Citrus Sinensis ID: 001526

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060
MYLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEATRRKGTAFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKAWLVGL
ccccccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHcccccEEEEcHHHHHHcHHHHHcccccccccccccccccEEEEccccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccEEEEEEEcccHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEcccccccccHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccHHHHHHccHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHccc
cccccccccEEEEEEEcccccEccccccccccccccccccccEEEEcccHEHEEEcccccccccccccccccccccccccccccccccccHHHccccHcHHEccccccccccccccccccccccccccccccccHcccHHHHHHcccccEEEcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEHHcHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHccHHHHccccccEEEccccccccccHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHcccccEEEEEHHHHHHcHHHHccccccccHHHHHcccEEEEEEEcHHHcccccHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHcHHHcccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHcccccEEEEEEEEccccccEEcccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEEEcccHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccHHHcccccHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHcccccccccccccccccHHHHcccHHHHHHHHHHHHHHcc
mylddkkpvkVEAEVrtndcsvlsrdhdhvesrsvideekpqkvkiegrrrlckvssrdvdntenravvddepnfsditdfdsplqsktVSAMVNIESraviddgpkfsditvfdsppkaktvsendnykggnEIRDILNDLSARLEILsidkrrvpktvdpeddfsrlvkngdtgqgskgnlpeyasaessfsltsdlsdsssgvtkdnvgGVVESVADEyeeskgddvadeeqetenvgiglkrneprwvdnNLVSARESfesnldgeedggslsevegdehlsRVHETKKhhqrqkknepkrvhdgerfngqsfvsggreeyddeddcvivsgklvvnrpdrrdgklnksaHSGLVNvlddysddsvledegsitlsgprstymlpgkignmlfphqrEGLRWLWSLHcqgkggilgddmglgkTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVrnnskslrgssfisdeagdddaiwdymildeghliknpstqRAKSLleipsahriiisgtPIQNNLKELWALFNfccpellgdnkwfkekyelpilrgndkhaLDREKRIGSAVAKELRERIQPYFLRRLknevfheddvtssatlskkNEMIVWLRLTSCQRQLYEAFLNSEivlsafdgsplAALTILKKIcdhpllltKRAAEDVLdgmdsmlnPEDAALAEKLAMHIADvaekddfqeqhdniscKISFILSLLDklipeghnvLIFSQTRKMLNLIQESIgskgykflridgttkasdRVKIvndfqegdvapiFLLTsqvgglgltltkadrvivvdpawnpstdnqsvdrayrigqKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELlslpkqgfdvslTQQQLheehgdqhnmDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEAtrrkgtafvgnssSSYLVArnvdgaeyafnprdiklnkkssspkneakLKESDIKERIKRLSQLISNKAWLVGL
mylddkkpvkveaevrtndcsvlsrdhdhvesrsvideekpqkvkiegrrrlckvssrdvdntenravvddepnfsditdfdsplqSKTVSAMVNIESraviddgpkfsditvfdsppkaktvsendnykggneIRDILNDLSARLEilsidkrrvpktvdpeddfsrlvkngdtgqgskgnlpeYASAESSFSLTsdlsdsssgvtkdnvggVVESVADEYeeskgddvadeeqetenvgiglkrneprwvDNNLVSARESfesnldgeedggsLSEVEGDEHLSrvhetkkhhqrqkknepkrvhdgerfngqsfvsggreeyddeddcvivsgklvvnrpdrrdgklnksahsglvnvlddysddsVLEDEgsitlsgprstYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVrnnskslrgssfisdeagdDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIlrgndkhaldrEKRIGSAVAKELRERIQPYflrrlknevfheddvtssatlskknemIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESigskgykflrIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVdpawnpstdnqsvdrayrigqkkdvVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEeeatrrkgtafvgnssssyLVARNVDGAeyafnprdiklnkkssspkneaklkesdikeRIKRLsqlisnkawlvgl
MYLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYasaessfsltsdlsdsssGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKtarvqvvqeeeeatrrKGTAFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIKERIKRLSQLISNKAWLVGL
***********************************************************************************************I***AVI********ITV*********************IRDILNDLSARLEILSI**********************************************************************************************************************************************************************************DCVIVSGKLVV*****************LVNVLDD*******************STYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNS*******FISDEAGDDDAIWDYMILDEGHLIKNPS**RAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGM*********ALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL****************************EAHIQFLDTLGIAGVSHHSLLFSKTARVQV****************************************************************************W****
********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGT************LQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPIL***************SAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFL**************AALTILKKICDHPLLLTKRAAEDVLDGM*********ALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFK******************ELLSLPKQ******************************FLDTLGIAGVSHHSLLF**********************************************************************************KAWLVGL
MYLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYA*********************DNVGGVVESVADE******************VGIGLKRNEPRWVDNNLVSARES*******************************************VHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARV***************AFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKK*************DIKERIKRLSQLISNKAWLVGL
*****KKPVKVEAEVRTNDCSVL***************EKPQKVKIEGRRRLCKVSS**************EPNFSDITDFDSPLQ**********************SDITVFDSPPKA**************IRDILNDLSARLEILSIDKR***********************************************************************************************************************************SRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDC***************************************LEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILR******LDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFD*******LHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEATRRKGTAFVGNSSSSYLVARNVDGAEYAFNPRDIKL**********AKLKESDIKERIKRLSQLISNKAWLVGL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYLDDKKPVKVEAEVRTNDCSVLSRDHDHVESRSVIDEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMVNIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSIDKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYASAESSFSLTSDLSDSSSGVTKDNVGGVVESVADEYEESKGDDVADEEQETENVGIGLKRNEPRWVDNNLVSARESFESNLDGEEDGGSLSEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGREEYDDEDDCVIVSGKLVVNRPDRRDGKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEATRRKGTAFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPxxxxxxxxxxxxxxxxxxxxxISNKAWLVGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1060 2.2.26 [Sep-21-2011]
Q2NKX8 1250 DNA excision repair prote yes no 0.527 0.447 0.424 1e-135
Q8BHK9 1240 DNA excision repair prote yes no 0.561 0.479 0.413 1e-134
A6QQR4 1242 DNA excision repair prote yes no 0.540 0.461 0.415 1e-134
A2BGR3 1451 DNA excision repair prote yes no 0.530 0.387 0.418 1e-133
Q03468 1493 DNA excision repair prote no no 0.481 0.341 0.375 1e-102
Q9UR24973 DNA repair protein rhp26 yes no 0.468 0.510 0.382 2e-97
P40352 1085 DNA repair and recombinat yes no 0.480 0.469 0.340 1e-85
O149811849 TATA-binding protein-asso no no 0.470 0.269 0.332 2e-71
P323331867 TATA-binding protein-asso no no 0.474 0.269 0.323 1e-70
Q9DG67918 DNA repair and recombinat no no 0.472 0.545 0.332 2e-68
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1 Back     alignment and function desciption
 Score =  483 bits (1242), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 266/626 (42%), Positives = 382/626 (61%), Gaps = 67/626 (10%)

