc--CCCCCccccc
Q 001521 403 RGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAWKT--DTAGNVNSKA 480 (1061)
Q Consensus 403 ~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~--~~~~~~~~~~ 480 (1061)
. .+.++++|+......=... .-.-.|+++..++...|++.++..+-...- +-.+.. +......+..
T Consensus 287 r---~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~~l~gd~l~a~eliq~~~---~i~~p~~~~~~~~~~vp~ 354 (1105)
T KOG1326|consen 287 R---SGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGAFLDGDVLIAAELIQIGK---PIPQPPPQREIIFSLVPK 354 (1105)
T ss_pred h---hchHHhhcccccceEEEec------CCccceEEeecccccccchhHHHHHHhhcC---CCCCCCcccccceecccc
Confidence 8 6899999998764332221 123489999887666677665421110000 000000 0000000111
Q ss_pred ccccCCceEEEEEEEEEeeCCCCCcccC---CCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEE-eeccCC----CC
Q 001521 481 KVYVSPKLWYLRATVIEAQDILPPVAAL---KEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLF-VAAEPF----TD 552 (1061)
Q Consensus 481 ~~~~~~~l~~L~V~V~~a~~L~~~~d~~---~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f-~v~~~~----~~ 552 (1061)
++ .|.+..-.+.| -+.+|..+ ... ....|-+.+.+|++.+++..+.....||.|+..|.+ .+..+. -.
T Consensus 355 ~i--Rp~~q~~~~ev-l~wgLrn~-k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~p 430 (1105)
T KOG1326|consen 355 KI--RPKTQIGKAEL-LMWGLRNP-KKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMP 430 (1105)
T ss_pred CC--Ccceeeeeeeh-hhhhhccc-ccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCc
Confidence 11 12221111111 23455444 322 346788899999999999888756678888876643 333333 34
Q ss_pred eEEEEEEeccC-CCCceeEEEEEecc-ccccccc------c------------------ccccceEEEcccCC-------
Q 001521 553 QLSFTLENRQH-KGSVALGVTRVPLT-AVERRVD------D------------------RKVASRWFTFENTN------- 599 (1061)
Q Consensus 553 ~L~i~V~D~d~-~~d~~lG~~~i~l~-~l~~~~~------~------------------~~~~~~w~~L~~~~------- 599 (1061)
.+.+.|.|.+. +....+|.|.+.-. ...-+.. . +...+.|+......
T Consensus 431 pl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~ 510 (1105)
T KOG1326|consen 431 PLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREV 510 (1105)
T ss_pred cceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCccccccceeh
Confidence 89999999988 88999999987532 2111000 0 00011111111100
Q ss_pred ----------C---cc--CCccceEEEEEEee----------------------CCc--ccccCcc----------ccc-
Q 001521 600 ----------D---EK--RAYKGRVHLRLCFD----------------------GGY--HVMDEAA----------HVC- 629 (1061)
Q Consensus 600 ----------~---~~--~~~~G~i~l~i~l~----------------------~~~--~~~~~~~----------~~~- 629 (1061)
. +. ....+...|.++-. |.. ...+.+. +..
T Consensus 511 ~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~ 590 (1105)
T KOG1326|consen 511 DWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVP 590 (1105)
T ss_pred hhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceeeecCC
Confidence 0 00 01111233333310 000 0000000 000
Q ss_pred ----CCCchhh-hccC--CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE--EecccCCCCCCccccEEE
Q 001521 630 ----SDYRPTA-RQLW--KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI--RTRTVSDSLEPRWNEQYT 700 (1061)
Q Consensus 630 ----~d~~~~~-~~~~--~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~--rT~~~~~~~~P~wne~~~ 700 (1061)
++..|.. .++. .+..-.++|.|++|.+|.+ +|.+|.+|||+.+.+|++.+ +++.+.+|+||+|+++|.
T Consensus 591 ~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p---~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfe 667 (1105)
T KOG1326|consen 591 RNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQP---SDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFE 667 (1105)
T ss_pred CccCCCCChhhhhcccccCcceeeEEEEEEEeeeccc---cCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHH
Confidence 0101110 0111 1334567899999999998 49999999999999999986 888999999999999999
Q ss_pred EEEecCC-cEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEccc
Q 001521 701 WKVYDPC-TVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIST 746 (1061)
Q Consensus 701 ~~v~~~~-~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~ 746 (1061)
+....+. ..++++|||+|..+ .|+.||+..|.|..
T Consensus 668 l~~~lp~ek~l~v~vyd~D~~~-----------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 668 LECLLPFEKDLIVEVYDHDLEA-----------QDEKIGETTIDLEN 703 (1105)
T ss_pred hhcccchhhcceeEEEEeeccc-----------ccchhhceehhhhh
Confidence 9998776 67999999999886 59999999998865
|
|
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=139.35 Aligned_cols=96 Identities=19% Similarity=0.301 Sum_probs=82.7
Q ss_pred eEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC--CcEEEEEEEeCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALGVFDSWGIF 721 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 721 (1061)
|.|.|+|++|++|++.+... ..+.+||||++.++++..||+++++++||+|||.|.|.+.+. ...|.|.|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999863221 224689999999999999999999999999999999999753 358999999999876
Q ss_pred CCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
+|++||++.++|++|..+.
T Consensus 81 -----------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----------CCcceEEEEEEHHHHHhhC
Confidence 5899999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=143.24 Aligned_cols=109 Identities=26% Similarity=0.378 Sum_probs=94.7
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCC-CCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVR-DLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~-tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|.|+|++|++|+..+..+++||||+++++++.++|+++.+ ++||.|||+|.|.+..........|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-- 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-- 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC--
Confidence 689999999999999988899999999999998899999875 89999999999999886321247899999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
+++++||++.+++.++...+. ...|++|.+.+
T Consensus 79 -~~d~~iG~~~i~l~~l~~~~~-~~~~~~l~p~~ 110 (124)
T cd04049 79 -SDDDFIGEATIHLKGLFEEGV-EPGTAELVPAK 110 (124)
T ss_pred -CCCCeEEEEEEEhHHhhhCCC-CcCceEeeccc
Confidence 679999999999999876543 46799998854
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=142.94 Aligned_cols=115 Identities=24% Similarity=0.334 Sum_probs=99.3
Q ss_pred ceEEEEEEEeecCCCCCcccCC----------CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNG----------KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLAL 712 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~----------~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i 712 (1061)
.|.|+|+|++|++|.+. |. .|.+||||++.++++.+ +|+++++++||.|||.|.|.+. ....|.|
T Consensus 3 ~g~l~V~v~~a~~L~~~---d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~ 78 (132)
T cd04014 3 TGTLKIKICEAVDLKPT---DWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLEL 78 (132)
T ss_pred ceEEEEEEEEecCCCCC---CchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEE
Confidence 58999999999999875 43 36899999999998775 9999999999999999999996 4578999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC--CcEEeeEEeceecCCCCCccccEEEEEEEEEe
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET--GKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 781 (1061)
.|||++..+ +|++||++.++|+++.. +...+.|++|. ..|.|++++.+..
T Consensus 79 ~v~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 79 TVFHDAAIG-----------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EEEeCCCCC-----------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999998765 58899999999999887 45568999995 2399999998874
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=149.95 Aligned_cols=109 Identities=25% Similarity=0.398 Sum_probs=91.6
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..|.|.|+|++|+||+..+..|.+||||++.+. ..+++|+++++++||.|||+|.|.+.......+..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468999999999999999989999999999882 368899999999999999999998643321224689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.++...+. ...|+.|.+
T Consensus 105 ~d~~---~~d~~lG~v~i~l~~~~~~~~-~~~w~~~~~ 138 (162)
T cd04020 105 HDKL---SSNDFLGGVRLGLGTGKSYGQ-AVDWMDSTG 138 (162)
T ss_pred CCCC---CCCceEEEEEEeCCccccCCC-ccccccCCh
Confidence 9998 679999999999999765543 467988865
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=143.42 Aligned_cols=107 Identities=25% Similarity=0.355 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEe-ecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFN-VGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~-v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||++.+..|.+||||++.+. .++++|+++++ +||+|||+|.|. +.... ..+..|.|+|||+
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~-l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEE-LNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHH-hccCEEEEEEEEC
Confidence 457899999999999999989999999998772 36889999888 999999999998 54432 2257899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+.+ +++++||++.++|.++ ..+.....|++|.+
T Consensus 92 ~~~---~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p 124 (124)
T cd08389 92 ERM---RKERLIGEKVVPLSQL-NLEGETTVWLTLEP 124 (124)
T ss_pred CCc---ccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence 998 6899999999999997 34445678999863
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=142.98 Aligned_cols=90 Identities=31% Similarity=0.564 Sum_probs=83.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~ 84 (1061)
|.|+|+|++|+||...+. +.+||||++++++++++|+++++++||.|||+|.|.+.+. ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~--- 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTF--- 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCC---
Confidence 789999999999998887 8999999999999999999999999999999999999876 37899999999999
Q ss_pred CCCceeEEEEEECcccee
Q 001521 85 TRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 85 ~~d~~lG~~~v~l~~l~~ 102 (1061)
++|++||++.+++.++..
T Consensus 74 ~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCEEEEEEEEHHHhhh
Confidence 679999999999988654
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=141.87 Aligned_cols=118 Identities=23% Similarity=0.318 Sum_probs=95.2
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-CeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-SKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGEN 725 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~ 725 (1061)
|+|+|++|++|..+ |..|.+||||++.++ .+..||+++++++||.|||.|.|.+.. ...|.|+|||++..+.
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~--- 74 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK--- 74 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC---
Confidence 78999999999875 778899999999996 566799999999999999999999965 7899999999988752
Q ss_pred CCCCCCCCCcceEEEEEEcccccCCcE-EeeEEeceecCCCC-CccccEEEEEE
Q 001521 726 GSMETTRPDCRIGKVRIRISTLETGKV-YRNTYPLLLLGSNG-MTKMGEIEVAV 777 (1061)
Q Consensus 726 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~-~~~~G~i~l~~ 777 (1061)
..|++||++.++++++..... ...||+|....... ....|+|.+.+
T Consensus 75 ------~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 ------KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ------CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 126899999999999875442 25699997665422 11238887764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-15 Score=141.27 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=86.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEE-Ee--c-CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWK-VY--D-PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~-v~--~-~~~~l~i~v~ 715 (1061)
.+.|+|+|++|+||++. |.. |.+||||++.+. .+..||+++++++||.|||.|.|. +. + ....|.+.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~---~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAM---DEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCC---CCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 46899999999999875 665 889999999974 345699999999999999999994 33 2 2357999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCC--cEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG--KVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 760 (1061)
|++..+ +|++||++.|+|+++... +...+|.+|.
T Consensus 92 d~d~~~-----------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS-----------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC-----------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998875 588999999999999655 5678999885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=144.89 Aligned_cols=118 Identities=19% Similarity=0.346 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccC-CCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAV-RDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~-~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~~ 82 (1061)
.|+|+|++|++|+..+..+++||||++++++ ++++|+++. ++.||.|||.|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~- 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS- 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-
Confidence 4899999999999998889999999999988 899999985 58999999999999987621 1137899999999997
Q ss_pred CCCCCceeEEEEEECccceecCce----eeEEEeccccCCCCeeeeEEEE
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEE----ALIYYPLEKKSLLSWIQGEVGL 128 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~l~l 128 (1061)
++|++||++.+++.++...... ...||+|.+.. ++..|+|++
T Consensus 80 --~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 80 --LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred --CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 5799999999999998765542 46799998754 667898874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-15 Score=141.89 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=85.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec----CCcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v 714 (1061)
.|.|.|+|++|+||..+ |..+.+||||++++++ ...||+++++++||.|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V 91 (125)
T cd04031 15 TSQLIVTVLQARDLPPR---DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence 47899999999999875 7778999999999764 45699999999999999999999754 347899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||++..+ .|++||++.++|++..... ..+||+|.
T Consensus 92 ~d~~~~~-----------~~~~iG~~~i~l~~~~~~~-~~~W~~L~ 125 (125)
T cd04031 92 WDYDRDG-----------ENDFLGEVVIDLADALLDD-EPHWYPLQ 125 (125)
T ss_pred EeCCCCC-----------CCcEeeEEEEecccccccC-CcceEECc
Confidence 9998875 5889999999999832222 26899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-15 Score=142.80 Aligned_cols=120 Identities=20% Similarity=0.266 Sum_probs=98.1
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccC---------CCCeEEEEEEe
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP---------FTDQLSFTLEN 560 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~---------~~~~L~i~V~D 560 (1061)
.|+|+|++|++|+.+ |..+.+||||++.++++..||++++ ++.||.|||.|.|.+... ....|.|+|||
T Consensus 2 ~l~v~V~~a~~L~~~-d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d 79 (135)
T cd04017 2 QLRAYIYQARDLLAA-DKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFD 79 (135)
T ss_pred EEEEEEEEeecCcCC-CCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEe
Confidence 589999999999998 9999999999999999999999998 899999999999975321 12469999999
Q ss_pred ccC-CCCceeEEEEE-eccccccccccccccceEEEcccCCCccCCccceEEEEEEee
Q 001521 561 RQH-KGSVALGVTRV-PLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFD 616 (1061)
Q Consensus 561 ~d~-~~d~~lG~~~i-~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~ 616 (1061)
++. +++++||++.+ ++..+... .......+|++|... +...|+|++.+.+-
T Consensus 80 ~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~~----~~~~Geil~~~~~~ 132 (135)
T cd04017 80 QDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYKG----GQSAGELLAAFELI 132 (135)
T ss_pred CcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeecC----CCchhheeEEeEEE
Confidence 998 88999999987 44444321 234567899999752 45789999988763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=142.06 Aligned_cols=105 Identities=26% Similarity=0.364 Sum_probs=89.6
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.+.|.|+|++|+||+.+ |..+.+||||++.+. ....||++++++.||.|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC---DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCc---cCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 47899999999999875 778899999999975 3557999999999999999999998632 378999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
|++.... .+|++||++.|+|.++..+.....||+|.
T Consensus 92 ~~~~~~~---------~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 92 NSKSFLS---------REKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ECCcccC---------CCCceEEEEEEecccccccCCccceEECc
Confidence 9987521 15889999999999998777778999983
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.3e-15 Score=141.70 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=89.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe---CCeEEEecccCCCCCCccccEEEEEEec----CCcEEEEEEEe
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGVFD 716 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v~d 716 (1061)
.+.|.|.|++|+||+.+ |..|.+||||.+.+ ++...||++++++.||.|||.|.|.+.. ....|.++|||
T Consensus 15 ~~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCc---cCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 46899999999999875 77889999999997 3456799999999999999999998542 23679999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ ++++||++.++++++..+...+.||+|.
T Consensus 92 ~d~~~-----------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS-----------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc-----------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 5889999999999999888789999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-15 Score=167.59 Aligned_cols=184 Identities=17% Similarity=0.277 Sum_probs=149.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHHHHHHHHHHHcChh--hHHHHHHHHHHHHhhcccc-cCCCC
Q 001521 851 MRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWFPDL--IVPTLAFYVFVIGVWNYRF-RKRDP 927 (1061)
Q Consensus 851 ~~~~~~N~~Rl~~~~~~~~~~~~~i~~l~~W~~P~~T~~~~~~~~~~~~~p~l--~~p~~~~~l~~~~~~~~~~-~~~~~ 927 (1061)
..-+-+|+.-|++++.|+..+..+++.+.+|++|.+|+.|++++.+++|..|+ ++|.++++++++|+|.+.. +.+.+
T Consensus 482 veGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g~~ 561 (683)
T PF04842_consen 482 VEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLGKS 561 (683)
T ss_pred hcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 34466899999999999999999999999999999999999999999998777 4999999999999997654 32221
Q ss_pred CCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHH
Q 001521 928 LPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQALVTWRDPRATGIFVG 1007 (1061)
Q Consensus 928 ~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va~~~E~~~nl~~w~~P~~t~~~~~ 1007 (1061)
. ++...+.|+.++. ++++-++|+...++++.|+.++.++.|+|.++.|..|.+|..+++
T Consensus 562 ~------------------~~v~V~~pP~~nT---vEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~ 620 (683)
T PF04842_consen 562 F------------------GEVTVRDPPPKNT---VEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVAL 620 (683)
T ss_pred c------------------ceEEecCCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 1 2222333333443 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhc-CCcccCCCC----ChhhHHhhcCCC
Q 001521 1008 LCFVVAMILYLVPSKMVAMAFGFYYLR-HPMFRDRMP----SPALNFFRRLPS 1055 (1061)
Q Consensus 1008 ~l~~~~~vl~~iP~r~i~l~~g~~~l~-~P~~~~~~p----~~~~~~~~r~Ps 1055 (1061)
+++++++++.++|+||++++..+..|. +=.+|...- ..+..||-++|.
T Consensus 621 ~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 621 ALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 999999999999999999998887643 222444210 223466777774
|
|
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=139.80 Aligned_cols=102 Identities=21% Similarity=0.357 Sum_probs=87.8
Q ss_pred ceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
.|.|.|+|++|+||+++ | ..|.+||||.+.+.+ ...+|++++++.||.|||.|.|.+... ...|.|.|
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v 89 (123)
T cd08521 13 TGSLEVHIKECRNLAYA---DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV 89 (123)
T ss_pred CCEEEEEEEEecCCCCc---CCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence 57899999999999875 6 678999999998632 346999999999999999999998742 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
||++..+ ++++||++.++|+++..+...+.||+|
T Consensus 90 ~d~~~~~-----------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 90 WHHDRFG-----------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EeCCCCc-----------CCceeeEEEEecccccccCCCccEEEC
Confidence 9998775 588999999999999777667899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=138.95 Aligned_cols=105 Identities=20% Similarity=0.396 Sum_probs=88.7
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~~ 82 (1061)
...|+|+|++|++|. .|.+||||++++++++++|+++++++||.|||+|.|.+..... ..+..|.|+|||++.+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~- 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL- 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-
Confidence 467999999999997 5789999999999999999999999999999999999865431 1136799999999998
Q ss_pred CCCCCceeEEEEEECccceecCc--eeeEEEeccc
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGE--EALIYYPLEK 115 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~ 115 (1061)
++|++||++.+++.++..... ....|++|..
T Consensus 78 --~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 --RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred --ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 579999999999999765432 2568999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=139.45 Aligned_cols=99 Identities=25% Similarity=0.352 Sum_probs=85.6
Q ss_pred eEEEEEEEeecCCCCCcccCCC-CCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEec----CCcEEEEEEEe
Q 001521 645 GTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGVFD 716 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~v~d 716 (1061)
|.|+|+|++|++|+++ |.. |.+||||++++. ....+|+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~---d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA---DFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc---cCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999875 776 899999999974 345699999999999999999998874 35789999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ +|++||++.++++++... ..|+++.
T Consensus 78 ~d~~~-----------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99876 588999999999999743 4788875
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=139.43 Aligned_cols=104 Identities=26% Similarity=0.397 Sum_probs=91.3
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... +.|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~~-- 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEKV-- 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCCC--
Confidence 68999999999999999899999999999977 5789999999999999999999987653 7899999999998
Q ss_pred CCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
++|++||++.+++.++..... ..||.|.+.+
T Consensus 75 -~~d~~IG~~~~~l~~l~~~~~--~~~~~~~~~~ 105 (120)
T cd04045 75 -GKDRSLGSVEINVSDLIKKNE--DGKYVEYDDE 105 (120)
T ss_pred -CCCCeeeEEEEeHHHhhCCCC--CceEEecCCC
Confidence 679999999999999877633 4588776543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=140.10 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=81.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
+.+.|+|+|++|++|. .+..|.+||||+|.+++++++|+++++++||+|||+|.|....... ...|.|+|||++.+
T Consensus 26 ~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~--~~~L~v~V~D~d~~- 101 (127)
T cd04032 26 GLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSP--GGKLRFEVWDRDNG- 101 (127)
T ss_pred CcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCC--CCEEEEEEEeCCCC-
Confidence 3489999999999997 4667899999999999999999999999999999999997543321 57899999999998
Q ss_pred CCCCCceeEEEEEECccce
Q 001521 83 PTTRNNFLGRIRLSSSQFV 101 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~ 101 (1061)
++|++||++.+++....
T Consensus 102 --s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 102 --WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred --CCCCeeEEEEEEecCCc
Confidence 68999999999999754
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.6e-15 Score=141.20 Aligned_cols=106 Identities=28% Similarity=0.516 Sum_probs=90.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||+..+ ..+.+||||++.+.. .+++|+++++++||.|||+|.|.+...... ...|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEE
Confidence 4689999999999999988 788999999998831 468999999999999999999998764321 468999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
|++.+ +++++||++.+++.++. .+.....||+|
T Consensus 91 d~~~~---~~~~~iG~~~i~l~~l~-~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRF---GRNTFLGEVEIPLDSWD-LDSQQSEWYPL 123 (123)
T ss_pred eCCCC---cCCceeeEEEEeccccc-ccCCCccEEEC
Confidence 99988 67999999999999974 34445789986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-15 Score=141.27 Aligned_cols=109 Identities=28% Similarity=0.437 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+. ..+++|+++++++||+|||+|.|.+..... ....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l-~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL-KRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh-cCCEEEEEEEE
Confidence 458999999999999999988999999999994 368899999999999999999999875432 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 114 (1061)
++.+.. +++++||++.+++.++.. +.....||+|.
T Consensus 93 ~~~~~~-~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFLS-REKKLLGQVLIDLSDLDL-SKGFTQWYDLT 127 (127)
T ss_pred CCcccC-CCCceEEEEEEecccccc-cCCccceEECc
Confidence 987521 468999999999999744 34456899874
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=138.74 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=102.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 722 (1061)
...|.|.|++|++|+++ .+|||.+.+++..+ ||+++.++.||.|+|.|.|+...+...|+|.||+.+...+
T Consensus 10 ~~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 10 ENSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence 35799999999999874 37999999999986 9999999999999999999877777889999987654321
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCC-------CccccEEEEEEEEEec
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG-------MTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------~~~~G~i~l~~~f~~~ 782 (1061)
. ..++.+||++.||+.++..+...+.||||.....+. .+..|+|+++++|...
T Consensus 82 ----~---~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 ----K---KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ----c---ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 0 025889999999999999998889999999775443 2334799999999854
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=139.62 Aligned_cols=122 Identities=15% Similarity=0.279 Sum_probs=99.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE-EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCC-C
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAY-G 82 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~-~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~-~ 82 (1061)
..|.|.|++|++|++++ +|||.|.+++++ .||+++.++.||.|+|+|+|...... ..|.|.||+.+.. +
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~----~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPV----SVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcc----cEEEEEEEEccCccc
Confidence 46899999999998865 899999999976 69999999999999999999765543 6799999876543 1
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCC--------eeeeEEEEEEEEEeCC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS--------WIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~~~ 136 (1061)
...++++||.+.|++.++. .+...+.||+|....... ...+.|++++.|.+..
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 1025789999999999976 566678999998865443 4457999999998753
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=138.60 Aligned_cols=115 Identities=23% Similarity=0.299 Sum_probs=99.1
Q ss_pred EEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEEeCCCCCCCCCCC
Q 001521 651 VIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDSWGIFEGENGS 727 (1061)
Q Consensus 651 v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~ 727 (1061)
|++|++|+. ..|++||||++.+++...+|++++++.||.|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 789999964 578899999999999999999999999999999999999754 589999999998876
Q ss_pred CCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 728 METTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 728 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+|++||++.++|+++..+.....|++|..... ....|+|++++.|.+..
T Consensus 71 -----~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 -----RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RPTGATISLEVSYQPPD 119 (127)
T ss_pred -----CCceEEEEEEEhhHcccCCceEEEEeCcCCCC--CcccEEEEEEEEEeCCC
Confidence 58899999999999998887788999975432 22248999999998653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=137.67 Aligned_cols=115 Identities=27% Similarity=0.423 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|+.. |.+||||.+.++++ .++|+++++ +||.|||+|.|.+..... ....|.|.+||.+.. .
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~-~~~~l~i~v~d~~~~---~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDV-TFFTLSFYNKDKRSK---D 73 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccc-cEEEEEEEEEecccC---C
Confidence 78999999999876 78999999999884 589999988 999999999999987432 135788889998876 4
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
++.++|.+.+.... . +.....||+|.+........|+|++++.|
T Consensus 74 ~~~~~g~v~l~~~~--~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGKVALSKLD--L-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEEEEecCcC--C-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 56677776555433 2 44456899999876556679999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=138.74 Aligned_cols=91 Identities=30% Similarity=0.486 Sum_probs=84.0
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
+|.|+|+|++|++|+.. |. +.+||||+++++++..+|+++++++||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~---d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR---DF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCC---CC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 58999999999999864 65 7899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
+|++||++.+++..+..
T Consensus 75 ---------~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 75 ---------KDDSMGEAEIDLEPLVE 91 (145)
T ss_pred ---------CCCEEEEEEEEHHHhhh
Confidence 58999999999988754
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-15 Score=142.81 Aligned_cols=106 Identities=22% Similarity=0.451 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeEEEeeccCCCCCCeeeceeEEeecCCC------------CCCCCe
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYY----GQRRKTHTAVRDLNPTWNEALEFNVGKPP------------QVFTDM 70 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~------------~~~~~~ 70 (1061)
|+|+|++|+||+.+ ..|.+||||++.++ +..++|+++.++.||.|||+|.|.+.... ......
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 68999999999988 78999999999998 68899999999999999999999988752 112578
Q ss_pred EEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 71 FELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 71 L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
|.|+|||++.. ++++|||++.+++.++...+ ....||+|.+++
T Consensus 80 l~i~V~d~~~~---~~~~~IG~~~i~l~~l~~~~-~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV---SGDDFLGEVRIPLQGLQQAG-SHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC---cCCcEEEEEEEehhhccCCC-cccceEecCCcC
Confidence 99999999988 57999999999999976433 356899999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=137.14 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=97.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
-.|.|+|.+|+ |...+..+.+||||++.++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~-- 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTL-- 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCC--
Confidence 46899999999 555555889999999999887 8999999999999999999999864 46899999999998
Q ss_pred CCCCceeEEEEEECccceecCc--e--eeEEEeccccCC-CCeeeeEEEEEE
Q 001521 84 TTRNNFLGRIRLSSSQFVKKGE--E--ALIYYPLEKKSL-LSWIQGEVGLKI 130 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~~~~~--~--~~~w~~L~~~~~-~~~~~G~l~l~~ 130 (1061)
+++++||++.+++.++..... . ...|++|...+. .+...|+|.+++
T Consensus 74 -~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 -KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 679999999999999765432 1 235898876553 456789999875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=138.96 Aligned_cols=108 Identities=18% Similarity=0.374 Sum_probs=91.1
Q ss_pred CCcEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEC---CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 3 AIQKLIVEVVDARNLLPKD-GHGTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d-~~g~~dPyv~v~~~---~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..+.|.|+|++|+||+.++ ..+.+||||++.+. ...++|+++++++||+|||+|.|.+...... ...|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEEC
Confidence 4678999999999999998 68899999999983 3678999999999999999999998764321 35799999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
+.. +++++||++.++|.++... .....|++|.+
T Consensus 91 ~~~---~~~~~iG~~~i~L~~l~~~-~~~~~w~~L~~ 123 (123)
T cd08390 91 DRF---SRHCIIGHVLFPLKDLDLV-KGGVVWRDLEP 123 (123)
T ss_pred CcC---CCCcEEEEEEEeccceecC-CCceEEEeCCC
Confidence 988 5789999999999996543 34568999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-14 Score=136.52 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=87.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEE-Eec---CCcEEEEEEEe
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWK-VYD---PCTVLALGVFD 716 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~-v~~---~~~~l~i~v~d 716 (1061)
.+.|.|+|++|+||+++ |..|.+||||.+.+. .++.||+++++ +||+|||.|.|+ +.. ....|.+.|||
T Consensus 15 ~~~L~V~Vi~a~nL~~~---~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~ 90 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK---DRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYG 90 (124)
T ss_pred CCEEEEEEEEecCCCch---hcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEE
Confidence 46899999999999885 778899999987742 34569999888 999999999998 542 34789999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
++..+ ++++||++.|+|+++..+.....||+|.
T Consensus 91 ~~~~~-----------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 91 VERMR-----------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCcc-----------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 99876 5889999999999998888889999985
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=136.57 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=89.5
Q ss_pred CceEEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeC---CeEEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYA---SKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~---~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
..+.|.|.|++|++|+++ | ..|.+||||.+++. ....+|+++++++||.|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~---~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPR---TKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCc---cCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 357899999999999875 6 57889999999963 3446999999999999999999998743 368999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS-----------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC-----------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 998765 5889999999999998887778999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=137.41 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=87.7
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--C----eEEEecccCCCCCCccccEEEEEEec---CCcEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--S----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALG 713 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~ 713 (1061)
..+.|.|+|++|+||.++ |..|.+||||.+++- . .+.||+++++++||+|||.|.|++.. ....|.|+
T Consensus 12 ~~~~L~V~V~~arnL~~~---~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~ 88 (124)
T cd08680 12 GDSSLVISVEQLRNLSAL---SIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD 88 (124)
T ss_pred CCCEEEEEEeEecCCccc---ccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence 457999999999999886 778899999999942 2 36799999999999999999999874 34789999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc-EEeeEEec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK-VYRNTYPL 759 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 759 (1061)
|||++..+ ++++||.+.|+|+++.... ...+||+|
T Consensus 89 V~~~~~~~-----------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQ-----------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEeCCCCC-----------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 99998765 5889999999999996543 46789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=136.56 Aligned_cols=118 Identities=15% Similarity=0.219 Sum_probs=99.8
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECC---eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CC
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGF---QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KG 565 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~ 565 (1061)
.|+|+|++|++|+.. +.++.+||||++.+++ ...||+++. ++.||.|||+|.|.+.......|.|+|||++. ++
T Consensus 2 ~~~V~v~~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~ 79 (126)
T cd04043 2 LFTIRIVRAENLKAD-SSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGK 79 (126)
T ss_pred EEEEEEEEeECCCCC-CCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCC
Confidence 389999999999998 8889999999999863 467999988 89999999999999887656789999999988 78
Q ss_pred CceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeCC
Q 001521 566 SVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGG 618 (1061)
Q Consensus 566 d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~ 618 (1061)
+++||++.++|+.+.... .......|++|.+ .|++++++.+.+.
T Consensus 80 ~~~iG~~~i~l~~~~~~~-~~~~~~~w~~l~~--------~g~i~l~~~~~~~ 123 (126)
T cd04043 80 HDLCGRASLKLDPKRFGD-DGLPREIWLDLDT--------QGRLLLRVSMEGE 123 (126)
T ss_pred CceEEEEEEecCHHHcCC-CCCCceEEEEcCC--------CCeEEEEEEEeee
Confidence 999999999999765321 1334678999975 5999999988653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=135.94 Aligned_cols=101 Identities=21% Similarity=0.373 Sum_probs=87.7
Q ss_pred CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccc
Q 001521 22 GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQF 100 (1061)
Q Consensus 22 ~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l 100 (1061)
..|.+||||++.+++ ..++|+++++++||.|||+|.|.+.+.. .+.|.|.|||++.+ +|++||++.++|.++
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~----~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR----HDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC----CCCeEEEEEecHHHH
Confidence 478999999999988 4689999999999999999999998764 57899999999987 489999999999998
Q ss_pred eecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 101 VKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 101 ~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
...+.....||+|.+. ..|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 6655556789999853 3899999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=137.70 Aligned_cols=119 Identities=24% Similarity=0.373 Sum_probs=93.6
Q ss_pred EEEEEEeecC--CCCCcccCCCCCCCcEEEEEe-----CCeEEEecccCCCCCCccccEEEEEEecC---------CcEE
Q 001521 647 VELGVIGCKN--LLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYDP---------CTVL 710 (1061)
Q Consensus 647 l~v~v~~a~~--L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~~~P~wne~~~~~v~~~---------~~~l 710 (1061)
..++|..|++ |++. +..+.+||||.+++ +.+..||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 4556666666 6553 77889999999985 34577999999999999999999999654 2569
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEe
Q 001521 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 711 ~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~ 781 (1061)
.|+|||++.+. .+|++||++.++|+.+..+.....|++|... .....|.|+++++...
T Consensus 81 ~~~V~d~~~f~----------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 81 KFEVYHKGGFL----------RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEEeCCCcc----------cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEecC
Confidence 99999998864 1599999999999999877666789998632 1122389999998863
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=141.73 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=87.7
Q ss_pred EEEEEEEeecCCCCCccc-----------CCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecC--CcEEEE
Q 001521 646 TVELGVIGCKNLLPMKTV-----------NGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLAL 712 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~-----------d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i 712 (1061)
.|.|+|++|++|++++.. +..+.+||||++.++++..||+++++++||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 378999999999987311 1235799999999999999999999999999999999998644 479999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-------EeeEEeceec
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKV-------YRNTYPLLLL 762 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~~ 762 (1061)
+|||++..+ +|++||++.|+++++..... -.+|+.|...
T Consensus 81 ~v~D~d~~~-----------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 81 QIRDWDRVG-----------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEECCCCC-----------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999876 58999999999999865442 2477777643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-14 Score=136.62 Aligned_cols=96 Identities=20% Similarity=0.310 Sum_probs=84.8
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEec--CCcEEEEEEEeCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYD--PCTVLALGVFDSW 718 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~--~~~~l~i~v~d~~ 718 (1061)
+..+|.|+|+|++|++|.. |..|.+||||+|+++++..||+++++++||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4668999999999999963 677899999999999998999999999999999999998543 4689999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
..+ +|++||++.++|.....+.
T Consensus 100 ~~s-----------~dd~IG~~~i~l~~~~~~~ 121 (127)
T cd04032 100 NGW-----------DDDLLGTCSVVPEAGVHED 121 (127)
T ss_pred CCC-----------CCCeeEEEEEEecCCceee
Confidence 876 5999999999999876543
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=135.56 Aligned_cols=112 Identities=28% Similarity=0.430 Sum_probs=94.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|+|+|++|++|...+..|.+||||++.+++ ..++|+++.+++||.|||+|.|.+.... .+.|.|+|||++.. +
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~---~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRG---G 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCC---C
Confidence 589999999999998889999999999976 5689999999999999999999998654 57899999999988 6
Q ss_pred CCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEE
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVG 127 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~ 127 (1061)
++++||++.+++.++.. +.....|++|.+++ ....|.|.
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g--~~~~~~~~ 113 (115)
T cd04040 75 KDDLLGSAYIDLSDLEP-EETTELTLPLDGQG--GGKLGAVF 113 (115)
T ss_pred CCCceEEEEEEHHHcCC-CCcEEEEEECcCCC--CccCceEE
Confidence 79999999999999654 44467899998754 23456554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=142.17 Aligned_cols=100 Identities=29% Similarity=0.527 Sum_probs=86.3
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----------------------------eEEEeeccCCCCCCee
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----------------------------QRRKTHTAVRDLNPTW 52 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----------------------------~~~~T~~~~~tlnP~W 52 (1061)
...+.|.|+|++|+||.++|..|.+||||+|.+.. ..++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 45689999999999999999999999999999853 2378999999999999
Q ss_pred eceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEec
Q 001521 53 NEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 53 ~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
||+|.|.+.... ...|.|+|||++ ++|||++.+++.++... ..+.||+|
T Consensus 105 nE~F~f~v~~~~---~~~L~i~V~D~d-------d~~IG~v~i~l~~l~~~--~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVS---NDQLHLDIWDHD-------DDFLGCVNIPLKDLPSC--GLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCC---CCEEEEEEEecC-------CCeEEEEEEEHHHhCCC--CCCCeEeC
Confidence 999999997654 478999999987 47999999999997633 35789986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=138.62 Aligned_cols=113 Identities=22% Similarity=0.298 Sum_probs=94.8
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccC-CCCCCccccEEEEEEecC-----CcEEEEEEEeCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVS-DSLEPRWNEQYTWKVYDP-----CTVLALGVFDSW 718 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~-~~~~P~wne~~~~~v~~~-----~~~l~i~v~d~~ 718 (1061)
.|+|+|++|++|+.. +..+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~---~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNV---NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCC---CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 389999999999874 6788999999999988 788999986 589999999999999877 589999999998
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-----EeeEEeceecCCCCCccccEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKV-----YRNTYPLLLLGSNGMTKMGEIEV 775 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~i~l 775 (1061)
..+ +|++||++.|+|.++..+.. ...||+|.... |.. .|.|++
T Consensus 78 ~~~-----------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~-~G~~~~ 125 (125)
T cd04051 78 PSL-----------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKP-QGVLNF 125 (125)
T ss_pred CCC-----------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCc-CeEEeC
Confidence 765 58899999999999976543 36899998643 433 388864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=140.19 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 3 AIQKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
..+.|.|.|++|+||..++. .+.+||||+|.+.. .+++|+++++++||+|||+|.|.+..... .+..|.|+|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L-~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELL-AASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHh-CccEEEEEE
Confidence 56889999999999999983 35699999999843 36799999999999999999999886542 256899999
Q ss_pred eeCCCCCCCCCCceeEEEEEECcc
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
||+|.+ +++++||++.+.+..
T Consensus 92 ~d~d~~---~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQDSP---GQSLPLGRCSLGLHT 112 (138)
T ss_pred EeCCCC---cCcceeceEEecCcC
Confidence 999998 689999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=142.36 Aligned_cols=105 Identities=22% Similarity=0.294 Sum_probs=88.9
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEec----CCcEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLAL 712 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i 712 (1061)
...|.|+|+|++|+||++. |..|.+||||.+.+. ....||+++++++||.|||.|.|.+.. ....|.|
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~---d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 24 PSTGELHVWVKEAKNLPAL---KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred CCCceEEEEEEeeeCCCCC---CCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 4579999999999999885 778899999999862 345699999999999999999998642 2358999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEece
Q 001521 713 GVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 713 ~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
+|||++..+ +|++||++.++++++........|+.+.
T Consensus 101 ~V~d~d~~~-----------~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 101 TVWDHDKLS-----------SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred EEEeCCCCC-----------CCceEEEEEEeCCccccCCCccccccCC
Confidence 999999875 5899999999999997665557888774
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-15 Score=141.37 Aligned_cols=102 Identities=23% Similarity=0.207 Sum_probs=84.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
.+.|.|+|++|+||+++ |..|.+||||.+++.+ + +.||+++++++||+|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~A~nL~~~---~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~ 90 (136)
T cd08406 14 AERLTVVVVKARNLVWD---NGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVA 90 (136)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEE
Confidence 46899999999999885 7789999999999632 2 4489999999999999999999874 3478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.|..... +...++|+.+..
T Consensus 91 ~~d~~~-----------~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 91 ESTEDG-----------KTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred eCCCCC-----------CCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 999876 588999999987754 344478877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-14 Score=136.37 Aligned_cols=124 Identities=16% Similarity=0.224 Sum_probs=96.1
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE----C-CeEEEeeccCCCCCCeeeceeEEeecCCC-----CCCCCeEEEE
Q 001521 7 LIVEVVDARN--LLPKDGHGTSSPYVVIDY----Y-GQRRKTHTAVRDLNPTWNEALEFNVGKPP-----QVFTDMFELN 74 (1061)
Q Consensus 7 L~V~v~~a~~--L~~~d~~g~~dPyv~v~~----~-~~~~~T~~~~~tlnP~W~e~f~f~v~~~~-----~~~~~~L~v~ 74 (1061)
..++|..|++ |++.+..+.+||||++.+ . .+++||+++++|+||+|||+|.|.+.... ......|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 778887889999999997 2 27999999999999999999999996542 1114579999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|||++.+. ++|++||++.++|..+.... ....|++|... .....|+|++++.....
T Consensus 84 V~d~~~f~--~~D~~iG~~~i~L~~l~~~~-~~~~~~~L~~~--~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFL--RSDKLLGTAQVKLEPLETKC-EIHESVDLMDG--RKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcc--cCCCeeEEEEEEcccccccC-cceEEEEhhhC--CCCcCCEEEEEEEecCC
Confidence 99999862 46999999999999964443 34469998742 22468999999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-14 Score=136.75 Aligned_cols=103 Identities=26% Similarity=0.354 Sum_probs=91.8
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCC-CCCCccccEEEEEEecC----CcEEEEEEEeCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDP----CTVLALGVFDSWG 719 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~----~~~l~i~v~d~~~ 719 (1061)
|.|+|+|++|++|+.+ +..+.+||||++++++...+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT---DFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC---CCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 7899999999999875 77789999999999998889999885 89999999999999876 5789999999988
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.+ +|++||++.+++.++..+...+.||+|..
T Consensus 78 ~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS-----------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC-----------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 58899999999999987666688999865
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-14 Score=167.93 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=93.6
Q ss_pred CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEc
Q 001521 666 KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744 (1061)
Q Consensus 666 ~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l 744 (1061)
.++|||||+|.++++++ ||+++++++||+|||.|.|.+.++.+.|+|+|||+|.++ +++||++.|||
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------------aD~IG~a~IPL 141 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------------AQIIGTAKIPV 141 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------------CceeEEEEEEH
Confidence 45789999999998755 999999999999999999999998899999999999986 57999999999
Q ss_pred ccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 745 ~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
.++..|...+.|++|.....+..+..|.|++++.|.+-
T Consensus 142 ~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 142 RDIASGERISGWFPVLGASGKPPKAETAIFIDMKFTPF 179 (868)
T ss_pred HHcCCCCceEEEEEccccCCCCCCCCcEEEEEEEEEEc
Confidence 99999998899999988765545555899999999864
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=138.96 Aligned_cols=93 Identities=26% Similarity=0.407 Sum_probs=80.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.... ..+..|.|+|||
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~-l~~~~l~~~V~~ 91 (136)
T cd08406 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV-LQDLSLRVTVAE 91 (136)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH-hCCcEEEEEEEe
Confidence 457899999999999999989999999999993 2 3678999999999999999999987643 225789999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
+|.+ +++++||++.+....
T Consensus 92 ~d~~---~~~~~iG~v~lg~~~ 110 (136)
T cd08406 92 STED---GKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCC---CCCCeeEEEEECCCC
Confidence 9998 689999999997653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=132.87 Aligned_cols=93 Identities=23% Similarity=0.416 Sum_probs=80.7
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCC-CCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDL-NPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tl-nP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
...++|.|.|++|+||++.+..+.+||||+|++- + .++||+++++|+ ||.|||+|.|.+..... +..|.|+|
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v 88 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKL 88 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh--eeEEEEEE
Confidence 4678999999999999988667788999999982 2 588999999996 69999999999987542 57899999
Q ss_pred eeCCCCCCCCCCceeEEEEEECcc
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
||++.. +++++||++.+....
T Consensus 89 ~d~~~~---~~n~~IG~v~lG~~~ 109 (135)
T cd08692 89 YSRSSV---RRKHFLGQVWISSDS 109 (135)
T ss_pred EeCCCC---cCCceEEEEEECCcc
Confidence 999988 789999999999876
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-14 Score=137.31 Aligned_cols=107 Identities=32% Similarity=0.574 Sum_probs=92.8
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
.+.|+|+|++|+||+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+..... ...|.|+|||+
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~--~~~l~v~v~d~ 89 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK--DRRLSIEVWDW 89 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc--CCEEEEEEEEC
Confidence 478999999999999988889999999999953 68999999999999999999999876532 47899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
+.. +++++||++.+++.++... ....||+|.+..