Query: 384 STYMLPGKIGNMLFPHQREGLRWLWSLHCQG-KGGILGDDMGLGKTMQICGFLAGLFHSR 442
           S  +L  ++ N LF HQ+EG+ +L+SL+  G KGGIL DDMGLGKT+QI  FL+G+F + 
Sbjct: 84  SGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDAS 143

Query: 443 LIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYD 502
           L+   L++ P  L++ W+KE        +++ + G     R   L  + Q  GV++TTY 
Sbjct: 144 LVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQ 203

Query: 503 IVRNNSK---SLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRI 559
           ++ NN +   S RG  F+          WDY+ILDE H IK  ST+ A     IP+++R+
Sbjct: 204 MLINNWQQLSSFRGQEFV----------WDYVILDEAHKIKTSSTKSAICARAIPASNRL 253

Query: 560 IISGTPIQNNLKELWALFNFCCP-ELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
           +++GTPIQNNL+ELW+LF+F C   LLG  K FK +YE PI R  +K A   EK +G  +
Sbjct: 254 LLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKI 313

Query: 619 AKELRERIQPYFLRRLKNEVFHE----------------DDVTSSATLSKKNEMIVWLRL 662
           ++ L   I+PYFLRR K +V  +                D +    +LS+KN++I+W+RL
Sbjct: 314 SENLMAIIKPYFLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRL 373

Query: 663 TSCQRQLYEAFLN----SEIVLSAFDGSPLAALTILKKICDHPLLLTKRA---------- 708
              Q ++Y  F++     E+++     SPLA L +LKK+CDHP LL+ RA          
Sbjct: 374 VPLQEEIYRKFVSLDHIKELLMET--RSPLAELGVLKKLCDHPRLLSARACCLLNLGTFS 431

Query: 709 AEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE 768
           A+D  +G DS   P+          HI  V +    +E     S K+ F++ LL +L  E
Sbjct: 432 AQDGNEGEDS---PD--------VDHIDQVTDDTLMEE-----SGKMIFLMDLLKRLRDE 475

Query: 769 GHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGT-TKASDRVKIVNDFQEGDVAPIFLLT 827
           GH  L+FSQ+R++LN+I+  + ++ +K LRIDGT T   +R K +N FQ+     +FLLT
Sbjct: 476 GHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLT 535

Query: 828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
           +QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIY
Sbjct: 536 TQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIY 595

Query: 888 RKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMD 946
           R+Q+FK  L +  T E K   RYFS+Q+LREL ++  +    S+TQ QL   H  Q   D
Sbjct: 596 RRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSD 653

Query: 947 ESLEAHIQFLDTLGIAGVSHHSLLFS 972
             L+ HI +L +LGIAG+S H L+++
Sbjct: 654 IKLDEHIAYLQSLGIAGISDHDLMYT 679
DNA helicase that acts as an essential component of the spindle assembly checkpoint. Contributes to the mitotic checkpoint by recruiting MAD2 to kinetochores and monitoring tension on centromeric chromatin. Acts as a tension sensor that associates with catenated DNA which is stretched under tension until it is resolved during anaphase.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1 Back     alignment and function description
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1 Back     alignment and function description
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1 Back     alignment and function description
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1 Back     alignment and function description
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rhp26 PE=4 SV=1 Back     alignment and function description
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1 SV=1 Back     alignment and function description
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2 Back     alignment and function description
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus GN=RAD54B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1060
2555505461109 ATP binding protein, putative [Ricinus c 0.945 0.903 0.682 0.0
2240935011108 chromatin remodeling complex subunit [Po 0.920 0.880 0.661 0.0
2240810141058 chromatin remodeling complex subunit [Po 0.894 0.896 0.666 0.0
2254316831043 PREDICTED: DNA excision repair protein E 0.874 0.888 0.651 0.0
2977973991097 hypothetical protein ARALYDRAFT_496587 [ 0.926 0.895 0.594 0.0
3565275201030 PREDICTED: DNA excision repair protein E 0.643 0.662 0.774 0.0
4494513031016 PREDICTED: DNA excision repair protein E 0.876 0.914 0.577 0.0
356511188938 PREDICTED: DNA excision repair protein E 0.639 0.722 0.760 0.0
223280391090 protein chromatin remodeling 24 [Arabido 0.674 0.655 0.718 0.0
3575200331129 DNA excision repair protein ERCC-6-like 0.657 0.617 0.730 0.0
>gi|255550546|ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis] gi|223544553|gb|EEF46070.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1306 bits (3381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 706/1034 (68%), Positives = 807/1034 (78%), Gaps = 32/1034 (3%)

Query: 37   DEEKPQKVKIEGRRRLCKVSSRDVDNTENRAVVDDEPNFSDITDFDSPLQSKTVSAMV-- 94
            +E KP K+K+EG RRLCK S+ D D+        + P F  +TDFDS    + +  +   
Sbjct: 41   EEGKPSKIKLEGLRRLCKASAVDDDH--------NIPRFFGVTDFDSSSGRRRLCKLSSR 92

Query: 95   ---NIESRAVIDDGPKFSDITVFDSPPKAKTVSENDNYKGGNEIRDILNDLSARLEILSI 151
               N  S   +D+ P F+DIT FDSP  +K ++   + K  NEI DIL+DLS+RL++LSI
Sbjct: 93   DKENAGSVTAVDE-PSFADITDFDSPLPSKAMAGGKSNKDANEIMDILDDLSSRLDLLSI 151

Query: 152  DKRRVPKTVDPEDDFSRLVKNGDTGQGSKGNLPEYASAESSFSLTSDLSDSSSGVTKDNV 211
            +K+R    VD   D    +  G  G+  K +LPEYASA  S       S  SS V  +++
Sbjct: 152  EKKR---GVDKAPDGPSELLPGRDGE-KKTDLPEYASA-GSSFSDIYDSSDSSSVLSNSI 206

Query: 212  GGVVESVADEYEES------KGDDVADEEQETENVGIGLK-RNEPRWVDNNLVSARESFE 264
             G  ES  D+Y+ES      + D  AD   E      GL   N+ R VD+ LV+   SF 
Sbjct: 207  DGGPESFVDKYDESQFLSKSRCDHFADNVHENNKNSRGLNMENKYRGVDDKLVAVGNSFV 266

Query: 265  SNLDGEEDGGSL-SEVEGDEHLSRVHETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE 323
            SN++ EED  +L SE E +  ++R  ET K   R K N+ KRVH+  R  G+S VS  R 
Sbjct: 267  SNIEEEEDETNLRSESECESRVTRERETNKGTHRLKDNDSKRVHERSRVAGRSSVSILRN 326