T Consensus 90 ~~~---~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 90 DRT---TRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CCC---CCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 988 5799999999999997644 455799987754
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=133.21 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=91.0
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
|.|+|+|++|++|... |..|.+||||++.++++ ..+|++++++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~---d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNL---EGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCc---cCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 7899999999999874 77889999999999874 56999999999999999999999888889999999999876
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+|++||++.+++.++..+. .+.||-|...+
T Consensus 76 ---------~d~~IG~~~~~l~~l~~~~-~~~~~~~~~~~ 105 (120)
T cd04045 76 ---------KDRSLGSVEINVSDLIKKN-EDGKYVEYDDE 105 (120)
T ss_pred ---------CCCeeeEEEEeHHHhhCCC-CCceEEecCCC
Confidence 5889999999999998764 37788876543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.4e-14 Score=137.24 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=90.8
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeC----CeEEEecccCCCCCCccccEEEEEEecC----------------
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA----SKWIRTRTVSDSLEPRWNEQYTWKVYDP---------------- 706 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~----~~~~rT~~~~~~~~P~wne~~~~~v~~~---------------- 706 (1061)
|+|.|++|++|..+ ..|.+||||.++++ +...+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~----~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK----SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc----cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57999999999762 46789999999988 6678999999999999999999999864
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCC
Q 001521 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNG 766 (1061)
Q Consensus 707 ~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 766 (1061)
...|.|+|||++..+ ++++||++.|++.++........||+|......+
T Consensus 77 ~~~l~i~V~d~~~~~-----------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~~ 125 (137)
T cd08675 77 KSELRVELWHASMVS-----------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAPG 125 (137)
T ss_pred ccEEEEEEEcCCcCc-----------CCcEEEEEEEehhhccCCCcccceEecCCcCCCC
Confidence 468999999999875 5889999999999998766678999998875433
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-14 Score=134.19 Aligned_cols=90 Identities=23% Similarity=0.429 Sum_probs=80.8
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeE--EEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR--RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~--~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
+|+|.|++|++|...+..|++||||++.++++. .+|+++++++||.|||+|.|.+.... ...|.|+|||++.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~-- 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLL-- 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCC--
Confidence 589999999999999999999999999998854 57888999999999999999987654 47899999999998
Q ss_pred CCCCceeEEEEEECccce
Q 001521 84 TTRNNFLGRIRLSSSQFV 101 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l~ 101 (1061)
++|++||++.+++++..
T Consensus 76 -~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 76 -GSDDLIGETVIDLEDRF 92 (124)
T ss_pred -CCCceeEEEEEeecccc
Confidence 67999999999999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-14 Score=137.99 Aligned_cols=100 Identities=26% Similarity=0.401 Sum_probs=86.6
Q ss_pred CCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-----------------------------EEEecccCCCC
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-----------------------------WIRTRTVSDSL 691 (1061)
Q Consensus 641 ~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-----------------------------~~rT~~~~~~~ 691 (1061)
.++.+.|+|+|++|+||.++ |..|.+||||.+.+++. ..+|+++.+++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 47899999999999999885 88899999999997532 25899999999
Q ss_pred CCccccEEEEEEecC-CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEec
Q 001521 692 EPRWNEQYTWKVYDP-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759 (1061)
Q Consensus 692 ~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 759 (1061)
||.|||.|.|.+.+. ...|.|+|||++ |++||++.++++++... ...+||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d---------------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD---------------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC---------------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999999999864 478999999985 45999999999999843 35899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=134.61 Aligned_cols=92 Identities=16% Similarity=0.274 Sum_probs=80.4
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-------CeEEEecccCCCCCCccccEEEEEEecC-----CcEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-------SKWIRTRTVSDSLEPRWNEQYTWKVYDP-----CTVLA 711 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-------~~~~rT~~~~~~~~P~wne~~~~~v~~~-----~~~l~ 711 (1061)
.+.|+|+|++|++|+++ |..|.+||||++++. ....||+++++|+||+|||.|.|++... ...|.
T Consensus 15 ~~~L~V~Vi~A~~L~~~---~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~ 91 (133)
T cd04009 15 EQSLRVEILNARNLLPL---DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL 91 (133)
T ss_pred CCEEEEEEEEeeCCCCc---CCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence 46899999999999875 778899999999975 2456999999999999999999998752 46899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC
Q 001521 712 LGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 712 i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
|+|||++..+ +|++||++.++|+++..
T Consensus 92 ~~V~d~d~~~-----------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 92 FTVKDYDLLG-----------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEecCCCC-----------CCcEeEEEEEeHHHCCc
Confidence 9999999876 58899999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-14 Score=137.09 Aligned_cols=104 Identities=17% Similarity=0.184 Sum_probs=83.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC--e---EEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS--K---WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~--~---~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.|+|.|.|++|+||.+++. +..+.+||||++.+.+ + +.||+++++++||+|||.|.|.+... ...|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~-~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQL-KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCcccc-CCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence 5789999999999998621 1234599999999544 2 34899999999999999999999842 477999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.+++... |...++|..+..
T Consensus 93 d~d~~~-----------~~d~iG~v~lg~~~~--g~~~~hW~~ml~ 125 (138)
T cd08407 93 NQDSPG-----------QSLPLGRCSLGLHTS--GTERQHWEEMLD 125 (138)
T ss_pred eCCCCc-----------CcceeceEEecCcCC--CcHHHHHHHHHh
Confidence 999876 588999999999863 444477777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-14 Score=136.61 Aligned_cols=107 Identities=27% Similarity=0.401 Sum_probs=87.1
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
...+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+..... ....|.|+||
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l-~~~~l~~~v~ 90 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI-QKVHLIVTVL 90 (136)
T ss_pred CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh-CCCEEEEEEE
Confidence 3568999999999999999999999999999994 2 46789999999999999999999865431 1357999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
|++.+ ++|++||++.+++... +.....|+++..
T Consensus 91 d~~~~---~~~~~iG~~~i~~~~~---~~~~~~W~~~~~ 123 (136)
T cd08402 91 DYDRI---GKNDPIGKVVLGCNAT---GAELRHWSDMLA 123 (136)
T ss_pred eCCCC---CCCceeEEEEECCccC---ChHHHHHHHHHh
Confidence 99998 6799999999999762 222334666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-14 Score=139.59 Aligned_cols=106 Identities=24% Similarity=0.421 Sum_probs=88.8
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..|.+||||++.+.. .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l-~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDL-AKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHh-CCCEEEEEEEe
Confidence 4689999999999999999889999999999942 47899999999999999999999876431 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.. +++++||++.+++.. .++....|+.+..
T Consensus 90 ~d~~---~~~~~lG~~~i~l~~---~~~~~~~W~~~l~ 121 (133)
T cd08384 90 KDIG---KSNDYIGGLQLGINA---KGERLRHWLDCLK 121 (133)
T ss_pred CCCC---CCccEEEEEEEecCC---CCchHHHHHHHHh
Confidence 9988 679999999999985 2333456887654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-14 Score=137.20 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=85.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--Ce---EEEecccCCCCCCccccEEEEEEec---CCcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--SK---WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~~---~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~ 715 (1061)
.+.|.|+|++|++|+.+ |..|.+||||.+++. ++ ..||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~vi~a~~L~~~---d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 14 TNRLTVVVLKARHLPKM---DVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 46899999999999875 778999999999963 33 3489999999999999999999874 3467999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ ++++||++.+++... +....+|++|..
T Consensus 91 d~d~~~-----------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 91 DSDRVT-----------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred ECCCCC-----------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 999876 588999999999984 344588998854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-14 Score=135.65 Aligned_cols=97 Identities=30% Similarity=0.438 Sum_probs=84.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-------CeEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEE
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-------GQRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELN 74 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-------~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~ 74 (1061)
..+.|.|+|++|++|+..+..|.+||||+|.+. ..+++|+++++++||+|||+|.|.+..... .....|.|+
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 347899999999999999888999999999985 357899999999999999999999876321 114689999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECcccee
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
|||++.+ +++++||++.++|.++..
T Consensus 94 V~d~d~~---~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLL---GSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCC---CCCcEeEEEEEeHHHCCc
Confidence 9999998 679999999999999754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=129.99 Aligned_cols=111 Identities=27% Similarity=0.345 Sum_probs=93.6
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 724 (1061)
|+|+|++|++|+.. +..|.+||||++.+++.. .+|+++.++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSA---DRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCC---CCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 57999999999875 677899999999987644 699999999999999999999986 4588999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIE 774 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~ 774 (1061)
++++||++.+++.++..+.....|++|... |..+.|.+-
T Consensus 75 --------~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 --------KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred --------CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 588999999999999988888899999643 222336654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=130.20 Aligned_cols=112 Identities=25% Similarity=0.379 Sum_probs=88.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-EEecccCCCCCCccccEEEEEEec---CCcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-IRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~v~d~~~~~~ 722 (1061)
|+|+|++|+||+.. |.+||||+++++++. .+|+++++ .||.|||.|.|.+.. ....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999751 789999999999864 69999999 999999999999986 3367888888876543
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
.+.++|++.|.. +..+...+.||+|......+ +..|+|+|++.|
T Consensus 74 ----------~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----------RDIVIGKVALSK--LDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred ----------CeeEEEEEEecC--cCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 466777766554 44455668999998765433 345999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=133.12 Aligned_cols=104 Identities=26% Similarity=0.368 Sum_probs=89.0
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC--CcEEEEEEEeC
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALGVFDS 717 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i~v~d~ 717 (1061)
|.|+|+|++|++|+.. |..+.+||||.+.+.+ ...||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 5899999999999874 6778999999999753 456999999999999999999998753 47899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+..+ +|++||++.++|+++... ....||+|...+
T Consensus 90 ~~~~-----------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 90 DRTT-----------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CCCC-----------CcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 8765 588999999999999754 457899997554
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-14 Score=137.68 Aligned_cols=105 Identities=26% Similarity=0.310 Sum_probs=87.0
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--C---eEEEecccCCCCCCccccEEEEEEecC---CcEEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--S---KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALG 713 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~---~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~ 713 (1061)
+..|.|+|+|++|++|+.+ |..|.+||||.+.++ + ...+|+++++++||.|||.|.|++... ...|.|+
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 88 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT 88 (136)
T ss_pred CCCCeEEEEEEEeeCCCcc---cCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 3468999999999999875 778899999999974 2 245899999999999999999998733 2479999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|||++..+ +|++||++.|++... +...++|+++...
T Consensus 89 v~d~~~~~-----------~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 89 VLDYDRIG-----------KNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred EEeCCCCC-----------CCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 99999876 588999999999875 3445888888643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-13 Score=162.58 Aligned_cols=127 Identities=18% Similarity=0.297 Sum_probs=105.3
Q ss_pred CcEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEECCe-EEE
Q 001521 4 IQKLIVEVVDARNLLPKDG------------------------------------------HGTSSPYVVIDYYGQ-RRK 40 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~------------------------------------------~g~~dPyv~v~~~~~-~~~ 40 (1061)
.|.|.++|.+|++|+.+|. .+++||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3789999999999975221 347899999999875 569
Q ss_pred eeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCC-
Q 001521 41 THTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLL- 119 (1061)
Q Consensus 41 T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~- 119 (1061)
|+++++++||+|||+|.|.+.... ..|.|+|||+|.+ + +++||++.|++.++. .+...+.|++|.+....
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~----s~L~f~VkD~D~~---g-aD~IG~a~IPL~~L~-~Ge~vd~Wl~Ll~~~~kp 163 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPF----AYLEFQVKDDDVF---G-AQIIGTAKIPVRDIA-SGERISGWFPVLGASGKP 163 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCC----ceEEEEEEcCCcc---C-CceeEEEEEEHHHcC-CCCceEEEEEccccCCCC
Confidence 999999999999999999999854 6899999999999 3 689999999999964 45567789999875432
Q ss_pred CeeeeEEEEEEEEEeCCCCC
Q 001521 120 SWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 120 ~~~~G~l~l~~~~~~~~~~~ 139 (1061)
.+..|+|+++++|.+....+
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 34568999999999976654
|
|
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-14 Score=138.70 Aligned_cols=106 Identities=26% Similarity=0.437 Sum_probs=87.9
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..|.+||||++.+. + .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEE
Confidence 357899999999999999999999999999983 2 36789999999999999999999875432 14679999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.. . +.....|+.|..
T Consensus 92 ~d~~---~~~~~iG~~~~~~~~-~--~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRV---TKNEVIGRLVLGPKA-S--GSGGHHWKEVCN 123 (136)
T ss_pred CCCC---CCCccEEEEEECCcC-C--CchHHHHHHHHh
Confidence 9998 679999999999987 2 333446887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=133.62 Aligned_cols=108 Identities=22% Similarity=0.397 Sum_probs=85.9
Q ss_pred CCCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-C----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-G----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 2 ~~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-~----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
+..+.|.|+|++|+||...|..|.+||||++.+. + .+++|+++++++||.|||+|.|.+...... ...|.|+||
T Consensus 11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~ 89 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVY 89 (135)
T ss_pred CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEE
Confidence 3568999999999999999999999999999972 2 467999999999999999999998654321 347999999
Q ss_pred eCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
|+|.. +++++||++.+.... ..+.....|+.|..
T Consensus 90 d~d~~---~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~ 123 (135)
T cd08410 90 GHNVK---SSNDFIGRIVIGQYS--SGPSETNHWRRMLN 123 (135)
T ss_pred eCCCC---CCCcEEEEEEEcCcc--CCchHHHHHHHHHh
Confidence 99988 689999999876533 22222345766554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=129.81 Aligned_cols=117 Identities=20% Similarity=0.343 Sum_probs=97.5
Q ss_pred cEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeEEEeeccCCCC-CCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 5 QKLIVEVVDARNLLPKD--GHGTSSPYVVIDYY------GQRRKTHTAVRDL-NPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d--~~g~~dPyv~v~~~------~~~~~T~~~~~tl-nP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+.... ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 57999999999999887 57899999999993 4678999987775 9999999999998654 35799999
Q ss_pred eeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
||++.. ++++||++.+++.++. . +..|++|..........|.|.+.+++
T Consensus 79 ~d~~~~----~~~~iG~~~~~l~~l~-~---g~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG----DDDFLGQACLPLDSLR-Q---GYRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC----CCcEeEEEEEEhHHhc-C---ceEEEEecCCCCCCCcceeEEEEEEE
Confidence 999986 5899999999999973 2 34689998765544567999998875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-14 Score=135.54 Aligned_cols=102 Identities=23% Similarity=0.277 Sum_probs=84.9
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe--CCe---EEEecccCCCCCCccccEEEEEEec--C-CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY--ASK---WIRTRTVSDSLEPRWNEQYTWKVYD--P-CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~--~~~---~~rT~~~~~~~~P~wne~~~~~v~~--~-~~~l~i~v~ 715 (1061)
.|.|.|+|++|+||.++ |..|.+||||++.+ ++. ..||++++++.||.|||.|.|.+.. . ...|.|+||
T Consensus 14 ~~~L~v~vi~a~~L~~~---~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~ 90 (136)
T cd08405 14 ANRITVNIIKARNLKAM---DINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVM 90 (136)
T ss_pred CCeEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 57899999999999875 77889999999986 332 3589999999999999999999862 2 368999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|++..+ +|++||++.+++.+. +...++|+.+..
T Consensus 91 d~~~~~-----------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 91 DKDRLS-----------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred ECCCCC-----------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 999876 588999999999987 333477877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-14 Score=153.13 Aligned_cols=100 Identities=20% Similarity=0.289 Sum_probs=89.5
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEEC-----CeeeeeeeeecCCCCCcccceeEEeeccC-CCCeEEEEEEeccC-
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLG-----FQVQKTKVSVTRNGTPSWNEDLLFVAAEP-FTDQLSFTLENRQH- 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v~~~-~~~~L~i~V~D~d~- 563 (1061)
|+|+|.+|+||.+| |.+|.+||||++.|- ..+.||++++ .++||+|||+|.|.+... .+..|.|+|||||.
T Consensus 182 l~v~i~ea~NLiPM-DpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 182 LTVTIKEAKNLIPM-DPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred EEEEehhhcccccc-CCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccccc
Confidence 99999999999999 999999999999993 3678899998 999999999999987533 35589999999999
Q ss_pred CCCceeEEEEEeccccccccccccccceEEEccc
Q 001521 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 564 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
++++++|...+.+++|.+. ..+.||.|.+
T Consensus 260 sRNDFMGslSFgisEl~K~-----p~~GWyKlLs 288 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKA-----PVDGWYKLLS 288 (683)
T ss_pred ccccccceecccHHHHhhc-----chhhHHHHhh
Confidence 9999999999999999864 4688999876
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-14 Score=137.82 Aligned_cols=106 Identities=27% Similarity=0.420 Sum_probs=86.3
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+..|.+||||++.+ ++ .+++|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~-~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL-RETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh-CCCEEEEEEEE
Confidence 45899999999999999998999999999998 32 46799999999999999999999864321 13679999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
++.+ +++++||++.+++.+. +.....|+.+..
T Consensus 92 ~~~~---~~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDRL---SRNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCCC---CCCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 9998 6799999999999874 333334665443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=128.90 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-------------eEEEecccCCCCCCcc-ccEEEEEEecCCcEEE
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-------------KWIRTRTVSDSLEPRW-NEQYTWKVYDPCTVLA 711 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-------------~~~rT~~~~~~~~P~w-ne~~~~~v~~~~~~l~ 711 (1061)
...|.+++|++|. . |..|++||||.+.+.+ +..||+++++++||+| ||.|.|.+. ....|.
T Consensus 2 ~~~~~~~~A~~L~-~---~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-K---GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-C---ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 3578999999996 2 6789999999999742 3579999999999999 999999985 457899
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc---EEeeEEeceecCCCCCccccEEEEEE
Q 001521 712 LGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK---VYRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 712 i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
|+|||++..+. ...+++||++.|+++++..+. ....||+|..+...+.. .|+|.|.+
T Consensus 77 v~V~D~~~~~~--------~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v-~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKSR--------PIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHV-SGQLTFRF 136 (137)
T ss_pred EEEEecCCCCC--------ccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcE-EEEEEEEe
Confidence 99999765330 002789999999999997543 34678999876654443 39998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=132.85 Aligned_cols=93 Identities=18% Similarity=0.315 Sum_probs=81.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEe
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY---G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIF 76 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~---~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~ 76 (1061)
..+.|.|+|++|+||.+.+..|.+||||++.+. + .+++|+++++++||+|||+|.|.+..... .+..|.|+||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l-~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL-SEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh-CccEEEEEEE
Confidence 468999999999999999999999999999983 2 35799999999999999999999976432 2578999999
Q ss_pred eCCCCCCCCCCceeEEEEEECcc
Q 001521 77 HDKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 77 d~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
|++.+ +++++||++.+++..
T Consensus 92 ~~~~~---~~~~~iG~v~l~~~~ 111 (138)
T cd08408 92 NKRKM---KRKEMIGWFSLGLNS 111 (138)
T ss_pred ECCCC---CCCcEEEEEEECCcC
Confidence 99998 689999999998875
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=134.39 Aligned_cols=103 Identities=22% Similarity=0.285 Sum_probs=84.5
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC--Ce---EEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--SK---WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~~---~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
..|.|+|+|++|++|+++ |..|.+||||.+++. +. ..+|+++++++||.|||.|.|.+... ...|.|+|
T Consensus 12 ~~~~L~V~v~~A~~L~~~---d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v 88 (134)
T cd08403 12 TAGRLTLTIIKARNLKAM---DITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV 88 (134)
T ss_pred CCCEEEEEEEEeeCCCcc---ccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 468999999999999885 778999999999963 22 45899999999999999999998632 24699999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
||++..+ +|++||++.|++.....+ .++|+.+..
T Consensus 89 ~d~~~~~-----------~~~~IG~~~l~~~~~~~~--~~~w~~~~~ 122 (134)
T cd08403 89 VDYDRVG-----------HNELIGVCRVGPNADGQG--REHWNEMLA 122 (134)
T ss_pred EECCCCC-----------CCceeEEEEECCCCCCch--HHHHHHHHH
Confidence 9999876 588999999998854333 478887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.5e-13 Score=130.20 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=84.0
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-C-C---eEEEecccCCCCCCccccEEEEEEec--CC-cEEEEE
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-A-S---KWIRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALG 713 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-~-~---~~~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~ 713 (1061)
+..|.|.|+|++|++|+.+ |..|.+||||.+.+ . . ...+|+++++++||.|||.|.|.+.. .. ..|.|+
T Consensus 11 ~~~~~L~V~vi~a~~L~~~---d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 11 PSAGRLNVDIIRAKQLLQT---DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCCeEEEEEEEecCCCcc---cCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 3468999999999999875 77889999999996 2 2 23589999999999999999999863 22 479999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|||++..+ +|++||++.|........ ..++|+.|...
T Consensus 88 V~d~d~~~-----------~~~~iG~~~l~~~~~~~~-~~~~W~~l~~~ 124 (135)
T cd08410 88 VYGHNVKS-----------SNDFIGRIVIGQYSSGPS-ETNHWRRMLNS 124 (135)
T ss_pred EEeCCCCC-----------CCcEEEEEEEcCccCCch-HHHHHHHHHhC
Confidence 99998765 689999999776554432 23678877543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-13 Score=127.08 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCC
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 724 (1061)
.|+|+|++|+ |... +..+.+||||.++++++ ..+|+++++++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5442 55788999999999888 779999999999999999999985 4578999999999875
Q ss_pred CCCCCCCCCCcceEEEEEEcccccCCc---E--EeeEEeceecCCCCCccccEEEEEE
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLETGK---V--YRNTYPLLLLGSNGMTKMGEIEVAV 777 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~~~~~~G~i~l~~ 777 (1061)
.|++||++.++|+++..+. . ...|+++......+.+..|.|.+.+
T Consensus 75 --------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --------ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --------CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 5899999999999986432 1 2358888755421223459888764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=131.86 Aligned_cols=93 Identities=29% Similarity=0.454 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|+|+|++|++|++++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+...... ...|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~-~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD-NVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC-CCEEEEEEEE
Confidence 468999999999999999999999999999983 2 367999999999999999999998654321 3579999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
++.. +++++||++.+++..
T Consensus 91 ~~~~---~~~~~IG~~~l~~~~ 109 (134)
T cd08403 91 YDRV---GHNELIGVCRVGPNA 109 (134)
T ss_pred CCCC---CCCceeEEEEECCCC
Confidence 9998 679999999999773
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=129.12 Aligned_cols=99 Identities=20% Similarity=0.330 Sum_probs=83.3
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC--
Q 001521 10 EVVDARNLLPKDGHGTSSPYVVIDYYGQ-------RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA-- 80 (1061)
Q Consensus 10 ~v~~a~~L~~~d~~g~~dPyv~v~~~~~-------~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~-- 80 (1061)
-.++|++|...+..|++||||++.+.+. .++|+++++++||.|||+|.|.+.... .+.|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 3588999999999999999999999664 489999999999999999999876444 4789999999997
Q ss_pred --CCCCCCCceeEEEEEECccceecCceeeEEEeccc
Q 001521 81 --YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115 (1061)
Q Consensus 81 --~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 115 (1061)
. +++++||++.+++.+|.... ....|++|..
T Consensus 82 ~~~---~~~d~iG~~~i~l~~l~~~~-~~~~~~~l~~ 114 (120)
T cd04048 82 KDL---SDHDFLGEAECTLGEIVSSP-GQKLTLPLKG 114 (120)
T ss_pred CCC---CCCcEEEEEEEEHHHHhcCC-CcEEEEEccC
Confidence 6 57999999999999986543 3446888843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=134.07 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=86.9
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecC---CcEEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGV 714 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v 714 (1061)
..|.|.|+|++|+||+++ |..|.+||||++.+.+ ...+|+++++++||.|||.|.|++... ...|.|+|
T Consensus 11 ~~~~L~V~Vi~a~~L~~~---d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V 87 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAM---DANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV 87 (133)
T ss_pred CCCEEEEEEEEEcCCCCc---CCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence 468999999999999885 7788999999999743 245999999999999999999998743 36899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
||++..+ +|++||++.++++.. +....+||.+...
T Consensus 88 ~d~d~~~-----------~~~~lG~~~i~l~~~--~~~~~~W~~~l~~ 122 (133)
T cd08384 88 WDKDIGK-----------SNDYIGGLQLGINAK--GERLRHWLDCLKN 122 (133)
T ss_pred EeCCCCC-----------CccEEEEEEEecCCC--CchHHHHHHHHhC
Confidence 9998765 588999999999874 3344789987643
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=126.54 Aligned_cols=98 Identities=15% Similarity=0.268 Sum_probs=84.1
Q ss_pred CCCCcEEEEEECC-eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcccCCCC
Q 001521 349 TKGSPVVKIAVAN-SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRD 427 (1061)
Q Consensus 349 ~~~dPyv~v~~~~-~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~~ 427 (1061)
|.+||||+|.+++ ...+|++++++.||+|||.|.|.+.+.. ...|.|.|+|++. + ++++||.+.++|.++...
T Consensus 11 G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~-~~~l~i~v~d~~~---~-~d~~iG~~~v~L~~l~~~- 84 (111)
T cd04052 11 GLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR-KSRVTVVVKDDRD---R-HDPVLGSVSISLNDLIDA- 84 (111)
T ss_pred CCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC-CCEEEEEEEECCC---C-CCCeEEEEEecHHHHHhh-
Confidence 4789999999998 4679999999999999999999998876 7889999999987 6 899999999999999763
Q ss_pred CCCCCCCCeeEEccCCCccccceEEEEEEe
Q 001521 428 PPDSPLAPQWYRMEGGGAYSGDLMLATWVG 457 (1061)
Q Consensus 428 ~~~~~~~~~w~~L~~~~~~~G~i~l~~~~~ 457 (1061)
.....+||+|.+. ..|+|.++..+.
T Consensus 85 ---~~~~~~w~~L~~~--~~G~i~~~~~~~ 109 (111)
T cd04052 85 ---TSVGQQWFPLSGN--GQGRIRISALWK 109 (111)
T ss_pred ---hhccceeEECCCC--CCCEEEEEEEEe
Confidence 3346799999873 459998876553
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=132.97 Aligned_cols=103 Identities=22% Similarity=0.317 Sum_probs=84.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEec--CC-cEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYD--PC-TVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~--~~-~~l~i~v~ 715 (1061)
.+.|.|+|++|+||.++ | .+.+||||.+.+.+ .+.||++++++.||.|||.|.|.+.. .. ..|.|+||
T Consensus 14 ~~~L~V~V~~a~nL~~~---~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQL---D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCcc---c-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 47899999999999885 6 67899999999543 24489999999999999999999962 22 68999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|.+..+ ++++||++.|+......+...++|+.+..
T Consensus 90 ~~~~~~-----------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 90 QSGGVR-----------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred eCCCCC-----------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 998765 58899999999776665655678887753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=124.53 Aligned_cols=99 Identities=23% Similarity=0.302 Sum_probs=81.7
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeC-----CeEEEecccCCCCCCccccEEEEEEecC----CcEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYDP----CTVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~-----~~~~rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~v 714 (1061)
.+.|+|+|++|++|++. +..+.+||||++.+. ....||++++++.||.|||.|.|..... ...|.|+|
T Consensus 14 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v 90 (123)
T cd04035 14 NSALHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV 90 (123)
T ss_pred CCEEEEEEEEeeCCCCC---CCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence 46899999999999874 677899999999963 2356999999999999999999975432 46899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEE
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTY 757 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 757 (1061)
||++..+ +++||++.++|+++..+.....++
T Consensus 91 ~d~~~~~------------~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 91 LDEDRFG------------NDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEcCCcC------------CeeEEEEEEEcccCCCCcceEeec
Confidence 9998763 789999999999999877444443
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=125.26 Aligned_cols=115 Identities=23% Similarity=0.364 Sum_probs=93.1
Q ss_pred EEEEEEEeecCCCCCcccC--CCCCCCcEEEEEe------CCeEEEecccCCCC-CCccccEEEEEEecCC-cEEEEEEE
Q 001521 646 TVELGVIGCKNLLPMKTVN--GKSTTDAYVVAKY------ASKWIRTRTVSDSL-EPRWNEQYTWKVYDPC-TVLALGVF 715 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d--~~g~~dpyv~~~~------~~~~~rT~~~~~~~-~P~wne~~~~~v~~~~-~~l~i~v~ 715 (1061)
.|+|+|++|++|+.+ + ..+.+||||++++ .....||+++.++. ||.|||.|.|.+..+. ..|.++||
T Consensus 3 ~l~v~vi~a~~L~~~---~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKP---KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCC---CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEE
Confidence 689999999999875 5 4778999999997 34567999988876 9999999999998665 67999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
|++.. +|++||++.++++++..+. .+++|........ ..|.|.+.+.+
T Consensus 80 d~~~~------------~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~-~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSG------------DDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPL-ELSTLFVHIDI 127 (128)
T ss_pred eCCCC------------CCcEeEEEEEEhHHhcCce---EEEEecCCCCCCC-cceeEEEEEEE
Confidence 99865 2889999999999997765 5788876543322 23888887765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-13 Score=122.90 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=69.1
Q ss_pred EEEEEEEeecCCCCCCcEEEEEECC-----eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCC----CCC
Q 001521 337 LFVRVVKARFLPTKGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRG----DVA 407 (1061)
Q Consensus 337 L~V~v~~a~~L~~~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~----~~~ 407 (1061)
|.|.|++|+||++.+||||++.+++ .+++|+++++|+||+|||+|+|.+.. ...|.+.|||++.+ ...
T Consensus 1 L~V~V~~A~~L~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~~~d~~ 77 (118)
T cd08686 1 LNVIVHSAQGFKQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKVKLDGE 77 (118)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEccccccccccc
Confidence 5799999999999999999999864 36899999999999999999999874 67999999998310 014
Q ss_pred CCCCeeEEEEEECc
Q 001521 408 APPGFLGGICFDVT 421 (1061)
Q Consensus 408 ~~d~~lG~~~i~L~ 421 (1061)
+.|++||.+.+.|.
T Consensus 78 ~~d~~~G~g~i~Ld 91 (118)
T cd08686 78 GTDAIMGKGQIQLD 91 (118)
T ss_pred CcccEEEEEEEEEC
Confidence 68999988877764
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-13 Score=133.56 Aligned_cols=92 Identities=26% Similarity=0.417 Sum_probs=79.5
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||...+ .+.+||||++.+.. .+++|+++++++||.|||+|.|.+...... ...|.|+|||
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~-~~~L~~~V~~ 90 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD-TASLSLSVMQ 90 (137)
T ss_pred CCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC-ccEEEEEEEe
Confidence 4588999999999999988 88899999999842 367999999999999999999999754421 4689999999
Q ss_pred CCCCCCCCCCceeEEEEEECcc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
++.. +++++||++.+....
T Consensus 91 ~~~~---~~~~~lG~v~ig~~~ 109 (137)
T cd08409 91 SGGV---RKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCC---CCcceEEEEEECCcc
Confidence 9988 689999999998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=126.35 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=85.5
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC------eEEEecccCCCCCCccccEEEEEEec---CCcEEEEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS------KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALG 713 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~------~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~ 713 (1061)
..++|.|+|++|+||.++ +..|.+||||++.+.+ .+.||++++++.||+|||.|.|++.. ....|.|+
T Consensus 13 ~~~~L~V~VikarnL~~~---~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~ 89 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNL---AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFS 89 (138)
T ss_pred CCCeEEEEEEEecCCCcc---ccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEE
Confidence 367999999999999885 7788999999999632 23599999999999999999999973 33689999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
|||.+..+ ++++||++.+++.....++ .++|+.+..
T Consensus 90 V~~~~~~~-----------~~~~iG~v~l~~~~~~~~~-~~hW~~~l~ 125 (138)
T cd08408 90 VYNKRKMK-----------RKEMIGWFSLGLNSSGEEE-EEHWNEMKE 125 (138)
T ss_pred EEECCCCC-----------CCcEEEEEEECCcCCCchH-HHHHHHHHh
Confidence 99999865 5889999999988664322 267887753
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-14 Score=144.85 Aligned_cols=223 Identities=17% Similarity=0.202 Sum_probs=164.1
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECC-----eeeeeeeeecCCCCCcccceeE--EeeccCC-CCeEEEEEEecc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF-----QVQKTKVSVTRNGTPSWNEDLL--FVAAEPF-TDQLSFTLENRQ 562 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~wne~f~--f~v~~~~-~~~L~i~V~D~d 562 (1061)
+..+|..|++|.++ +.++..|||++..++. ...+|++.. +++||.|+|... +...++. ...+++.|.|.+
T Consensus 95 ~~~tl~~a~~lk~~-~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 95 LDTTLDRAKGLKPM-DINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred cceeechhcccchh-hhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhheeeccCc
Confidence 89999999999999 9999999999999962 456777777 999999999754 3333332 347889999988
Q ss_pred C-CCCceeEEEEEeccccccccccccccceEEEcccC----CCccCCccceEEEEEEeeCCcccccCcccccCCCchhhh
Q 001521 563 H-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENT----NDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTAR 637 (1061)
Q Consensus 563 ~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~----~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~ 637 (1061)
. ...+++|+..+++..|...+. .....|+.-.-+ ...+.+..|.|.+++.+..
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s-------------------- 230 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERADRDEDEERGAILISLAYSS-------------------- 230 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCcccccccchhhccceeeeeccCc--------------------
Confidence 8 888999999988888765432 223344443322 1122356677777654321
Q ss_pred ccCCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe---E--EEecccCCCCCCccccEEEEEEecCC---cE
Q 001521 638 QLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK---W--IRTRTVSDSLEPRWNEQYTWKVYDPC---TV 709 (1061)
Q Consensus 638 ~~~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~---~--~rT~~~~~~~~P~wne~~~~~v~~~~---~~ 709 (1061)
...-|.|++++|..|..+ |.+|.+||||..++... . -+|.+.+++++|.||+.|.|.+...+ ..
T Consensus 231 -----~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 231 -----TTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred -----CCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 234688999999999987 99999999999995432 2 28999999999999999999987433 67
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEe
Q 001521 710 LALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYP 758 (1061)
Q Consensus 710 l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 758 (1061)
+.|.|+|++...+ .+++|-+...+. ..+....+|+.
T Consensus 303 v~lsvgd~~~G~s-----------~d~~GG~~~g~~--rr~~v~~h~gr 338 (362)
T KOG1013|consen 303 VALSVGDYDIGKS-----------NDSIGGSMLGGY--RRGEVHKHWGR 338 (362)
T ss_pred EEEeecccCCCcC-----------ccCCCccccccc--ccchhhcCccc
Confidence 9999999887542 558887765433 33444455554
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.2e-13 Score=121.88 Aligned_cols=80 Identities=16% Similarity=0.343 Sum_probs=68.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC---
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD--- 78 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~--- 78 (1061)
|.|+|++|+||+ +.+||||++.++. .+++|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999994 5699999999853 46999999999999999999999974 37899999998
Q ss_pred ----CCCCCCCCCceeEEEEEECcc
Q 001521 79 ----KAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 ----d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
|.. ++|+.+|.+.+.|+.
T Consensus 71 ~~~~d~~---~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE---GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc---CcccEEEEEEEEECH
Confidence 455 579999998888764
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=132.87 Aligned_cols=107 Identities=30% Similarity=0.491 Sum_probs=90.4
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|.|+|++|+||+..+..+.+||||++.+.+ .+++|+++.++.||.|||+|.|.+..... ....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEe
Confidence 4689999999999999998889999999999854 36799999999999999999999876531 14689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEecccc
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 116 (1061)
.+.. +++++||++.+++.+ .+.....|++|...
T Consensus 91 ~~~~---~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~ 123 (134)
T cd00276 91 KDSV---GRNEVIGQVVLGPDS---GGEELEHWNEMLAS 123 (134)
T ss_pred cCCC---CCCceeEEEEECCCC---CCcHHHHHHHHHhC
Confidence 9987 579999999999998 33344579887764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-13 Score=124.82 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred CceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---C--eeeeeeeeecCCC-CCcccceeEEeeccCCCC-eEEEEE
Q 001521 486 PKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG---F--QVQKTKVSVTRNG-TPSWNEDLLFVAAEPFTD-QLSFTL 558 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~-nP~wne~f~f~v~~~~~~-~L~i~V 558 (1061)
|..+.|+|+|++|+||+++ +..+.+||||+|.+- . .+.||++++ +++ ||+|||+|.|++..+..+ .|.|+|
T Consensus 11 p~~~rLtV~VikarnL~~~-~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v 88 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSS-STPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKL 88 (135)
T ss_pred CcCCeEEEEEEEccCCCcc-cCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEE
Confidence 3344599999999999998 777778999999983 2 466777777 774 699999999999765433 788889
Q ss_pred EeccC-CCCceeEEEEEecccc
Q 001521 559 ENRQH-KGSVALGVTRVPLTAV 579 (1061)
Q Consensus 559 ~D~d~-~~d~~lG~~~i~l~~l 579 (1061)
||++. +++++||++.+.....
T Consensus 89 ~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 89 YSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EeCCCCcCCceEEEEEECCccC
Confidence 99987 8999999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-13 Score=126.48 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=82.5
Q ss_pred EEEeecCCCCCcccCCCCCCCcEEEEEeCCeE-------EEecccCCCCCCccccEEEEEEe-cCCcEEEEEEEeCCC--
Q 001521 650 GVIGCKNLLPMKTVNGKSTTDAYVVAKYASKW-------IRTRTVSDSLEPRWNEQYTWKVY-DPCTVLALGVFDSWG-- 719 (1061)
Q Consensus 650 ~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~-------~rT~~~~~~~~P~wne~~~~~v~-~~~~~l~i~v~d~~~-- 719 (1061)
-.++|++|++. |..|.+||||++++.+.. .||+++++++||.|||.|.|.+. +....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~---d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDK---DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCC---CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 35889999874 778999999999976542 69999999999999999999865 455789999999997
Q ss_pred --CCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 720 --IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 720 --~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.+ +|++||++.+++++|..+.....+++|..
T Consensus 82 ~~~~-----------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDLS-----------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 44 58899999999999987665577888843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=125.05 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECCee--eeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCCc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQV--QKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGSV 567 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~--~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d~ 567 (1061)
|+|.|++|++|+.+ |..+.+||||++.++++. .||++++ ++.||.|||.|.|.+..+....|.|+|||++. ++++
T Consensus 2 lrV~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 2 VRVYVVRARNLQPK-DPNGKSDPYLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDD 79 (124)
T ss_pred EEEEEEECcCCCCC-CCCCCCCcEEEEEECCeeccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCc
Confidence 79999999999998 888999999999998755 4677777 89999999999999877777899999999998 8999
Q ss_pred eeEEEEEeccccc
Q 001521 568 ALGVTRVPLTAVE 580 (1061)
Q Consensus 568 ~lG~~~i~l~~l~ 580 (1061)
+||++.+++.+..
T Consensus 80 ~iG~~~i~l~~~~ 92 (124)
T cd04037 80 LIGETVIDLEDRF 92 (124)
T ss_pred eeEEEEEeecccc
Confidence 9999999999765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-13 Score=130.12 Aligned_cols=103 Identities=22% Similarity=0.306 Sum_probs=87.2
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-----EEEecccCCCCCCccccEEEEEEecC---CcEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-----WIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-----~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~v~ 715 (1061)
.|.|.|.|++|++|+.. |..+.+||||.+.+.+. ..+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~---~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPS---DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCc---cCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 47899999999999874 77889999999996542 34899999999999999999998754 478999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceec
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
|.+..+ ++++||++.+++++ .+...++|++|...
T Consensus 90 d~~~~~-----------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG-----------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC-----------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998765 58899999999999 44445889998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=124.79 Aligned_cols=97 Identities=24% Similarity=0.439 Sum_probs=81.1
Q ss_pred CCcEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..+.|+|+|++|++|+..+..+.+||||++.+. ...++|+++++++||.|||+|.|.........+..|.|+|||
T Consensus 13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 457899999999999999888999999999983 247899999999999999999996433221124689999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceec
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
++.+ ++++||++.+++.+|...
T Consensus 93 ~~~~----~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 93 EDRF----GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred cCCc----CCeeEEEEEEEcccCCCC
Confidence 9987 388999999999997643
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-13 Score=171.72 Aligned_cols=118 Identities=23% Similarity=0.347 Sum_probs=102.6
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCC--cEEEEEEEeCC
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPC--TVLALGVFDSW 718 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~--~~l~i~v~d~~ 718 (1061)
-..|.|.|+|++|.+|. +..|++||||++.+|+. +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-----~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-----QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-----cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 44799999999999994 34689999999999965 779999999999999999999999876 78999999999
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccE---EEEEEEEE
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGE---IEVAVRFI 780 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~---i~l~~~f~ 780 (1061)
.++ ++.||++.|++.++..+..++.||+|..+ | ++.|+ |++++.|+
T Consensus 2052 ~f~------------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG------------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC------------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEec
Confidence 885 44999999999999999999999999742 2 23477 88888885
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-13 Score=171.67 Aligned_cols=119 Identities=17% Similarity=0.361 Sum_probs=100.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
-|.|.|+|++|+||. +..|.+||||++.++++ ++||++++++.||+|||+|.|.+.+++. +..|+|+|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF- 2053 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc-
Confidence 389999999999997 44789999999999965 8899999999999999999999988764 57799999999999
Q ss_pred CCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeE---EEEEEEEEe
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGE---VGLKIYYVD 134 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~~ 134 (1061)
+ ++.||.+.+++.++...+. ...||+|.+++ ...|. |++++.|.+
T Consensus 2054 --~-kd~~G~~~i~l~~vv~~~~-~~~~~~L~~~~---~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 --G-KSSLGKVTIQIDRVVMEGT-YSGEYSLNPES---NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred --C-CCCCceEEEEHHHHhcCce-eeeeeecCccc---ccCCCcceEEEEEEecC
Confidence 3 4589999999999876554 45799998643 23676 999999864
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-13 Score=147.53 Aligned_cols=124 Identities=27% Similarity=0.471 Sum_probs=107.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC-
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP- 83 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~- 83 (1061)
..+.++|++|.+|.++|..|++||||.+.++..+.||++|...+||+|||.|+|..++.. .++.+.|||+|....
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHH
Confidence 467899999999999999999999999999999999999999999999999999999975 789999999886410
Q ss_pred -------CCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 84 -------TTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 84 -------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
...|||||+..|.+..|- .+.+.||.|+++...+.+.|-|++.|...-.
T Consensus 371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 135899999999988752 2346799999998889999988888776553
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.1e-12 Score=119.05 Aligned_cols=90 Identities=17% Similarity=0.335 Sum_probs=75.1
Q ss_pred EEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeccCCCCCCeeeceeEEeecCCCC-CCCCeEEEEEeeCCCC
Q 001521 9 VEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHTAVRDLNPTWNEALEFNVGKPPQ-VFTDMFELNIFHDKAY 81 (1061)
Q Consensus 9 V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~tlnP~W~e~f~f~v~~~~~-~~~~~L~v~v~d~d~~ 81 (1061)
+-.++|++|+..|..|++||||++.+.+ ..++|+++++++||.|| +|.|.+..... .....|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3466999999999999999999999854 35899999999999999 68887643221 1147899999999998
Q ss_pred CCCCCCceeEEEEEECcccee
Q 001521 82 GPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 82 ~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
++|++||++.+++.+|..