Query: 324  EYDDEDD-CVIVSGKLVVNRPDRRDGKLNKSAH-SGLVNVLDDYSDDSVLEDEGSITLSG 381
            E DD+++ C+++S K VV    +  GK  +  + S  +++LDD +DDSVL+D GSITLSG
Sbjct: 327  EEDDDEEDCLVLSRKKVVEEAGKLGGKNKEPCNLSSPIDLLDDDTDDSVLDDGGSITLSG 386

Query: 382  PRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS 441
            PRST+ LP KI  ML+PHQR+GL+WLWSLHC GKGGILGDDMGLGKTMQICGFLAGLFHS
Sbjct: 387  PRSTFELPSKIATMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHS 446

Query: 442  RLIKRALVVAPKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTY 501
            RLIKRALVVAPKTLL+HWIKEL AVGLS K REYFGT +K RQYELQY+LQDKG+LLTTY
Sbjct: 447  RLIKRALVVAPKTLLAHWIKELAAVGLSRKTREYFGTSLKARQYELQYILQDKGILLTTY 506

Query: 502  DIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 561
            DIVRNNSKSLRG  + +DE  +D   WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII
Sbjct: 507  DIVRNNSKSLRGDDYFADEESEDGYTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIII 566

Query: 562  SGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAVAKE 621
            SGTPIQNNLKELW LFNF CP LLGD   FK+KYE PILRGN+K+A  REK +GS +AKE
Sbjct: 567  SGTPIQNNLKELWTLFNFSCPNLLGDYNGFKKKYEHPILRGNEKNASAREKHVGSTIAKE 626

Query: 622  LRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLS 681
            LRERIQPYFLRRLKNEVF EDD+T +ATLSKKNEMIVWLRLTSCQR+LY AFL SE+VLS
Sbjct: 627  LRERIQPYFLRRLKNEVFKEDDLT-TATLSKKNEMIVWLRLTSCQRELYRAFLQSELVLS 685

Query: 682  AFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEK 741
            AFDGSPLAALTILKKICDHPLLLTKRAAEDVL+GMD  ++PEDA LAEKLA+H+ADVAEK
Sbjct: 686  AFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMD-FISPEDAGLAEKLALHVADVAEK 744

Query: 742  DDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG 801
             +FQE+HDNISCKISFI+SLLD LIPEGHNVLIFSQ+RKMLNLIQ+S+ S GY+FLRIDG
Sbjct: 745  AEFQEKHDNISCKISFIMSLLDNLIPEGHNVLIFSQSRKMLNLIQDSLASNGYEFLRIDG 804

Query: 802  TTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 861
            TTKASDRVKIVNDFQEG  APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR
Sbjct: 805  TTKASDRVKIVNDFQEGVGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDR 864

Query: 862  AYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 921
            AYRIGQ+KDV+VYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLREL SL
Sbjct: 865  AYRIGQRKDVLVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELFSL 924

Query: 922  PKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQ 981
            PKQGFD+SLTQQQLHEEH  QH MDESLE H+ FL+ LGIAGVSHHSLLFSKTA VQVV 
Sbjct: 925  PKQGFDISLTQQQLHEEHDHQHKMDESLETHVNFLERLGIAGVSHHSLLFSKTAPVQVVN 984

Query: 982  EEEEATRRKGTAFVGNSSSSYLVARNVDGAEYAFNPRDIKLNKKSSSPKNEAKLKESDIK 1041
             EEE  R K TAFVGNSS +  V RNVDGA YA NP+D+KLNKKS SP+N  KL ES+IK
Sbjct: 985  IEEEEMRDKVTAFVGNSSRT-TVERNVDGAVYALNPKDVKLNKKSCSPENVGKLTESEIK 1043