T Consensus 83 ---~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 83 ---GKHDLIGEFETTLDELLK 100 (110)
T ss_pred ---CCCcEEEEEEEEHHHHhc
Confidence 689999999999999863
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-12 Score=134.71 Aligned_cols=208 Identities=14% Similarity=0.129 Sum_probs=150.2
Q ss_pred ccEEEEEEEEeecCCC-----CCCcEEEEEECC-----eeeeeccccCCCCceeeeEEEEe--ccCCCCCCeEEEEEEcC
Q 001521 334 MHYLFVRVVKARFLPT-----KGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFG--RDSPESSSFLEVSVWDP 401 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-----~~dPyv~v~~~~-----~~~kT~~~~~t~nP~Wne~f~f~--v~~~~~~~~L~i~V~d~ 401 (1061)
...+.+++.+|++|.. ..||||+..++. .+++|++..+++||.|+|+-.+. ..+......+.+.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 4467889999999875 889999999865 46889999999999999976554 33322156778889998
Q ss_pred CCCCCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC--------CccccceEEEEEEeccCCCCCCCccccCCC
Q 001521 402 PRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG--------GAYSGDLMLATWVGTQADDSFPDAWKTDTA 473 (1061)
Q Consensus 402 d~~~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~--------~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~ 473 (1061)
+. +..++++|+..+.|..+..++. .....|+.-+-. -..+|.|.+++-+
T Consensus 172 ~~---~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~----------------- 228 (362)
T KOG1013|consen 172 DK---KTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAY----------------- 228 (362)
T ss_pred cc---cccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeecc-----------------
Confidence 87 7889999999999888776421 222333322111 0233444443221
Q ss_pred CCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEEC---C--eeeeeeeeecCCCCCcccceeEEeecc
Q 001521 474 GNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQLG---F--QVQKTKVSVTRNGTPSWNEDLLFVAAE 548 (1061)
Q Consensus 474 ~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~nP~wne~f~f~v~~ 548 (1061)
.....-|.|++++|.+|..+ |+++.+||||+..+. + .+.||.+.+ ++.||.|++.|.|.+..
T Consensus 229 -----------~s~~~~l~vt~iRc~~l~ss-Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 229 -----------SSTTPGLIVTIIRCSHLASS-DSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KTLNPEFDEEFFYDIGP 295 (362)
T ss_pred -----------CcCCCceEEEEEEeeeeecc-ccCCCCCccceeecCCCcchhhcccCcchh-ccCCccccccccccCCc
Confidence 11122389999999999999 999999999999984 2 345666666 99999999999988743
Q ss_pred CC--CCeEEEEEEeccC-CCCceeEEEEEecc
Q 001521 549 PF--TDQLSFTLENRQH-KGSVALGVTRVPLT 577 (1061)
Q Consensus 549 ~~--~~~L~i~V~D~d~-~~d~~lG~~~i~l~ 577 (1061)
-. ...+.|.|+|++. +..+++|-+..-+.
T Consensus 296 gdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cchhcceEEEeecccCCCcCccCCCccccccc
Confidence 22 3479999999988 68888887665443
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.7e-12 Score=110.74 Aligned_cols=82 Identities=30% Similarity=0.667 Sum_probs=74.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
|+|+|++|+||...+..+.+||||++.+++ ..++|+++.++.+|.|+|+|.|.+.... ...|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~-- 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSF-- 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSS--
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCC--
Confidence 789999999999988888999999999977 6799999999999999999999987776 35699999999999
Q ss_pred CCCCceeEEEE
Q 001521 84 TTRNNFLGRIR 94 (1061)
Q Consensus 84 ~~~d~~lG~~~ 94 (1061)
++|++||++.
T Consensus 76 -~~~~~iG~~~ 85 (85)
T PF00168_consen 76 -GKDELIGEVK 85 (85)
T ss_dssp -SSEEEEEEEE
T ss_pred -CCCCEEEEEC
Confidence 6799999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-11 Score=136.99 Aligned_cols=180 Identities=17% Similarity=0.277 Sum_probs=123.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHH---HHhhhccccCCchhhHHHHHHHHHHHHcChhh-H-HHHHHHHHHHHhhccc
Q 001521 847 HAFSMRKVRANWFRIINVLAGVIDIL---RWADDTRSWKNPTATILVHALLVMLVWFPDLI-V-PTLAFYVFVIGVWNYR 921 (1061)
Q Consensus 847 ~~fs~~~~~~N~~Rl~~~~~~~~~~~---~~i~~l~~W~~P~~T~~~~~~~~~~~~~p~l~-~-p~~~~~l~~~~~~~~~ 921 (1061)
+.+|++++.+|+.||.+.+..++.++ +.+.++++|++|..|+.++++|+++|++|.+. + ..+++.++++++..|.
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl 80 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYL 80 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999 99999999999999999999999999998884 2 2233334444444544
Q ss_pred ccC-CCCCCCCCCCcccccccCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccC
Q 001521 922 FRK-RDPLPHFDPKISLADTIERDELDEEFDTVPSARPNEIVRARYDKLRTLGARVQTLLGDFAAQGERVQA----LVTW 996 (1061)
Q Consensus 922 ~~~-~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~va~~~E~~~n----l~~w 996 (1061)
.+. .+.. .... +..+.+.+....|+-.++ -.++...+..+||.|+.+.+.++.+.. .++|
T Consensus 81 ~~~p~~~~-~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f 145 (359)
T PF06398_consen 81 YRHPSPTS-SLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNF 145 (359)
T ss_pred eecCCCcc-cccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 432 1111 0000 000001111111111101 234445555899999999988888874 4579
Q ss_pred CChhHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHhh-hcCCcccCC
Q 001521 997 RDPRATGIFVGLCFVVAMIL----YLVPSKMVAMAFGFYY-LRHPMFRDR 1041 (1061)
Q Consensus 997 ~~P~~t~~~~~~l~~~~~vl----~~iP~r~i~l~~g~~~-l~~P~~~~~ 1041 (1061)
+++..|.+++.+|+++.+.+ .+||+|++++++|..+ +.||..++.
T Consensus 146 ~~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 146 SDENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 99999998888777666644 4689999999999443 789987754
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=115.60 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=73.6
Q ss_pred EEEEeecCCCCCcccCCCCCCCcEEEEEeCCe------EEEecccCCCCCCccccEEEEEEec-----CCcEEEEEEEeC
Q 001521 649 LGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK------WIRTRTVSDSLEPRWNEQYTWKVYD-----PCTVLALGVFDS 717 (1061)
Q Consensus 649 v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~------~~rT~~~~~~~~P~wne~~~~~v~~-----~~~~l~i~v~d~ 717 (1061)
+-.++|++|+.+ |..|.+||||++++.+. ..+|+++++++||.|| .|.|++.+ ....|.|+|||+
T Consensus 4 ~~~i~a~~L~~~---d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKK---DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCC---CCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 345689999875 88899999999996443 3699999999999999 68887643 357999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
+..+ +|++||++.+++++|...+
T Consensus 80 d~~~-----------~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG-----------KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC-----------CCcEEEEEEEEHHHHhcCC
Confidence 9876 5899999999999998555
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-11 Score=133.03 Aligned_cols=131 Identities=21% Similarity=0.327 Sum_probs=104.3
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 723 (1061)
...+.++|+-|+||.+ +|..|++||||.+..|..+.||+++..++||+|||.|.|...+....|.+.|||+|..-..
T Consensus 294 sakitltvlcaqgl~a---kdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIA---KDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred ceeeEEeeeeccccee---cccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHH
Confidence 3578899999999987 6999999999999999999999999999999999999999999999999999999864310
Q ss_pred CCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
.---+.....|+|||+..|-+..+... .+.||.|..+..+... +|.|+|.+..+
T Consensus 371 klrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksav-sgairlhisve 424 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSAV-SGAIRLHISVE 424 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhhc-cceEEEEEEEE
Confidence 000011334699999999999998643 3789999877554433 48887655543
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.5e-10 Score=126.26 Aligned_cols=240 Identities=20% Similarity=0.216 Sum_probs=156.4
Q ss_pred eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-----CCCceeEEEEEeccccccccccccccceEEEcc
Q 001521 522 QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-----KGSVALGVTRVPLTAVERRVDDRKVASRWFTFE 596 (1061)
Q Consensus 522 ~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~ 596 (1061)
+..+|..+. +.+||.|.+.|.+.......+.|++.++|.+. ...+++|++.+.++++...... ..-+.++
T Consensus 41 e~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLLLK 115 (529)
T ss_pred cccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhhcc
Confidence 455888888 99999999999888877888899999999875 5788999999999998743211 0111222
Q ss_pred cCCCccCCccceEEEEEEeeCCcccccCcccccCCCchhhhccCCCCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEE
Q 001521 597 NTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK 676 (1061)
Q Consensus 597 ~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~ 676 (1061)
. ......|.|.+.+.-.... + ....-.++|.+|.+ +|..+++|||..++
T Consensus 116 ~---~~~~~~g~iti~aee~~~~-----------~--------------~~~~~~~~~~~ld~---kd~f~ksd~~l~~~ 164 (529)
T KOG1327|consen 116 P---GKNAGSGTITISAEEDESD-----------N--------------DVVQFSFRAKNLDP---KDFFSKSDPYLEFY 164 (529)
T ss_pred c---CccCCcccEEEEeeccccc-----------C--------------ceeeeeeeeeecCc---ccccccCCcceEEE
Confidence 1 1223456666654321100 0 11112344788844 79999999999887
Q ss_pred --e-CCeEE---EecccCCCCCCccccEEEEEEe-----cCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcc
Q 001521 677 --Y-ASKWI---RTRTVSDSLEPRWNEQYTWKVY-----DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIS 745 (1061)
Q Consensus 677 --~-~~~~~---rT~~~~~~~~P~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~ 745 (1061)
+ .+.+. +|.+++++++|.|- .|.++.. ++...+.|.|||++..+ ++++||++..+++
T Consensus 165 ~~~~d~s~~~~~~tEv~~n~l~p~w~-~~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----------~~~~ig~~~tt~~ 232 (529)
T KOG1327|consen 165 KRVDDGSTQMLYRTEVVKNTLNPQWA-PFSISLQSLCSKDGNRPIQIECYDYDSNG-----------KHDLIGKFQTTLS 232 (529)
T ss_pred EecCCCceeeccccceeccCCCCccc-ccccchhhhcccCCCCceEEEEeccCCCC-----------CcCceeEecccHH
Confidence 3 33443 99999999999994 4555543 45588999999999876 6899999999999
Q ss_pred cccC-Cc--EEeeEEeceecCCCCCccccEEEE-------------------EEEEEecCCchhhhhhcCCCCCC-Cccc
Q 001521 746 TLET-GK--VYRNTYPLLLLGSNGMTKMGEIEV-------------------AVRFIRTSPTLDFLHVYSQPLLP-LMHH 802 (1061)
Q Consensus 746 ~l~~-~~--~~~~~~~L~~~~~~~~~~~G~i~l-------------------~~~f~~~~~~~~~~~~~~~p~~p-~~~~ 802 (1061)
++.. +. .+....|-...+.+..+..|.+.+ .+.|+-. +++.+++..|..| ..||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vg---IDfTaSNg~p~~~sSLHy 309 (529)
T KOG1327|consen 233 ELQEPGSPNQIMLINPKKKAKKKSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVG---IDFTASNGDPRNPSSLHY 309 (529)
T ss_pred HhcccCCcccccccChhhhhhhhcccccceEEehheeehhhhhHHHHHccCceeeeEEE---EEEeccCCCCCCCCccee
Confidence 9963 11 112222222111112222366543 2223222 5677777788776 5699
Q ss_pred cCCccHHHHH
Q 001521 803 IKPLGMVQQE 812 (1061)
Q Consensus 803 ~~p~~~~~~~ 812 (1061)
++|-..++-+
T Consensus 310 i~p~~~N~Y~ 319 (529)
T KOG1327|consen 310 IDPHQPNPYE 319 (529)
T ss_pred cCCCCCCHHH
Confidence 9997776643
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-10 Score=102.53 Aligned_cols=81 Identities=22% Similarity=0.346 Sum_probs=73.0
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECC---eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccC-CCC
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF---QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQH-KGS 566 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~-~~d 566 (1061)
|+|+|++|+||+.. +..+.+||||++.+++ ...+|+++. ++.+|.|+|.|.|.+..+..+.|.|+|||++. +++
T Consensus 1 L~v~I~~a~~L~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~ 78 (85)
T PF00168_consen 1 LTVTIHSARNLPSK-DSNGKPDPYVRVSVNGSESTKYKTKVKK-NTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKD 78 (85)
T ss_dssp EEEEEEEEESSSSS-STTSSBEEEEEEEEETTTCEEEEECCBS-SBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSE
T ss_pred CEEEEEEEECCCCc-ccCCcccccceeecceeeeeeeeeeeee-ccccceeeeeeeeeeecccccceEEEEEECCCCCCC
Confidence 78999999999988 7788999999999975 568999888 88999999999999887877789999999998 779
Q ss_pred ceeEEEE
Q 001521 567 VALGVTR 573 (1061)
Q Consensus 567 ~~lG~~~ 573 (1061)
++||++.
T Consensus 79 ~~iG~~~ 85 (85)
T PF00168_consen 79 ELIGEVK 85 (85)
T ss_dssp EEEEEEE
T ss_pred CEEEEEC
Confidence 9999873
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-10 Score=102.64 Aligned_cols=101 Identities=37% Similarity=0.718 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTT 85 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~ 85 (1061)
|.|+|++|++|......+.++|||.+.+.+ ..++|.++.++.||.|+|.|.|.+.... ...|.|+|||.+.. +
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~---~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRF---S 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCC---C
Confidence 579999999998877778999999999988 8999999999999999999999998843 47899999999988 4
Q ss_pred CCceeEEEEEECccceecCceeeEEEec
Q 001521 86 RNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 86 ~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
++.++|.+.+++.++.........|++|
T Consensus 75 ~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999976233445568764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.09 E-value=8e-10 Score=131.33 Aligned_cols=127 Identities=19% Similarity=0.259 Sum_probs=106.5
Q ss_pred ceEEEEEEEeecCCCCCcc---------------cCCCCCCCcEEEEEeCCeEE-EecccCCC-CCCccccEEEEEEecC
Q 001521 644 VGTVELGVIGCKNLLPMKT---------------VNGKSTTDAYVVAKYASKWI-RTRTVSDS-LEPRWNEQYTWKVYDP 706 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~---------------~d~~g~~dpyv~~~~~~~~~-rT~~~~~~-~~P~wne~~~~~v~~~ 706 (1061)
-|.|.|+|++|++|+.++. ....+.|||||.|.+++.++ ||+++.+. .||.|||.|.+++.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3889999999999975310 11246789999999999988 99999885 6999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 707 ~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
.+.++|+|.|.+.++ ..+||++.||+.+|..|...+.|+++.....+-.+....|+++++|+.-
T Consensus 87 ~~~v~f~vkd~~~~g------------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG------------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC------------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999987 5599999999999999998899999987654333332479999999864
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.2e-10 Score=125.87 Aligned_cols=118 Identities=18% Similarity=0.283 Sum_probs=92.2
Q ss_pred cEEEEEEEEeeCCCC-----CCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 5 QKLIVEVVDARNLLP-----KDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~-----~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
..|.|+|+.|.++.. .+.....||||+|.+.| .+++|++..|+.||.|||+|.|.+..++. ..|+|+
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEEE
Confidence 579999999998741 12245679999999954 46788888889999999999999998873 579999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|+|.. .+|+|+|+..+|+..|.. +.++++|..+....-..-.|.+++.|
T Consensus 486 V~D~D~~---~~ddfiGQ~~LPv~~Lr~----GyR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYEVS---TADAFCGQTCLPVSELIE----GIRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecCCC---CCCcEEEEEecchHHhcC----CceeEeccCCCcCCCCCceEEEEEEe
Confidence 9999987 579999999999999632 45688888755333234566666665
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-11 Score=136.60 Aligned_cols=129 Identities=27% Similarity=0.502 Sum_probs=107.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--------------------------C-----eEEEeeccCCCCCCeeec
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYY--------------------------G-----QRRKTHTAVRDLNPTWNE 54 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~--------------------------~-----~~~~T~~~~~tlnP~W~e 54 (1061)
.|.|.+.+|+||.++|.+|.+|||+...+- | -.+-|.+.++|+||.|+|
T Consensus 115 ~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~E 194 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhh
Confidence 455777899999999999999999998760 1 013488899999999999
Q ss_pred eeEEeecCCCCCCCCeEEEEEeeCCCCCC------------------------------CCC---CceeEEEEEECccce
Q 001521 55 ALEFNVGKPPQVFTDMFELNIFHDKAYGP------------------------------TTR---NNFLGRIRLSSSQFV 101 (1061)
Q Consensus 55 ~f~f~v~~~~~~~~~~L~v~v~d~d~~~~------------------------------~~~---d~~lG~~~v~l~~l~ 101 (1061)
.|.|.+.+.. ...+++-+||+|.-.+ ++. |||||++.+++.++.
T Consensus 195 kF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 195 KFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred heeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 9999999987 6789999999986522 234 899999999999986
Q ss_pred ecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCC
Q 001521 102 KKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 102 ~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~ 139 (1061)
..| .++||.|++++..++++|.+++.+.+.......
T Consensus 272 ~~G--ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 272 PDG--LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred cch--HHHHhccCcccccccccceEEEEEEEeeecccc
Confidence 655 357999999999999999999999998865543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-09 Score=103.94 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=77.9
Q ss_pred EEEEEEEeeCCCCCCC--CC--CCCcEEEEEECC---eEEEeeccCCCCC--CeeeceeEEeecCCC-------------
Q 001521 7 LIVEVVDARNLLPKDG--HG--TSSPYVVIDYYG---QRRKTHTAVRDLN--PTWNEALEFNVGKPP------------- 64 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~--~g--~~dPyv~v~~~~---~~~~T~~~~~tln--P~W~e~f~f~v~~~~------------- 64 (1061)
|+|.|.+|+++...+. .| ++||||++.+.+ .+++|.+..+++| |.||+.|.|.+.-..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 8999999999654433 55 599999999964 6799999999999 999999999876521
Q ss_pred -------CCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceec
Q 001521 65 -------QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 65 -------~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
......|.++|||.|.+ ++|++||++.++|..+.+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~---s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKF---SPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEecCcEEEEEEEECccc---CCCCcceEEEEEhhhcccc
Confidence 11257899999999999 6899999999999986543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=98.57 Aligned_cols=91 Identities=34% Similarity=0.708 Sum_probs=80.4
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ---RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|.|+|++|++|......+..+|||++.+.+. .++|+++.++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~- 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF- 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCc-
Confidence 47899999999988776678999999999764 899999999999999999999998875 48899999999987
Q ss_pred CCCCCceeEEEEEECcccee
Q 001521 83 PTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~ 102 (1061)
+.+.++|.+.+++.++..
T Consensus 77 --~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 --GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred --cCCceeEEEEEEHHHccc
Confidence 468999999999988654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=97.43 Aligned_cols=99 Identities=29% Similarity=0.462 Sum_probs=84.0
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCC-eEEEecccCCCCCCccccEEEEEEec-CCcEEEEEEEeCCCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS-KWIRTRTVSDSLEPRWNEQYTWKVYD-PCTVLALGVFDSWGIFEGE 724 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~-~~~rT~~~~~~~~P~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~ 724 (1061)
|.|.|++|++|... ...+..+|||.+.+.+ ...+|.++.++.||.||+.|.|++.. ....|.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 47899999999763 4566899999999888 78899999999999999999999997 6788999999998765
Q ss_pred CCCCCCCCCCcceEEEEEEccccc-CCcEEeeEEec
Q 001521 725 NGSMETTRPDCRIGKVRIRISTLE-TGKVYRNTYPL 759 (1061)
Q Consensus 725 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 759 (1061)
.+.+||++.+++..+. .+.....|++|
T Consensus 75 --------~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --------KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --------CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 4789999999999997 44444667664
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=125.66 Aligned_cols=127 Identities=17% Similarity=0.311 Sum_probs=103.9
Q ss_pred CcEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECC-eEEEeeccCCC-CCCeeeceeEEeecCC
Q 001521 4 IQKLIVEVVDARNLLPKD------------------GHGTSSPYVVIDYYG-QRRKTHTAVRD-LNPTWNEALEFNVGKP 63 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d------------------~~g~~dPyv~v~~~~-~~~~T~~~~~t-lnP~W~e~f~f~v~~~ 63 (1061)
.|.|.|+|.+|++|+..+ ..+++||||+|.+++ ...||+++.+. .||.|+|+|++.+...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 488999999999997531 136789999999988 67899999885 6999999999999987
Q ss_pred CCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCe-eeeEEEEEEEEEeCCCCC
Q 001521 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW-IQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 64 ~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~~~~~~~ 139 (1061)
. ..+.|.|.|.|.++ ..+||.+.+|+.+++. ++..+.||++.....+.. ..-+|+++++|++....+
T Consensus 87 ~----~~v~f~vkd~~~~g----~~~ig~~~~p~~~~~~-g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 87 A----SNIIFTVKDDNPIG----ATLIGRAYIPVEEILD-GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred c----ceEEEEEecCCccC----ceEEEEEEEEHHHhcC-CCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCc
Confidence 6 78999999999993 5699999999999765 455778999877543322 334999999999965543
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.9e-09 Score=100.29 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=75.4
Q ss_pred EEEEEEEeecCCC---------CCCcEEEEEECC---eeeeeccccCCCC--ceeeeEEEEeccC---------------
Q 001521 337 LFVRVVKARFLPT---------KGSPVVKIAVAN---SRVESKPARRTSC--FEWDQTFAFGRDS--------------- 387 (1061)
Q Consensus 337 L~V~v~~a~~L~~---------~~dPyv~v~~~~---~~~kT~~~~~t~n--P~Wne~f~f~v~~--------------- 387 (1061)
|+|.|.+|+|++. .+||||++.+.+ .+++|.+.++++| |.||+.|.|.+..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 7899999999653 499999999976 5789999999999 9999999988655
Q ss_pred --------CCCCCeEEEEEEcCCCCCCCCCCCeeEEEEEECcccCCC
Q 001521 388 --------PESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLR 426 (1061)
Q Consensus 388 --------~~~~~~L~i~V~d~d~~~~~~~d~~lG~~~i~L~~l~~~ 426 (1061)
.. ...|.|+|||.|. ++.|++||++.++|..+...
T Consensus 82 ~~~~~~e~~~-~~~L~lqvwD~D~---~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 82 WSLDETEYKI-PPKLTLQVWDNDK---FSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cccCcceEec-CcEEEEEEEECcc---cCCCCcceEEEEEhhhcccc
Confidence 22 6899999999998 78999999999999988873
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-09 Score=120.77 Aligned_cols=119 Identities=18% Similarity=0.274 Sum_probs=90.9
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPK------DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.|.+|... +.....||||+|.+-| .+++|+++.++.||.|||+|.|.+..++. ..|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL---Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL---ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc---cEEE
Confidence 46799999999887421 1123359999999843 67899999999999999999999998763 5799
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|||+|.. ++++|+|+..+|+..|.. +.+|++|..+....-..-.|.+++.|
T Consensus 546 f~V~D~D~~---~~ddfiGq~~lPv~~Lr~----GyR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 546 IEVREYDMS---EKDDFGGQTCLPVSELRP----GIRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEecCCC---CCCCeEEEEEcchhHhcC----CceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 999999988 579999999999999643 45699998654332223355555544
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=95.09 Aligned_cols=91 Identities=30% Similarity=0.474 Sum_probs=78.7
Q ss_pred EEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe---EEEecccCCCCCCccccEEEEEEecC-CcEEEEEEEeCCCCCC
Q 001521 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK---WIRTRTVSDSLEPRWNEQYTWKVYDP-CTVLALGVFDSWGIFE 722 (1061)
Q Consensus 647 l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~---~~rT~~~~~~~~P~wne~~~~~v~~~-~~~l~i~v~d~~~~~~ 722 (1061)
|.|.|+.|++|... +..+..+|||.+++++. ..+|+++.++.||.||+.|.|++..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~---~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKK---DKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCC---CCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 67999999999763 33457899999998775 67999999999999999999999987 799999999998764
Q ss_pred CCCCCCCCCCCCcceEEEEEEcccccCCc
Q 001521 723 GENGSMETTRPDCRIGKVRIRISTLETGK 751 (1061)
Q Consensus 723 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 751 (1061)
.+.+||.+.+++.++..+.
T Consensus 78 ----------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----------CCceeEEEEEEHHHcccCc
Confidence 4889999999999987655
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=116.41 Aligned_cols=120 Identities=21% Similarity=0.321 Sum_probs=90.5
Q ss_pred ceEEEEEEEeecCCCC-C-cccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEEE
Q 001521 644 VGTVELGVIGCKNLLP-M-KTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVF 715 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~-~-~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~ 715 (1061)
...|.|+|+++++++. . +..+.....||||.|.+.| ...+|.+..++.||.|||.|.|++..|. ..|.|.|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 3579999999999852 1 1112334679999999544 2347877778999999999999999877 78999999
Q ss_pred eCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|+|... .|+|||+..+|++.|..|- +..||..+..... ....|-++|+
T Consensus 488 D~D~~~-----------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l---~~~~Ll~~f~ 535 (537)
T PLN02223 488 DYEVST-----------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKAC---SSTMLLTRFK 535 (537)
T ss_pred ecCCCC-----------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCC---CCceEEEEEE
Confidence 999765 5889999999999999987 5678876543222 2245555554
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=118.13 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=92.0
Q ss_pred CcEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLLPK------DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~------d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.+.++... +.....||||+|.+-| .+++|++..++.||.|||+|.|.+..+++ ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL---AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL---ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce---eEEE
Confidence 36799999999986421 2233579999999943 56799999999999999999999998774 6899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|+|+|+|.. .+|+|+|+..+|+..|. . +.+.++|..+....-..-.|.+++.+
T Consensus 545 f~V~d~d~~---~~ddfiGQ~~lPv~~Lr-~---GyR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 545 VEVHEHDIN---EKDDFGGQTCLPVSEIR-Q---GIHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEECCCC---CCCCEEEEEEcchHHhh-C---ccceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999987 57999999999999963 2 45678887765333233466666655
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=117.87 Aligned_cols=119 Identities=21% Similarity=0.414 Sum_probs=95.0
Q ss_pred EEEEEEEEeeCCCCCCC----CCCCCcEEEEEECC-----eEEEee-ccCCCCCCeeeceeEEeecCCCCCCCCeEEEEE
Q 001521 6 KLIVEVVDARNLLPKDG----HGTSSPYVVIDYYG-----QRRKTH-TAVRDLNPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 6 ~L~V~v~~a~~L~~~d~----~g~~dPyv~v~~~~-----~~~~T~-~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v 75 (1061)
.|.|+|..+.++.+.-. +..+||||.|.+-| ...+|+ +..|+-||.|+|+|+|.+..+++ .-|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 69999999997654432 35789999999955 578999 55778999999999999999885 6799999
Q ss_pred eeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
+|+|.. ++|||+|+..+|+..|. . +.+-++|..+....-..-.|.+++.+.+
T Consensus 694 ~d~d~~---~~ddF~GQ~tlP~~~L~-~---GyRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 694 HDYDYI---GKDDFIGQTTLPVSELR-Q---GYRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EecCCC---CcccccceeeccHHHhh-C---ceeeeeecCCCCccccceeEEEEEEEec
Confidence 999998 68999999999999963 2 4556888876444445567777777653
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=114.66 Aligned_cols=120 Identities=22% Similarity=0.252 Sum_probs=92.5
Q ss_pred ceEEEEEEEeecCCCCCc---ccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMK---TVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~---~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.|++|+.-. ..|.....||||.|...+ ...+|+++.++.||.|||.|.|++..+. ..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 357999999999985311 112223459999999543 4559999999999999999999998775 7899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
+|+|..+ .|+++|+..+|++.|..|. +++||.... |. ..+...|-++|.
T Consensus 549 ~D~D~~~-----------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~-~l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE-----------KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GE-KLKNVRLLMRFI 597 (599)
T ss_pred EecCCCC-----------CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CC-CCCCEEEEEEEE
Confidence 9998865 5889999999999999988 488996543 32 236667777764
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=115.17 Aligned_cols=119 Identities=18% Similarity=0.307 Sum_probs=91.2
Q ss_pred CcEEEEEEEEeeCCC---CC---CCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEE
Q 001521 4 IQKLIVEVVDARNLL---PK---DGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~---~~---d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~ 72 (1061)
...|.|+|+.+.++. +. +.....||||+|.+.| .+++|+++.++.||.|||+|.|.+..++. ..|+
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL---AllR 527 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL---ALLR 527 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce---eEEE
Confidence 457999999998752 11 1234579999999943 57899999999999999999999988763 6799
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
|.|||+|.. ..|+|+|+..+|+..|. . +.+.++|..+....-..-.|.+++.+
T Consensus 528 f~V~d~D~~---~~ddfigq~~lPv~~Lr-~---GyR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 528 LEVHEYDMS---EKDDFGGQTCLPVWELS-Q---GIRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEECCCC---CCCcEEEEEEcchhhhh-C---ccceEEccCCCcCCCCCeeEEEEEEe
Confidence 999999987 57999999999999963 2 45678887754332233466666654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=89.77 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=71.7
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 7 LIVEVVDARNLLPKD---GHGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d---~~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
|.|+|..|+|+...+ ..+++||||.+++++ ++.||++ +.||.|||+|.|.+.. ..++.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 689999999998887 578899999999988 4889988 4799999999999953 47899999998654
Q ss_pred CCCCCceeEEEEEECccceec
Q 001521 83 PTTRNNFLGRIRLSSSQFVKK 103 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~ 103 (1061)
..--+|...+.+.+|.+.
T Consensus 72 ---~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 72 ---QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred ---eecceeeehhhHHHHHHH
Confidence 356789999998887653
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.1e-08 Score=113.66 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=95.6
Q ss_pred cEEEEEEEEeeCCC---CCC---CCCCCCcEEEEEECC-----eEEEeeccCCCCCCee-eceeEEeecCCCCCCCCeEE
Q 001521 5 QKLIVEVVDARNLL---PKD---GHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTW-NEALEFNVGKPPQVFTDMFE 72 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~---~~d---~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W-~e~f~f~v~~~~~~~~~~L~ 72 (1061)
..|+|+|+.|.+|. ..+ .....||||+|.+-| .+++|+++.++.||.| ||+|.|.+..++. ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL---A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL---ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce---eEEE
Confidence 47999999999873 111 233479999999843 5689999999999999 9999999988773 6899
Q ss_pred EEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 73 LNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 73 v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
|.|+|+|.. +.|+|+|+..+|+..|. . +.+.++|.......-....|.+++.+.+.
T Consensus 508 f~V~D~d~~---~~d~figq~~lPv~~Lr-~---GYR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 508 FKVQDYDND---TQNDFAGQTCLPLPELK-S---GVRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEeCCCC---CCCCEEEEEEcchhHhh-C---CeeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999987 57999999999999973 2 55678887765444345678888887653
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-08 Score=108.65 Aligned_cols=122 Identities=20% Similarity=0.396 Sum_probs=100.0
Q ss_pred CcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeEEEeeccCCCCCCeee-ceeEEeecCCCCCCCCeEEEEEeeCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYYGQRRKTHTAVRDLNPTWN-EALEFNVGKPPQVFTDMFELNIFHDKAY 81 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~~~~~~T~~~~~tlnP~W~-e~f~f~v~~~~~~~~~~L~v~v~d~d~~ 81 (1061)
-|.|.|+|+.|++|+-+|. ....|.||.+++++..++|.+..+++||.|| +.|.|.|.+.++. ++.|.|.+.|+|..
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlq-deplqi~lld~dty 80 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQ-DEPLQIRLLDHDTY 80 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhc-cCCeeEEEeccccc
Confidence 3789999999999999986 4467999999999999999999999999998 7899999987654 68999999999999
Q ss_pred CCCCCCceeEEEEEECccceecC---------ceeeEEEeccccCCCCeeeeEEEEEEE
Q 001521 82 GPTTRNNFLGRIRLSSSQFVKKG---------EEALIYYPLEKKSLLSWIQGEVGLKIY 131 (1061)
Q Consensus 82 ~~~~~d~~lG~~~v~l~~l~~~~---------~~~~~w~~L~~~~~~~~~~G~l~l~~~ 131 (1061)
+.+|-||.+.++++.|.-.. ....-|||+.+.- ...+|||.+-+.
T Consensus 81 ---sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivk 134 (1169)
T KOG1031|consen 81 ---SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVK 134 (1169)
T ss_pred ---ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEE
Confidence 56899999999998764331 1223599988743 225788776543
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=110.89 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=83.8
Q ss_pred ceEEEEEEEeecCCCCCccc---CCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLPMKTV---NGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~---d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.+++++....+ +.....||||.|.+.+ ...||++..++.||.|||.|.|++.-|. ..|+|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 35799999999997531111 2233579999999533 2348898899999999999999999776 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecC
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
+|+|... +|+|+|+..||+..|..|- +..+|....
T Consensus 548 ~d~d~~~-----------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~ 582 (598)
T PLN02230 548 HEHDINE-----------KDDFGGQTCLPVSEIRQGI---HAVPLFNRK 582 (598)
T ss_pred EECCCCC-----------CCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence 9998765 5889999999999999987 356886554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-07 Score=108.61 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=92.2
Q ss_pred ceEEEEEEEeecCCCC---CcccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCcc-ccEEEEEEecCC-cEEEEE
Q 001521 644 VGTVELGVIGCKNLLP---MKTVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRW-NEQYTWKVYDPC-TVLALG 713 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~---~~~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~w-ne~~~~~v~~~~-~~l~i~ 713 (1061)
...|.|+|+++++|+. ....+.....||||.|.+.+ ...||+++.++.||.| ||.|.|.+..+. ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3479999999999731 11112233479999999533 3459999999999999 999999999776 899999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEec
Q 001521 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 714 v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~ 782 (1061)
|+|+|..+ .|++||+..||++.|..|- +..+|......... ..+|-+.+.+...
T Consensus 510 V~D~d~~~-----------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDT-----------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCC-----------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 99998765 4889999999999999887 35688655433222 2556666666543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-08 Score=115.34 Aligned_cols=92 Identities=23% Similarity=0.483 Sum_probs=81.3
Q ss_pred CceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEE-------EecccCCCCCCccccEEEEEEe-cCC----cEE
Q 001521 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWI-------RTRTVSDSLEPRWNEQYTWKVY-DPC----TVL 710 (1061)
Q Consensus 643 ~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~-------rT~~~~~~~~P~wne~~~~~v~-~~~----~~l 710 (1061)
+-..|-|.|+.|+++.++ |.+|-|||||+|++++... ||+++++|+||+|+|.|+|.|. ++| ..|
T Consensus 945 n~q~L~veVlhA~diipL---D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~ 1021 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPL---DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAML 1021 (1103)
T ss_pred cccchhhhhhcccccccc---CCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceE
Confidence 345778899999999997 9999999999999998764 9999999999999999999998 454 689
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEccccc
Q 001521 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLE 748 (1061)
Q Consensus 711 ~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 748 (1061)
.++|||+|-+. .+||-|++.+-|..+.
T Consensus 1022 ~FTVMDHD~L~-----------sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1022 HFTVMDHDYLR-----------SNDFAGEAFLELGDVP 1048 (1103)
T ss_pred EEEeeccceec-----------ccccchHHHHhhCCCC
Confidence 99999999987 3779999999988874
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=109.74 Aligned_cols=120 Identities=22% Similarity=0.330 Sum_probs=90.0
Q ss_pred EEEEEEEeecCCCCCcccC-CCCCCCcEEEEEeCCeE-----EEec-ccCCCCCCccccEEEEEEecCC-cEEEEEEEeC
Q 001521 646 TVELGVIGCKNLLPMKTVN-GKSTTDAYVVAKYASKW-----IRTR-TVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDS 717 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d-~~g~~dpyv~~~~~~~~-----~rT~-~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~ 717 (1061)
.|.|.|++++|+.+..... .+..+||||.|+..|-. .+|+ +..++.||.|+|.|+|++..|. +-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887632112 23468999999966543 3899 4557899999999999999887 8899999999
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
|..+ +|+|+|+..+|+++|..|- + -.||.......... -+|-+.+.++
T Consensus 697 d~~~-----------~ddF~GQ~tlP~~~L~~Gy--R-hVpL~~~~G~~~~~-asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----------KDDFIGQTTLPVSELRQGY--R-HVPLLSREGEALSS-ASLFVRIAIV 744 (746)
T ss_pred CCCC-----------cccccceeeccHHHhhCce--e-eeeecCCCCccccc-eeEEEEEEEe
Confidence 9876 6999999999999999887 3 35776543222222 4454555443
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.7e-08 Score=85.33 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=72.0
Q ss_pred EEEEEEEeeCCCCCcc---cCCCCCeEEEEEECC-eeeeeeeeecCCCCCcccceeEEeeccCCCCeEEEEEEeccCCCC
Q 001521 491 LRATVIEAQDILPPVA---ALKEASFTIKAQLGF-QVQKTKVSVTRNGTPSWNEDLLFVAAEPFTDQLSFTLENRQHKGS 566 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d---~~~~~dpyv~v~lg~-~~~kT~~~~~~t~nP~wne~f~f~v~~~~~~~L~i~V~D~d~~~d 566 (1061)
|.|+|..|+|+.-. + ..+.+||||.+++++ ++.||++. .||.|||+|.|.+. ....+.|.|||+.+...
T Consensus 1 L~I~V~~~RdvdH~-~~~~~~~~~etyV~IKved~~kaRTr~s----rnd~WnE~F~i~Vd--k~nEiel~VyDk~~~~~ 73 (109)
T cd08689 1 LTITITSARDVDHI-ASPRFSKRPETYVSIKVEDVERARTKPS----RNDRWNEDFEIPVE--KNNEEEVIVYDKGGDQP 73 (109)
T ss_pred CEEEEEEEecCccc-cchhhccCCCcEEEEEECCEEEEeccCC----CCCcccceEEEEec--CCcEEEEEEEeCCCCee
Confidence 67999999999877 5 467799999999986 48888865 49999999999983 45589999999877777
Q ss_pred ceeEEEEEeccccccc
Q 001521 567 VALGVTRVPLTAVERR 582 (1061)
Q Consensus 567 ~~lG~~~i~l~~l~~~ 582 (1061)
-.+|..-+.+++|...
T Consensus 74 ~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 74 VPVGLLWLRLSDIAEE 89 (109)
T ss_pred cceeeehhhHHHHHHH
Confidence 7999999999998643
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.7e-07 Score=108.04 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=84.0
Q ss_pred ceEEEEEEEeecCCCC--Cc-ccCCCCCCCcEEEEEeCC-----eEEEecccCCCCCCccccEEEEEEecCC-cEEEEEE
Q 001521 644 VGTVELGVIGCKNLLP--MK-TVNGKSTTDAYVVAKYAS-----KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGV 714 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~--~~-~~d~~g~~dpyv~~~~~~-----~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v 714 (1061)
...|.|+|+.++++.- -+ ..+.....||||.|.+.+ ...||+++.++.||.|||.|.|.+.-|. ..|+|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3579999999998531 11 112334579999999542 3459999999999999999999998776 8999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCC
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGS 764 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 764 (1061)
+|+|..+ .|+|||+..+|++.|..|- +..+|.....
T Consensus 531 ~d~D~~~-----------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g 566 (581)
T PLN02222 531 HEYDMSE-----------KDDFGGQTCLPVWELSQGI---RAFPLHSRKG 566 (581)
T ss_pred EECCCCC-----------CCcEEEEEEcchhhhhCcc---ceEEccCCCc
Confidence 9998765 4889999999999999887 3568865543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-07 Score=104.77 Aligned_cols=121 Identities=29% Similarity=0.440 Sum_probs=99.1
Q ss_pred ceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCeEEEecccCCCCCCcccc-EEEEEEecCC---cEEEEEEEeCCC
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNE-QYTWKVYDPC---TVLALGVFDSWG 719 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne-~~~~~v~~~~---~~l~i~v~d~~~ 719 (1061)
.|.|.|.|.-|++|+.|+. .....|.||.+++++..++|.+..+++||.||. -|.|.|.|.. ..|.|.++|+|.
T Consensus 2 pgkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CCcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 3789999999999999832 245689999999999999999999999999985 7889998643 789999999999
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEccccc----------CCcEEeeEEeceecCCCCCccccEEEEEEEEE
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLE----------TGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~ 780 (1061)
.+ .++.||+|.|.+..|- .|.+...|+|..+.- .|. +|+|.+-++..
T Consensus 80 ys-----------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkvd 136 (1169)
T KOG1031|consen 80 YS-----------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKVD 136 (1169)
T ss_pred cc-----------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEEe
Confidence 87 3779999999998862 345788999987642 232 38888766653
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=107.03 Aligned_cols=121 Identities=21% Similarity=0.365 Sum_probs=91.2
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eEEEeeccCCCCCCeee-ceeEEeecCCCCCCCCeEEEEEee
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHTAVRDLNPTWN-EALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~~~~tlnP~W~-e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
..|.|.|+.|+.|+. .+.|.+.|||.|.+-| ..++|.++.|++||+|| |.|+|.+.+++ -..|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence 568899999999974 4467788999999833 34556666899999999 99999999998 4789999999
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCC
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 136 (1061)
.|.+ +...|||++.+|+..+. . +.+-++|.......-.-..|.+.+...+..
T Consensus 1141 eDmf---s~~~FiaqA~yPv~~ik-~---GfRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1141 EDMF---SDPNFLAQATYPVKAIK-S---GFRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred cccc---CCcceeeeeecchhhhh-c---cceeeecccCchhhhhhhhheeeeEecccc
Confidence 9999 45679999999999863 3 334577766431111234566666666543
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.2e-07 Score=103.95 Aligned_cols=99 Identities=22% Similarity=0.448 Sum_probs=82.1
Q ss_pred eEEEEEEEeecCCCCCcccCCCCCCCcEEEEEe-----CCeEE-EecccCCCCCCccc-cEEEEEEecCC-cEEEEEEEe
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWI-RTRTVSDSLEPRWN-EQYTWKVYDPC-TVLALGVFD 716 (1061)
Q Consensus 645 g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~-rT~~~~~~~~P~wn-e~~~~~v~~~~-~~l~i~v~d 716 (1061)
-.|.|.|++|+.|+. .+.|.+.|||.|.+ +...+ +|.++.+.+||+|| |.|+|.|++|. ..|++.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 578999999999973 56777889999994 33344 44555678999999 99999999988 899999999
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEecee
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
.|.++. ++ |||++..|+..|..|- +..||+.
T Consensus 1141 eDmfs~----------~~-FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFSD----------PN-FLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccCC----------cc-eeeeeecchhhhhccc---eeeeccc
Confidence 999872 34 9999999999999886 4678853
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.7e-06 Score=101.74 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=92.2
Q ss_pred CcEEEEEEEEeeCCCCC----CC-CCCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEee
Q 001521 4 IQKLIVEVVDARNLLPK----DG-HGTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~----d~-~g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d 77 (1061)
.|.|.++|.+|+-+... +. ....||||+|.+++ ...|| .+.-||.|+|+|.+.+.... +..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec
Confidence 38899999999844322 11 12239999999988 56688 56669999999999998875 3579999987
Q ss_pred CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCCCCC
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVPTP 139 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~~~ 139 (1061)
. ..+||.+.+|+.+|+......+.||++.....+.....+|+++++|.+....+
T Consensus 83 ---~-----~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 136 (758)
T PLN02352 83 ---K-----CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELEP 136 (758)
T ss_pred ---C-----CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCc
Confidence 1 46899999999998765454778999877543332225999999999976653
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.2e-06 Score=99.31 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=91.7
Q ss_pred ceEEEEEEEeecCCCCC-cccCC-CCCCCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCC-cEEEEEEEeCCC
Q 001521 644 VGTVELGVIGCKNLLPM-KTVNG-KSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWG 719 (1061)
Q Consensus 644 ~g~l~v~v~~a~~L~~~-~~~d~-~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~v~d~~~ 719 (1061)
-|.|.++|++|+-+... ...+. ....||||.|.+++.++ || .+..||.|||.|.+++.++. +.++|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 48899999999733210 00011 11239999999999988 88 55669999999999999888 789999999
Q ss_pred CCCCCCCCCCCCCCCcceEEEEEEcccccCCcE-EeeEEeceecCCCCCccccEEEEEEEEEecC
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKV-YRNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~ 783 (1061)
+ ..+||++.||+.+|..|.. .+.|+++.....+-... ..|++.++|++-.