Query: 1042 ERIKRLSQLISNKA 1055
            ERI RLSQL+ N A
Sbjct: 1044 ERISRLSQLLGNMA 1057

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224093501|ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222852831|gb|EEE90378.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224081014|ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222855713|gb|EEE93260.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225431683|ref|XP_002264260.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera] gi|296088517|emb|CBI37508.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297797399|ref|XP_002866584.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata] gi|297312419|gb|EFH42843.1| hypothetical protein ARALYDRAFT_496587 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356527520|ref|XP_003532357.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max] Back     alignment and taxonomy information
>gi|449451303|ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511188|ref|XP_003524311.1| PREDICTED: DNA excision repair protein ERCC-6-like [Glycine max] Back     alignment and taxonomy information
>gi|22328039|ref|NP_201200.2| protein chromatin remodeling 24 [Arabidopsis thaliana] gi|18087573|gb|AAL58917.1|AF462829_1 AT5g63950/MBM17_5 [Arabidopsis thaliana] gi|22655364|gb|AAM98274.1| At5g63950/MBM17_5 [Arabidopsis thaliana] gi|332010436|gb|AED97819.1| protein chromatin remodeling 24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357520033|ref|XP_003630305.1| DNA excision repair protein ERCC-6-like protein [Medicago truncatula] gi|355524327|gb|AET04781.1| DNA excision repair protein ERCC-6-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1060
TAIR|locus:21608111090 CHR24 "chromatin remodeling 24 0.712 0.692 0.686 3.5e-288
UNIPROTKB|Q2NKX8 1250 ERCC6L "DNA excision repair pr 0.541 0.459 0.433 1.9e-122
UNIPROTKB|I3LFY4 1225 ERCC6L "Uncharacterized protei 0.543 0.470 0.425 1.1e-121
UNIPROTKB|J9P3F5 1268 ERCC6L "Uncharacterized protei 0.543 0.454 0.427 1.3e-121
RGD|1565734 1230 Ercc6l "excision repair cross- 0.556 0.479 0.421 1.3e-121
MGI|MGI:2654144 1240 Ercc6l "excision repair cross- 0.542 0.463 0.431 2.8e-121
UNIPROTKB|A6QQR4 1242 ERCC6L "DNA excision repair pr 0.542 0.462 0.423 1.2e-120
UNIPROTKB|B5MDQ0 1127 ERCC6L "FLJ20105 protein, isof 0.504 0.474 0.429 1.4e-112
ZFIN|ZDB-GENE-060531-56 1451 ercc6l "excision repair cross- 0.558 0.407 0.388 2.7e-111
DICTYBASE|DDB_G0288873 1332 pich "polo-interacting checkpo 0.287 0.228 0.449 3e-111
TAIR|locus:2160811 CHR24 "chromatin remodeling 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2643 (935.4 bits), Expect = 3.5e-288, Sum P(2) = 3.5e-288
 Identities = 528/769 (68%), Positives = 610/769 (79%)

Query:   290 ETKKHHQRQKKNEPKRVHDGERFNGQSFVSGGRE--EYDDEDDCVIVSGKLVVNRPDRRD 347
             + K+  Q  K      V +  R  G+S  +  R+  E DD+DDC+I+SGK          
Sbjct:   277 QCKEVDQSMKTTRHIEVSEKIRTVGRSNAAKLRDLDEDDDDDDCLILSGKKAAEM----- 331

Query:   348 GKLNKSAHSGLVNVLDDYSDDSVLEDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWL 407
              K+NK A S   N      D+  LEDEGSITL+G   +Y LPGKI  ML+PHQREGL WL
Sbjct:   332 -KINKPARS--YNAKRHGYDERSLEDEGSITLTGLNLSYTLPGKIATMLYPHQREGLNWL 388

Query:   408 WSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIKRALVVAPKTLLSHWIKELTAVG 467
             WSLH QGKGGILGDDMGLGKTMQIC FLAGLFHS+LIKRALVVAPKTLL HW+KEL  VG
Sbjct:   389 WSLHTQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVG 448

Query:   468 LSAKIREYFGTCVKTRQYELQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISDEAGDDDAI 527
             LS   REY+GT  K R+Y+L ++LQ KG+LLTTYDIVRNN+K+L+G    +DE  +D   
Sbjct:   449 LSQMTREYYGTSTKAREYDLHHILQGKGILLTTYDIVRNNTKALQGDDHYTDEDDEDGNK 508

Query:   528 WDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGD 587
             WDYMILDEGHLIKNP+TQRAKSLLEIPS+HRIIISGTPIQNNLKELWALFNF CP LLGD
Sbjct:   509 WDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGD 568

Query:   588 NKWFKEKYELPILRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSS 647
               WFK+ YE  ILRG DK+A DRE+RIGS VAK LRE IQP+FLRRLK+EVF +D  TS 
Sbjct:   569 KNWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSK 628

Query:   648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 707
               LSKK+E++VWLRLT+CQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR
Sbjct:   629 --LSKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGSPLAALTILKKICDHPLLLTKR 686

Query:   708 AAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIP 767
             AAEDVL+GMDS L  E+A +AE+LAMHIAD  + DDFQ ++D+ISCK+SFI+SLL+ LIP
Sbjct:   687 AAEDVLEGMDSTLTQEEAGVAERLAMHIADNVDTDDFQTKNDSISCKLSFIMSLLENLIP 746

Query:   768 EGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLT 827
             EGH VLIFSQTRKMLNLIQ+S+ S GY FLRIDGTTKA DR+K V +FQEG VAPIFLLT
Sbjct:   747 EGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLT 806

Query:   828 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIY 887
             SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ KDV+VYRLMT  TVEEKIY
Sbjct:   807 SQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIY 866