T Consensus 83 -~------------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 -K------------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAE 133 (758)
T ss_pred -C------------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhh
Confidence 2 4499999999999998865 78999998765433322 4899999998653
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.9e-06 Score=93.63 Aligned_cols=183 Identities=11% Similarity=0.087 Sum_probs=128.5
Q ss_pred eeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCC-CCCCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEc
Q 001521 362 SRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRG-DVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440 (1061)
Q Consensus 362 ~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~-~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 440 (1061)
...+|.++.+.+||.|-+.|.....-.. .+.|.+.++|.+.. .++...+|+|++...+.++...... ..-+.+
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~-vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~-----~~~l~~ 114 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEK-VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL-----TGPLLL 114 (529)
T ss_pred cccceeeeeccCCccceeeechhheeee-eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh-----hhhhhc
Confidence 3568999999999999999988876666 88999999997652 1356789999999999988874211 111122
Q ss_pred cC-CCccccceEEEEEEeccCCCCCCCccccCCCCCcccccccccCCceEEEEEEEEEeeCCCCCcccCCCCCeEEEEEE
Q 001521 441 EG-GGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIEAQDILPPVAALKEASFTIKAQL 519 (1061)
Q Consensus 441 ~~-~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~V~V~~a~~L~~~~d~~~~~dpyv~v~l 519 (1061)
+. .....|.|.+...-. .+ ... ...-..+|++|... |..+++|||..+.-
T Consensus 115 ~~~~~~~~g~iti~aee~-----------~~---------------~~~--~~~~~~~~~~ld~k-d~f~ksd~~l~~~~ 165 (529)
T KOG1327|consen 115 KPGKNAGSGTITISAEED-----------ES---------------DND--VVQFSFRAKNLDPK-DFFSKSDPYLEFYK 165 (529)
T ss_pred ccCccCCcccEEEEeecc-----------cc---------------cCc--eeeeeeeeeecCcc-cccccCCcceEEEE
Confidence 22 223456666633210 00 001 23334568999998 99999999998865
Q ss_pred --C----CeeeeeeeeecCCCCCcccceeEEee----ccCCCCeEEEEEEeccC-CCCceeEEEEEecccccc
Q 001521 520 --G----FQVQKTKVSVTRNGTPSWNEDLLFVA----AEPFTDQLSFTLENRQH-KGSVALGVTRVPLTAVER 581 (1061)
Q Consensus 520 --g----~~~~kT~~~~~~t~nP~wne~f~f~v----~~~~~~~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~ 581 (1061)
+ ...++|++.+ ++++|.|.... ... ....+..+.+.+||++. ++++++|++..++.++..
T Consensus 166 ~~~d~s~~~~~~tEv~~-n~l~p~w~~~~-i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 166 RVDDGSTQMLYRTEVVK-NTLNPQWAPFS-ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred ecCCCceeeccccceec-cCCCCcccccc-cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 2 2577889888 99999998732 211 11223578899999999 888999999999998864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-06 Score=99.25 Aligned_cols=109 Identities=21% Similarity=0.282 Sum_probs=88.1
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
+|+|.|-|..|++|.--..+.-+||||+..+-- .+.||+++.+|.||.|||.+.+.-...+....++|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 689999999999996555577899999999832 578999999999999999998874443323357899999999
Q ss_pred CCCCCCCCCceeEEEEEECccceecCceeeEEEecccc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 116 (1061)
+.. ..+.|||.+.++|.++-...+ ...||+|...
T Consensus 1603 ~~~---~en~~lg~v~i~L~~~~l~kE-~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGL---LENVFLGGVNIPLLKVDLLKE-SVGWYNLGAC 1636 (1639)
T ss_pred cce---eeeeeeeeeecchhhcchhhh-hcceeecccc
Confidence 988 678999999999998544333 3369998764
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0032 Score=69.80 Aligned_cols=238 Identities=16% Similarity=0.235 Sum_probs=152.1
Q ss_pred EEEEEEEeecCCC--CCCcEEEEEECCeeeeeccccCCCCceeeeEEEEecc-------CCCCCCeEEEEEEcCCCCCCC
Q 001521 337 LFVRVVKARFLPT--KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRD-------SPESSSFLEVSVWDPPRGDVA 407 (1061)
Q Consensus 337 L~V~v~~a~~L~~--~~dPyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~-------~~~~~~~L~i~V~d~d~~~~~ 407 (1061)
+.|.|+++++.+. ...-+|+.+++|....|..+..+..|.||..+.+.++ ..+ ..+|++++|-.|.. -
T Consensus 2 ivl~i~egr~F~~~~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~-~tPiKl~c~a~~~~--~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRPRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQ-RTPIKLQCFAVDGS--T 78 (340)
T ss_pred EEEEEecccCCCCCCCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhcc-CCceEEEEEEecCC--C
Confidence 6789999999987 4556788899999999999999999999999999853 233 78899999987721 2
Q ss_pred CCCCeeEEEEEECcccCCCCCCCCCCCCeeEEccCC----CccccceEEEEEEeccCCC---CC--------CCccccCC
Q 001521 408 APPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGG----GAYSGDLMLATWVGTQADD---SF--------PDAWKTDT 472 (1061)
Q Consensus 408 ~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~----~~~~G~i~l~~~~~~~~d~---~~--------~~~~~~~~ 472 (1061)
+..+.||++.+||..+......+....+.||+|-+. .+.+-+|.+.+.+-..... .+ +.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999998822222234578899999876 2234567776655433221 00 00000000
Q ss_pred CCCc----------ccccccc-------cCCceEEEEEEEEEeeCCCCCc-----ccCCCCCeEEEEEECCeeeeeeeee
Q 001521 473 AGNV----------NSKAKVY-------VSPKLWYLRATVIEAQDILPPV-----AALKEASFTIKAQLGFQVQKTKVSV 530 (1061)
Q Consensus 473 ~~~~----------~~~~~~~-------~~~~l~~L~V~V~~a~~L~~~~-----d~~~~~dpyv~v~lg~~~~kT~~~~ 530 (1061)
+... ......+ ....+..|.|++..|+||.... +..+....|....+-+..+.|..-.
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F~ 238 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPFK 238 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeecc
Confidence 0000 0000000 0234556999999999997651 1113356677777766666666554
Q ss_pred cCCCCCcc--cceeEEeeccC---------CCCeEEEEEEeccCCCCceeEEEEEeccccccc
Q 001521 531 TRNGTPSW--NEDLLFVAAEP---------FTDQLSFTLENRQHKGSVALGVTRVPLTAVERR 582 (1061)
Q Consensus 531 ~~t~nP~w--ne~f~f~v~~~---------~~~~L~i~V~D~d~~~d~~lG~~~i~l~~l~~~ 582 (1061)
...+|.| ++...+.+... ....|.|.++- .+..||.+.|++..+...
T Consensus 239 -~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 239 -SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred -ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----CCcEEEEEEEEhhhccCC
Confidence 5667755 33222433211 22367777774 577899999999998643
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.7e-05 Score=95.58 Aligned_cols=102 Identities=21% Similarity=0.270 Sum_probs=83.4
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEEC-----CeeeeeeeeecCCCCCcccceeEEee---ccCCCCeEEEEEEec
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLG-----FQVQKTKVSVTRNGTPSWNEDLLFVA---AEPFTDQLSFTLENR 561 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-----~~~~kT~~~~~~t~nP~wne~f~f~v---~~~~~~~L~i~V~D~ 561 (1061)
.|.|.|..|++|+-. ..+..+||||+.++. ..+.||+++. +|.||.|||.+.+.- ....+..|.++||..
T Consensus 1525 ~LtImV~H~K~L~~L-qdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1525 TLTIMVMHAKGLALL-QDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred eEEEEhhhhcccccc-cCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 399999999999776 677889999999995 2467888888 999999999887652 122245899999998
Q ss_pred cC-CCCceeEEEEEeccccccccccccccceEEEccc
Q 001521 562 QH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 562 d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
++ ..+.++|.+.|+|.++...++ ...||.|..
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLGA 1635 (1639)
T ss_pred cceeeeeeeeeeecchhhcchhhh----hcceeeccc
Confidence 88 889999999999999876533 458999965
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.63 E-value=9e-05 Score=68.00 Aligned_cols=98 Identities=17% Similarity=0.302 Sum_probs=75.4
Q ss_pred EEEEEEeecCCC------------------CCCcEEEEEE----CCeeeeeccccCCCCceeeeEEEEecc--------C
Q 001521 338 FVRVVKARFLPT------------------KGSPVVKIAV----ANSRVESKPARRTSCFEWDQTFAFGRD--------S 387 (1061)
Q Consensus 338 ~V~v~~a~~L~~------------------~~dPyv~v~~----~~~~~kT~~~~~t~nP~Wne~f~f~v~--------~ 387 (1061)
.|.|++|.+|.. ..++||++.+ ++...+|+++-++=-|.|+..++|++. +
T Consensus 2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge 81 (143)
T cd08683 2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGE 81 (143)
T ss_pred eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCc
Confidence 466677776652 5689999985 337889999999999999999999965 1
Q ss_pred -------CCCCCeEEEEEEcCCCCCC-------CCCCCeeEEEEEECcccCCCCCCCCCCCCeeEEc
Q 001521 388 -------PESSSFLEVSVWDPPRGDV-------AAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440 (1061)
Q Consensus 388 -------~~~~~~L~i~V~d~d~~~~-------~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L 440 (1061)
+. ...+.++||+.+.+.. -.+|-.||.+.|++.+|..+ ......||++
T Consensus 82 ~~sLAElLe-~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~----rsGitGW~pi 143 (143)
T cd08683 82 AISLAELLE-SAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK----RSGITGWYPI 143 (143)
T ss_pred cccHHHHhh-cceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc----ccCccccccC
Confidence 22 7789999999765321 23566899999999999985 5566788875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.008 Score=66.73 Aligned_cols=236 Identities=9% Similarity=0.163 Sum_probs=154.9
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEECCeeeeeeeeecCCCCCcccceeEEeeccC-------CCCeEEEEEEeccC
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP-------FTDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~-------~~~~L~i~V~D~d~ 563 (1061)
+.|.|++|+|.+.. ..-...|..+++++...|..+. .+..|.||..+.+.+... ....|++++|-.+.
T Consensus 2 ivl~i~egr~F~~~----~~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~ 76 (340)
T PF12416_consen 2 IVLSILEGRNFPQR----PRHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDG 76 (340)
T ss_pred EEEEEecccCCCCC----CCccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecC
Confidence 57889999999865 3356789999999999999777 899999999887765321 23489999999884
Q ss_pred --CCCceeEEEEEecccc---ccccccccccceEEEcccCCCccCCccceEEEEEEeeCCcccccCccc-----ccCC--
Q 001521 564 --KGSVALGVTRVPLTAV---ERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAH-----VCSD-- 631 (1061)
Q Consensus 564 --~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~~~~~~~~~~~-----~~~d-- 631 (1061)
+..+.+|.+.++|... ..+ ......+||+|-+.+.+-.+..-+|.+.+.+............ ...+
T Consensus 77 ~~~~re~iGyv~LdLRsa~~~~~~--~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~ 154 (340)
T PF12416_consen 77 STGKRESIGYVVLDLRSAVVPQEK--NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQ 154 (340)
T ss_pred CCCcceeccEEEEEcccccccccc--ccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCccc
Confidence 8899999999999998 322 1235789999988433333456678888877643221000000 0000
Q ss_pred ---------Cchhhh-----------ccC----CCCceEEEEEEEeecCCCCCcccC---CCCCCCcEEEEEeCCeEEEe
Q 001521 632 ---------YRPTAR-----------QLW----KPPVGTVELGVIGCKNLLPMKTVN---GKSTTDAYVVAKYASKWIRT 684 (1061)
Q Consensus 632 ---------~~~~~~-----------~~~----~~~~g~l~v~v~~a~~L~~~~~~d---~~g~~dpyv~~~~~~~~~rT 684 (1061)
..+..- |+- ..+.-.|.|++-.|.+|..+.-.. ..+.+.-|....+-+.-+.|
T Consensus 155 ~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~ 234 (340)
T PF12416_consen 155 GHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTT 234 (340)
T ss_pred CCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEe
Confidence 000000 000 123456788888898886541111 11234555566666667888
Q ss_pred cccCCCCCCcc--ccEEEEEEec----------CCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccC
Q 001521 685 RTVSDSLEPRW--NEQYTWKVYD----------PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET 749 (1061)
Q Consensus 685 ~~~~~~~~P~w--ne~~~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 749 (1061)
...+...+|.| ++...+.++. ....|.|.++.. +..||.+.|++..+-.
T Consensus 235 ~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g----------------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 235 EPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG----------------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC----------------CcEEEEEEEEhhhccC
Confidence 88888888877 3444466652 225677887763 5589999999999854
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00018 Score=86.03 Aligned_cols=88 Identities=17% Similarity=0.323 Sum_probs=73.9
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEE-EEECCeEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCC
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVV-IDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYG 82 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~-v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~ 82 (1061)
.|...+++++|+ ++ ..|||.. +++|.+.+||.+.++|+||+||+...|.+.... ....++.|||.+.+
T Consensus 53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~- 121 (644)
T PLN02964 53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETNRL- 121 (644)
T ss_pred cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecCCC-
Confidence 478899999988 33 3588655 567889999999999999999999999998876 35579999999999
Q ss_pred CCCCCceeEEEEEECccceecC
Q 001521 83 PTTRNNFLGRIRLSSSQFVKKG 104 (1061)
Q Consensus 83 ~~~~d~~lG~~~v~l~~l~~~~ 104 (1061)
++++.+|.+++++.++...+
T Consensus 122 --s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 --SKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred --CHHHhhhheeecHhhccHHH
Confidence 78999999999988865543
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00036 Score=75.40 Aligned_cols=109 Identities=20% Similarity=0.338 Sum_probs=86.3
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEE-eCCeEE----EecccCCCCCCccccEEEEEEecCCcEEEEEEEe
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK-YASKWI----RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFD 716 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~-~~~~~~----rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d 716 (1061)
...|.|+|.|++|++|.+ |. .....++|||.|+ +++..+ +|+...+|++|.+-.+..|.-.-+...|.++||-
T Consensus 266 d~~g~l~vEii~ar~l~~-k~-~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVV-KP-GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccc-cC-CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence 457899999999999987 21 1233689999999 444332 8889999999999889999888888999999996
Q ss_pred CCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCc-EEeeEEeceec
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK-VYRNTYPLLLL 762 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 762 (1061)
.-.-. +++.|+|-+.|-+.+|.... ....||+|..-
T Consensus 344 dygRm----------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 DYGRM----------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccc----------chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 43322 47889999999999998766 56789998654
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00019 Score=65.89 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=77.3
Q ss_pred EEEEEEEeeCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeccCCCCCCeeeceeEEeecC----C--
Q 001521 7 LIVEVVDARNLLPKDG-------------HGTSSPYVVIDY----YGQRRKTHTAVRDLNPTWNEALEFNVGK----P-- 63 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~-------------~g~~dPyv~v~~----~~~~~~T~~~~~tlnP~W~e~f~f~v~~----~-- 63 (1061)
|.|.|++|.+|..... .=.-++||++.+ ++...+|+++.++.-|.|+-+++|.+.- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678888888864321 113489999986 4478999999999999999999998761 0
Q ss_pred ------CCCCCCeEEEEEeeCCCCCC-------CCCCceeEEEEEECccceecCceeeEEEec
Q 001521 64 ------PQVFTDMFELNIFHDKAYGP-------TTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 64 ------~~~~~~~L~v~v~d~d~~~~-------~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 113 (1061)
+.+...++.++||+...-+. ..+|-.||.+.||+.+|+....-...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11124678999999875422 124558999999999987764444459874
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00041 Score=82.96 Aligned_cols=87 Identities=10% Similarity=0.153 Sum_probs=74.1
Q ss_pred ccEEEEEEEEeecCCCCCCcEEE-EEECCeeeeeccccCCCCceeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCe
Q 001521 334 MHYLFVRVVKARFLPTKGSPVVK-IAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGF 412 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~~~dPyv~-v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~ 412 (1061)
.++..+++++|+ ..-.|+|.. +++|.+++||.+.++|+||+||+...|.+.... .....+.|||++. +..+++
T Consensus 53 ~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~s~n~l 126 (644)
T PLN02964 53 SGIALLTLVGAE--MKFKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG-PHLARISVFETNR---LSKNTL 126 (644)
T ss_pred cCeEEEEeehhh--hccCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC-cceEEEEEEecCC---CCHHHh
Confidence 678889999997 233577665 566779999999999999999999999988776 6778999999998 899999
Q ss_pred eEEEEEECcccCCC
Q 001521 413 LGGICFDVTEIPLR 426 (1061)
Q Consensus 413 lG~~~i~L~~l~~~ 426 (1061)
+|.|.+||.++..+
T Consensus 127 v~~~e~~~t~f~~k 140 (644)
T PLN02964 127 VGYCELDLFDFVTQ 140 (644)
T ss_pred hhheeecHhhccHH
Confidence 99999999887763
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00026 Score=76.46 Aligned_cols=110 Identities=24% Similarity=0.436 Sum_probs=88.6
Q ss_pred CCCCcEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEC--C---eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 1 MAAIQKLIVEVVDARNLLPKDG-HGTSSPYVVIDYY--G---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 1 ~~~~~~L~V~v~~a~~L~~~d~-~g~~dPyv~v~~~--~---~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
|..+|.|.|.|++|++|..+.. ...++|||+|.+- + .+.+|+...+|++|-+.+...|.-..+. ..|.+.
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~----k~Lq~t 340 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPG----KYLQGT 340 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCc----cEEEEE
Confidence 7789999999999999987754 4478999999982 2 5789999999999999888888777664 789999
Q ss_pred Eee-CCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccC
Q 001521 75 IFH-DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117 (1061)
Q Consensus 75 v~d-~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 117 (1061)
||- +.++ -++.|+|.+.+-+++|-........||+|.+..
T Consensus 341 v~gdygRm---d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 341 VWGDYGRM---DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred Eecccccc---chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 997 4566 457899999999999754443556799887643
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00073 Score=57.54 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=65.2
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEE--EEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCC
Q 001521 8 IVEVVDARNLLPKDG-HGTSSPYVV--IDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGP 83 (1061)
Q Consensus 8 ~V~v~~a~~L~~~d~-~g~~dPyv~--v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~ 83 (1061)
-|+|+.+++|.-... +..+.-|++ +.+.+ ..++|++.....||.+.|+|.|.+...... +-.|.|.|+. ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~-~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQ-TVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhcc-ceEEEEEeec--cC--
Confidence 378889999853322 223333655 34444 689999999999999999999998876532 5688899988 33
Q ss_pred CCCCceeEEEEEECccc
Q 001521 84 TTRNNFLGRIRLSSSQF 100 (1061)
Q Consensus 84 ~~~d~~lG~~~v~l~~l 100 (1061)
.|...||.+.+.++++
T Consensus 77 -~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 77 -PRKRTIGECSLSLRTL 92 (103)
T ss_pred -CccceeeEEEeecccC
Confidence 5688999999999985
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0026 Score=54.32 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=67.7
Q ss_pred EEEEEEeeCCCCCcccCCCCCeEEEEEEC-C--eeeeeeeeecCCCCCcccceeEEeeccCC--CCeEEEEEEeccCCCC
Q 001521 492 RATVIEAQDILPPVAALKEASFTIKAQLG-F--QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQHKGS 566 (1061)
Q Consensus 492 ~V~V~~a~~L~~~~d~~~~~dpyv~v~lg-~--~~~kT~~~~~~t~nP~wne~f~f~v~~~~--~~~L~i~V~D~d~~~d 566 (1061)
-|+|++|+||.-...-+..+..|++-.+- . -..||.... +..||+|.|+|.|.+.... .-.|.|.|+. ...+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCcc
Confidence 47889999996441334456678776552 3 345565555 8999999999999876444 3377788886 22788
Q ss_pred ceeEEEEEeccccccccccccccceEEE
Q 001521 567 VALGVTRVPLTAVERRVDDRKVASRWFT 594 (1061)
Q Consensus 567 ~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 594 (1061)
+.||.|.+.++++... ...+|.+
T Consensus 80 e~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 80 RTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred ceeeEEEeecccCCHH-----Hhhhhhc
Confidence 8999999999988642 3456654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.024 Score=55.18 Aligned_cols=130 Identities=14% Similarity=0.229 Sum_probs=91.7
Q ss_pred CCcEEEEEEEEeeCCCCCCCC--CCCCc--EEEEEECCeEEEeeccCCCCCCeeeceeEEeecCCC----------CCCC
Q 001521 3 AIQKLIVEVVDARNLLPKDGH--GTSSP--YVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP----------QVFT 68 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~~--g~~dP--yv~v~~~~~~~~T~~~~~tlnP~W~e~f~f~v~~~~----------~~~~ 68 (1061)
....|+++|..++-....-.. +..+. ++-+.+++|+|+|+.+..+.+|.++|.|-|.+.... ....
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 345689999998876433211 33333 555667999999999999999999999999987653 1124
Q ss_pred CeEEEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCe---eeeEEEEEEEEEeCC
Q 001521 69 DMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW---IQGEVGLKIYYVDIV 136 (1061)
Q Consensus 69 ~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~---~~G~l~l~~~~~~~~ 136 (1061)
+.+++.|---|.. +...++|...++-..++..+... .+++++-.+.... ..|-|.+++++++..
T Consensus 87 ~pihivli~~d~~---~~~~Lv~s~~ldWR~vL~s~~~~-~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPS---GETTLVGSHFLDWRKVLCSGNGS-TSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCC---CceEeeeeceehHHHHhccCCCc-cceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6788888888877 34589999999988876655421 1444333333333 679999999999853
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0031 Score=68.77 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=90.4
Q ss_pred EEEEEEEeecCCCCCcccCCCCCCCcEEEEEe---C--CeEEEecccCCCCCCccccEEEEEEec---CC---------c
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---A--SKWIRTRTVSDSLEPRWNEQYTWKVYD---PC---------T 708 (1061)
Q Consensus 646 ~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~--~~~~rT~~~~~~~~P~wne~~~~~v~~---~~---------~ 708 (1061)
.|++.|++|.+++.. .+....|-|+.+.+ + .+..+|.+++++.+|.|+|.|.+.+.. .+ .
T Consensus 368 elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred HhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 567788888887542 22334678888872 2 234599999999999999999999974 22 3
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccccCCcEEeeEEeceecCCCCCc-cccEEEEEEEEE
Q 001521 709 VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMT-KMGEIEVAVRFI 780 (1061)
Q Consensus 709 ~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~-~~G~i~l~~~f~ 780 (1061)
-+.|++|....+. ..|.++|.+.|.|..|++.......|+|++. ++ ..|.|++.++..
T Consensus 445 g~kfeifhkggf~----------rSdkl~gt~nikle~Len~cei~e~~~l~DG----RK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN----------RSDKLTGTGNIKLEILENMCEICEYLPLKDG----RKAVGGKLEVKVRIR 503 (523)
T ss_pred CeeEEEeeccccc----------cccceeceeeeeehhhhcccchhhceecccc----ccccCCeeEEEEEEe
Confidence 5899999987765 2599999999999999988877888999753 22 238898888885
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0036 Score=68.26 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=92.0
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE---C--CeEEEeeccCCCCCCeeeceeEEeecCCCCC--------CCCeE
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY---Y--GQRRKTHTAVRDLNPTWNEALEFNVGKPPQV--------FTDMF 71 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~---~--~~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~--------~~~~L 71 (1061)
..|.+.|+++.+++.....---|-|+++.+ + .++-+|.++++|.+|.++|.|.+.+...... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 356677888887754432223467999887 2 2678999999999999999999988773322 12457
Q ss_pred EEEEeeCCCCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeCC
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDIV 136 (1061)
Q Consensus 72 ~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 136 (1061)
.|++|+...+. ++|.++|.+.+.+..| +..-+....++|.+.. ..+.|.|.+++......
T Consensus 447 kfeifhkggf~--rSdkl~gt~nikle~L-en~cei~e~~~l~DGR--K~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 447 KFEIFHKGGFN--RSDKLTGTGNIKLEIL-ENMCEICEYLPLKDGR--KAVGGKLEVKVRIRQPI 506 (523)
T ss_pred eEEEeeccccc--cccceeceeeeeehhh-hcccchhhceeccccc--cccCCeeEEEEEEeccc
Confidence 89999998774 6799999999999875 3333334567776532 34689999999887643
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.054 Score=52.85 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHHHHHHHHHHHc
Q 001521 851 MRKVRANWFRIINVLAGVIDILRWADDTRSWKNPTATILVHALLVMLVWF 900 (1061)
Q Consensus 851 ~~~~~~N~~Rl~~~~~~~~~~~~~i~~l~~W~~P~~T~~~~~~~~~~~~~ 900 (1061)
.++++.=..|++.+++.+-..+..++.+++|++|..|.+++++.++++.-
T Consensus 61 ydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 61 YDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 34555556667777778888899999999999999999999887776554
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.15 Score=49.85 Aligned_cols=129 Identities=18% Similarity=0.176 Sum_probs=84.8
Q ss_pred CceEEEEEEEEEeeCCCCCcc-cCCCCCeE--EEEEECCeeeeeeeeecCCCCCcccceeEEeeccCC------------
Q 001521 486 PKLWYLRATVIEAQDILPPVA-ALKEASFT--IKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPF------------ 550 (1061)
Q Consensus 486 ~~l~~L~V~V~~a~~L~~~~d-~~~~~dpy--v~v~lg~~~~kT~~~~~~t~nP~wne~f~f~v~~~~------------ 550 (1061)
+...||.+.|..++-...-.+ ..+..+.. +-+.+++|.++|+.+. -+.+|.|+|.|.|.+....
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhc
Confidence 445579999999886543201 11333444 4445589999999998 8999999999999886553
Q ss_pred -CCeEEEEEEeccC-CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEeeC
Q 001521 551 -TDQLSFTLENRQH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFDG 617 (1061)
Q Consensus 551 -~~~L~i~V~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l~~ 617 (1061)
.+.+.+.|.-.|. +...++|.-.++...+....... ...-+.|.+......-..|-+.+++.+-+
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~--~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS--TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCc--cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 2367777776665 55689999999999887543211 12224454432233346788888887643
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.036 Score=66.12 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEE-C------CeeeeeeeeecCCCCCcccc-eeEEe-eccCCCCeEEEEEEe
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQL-G------FQVQKTKVSVTRNGTPSWNE-DLLFV-AAEPFTDQLSFTLEN 560 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~l-g------~~~~kT~~~~~~t~nP~wne-~f~f~-v~~~~~~~L~i~V~D 560 (1061)
.|.|+|++|.-|..+ + ...||+|.+ | ...+||+++..++.||+|+| .|.|. |..|.-..|+|.||+
T Consensus 704 t~sV~VISgqFLSdr-k----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDR-K----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eEEEEEEeeeecccc-c----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 499999999999765 3 347999998 3 25678888887899999998 47774 556666789999998
Q ss_pred ccCCCCceeEEEEEecccccc
Q 001521 561 RQHKGSVALGVTRVPLTAVER 581 (1061)
Q Consensus 561 ~d~~~d~~lG~~~i~l~~l~~ 581 (1061)
. ...+||+-.+|+..|..
T Consensus 779 E---ggK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 779 E---GGKFIGQRILPVDGLNA 796 (1189)
T ss_pred c---CCceeeeeccchhcccC
Confidence 5 57899999999998864
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.14 Score=50.71 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=64.6
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|+|+++.++.-.+ .+|-||.+.+ |++ ...|+.+.. .++.|||.+.|++.-.+...+..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 56899999999987543 4688999876 443 234554443 6799999999988766555578999999997
Q ss_pred CCCCC-CCCCceeEEEEEECcc
Q 001521 79 KAYGP-TTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~-~~~d~~lG~~~v~l~~ 99 (1061)
..... ......+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 64210 0112468999998876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=51.10 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=63.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|+|+.+.+|... ....+-||.+.+ |++ ...|+.+.-+.++.|||.+.|++.-.++..+..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4689999999999762 234667888755 553 34565555556799999999987665554478999999997
Q ss_pred CCCCC-------------CCCCceeEEEEEECcc
Q 001521 79 KAYGP-------------TTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~-------------~~~d~~lG~~~v~l~~ 99 (1061)
..... .+.+..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 54310 0123577777777665
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=48.57 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=59.7
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|.|+.+.++... ..+|.||++.+ |++.. .|+.+. ..++.|||-+.|++. .|.+..|.|+||+.
T Consensus 10 ~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 10 LRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred eEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 89999999998754 34688988876 55433 344333 367999999888764 34466999999997
Q ss_pred cC-C----CCceeEEEEEecccc
Q 001521 562 QH-K----GSVALGVTRVPLTAV 579 (1061)
Q Consensus 562 d~-~----~d~~lG~~~i~l~~l 579 (1061)
.. . ....+|.+.++|-+-
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 64 1 225689999887763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.42 Score=48.32 Aligned_cols=84 Identities=18% Similarity=0.237 Sum_probs=58.8
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|+|+.+.+|... ....+.||++.| |++.. .|+... ...++.|||.+.|++. .|.+..|.|.||+.
T Consensus 10 f~i~i~~~~~~~~~---~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 10 FSITLHKISNLNAA---ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred EEEEEEEeccCccC---CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 89999999999863 234677888766 65433 444333 3567999999888764 44566999999987
Q ss_pred cC-C----------------CCceeEEEEEeccc
Q 001521 562 QH-K----------------GSVALGVTRVPLTA 578 (1061)
Q Consensus 562 d~-~----------------~d~~lG~~~i~l~~ 578 (1061)
.. . ....||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 54 1 13577877777665
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.37 Score=47.98 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=64.1
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~ 78 (1061)
..++|++....++...+ ....+-||.+.+ |++ ...|.......++.|||...|++.-.++..+..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 46788899988876522 234667777765 443 23444443336899999999987655544468999999998
Q ss_pred CCCCCCCCCceeEEEEEECcc
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~v~l~~ 99 (1061)
+.... .++..||.+.++|-+
T Consensus 87 ~~~~~-~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGS-KKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCC-CcceEEEEEeEEeEc
Confidence 76510 135789999999877
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.13 Score=54.34 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=79.8
Q ss_pred CCcEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 3 AIQKLIVEVVDARNLLPKDG--HGTSSPYVVIDYYGQ-RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 3 ~~~~L~V~v~~a~~L~~~d~--~g~~dPyv~v~~~~~-~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..|.|.+++.++++|+-... +-+-+-||++..+.+ +.||.+......=.|.|+|+..+.+. ..+.+-||.|+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 45899999999999965432 456788999999874 66777777777778999999998874 56889999998
Q ss_pred CCCCCCCCceeEEEEEECccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEeC
Q 001521 80 AYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 135 (1061)
.. .++++.-..-+.+..+..... +.-+.|.- +.+|.+-+++.+.+.
T Consensus 124 pq---~RHKLC~~g~l~~~~v~rqsp--d~~~Al~l-----ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 124 PQ---RRHKLCHLGLLEAFVVDRQSP--DRVVALYL-----EPRGQPPLRLPLADP 169 (442)
T ss_pred ch---hhccccccchhhhhhhhhcCC--cceeeeec-----ccCCCCceecccCCh
Confidence 77 455543222233333222222 22233322 347888888887763
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.41 Score=47.63 Aligned_cols=92 Identities=16% Similarity=0.155 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEE
Q 001521 23 HGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLS 96 (1061)
Q Consensus 23 ~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~ 96 (1061)
...+|-||++.+ ++. ...|+.+.-+..+.|||...|++.-.+...+..|.|+|||.+.. ++...+|.+.++
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~---~~~~~vg~~~~~ 103 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT---GKAVPFGGTTLS 103 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC---CCceEEEEEEEe
Confidence 345788999876 443 23566665566789999999998776655578999999998765 356789999999
Q ss_pred CccceecCceeeEEEeccccCCCCeeeeEEEEEEEEEe
Q 001521 97 SSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 97 l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 134 (1061)
|-+- .+ ++ .+|...+.+....
T Consensus 104 lFd~--~g-----~L----------r~G~~~l~lw~~~ 124 (159)
T cd08397 104 LFNK--DG-----TL----------RRGRQKLRVWPDV 124 (159)
T ss_pred eECC--CC-----cE----------ecCCEEEEEEeCC
Confidence 8762 11 22 1777777777444
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.22 Score=52.77 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=85.2
Q ss_pred CCceEEEEEEEeecCCCCCcccCCCCCCCcEEEEEeCCe-EEEecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCC
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGI 720 (1061)
Q Consensus 642 ~~~g~l~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~ 720 (1061)
...|.|.++++.++||.-.. ...+-..+-||++.++.+ ..||.+......-.|.|.|..++.. .+++.+-||.|+.-
T Consensus 48 s~tGiL~~H~~~GRGLr~~p-~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTP-QQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccCh-hccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCch
Confidence 34699999999999995421 111335789999998765 4578777777778899999988763 46899999999864
Q ss_pred CCCCCCCCCCCCCCcc--eEEEEEEcccccCCcEEeeEEeceecCCCCCccccEEEEEEEEEecCCchhhhhhcCCCCCC
Q 001521 721 FEGENGSMETTRPDCR--IGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHVYSQPLLP 798 (1061)
Q Consensus 721 ~~~~~~~~~~~~~d~~--lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f~~~~~~~~~~~~~~~p~~p 798 (1061)
. ++.+ +| .|.+..+..... .+-+.|+. ...|.+.+++.|. +..+.|-+..+|
T Consensus 126 ~-----------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~l------ePrgq~~~r~~~~------Dp~av~rR~~~P 179 (442)
T KOG1452|consen 126 R-----------RHKLCHLG--LLEAFVVDRQSP-DRVVALYL------EPRGQPPLRLPLA------DPEAVTRRTVNP 179 (442)
T ss_pred h-----------hccccccc--hhhhhhhhhcCC-cceeeeec------ccCCCCceecccC------ChHHHhhcccCc
Confidence 3 2333 44 333333322110 22333322 2348999999997 666666677777
Q ss_pred Cc
Q 001521 799 LM 800 (1061)
Q Consensus 799 ~~ 800 (1061)
+.
T Consensus 180 rl 181 (442)
T KOG1452|consen 180 RL 181 (442)
T ss_pred cc
Confidence 64
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.19 Score=60.37 Aligned_cols=85 Identities=16% Similarity=0.278 Sum_probs=68.2
Q ss_pred ccEEEEEEEEeecCCC-CCCcEEEEEECC-------eeeeecccc-CCCCceeee-EEEEeccCCCCCCeEEEEEEcCCC
Q 001521 334 MHYLFVRVVKARFLPT-KGSPVVKIAVAN-------SRVESKPAR-RTSCFEWDQ-TFAFGRDSPESSSFLEVSVWDPPR 403 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~-~~dPyv~v~~~~-------~~~kT~~~~-~t~nP~Wne-~f~f~v~~~~~~~~L~i~V~d~d~ 403 (1061)
.+.|.|+|+++.=|.. +...||+|..-| ..+||++.. ++.||+|+| .|.|...-+.+-..|.|-|++.
T Consensus 702 A~t~sV~VISgqFLSdrkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE-- 779 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE-- 779 (1189)
T ss_pred EeeEEEEEEeeeeccccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc--
Confidence 4578899999998876 888999999866 357888765 489999987 5888744333378999999997
Q ss_pred CCCCCCCCeeEEEEEECcccCC
Q 001521 404 GDVAAPPGFLGGICFDVTEIPL 425 (1061)
Q Consensus 404 ~~~~~~d~~lG~~~i~L~~l~~ 425 (1061)
...+||.-.+++..+..
T Consensus 780 -----ggK~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 780 -----GGKFIGQRILPVDGLNA 796 (1189)
T ss_pred -----CCceeeeeccchhcccC
Confidence 36799999999887766
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.1 Score=40.55 Aligned_cols=124 Identities=14% Similarity=0.238 Sum_probs=80.3
Q ss_pred CcEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---EEEeecc-CCCCCCeeeceeEEeecCCC----C-CCCCeEEEE
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ---RRKTHTA-VRDLNPTWNEALEFNVGKPP----Q-VFTDMFELN 74 (1061)
Q Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~~~~---~~~T~~~-~~tlnP~W~e~f~f~v~~~~----~-~~~~~L~v~ 74 (1061)
+-.+.|+|++..+++. ...--||+...++. ...|... ..+-.-.|||+|.+.+.-.. . .....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3567899999999866 12334555544443 2344443 22334789999998764321 1 224678999
Q ss_pred EeeCCCCCCCCCCceeEEEEEECccceecC-ceeeEEEeccccCCCCeeeeEEEEEEEEEeCCC
Q 001521 75 IFHDKAYGPTTRNNFLGRIRLSSSQFVKKG-EEALIYYPLEKKSLLSWIQGEVGLKIYYVDIVP 137 (1061)
Q Consensus 75 v~d~d~~~~~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~~ 137 (1061)
|+....- ++...+|.+.++|+++.... .....-++|... ......|++.+.+....+
T Consensus 82 v~~~~~~---~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGS---GKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCC---CccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECcc
Confidence 9998643 23369999999999987753 344455777664 234678888888887544
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.5 Score=38.38 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCCCcEEEEEECC-eEEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCCceeEEEEEECcccee
Q 001521 24 GTSSPYVVIDYYG-QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK 102 (1061)
Q Consensus 24 g~~dPyv~v~~~~-~~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d~~lG~~~v~l~~l~~ 102 (1061)
|.++-.+++.+++ ...+|.-... .+..|++.|.|.+.. +++|+|.||-.|-- .+.|-..+.|++...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-----sRELEI~VywrD~R------slCav~~lrLEd~~~ 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-----SRELEIAVYWRDWR------SLCAVKFLKLEDERH 74 (98)
T ss_pred cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-----ccEEEEEEEEecch------hhhhheeeEhhhhcc
Confidence 3467889999987 5666655433 588999999999987 47899999988754 467888888888321
Q ss_pred cCceeeEEEeccccCCCCeeeeEEEEEEEE
Q 001521 103 KGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 103 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 132 (1061)
+ .-.+|. .+|.+...+.|
T Consensus 75 -~----~~~~le-------pqg~l~~ev~f 92 (98)
T cd08687 75 -E----VQLDME-------PQLCLVAELTF 92 (98)
T ss_pred -c----ceeccc-------cccEEEEEEEe
Confidence 1 223333 37777777776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.8 Score=43.67 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe---EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCC
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ---RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~---~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d 79 (1061)
..++|+|..+.++... ......-||++.+ |++ ..+|+...-+.++.|||.+.|++.-.++.....|.|.||+..
T Consensus 10 ~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4578899998755332 2222335666544 443 236666666678999999999987766555789999999974
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.1 Score=44.45 Aligned_cols=86 Identities=24% Similarity=0.269 Sum_probs=59.6
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
++|.+....++... .....+.||++.+ |++.. .|.... ...++.|||.+.|.+. .|.+..|.|.||+.
T Consensus 10 ~~i~i~~~~~~~~~--~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 10 LRIKIHGITNINLL--DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred eEEEEEeecccccc--CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 78888888887652 1234677888866 54321 222222 2368999999888753 44566999999998
Q ss_pred cC-C--CCceeEEEEEecccc
Q 001521 562 QH-K--GSVALGVTRVPLTAV 579 (1061)
Q Consensus 562 d~-~--~d~~lG~~~i~l~~l 579 (1061)
+. + .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 76 3 468999999998764
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.19 E-value=0.77 Score=46.43 Aligned_cols=95 Identities=16% Similarity=0.136 Sum_probs=65.5
Q ss_pred cEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCeE----EEeeccC--C--CCCCeeeceeEEeecCCCCCCCCeEEEE
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQR----RKTHTAV--R--DLNPTWNEALEFNVGKPPQVFTDMFELN 74 (1061)
Q Consensus 5 ~~L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~~----~~T~~~~--~--tlnP~W~e~f~f~v~~~~~~~~~~L~v~ 74 (1061)
..+.|+|..+.+++........|-||.+.+ |++. ..|+... + ...+.|||.+.|.+.-.++..+.+|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 568899999999987765556888999876 5432 2443321 1 2257799999998876554446799999
Q ss_pred EeeCCCCCCC------CCCceeEEEEEECcc
Q 001521 75 IFHDKAYGPT------TRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 75 v~d~d~~~~~------~~d~~lG~~~v~l~~ 99 (1061)
||+......+ ..+..||.+.++|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 9997654100 034688888888766
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.047 Score=55.22 Aligned_cols=62 Identities=8% Similarity=0.002 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhcCCcccCC
Q 001521 980 LGDFAAQGERVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMAFGFYYLRHPMFRDR 1041 (1061)
Q Consensus 980 l~~va~~~E~~~nl~~w~~P~~t~~~~~~l~~~~~vl~~iP~r~i~l~~g~~~l~~P~~~~~ 1041 (1061)
...++..+..++.++.|++|..|..++.+|.+.+.+..+++...++.+..+..+-=|.+...
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~ 151 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEK 151 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHH
Confidence 33455567888999999999999999999988888888888777766655555666665544
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=90.80 E-value=5 Score=39.07 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=73.8
Q ss_pred EEEEEEEEeeCCCCCcccCCCCCeEEEEEECCee---eeeeeeecCCCCCcccceeEEeeccCC--------CCeEEEEE
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQV---QKTKVSVTRNGTPSWNEDLLFVAAEPF--------TDQLSFTL 558 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~~~---~kT~~~~~~t~nP~wne~f~f~v~~~~--------~~~L~i~V 558 (1061)
.+.+.|++..+++.. ....||+..-|+.. ..|......+..-.||+.|.+.+.... ...+.|.|
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 488999999998753 34456777666543 555544435667899999987754221 22788888
Q ss_pred EeccC-CCCceeEEEEEeccccccccccccccceEEEcccCCCccCCccceEEEEEEe
Q 001521 559 ENRQH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCF 615 (1061)
Q Consensus 559 ~D~d~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~G~i~l~i~l 615 (1061)
+.... ++...+|.+.|+|+++.... ......-+.|... ......+.+++.+
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~--~~~~~~~~~l~~~----~~~~a~L~isi~~ 134 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANED--EEPITVRLLLKKC----KKSNATLSISISL 134 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcC--CCcEEEEEeCccC----CCCCcEEEEEEEE
Confidence 88754 33369999999999987532 1123344666551 2344566666654
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.89 Score=45.23 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=50.7
Q ss_pred CCCCcEEEEE--eCCeEE----EecccCCCCCCccccEEEEEEe--c--CCcEEEEEEEeCCCCCCCCCCCCCCCCCCcc
Q 001521 667 STTDAYVVAK--YASKWI----RTRTVSDSLEPRWNEQYTWKVY--D--PCTVLALGVFDSWGIFEGENGSMETTRPDCR 736 (1061)
Q Consensus 667 g~~dpyv~~~--~~~~~~----rT~~~~~~~~P~wne~~~~~v~--~--~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~ 736 (1061)
..+|-||.+. .|++.+ .|..+.-+..+.|||-.+|+|. | ..+.|.|+|||.+..+ +...