Query:   888 RKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDE 947
             RKQ++KGGLFKTATEHKEQIRYFSQQDLREL SLPK GFDVS TQQQL+EEH +Q  +DE
Sbjct:   867 RKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKGGFDVSPTQQQLYEEHYNQIKLDE 926

Query:   948 SLEAHIQFLDTLGIAGVSHHSLLFSKXXXXXXXXXXXXXXXXKGTAFV-GNSSSSYLVAR 1006
              LE+H++FL+TLGIAGVSHHSLLFSK                + TA + G +S+S     
Sbjct:   927 KLESHVKFLETLGIAGVSHHSLLFSKTAPIQAIQKDEEEQIRRETALLLGRASASISQDT 986

Query:  1007 NVDGAEYAFNPRDIKLNKKSS-SPKNEAKLKESDIKERIKRLSQLISNK 1054
              ++GA+YAF P+D+ L+K+ + SP ++ +L ES IK R+ RL+ L+ NK
Sbjct:   987 VINGADYAFKPKDVNLDKRINISPVDDKELSESVIKARLNRLTMLLQNK 1035
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0006270 "DNA replication initiation" evidence=RCA
GO:0006275 "regulation of DNA replication" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
GO:0051726 "regulation of cell cycle" evidence=RCA
UNIPROTKB|Q2NKX8 ERCC6L "DNA excision repair protein ERCC-6-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFY4 ERCC6L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3F5 ERCC6L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1565734 Ercc6l "excision repair cross-complementing rodent repair deficiency complementation group 6 - like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2654144 Ercc6l "excision repair cross-complementing rodent repair deficiency complementation group 6 like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQR4 ERCC6L "DNA excision repair protein ERCC-6-like" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B5MDQ0 ERCC6L "FLJ20105 protein, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060531-56 ercc6l "excision repair cross-complementing rodent repair deficiency, complementation group 6-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288873 pich "polo-interacting checkpoint helicase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1060
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 5e-82
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 3e-73
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 4e-68
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 7e-24
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 3e-22
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 4e-19
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-18
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-16
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 7e-07
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 2e-04
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 8e-04
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  285 bits (730), Expect = 5e-82
 Identities = 183/565 (32%), Positives = 276/565 (48%), Gaps = 58/565 (10%)

Query: 389 PGKIGNMLFPHQREGLRWLWS-LHCQGKGGILGDDMGLGKTMQICGFLAGLFHS--RLIK 445
           P  +   L P+Q EG+ WL   L     GGIL DDMGLGKT+Q    L  L  S    + 
Sbjct: 332 PVDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLG 391

Query: 446 RALVVAPKTLLSHWIKEL-TAVGLSAKIREYFGTC--VKTRQYELQYVLQDKGVLLTTYD 502
            AL+V P +LLS+W +E          +  Y G    +  ++  L+ +L+   V+   +D
Sbjct: 392 PALIVVPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVI--IFD 449

Query: 503 IVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIIS 562
           +V    + LR            +  WD ++LDE H IKN  +   K+L  + + +R+ ++
Sbjct: 450 VVITTYELLRRFLVDHGGLKKIE--WDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLT 507

Query: 563 GTPIQNNLKELWALFN-FCCPELLGDN-KWFKEKYELPILRGNDKHALDREKRIGSAVAK 620
           GTP++N L ELW+L   F  P LLG +   F   +E PI    D               +
Sbjct: 508 GTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDI----GPLEARELGIE 563

Query: 621 ELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVL 680
            LR+ + P+ LRR K +V    +      L  K E ++   L+  QR+LYEA L      
Sbjct: 564 LLRKLLSPFILRRTKEDVEVLKE------LPPKIEKVLECELSEEQRELYEALLEGAEKN 617

Query: 681 SA-----------------FDGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPE 723
                               + + LA LT L++IC+HP L        V +G+++  +  
Sbjct: 618 QQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPAL--------VDEGLEATFDRI 669

Query: 724 DAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLL-DKLIPEGHN--VLIFSQTRK 780
              L E       D       +        K+  +  LL DKL+ EGH   VLIFSQ   
Sbjct: 670 VLLLRE-------DKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTP 722

Query: 781 MLNLIQESIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKA 840
           +L+L+++ + + G K++R+DG+T A  R ++++ F   +   +FLL+ + GGLGL LT A
Sbjct: 723 VLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGA 782

Query: 841 DRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTA 900
           D VI+ DP WNP+ + Q++DRA+RIGQK+ V VYRL+T GT+EEKI   Q  K  L   +
Sbjct: 783 DTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQEL-LDS 841