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-----------~~~~ 96 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-----------KAVP 96 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-----------CceE
Confidence 3477787765 566544 6666665677899999999987 3 3489999999986543 4668
Q ss_pred eEEEEEEccc
Q 001521 737 IGKVRIRIST 746 (1061)
Q Consensus 737 lG~~~i~l~~ 746 (1061)
||.+.++|=+
T Consensus 97 vg~~~~~lFd 106 (159)
T cd08397 97 FGGTTLSLFN 106 (159)
T ss_pred EEEEEEeeEC
Confidence 9999888755
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.36 E-value=1.3 Score=44.91 Aligned_cols=88 Identities=25% Similarity=0.268 Sum_probs=62.5
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeee--c-CCCCCcccceeEEeec---cCCCCeEEEEE
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSV--T-RNGTPSWNEDLLFVAA---EPFTDQLSFTL 558 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~--~-~t~nP~wne~f~f~v~---~~~~~~L~i~V 558 (1061)
++|+|..+.+++.. ......|-||++.+ |++.. .|+... + -...+.|||-+.|.+. .|.+..|.|.+
T Consensus 10 ~~i~v~~~h~~~~~-~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 10 LSVTVSSLHRIPPT-WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred EEEEEEEeecCChH-HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 89999999999987 65556888988876 55433 333211 0 1235779998888763 34566999999
Q ss_pred EeccC-C---------CCceeEEEEEecccc
Q 001521 559 ENRQH-K---------GSVALGVTRVPLTAV 579 (1061)
Q Consensus 559 ~D~d~-~---------~d~~lG~~~i~l~~l 579 (1061)
|+... . .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99765 3 457899999888764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.64 E-value=2.1 Score=43.27 Aligned_cols=70 Identities=17% Similarity=0.157 Sum_probs=46.1
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee---eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEecc
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ---KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENRQ 562 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~d 562 (1061)
++|+|+.+..+ .. +.......||++.| |++.. +|.... .+.++.|||-+.|++. .|....|.|.||+..
T Consensus 12 friki~~~~~~-~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 12 FRVKILGIDIP-VL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEeeccc-Cc-CCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 78888888643 33 33334457777755 54432 444444 5667999998888764 344669999999974
Q ss_pred C
Q 001521 563 H 563 (1061)
Q Consensus 563 ~ 563 (1061)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=87.79 E-value=2.6 Score=38.40 Aligned_cols=74 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----EEEeeccCCCCCCeeeceeEEeecCCCCCCCCeEEEEEeeCCC
Q 001521 7 LIVEVVDARNLLPKDGHGTSSPYVVIDY--YGQ----RRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 7 L~V~v~~a~~L~~~d~~g~~dPyv~v~~--~~~----~~~T~~~~~tlnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~ 80 (1061)
+.+.+...++..-......++-||.+.+ |++ ...|+.+.-...+.|||...|++.-.+...+..|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 6677777777755443334588999876 553 3355555545568999999998776655557899999999653
|
Outlier of C2 family. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=84.65 E-value=11 Score=33.27 Aligned_cols=83 Identities=10% Similarity=0.093 Sum_probs=57.2
Q ss_pred CCcEEEEEeCCeEE-EecccCCCCCCccccEEEEEEecCCcEEEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEEEcccc
Q 001521 669 TDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTL 747 (1061)
Q Consensus 669 ~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l 747 (1061)
++-.|+++++++.+ .|.-.. -.+..|++.|++++. .+..|+|.||=.|.- .+.|-..+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~R--------------slCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDWR--------------SLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecch--------------hhhhheeeEhhhh
Confidence 56789999999877 565543 357889999998874 567899999977642 2566667777774
Q ss_pred cCCcEEeeEEeceecCCCCCccccEEEEEEEE
Q 001521 748 ETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 748 ~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~f 779 (1061)
..+ ...+|. ..|.+..+++|
T Consensus 73 ~~~----~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 73 RHE----VQLDME--------PQLCLVAELTF 92 (98)
T ss_pred ccc----ceeccc--------cccEEEEEEEe
Confidence 322 233442 23778777777
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=84.52 E-value=4.5 Score=39.45 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=40.8
Q ss_pred EeeccCCC-CCCeeeceeEEeecCCCCCCCCeEEEEEeeCCCCCCCCCC----ceeEEEEEECcc
Q 001521 40 KTHTAVRD-LNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRN----NFLGRIRLSSSQ 99 (1061)
Q Consensus 40 ~T~~~~~t-lnP~W~e~f~f~v~~~~~~~~~~L~v~v~d~d~~~~~~~d----~~lG~~~v~l~~ 99 (1061)
.|....-+ .++.|||.+.|.+.-.+...+..|.|.||+.+.. ... ..||.+.++|-+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~---~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK---KKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS---TTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC---CccccceeEEEEEEEEeEC
Confidence 56555555 7999999999987554443468999999998766 233 689999999877
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=83.37 E-value=5.9 Score=36.03 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=46.6
Q ss_pred EEEEEEEeeCCCCCcccCCCCCeEEEEEE--CCeee----eeeeeecCCCCCcccceeEEeec---cCCCCeEEEEEEec
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GFQVQ----KTKVSVTRNGTPSWNEDLLFVAA---EPFTDQLSFTLENR 561 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~nP~wne~f~f~v~---~~~~~~L~i~V~D~ 561 (1061)
+.+.+....+.... .....++.||++.+ |++.. .|+.+. -...+.|||-+.|++. .|.+..|.|.+|+.
T Consensus 13 ~~~~~~~~~~~~l~-~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLN-WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcc-cccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 56667777777654 33333688988877 55433 343332 4556899998888764 34466999999986
Q ss_pred cC
Q 001521 562 QH 563 (1061)
Q Consensus 562 d~ 563 (1061)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 43
|
Outlier of C2 family. |
| >PTZ00447 apical membrane antigen 1-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.56 E-value=9.1 Score=41.59 Aligned_cols=111 Identities=12% Similarity=0.140 Sum_probs=82.5
Q ss_pred cEEEEEEEEeecCCCCCCcEEEEEECCeeeeeccccCCCCc--eeeeEEEEeccCCCCCCeEEEEEEcCCCCCCCCCCCe
Q 001521 335 HYLFVRVVKARFLPTKGSPVVKIAVANSRVESKPARRTSCF--EWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGF 412 (1061)
Q Consensus 335 ~~L~V~v~~a~~L~~~~dPyv~v~~~~~~~kT~~~~~t~nP--~Wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~d~~ 412 (1061)
-.|-|.|.+-.++.....-|++++.|...++|..+.-+..= .-++.....++.- ...|.|.|+-+.. .+..-
T Consensus 58 F~LLVeI~EI~~i~k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc--DnTLkI~lfKKkL----vkk~h 131 (508)
T PTZ00447 58 FYLLVKINEIFNINKYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC--DETLRVDLFTTKL----TKKVH 131 (508)
T ss_pred eeEEEEehhhhccccceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec--CceEEEEEEeccc----cceeE
Confidence 45778888888888888999999999999999655432222 4456666666665 6899999998865 68888
Q ss_pred eEEEEEECcc-cCCCCCCCCCCCCeeEEccCCCccccceEEEEE
Q 001521 413 LGGICFDVTE-IPLRDPPDSPLAPQWYRMEGGGAYSGDLMLATW 455 (1061)
Q Consensus 413 lG~~~i~L~~-l~~~~~~~~~~~~~w~~L~~~~~~~G~i~l~~~ 455 (1061)
||.+.+++.. +..+ .--.++||.+...+...+.|.|+..
T Consensus 132 IgdI~InIn~dIIdk----~FPKnkWy~c~kDGq~~cRIqLSFh 171 (508)
T PTZ00447 132 IGQIKIDINASVISK----SFPKNEWFVCFKDGQEICKVQMSFY 171 (508)
T ss_pred EEEEEecccHHHHhc----cCCccceEEEecCCceeeeEEEEeh
Confidence 9999999874 4442 2224799999877667788888654
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=82.15 E-value=3.7 Score=40.03 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=42.8
Q ss_pred EEeCCeEE-----EecccCCC-CCCccccEEEEEEe--c--CCcEEEEEEEeCCCCCCCCCCCCCCCCCC----cceEEE
Q 001521 675 AKYASKWI-----RTRTVSDS-LEPRWNEQYTWKVY--D--PCTVLALGVFDSWGIFEGENGSMETTRPD----CRIGKV 740 (1061)
Q Consensus 675 ~~~~~~~~-----rT~~~~~~-~~P~wne~~~~~v~--~--~~~~l~i~v~d~~~~~~~~~~~~~~~~~d----~~lG~~ 740 (1061)
++.|++.+ .|..+.-+ .++.|||.+.|++. + ..+.|.|+||..+... .. ..||.+
T Consensus 10 ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----------~~~~~~~~lgw~ 78 (142)
T PF00792_consen 10 LYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----------KSKKKKVPLGWV 78 (142)
T ss_dssp EEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----------TT--EEEEEEEE
T ss_pred EEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----------ccccceeEEEEE
Confidence 33566543 45555555 79999999999986 2 3489999999976643 12 689999
Q ss_pred EEEcccc
Q 001521 741 RIRISTL 747 (1061)
Q Consensus 741 ~i~l~~l 747 (1061)
.++|=+.
T Consensus 79 n~~lFd~ 85 (142)
T PF00792_consen 79 NLPLFDY 85 (142)
T ss_dssp EEESB-T
T ss_pred EEEeECC
Confidence 9987665
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1061 | ||||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-07 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 4e-07 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 5e-07 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 9e-07 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 1e-06 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 1e-06 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 7e-06 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 1e-05 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 8e-05 | ||
| 2jqz_A | 131 | Solution Structure Of The C2 Domain Of Human Smurf2 | 1e-04 | ||
| 3pyc_A | 132 | Crystal Structure Of Human Smurf1 C2 Domain Length | 2e-04 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 5e-04 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 6e-04 |
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2 Length = 131 | Back alignment and structure |
|
| >pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain Length = 132 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-34
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
K+ + VV A+ L KD G+S PYV + +++T T +LNP W E F
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 66 VFT-DMFELNIF---HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW 121
+ + + K ++FLG+ + E ++Y L+K++ S
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRTDKSA 134
Query: 122 IQGEVGLKIYY 132
+ G + L I
Sbjct: 135 VSGAIRLHISV 145
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 1e-17
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 6/137 (4%)
Query: 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYT 700
+ + V+ + L G S D YV + RT+T+ +L P W E +
Sbjct: 13 SKWSAKISITVVCAQGLQAKD-KTGSS--DPYVTVQVGKTKKRTKTIYGNLNPVWEENFH 69
Query: 701 WKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
++ ++ + + V D + D +G+ I + TL Y L
Sbjct: 70 FECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD--VWYNLD 127
Query: 761 LLGSNGMTKMGEIEVAV 777
G I + +
Sbjct: 128 KRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 22/148 (14%)
Query: 321 IPIERSSFDLVEK-MHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSC 374
+++S D K + + VV A+ L K GS P V + V ++ +K
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLN 61
Query: 375 FEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPG------FLGGICFDVTEIPLRDP 428
W++ F F + + V D FLG +V +
Sbjct: 62 PVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE-- 119
Query: 429 PDSPLAPQWYRME---GGGAYSGDLMLA 453
WY ++ A SG + L
Sbjct: 120 -----MDVWYNLDKRTDKSAVSGAIRLH 142
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 32/159 (20%)
Query: 476 VNSKAKVYVSPKLW--YLRATVIEAQDILPPVAALKEASFT----IKAQLGFQVQKTKVS 529
K V W + TV+ AQ L K+ + + + Q+G ++TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQG-LQA----KDKTGSSDPYVTVQVGKTKKRTKT- 55
Query: 530 VTRNGTPSWNEDLLFVAAEPFTDQLSFTL--ENRQHKGSVA----------LGVTRVPLT 577
+ N P W E+ F +D++ + E+ K V LG T + +
Sbjct: 56 IYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVR 114
Query: 578 AVERRVDDRKVASRWFTFENTNDEKRAYKGRVHLRLCFD 616
+ +D W+ + D+ G + L + +
Sbjct: 115 TLSGEMD------VWYNLDKRTDKSA-VSGAIRLHISVE 146
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-26
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
+ L V+V+ A +LL D G S P+ +++ R +THT ++LNP WN+ F +
Sbjct: 12 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 71
Query: 64 PQVFTDMFELNIF-HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWI 122
V E+ +F D +FLG++ + ++ G+ Y L+ K L
Sbjct: 72 HDV----LEVTVFDEDG----DKPPDFLGKVAIPLLS-IRDGQPNC--YVLKNKDLEQAF 120
Query: 123 QGEVGLKIYYVD 134
+G + L++ +
Sbjct: 121 KGVIYLEMDLIY 132
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 5e-17
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 326 SSFDLVEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCFEWDQT 380
S V+ + L V+V+KA L G P + + N R+++ + EW++
Sbjct: 4 GSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKV 63
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
F F LEV+V+D D PP FLG + + I P Y +
Sbjct: 64 FTFPIKDIHDV--LEVTVFDE---DGDKPPDFLGKVAIPLLSIR-------DGQPNCYVL 111
Query: 441 E---GGGAYSGDLMLA-TWV 456
+ A+ G + L +
Sbjct: 112 KNKDLEQAFKGVIYLEMDLI 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 17/138 (12%)
Query: 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWK 702
VG +++ V+ +LL +GKS D + + + + ++T TV +L P WN+ +T+
Sbjct: 11 DVGILQVKVLKAADLLAAD-FSGKS--DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 703 VYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762
+ D VL + VFD PD +GKV I + ++ G+ N Y L
Sbjct: 68 IKDIHDVLEVTVFD-EDGD---------KPPD-FLGKVAIPLLSIRDGQ--PNCYVLKNK 114
Query: 763 GSNGMTKMGEIEVAVRFI 780
K G I + + I
Sbjct: 115 DLEQAFK-GVIYLEMDLI 131
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 21/132 (15%)
Query: 490 YLRATVIEAQDILPPVAALKEASFT----IKAQLGFQVQKTKVSVTRNGTPSWNEDLLFV 545
L+ V++A D L + S +LG +T V +N P WN+ F
Sbjct: 14 ILQVKVLKAAD-LLA----ADFSGKSDPFCLLELGNDRLQTHT-VYKNLNPEWNKVFTFP 67
Query: 546 AAEPFTDQLSFTL--ENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR 603
+ D L T+ E+ LG +PL ++ + +N + E+
Sbjct: 68 IKDI-HDVLEVTVFDEDGDKPPDF-LGKVAIPLLSIRDGQP------NCYVLKNKDLEQA 119
Query: 604 AYKGRVHLRLCF 615
KG ++L +
Sbjct: 120 F-KGVIYLEMDL 130
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 1e-22
Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
L V V A N+ PK G P V + + +++KT +LNP WNE LEF++ P
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 66 VFTDMFELNIF-HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIY--YPLEKKSLLSWI 122
F+ + + + +N +G ++ +L Y L +
Sbjct: 67 DFSSSLGIIVKDFET----IGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD-T 121
Query: 123 QGEVGLKIYYVDIVPTPPPAA 143
+ L I Y P P++
Sbjct: 122 GATIDLVIGY---DPPSGPSS 139
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-15
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVY 704
G + + V N+ K GK D V + + +T+ V + L P WNE + +
Sbjct: 7 GMLRVIVESASNIPKTK--FGKP--DPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLR 62
Query: 705 ----DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
D + L + V D ET + IG + + L + Y L+
Sbjct: 63 GIPLDFSSSLGIIVKD-----------FETIGQNKLIGTATVALKDLTGDQSRSLPYKLI 111
Query: 761 -LLGSNGMTKMGEIEVAVRFI 780
LL G I++ + +
Sbjct: 112 SLLNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 7e-10
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 337 LFVRVVKARFLPTKGS----PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE--S 390
L V V A +P P+V + + + ++K W++ F
Sbjct: 9 LRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDF 68
Query: 391 SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDL 450
SS L + V D + +G + ++ P E G +
Sbjct: 69 SSSLGIIVKDF---ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATI 125
Query: 451 MLA 453
L
Sbjct: 126 DLV 128
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP- 549
LR V A + +P K + + +KTK V P WNE L F
Sbjct: 9 LRVIVESASN-IPKTKFGKPDPI-VSVIFKDEKKKTKK-VDNELNPVWNEILEFDLRGIP 65
Query: 550 --FTDQLSFTL--ENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEK-RA 604
F+ L + + + +G V L + + + S + + +EK +
Sbjct: 66 LDFSSSLGIIVKDFETIGQNKL-IGTATVAL----KDLTGDQSRSLPYKLISLLNEKGQD 120
Query: 605 YKGRVHLRLCF 615
+ L + +
Sbjct: 121 TGATIDLVIGY 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 6e-20
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVI--DYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
K+ + V+ A+NL KD P+ I D GQ T T L+P WN+ + VGK
Sbjct: 6 KIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT 65
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS--W 121
+ ++ H K FLG +RL S+ + + L K +
Sbjct: 66 DSITISVWNHKKIHKK-----QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDA 120
Query: 122 IQGEVGLKI 130
++G++ + +
Sbjct: 121 VRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 647 VELGVIGCKNLLPMKTVNGKSTTDAYVVAKY--ASKWIRTRTVSDSLEPRWNEQYTWKVY 704
+ L V+ KNL D + + + T TV ++L+P+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAKKD-FFRLP--DPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 705 DPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYR-NTYPLLLLG 763
+ + + V++ + +G VR+ + + K L L
Sbjct: 64 KTDS-ITISVWN-HKKI-HKKQGAG------FLGCVRLLSNAISRLKDTGYQRLDLCKLN 114
Query: 764 SN-GMTKMGEIEVAVRF 779
+ G+I V+++
Sbjct: 115 PSDTDAVRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 11/124 (8%)
Query: 337 LFVRVVKARFLPTK---GSP----VVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE 389
+ + V+ A+ L K P + + + + + T +W+Q + +
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 390 SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIP-LRDPPDSPLAPQWYRMEGGGAYSG 448
S + +SVW+ + GFLG + I L+D L A G
Sbjct: 67 S---ITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRG 123
Query: 449 DLML 452
+++
Sbjct: 124 QIVV 127
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 2e-19
Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 27/176 (15%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHTAVRDLNPTWNEALE 57
+ + V+V+ L KD G S PYV + Y +T T + LNP WNE +
Sbjct: 7 TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66
Query: 58 FNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE-----ALIYYP 112
F V +F + R++FLG++ + + +
Sbjct: 67 FRVLPQ----RHRILFEVFDENRLT---RDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 113 LEKKSLLSWIQGEVGLKIYYV---------DIVPTPPPAALAPVPQPDPPAKEVKP 159
L +S S ++G + LK+ Y+ + QPD P
Sbjct: 120 LHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLPHP 175
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 7e-15
Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 25/161 (15%)
Query: 638 QLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY------ASKWIRTRTVSDSL 691
+L V + VI L + G S D YV ++T+T+ SL
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKD-ILGAS--DPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 692 EPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGK 751
P+WNE+ ++V + VFD D +G+V + + L T
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFD-----------ENRLTRDDFLGQVDVPLYPLPTEN 106
Query: 752 VYRNTYPL-----LLLGSNGMTKMGEIEVAVRFIRTSPTLD 787
L S+ G + + + ++ + + D
Sbjct: 107 PRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKNGSED 147
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 20/136 (14%)
Query: 332 EKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCF------EWDQT 380
+ + V+V+ L K G+ P V++ + + + +T +W++
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 381 FAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPD-SPLAPQWYR 439
F + V+D + FLG + + +P +P P + +
Sbjct: 65 ILFRVLPQRHR--ILFEVFDE---NRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFV 119
Query: 440 ME---GGGAYSGDLML 452
+ G L L
Sbjct: 120 LHPRSHKSRVKGYLRL 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-19
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVR-DLNPTWNEALEFNVGKPP 64
L V +V A+ L D PYV + Q +K++ A P WNE F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG- 69
Query: 65 QVFTDMFELNIF-HDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQ 123
T + IF D T ++ +G + +G Y + K +
Sbjct: 70 ---TTELKAKIFDKDVG----TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE---YK 119
Query: 124 GEVGLKIYYVDIVPT 138
GE+ + + + P+
Sbjct: 120 GEIWVALSFKPSGPS 134
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-16
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 18/146 (12%)
Query: 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQY 699
P GT+E+ ++ K L D YV ++ ++ P WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLEDADF-LNNM--DPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 700 TWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
+ V + T L +FD + D +G+ I + + T
Sbjct: 63 IFTVSEGTTELKAKIFDK-----------DVGTEDDAVGEATIPLEPVFVEGSIPPTAYN 111
Query: 760 LLLGSNGMTKMGEIEVAVRFIRTSPT 785
++ GEI VA+ F + P+
Sbjct: 112 VVKDE---EYKGEIWVALSFKPSGPS 134
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 2e-09
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 17/123 (13%)
Query: 337 LFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCF-EWDQTFAFGRDSPES 390
L V +V A+ L + P V++ +S A EW++TF F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 391 SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRD-PPDSPLAPQWYRMEGGGAYSGD 449
L+ ++D DV +G IPL + + P Y + Y G+
Sbjct: 72 E--LKAKIFDK---DVGTEDDAVG-----EATIPLEPVFVEGSIPPTAYNVVKDEEYKGE 121
Query: 450 LML 452
+ +
Sbjct: 122 IWV 124
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 24/133 (18%)
Query: 491 LRATVIEAQDILPPVAALKEASFT------IKAQLGFQVQKTKVSVTRNGTPSWNEDLLF 544
L ++ A+ L++A F ++ Q QK+ V+ TP WNE +F
Sbjct: 12 LEVVLVSAKG-------LEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIF 64
Query: 545 VAAEPFTDQLSFTL--ENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEK 602
+E T +L + ++ + A+G +PL V + + + DE+
Sbjct: 65 TVSEG-TTELKAKIFDKDVGTE-DDAVGEATIPLEPV---FVEGSIPPTAYNV--VKDEE 117
Query: 603 RAYKGRVHLRLCF 615
YKG + + L F
Sbjct: 118 --YKGEIWVALSF 128
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 7e-19
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY---GQRRKTHTAVRDLNPTWNEALEFNVG 61
L V+++ A+ L KD GTS P+V I + +T ++LNP WNE F
Sbjct: 26 STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS 120
+V + L + Y +RN+ +G + + ++ V + + L+ S
Sbjct: 86 PYEKVVQRILYLQVLD---YDRFSRNDPIGEVSIPLNK-VDLTQMQTFWKDLKPSGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 18/132 (13%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGS-----PVVKIAV---ANSRVESKPARRTSCFEWD 378
S + L V+++KA+ LP K P VKI + ++E+K R+ W+
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 379 QTFAFGRDSPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQ 436
+TF F E L + V D D + +G + + ++ L
Sbjct: 78 ETFLFEGFPYEKVVQRILYLQVLD---YDRFSRNDPIGEVSIPLNKVDLTQMQ-----TF 129
Query: 437 WYRMEGGGAYSG 448
W ++ G SG
Sbjct: 130 WKDLKPSGPSSG 141
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 46/160 (28%)
Query: 607 GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGK 666
GR+ + ++ L + ++ + L +G
Sbjct: 13 GRIQFSVGYN-----------------FQESTL--------TVKIMKAQELPAK-DFSGT 46
Query: 667 STTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTV----LALGVFDSWG 719
S D +V + T+ +L P WNE + ++ + V L L V D +
Sbjct: 47 S--DPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLD-YD 103
Query: 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
F +R D IG+V I ++ ++ ++ L
Sbjct: 104 RF---------SRNDP-IGEVSIPLNKVDLTQMQTFWKDL 133
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 8e-19
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI------DYYGQRRKTHTAVRDLNPTWNEALEF 58
+ + V V+ L KD G S PYV + + +T T + LNP WNE + F
Sbjct: 20 RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79
Query: 59 NVGKPPQVFTDMFELNIF-HDKAYGPTTRNNFLGRIRLSSSQFVKKGEE-----ALIYYP 112
V P Q +F ++ TR++FLG++ + + +
Sbjct: 80 RV-HPQQ---HRLLFEVFDENR----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFV 131
Query: 113 LEKKSLLSWIQGEVGLKIYYV 133
L +S S ++G + LK+ Y+
Sbjct: 132 LHPRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-13
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 331 VEKMHYLFVRVVKARFLPTK---GS--PVVKIAVANSRVESKPARRTSCF------EWDQ 379
E + VRV+ L K G+ P V++ + + + +T +W++
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 380 TFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDS-PLAPQWY 438
F + L V+D + FLG + + +P +P P + +
Sbjct: 76 EILFRVHPQQHR--LLFEVFDE---NRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130
Query: 439 RME---GGGAYSGDLMLA 453
+ G L L
Sbjct: 131 VLHPRSHKSRVKGYLRLK 148
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 643 PVGTVELGVIGCKNLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWN 696
V + VI L + G S D YV ++T+T+ SL P+WN
Sbjct: 18 NSRIVRVRVIAGIGLAKK-DILGAS--DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWN 74
Query: 697 EQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNT 756
E+ ++V+ L VFD TR D +G+V + + L T
Sbjct: 75 EEILFRVHPQQHRLLFEVFD-ENRL---------TRDD-FLGQVDVPLYPLPTENPRLER 123
Query: 757 YPL-----LLLGSNGMTKMGEIEVAVRFI 780
L S+ G + + + ++
Sbjct: 124 PYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 27/150 (18%)
Query: 482 VYVSPKLWYLRATVIEAQDILPPVAALKEASFT----IKAQLG------FQVQKTKVSVT 531
+ +R VI L K+ ++ L +TK +
Sbjct: 13 LEDEENSRIVRVRVIAGIG-LAK----KDILGASDPYVRVTLYDPMNGVLTSVQTKT-IK 66
Query: 532 RNGTPSWNEDLLFVAAEPFTDQLSFTL--ENRQHK----GSVALGVTRVPLTAVERRVDD 585
++ P WNE++LF P +L F + ENR + G V + + +P E +
Sbjct: 67 KSLNPKWNEEILFRV-HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT---ENPRLE 122
Query: 586 RKVASRWFTFENTNDEKRAYKGRVHLRLCF 615
R + F K KG + L++ +
Sbjct: 123 RPYTFKDFVLHP-RSHKSRVKGYLRLKMTY 151
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-18
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI--------------DYYGQRRKTHTAVRDLNP 50
LI+ ++ ARNL+P+D +G S P+V + +R+T + LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 51 TWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIY 110
WN+ + + Q+ E+ ++ Y + N+FLG + + S + +
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWD---YDRFSSNDFLGEVLIDLSS-TSHLDNTPRW 133
Query: 111 YPLEKKS 117
YPL++++
Sbjct: 134 YPLKEQT 140
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 6e-08
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 29/135 (21%)
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGS-----PVVKI--------------AVANSRVESKP 368
+ + L + +++AR L + + P VK+ A A + +K
Sbjct: 11 LQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70
Query: 369 ARRTSCFEWDQTFAFGRDSPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLR 426
+++ EW+QT + S E LEV+VWD D + FLG + D++
Sbjct: 71 VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWD---YDRFSSNDFLGEVLIDLSSTSHL 127
Query: 427 DPPDSPLAPQWYRME 441
D P+WY ++
Sbjct: 128 DN-----TPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-06
Identities = 34/174 (19%), Positives = 55/174 (31%), Gaps = 61/174 (35%)
Query: 606 KGRVHLRLCFDGGY-HVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVN 664
G + L++ +D G + ++ +NL+P N
Sbjct: 6 TGEIQLQINYDLGNLIIH----------------------------ILQARNLVPRD-NN 36
Query: 665 GKSTTDAYVV--------------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYDP---- 706
G S D +V A RT+ V SL P WN+ +K
Sbjct: 37 GYS--DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94
Query: 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
L + V+D + F + D +G+V I +S+ YPL
Sbjct: 95 KKTLEVTVWD-YDRF---------SSNDF-LGEVLIDLSSTSHLDNTPRWYPLK 137
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 9/116 (7%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
L ++ A+ L P D +G + PYV + + +T T NP WNE L+++
Sbjct: 29 SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYH 88
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115
+ +++ N F+G R S + +K + LE+
Sbjct: 89 GITEEDMQRKTLRISVCD---EDKFGHNEFIGETRFSLKK-LKANQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 53/181 (29%)
Query: 589 ASRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVE 648
S ++++ G + L +D ++
Sbjct: 1 GSEANSYDSDQATTL---GALEFSLLYD-------------------------QDNSNLQ 32
Query: 649 LGVIGCKNLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWK 702
+I K L PM NG + D YV A ++K RT+T+ ++ P WNE +
Sbjct: 33 CTIIRAKGLKPM-DSNGLA--DPYVKLHLLPGASKSNKL-RTKTLRNTRNPVWNETLQYH 88
Query: 703 VYDPC----TVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYP 758
L + V D + + IG+ R + L+ +
Sbjct: 89 GITEEDMQRKTLRISVCDE-----------DKFGHNEFIGETRFSLKKLKANQRKNFNIC 137
Query: 759 L 759
L
Sbjct: 138 L 138
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKI-----AVANSRVESKPARRTSCFEWDQTFAFGRD 386
L +++A+ L S P VK+ A ++++ +K R T W++T +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 387 SPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPD 430
+ E L +SV D D F+G F + ++ +
Sbjct: 91 TEEDMQRKTLRISVCD---EDKFGHNEFIGETRFSLKKLKANQRKN 133
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-18
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 12/115 (10%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
+L + V+ A+ K SPYV + GQ +KT +P W + L V +
Sbjct: 37 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSK 96
Query: 66 VFTDMFELNIF-HDKAYGPTTRNNFLGRIRLSSSQFVK--KGEEALIYYPLEKKS 117
+ ++ H + LG L + +K + + L+
Sbjct: 97 L-----HFRVWSHQTL----KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG 142
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 6e-14
Identities = 28/159 (17%), Positives = 52/159 (32%), Gaps = 28/159 (17%)
Query: 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTW 701
+++ VI K K YV + +T +++ P+W + T
Sbjct: 33 TMKSQLQITVISAKLKENKKN-WFGP--SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89
Query: 702 KVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTL---ETGKVYRNTYP 758
V P + L V+ +T + D +G + I K+
Sbjct: 90 IV-TPVSKLHFRVWSH-----------QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Query: 759 LLLLGSNGMTKM-GEIEVAVRFIRTSPTLDFLHVYSQPL 796
L L G T+ G++ + LD L + S+ +
Sbjct: 138 LQLGGDKEPTETIGDLSI---------CLDGLQLESEVV 167
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 13/130 (10%)
Query: 325 RSSFDLVEKMHYLFVRVVKARFLPTKGS-----PVVKIAVANSRVESKPARRTSCFEWDQ 379
S + L + V+ A+ K + P V++ V +++ T+ +W Q
Sbjct: 26 LGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQ 85
Query: 380 TFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYR 439
S L VW LG D+ E + L
Sbjct: 86 PLTV---IVTPVSKLHFRVWSH---QTLKSDVLLGTAALDIYETL--KSNNMKLEEVVVT 137
Query: 440 MEGGGAYSGD 449
++ GG
Sbjct: 138 LQLGGDKEPT 147
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 9e-06
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 15/132 (11%)
Query: 491 LRATVIEAQDILPPVAALKEASFTI----KAQLGFQVQKTKVSVTRNGTPSWNEDLLFVA 546
L+ TVI A+ K+ F + + Q +KT+ +P W + L +
Sbjct: 38 LQITVISAKLKEN-----KKNWFGPSPYVEVTVDGQSKKTEK-CNNTNSPKWKQPLTVIV 91
Query: 547 AEPFTDQLSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAY 605
+L F + + Q S V LG + + + ++ K+ T + D K
Sbjct: 92 TP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETL-KSNNMKLEEVVVTLQLGGD-KEPT 147
Query: 606 KGRVHLRLCFDG 617
+ L +C DG
Sbjct: 148 ETIGDLSICLDG 159
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 4e-18
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFN 59
+ LIV V DA+NL+P D +G S PYV + ++KT T LNP WNE F
Sbjct: 31 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+ + I+ + T+RN+F+G + S+ K G + ++ L +
Sbjct: 91 L--KESDKDRRLSVEIWD---WDLTSRNDFMGSLSFGISELQKAGVDG--WFKLLSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 51/163 (31%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+GR++++ D + + V KNL+PM NG
Sbjct: 19 RGRIYIQAHIDRE---------------------------VLIVVVRDAKNLVPMD-PNG 50
Query: 666 KSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVY--DPCTVLALGVFDS 717
S D YV K SK +T+T+ SL P WNE + +++ D L++ ++D
Sbjct: 51 LS--DPYVKLKLIPDPKSESKQ-KTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD- 106
Query: 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
W + +R D +G + IS L+ V + LL
Sbjct: 107 WDLT---------SRNDF-MGSLSFGISELQKAGV-DGWFKLL 138
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRD 386
L V V A+ L P VK+ + + S+ ++K + + EW++TF F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 387 SPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG 442
+ L V +WD D+ + F+G + F ++E+ W+++
Sbjct: 93 ESDKDRRLSVEIWD---WDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLS 139
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY--GQR---RKTHTAVRDLNPTWNEALEFN 59
+IV ++ ARNL D GTS PYV + +R +KT T R+LNP +NE+ F+
Sbjct: 16 NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD 75
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
+ ++ + + +RN+ +G+I LS
Sbjct: 76 I-PTEKLRETTIIITVMD---KDKLSRNDVIGKIYLSWK 110
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 31/154 (20%), Positives = 51/154 (33%), Gaps = 49/154 (31%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+G + L LC Y P+A + V +I +NL M + G
Sbjct: 2 RGELLLSLC-----------------YNPSANSI------IVN--IIKARNLKAM-DIGG 35
Query: 666 KSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFD 716
S D YV K K +T T +L P +NE + + + T + + V D
Sbjct: 36 TS--DPYVKVWLMYKDKRVEKK-KTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD 92
Query: 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETG 750
+ + IGK+ + +
Sbjct: 93 K-----------DKLSRNDVIGKIYLSWKSGPGE 115
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYV---VIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+L+V ++ A L D GTS PYV ++ ++ +T + LNP +NE F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV- 92
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
++ + ++ + ++++ +G ++ + V G + L+
Sbjct: 93 PYSELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 35/160 (21%), Positives = 58/160 (36%), Gaps = 45/160 (28%)
Query: 607 GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGK 666
G++ L DY QL +G+I L + + G
Sbjct: 21 GKLQYSL-----------------DYDFQNNQL--------LVGIIQAAELPAL-DMGGT 54
Query: 667 STTDAYVVAK---YASKWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGI 720
S D YV K T+ +L P +NEQ+T+KV L + V+D +
Sbjct: 55 S--DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD-FDR 111
Query: 721 FEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
F ++ D IG+ ++ ++T++ G V L
Sbjct: 112 F---------SKHDI-IGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 17/114 (14%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAV---ANSRVESKPARRTSCFEWDQTFAFGRDSP 388
L V +++A LP P VK+ + + E+K R+T +++ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 389 E-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME 441
E L ++V+D D + +G + + +W ++
Sbjct: 96 ELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQ 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-16
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFN 59
+L+V ++ A L D GTS PYV + + ++ +T + LNP +NE F
Sbjct: 42 NQLLVGIIQAAELPALDMGGTSDPYVKV--FLLPDKKKKFETKVHRKTLNPVFNEQFTFK 99
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
V ++ + ++ + ++++ +G ++ + V G + L+
Sbjct: 100 V-PYSELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 45/171 (26%)
Query: 596 ENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCK 655
E ++ G++ L DY QL +G+I
Sbjct: 18 EKEEPKEEEKLGKLQYSL-----------------DYDFQNNQL--------LVGIIQAA 52
Query: 656 NLLPMKTVNGKSTTDAYVVAK---YASKWIRTRTVSDSLEPRWNEQYTWKVYD---PCTV 709
L + + G S D YV K T+ +L P +NEQ+T+KV
Sbjct: 53 ELPAL-DMGGTS--DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 109
Query: 710 LALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
L + V+D + F ++ D IG+ ++ ++T++ G V L
Sbjct: 110 LVMAVYD-FDRF---------SKHDI-IGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 7e-07
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAV---ANSRVESKPARRTSCFEWDQTFAFGRDSP 388
L V +++A LP P VK+ + + E+K R+T +++ F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 389 E-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG 442
E L ++V+D D + +G + + +W ++
Sbjct: 104 ELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQS 150
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 3e-16
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 16/112 (14%)
Query: 334 MHYLFVRVVKARFLPTKGS--PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESS 391
M L V V KA+F + V + V N + + A R S W+Q F F + +
Sbjct: 4 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEINRLDLG 62
Query: 392 SFLEVSVWD--PPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME 441
L V VW+ +G + + I + +W ++
Sbjct: 63 --LTVEVWNKGLIWDT------MVGTVWIPLRTIRQS---NEEGPGEWLTLD 103
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 17/117 (14%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPP 64
L V V A+ ++ + YV + + T AVR P+W + F + +
Sbjct: 5 SLLCVGVKKAKFDGAQE---KFNTYVTL-KVQNVKSTTIAVRGSQPSWEQDFMFEINRLD 60
Query: 65 QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL-IYYPLEKKSLLS 120
+ +++ + +G + + + EE + L+ +++++
Sbjct: 61 ----LGLTVEVWNKGLIW----DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA 109
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 5e-06
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP 549
L V +A+ F L Q K+ R PSW +D +F
Sbjct: 6 LLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRL 59
Query: 550 FTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFE 596
L+ + N+ +G +PL + + + + W T +
Sbjct: 60 -DLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQS--NEEGPGEWLTLD 103
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 3e-16
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
+LIV ++ A++L ++ +PYV I +R+T T + L P WN+ ++
Sbjct: 18 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 77
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
+ M E+ ++ + FLG I + + E +Y L+
Sbjct: 78 PVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETALLDDEPH--WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 332 EKMHYLFVRVVKARFLPTKGS-----PVVKI-----AVANSRVESKPARRTSCFEWDQTF 381
+ H L V ++ A+ LP++ P VKI ++ +K ++T +W+QTF
Sbjct: 15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 382 AFGRDSPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYR 439
+ LE+++WD R FLG I ++ L D P WY+
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETALLDD------EPHWYK 127
Query: 440 ME 441
++
Sbjct: 128 LQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 4e-05
Identities = 26/157 (16%), Positives = 54/157 (34%), Gaps = 48/157 (30%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
G++ ++L + QL + ++G K+L
Sbjct: 4 SGQLSIKLW-----------------FDKVGHQL--------IVTILGAKDLPSR-EDGR 37
Query: 666 KSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCT----VLALGVF 715
+ YV +K RT+TV +LEP+WN+ + + +L + ++
Sbjct: 38 PR--NPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 94
Query: 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKV 752
D + E E+ + +G++ I + T
Sbjct: 95 DQARVREEES--------EF-LGEILIELETALLDDE 122
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 5e-16
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 8/118 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
+LIV ++ A++L ++ +PYV I +R+T T + L P WN+ ++
Sbjct: 21 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 80
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+ M E+ ++ + FLG I + + E +Y L+
Sbjct: 81 PVHRREFRERMLEITLWDQARVR-EEESEFLGEILIELETALLDDEPH--WYKLQTHD 135
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 19/122 (15%)
Query: 332 EKMHYLFVRVVKARFLPTKGS-----PVVKI-----AVANSRVESKPARRTSCFEWDQTF 381
+ H L V ++ A+ LP++ P VKI ++ +K ++T +W+QTF
Sbjct: 18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 382 AFGRDSPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYR 439
+ LE+++WD R FLG I ++ L D P WY+
Sbjct: 78 IYSPVHRREFRERMLEITLWDQARV-REEESEFLGEILIELETALLDD------EPHWYK 130
Query: 440 ME 441
++
Sbjct: 131 LQ 132
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 26/165 (15%), Positives = 55/165 (33%), Gaps = 51/165 (30%)
Query: 598 TNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNL 657
++ G++ ++L + QL + ++G K+L
Sbjct: 2 SSGSSG---GQLSIKLW-----------------FDKVGHQL--------IVTILGAKDL 33
Query: 658 LPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCT--- 708
+ YV +K RT+TV +LEP+WN+ + +
Sbjct: 34 PSR-EDGRPR--NPYVKIYFLPDRSDKNKR-RTKTVKKTLEPKWNQTFIYSPVHRREFRE 89
Query: 709 -VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKV 752
+L + ++D + E E+ +G++ I + T
Sbjct: 90 RMLEITLWDQARVREEES---------EFLGEILIELETALLDDE 125
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 7e-16
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
KL V +++A+NL D G S PYV I +++KT LNP +NE+ F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
V Q+ + + Y +N+ +G++ + +
Sbjct: 85 V-PFEQIQKVQVVVTVLD---YDKIGKNDAIGKVFVGYN 119
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 38/114 (33%)
Query: 596 ENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCK 655
EK G + L Y PTA +L TV ++ K
Sbjct: 4 GGGILEKL---GDICFSLR-----------------YVPTAGKL------TVV--ILEAK 35
Query: 656 NLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
NL M V G S D YV K K +T ++L P +NE ++++V
Sbjct: 36 NLKKM-DVGGLS--DPYVKIHLMQNGKRLKKK-KTTIKKNTLNPYYNESFSFEV 85
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-16
Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
+ L++ +++ + L+ K GT PYV I D + +KT T +P ++E F
Sbjct: 27 RVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP 85
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSL 118
V + + +++ + ++ +G + + +E +Y L + L
Sbjct: 86 V--QEEDDQKRLLVTVWNRASQS--RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL 140
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGS----PVVKIAVA-----NSRVESKPARRTSCFEW 377
+ + L + +++ + L +K P VKI++ +++ +
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAF 78
Query: 378 DQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQW 437
+ F F + L V+VW+ R + G +G + F V + D W
Sbjct: 79 HEHFFFPVQEEDDQKRLLVTVWN--RASQSRQSGLIGCMSFGVKSLLTPDKE----ISGW 132
Query: 438 YRMEG 442
Y + G
Sbjct: 133 YYLLG 137
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 48/159 (30%)
Query: 599 NDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLL 658
+ +G LRL R L L +I K L+
Sbjct: 6 HHHSHKVQGAGQLRLS-----------------IDAQDRVL--------LLHIIEGKGLI 40
Query: 659 PMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKV--YDPCTVL 710
+ G D YV +T+TV D +P ++E + + V D L
Sbjct: 41 SKQ--PGTC--DPYVKISLIPEDSRLRHQ-KTQTVPDCRDPAFHEHFFFPVQEEDDQKRL 95
Query: 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLET 749
+ V++ +R IG + + +L T
Sbjct: 96 LVTVWN-RASQ---------SRQSGLIGCMSFGVKSLLT 124
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 9e-16
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 28/138 (20%)
Query: 6 KLIVEVVDARNLLPKD-----------GHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWN 53
L +++ +A +L P PY+ ++ R +T T + +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 54 EALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL-IYYP 112
+ +V EL +FHD G ++F+ + + ++ G +
Sbjct: 67 DEFVTDVCNG-----RKIELAVFHDAPIG---YDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 113 LEKKSLLSWIQGEVGLKI 130
LE +G+V + I
Sbjct: 119 LEP-------EGKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-11
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 27/150 (18%)
Query: 643 PVGTVELGVIGCKNLLPM--------KTVNGKSTTDAYVVAKY-ASKWIRTRTVSDSLEP 693
G +++ + +L P D Y+ S+ +T T + P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 694 RWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVY 753
W++++ V + + L VF D + I+ L
Sbjct: 64 AWHDEFVTDVCNG-RKIELAVFHD-----------APIGYDDFVANCTIQFEELLQNGSR 111
Query: 754 RNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783
+ L G++ V + +S
Sbjct: 112 HFEDWIDL------EPEGKVYVIIDLSGSS 135
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 15/139 (10%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 490 YLRATVIEAQDILPPVAALKEASFT----------IKAQLGFQVQKTKVSVTRNGTPSWN 539
L+ + EA + P +L++A I + + + +P+W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 540 EDLLFVAAEPFTDQLSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVASRWFTFENT 598
++ + ++ + + G + + + + + W E
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEP- 121
Query: 599 NDEKRAYKGRVHLRLCFDG 617
+G+V++ + G
Sbjct: 122 -------EGKVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 26/126 (20%)
Query: 336 YLFVRVVKARFLPTKGS----------------PVVKIAVANSRVE-SKPARRTSCFEWD 378
L +++ +A L P + + V +SR+ + ++T+ W
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 379 QTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWY 438
F + +E++V+ F+ E+ W
Sbjct: 67 DEFVTDVCNGRK---IELAVFHD---APIGYDDFVANCTIQFEELLQNGSRHFED---WI 117
Query: 439 RMEGGG 444
+E G
Sbjct: 118 DLEPEG 123
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-15
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-------GQRRKTHTAVRDLNPTWNEALE 57
L + V+ ++L+ +DG +PYV Y +RKT + + NPT+NE L
Sbjct: 20 GTLFIMVMHIKDLVTEDG-ADPNPYVKT--YLLPDTHKTSKRKTKISRKTRNPTFNEMLV 76
Query: 58 FNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLG--RIRLSSSQFVKKGEEALIYYPLEK 115
++ + +L++ N FLG + L +E + +Y L
Sbjct: 77 YSGYSKETLRQRELQLSVLS---AESLRENFFLGGITLPLKDFNL---SKETVKWYQLTA 130
Query: 116 KSLL 119
+ L
Sbjct: 131 ATYL 134
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 25/129 (19%)
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGS----PVVKI-----AVANSRVESKPARRTSCFEWD 378
+ + LF+ V+ + L T+ P VK S+ ++K +R+T ++
Sbjct: 13 LSVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFN 72
Query: 379 QTFAFGRDSPE--SSSFLEVSVWDPPRG---DVAAPPGFLGGICFDVTEIPLRDPPDSPL 433
+ + S E L++SV FLGGI + + L
Sbjct: 73 EMLVYSGYSKETLRQRELQLSVLSAESLRENF------FLGGITLPLKDFNLSKE----- 121
Query: 434 APQWYRMEG 442
+WY++
Sbjct: 122 TVKWYQLTA 130
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 26/126 (20%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQ 698
GT+ + V+ K+L+ + + YV SK +T+ + P +NE
Sbjct: 20 GTLFIMVMHIKDLVTED----GADPNPYVKTYLLPDTHKTSKR-KTKISRKTRNPTFNEM 74
Query: 699 YTWKVYDPCT----VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYR 754
+ Y T L L V EN +G + + + K
Sbjct: 75 LVYSGYSKETLRQRELQLSVLS-AESL-REN---------FFLGGITLPLKDFNLSKETV 123
Query: 755 NTYPLL 760
Y L
Sbjct: 124 KWYQLT 129
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-15
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFN 59
L V ++ A NL D G S PYV + +RKT LNPT+NEAL F+
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE 106
V P V + + Y N +G R+ G E
Sbjct: 212 V-APESVENVGLSIAVVD---YDCIGHNEVIGVCRVGPEAADPHGRE 254
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 25/133 (18%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYV---VIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+L+V ++ A +L KD +G S PYV ++ ++ +T + LNP +NE +F+V
Sbjct: 20 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV- 78
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSS-SQFVKKGEEALIYYPLEKKSLLS 120
++ +++ + +R++ +G++ L + + ++ + ++ + +
Sbjct: 79 PLAELAQRKLHFSVYD---FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK 135
Query: 121 WIQGEVGLKIYYV 133
GE+ + Y+
Sbjct: 136 ADLGELNFSLCYL 148
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 48/226 (21%), Positives = 79/226 (34%), Gaps = 48/226 (21%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQL---GFQVQKTKVSVTRNGTPSWNEDLLF-VA 546
L +++A D LP + + +K L + +TKV + P +NE F V
Sbjct: 22 LVVRILQALD-LPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVP 79
Query: 547 AEPFTDQ-LSFTL--ENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR 603
+ L F++ +R + + +G +V L + + W EK
Sbjct: 80 LAELAQRKLHFSVYDFDRFSRHDL-IG--QVVLDNLLELAEQPPDRPLWRDILEGGSEKA 136
Query: 604 AYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTV 663
G ++ LC Y PTA L + +I NL M +
Sbjct: 137 DL-GELNFSLC-----------------YLPTAGLL--------TVTIIKASNLKAMD-L 169
Query: 664 NGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
G S D YV + K +T ++L P +NE + V
Sbjct: 170 TGFS--DPYVKASLISEGRRLKKR-KTSIKKNTLNPTYNEALVFDV 212
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 67/312 (21%), Positives = 106/312 (33%), Gaps = 59/312 (18%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGS-----PVVKIAVAN---SRVESKPARRTSCFEWD 378
+ + L VR+++A LP K S P VKI + + ++K R+T ++
Sbjct: 12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 379 QTFAFGRDSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQW 437
+TF F E + L SV+D D + +G + D PPD PL
Sbjct: 72 ETFQFSVPLAELAQRKLHFSVYD---FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDI 128
Query: 438 YRMEGGGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIE 497
A G+L + + P L T+I+
Sbjct: 129 LEGGSEKADLGELNFS----------------------------LCYLPTAGLLTVTIIK 160
Query: 498 AQDILPPVAALKEASFTIKAQLGFQV-----QKTKVSVTRNGTPSWNEDLLF-VAAEPFT 551
A + L + + +KA L + +KT + P++NE L+F VA E
Sbjct: 161 ASN-LKAMDLTGFSDPYVKASLISEGRRLKKRKTSI-KKNTLNPTYNEALVFDVAPESVE 218
Query: 552 D-QLSFTLENRQHKGS-VALGVTRVPLTAVERRVDD---------RKVASRWFTFENTND 600
+ LS + + G +GV RV A + + RK W
Sbjct: 219 NVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKT 278
Query: 601 EKRAYKGRVHLR 612
KG L
Sbjct: 279 LSSFTKGGKGLS 290
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-15
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-----RKTHTAVRDLNPTWNEALEFN 59
L V V+ AR+L D G S PYV ++ Y + +KTH N +NE F+
Sbjct: 30 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
+ + E + +RN +GR+ L ++
Sbjct: 90 I-PCESLEEISVEFLVLD---SERGSRNEVIGRLVLGAT 124
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 35/104 (33%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+G + + LC Y+ T L TV V+ ++L V+G
Sbjct: 16 RGELLVSLC-----------------YQSTTNTL------TVV--VLKARHLPKS-DVSG 49
Query: 666 KSTTDAYV------VAKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
S D YV K SK +T + +NE + + +
Sbjct: 50 LS--DPYVKVNLYHAKKRISKK-KTHVKKCTPNAVFNELFVFDI 90
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-15
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
LIV ++ +L D +G S P+V + + KT + LNP +NE ++
Sbjct: 37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 96
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
+ K + +++++ Y N+++G +L S
Sbjct: 97 I-KHSDLAKKSLDISVWD---YDIGKSNDYIGGCQLGIS 131
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 35/120 (29%)
Query: 590 SRWFTFENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVEL 649
+ + + +G++ + L Y L V
Sbjct: 7 ALYEEEQVERIGDIEERGKILVSLM-----------------YSTQQGGL------IVG- 42
Query: 650 GVIGCKNLLPMKTVNGKSTTDAYV------VAKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
+I C +L M NG S D +V +K +T+ +L P +NE++ + +
Sbjct: 43 -IIRCVHLAAM-DANGYS--DPFVKLWLKPDMGKKAKH-KTQIKKKTLNPEFNEEFFYDI 97
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 3e-15
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 5 QKLIVEVVDARNLL---PKDGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEF 58
K V V+ A + D T PYV + R++T D+NP WNE EF
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 59 NVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+ ++ E+ + D Y + LG + S +K GE+ + + + +
Sbjct: 63 IL---DPNQENVLEITLM-DANYV---MDETLGTATFTVSS-MKVGEKKEVPFIFNQVT 113
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 18/135 (13%), Positives = 43/135 (31%), Gaps = 28/135 (20%)
Query: 651 VIGCKNL--LPMKTVNGKSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYD 705
V+ + + D YV RTR ++ + P WNE + + +
Sbjct: 9 VLRATKVTKGAFGDMLDTP--DPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP 66
Query: 706 PCT-VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGS 764
VL + + D+ + +G +S+++ G+ +
Sbjct: 67 NQENVLEITLMDA-----------NYVMDE-TLGTATFTVSSMKVGEKKEVPFIF----- 109
Query: 765 NGMTKMGEIEVAVRF 779
++ E+ + +
Sbjct: 110 ---NQVTEMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 335 HYLFVRVVKARFLPTKGS--------PVVKI---AVANSRVESKPARRTSCFEWDQTFAF 383
H V V++A + P V++ +SR ++ W++TF F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 384 GRDSPESSSFLEVSVWD--PPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPL 433
D + + LE+++ D + LG F V+ + + + + P
Sbjct: 63 ILDPNQENV-LEITLMDANYVMDE------TLGTATFTVSSMKVGEKKEVPF 107
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 490 YLRATVIEAQDILPPVAALKEASFT---IKAQLG---FQVQKTKVSVTRNGTPSWNEDLL 543
V+ A + A ++ + ++T+ + P WNE
Sbjct: 4 KFTVVVLRATK-VTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFE 61
Query: 544 FVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR 603
F+ + L TL + + LG + + + F F
Sbjct: 62 FILDPNQENVLEITLMDANYVMDETLGTATFTV----SSMKVGEKKEVPFIFNQVT---- 113
Query: 604 AYKGRVHLRL 613
+ + + L
Sbjct: 114 --EMVLEMSL 121
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 1e-14
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 5 QKLIVEVVDARNLLPKD-GHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEF 58
Q L+V V + L D S+PYV +RKT +NP ++E L +
Sbjct: 23 QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY 82
Query: 59 NVGKPPQVFTD-MFELNIFHDKAYGPTTRNNFLG--RIRLSSSQFVKKGEEALIYYPLEK 115
+ P + + +++H +G RN FLG I++ S + KK + PL
Sbjct: 83 EI--PESLLAQRTLQFSVWH---HGRFGRNTFLGEAEIQMDSWKLDKKLDH---CLPLHG 134
Query: 116 KSLLS 120
K
Sbjct: 135 KISAE 139
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 7e-07
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 48/162 (29%)
Query: 607 GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGK 666
GR+ L Y + L + V C L +
Sbjct: 10 GRIAFSLK-----------------YEQQTQSL--------VVHVKECHQLAYADEAKKR 44
Query: 667 STTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDS 717
S + YV K +T D++ P ++E +++ + L V+
Sbjct: 45 S--NPYVKTYLLPDKSRQGKR-KTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH- 100
Query: 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
G F R +G+ I++ + + K + PL
Sbjct: 101 HGRF---------GRNTF-LGEAEIQMDSWKLDKKLDHCLPL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 9e-07
Identities = 20/122 (16%), Positives = 33/122 (27%), Gaps = 20/122 (16%)
Query: 333 KMHYLFVRVVKARFLPTKGS------PVVKIAV-----ANSRVESKPARRTSCFEWDQTF 381
+ L V V + L P VK + + ++ R T +D+T
Sbjct: 21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETL 80
Query: 382 AFGRDSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
+ + L+ SVW FLG + L +
Sbjct: 81 RYEIPESLLAQRTLQFSVWH---HGRFGRNTFLGEAEIQMDSWKLDKK-----LDHCLPL 132
Query: 441 EG 442
G
Sbjct: 133 HG 134
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQ-----RRKTHTAVRDLNPTWNEALEFN 59
KL V +++A+NL D G S PYV I ++KT LNP +NE+ F
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
V Q+ + + Y +N+ +G++ + +
Sbjct: 210 V-PFEQIQKVQVVVTVLD---YDKIGKNDAIGKVFVGYN 244
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 7/132 (5%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYV---VIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+L+V ++ A L D GTS PYV ++ ++ +T + LNP +NE F V
Sbjct: 19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV- 77
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW 121
++ + ++ + ++++ +G ++ + +
Sbjct: 78 PYSELAGKTLVMAVYD---FDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQE 134
Query: 122 IQGEVGLKIYYV 133
G++ + YV
Sbjct: 135 KLGDICFSLRYV 146
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 53/226 (23%), Positives = 86/226 (38%), Gaps = 49/226 (21%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQL---GFQVQKTKVSVTRNGTPSWNEDLLF-VA 546
L +I+A + LP + + +K L + +TKV + P +NE F V
Sbjct: 21 LLVGIIQAAE-LPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVP 78
Query: 547 AEPFTDQ-LSFTL--ENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKR 603
+ L + +R K + +G +VP+ VD V W ++ E++
Sbjct: 79 YSELAGKTLVMAVYDFDRFSKHDI-IGEFKVPM----NTVDFGHVTEEWRDLQSAEKEEQ 133
Query: 604 AYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTV 663
G + L Y PTA +L TV ++ KNL M V
Sbjct: 134 EKLGDICFSLR-----------------YVPTAGKL------TVV--ILEAKNLKKMD-V 167
Query: 664 NGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKV 703
G S D YV K K +T ++L P +NE ++++V
Sbjct: 168 GGLS--DPYVKIHLMQNGKRLKKK-KTTIKKNTLNPYYNESFSFEV 210
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 6e-10
Identities = 48/293 (16%), Positives = 96/293 (32%), Gaps = 59/293 (20%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKG-----SPVVKIAVAN---SRVESKPARRTSCFEWD 378
S D + + L V +++A LP P VK+ + + E+K R+T ++
Sbjct: 11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70
Query: 379 QTFAFGRDSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQW 437
+ F F E + L ++V+D D + +G ++P+ + +W
Sbjct: 71 EQFTFKVPYSELAGKTLVMAVYD---FDRFSKHDIIG-----EFKVPMNTVDFGHVTEEW 122
Query: 438 YRMEGGGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPKLWYLRATVIE 497
++ + + + P L ++E
Sbjct: 123 RDLQSAEKEEQEKLGDICFSLR------------------------YVPTAGKLTVVILE 158
Query: 498 AQDILPPVAALKEASFTIKAQLGFQV-----QKTKVSVTRNGTPSWNEDLLF-VAAEPFT 551
A++ L + + +K L +KT + P +NE F V E
Sbjct: 159 AKN-LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPFEQIQ 216
Query: 552 D-QLSFTLENRQHKGS-VALGVTRVPLTAVERRVD--------DRKVASRWFT 594
Q+ T+ + G A+G V + + R+ ++W T
Sbjct: 217 KVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHT 269
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 31/167 (18%)
Query: 631 DYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK---YASKWIRTRTV 687
DY QL V G+I L + + G S D YV K T+
Sbjct: 13 DYDFQNNQL------LV--GIIQAAELPAL-DMGGTS--DPYVKVFLLPDKKKKFETKVH 61
Query: 688 SDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744
+L P +NEQ+T+KV L + V+D + IG+ ++ +
Sbjct: 62 RKTLNPVFNEQFTFKVPYSELAGKTLVMAVYD-----------FDRFSKHDIIGEFKVPM 110
Query: 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRTSPTLDFLHV 791
+T++ G V L K+G+I ++R+ PT L V
Sbjct: 111 NTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRY---VPTAGKLTV 154
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-14
Identities = 13/115 (11%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI------DYYGQRRKTHTAVRDLNPTWNEALEF 58
++ + ++ NL + + + +T +NE
Sbjct: 43 KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV 102
Query: 59 NVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113
++ P + +++ + LG ++S ++ + GE + +Y L
Sbjct: 103 SM-SYPALHQKTLRVDVCT---TDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 21/117 (17%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAV------ANSRVESKPARRTSCFEWDQTFAFGR 385
+ +++ L +++AV ++P + +++ F
Sbjct: 45 FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSM 104
Query: 386 DSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRD-PPDSPLAPQWYRM 440
P L V V D + LGG +I L + + +WY +
Sbjct: 105 SYPALHQKTLRVDVCT---TDRSHLEECLGG-----AQISLAEVCRSGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 24/126 (19%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYV------VAKYASKWIRTRTVSDSLEPRWNEQ 698
+ +I NL + + + ++ + RTR + S +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 699 YTWKVYD---PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRN 755
+ + L + V +C +G +I ++ +
Sbjct: 100 FWVSMSYPALHQKTLRVDVCT-TDRS---------HLEEC-LGGAQISLAEVCRSGERST 148
Query: 756 T-YPLL 760
Y LL
Sbjct: 149 RWYNLL 154
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 5e-14
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 5 QKLIVEVVDARNLLPKDG-HGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEF 58
+L VEV+ AR+L K G T +PYV + ++KT A + L+P + ++L F
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 59 NVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+ PQ + ++ ++ D YG F+G ++ + + + +Y L S
Sbjct: 90 DE--SPQ--GKVLQVIVWGD--YGRMDHKCFMGVAQILLEE-LDLSSMVIGWYKLFPPS 141
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 19/122 (15%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQ 698
G +E+ VI ++L YV +K +TR +L+P + +
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTP--APYVKVYLLENGACIAKK-KTRIARKTLDPLYQQS 86
Query: 699 YTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYP 758
+ VL + V+ +G +G +I + L+ + Y
Sbjct: 87 LVFDESPQGKVLQVIVWGDYGRM---------DHKCF-MGVAQILLEELDLSSMVIGWYK 136
Query: 759 LL 760
L
Sbjct: 137 LF 138
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 7e-04
Identities = 27/123 (21%), Positives = 46/123 (37%), Gaps = 20/123 (16%)
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGS------PVVKIAV-----ANSRVESKPARRTSCFE 376
+ +K L V V++AR L K P VK+ + ++ +++ AR+T
Sbjct: 23 IGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPL 82
Query: 377 WDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQ 436
+ Q+ F D L+V VW F+G + E+ L
Sbjct: 83 YQQSLVF--DESPQGKVLQVIVWG--DYGRMDHKCFMGVAQILLEELDLSSM-----VIG 133
Query: 437 WYR 439
WY+
Sbjct: 134 WYK 136
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 8e-14
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 29/139 (20%)
Query: 6 KLIVEVVDARNLLPKD----------GHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNE 54
L V + +A L P GH PY+ + R +T T + PT+NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 55 ALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIY---Y 111
NV + EL +FH+ G ++F+ L + ++ + +
Sbjct: 90 EFCANVTDGGHL-----ELAVFHETPLG---YDHFVANCTLQFQELLRTTGASDTFEGWV 141
Query: 112 PLEKKSLLSWIQGEVGLKI 130
LE +G+V + I
Sbjct: 142 DLEP-------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-11
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 24/155 (15%)
Query: 633 RPTARQLWKPPVGTVELGVIGCKNLLPM-------KTVNGKSTTDAYVVAKYASKWI-RT 684
R + G + + + L P G D Y+ + +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 685 RTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRI 744
T + +P +NE++ V D L L VF D + ++
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHE-----------TPLGYDHFVANCTLQF 124
Query: 745 STLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRF 779
L +T+ + + G++ V +
Sbjct: 125 QELLRTTGASDTFEGWVD----LEPEGKVFVVITL 155
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 3e-08
Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 22/139 (15%)
Query: 490 YLRATVIEAQDILPPVAALKEASFTIKAQL----------GFQVQKTKVSVTRNGTPSWN 539
YLR + EA + P +L+ + F QL +V +T + P++N
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST-KQKTNKPTYN 88
Query: 540 EDLLFVAAEPFTDQLSFTLENRQHKGS-VALGVTRVPLTAVERRVDDRKVASRWFTFENT 598
E+ F A L + + G + + + R W E
Sbjct: 89 EE--FCANVTDGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-- 144
Query: 599 NDEKRAYKGRVHLRLCFDG 617
+G+V + + G
Sbjct: 145 ------PEGKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 8e-06
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 23/125 (18%)
Query: 336 YLFVRVVKARFLPTKGS---------------PVVKIAVANSRV-ESKPARRTSCFEWDQ 379
YL VR+ +A L P + ++V RV ++ ++T+ +++
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 380 TFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYR 439
F LE++V+ F+ E+ LR S W
Sbjct: 90 EFCANVTDGGH---LELAVFHE---TPLGYDHFVANCTLQFQEL-LRTTGASDTFEGWVD 142
Query: 440 MEGGG 444
+E G
Sbjct: 143 LEPEG 147
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI----DYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+L V ++A + G YV +T R L+ TW E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
++ T L + +R++ G +RL A + L+
Sbjct: 83 -AEEELPTATLTLTLRT---CDRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTSG 134
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 337 LFVRVVKARFLPTKGS--PVVKIAVA----NSRVESKPARRTSCFEWDQTFAFGRDSPE- 389
LFV ++A G V+ +VA + ++ +R W++ E
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87
Query: 390 SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSG 448
++ L +++ D + G + + + QW ++ G SG
Sbjct: 88 PTATLTLTLRT---CDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSGPSSG 138
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-13
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 5 QKLIVEVVDARNLLPKDGHG-TSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEF 58
+ +V + +AR L D TS PY+ + + KT + L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKM--TILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 59 NVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRL 95
Q+ I + +R++ +G + +
Sbjct: 80 YGIPYTQIQELALHFTILS---FDRFSRDDIIGEVLI 113
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGS------PVVKIAV---ANSRVESKPARRTSCFEW 377
S + + V + +AR LP P +K+ + +V+++ R+T +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 378 DQTFAFGRDSPE--SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPP 429
D+TF F L ++ D + +G + ++ I L +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILS---FDRFSRDDIIGEVLIPLSGIELSEGK 124
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 28/128 (21%)
Query: 631 DYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK---YASKWIRTRTV 687
+Y + V + + L M T+D Y+ ++TR +
Sbjct: 16 EYNFERKAF------VV--NIKEARGLPAM-DEQSM-TSDPYIKMTILPEKKHKVKTRVL 65
Query: 688 SDSLEPRWNEQYTWKVYDPCTV----LALGVFDSWGIFEGENGSMETTRPDCRIGKVRIR 743
+L+P ++E +T+ + L + + F +R D IG+V I
Sbjct: 66 RKTLDPAFDETFTFYGIPYTQIQELALHFTILS-FDRF---------SRDDI-IGEVLIP 114
Query: 744 ISTLETGK 751
+S +E +
Sbjct: 115 LSGIELSE 122
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-13
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 5 QKLIVEVVDARNLLP-------KDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTW 52
L V V++AR+L P + S+PYV I ++T + P +
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKI--CLLPDQKNSKQTGVKRKTQKPVF 83
Query: 53 NEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYP 112
E F + + L + + +R+ +G++ + + V + +
Sbjct: 84 EERYTFEI-PFLEAQRRTLLLTVVD---FDKFSRHCVIGKVSVPLCE-VDLVKGGHWWKA 138
Query: 113 LEKKSLLS 120
L S
Sbjct: 139 LIPSGPSS 146
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 24/128 (18%)
Query: 337 LFVRVVKARFLPTKGS------------PVVKIAV---ANSRVESKPARRTSCFEWDQTF 381
L VRV++AR LP S P VKI + + ++ R+T +++ +
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87
Query: 382 AFGRDSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRM 440
F E L ++V D D + +G + + E+ L W +
Sbjct: 88 TFEIPFLEAQRRTLLLTVVD---FDKFSRHCVIGKVSVPLCEVDLVKGG-----HWWKAL 139
Query: 441 EGGGAYSG 448
G SG
Sbjct: 140 IPSGPSSG 147
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 21/120 (17%)
Query: 650 GVIGCKNLLPMKTVNG----KSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWK 702
VI ++L P + +G + ++ YV +T + +P + E+YT++
Sbjct: 31 RVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFE 90
Query: 703 VYD---PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
+ L L V D + F +R IGKV + + ++ K L
Sbjct: 91 IPFLEAQRRTLLLTVVD-FDKF---------SRHCV-IGKVSVPLCEVDLVKGGHWWKAL 139
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 4e-13
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
KLIV V RNL+ G S PYV + RRKTH + + LNP ++++ +F+
Sbjct: 24 NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS 82
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
V P+V ++ + + + + LG++ ++ + + + +Y L + S
Sbjct: 83 V-SLPEVQRRTLDVAVKNSGGFL-SKDKGLLGKVLVALAS-EELAKGWTQWYDLTEDS 137
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 337 LFVRVVKARFLPTK---GS-PVVKIAV-----ANSRVESKPARRTSCFEWDQTFAFGRDS 387
L V V R L GS P V++ + + R ++ +++T +DQ+F F
Sbjct: 26 LIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85
Query: 388 PE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME 441
PE L+V+V + ++ G LG + + L QWY +
Sbjct: 86 PEVQRRTLDVAVKNSGGF-LSKDKGLLGKVLVALASEELAKG-----WTQWYDLT 134
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 6e-06
Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 51/174 (29%)
Query: 596 ENTNDEKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCK 655
++ G++ L + + +L + V C+
Sbjct: 3 SGSSGSPL---GQIQLTIR-----------------HSSQRNKL--------IVVVHACR 34
Query: 656 NLLPMKTVNGKSTTDAYVV------AKYASKWIRTRTVSDSLEPRWNEQYTWKVYD---P 706
NL+ + +D YV + + + +T +L P +++ + + V
Sbjct: 35 NLIAF----SEDGSDPYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQSFDFSVSLPEVQ 89
Query: 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
L + V +S G + G +GKV + +++ E K + Y L
Sbjct: 90 RRTLDVAVKNSGGFLSKDKGL---------LGKVLVALASEELAKGWTQWYDLT 134
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 4e-13
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 332 EKMHYLFVRVVKARFLPTKGS--PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPE 389
+ L V V KA+F + V + V N + A R S W+Q F F + +
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVESTTI-AVRGSQPSWEQDFMFEINRLD 69
Query: 390 SSSFLEVSVWD--PPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYS 447
L V VW+ +G + + I + +W ++ +
Sbjct: 70 LG--LTVEVWNKGLIWDT------MVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMA 118
Query: 448 GDLMLATWVGTQ 459
+ T T
Sbjct: 119 DSEICGTKDPTF 130
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 490 YLRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEP 549
L V +A+ F L Q ++ R PSW +D +F
Sbjct: 15 LLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVESTTIAVRGSQPSWEQDFMFEINRL 68
Query: 550 FTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFE 596
L+ + N+ +G +PL + + + + W T +
Sbjct: 69 -DLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQS--NEEGPGEWLTLD 112
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 92/616 (14%), Positives = 179/616 (29%), Gaps = 179/616 (29%)
Query: 539 NEDLLFVAAEPFTDQLSF---------TLENRQHK-----GSVALGVTRV-------PLT 577
+D+L V + F D L + G R+
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 578 AVERRVDD--RK----VASRWFTFEN-TNDEKRAYKGRVHLRLCFDGG----YHVMDEAA 626
V++ V++ R + S T + + R Y + RL D Y+V
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQP 136
Query: 627 HVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK------ 680
+ R +L +P + GV+G GK+ V Y +
Sbjct: 137 Y--LKLRQALLEL-RPAKNVLIDGVLGS----------GKTWVALDVCLSYKVQCKMDFK 183
Query: 681 --WI---RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDC 735
W+ + LE DP + S ++
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK---LLYQIDP---------------NWTSRSDHSSNIKL 225
Query: 736 RIGKVRIRISTLETGKVYRNTYPLLLLG---SNGMTKMGEIEVAVRFI-RTSPTLDFLHV 791
RI ++ + L K Y N LL+L + + + R DFL
Sbjct: 226 RIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 792 YSQPLLPLMHHIKPLGMVQQEMLRSGAVKIIAAHL---ARSEPPLRRETVLCMLDADSHA 848
+ + L HH L + + L + L + P L ++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR----RLSIIAE---- 335
Query: 849 FSMRKVRANW--FRIIN------VLAGVIDILRWADDTRSWKN----------PTATILV 890
S+R A W ++ +N ++ +++L A+ + + PT
Sbjct: 336 -SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--- 391
Query: 891 HALLVMLVWF------PDLIVPTLAFYVFVIGVWNYRFRKRDPLPHFDPKISLADT---- 940
L ++ WF ++V L Y V P + + K+ L +
Sbjct: 392 ---LSLI-WFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALH 446
Query: 941 ---IERDELDEEFDTVPSARPNEIVRARYDK---------LRTLGARVQTLLGDFAAQGE 988
++ + + FD ++++ D+ L+ E
Sbjct: 447 RSIVDHYNIPKTFD------SDDLIPPYLDQYFYSHIGHHLKN------------IEHPE 488
Query: 989 RVQALVTWRDPRATGIFVGLCFVVAMILYLVPSKMVAMA-------FGFY--YLR--HPM 1037
R+ +F+ F+ I + + + + FY Y+ P
Sbjct: 489 RMTLF--------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 1038 FRDRMPSPALNFFRRL 1053
+ +R+ + L+F ++
Sbjct: 541 Y-ERLVNAILDFLPKI 555
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 8e-09
Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNP-TWNEALEFNVGKPP 64
LIV + L G + + + GQ + + ++E + V
Sbjct: 22 ALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI 76
Query: 65 QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQG 124
++ E+ I Y N +G R+ + V++ + ++ + + I+
Sbjct: 77 -DRNEVLEIQI---FNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN--AIIKT 130
Query: 125 EVGLKIYYVDIVPTPPP 141
+ +++ Y
Sbjct: 131 SLSMEVRY-----QAAD 142
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 56.9 bits (136), Expect = 3e-08
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 8/85 (9%)
Query: 6 KLIVEVVDARNLL---PKDGHGTSSPYVVI---DYYGQRRKTHTAVRDLNPTWNEALEFN 59
K V V+ A + D T PYV + R++T D+NP WNE EF
Sbjct: 19 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 78
Query: 60 VGKP--PQVFTDMFELNIFHDKAYG 82
+ + + + N D+ G
Sbjct: 79 LDPNQENVLEITLMDANYVMDETLG 103
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 4e-08
Identities = 28/178 (15%), Positives = 57/178 (32%), Gaps = 18/178 (10%)
Query: 323 IERSSFDLVEKM--HYLFVRVVKARFLPTKGS--------PVVKIAV---ANSRVESKPA 369
I+ +VE H V V++A + P V++ + +SR ++
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF 63
Query: 370 RRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPP 429
W++TF F D + + LE+++ D LG F V+ + + +
Sbjct: 64 NNDINPVWNETFEFILDPNQENV-LEITLMDANYV----MDETLGTATFTVSSMKVGEKK 118
Query: 430 DSPLAPQWYRMEGGGAYSGDLMLATWVGTQADDSFPDAWKTDTAGNVNSKAKVYVSPK 487
+ P + A ++ ++ K + PK
Sbjct: 119 EVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPK 176
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 50.3 bits (119), Expect = 3e-06
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 16/122 (13%)
Query: 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAK---YASKWIRTRTVSDSLEPRWNE 697
+ V+ + + T D YV RTR ++ + P WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 698 QYTWKVYDP-CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNT 756
+ + + VL + + D D +G +S+++ G+
Sbjct: 74 TFEFILDPNQENVLEITLMD------------ANYVMDETLGTATFTVSSMKVGEKKEVP 121
Query: 757 YP 758
+
Sbjct: 122 FI 123
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+ I +L+V V++A L +G S+PY I Q T T LNP WN +F +
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS 120
Q D+ L +F + P ++FLGR + ++ + E P+ ++ LL
Sbjct: 443 KDLYQ---DVLCLTLFDRDQFSP---DDFLGRTEIPVAKIRTEQESK---GPMTRRLLLH 493
Query: 121 WIQ-GEVGLKI 130
+ GEV ++
Sbjct: 494 EVPTGEVWVRF 504
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 3e-07
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 10/100 (10%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+ L+V A +L + Y+ + + GQ +T + NP W + ++F
Sbjct: 390 QRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN 448
Query: 61 GKPPQVFTDMFELNIF-HDKAYGPTTRNNFLGR--IRLSS 97
+ ++ D ++ LG S
Sbjct: 449 VLLST--GGPLRVQVWDADY----GWDDDLLGSCDRSPHS 482
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 5e-05
Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 17/147 (11%)
Query: 585 DRKVASRWFTFENTNDEKRAYKGRVHL------------RLCFDGGYHVMDEAAH-VCSD 631
D + E N ++ A + + R C G + ++ C D
Sbjct: 319 DYSLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQD 378
Query: 632 YRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSL 691
+ T + G L V + + DAY+ + + RT V ++
Sbjct: 379 SKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTAT--DAYLKVFFGGQEFRTGVVWNNN 436
Query: 692 EPRWNEQYTWKVYD--PCTVLALGVFD 716
PRW ++ ++ L + V+D
Sbjct: 437 NPRWTDKMDFENVLLSTGGPLRVQVWD 463
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 4e-06
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 12/142 (8%)
Query: 335 HYLFVRVVKARFLPTKGSPVVKIA-----VANSRVESKPARRTSCFEWDQTFAFGRDSPE 389
+ L + +++AR LP K ++ A + + + A + F W + F F + P
Sbjct: 11 NVLKLWIIEARELPPKKRYYCELCLDDMLYARTTSKPRSASGDTVF-WGEHFEF-NNLPA 68
Query: 390 SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGD 449
+ D + G++G + +P+ QWY + G
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLV-----TVPVATLAGRHFTEQWYPVTLPTGSGGS 123
Query: 450 LMLATWVGTQADDSFPDAWKTD 471
+ + G + K
Sbjct: 124 GGMGSGGGGGSGGGSGGKGKGG 145
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 42.3 bits (98), Expect = 8e-04
Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRR-KTHTAVRDL---NPTWNEALEFNV 60
L + +++AR L PK Y + +T + R W E EFN
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRL 95
+ + ++G + +
Sbjct: 66 LPA---VRALRLHLYRDSDKKRKKDKAGYVGLVTV 97
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 49.2 bits (116), Expect = 8e-06
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 1/150 (0%)
Query: 137 PTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKE 196
+A + PA A AAKP E+ + AEA P + +
Sbjct: 61 KLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKET 120
Query: 197 PAG-DIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHV 255
A + Q D S + E++ + + ++ + P
Sbjct: 121 EAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGARE 180
Query: 256 MAASVSGSVPEVKVTPPSCSPQPISRSASM 285
A GSV + S+ A +
Sbjct: 181 DDAINRGSVVLASRRTGHLVNEKASKEAKV 210
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 46.9 bits (110), Expect = 3e-05
Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 7/167 (4%)
Query: 137 PTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKE 196
T P + + + + E E E A +P + E
Sbjct: 23 ETAVPEN-SGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNE 81
Query: 197 PAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVM 256
A + EE+A + + + ++A P+A +
Sbjct: 82 AATTETAE------AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135
Query: 257 AASVSGSVPEVKVTPPSCSPQPISRSASMASFASATAGNIPINGPQP 303
AA + + EV+ P + + + + P
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182
|
| >3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 6e-04
Identities = 25/150 (16%), Positives = 42/150 (28%), Gaps = 7/150 (4%)
Query: 137 PTPPPAALAPVPQPDPPAKEVKPDPTVEAKAEAAKPNEEPAADHEAKVDAEAVPAPENKE 196
A+ A E E KA E P+A+ + K D E PE
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASE-VVAETPSAEAKPKSDKETEAKPEATN 128
Query: 197 PAGDIEPQCDTSSAPEQVQANEEQARQQPSMQEQSGHIEFDLTTSKAGPKAPAAPSDHVM 256
+ +P A E + +E P E++ + S +
Sbjct: 129 QGDESKP------AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDD 182
Query: 257 AASVSGSVPEVKVTPPSCSPQPISRSASMA 286
A + V + T + + + A
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQA 212
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1061 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-16 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-10 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-08 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 0.002 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-15 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-13 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 6e-09 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-08 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-15 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 8e-10 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-07 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 4e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-14 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 2e-07 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-14 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 6e-08 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-04 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 3e-13 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 4e-12 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-05 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-05 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-11 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 0.001 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-11 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-08 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-11 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 6e-05 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 7e-11 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 5e-06 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-04 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 9e-11 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-08 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-06 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-04 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-10 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.001 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 4e-09 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 4e-09 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 0.003 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 4e-09 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-04 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 2e-04 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 5e-09 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 3e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 3e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-04 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-05 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 6e-04 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 0.001 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 0.002 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 2e-16
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 8/115 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
+LIV ++ A++L ++ +PYV I +R+T T + L P WN+ ++
Sbjct: 14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
+ M E+ ++ + FLG I + + E +Y L+
Sbjct: 74 PVHRREFRERMLEITLWDQARVRE-EESEFLGEILIELETALLDDEPH--WYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (136), Expect = 4e-10
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKG-----SPVVKIAVANSRVES-----KPARRTSCFE 376
+ H L V ++ A+ LP++ +P VKI R + K ++T +
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 377 WDQTFAFGRDSPES--SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLA 434
W+QTF + LE+++WD R FLG I ++ L D
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESE-FLGEILIELETALLDD------E 118
Query: 435 PQWYRME 441
P WY+++
Sbjct: 119 PHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 1e-08
Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 47/162 (29%)
Query: 607 GRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGK 666
G++ ++L + QL + ++G K+L
Sbjct: 1 GQLSIKLW-----------------FDKVGHQL--------IVTILGAKDLPSR---EDG 32
Query: 667 STTDAYVVA-----KYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCT----VLALGVFDS 717
+ YV + RT+TV +LEP+WN+ + + +L + ++D
Sbjct: 33 RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 92
Query: 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
+ E E+ +G++ I + T + Y L
Sbjct: 93 ARVREEES---------EFLGEILIELETALLDDE-PHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.002
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 24/127 (18%)
Query: 487 KLWY------LRATVIEAQDILPPVAALKEASFTIKAQL-----GFQVQKTKVSVTRNGT 535
KLW+ L T++ A+D LP + + +K ++TK V +
Sbjct: 6 KLWFDKVGHQLIVTILGAKD-LPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VKKTLE 63
Query: 536 PSWNEDLLFVAAEPFTDQ---LSFTLENRQHKGS---VALGVTRVPLTAVERRVDDRKVA 589
P WN+ ++ + L TL ++ LG + L
Sbjct: 64 PKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA-----LLDDE 118
Query: 590 SRWFTFE 596
W+ +
Sbjct: 119 PHWYKLQ 125
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.7 bits (175), Expect = 2e-15
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 11/134 (8%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTA-VRDLNPTWNEALEFNVGKPP 64
L V +V A+ L D PYV + Q +K++ A P WNE F V +
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70
Query: 65 QVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQG 124
IF ++ +G + +G Y + K +G
Sbjct: 71 TELK----AKIFDKDVGT---EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE---YKG 120
Query: 125 EVGLKIYYVDIVPT 138
E+ + + + P+
Sbjct: 121 EIWVALSFKPSGPS 134
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 67.1 bits (163), Expect = 1e-13
Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVS-DSLEPRWNEQY 699
P GT+E+ ++ K L + + D YV ++ ++ P WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 700 TWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPL 759
+ V + T L +FD + D +G+ I + + T
Sbjct: 63 IFTVSEGTTELKAKIFDK-----------DVGTEDDAVGEATIPLEPVFVEGSIPPTAYN 111
Query: 760 LLLGSNGMTKMGEIEVAVRFIRTSPT 785
++ GEI VA+ F + P+
Sbjct: 112 VVKDEE---YKGEIWVALSFKPSGPS 134
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 53.2 bits (127), Expect = 6e-09
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 491 LRATVIEAQDILPPVAALKEASFTIKAQLGFQVQKTKVSVTRNGTPSWNEDLLFVAAEPF 550
L ++ A+ L L ++ Q QK+ V+ TP WNE +F +E
Sbjct: 12 LEVVLVSAKG-LEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70
Query: 551 TDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAYKGRVH 610
T+ + + A+G +PL V + + + + YKG +
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVV----KDEEYKGEIW 123
Query: 611 LRLCF 615
+ L F
Sbjct: 124 VALSF 128
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 52.4 bits (125), Expect = 1e-08
Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 15/123 (12%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAVANSRVESKPAR-RTSCFEWDQTFAFGRDSPES 390
L V +V A+ L P V++ +S A + EW++TF F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 391 SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGGAYSGDL 450
++ D D +G + + + + P Y + Y G++
Sbjct: 72 ELKAKIFDKDVGTEDD-----AVGEATIPLEPVF----VEGSIPPTAYNVVKDEEYKGEI 122
Query: 451 MLA 453
+A
Sbjct: 123 WVA 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.9 bits (173), Expect = 4e-15
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFN 59
+ LIV V DA+NL+P D +G S PYV + ++KT T LNP WNE F
Sbjct: 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKS 117
+ + + + I+ + T+RN+F+G + S+ K G + ++ L +
Sbjct: 75 LKESDK--DRRLSVEIWD---WDLTSRNDFMGSLSFGISELQKAGVDG--WFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.9 bits (134), Expect = 8e-10
Identities = 33/167 (19%), Positives = 61/167 (36%), Gaps = 52/167 (31%)
Query: 601 EKRAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPM 660
E+R GR++++ D + + V KNL+PM
Sbjct: 1 ERR---GRIYIQAHIDRE---------------------------VLIVVVRDAKNLVPM 30
Query: 661 KTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALG 713
+ +D YV K +T+T+ SL P WNE + +++ + L++
Sbjct: 31 ---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVE 87
Query: 714 VFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
++D + T + +G + IS L+ V + LL
Sbjct: 88 IWDW-----------DLTSRNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 4e-07
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAVA-----NSRVESKPARRTSCFEWDQTFAFGRD 386
L V V A+ L P VK+ + S+ ++K + + EW++TF F
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 387 SPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG 442
+ L V +WD D+ + F+G + F ++E+ W+++
Sbjct: 77 ESDKDRRLSVEIWDW---DLTSRNDFMGSLSFGISELQKAG------VDGWFKLLS 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (172), Expect = 4e-15
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+ + L V+V+ A +LL D G S P+ +++ R +THT ++LNP WN+ F +
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLS 120
+ D+ E+ +F + +FLG++ + ++ G+ Y L+ K L
Sbjct: 62 ----KDIHDVLEVTVFDEDGD---KPPDFLGKVAIPLLS-IRDGQP--NCYVLKNKDLEQ 111
Query: 121 WIQGEVGLKIYYVD 134
+G + L++ +
Sbjct: 112 AFKGVIYLEMDLIY 125
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (167), Expect = 2e-14
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTW 701
VG +++ V+ +LL +GKS D + + + + ++T TV +L P WN+ +T+
Sbjct: 3 KDVGILQVKVLKAADLLAADF-SGKS--DPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 702 KVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761
+ D VL + VFD + +P +GKV I + ++ G+ N Y L
Sbjct: 60 PIKDIHDVLEVTVFDE-----------DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKN 106
Query: 762 LGSNGMTKMGEIEVAVRFIR 781
K G I + + I
Sbjct: 107 KDLEQAFK-GVIYLEMDLIY 125
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 20/130 (15%)
Query: 331 VEKMHYLFVRVVKARFLPTKGS-----PVVKIAVANSRVESKPARRTSCFEWDQTFAFGR 385
V+ + L V+V+KA L P + + N R+++ + EW++ F F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 386 DSPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME---G 442
+ V D + FLG + + I P Y ++
Sbjct: 62 KDIHDVLEVTVFDEDGDKPPD-----FLGKVAIPLLSIR-------DGQPNCYVLKNKDL 109
Query: 443 GGAYSGDLML 452
A+ G + L
Sbjct: 110 EQAFKGVIYL 119
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 68.2 bits (166), Expect = 5e-14
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYV---VIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
+L+V ++ A L D GTS PYV ++ ++ +T + LNP +NE F V
Sbjct: 34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV- 92
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLE 114
++ + ++ + ++++ +G ++ + V G + L+
Sbjct: 93 PYSELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNT-VDFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.9 bits (121), Expect = 6e-08
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 14/122 (11%)
Query: 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYV---VAKYASKWIRTRTVSDSLEPRWNEQ 698
+ +G+I L + + G S D YV + K T+ +L P +NEQ
Sbjct: 31 FQNNQLLVGIIQAAELPALD-MGGTS--DPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQ 87
Query: 699 YTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYP 758
+T+KV V + + IG+ ++ ++T++ G V
Sbjct: 88 FTFKVPYSELGGKTLVMAVY--------DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 759 LL 760
L
Sbjct: 140 LQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 2e-04
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGS-----PVVKIAVANS---RVESKPARRTSCFEWD 378
S D + + L V +++A LP P VK+ + + E+K R+T ++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 379 QTFAFGRDSPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQW 437
+ F F E L ++V+D D + +G + + + +W
Sbjct: 86 EQFTFKVPYSELGGKTLVMAVYD---FDRFSKHDIIGEFKVPMNTVDFGHVTE-----EW 137
Query: 438 YRME 441
++
Sbjct: 138 RDLQ 141
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.1 bits (160), Expect = 3e-13
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 18/127 (14%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI--------------DYYGQRRKTHTAVRDLNP 50
LI+ ++ ARNL+P+D +G S P+V + +R+T + LNP
Sbjct: 18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77
Query: 51 TWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIY 110
WN+ + + Q+ E+ ++ Y + N+FLG + + S + +
Sbjct: 78 EWNQTVIYKSISMEQLMKKTLEVTVWD---YDRFSSNDFLGEVLIDLSS-TSHLDNTPRW 133
Query: 111 YPLEKKS 117
YPL++++
Sbjct: 134 YPLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.0 bits (113), Expect = 5e-07
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 29/135 (21%)
Query: 328 FDLVEKMHYLFVRVVKARFLPTKGS-----PVVKIAVANSRVE--------------SKP 368
+ + L + +++AR L + + P VK+ + R + +K
Sbjct: 11 LQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70
Query: 369 ARRTSCFEWDQTFAFGRDSPES--SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLR 426
+++ EW+QT + S E LEV+VWD D + FLG + D++
Sbjct: 71 VQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDY---DRFSSNDFLGEVLIDLSSTSHL 127
Query: 427 DPPDSPLAPQWYRME 441
D P+WY ++
Sbjct: 128 DN-----TPRWYPLK 137
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 32/134 (23%)
Query: 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVV--------------AKYASKWIRTRTVSDS 690
G + + ++ +NL+P + +D +V A RT+ V S
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 691 LEPRWNEQYTWKVYDPCT----VLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRIST 746
L P WN+ +K L + V+D + + +G+V I +S+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWD-----------YDRFSSNDFLGEVLIDLSS 123
Query: 747 LETGKVYRNTYPLL 760
YPL
Sbjct: 124 TSHLDNTPRWYPLK 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 62.4 bits (151), Expect = 4e-12
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
L V V+ AR+L D G S PYV + ++KTH N +NE F+
Sbjct: 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
+ + E + +RN +GR+ L ++
Sbjct: 75 I-PCESLEEISVEFLVLD---SERGSRNEVIGRLVLGAT 109
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 1e-05
Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 23/126 (18%)
Query: 337 LFVRVVKARFLPTK-----GSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRD 386
L V V+KAR LP P VK+ + + S+ ++ + T +++ F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 387 SPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIP--------LRDPPDSPLAPQW 437
+E V D RG +G + T + D P +A +W
Sbjct: 77 CESLEEISVEFLVLDSERGS---RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KW 132
Query: 438 YRMEGG 443
+ + G
Sbjct: 133 HMLCDG 138
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (101), Expect = 2e-05
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 47/153 (30%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+G + + LC+ T+ + V+ ++L +
Sbjct: 1 RGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKS---DV 32
Query: 666 KSTTDAYVVAKYASKWI-----RTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDS 717