Query: 901 TEHKEQIRYFSQQDLRELLSLPKQG 925
               E  +  S+  + +LL L   G
Sbjct: 842 LIDAEGEKELSKLSIEDLLDLFSLG 866

Length = 866
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1060
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
KOG0354746 consensus DEAD-box like helicase [General function 99.97
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.97
KOG1123776 consensus RNA polymerase II transcription initiati 99.97
PTZ00110545 helicase; Provisional 99.96
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.95
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.95
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.95
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.95
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.95
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.95
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.95
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.94
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.94
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.94
PTZ00424401 helicase 45; Provisional 99.94
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.94
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.94
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.93
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.93
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.91
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.91
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.91
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.91
PRK13767 876 ATP-dependent helicase; Provisional 99.9
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.9
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.9
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.9
PRK106891147 transcription-repair coupling factor; Provisional 99.89
PRK02362 737 ski2-like helicase; Provisional 99.88
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.86
PRK01172 674 ski2-like helicase; Provisional 99.86
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.86
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.86
PRK00254720 ski2-like helicase; Provisional 99.85
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.85
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.84
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.83
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.83
COG4096 875 HsdR Type I site-specific restriction-modification 99.83
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.82
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.82
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.81
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 99.81
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.81
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.81
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.81
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.8
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.8
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.79
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.79
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.78
COG1205 851 Distinct helicase family with a unique C-terminal 99.78
PHA02653675 RNA helicase NPH-II; Provisional 99.78
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.78
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.77
PRK09401 1176 reverse gyrase; Reviewed 99.77
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.76
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.75
KOG4284 980 consensus DEAD box protein [Transcription] 99.75
KOG0347731 consensus RNA helicase [RNA processing and modific 99.74
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.73
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.73
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.73
PRK05580679 primosome assembly protein PriA; Validated 99.71
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.71
COG1204 766 Superfamily II helicase [General function predicti 99.71
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.7
KOG0334997 consensus RNA helicase [RNA processing and modific 99.7
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.7
PRK14701 1638 reverse gyrase; Provisional 99.7
COG1202830 Superfamily II helicase, archaea-specific [General 99.7
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.69
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.68
COG4889 1518 Predicted helicase [General function prediction on 99.68
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.68
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.68
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.68
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.68
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.66
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.66
PRK09694878 helicase Cas3; Provisional 99.65
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.64
KOG0346569 consensus RNA helicase [RNA processing and modific 99.63
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.63
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.62
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.62
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.61
smart00487201 DEXDc DEAD-like helicases superfamily. 99.58
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.54
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.53
KOG0327397 consensus Translation initiation factor 4F, helica 99.52
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.51
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.5
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.5
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.5
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.5
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.49
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.44
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.43
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.41
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.4
smart0049082 HELICc helicase superfamily c-terminal domain. 99.39
PRK05298652 excinuclease ABC subunit B; Provisional 99.39
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.37
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.37
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.27
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.25
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.22
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.17
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.13
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.11
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 99.09
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 99.06
CHL00122 870 secA preprotein translocase subunit SecA; Validate 98.97
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.89
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 98.88
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.88
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 98.87
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 98.87
COG0610962 Type I site-specific restriction-modification syst 98.86
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.83
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.82
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.82
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 98.82
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 98.74
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.71
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.65
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.65
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.63
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 98.61
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.61
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.56
KOG0924 1042 consensus mRNA splicing factor ATP-dependent RNA h 98.52
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 98.51
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 98.45
PRK15483 986 type III restriction-modification system StyLTI en 98.39
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.34
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 98.31