+D YV +T + +NE + + + + V DS
Sbjct: 33 SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS 92
Query: 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETG 750
E + IG++ + + +G
Sbjct: 93 -----------ERGSRNEVIGRLVLGATAEGSG 114
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (147), Expect = 1e-11
Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 17/134 (12%)
Query: 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQ 65
+L + V+ A+ K SPYV + GQ +KT +P W + L V
Sbjct: 7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV----- 61
Query: 66 VFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVK----KGEEALIYYPLEKKSLLSW 121
++ + + LG L + +K K EE ++ L +
Sbjct: 62 TPVSKLHFRVWSHQTLK---SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTE 118
Query: 122 IQGEV-----GLKI 130
G++ GL++
Sbjct: 119 TIGDLSICLDGLQL 132
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.001
Identities = 22/124 (17%), Positives = 39/124 (31%), Gaps = 14/124 (11%)
Query: 337 LFVRVVKARFLPTKGS-----PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESS 391
L + V+ A+ K + P V++ V +++ T+ +W Q
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 392 SFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG---GGAYSG 448
F V + DV LG D+ E + ++ G G
Sbjct: 68 HF-RVWSHQTLKSDV-----LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIG 121
Query: 449 DLML 452
DL +
Sbjct: 122 DLSI 125
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 3e-11
Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 12/110 (10%)
Query: 334 MHYLFVRVVKARFLPTKGS--PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESS 391
M L V V KA+F + V + V N + + A R S W+Q F F + +
Sbjct: 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEINRLDLG 59
Query: 392 SFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRME 441
+EV +G + + I + +W ++
Sbjct: 60 LTVEVWNKGLIW------DTMVGTVWIPLRTIRQ---SNEEGPGEWLTLD 100
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 2e-08
Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 15/124 (12%)
Query: 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKP 63
+ L V V A+ ++ + YV + + T VR P+W + F + +
Sbjct: 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEINR- 55
Query: 64 PQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL-IYYPLEKKSLLSWI 122
+ +++ + +G + + + EE + L+ +++++
Sbjct: 56 ---LDLGLTVEVWNKGLI----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA-- 106
Query: 123 QGEV 126
E+
Sbjct: 107 DSEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 8e-04
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 24/125 (19%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVL 710
V K K + YV K + T V +P W + + +++ L
Sbjct: 8 VKKAKFDGAQ----EKF--NTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLGL 60
Query: 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTL--ETGKVYRNTYPLLLLGSNGMT 768
+ V++ + D +G V I + T+ + L S +
Sbjct: 61 TVEVWN------------KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD---SQAIM 105
Query: 769 KMGEI 773
EI
Sbjct: 106 ADSEI 110
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.5 bits (143), Expect = 5e-11
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
LIV ++ +L D +G S P+V + + KT + LNP +NE ++
Sbjct: 15 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116
+ K + +++++ Y N+++G +L S GE +Y K
Sbjct: 75 I-KHSDLAKKSLDISVWD---YDIGKSNDYIGGCQLGISAK---GERLKHWYECLKN 124
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 43/160 (26%)
Query: 606 KGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNG 665
+G++ + L + G + +G+I C +L M +
Sbjct: 1 RGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAM---DA 32
Query: 666 KSTTDAYVVA-----KYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGI 720
+D +V +T+ +L P +NE++ + + +
Sbjct: 33 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS--------DLAKKS 84
Query: 721 FEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760
+ + + + IG ++ IS G+ ++ Y L
Sbjct: 85 LDISVWDYDIGKSNDYIGGCQLGISAK--GERLKHWYECL 122
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 19/124 (15%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 337 LFVRVVKARFLPTK-----GSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRD 386
L V +++ L P VK+ + ++ +++ ++T E+++ F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 387 SPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEI--------PLRDPPDSPLAPQW 437
+ + L++SVWD G ++GG ++ D + +W
Sbjct: 77 HSDLAKKSLDISVWDYDIGK---SNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RW 132
Query: 438 YRME 441
++++
Sbjct: 133 HQLQ 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (142), Expect = 7e-11
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHG-TSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNV 60
+ +V + +AR L D TS PY+ + + KT + L+P ++E F
Sbjct: 22 KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLS-SSQFVKKGEEALIYYPLEKKS 117
Q+ I + +R++ +G + + S + +G+ + + S
Sbjct: 82 IPYTQIQELALHFTILS---FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGPS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.1 bits (106), Expect = 5e-06
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 24/130 (18%)
Query: 627 HVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYV-VAKYASKWIRTR 685
+Y + + + + L M + S + + ++TR
Sbjct: 12 FFSLEYNFERKAF--------VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTR 63
Query: 686 TVSDSLEPRWNEQYTWKVYDP----CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVR 741
+ +L+P ++E +T+ L + + D IG+V
Sbjct: 64 VLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF-----------DRFSRDDIIGEVL 112
Query: 742 IRISTLETGK 751
I +S +E +
Sbjct: 113 IPLSGIELSE 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (96), Expect = 1e-04
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 327 SFDLVEKMHYLFVRVVKARFLPTKGSP---------VVKIAVANSRVESKPARRTSCFEW 377
S + + V + +AR LP + + +V+++ R+T +
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 378 DQTFAFGRDSPES--SSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAP 435
D+TF F L ++ D + +G + ++ I L +
Sbjct: 74 DETFTFYGIPYTQIQELALHFTILSF---DRFSRDDIIGEVLIPLSGIELSE------GK 124
Query: 436 QWYRME 441
E
Sbjct: 125 MLMNRE 130
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (140), Expect = 9e-11
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 5 QKLIVEVVDARNLLP---KDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVG 61
K V V+ A + D T PYV + N E
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSW 121
++ E+ + + LG + S +K GE+ + + + +
Sbjct: 63 ILDPNQENVLEITLMDAN----YVMDETLGTATFTVSS-MKVGEKKEVPFIFNQVT---- 113
Query: 122 IQGEVGLKIYYVDIVPT 138
+ + + + ++ +
Sbjct: 114 -EMVLEMSL---EVASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 4e-08
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 20/133 (15%)
Query: 651 VIGCKNLLPMKTVNGKSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYDPC 707
V+ + + T D YV RTR ++ + P WNE + + +
Sbjct: 9 VLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ 68
Query: 708 TVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGM 767
+ D +G +S+++ G+ +
Sbjct: 69 ENVLEITLMDANYVM-----------DETLGTATFTVSSMKVGEKKEVPFIF------NQ 111
Query: 768 TKMGEIEVAVRFI 780
+E+++
Sbjct: 112 VTEMVLEMSLEVA 124
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (104), Expect = 7e-06
Identities = 18/130 (13%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 335 HYLFVRVVKARFLPTKGS--------PVVKIAV---ANSRVESKPARRTSCFEWDQTFAF 383
H V V++A + P V++ + +SR ++ W++TF F
Sbjct: 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62
Query: 384 GRDSPESSSF-LEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEG 442
D + + + + + + LG F V+ + + + + +
Sbjct: 63 ILDPNQENVLEITLMDANYVMDE------TLGTATFTVSSMKVGEKKE-----VPFIFNQ 111
Query: 443 GGAYSGDLML 452
++ L
Sbjct: 112 VTEMVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 16/128 (12%)
Query: 491 LRATVIEAQDILPPVAALKEASFT---IKAQLGFQVQKTKVSVTRNGTPSW--NEDLLFV 545
V+ A + A ++ + K + N + NE F+
Sbjct: 5 FTVVVLRATK-VTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 546 AAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTNDEKRAY 605
+ L TL + + LG + + + F F
Sbjct: 64 LDPNQENVLEITLMDANYVMDETLGTATFTV----SSMKVGEKKEVPFIFNQVT------ 113
Query: 606 KGRVHLRL 613
+ + + L
Sbjct: 114 EMVLEMSL 121
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.3 bits (140), Expect = 2e-10
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
KL V +++A+NL D G S PYV I +++KT LNP +NE+ F
Sbjct: 25 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSS 98
V Q+ + + Y +N+ +G++ + +
Sbjct: 85 V-PFEQIQKVQVVVTVLD---YDKIGKNDAIGKVFVGYN 119
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 0.001
Identities = 24/136 (17%), Positives = 49/136 (36%), Gaps = 25/136 (18%)
Query: 337 LFVRVVKARFLPT-----KGSPVVKIAVANSR-----VESKPARRTSCFEWDQTFAFGRD 386
L V +++A+ L P VKI + + ++ + T ++++F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 387 SPE-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIP--------LRDPPDSPLAPQW 437
+ + V+V D + +G + + P P+A QW
Sbjct: 87 FEQIQKVQVVVTVLDYDKIG---KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QW 142
Query: 438 YRMEGGGAYSGDLMLA 453
+ ++ D MLA
Sbjct: 143 HTLQVEE--EVDAMLA 156
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.6 bits (128), Expect = 4e-09
Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 18/121 (14%)
Query: 5 QKLIVEVVDARNL--LPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRD-LNPTWNEAL 56
++L V ++ + L + K+ + P V+++ +G R+T + NP W+
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 57 EFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116
EF V P + + Y +++N+F+G+ + ++ + L K
Sbjct: 64 EFEVTVP---DLALVRFMVED---YDSSSKNDFIGQSTIP----WNSLKQGYRHVHLLSK 113
Query: 117 S 117
+
Sbjct: 114 N 114
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 22/127 (17%)
Query: 640 WKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA-----SKWIRTRTVSDS-LEP 693
W+P + + +I + L P N S D V+ + + +T ++++ P
Sbjct: 1 WRP--ERLRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNP 57
Query: 694 RWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVY 753
RW+ ++ ++V P L + + + + IG+ I ++L+ G Y
Sbjct: 58 RWDMEFEFEVTVPDLALVRFMVEDYDSS----------SKNDFIGQSTIPWNSLKQG--Y 105
Query: 754 RNTYPLL 760
R LL
Sbjct: 106 R-HVHLL 111
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.0 bits (129), Expect = 4e-09
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI-----DYYGQRRKTHTAVRDLNPTWNEALEFN 59
L V ++ A NL D G S PYV ++RKT LNPT+NEAL F+
Sbjct: 20 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79
Query: 60 VGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEE 106
V P V + + Y N +G R+ G E
Sbjct: 80 V-APESVENVGLSIAVVD---YDCIGHNEVIGVCRVGPEAADPHGRE 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.1 bits (85), Expect = 0.003
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 24/123 (19%)
Query: 337 LFVRVVKARFLP-----TKGSPVVKIAVAN-----SRVESKPARRTSCFEWDQTFAFGRD 386
L V ++KA L P VK ++ + + ++ + T +++ F
Sbjct: 22 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81
Query: 387 SPESSSF-LEVSVWDPPRGDVAAPPGFLGGICFDVTEI---------PLRDPPDSPLAPQ 436
+ L ++V D +G + P P+
Sbjct: 82 PESVENVGLSIAVVDYDCIG---HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-H 137
Query: 437 WYR 439
W++
Sbjct: 138 WHQ 140
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.8 bits (128), Expect = 4e-09
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVI----DYYGQRRKTHTAVRDLNPTWNEALEFNV 60
+L V ++A + G YV +T R L+ TW E L +
Sbjct: 26 AELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82
Query: 61 GKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116
+ + + +R++ G +RL A + L+
Sbjct: 83 AEEELPTATL----TLTLRTCDRFSRHSVAGELRLGLDG-TSVPLGAAQWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 17/147 (11%)
Query: 309 STASFASDITDNIPIERSSFDLVEKMHYLFVRVVKARFLPTKGS--PVVKIAVANS---- 362
S+ S S + P D + LFV ++A G V+ +VAN
Sbjct: 2 SSGSSGSW--NQAPKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSV 59
Query: 363 RVESKPARRTSCFEWDQTFAFGRDSPESSSF-LEVSVWDPPRGDVAAPPGFLGGICFDVT 421
++ +R W++ E + L +++ R G + +
Sbjct: 60 EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS---RHSVAGELRLGLD 116
Query: 422 EIPLRDPPDSPLAPQWYRMEGGGAYSG 448
+ QW ++ G SG
Sbjct: 117 GTSVPLGAA-----QWGELKTSGPSSG 138
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 21/149 (14%), Positives = 36/149 (24%), Gaps = 28/149 (18%)
Query: 617 GGYHVMDEAA--HVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVV 674
G ++A H C DY +L V + N D YV
Sbjct: 4 GSSGSWNQAPKLHYCLDYDCQKAEL------FVT--RLEAVTS------NHDGGCDCYVQ 49
Query: 675 AKYASKWI----RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMET 730
A++ +T L W E + + A + +
Sbjct: 50 GSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR--------TCDR 101
Query: 731 TRPDCRIGKVRIRISTLETGKVYRNTYPL 759
G++R+ + L
Sbjct: 102 FSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.4 bits (127), Expect = 5e-09
Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR---RKTHTAVRDLNPTWNEALEFNVG 61
+L+V ++ A +L KD +G S PYV I R +T + LNP +NE +F+V
Sbjct: 18 DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV- 76
Query: 62 KPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRL-SSSQFVKKGEEALIYYPLEK 115
++ +++ + +R++ +G++ L + + ++ + ++ + +
Sbjct: 77 PLAELAQRKLHFSVYD---FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.3 bits (106), Expect = 3e-06
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 337 LFVRVVKARFLPTKGS--------PVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSP 388
L VR+++A LP K S + + + ++K R+T +++TF F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 389 E-SSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGG 444
E + L SV+D D + +G + D PPD PL W + GG
Sbjct: 80 ELAQRKLHFSVYD---FDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGG 130
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 51.4 bits (122), Expect = 3e-08
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 28/138 (20%)
Query: 6 KLIVEVVDARNLLPKD-----------GHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWN 53
L +++ +A +L P PY+ ++ R +T T + +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 54 EALEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEAL-IYYP 112
+ +V EL +FHD G ++F+ + + ++ G +
Sbjct: 67 DEFVTDVCNGR-----KIELAVFHDAPIGY---DDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 113 LEKKSLLSWIQGEVGLKI 130
LE +G+V + I
Sbjct: 119 LEP-------EGKVYVII 129
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 46.0 bits (108), Expect = 2e-06
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 31/150 (20%)
Query: 645 GTVELGVIGCKNLLPMKT--------VNGKSTTDAYVVAKYAS-KWIRTRTVSDSLEPRW 695
G +++ + +L P D Y+ + +T T + P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 696 NEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTL--ETGKVY 753
++++ V + + L VF I D + I+ L + +
Sbjct: 66 HDEFVTDVCNGRKIE-LAVFHDAPI-----------GYDDFVANCTIQFEELLQNGSRHF 113
Query: 754 RNTYPLLLLGSNGMTKMGEIEVAVRFIRTS 783
+ L G++ V + +S
Sbjct: 114 EDWIDL--------EPEGKVYVIIDLSGSS 135
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 40.6 bits (94), Expect = 2e-04
Identities = 15/138 (10%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 490 YLRATVIEAQDILPPVAALKEASFT----------IKAQLGFQVQKTKVSVTRNGTPSWN 539
L+ + EA + P +L++A I + + + +P+W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 540 EDLLFVAAEPFTDQLSFTLENRQHKGSVALGVTRVPLTAVERRVDDRKVASRWFTFENTN 599
++ + +L+ + + + + + + W E
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAP-IGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEP-- 121
Query: 600 DEKRAYKGRVHLRLCFDG 617
+G+V++ + G
Sbjct: 122 ------EGKVYVIIDLSG 133
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 14/137 (10%), Positives = 41/137 (29%), Gaps = 22/137 (16%)
Query: 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQR-----RKTHTAVRDLNPTWNEA 55
MA ++ + +L +D S P+ + + + P W
Sbjct: 1 MAPFLRISFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKST 58
Query: 56 LEFNVGKPPQVFTDMFELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEK 115
+ ++ + ++ + + + + + + K +A + L+
Sbjct: 59 FDAHI-----YEGRVIQIVLMRAAEDPMSEVTVGVSVL---AERCKKNNGKAEFWLDLQP 110
Query: 116 KSLLSWIQGEVGLKIYY 132
Q +V + + Y
Sbjct: 111 -------QAKVLMCVQY 120
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.6 bits (89), Expect = 6e-04
Identities = 9/129 (6%), Positives = 31/129 (24%), Gaps = 26/129 (20%)
Query: 656 NLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVL 710
L ++ + S + K + ++ P W + + V+
Sbjct: 13 ELGSLQAEDDAS--QPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVI 69
Query: 711 ALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKM 770
+ + + + +G + + L
Sbjct: 70 QIVLMRAAEDPMS----------EVTVGVSVLAERCKKNNGKAEFWLDL--------QPQ 111
Query: 771 GEIEVAVRF 779
++ + V++
Sbjct: 112 AKVLMCVQY 120
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 0.001
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 7 LIVEVVDARNLLPKDGHGTSSPYVVIDYYG--------QRRKTHTAVRDLNPTWNEALEF 58
L + V+ + L + YV ++ +G R K + +NP W E
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 59 NV 60
Sbjct: 59 FE 60
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 0.002
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 24/116 (20%)
Query: 337 LFVRVVKARFLPTKGS-PVVKIAVANSRVESKPARRTSC--------FEWDQ-TFAFGRD 386
L + V+ +FL + V++ + + K RT W + F F +
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62
Query: 387 SPESSSFLEVSVWDPPRGDVAAPPGFLGGICFDVTE-------IPLRDPPDSPLAP 435
+ L V+V + FLG + + L + PL
Sbjct: 63 LMPELASLRVAVME-------EGNKFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1061 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.91 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.91 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.9 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.87 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.86 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.85 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.85 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.84 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.83 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.82 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.82 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.82 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.8 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.8 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.79 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.79 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.77 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.77 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.75 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.75 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.74 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.73 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.73 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.71 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.71 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.71 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.68 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.59 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.51 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.44 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.13 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.1e-24 Score=160.70 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=82.2
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC
Q ss_conf 98549999999321899874469999888299999599588720137999981261999997548949999999599887
Q 001521 642 PPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIF 721 (1061)
Q Consensus 642 ~~~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~ 721 (1061)
+++|.|+|.|++|+||+++ |..|.+||||++.++++..+|+++.++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~---d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCS---SSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CCCEEEEEEEEEEECCCCC---CCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 8619999999982789887---8899969599997698588777407740578989999998436750089999936984
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEECCCCCCCCCCEEEEEEEEEE
Q ss_conf 888898879999961089999855125894775579402148999842349999999996
Q 001521 722 EGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIR 781 (1061)
Q Consensus 722 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 781 (1061)
+|++||++.|+|+.+..+. ..||.|......+..+ |+|+|++.+.+
T Consensus 80 -----------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~-G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 -----------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFK-GVIYLEMDLIY 125 (126)
T ss_dssp -----------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCS-SEEEEEEEEEE
T ss_pred -----------CCCEEEEEEEEHHHCCCCC--CEEEECCCCCCCCCEE-EEEEEEEEEEE
T ss_conf -----------7625899999989988999--6499841548997542-99999999997
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8e-24 Score=158.95 Aligned_cols=124 Identities=27% Similarity=0.503 Sum_probs=110.2
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 99983799999983279999999999949999997937776505899998240125996259999878849999965798
Q 001521 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 1 ~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~d~ 80 (1061)
+.+.|+|.|+|++|++|++++..|++||||++.+++++++|+++++++||.|||+|.|.+.+.. ..|.|+|||++.
T Consensus 2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~----~~L~i~V~d~~~ 77 (126)
T d2ep6a1 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH----DVLEVTVFDEDG 77 (126)
T ss_dssp CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTT----CEEEEEEEEEET
T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEEECCCEEEEEEEEEEEEEECCC----CEEEEEEEECCC
T ss_conf 7861999999998278988788999695999976985887774077405789899999984367----500899999369
Q ss_pred CCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 999988862099999785330108203599956225788714469999999993
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (1061)
+ ++|++||++.+++.++.. +. .+|+.|......+..+|+|++++.+..
T Consensus 78 ~---~~d~~lG~~~i~l~~l~~-~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 78 D---KPPDFLGKVAIPLLSIRD-GQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp T---EEEEECCBCEEEGGGCCS-SC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred C---CCCCEEEEEEEEHHHCCC-CC--CEEEECCCCCCCCCEEEEEEEEEEEEE
T ss_conf 8---476258999999899889-99--649984154899754299999999997
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.90 E-value=5.1e-23 Score=154.02 Aligned_cols=124 Identities=22% Similarity=0.313 Sum_probs=89.3
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCC-CCCCCEEECEEEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 99837999999832799999999999499999979377765058-99998240125996259999878849999965798
Q 001521 2 AAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAV-RDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 2 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~-~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~d~ 80 (1061)
++.|+|.|+|++|++|+.++..|++||||++.++++.++|++++ +++||.|||+|.|.+.... ..|.|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~----~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT----TELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSC----CEEEEEECCSSS
T ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCC----CEEEEEEEEECC
T ss_conf 9938999999995689898889997932899994553788899668872887069999973831----157999999569
Q ss_pred CCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCCCCCCEEEEEEEEEEEEEEC
Q ss_conf 9999888620999997853301082035999562257887144699999999937
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVDI 135 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 135 (1061)
+ ++|++||++.++|.++...+.....|+.|... .+..|+|++.+.|.+.
T Consensus 83 ~---~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 G---TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPS 131 (136)
T ss_dssp C---TTTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEEC
T ss_pred C---CCCCEEEEEEEEHHHHCCCCCCCCEEEEECCC---CCCCEEEEEEEEEEEC
T ss_conf 9---99988999999938711269867378786479---9457899999999848
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.87 E-value=1.7e-21 Score=144.63 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=106.7
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCC-CCCCCCCCEEEEEEECCCCEEEEEEEECCC
Q ss_conf 9985499999993218998744699998882999995995887201379-999812619999975489499999995998
Q 001521 641 KPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSD-SLEPRWNEQYTWKVYDPCTVLALGVFDSWG 719 (1061)
Q Consensus 641 ~~~~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~-~~~P~wne~~~~~v~~~~~~l~i~V~d~~~ 719 (1061)
..++|.|+|+|++|++|+++ |..|++||||++.+++...+|+++++ +.||.|||.|.|.+.+....|+|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~---d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSC---CSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCCEEEEEEEEEEECCCCC---CCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCEEEEEEEEECC
T ss_conf 89938999999995689898---889997932899994553788899668872887069999973831157999999569
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCC-CCEEEEEEECEECCCCCCCCCCEEEEEEEEEEC
Q ss_conf 878888988799999610899998551258-947755794021489998423499999999966
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLET-GKVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 782 (1061)
.+ +|++||++.|+|.++.. +.....||++... + +..|+|++.+.|.+.
T Consensus 83 ~~-----------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~-~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT-----------EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---E-EYKGEIWVALSFKPS 131 (136)
T ss_dssp CT-----------TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---T-EEEEEEEEEEEEEEC
T ss_pred CC-----------CCCEEEEEEEEHHHHCCCCCCCCEEEEECCC---C-CCCEEEEEEEEEEEC
T ss_conf 99-----------9988999999938711269867378786479---9-457899999999848
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.5e-20 Score=138.81 Aligned_cols=126 Identities=17% Similarity=0.261 Sum_probs=99.8
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEECCC
Q ss_conf 99983799999983279999999999949999997937776505899998240125996259999878849999965798
Q 001521 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKA 80 (1061)
Q Consensus 1 ~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~d~ 80 (1061)
|+-++.|.|+|++|++|+.++..+++||||++.++++.++|+++++++||.|||.|.|.+.+ ...|.|+|||++.
T Consensus 2 ~~~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-----~~~l~~~V~d~d~ 76 (133)
T d2nq3a1 2 LTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQT 76 (133)
T ss_dssp CSCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-----TCEEEEEEEECCS
T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEEE-----CCEEEEEEEECCC
T ss_conf 87553899999993999767788996959999999847843799703627876567999980-----2206999998268
Q ss_pred CCCCCCCCEEEEEEEECCCCEEC--CCE--EEEEEECCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 99998886209999978533010--820--3599956225788714469999999993
Q 001521 81 YGPTTRNNFLGRIRLSSSQFVKK--GEE--ALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 81 ~~~~~~d~~lG~~~i~l~~l~~~--~~~--~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (1061)
+ ++|++||++.++|.++... +.. ...|+.|..........|+|.+.+....
T Consensus 77 ~---~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 77 L---KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp S---SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred C---CCCCEEEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEEEE
T ss_conf 8---899468999999799341359952159999865788898327899999994388
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.85 E-value=1.4e-20 Score=139.07 Aligned_cols=116 Identities=21% Similarity=0.359 Sum_probs=62.4
Q ss_pred CCEEEEEEEEEECCCCCC-----------CCCCCCCEEEEEECCEE-EEEECCCCCCCCEEECEEEEEECCCCCCCCCEE
Q ss_conf 837999999832799999-----------99999949999997937-776505899998240125996259999878849
Q 001521 4 IQKLIVEVVDARNLLPKD-----------GHGTSSPYVVIDYYGQR-RKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMF 71 (1061)
Q Consensus 4 ~~~L~v~v~~a~~L~~~d-----------~~g~~dPyv~v~~~~~~-~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L 71 (1061)
.|+|.|+|++|++|++.+ ..+.+||||++.++++. .+|++++++.||.|||+|.|.+.+ .+.|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-----~~~l 79 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-----GRKI 79 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----ECEE
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEC-----CCCE
T ss_conf 89999999994799865344433324567888758379999189867670588498895396379999932-----7845
Q ss_pred EEEEEECCCCCCCCCCCEEEEEEEECCCCEECC-CEEEEEEECCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 999965798999988862099999785330108-203599956225788714469999999993
Q 001521 72 ELNIFHDKAYGPTTRNNFLGRIRLSSSQFVKKG-EEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 72 ~i~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (1061)
.|+|||++.+ ++|++||.+.+++.++...+ ...+.|++|.+ .|++++.+.+.+
T Consensus 80 ~i~V~d~~~~---~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 80 ELAVFHDAPI---GYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEEEEECCSS---SSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEEEEEECCC---CCCEEEEEEEEEHHHHHHCCCCCEEEEEECCC-------CCEEEEEEEEEE
T ss_conf 9999996689---87405789999979953168962248996778-------829999999990
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=7.1e-21 Score=140.85 Aligned_cols=118 Identities=21% Similarity=0.361 Sum_probs=73.7
Q ss_pred CCEEEEEEEEEECCCCC---CCCCCCCCEEEEEECC---EEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 83799999983279999---9999999499999979---37776505899998240125996259999878849999965
Q 001521 4 IQKLIVEVVDARNLLPK---DGHGTSSPYVVIDYYG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 4 ~~~L~v~v~~a~~L~~~---d~~g~~dPyv~v~~~~---~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d 77 (1061)
.+.|.|+|++|+||+.. |..|++||||++.+++ ++++|++++++.||.|||+|.|.+.+.. ...|.|+|||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~---~~~L~v~V~d 78 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEEE
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCC---CCCEEEEEEE
T ss_conf 7189999998608988636666889781899999773461167640478865010114501045841---2717999998
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 798999988862099999785330108203599956225788714469999999993
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (1061)
++.. +|++||++.+++.++. .+.....||+|.+.+ .|+|++.+.+.+
T Consensus 79 ~d~~----~d~~lG~~~i~L~~l~-~~~~~~~~~~L~~~~-----~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 79 ANYV----MDETLGTATFTVSSMK-VGEKKEVPFIFNQVT-----EMVLEMSLEVAS 125 (126)
T ss_dssp CCSS----CCEEEEEEEEEGGGSC-TTCEEEEEEEETTTE-----EEEEEEEEECCC
T ss_pred CCCC----CCCEEEEEEEEHHHCC-CCCEEEEEEECCCCC-----EEEEEEEEEEEE
T ss_conf 7997----8974899999988865-998388999834898-----089999999973
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2e-20 Score=138.07 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=98.8
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC---EEEEECCCCCCCCCCCCCEEEEEEECCC-CEEEEEEEECCC
Q ss_conf 549999999321899874469999888299999599---5887201379999812619999975489-499999995998
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS---KWIRTRTVSDSLEPRWNEQYTWKVYDPC-TVLALGVFDSWG 719 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~---~~~rT~~~~~~~~P~wne~~~~~v~~~~-~~l~i~V~d~~~ 719 (1061)
.+.|+|+|++|++|+.....|..|++||||++.+++ ++.||+++.++.||.|||.|.|.+.++. ..|.|.|||++.
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCEECEEEEECCCCCCCCCEEEEEEECCC
T ss_conf 71899999986089886366668897818999997734611676404788650101145010458412717999998799
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEECCCCCCCCCCEEEEEEEEE
Q ss_conf 8788889887999996108999985512589477557940214899984234999999999
Q 001521 720 IFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 720 ~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 780 (1061)
.+ |++||++.|+|+.|..+.....||+|.. .. .|.|++.+++.
T Consensus 82 ~~------------d~~lG~~~i~L~~l~~~~~~~~~~~L~~-----~~-~g~i~~~l~~~ 124 (126)
T d1rlwa_ 82 VM------------DETLGTATFTVSSMKVGEKKEVPFIFNQ-----VT-EMVLEMSLEVA 124 (126)
T ss_dssp SC------------CEEEEEEEEEGGGSCTTCEEEEEEEETT-----TE-EEEEEEEEECC
T ss_pred CC------------CCEEEEEEEEHHHCCCCCEEEEEEECCC-----CC-EEEEEEEEEEE
T ss_conf 78------------9748999999888659983889998348-----98-08999999997
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.83 E-value=1.1e-19 Score=133.62 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=98.6
Q ss_pred CEEEEEEEEEECCCCCCCC--------CCCCCCCCCEEEEEECCEEE-EECCCCCCCCCCCCCEEEEEEECCCCEEEEEE
Q ss_conf 5499999993218998744--------69999888299999599588-72013799998126199999754894999999
Q 001521 644 VGTVELGVIGCKNLLPMKT--------VNGKSTTDAYVVAKYASKWI-RTRTVSDSLEPRWNEQYTWKVYDPCTVLALGV 714 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~--------~d~~g~~dpyv~~~~~~~~~-rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~V 714 (1061)
.|.|+|+|++|++|++++. ....+.+||||+++++++.. +|+++.++.||.|||.|.|++.+. ..|+|+|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~V 83 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEECC-CCEEEEE
T ss_conf 899999999947998653444333245678887583799991898676705884988953963799999327-8459999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CEEEEEEECEECCCCCCCCCCEEEEEEEEEEC
Q ss_conf 959988788889887999996108999985512589--47755794021489998423499999999966
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETG--KVYRNTYPLLLLGSNGMTKMGEIEVAVRFIRT 782 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 782 (1061)
||++..+ +|++||++.|+|+++..+ .....|++|. ..|+|++++.+++.
T Consensus 84 ~d~~~~~-----------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 84 FHDAPIG-----------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS-----------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEECCCC-----------CCEEEEEEEEEHHHHHHCCCCCEEEEEECC--------CCCEEEEEEEEEEC
T ss_conf 9966898-----------740578999997995316896224899677--------88299999999907
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=5.1e-20 Score=135.61 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=69.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEECCCCCCCCCCCCCEEEEEEECC--CCEEEEEEEEC
Q ss_conf 499999993218998744699998882999995-----99588720137999981261999997548--94999999959
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYDP--CTVLALGVFDS 717 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~~~P~wne~~~~~v~~~--~~~l~i~V~d~ 717 (1061)
+.|.|.|++|+||+++ |..|.+||||++.+ +....+|+++.++.||.|||.|.|.+.++ ...|.|.|||+
T Consensus 15 ~~L~V~V~~a~~L~~~---d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCC---STTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEEEC
T ss_conf 9999999855499887---8998969089999826788866408841658899845549999957645697876997806
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEEC
Q ss_conf 988788889887999996108999985512589477557940214
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLL 762 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 762 (1061)
+..+ +|++||.+.|+++++..+. .++||+|...
T Consensus 92 d~~~-----------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS-----------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CSSS-----------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred CCCC-----------CCCEEEEEEEEHHHCCCCC-CCEEEECCCC
T ss_conf 7788-----------8967699999689948887-8828999788
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=4.1e-19 Score=130.06 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=56.5
Q ss_pred EEEEEEEEEECCCCC--CCCCCCCCEEEEEEC-----CEEEEEECCCC-CCCCEEECEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 799999983279999--999999949999997-----93777650589-9998240125996259999878849999965
Q 001521 6 KLIVEVVDARNLLPK--DGHGTSSPYVVIDYY-----GQRRKTHTAVR-DLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 6 ~L~v~v~~a~~L~~~--d~~g~~dPyv~v~~~-----~~~~~T~~~~~-~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d 77 (1061)
.|.|+|++|++|+.. +.+|++||||++.+. .++++|+++++ ++||.|||+|.|.+.... ...|.|+|||
T Consensus 5 ~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~---~~~L~~~V~D 81 (131)
T d1qasa2 5 RLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFMVED 81 (131)
T ss_dssp EEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG---GCEEEEEEEE
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCH---HCEEEEEEEE
T ss_conf 9999999922999778988998186999999667888578788889666579659779999977632---3258999998
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCCCCCCEEEEEEEEEEEE
Q ss_conf 7989999888620999997853301082035999562257887144699999999
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (1061)
+|.. ++|++||++.+++.++.. +..|++|....+..-..+.|.+++.+
T Consensus 82 ~d~~---~~d~~iG~~~i~l~~l~~----g~~~~~L~~~~g~~~~~~~L~v~i~~ 129 (131)
T d1qasa2 82 YDSS---SKNDFIGQSTIPWNSLKQ----GYRHVHLLSKNGDQHPSATLFVKISI 129 (131)
T ss_dssp CCTT---TCCEEEEEEEEEGGGBCC----EEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred ECCC---CCCCEEEEEEEEEECCCC----CCEEEECCCCCCCCCCCCEEEEEEEE
T ss_conf 0688---898688999999762678----77899898999599887789999999
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=1.5e-19 Score=132.67 Aligned_cols=106 Identities=31% Similarity=0.529 Sum_probs=74.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 8379999998327999999999994999999-----79377765058999982401259962599998788499999657
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDY-----YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~ 78 (1061)
.+.|.|+|++|+||+++|..|.+||||++.+ +..+++|+++++++||.|||+|.|.+..... ...|.|+|||+
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~L~i~V~d~ 91 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDW 91 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG--GCEEEEEEEEC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCC--CCEEEEEEEEC
T ss_conf 9999999985549988789989690899998267888664088416588998455499999576456--97876997806
Q ss_pred CCCCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCC
Q ss_conf 98999988862099999785330108203599956225
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKK 116 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 116 (1061)
|.+ ++|++||++.+++.++... ....||+|.+.
T Consensus 92 d~~---~~d~~iG~~~i~l~~l~~~--~~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLT---SRNDFMGSLSFGISELQKA--GVDGWFKLLSQ 124 (132)
T ss_dssp CSS---SCCEEEEEEEEEHHHHTTC--CEEEEEECBCH
T ss_pred CCC---CCCCEEEEEEEEHHHCCCC--CCCEEEECCCC
T ss_conf 778---8896769999968994888--78828999788
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=7.2e-19 Score=128.55 Aligned_cols=119 Identities=24% Similarity=0.332 Sum_probs=91.3
Q ss_pred CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE---CC
Q ss_conf 874314999999607732236754446898111001379985499999993218998744699998882999995---99
Q 001521 603 RAYKGRVHLRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPPVGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---AS 679 (1061)
Q Consensus 603 ~~~~G~i~l~i~l~~~~~~~d~~~~~~~d~~p~~~~~~~~~~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~~ 679 (1061)
....|+|.+++..+. ..+.|.|.|++|+||+++ |..|.+||||.+.+ +.
T Consensus 17 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~---~~~g~~dpyV~v~l~~~~~ 68 (143)
T d1rsya_ 17 EEKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKK 68 (143)
T ss_dssp -CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCC---STTSCCCEEEEEEEETTCC
T ss_pred HHCCEEEEEEEEEEC-------------------------CCCEEEEEEEECCCCCCC---CCCCCCCEEEEEEECCCCC
T ss_conf 105338999999959-------------------------999999999975089987---7899978079999858997
Q ss_pred EEEEECCCCCCCCCCCCCEEEEEEEC---CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEE
Q ss_conf 58872013799998126199999754---894999999959988788889887999996108999985512589477557
Q 001521 680 KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNT 756 (1061)
Q Consensus 680 ~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~V~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 756 (1061)
+..+|++++++.||.|||.|.|++.. ....|.|.|||++..+ ++++||.+.|+|+.+..+....+|
T Consensus 69 ~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~-----------~~~~iG~~~i~L~~~~~~~~~~~W 137 (143)
T d1rsya_ 69 KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS-----------KHDIIGEFKVPMNTVDFGHVTEEW 137 (143)
T ss_dssp SCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS-----------CCEEEEEEEEEGGGCCCSSCEEEE
T ss_pred EEEEEEEECCCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCC-----------CCCEEEEEEEECHHCCCCCCCCCE
T ss_conf 168888865666831223169999853158846999999838988-----------896799999982033499997028
Q ss_pred EECE
Q ss_conf 9402
Q 001521 757 YPLL 760 (1061)
Q Consensus 757 ~~L~ 760 (1061)
|+|+
T Consensus 138 ~~L~ 141 (143)
T d1rsya_ 138 RDLQ 141 (143)
T ss_dssp EECB
T ss_pred EECC
T ss_conf 8388
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=9.7e-19 Score=127.78 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=92.8
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEECCCCCC-CCCCCCCEEEEEEECCC-CEEEEEEEEC
Q ss_conf 499999993218998744699998882999995-----9958872013799-99812619999975489-4999999959
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDS-LEPRWNEQYTWKVYDPC-TVLALGVFDS 717 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~-~~P~wne~~~~~v~~~~-~~l~i~V~d~ 717 (1061)
..|.|+|++|++|+.. ..+.+|++||||++.+ +....+|++++++ +||.|||.|.|.+..+. ..|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~-~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKV-NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCC-C-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEEECCCCC-CCCCCCCCCEEEEEEECCCCCCCEEEEEEEEECCCCCCEEEEEEEEEEECCHHCEEEEEEEEE
T ss_conf 7999999992299977-898899818699999966788857878888966657965977999997763232589999980
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEECCCCCCCCCCEEEEEEEEE
Q ss_conf 988788889887999996108999985512589477557940214899984234999999999
Q 001521 718 WGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 718 ~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 780 (1061)
|..+ +|++||++.|+|+.+..|. +|+||......... .++|.+.+.++
T Consensus 83 d~~~-----------~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~~-~~~L~v~i~~~ 130 (131)
T d1qasa2 83 DSSS-----------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHP-SATLFVKISIQ 130 (131)
T ss_dssp CTTT-----------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEE-EEEEEEEEEEE
T ss_pred CCCC-----------CCCEEEEEEEEEECCCCCC---EEEECCCCCCCCCC-CCEEEEEEEEE
T ss_conf 6888-----------9868899999976267877---89989899959988-77899999998
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-18 Score=127.02 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=91.7
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCC
Q ss_conf 54999999932189987446999988829999959958872013799998126199999754894999999959988788
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASKWIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEG 723 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~ 723 (1061)
.+.|.|+|++|++|... +..+++||||++.+|++..+|++++++.||.|||.|.|++. +.+.|+|+|||++.++
T Consensus 5 ~~~L~v~v~~A~~~~~~---~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~-- 78 (133)
T d2nq3a1 5 KSQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK-- 78 (133)
T ss_dssp CEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS--
T ss_pred CEEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCEEEEEEEEEECCCEEECCEEEEEEE-ECCEEEEEEEECCCCC--
T ss_conf 53899999993999767---78899695999999984784379970362787656799998-0220699999826888--
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCC---CCCEEEEEEECEEC-CCCCCCCCCEEEEEEEE
Q ss_conf 8898879999961089999855125---89477557940214-89998423499999999
Q 001521 724 ENGSMETTRPDCRIGKVRIRISTLE---TGKVYRNTYPLLLL-GSNGMTKMGEIEVAVRF 779 (1061)
Q Consensus 724 ~~~~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~-~~~g~~~~G~i~l~~~f 779 (1061)
+|++||++.|+|+++. .+.....+++|... ..++....|+|.+.+.+
T Consensus 79 ---------~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 ---------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp ---------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred ---------CCCEEEEEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEEE
T ss_conf ---------994689999997993413599521599998657888983278999999943
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=9e-19 Score=127.97 Aligned_cols=99 Identities=13% Similarity=0.250 Sum_probs=55.3
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 37999999832799999999999499999979377765058999982401259962599998788499999657989999
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDYYGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDKAYGPT 84 (1061)
Q Consensus 5 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~d~~~~~ 84 (1061)
++|+|+|++|++|.+++ ++||||++.+++++.+|.+++ +.||.|||+|.|.+..+. ..|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~----~~L~v~V~d~~~~--- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLD----LGLTVEVWNKGLI--- 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCS----SEEEEEEEECCSS---
T ss_pred EEEEEEEEEEECCCCCC---CCCEEEEEEECCEEEEEEEEC-CCCCEEEEEEEEEECCCC----CEEEEEEEECCCC---
T ss_conf 38999999988898988---868099999599989998746-899838999988514665----2599999967876---
Q ss_pred CCCCEEEEEEEECCCCEECCC-EEEEEEECCC
Q ss_conf 888620999997853301082-0359995622
Q 001521 85 TRNNFLGRIRLSSSQFVKKGE-EALIYYPLEK 115 (1061)
Q Consensus 85 ~~d~~lG~~~i~l~~l~~~~~-~~~~w~~L~~ 115 (1061)
+|++||++.|++.++...+. ...+||+|..
T Consensus 71 -~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 71 -WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp -CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred -CCCCEEEEEEEEHHHCCCCCCCCCEEEECCC
T ss_conf -7861499999943301478878885078886
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=5.3e-19 Score=129.40 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=72.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEEE---CCEEEEEEEEECCCCCCCCCCEEEEEECCC--CCCEEEEEEEECCC-
Q ss_conf 999999996189998446899972999999---981335654454899971023369732068--88818999996249-
Q 001521 490 YLRATVIEAQDILPPVAALKEASFTIKAQL---GFQVQKTKVSVTRNGTPSWNEDLLFVAAEP--FTDQLSFTLENRQH- 563 (1061)
Q Consensus 490 ~L~V~V~~a~~L~~~~d~~~~~dpyv~v~l---g~~~~kT~~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~D~~~- 563 (1061)
.|+|+|++|+||+.. +.++.+||||++.+ +.+..+|+++. ++.||.|||.|.|.+... ....|.|.|||++.
T Consensus 35 ~L~V~V~~a~~L~~~-~~~g~~dpyV~v~l~~~~~~~~kT~~~~-~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~ 112 (143)
T d1rsya_ 35 QLLVGIIQAAELPAL-DMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF 112 (143)
T ss_dssp EEEEEEEEEESCCCC-STTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS
T ss_pred EEEEEEEECCCCCCC-CCCCCCCEEEEEEECCCCCEEEEEEEEC-CCCCCCEEEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 999999975089987-7899978079999858997168888865-66683122316999985315884699999983898
Q ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCC
Q ss_conf 9981539999806431222356544445798435
Q 001521 564 KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 564 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
+++++||.+.|+|+++... ....+||+|+.
T Consensus 113 ~~~~~iG~~~i~L~~~~~~----~~~~~W~~L~s 142 (143)
T d1rsya_ 113 SKHDIIGEFKVPMNTVDFG----HVTEEWRDLQS 142 (143)
T ss_dssp SCCEEEEEEEEEGGGCCCS----SCEEEEEECBC
T ss_pred CCCCEEEEEEEECHHCCCC----CCCCCEEECCC
T ss_conf 8896799999982033499----99702883888
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3e-19 Score=130.91 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=39.2
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE---CCEEEEECCCCCCCCCCCCCEEEEEEECC---CCEEEEEEEECC
Q ss_conf 499999993218998744699998882999995---99588720137999981261999997548---949999999599
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDSW 718 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~---~~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~V~d~~ 718 (1061)
+.|.|.|++|+||++. +..|.+||||.+.+ +.+..+|++++++.||.|||.|.|.+... ...|.|+|||++
T Consensus 18 ~~L~V~V~~a~~L~~~---~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 18 DQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp CEEEEEEEEEECCCCC---STTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCEEEEEEECCCCCCEEECEEECCCCCEEEEEEEEEEECHHHCCCCEEEEEEEECC
T ss_conf 9999999860489641---6899756678999716787518660476877706526788988457718986999998768
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 88788889887999996108999985
Q 001521 719 GIFEGENGSMETTRPDCRIGKVRIRI 744 (1061)
Q Consensus 719 ~~~~~~~~~~~~~~~d~~lG~~~i~l 744 (1061)
..+ +|++||++.|++
T Consensus 95 ~~~-----------~d~~iG~~~i~~ 109 (130)
T d1dqva1 95 RFS-----------RHDLIGQVVLDN 109 (130)
T ss_dssp SSS-----------CCCEEEEEECCC
T ss_pred CCC-----------CCCEEEEEEECC
T ss_conf 899-----------986689999876
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=9.8e-19 Score=127.75 Aligned_cols=98 Identities=24% Similarity=0.349 Sum_probs=44.0
Q ss_pred CCEEEEEEEEEECCCC--CCCCEEEEEECCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCC
Q ss_conf 5389999999405999--99968999988934330410389995264399994069999984999999399999999998
Q 001521 334 MHYLFVRVVKARFLPT--KGSPVVKIAVANSRVESKPARRTSCFEWDQTFAFGRDSPESSSFLEVSVWDPPRGDVAAPPG 411 (1061)
Q Consensus 334 ~~~L~V~v~~a~~L~~--~~dpyV~v~~~~~~~~T~~~~~t~nP~Wne~f~f~v~~~~~~~~L~i~V~D~d~~~~~~~d~ 411 (1061)
|++|+|+|++|++|.+ ++||||++++++.+.+|++++ +.||.|||.|.|.+.++ ...|.|+|||++. .+|+
T Consensus 1 ~~~L~V~v~~a~~l~~~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~----~~d~ 73 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGL----IWDT 73 (128)
T ss_dssp CEEEEEEEEEEECSSCGGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCS----SCEE
T ss_pred CEEEEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEEC-CCCCEEEEEEEEEECCC--CCEEEEEEEECCC----CCCC
T ss_conf 938999999988898988868099999599989998746-89983899998851466--5259999996787----6786
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCEEEECC
Q ss_conf 009999987446788999999987159833
Q 001521 412 FLGGICFDVTEIPLRDPPDSPLAPQWYRME 441 (1061)
Q Consensus 412 ~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~ 441 (1061)
+||++.|+|.++... +.....+||+|.
T Consensus 74 ~lG~~~I~L~~l~~~---~~~~~~~W~~L~ 100 (128)
T d2cjta1 74 MVGTVWIPLRTIRQS---NEEGPGEWLTLD 100 (128)
T ss_dssp EEEEEEEEGGGSCBC---SSCCCCEEEECB
T ss_pred CEEEEEEEEHHHCCC---CCCCCCEEEECC
T ss_conf 149999994330147---887888507888
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.6e-20 Score=137.40 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=50.4
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCE--------------EEEECCCCCCCCCCCCCEEEEEEEC----C
Q ss_conf 499999993218998744699998882999995995--------------8872013799998126199999754----8
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK--------------WIRTRTVSDSLEPRWNEQYTWKVYD----P 706 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~--------------~~rT~~~~~~~~P~wne~~~~~v~~----~ 706 (1061)
|.|.|.|++|+||+++ |..|.+||||.+.+.+. ..||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~---d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCC---SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEEECCCCC---CCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 9999999973899886---7899979478999946766310002578835043467838888346789987522333467
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEE
Q ss_conf 9499999995998878888988799999610899998551258947755794021
Q 001521 707 CTVLALGVFDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLL 761 (1061)
Q Consensus 707 ~~~l~i~V~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 761 (1061)
...|.|.|||++..+ +|++||++.|+|+.+..+.....||+|..
T Consensus 95 ~~~L~i~V~d~d~~~-----------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~ 138 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS-----------SNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138 (142)
T ss_dssp TCEEEEEEEEECSSS-----------CEEEEEEEEEETTSCGGGTTCCEEEECBC
T ss_pred CCEEEEEEEEECCCC-----------CCEEEEEEEEEHHHCCCCCCCEEEEECCC
T ss_conf 787999999705899-----------98146899998677578898609997938
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=1.5e-19 Score=132.79 Aligned_cols=101 Identities=17% Similarity=0.320 Sum_probs=44.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEECC--------------EEEEEEEEECCCCCCCCCCEEEEEECCC---CCCE
Q ss_conf 9999999618999844689997299999998--------------1335654454899971023369732068---8881
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF--------------QVQKTKVSVTRNGTPSWNEDLLFVAAEP---FTDQ 553 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~--------------~~~kT~~~~~~t~nP~w~e~f~f~v~~~---~~~~ 553 (1061)
|.|+|++|+||+.. |.++.+||||++.+.. ++.||+++. ++.||.|||.|.|..... ....
T Consensus 20 L~V~V~~A~~L~~~-d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~~~~~ 97 (142)
T d1rh8a_ 20 LIIHILQARNLVPR-DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQLMKKT 97 (142)
T ss_dssp EEEEEEEEESCCCC-SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHHTTCE
T ss_pred EEEEEEEEECCCCC-CCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCC-CCCCCEEEEEEEEEEECCCCCCCCE
T ss_conf 99999973899886-789997947899994676631000257883504346783-8888346789987522333467787
Q ss_pred EEEEEEECCC-CCCCEEEEEEEECCCCCCCCCCCCCCCEEEECCC
Q ss_conf 8999996249-9981539999806431222356544445798435
Q 001521 554 LSFTLENRQH-KGSVALGVTRVPLTAVERRVDDRKVASRWFTFEN 597 (1061)
Q Consensus 554 L~i~V~D~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~ 597 (1061)
|.|.|||++. +++++||.+.|+|.++... ....+||+|+.
T Consensus 98 L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~----~~~~~W~~L~~ 138 (142)
T d1rh8a_ 98 LEVTVWDYDRFSSNDFLGEVLIDLSSTSHL----DNTPRWYPLKE 138 (142)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEETTSCGGG----TTCCEEEECBC
T ss_pred EEEEEEEECCCCCCEEEEEEEEEHHHCCCC----CCCEEEEECCC
T ss_conf 999999705899981468999986775788----98609997938
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.5e-18 Score=125.26 Aligned_cols=107 Identities=23% Similarity=0.461 Sum_probs=48.3
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCEEEEEE-----CCEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEEC
Q ss_conf 8379999998327999999999994999999-----79377765058999982401259962599998788499999657
Q 001521 4 IQKLIVEVVDARNLLPKDGHGTSSPYVVIDY-----YGQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHD 78 (1061)
Q Consensus 4 ~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~-----~~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~ 78 (1061)
.+.|.|+|++|+||++++..+.+||||++.+ ...+++|+++++++||.|||+|.|............|.|+|||+
T Consensus 13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~ 92 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 92 (125)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEEEEC
T ss_conf 99999999982799886799998978999996778886412167786899989853999960386662888799999988
Q ss_pred CCCCCCCCCCEEEEEEEECCCCEECCCEEEEEEEC
Q ss_conf 98999988862099999785330108203599956
Q 001521 79 KAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPL 113 (1061)
Q Consensus 79 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 113 (1061)
+.... +++++||++.+++.++...+. .+||+|
T Consensus 93 ~~~~~-~~~~~iG~~~i~l~~~~~~~~--~~Wy~L 124 (125)
T d2bwqa1 93 ARVRE-EESEFLGEILIELETALLDDE--PHWYKL 124 (125)
T ss_dssp --------CEEEEEEEEEGGGCCCSSC--EEEEEC
T ss_pred CCCCC-CCCEEEEEEEEECHHCCCCCC--CEEEEC
T ss_conf 88889-999069999998055088999--998959
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.1e-17 Score=119.58 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=56.1
Q ss_pred EEEEEEEEEECCCCCCCCCCCC-CCCCCEEEEEE---CCEEEEECCCCCCCCCCCCCEEEEEEECC----CCEEEEEEEE
Q ss_conf 4999999932189987446999-98882999995---99588720137999981261999997548----9499999995
Q 001521 645 GTVELGVIGCKNLLPMKTVNGK-STTDAYVVAKY---ASKWIRTRTVSDSLEPRWNEQYTWKVYDP----CTVLALGVFD 716 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~-g~~dpyv~~~~---~~~~~rT~~~~~~~~P~wne~~~~~v~~~----~~~l~i~V~d 716 (1061)
+.|.|+|++|+||+.+ |.. +.+||||.+.+ +....+|++++++.||.|||.|.|..... ...|+|.|||
T Consensus 22 ~~L~V~V~~a~~L~~~---d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d 98 (138)
T d1ugka_ 22 KAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS 98 (138)
T ss_dssp TEEEEEEEEEESCCCC---BTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred CEEEEEEEEECCCCCC---CCCCCCCCEEEEEEECCCCCEEEECEEEECCCCCCEEEEEEEEEECHHHCCCCEEEEEEEE
T ss_conf 9999999981098988---8999865339999992899986707147677897445689996128899556558999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99887888898879999961089999855125
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLE 748 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 748 (1061)
++..+ +|++||.+.|+|+++.
T Consensus 99 ~d~~~-----------~~~~iG~~~i~L~~~~ 119 (138)
T d1ugka_ 99 FDRFS-----------RDDIIGEVLIPLSGIE 119 (138)
T ss_dssp ECSSC-----------CCCCCEEEEEECTTCC
T ss_pred CCCCC-----------CCCEEEEEEEECCCCC
T ss_conf 99988-----------8957899999834165
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.2e-17 Score=118.43 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=67.9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC----EEEEECCCCCCCCCCCCCEEEEEEEC---CCCEEEEEEEE
Q ss_conf 549999999321899874469999888299999599----58872013799998126199999754---89499999995
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYAS----KWIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVFD 716 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~----~~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~V~d 716 (1061)
.+.|.|+|++|++|. ..|.+||||.+.+.+ ...+|++++++.||.|||.|.|++.. ....|.|+|||
T Consensus 25 ~~~L~V~v~~a~~L~------~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d 98 (138)
T d1wfma_ 25 KAELFVTRLEAVTSN------HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRT 98 (138)
T ss_dssp TTEEEEEEEEEECCC------CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEE
T ss_pred CCEEEEEEEECCCCC------CCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCCCEEEEEEEEE
T ss_conf 999999999867989------89983837999987998854253038777899538130899865101662189998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEECC
Q ss_conf 99887888898879999961089999855125894775579402148
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
++..+ ++++||++.|+|+++..+...+.||+|...+
T Consensus 99 ~~~~~-----------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 99 CDRFS-----------RHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp CCSSC-----------TTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred ECCCC-----------CCEEEEEEEEEHHHCCCCCCCEEEEECCCCC
T ss_conf 05566-----------3145459999857734898865969588899
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.8e-17 Score=120.06 Aligned_cols=88 Identities=25% Similarity=0.332 Sum_probs=46.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEC--CEE---EEECCCCCCCCCCCCCEEEEEEECC---CCEEEEEEEE
Q ss_conf 4999999932189987446999988829999959--958---8720137999981261999997548---9499999995
Q 001521 645 GTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYA--SKW---IRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFD 716 (1061)
Q Consensus 645 g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~--~~~---~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~V~d 716 (1061)
+.|.|.|++|+||++. +..+.+||||.+.+. +.. .+|++++++.||.|||.|.|++... ...|.|.|||
T Consensus 25 ~~L~V~V~~a~~L~~~---~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d 101 (157)
T d1uowa_ 25 GKLTVVILEAKNLKKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD 101 (157)
T ss_dssp TEEEEEEEEEESCCCC---STTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred CEEEEEEEEEEECCCC---CCCCCCCEEEEEEEECCCCCCCCEECCCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEECC
T ss_conf 9999999997971365---5799979069999953886234501102368889636776999960899376389999815
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 998878888988799999610899998551
Q 001521 717 SWGIFEGENGSMETTRPDCRIGKVRIRIST 746 (1061)
Q Consensus 717 ~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~ 746 (1061)
++.++ ++++||++.|++..
T Consensus 102 ~~~~~-----------~~~~iG~~~i~l~~ 120 (157)
T d1uowa_ 102 YDKIG-----------KNDAIGKVFVGYNS 120 (157)
T ss_dssp CCSSS-----------CCCEEEEEEEETTC
T ss_pred CCCCC-----------CCCEEEEEEEECCC
T ss_conf 69888-----------88466999980600
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.4e-17 Score=118.27 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCCEEEEEEEEEECCCC--CCCCEEEEEECC----EEEEECCCCCCCCCEEEEEEEEECCC--CCCCCEEEEEEECCCCC
Q ss_conf 45389999999405999--999689999889----34330410389995264399994069--99998499999939999
Q 001521 333 KMHYLFVRVVKARFLPT--KGSPVVKIAVAN----SRVESKPARRTSCFEWDQTFAFGRDS--PESSSFLEVSVWDPPRG 404 (1061)
Q Consensus 333 ~~~~L~V~v~~a~~L~~--~~dpyV~v~~~~----~~~~T~~~~~t~nP~Wne~f~f~v~~--~~~~~~L~i~V~D~d~~ 404 (1061)
+...|.|+|++|++|+. .+||||++.+.+ ..++|++++++.||+|||.|.|.+.. +. ...|.|.|||.+.
T Consensus 24 ~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~-~~~L~~~V~d~~~- 101 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP-TATLTLTLRTCDR- 101 (138)
T ss_dssp TTTEEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSST-TCEEEEEEEECCS-
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEEEEEHHCC-CEEEEEEEEEECC-
T ss_conf 89999999998679898998383799998799885425303877789953813089986510166-2189998742055-
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 9999998009999987446788999999987159833887
Q 001521 405 DVAAPPGFLGGICFDVTEIPLRDPPDSPLAPQWYRMEGGG 444 (1061)
Q Consensus 405 ~~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~w~~L~~~~ 444 (1061)
++++++||.+.|+|.++.. .....+|+.|+...
T Consensus 102 --~~~~~~iG~~~i~L~~l~~-----~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 102 --FSRHSVAGELRLGLDGTSV-----PLGAAQWGELKTSG 134 (138)
T ss_dssp --SCTTSCSEEEEEESSSSSS-----CTTCCEEEECCCCS
T ss_pred --CCCCEEEEEEEEEHHHCCC-----CCCCEEEEECCCCC
T ss_conf --6631454599998577348-----98865969588899
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=4.3e-17 Score=117.69 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=25.4
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEECCCCCCCCCCCCCEEEEEEECC---CCEEEEEEEEC
Q ss_conf 99999993218998744699998882999995-----99588720137999981261999997548---94999999959
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYDP---CTVLALGVFDS 717 (1061)
Q Consensus 646 ~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~~~P~wne~~~~~v~~~---~~~l~i~V~d~ 717 (1061)
.|.|.|++|+||++. +..|.+||||.+.+ .....+|++++++.||.|||.|.|++... ...|.|.|||+
T Consensus 16 ~L~V~v~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~ 92 (137)
T d2cm5a1 16 GLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY 92 (137)
T ss_dssp EEEEEEEEEESCCCC---STTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred EEEEEEEEEECCCCC---CCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHCCCCEEEEEEEEC
T ss_conf 999999998789997---77877686999999768866566368757189998566499999687885612999976617
Q ss_pred CC
Q ss_conf 98
Q 001521 718 WG 719 (1061)
Q Consensus 718 ~~ 719 (1061)
+.
T Consensus 93 ~~ 94 (137)
T d2cm5a1 93 DI 94 (137)
T ss_dssp CS
T ss_pred CC
T ss_conf 99
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=3.3e-17 Score=118.35 Aligned_cols=85 Identities=18% Similarity=0.152 Sum_probs=42.9
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEC---CEEEEEEEEECCCCCCCCCCEEEEEECCC--CCCEEEEEEEECCC-C
Q ss_conf 999999961899984468999729999999---81335654454899971023369732068--88818999996249-9
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLG---FQVQKTKVSVTRNGTPSWNEDLLFVAAEP--FTDQLSFTLENRQH-K 564 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg---~~~~kT~~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~D~~~-~ 564 (1061)
|+|+|++|+||+.. +.++.+||||++.+. .+..+|+++. ++.||.|||.|.|.+... ....|.|+|||++. +
T Consensus 20 L~V~V~~a~~L~~~-~~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~~~ 97 (130)
T d1dqva1 20 LVVRILQALDLPAK-DSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 97 (130)
T ss_dssp EEEEEEEEECCCCC-STTSCCCEEEEEECTTSTTSCEECCCCC-SCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS
T ss_pred EEEEEEEEECCCCC-CCCCCCCEEEEEEECCCCCCEEECEEEC-CCCCEEEEEEEEEEECHHHCCCCEEEEEEEECCCCC
T ss_conf 99999860489641-6899756678999716787518660476-877706526788988457718986999998768899
Q ss_pred CCCEEEEEEEECC
Q ss_conf 9815399998064
Q 001521 565 GSVALGVTRVPLT 577 (1061)
Q Consensus 565 ~d~~lG~~~i~l~ 577 (1061)
++++||.+.|++.
T Consensus 98 ~d~~iG~~~i~~~ 110 (130)
T d1dqva1 98 RHDLIGQVVLDNL 110 (130)
T ss_dssp CCCEEEEEECCCT
T ss_pred CCCEEEEEEECCH
T ss_conf 9866899998761
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=3.8e-17 Score=117.98 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=66.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-----CCEEEEECCCCCCCCCCCCCEEEEEEEC----CCCEEEEEE
Q ss_conf 5499999993218998744699998882999995-----9958872013799998126199999754----894999999
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-----ASKWIRTRTVSDSLEPRWNEQYTWKVYD----PCTVLALGV 714 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-----~~~~~rT~~~~~~~~P~wne~~~~~v~~----~~~~l~i~V 714 (1061)
.+.|.|+|++|+||++. +..+.+||||++.+ .....+|++++++.||.|||.|.|.... ....|.|.|
T Consensus 13 ~~~L~V~V~~a~~L~~~---~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v 89 (125)
T d2bwqa1 13 GHQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 89 (125)
T ss_dssp TTEEEEEEEEEESCCCC---TTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEEECCCCC---CCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCCEECCEEEEEEECHHHCCCCEEEEEE
T ss_conf 99999999982799886---799998978999996778886412167786899989853999960386662888799999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECE
Q ss_conf 9599887888898879999961089999855125894775579402
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
||.+..+. .++++||++.|+|+.+..... .+||+|+
T Consensus 90 ~d~~~~~~---------~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 90 WDQARVRE---------EESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEC----------------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EECCCCCC---------CCCEEEEEEEEECHHCCCCCC-CEEEECC
T ss_conf 98888889---------999069999998055088999-9989594
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=3.7e-17 Score=118.11 Aligned_cols=90 Identities=28% Similarity=0.405 Sum_probs=31.1
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCEEEEEE--CC---EEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEECC
Q ss_conf 379999998327999999999994999999--79---3777650589999824012599625999987884999996579
Q 001521 5 QKLIVEVVDARNLLPKDGHGTSSPYVVIDY--YG---QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFHDK 79 (1061)
Q Consensus 5 ~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~--~~---~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d~d 79 (1061)
+.|.|+|++|+||+.++..+.+||||++.+ ++ .+++|++++++.||.|||+|.|.+..... ....|.|.|||++
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~-~~~~l~i~v~d~~ 93 (138)
T d1w15a_ 15 NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL-EEISVEFLVLDSE 93 (138)
T ss_dssp TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS-TTEEEEEEEEECC
T ss_pred CEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCEECCEEEEEECHHHH-CCCEEEEEEEECC
T ss_conf 999999999688999888998578999999577426764355318899997377479998237992-7558999998679
Q ss_pred CCCCCCCCCEEEEEEEECC
Q ss_conf 8999988862099999785
Q 001521 80 AYGPTTRNNFLGRIRLSSS 98 (1061)
Q Consensus 80 ~~~~~~~d~~lG~~~i~l~ 98 (1061)
.+ +++++||++.+++.
T Consensus 94 ~~---~~~~~iG~~~i~l~ 109 (138)
T d1w15a_ 94 RG---SRNEVIGRLVLGAT 109 (138)
T ss_dssp TT---SCCEEEEEEEESTT
T ss_pred CC---CCCCEEEEEEECCH
T ss_conf 98---88978899998660
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.8e-16 Score=111.89 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=49.9
Q ss_pred EEEEEEEEECCCCCCCCCCC-CCEEEEEEE---CCEEEEEEEEECCCCCCCCCCEEEEEECCCC---CCEEEEEEEECCC
Q ss_conf 99999996189998446899-972999999---9813356544548999710233697320688---8818999996249
Q 001521 491 LRATVIEAQDILPPVAALKE-ASFTIKAQL---GFQVQKTKVSVTRNGTPSWNEDLLFVAAEPF---TDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~-~dpyv~v~l---g~~~~kT~~~~~~t~nP~w~e~f~f~v~~~~---~~~L~i~V~D~~~ 563 (1061)
|+|+|++|+||+.. |..+. +||||++.+ +.+..+|+++. ++.||.|||.|.|...... ...|.|.|||.+.
T Consensus 24 L~V~V~~a~~L~~~-d~~~~~~dpyV~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~ 101 (138)
T d1ugka_ 24 FVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDR 101 (138)
T ss_dssp EEEEEEEEESCCCC-BTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECS
T ss_pred EEEEEEEECCCCCC-CCCCCCCCEEEEEEECCCCCEEEECEEEE-CCCCCCEEEEEEEEEECHHHCCCCEEEEEEEECCC
T ss_conf 99999981098988-89998653399999928999867071476-77897445689996128899556558999998999
Q ss_pred -CCCCEEEEEEEECCCCC
Q ss_conf -99815399998064312
Q 001521 564 -KGSVALGVTRVPLTAVE 580 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~l~ 580 (1061)
+++++||.+.|+|+++.
T Consensus 102 ~~~~~~iG~~~i~L~~~~ 119 (138)
T d1ugka_ 102 FSRDDIIGEVLIPLSGIE 119 (138)
T ss_dssp SCCCCCCEEEEEECTTCC
T ss_pred CCCCCEEEEEEEECCCCC
T ss_conf 888957899999834165
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=3.3e-16 Score=112.27 Aligned_cols=93 Identities=22% Similarity=0.390 Sum_probs=52.5
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEC-----CEEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 983799999983279999999999949999997-----937776505899998240125996259999878849999965
Q 001521 3 AIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYY-----GQRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNIFH 77 (1061)
Q Consensus 3 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~-----~~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v~d 77 (1061)
..+.|.|+|++|+||+.++..+.+||||++.+. ..+++|++++++.||.|||+|.|.+...+. ....|.|.|||
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l-~~~~l~v~v~~ 91 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL-AKKSLDISVWD 91 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG-GGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCEEECCEEECCCCCCCCCEEEEEEEEHHHC-CCCEEEEEEEE
T ss_conf 99999999999878999777877686999999768866566368757189998566499999687885-61299997661
Q ss_pred CCCCCCCCCCCEEEEEEEECCC
Q ss_conf 7989999888620999997853
Q 001521 78 DKAYGPTTRNNFLGRIRLSSSQ 99 (1061)
Q Consensus 78 ~d~~~~~~~d~~lG~~~i~l~~ 99 (1061)
++.+ +++++||++.+++..
T Consensus 92 ~~~~---~~~~~iG~~~i~l~~ 110 (137)
T d2cm5a1 92 YDIG---KSNDYIGGCQLGISA 110 (137)
T ss_dssp CCSS---SCCEEEEEEEEETTC
T ss_pred CCCC---CCCCEEEEEEECCCC
T ss_conf 7999---888799998747300
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.9e-16 Score=112.60 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=61.0
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEEC--C---EEEEEEEEECCCCCCCCCCEEEEEECCCC--CCEEEEEEEECCC
Q ss_conf 999999961899984468999729999999--8---13356544548999710233697320688--8818999996249
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLG--F---QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~V~D~~~ 563 (1061)
|.|.|++|+||+.. +.++.+||||++.+. + ...+|++.+ ++.||+|||.|.|.+..+. ...|.|.|||++.
T Consensus 27 L~V~V~~a~~L~~~-~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~ 104 (157)
T d1uowa_ 27 LTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 104 (157)
T ss_dssp EEEEEEEEESCCCC-STTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCS
T ss_pred EEEEEEEEEECCCC-CCCCCCCEEEEEEEECCCCCCCCEECCCCC-CCCCCCCCCEEEEEECHHHCCCCEEEEEECCCCC
T ss_conf 99999997971365-579997906999995388623450110236-8889636776999960899376389999815698
Q ss_pred -CCCCEEEEEEEECCCCCCCC--------CCCCCCCEEEECCC
Q ss_conf -99815399998064312223--------56544445798435
Q 001521 564 -KGSVALGVTRVPLTAVERRV--------DDRKVASRWFTFEN 597 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~l~~~~--------~~~~~~~~w~~L~~ 597 (1061)
+++++||++.|++....... ..+....+|+.|+.
T Consensus 105 ~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 105 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8888466999980600881677899998589983007674899
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.7e-16 Score=112.82 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=35.7
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEE--CC---EEEEEEEEECCCCCCCCCCEEEEEECCCC--CCEEEEEEEECCC
Q ss_conf 99999996189998446899972999999--98---13356544548999710233697320688--8818999996249
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQL--GF---QVQKTKVSVTRNGTPSWNEDLLFVAAEPF--TDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~nP~w~e~f~f~v~~~~--~~~L~i~V~D~~~ 563 (1061)
|.|.|++|+||+.. +.++.+||||++.+ +. ...+|++++ ++.||.|||.|.|.+.... ...|.|.|||++.
T Consensus 17 L~V~v~~a~~L~~~-~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~~ 94 (138)
T d1w15a_ 17 LTVVVLKARHLPKS-DVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESLEEISVEFLVLDSER 94 (138)
T ss_dssp EEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCT
T ss_pred EEEEEEEEECCCCC-CCCCCCCEEEEEEEECCCCCCCCCCCEEEC-CCCCCEECCEEEEEECHHHHCCCEEEEEEEECCC
T ss_conf 99999996889998-889985789999995774267643553188-9999737747999823799275589999986799
Q ss_pred -CCCCEEEEEEEECCC
Q ss_conf -998153999980643
Q 001521 564 -KGSVALGVTRVPLTA 578 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~ 578 (1061)
+++++||.+.|++..
T Consensus 95 ~~~~~~iG~~~i~l~~ 110 (138)
T d1w15a_ 95 GSRNEVIGRLVLGATA 110 (138)
T ss_dssp TSCCEEEEEEEESTTC
T ss_pred CCCCCEEEEEEECCHH
T ss_conf 8889788999986600
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=2.5e-16 Score=113.02 Aligned_cols=113 Identities=12% Similarity=0.281 Sum_probs=83.5
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEECC-----EEEEEECCCCCCCCEEECEEEEEECCCCCCCCCEEEEEE
Q ss_conf 999837999999832799999999999499999979-----377765058999982401259962599998788499999
Q 001521 1 MAAIQKLIVEVVDARNLLPKDGHGTSSPYVVIDYYG-----QRRKTHTAVRDLNPTWNEALEFNVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 1 ~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~-----~~~~T~~~~~~lnP~W~e~~~~~v~~~~~~~~~~L~i~v 75 (1061)
|++...+.|.++++..++. ..|.+||||+|.+++ ..++|+++++|+||+|||+|.|.+.+ .+.|.|.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-----~~~l~i~V 73 (123)
T d1bdya_ 1 MAPFLRISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVL 73 (123)
T ss_dssp CCEEEEEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-----TCEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCC--CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC-----CCEEEEEE
T ss_conf 9976999999740566889--9988897799997686653344389986797886346699999744-----66799999
Q ss_pred EECCCCCCCCCCCEEEEEEEECCCCEEC----CCEEEEEEECCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 6579899998886209999978533010----8203599956225788714469999999993
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKK----GEEALIYYPLEKKSLLSWIQGEVGLKIYYVD 134 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 134 (1061)
||+| ++++|.+.+++.++... +...+.|++|.+ .|+|++++.|+.
T Consensus 74 ~d~d-------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 74 MRAA-------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL 122 (123)
T ss_dssp EEET-------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EECC-------CCCCCCCEEEHHHEEECCCCCCCCCCEEEECCC-------CEEEEEEEEEEC
T ss_conf 9864-------353675177566624011368986337970888-------889999999963
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1.1e-16 Score=115.10 Aligned_cols=87 Identities=25% Similarity=0.250 Sum_probs=41.5
Q ss_pred EEEEEEEEECCCCCCCCCCCCCEEEEEEECC-----EEEEEEEEECCCCCCCCCCEEEEEECCC--CCCEEEEEEEECCC
Q ss_conf 9999999618999844689997299999998-----1335654454899971023369732068--88818999996249
Q 001521 491 LRATVIEAQDILPPVAALKEASFTIKAQLGF-----QVQKTKVSVTRNGTPSWNEDLLFVAAEP--FTDQLSFTLENRQH 563 (1061)
Q Consensus 491 L~V~V~~a~~L~~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~nP~w~e~f~f~v~~~--~~~~L~i~V~D~~~ 563 (1061)
|.|+|++|+||+.. +.++.+||||++.+.. .+.+|+++. ++.||.|||.|.|.+... ....|.|.|+|++.
T Consensus 22 L~V~V~~a~nL~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~ 99 (145)
T d1dqva2 22 LTVTIIKASNLKAM-DLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDC 99 (145)
T ss_dssp EEEEEEEEESCCCC-SSSSCCCEEEEECCCTTCCTTSCEECCCCC-SCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCS
T ss_pred EEEEEEEEECCCCC-CCCCCCCCEEEEEECCCCCCCEEECCEEEE-CCCCCEECCEEEEEEEHHHCCCCEEEEEEEECCC
T ss_conf 99999998679873-789995840999990677663560678994-8877403306999984113687789999975699
Q ss_pred -CCCCEEEEEEEECCCC
Q ss_conf -9981539999806431
Q 001521 564 -KGSVALGVTRVPLTAV 579 (1061)
Q Consensus 564 -~~d~~lG~~~i~l~~l 579 (1061)
+++++||.+.|++..+
T Consensus 100 ~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 100 IGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp SSCCEEEEECCCSSCTT
T ss_pred CCCCCEEEEEEECCHHC
T ss_conf 98896799999881671
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=4.7e-17 Score=117.45 Aligned_cols=102 Identities=24% Similarity=0.266 Sum_probs=61.2
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCE-----EEEECCCCCCCCCCCCCEEEEEEEC---CCCEEEEEEE
Q ss_conf 5499999993218998744699998882999995995-----8872013799998126199999754---8949999999
Q 001521 644 VGTVELGVIGCKNLLPMKTVNGKSTTDAYVVAKYASK-----WIRTRTVSDSLEPRWNEQYTWKVYD---PCTVLALGVF 715 (1061)
Q Consensus 644 ~g~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~~~~-----~~rT~~~~~~~~P~wne~~~~~v~~---~~~~l~i~V~ 715 (1061)
.|.|.|.|++|+||++. +..|.+||||.+.+.+. ..+|++++++.||.|||.|.|.+.. ....|.|.||
T Consensus 19 ~~~L~V~V~~a~nL~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~ 95 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVV 95 (145)
T ss_dssp TTEEEEEEEEEESCCCC---SSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEE
T ss_pred CCEEEEEEEEEECCCCC---CCCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCEECCEEEEEEEHHHCCCCEEEEEEE
T ss_conf 99999999998679873---789995840999990677663560678994887740330699998411368778999997
Q ss_pred ECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECE
Q ss_conf 599887888898879999961089999855125894775579402
Q 001521 716 DSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLL 760 (1061)
Q Consensus 716 d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 760 (1061)
|++..+ +|++||++.|++..+.... ..+|++|.
T Consensus 96 d~~~~~-----------~~~~iG~~~i~l~~~~~~~-~~~W~~l~ 128 (145)
T d1dqva2 96 DYDCIG-----------HNEVIGVCRVGPEAADPHG-REHWAEML 128 (145)
T ss_dssp ECCSSS-----------CCEEEEECCCSSCTTCHHH-HHHHHTSS
T ss_pred ECCCCC-----------CCCEEEEEEECCHHCCCHH-HHHHHHHH
T ss_conf 569998-----------8967999998816719535-67799998
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=1.1e-14 Score=102.86 Aligned_cols=93 Identities=11% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCCCCEEEEEECCE-----EEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99998882999995995-----8872013799998126199999754894999999959988788889887999996108
Q 001521 664 NGKSTTDAYVVAKYASK-----WIRTRTVSDSLEPRWNEQYTWKVYDPCTVLALGVFDSWGIFEGENGSMETTRPDCRIG 738 (1061)
Q Consensus 664 d~~g~~dpyv~~~~~~~-----~~rT~~~~~~~~P~wne~~~~~v~~~~~~l~i~V~d~~~~~~~~~~~~~~~~~d~~lG 738 (1061)
...|.+||||.+++++. ..+|.++++|+||+|||.|.|.+.+ ...|.|.|||+| |+++|
T Consensus 19 ~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d---------------d~~~g 82 (123)
T d1bdya_ 19 AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA---------------EDPMS 82 (123)
T ss_dssp CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET---------------TEEEE
T ss_pred CCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCEEEEEEECC-CCEEEEEEEECC---------------CCCCC
T ss_conf 99988897799997686653344389986797886346699999744-667999999864---------------35367
Q ss_pred EEEEECCCCC-----CCCEEEEEEECEECCCCCCCCCCEEEEEEEEE
Q ss_conf 9999855125-----89477557940214899984234999999999
Q 001521 739 KVRIRISTLE-----TGKVYRNTYPLLLLGSNGMTKMGEIEVAVRFI 780 (1061)
Q Consensus 739 ~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 780 (1061)
.+.|+++.|. .+...+.|++|. +.|+|++.++|-
T Consensus 83 ~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~f 121 (123)
T d1bdya_ 83 EVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYF 121 (123)
T ss_dssp EEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred CCEEEHHHEEECCCCCCCCCCEEEECC--------CCEEEEEEEEEE
T ss_conf 517756662401136898633797088--------888999999996
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=5.5e-13 Score=92.51 Aligned_cols=109 Identities=18% Similarity=0.366 Sum_probs=52.5
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCEEEEEECC------EEEEEEC--CCCCCCCEEECE-EEE-EECCCCCCCCCEEEEEE
Q ss_conf 7999999832799999999999499999979------3777650--589999824012-599-62599998788499999
Q 001521 6 KLIVEVVDARNLLPKDGHGTSSPYVVIDYYG------QRRKTHT--AVRDLNPTWNEA-LEF-NVGKPPQVFTDMFELNI 75 (1061)
Q Consensus 6 ~L~v~v~~a~~L~~~d~~g~~dPyv~v~~~~------~~~~T~~--~~~~lnP~W~e~-~~~-~v~~~~~~~~~~L~i~v 75 (1061)
.|.|+|++|++|+.+ +.||||+|.+-| .+++|++ ..+++||.|||. |.| .+..++ -..|.|.|
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~---l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCEEEEEE
T ss_pred EEEEEEEEEECCCCC----CCCCEEEEEEECCCCCCCCCEEEEEEEECCEECCEECCCEEEEEECCCCC---CCEEEEEE
T ss_conf 799999981179999----99968999998767877752797887748736415806586988617774---16999999
Q ss_pred EECCCCCCCCCCCEEEEEEEECCCCEECCCEEEEEEECCCCCCCCEEEEEEEEEEEE
Q ss_conf 657989999888620999997853301082035999562257887144699999999
Q 001521 76 FHDKAYGPTTRNNFLGRIRLSSSQFVKKGEEALIYYPLEKKSLLSWIQGEVGLKIYY 132 (1061)
Q Consensus 76 ~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 132 (1061)
||++ |+|||++.++++.+. .++++.+|.......-..+.|.+.+.+
T Consensus 75 ~D~d-------~~~lG~~~ipl~~l~----~GyR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 75 MEEG-------NKFLGHRIIPINALN----SGYHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp EETT-------TEEEEEEEEEGGGBC----CEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred ECCC-------CCEEEEEEEECCCCC----CCCEEEECCCCCCCCCCCCEEEEEEEE
T ss_conf 9999-------999999998932176----776699915999299988669999999
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.6e-12 Score=89.67 Aligned_cols=93 Identities=24% Similarity=0.392 Sum_probs=54.6
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCEEEEEE-C-----CEEEEECCC--CCCCCCCCCCE-EEE-EEECCC-CEEEEEE
Q ss_conf 99999993218998744699998882999995-9-----958872013--79999812619-999-975489-4999999
Q 001521 646 TVELGVIGCKNLLPMKTVNGKSTTDAYVVAKY-A-----SKWIRTRTV--SDSLEPRWNEQ-YTW-KVYDPC-TVLALGV 714 (1061)
Q Consensus 646 ~L~v~v~~a~~L~~~~~~d~~g~~dpyv~~~~-~-----~~~~rT~~~--~~~~~P~wne~-~~~-~v~~~~-~~l~i~V 714 (1061)
.|.|+|++|++|+.. ++||||.+.+ | ....+|+++ .+++||.|||. |.+ .+..+. ..|.+.|
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred EEEEEEEEEECCCCC-------CCCCEEEEEEECCCCCCCCCEEEEEEEECCEECCEECCCEEEEEECCCCCCCEEEEEE
T ss_conf 799999981179999-------9996899999876787775279788774873641580658698861777416999999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEECEECC
Q ss_conf 9599887888898879999961089999855125894775579402148
Q 001521 715 FDSWGIFEGENGSMETTRPDCRIGKVRIRISTLETGKVYRNTYPLLLLG 763 (1061)
Q Consensus 715 ~d~~~~~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 763 (1061)
||++ |++||++.||++.+..|. ++.||....
T Consensus 75 ~D~d---------------~~~lG~~~ipl~~l~~Gy---R~vpL~~~~ 105 (122)
T d2zkmx2 75 MEEG---------------NKFLGHRIIPINALNSGY---HHLCLHSES 105 (122)
T ss_dssp EETT---------------TEEEEEEEEEGGGBCCEE---EEEEEECTT
T ss_pred ECCC---------------CCEEEEEEEECCCCCCCC---EEEECCCCC
T ss_conf 9999---------------999999998932176776---699915999
|