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.26
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.11
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.11
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 98.1
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.1
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.03
KOG0923 902 consensus mRNA splicing factor ATP-dependent RNA h 97.99
PF13871278 Helicase_C_4: Helicase_C-like 97.95
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.91
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.8
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.76
PRK10536262 hypothetical protein; Provisional 97.56
KOG0925 699 consensus mRNA splicing factor ATP-dependent RNA h 97.48
COG3587 985 Restriction endonuclease [Defense mechanisms] 97.17
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 97.12
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.04
KOG1803649 consensus DNA helicase [Replication, recombination 97.02
PRK14873665 primosome assembly protein PriA; Provisional 96.88
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.85
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.81
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.66
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.61
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.56
KOG1131755 consensus RNA polymerase II transcription initiati 96.4
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 96.34
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 96.32
TIGR00376637 DNA helicase, putative. The gene product may repre 96.27
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 96.25
COG0553 866 HepA Superfamily II DNA/RNA helicases, SNF2 family 96.17
PRK10875615 recD exonuclease V subunit alpha; Provisional 96.14
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.13
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 96.06
KOG18051100 consensus DNA replication helicase [Replication, r 95.44
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.35
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 94.94
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 94.54
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 94.41
smart00382148 AAA ATPases associated with a variety of cellular 94.39
PRK04296190 thymidine kinase; Provisional 94.27
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 94.24
PLN03025319 replication factor C subunit; Provisional 94.24
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 94.07
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 93.87
smart00492141 HELICc3 helicase superfamily c-terminal domain. 93.79
PHA02533534 17 large terminase protein; Provisional 93.5
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 93.42
KOG0442 892 consensus Structure-specific endonuclease ERCC1-XP 93.29
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 93.26
PRK12402337 replication factor C small subunit 2; Reviewed 93.15
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 92.75
smart00491142 HELICc2 helicase superfamily c-terminal domain. 92.34
PF1324576 AAA_19: Part of AAA domain 92.3
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 92.26
PRK09112351 DNA polymerase III subunit delta'; Validated 92.25
PRK06526254 transposase; Provisional 91.88
PRK07003 830 DNA polymerase III subunits gamma and tau; Validat 91.88
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 91.82
PRK08769319 DNA polymerase III subunit delta'; Validated 91.72
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 91.69
PRK05707328 DNA polymerase III subunit delta'; Validated 91.67
PRK08116268 hypothetical protein; Validated 90.9
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 90.74
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 90.65
PRK08181269 transposase; Validated 90.57
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 90.01
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 89.94
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 89.92
PRK00149450 dnaA chromosomal replication initiation protein; R 89.9
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 89.88
TIGR00362405 DnaA chromosomal replication initiator protein Dna 89.76
PHA03372668 DNA packaging terminase subunit 1; Provisional 89.55
CHL00181287 cbbX CbbX; Provisional 89.38
PRK14974336 cell division protein FtsY; Provisional 89.1
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 89.07
PHA03368738 DNA packaging terminase subunit 1; Provisional 88.98
PRK14087450 dnaA chromosomal replication initiation protein; P 88.8
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 88.8
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 88.14
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 87.9
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 87.8
PRK13889988 conjugal transfer relaxase TraA; Provisional 87.65
TIGR00595 505 priA primosomal protein N'. All proteins in this f 87.55
PRK08084235 DNA replication initiation factor; Provisional 87.47
PRK07993334 DNA polymerase III subunit delta'; Validated 87.32
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 87.28
PRK05580 679 primosome assembly protein PriA; Validated 87.2
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 87.14
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 87.0
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 86.93
COG1484254 DnaC DNA replication protein [DNA replication, rec 86.77
PF13173128 AAA_14: AAA domain 86.51
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 86.42
PRK14088440 dnaA chromosomal replication initiation protein; P 86.36
PRK06871325 DNA polymerase III subunit delta'; Validated 86.3
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 86.24
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 86.1
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 86.05
PHA02544316 44 clamp loader, small subunit; Provisional 85.96
TIGR02928365 orc1/cdc6 family replication initiation protein. M 85.94
PRK06090319 DNA polymerase III subunit delta'; Validated 85.91
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 85.74
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 85.67
PRK08727233 hypothetical protein; Validated 85.51
COG4626546 Phage terminase-like protein, large subunit [Gener 85.33
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 85.24
PRK07764 824 DNA polymerase III subunits gamma and tau; Validat 85.18
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 85.18
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 85.13
PRK07940394 DNA polymerase III subunit delta'; Validated 84.76
COG1198 730 PriA Primosomal protein N' (replication factor Y) 84.64
PRK00440319 rfc replication factor C small subunit; Reviewed 84.43
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 84.39
PRK10416318 signal recognition particle-docking protein FtsY; 83.94
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 83.77
PRK14086617 dnaA chromosomal replication initiation protein; P 83.77
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 83.75
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 83.73
PRK00771437 signal recognition particle protein Srp54; Provisi 83.64
PRK138261102 Dtr system oriT relaxase; Provisional 83.63
COG0552340 FtsY Signal recognition particle GTPase [Intracell 83.34
PRK07471365 DNA polymerase III subunit delta'; Validated 83.32
PRK06964342 DNA polymerase III subunit delta'; Validated 83.22
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 83.02
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 82.84
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 82.14
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 81.96
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 81.71
PRK12422445 chromosomal replication initiation protein; Provis 81.29
PRK08058329 DNA polymerase III subunit delta'; Validated 80.51
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 80.48
cd01124187 KaiC KaiC is a circadian clock protein primarily f 80.45
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 80.42
PRK14873 665 primosome assembly protein PriA; Provisional 80.37
cd00984242 DnaB_C DnaB helicase C terminal domain. The hexame 80.29
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-118  Score=1029.40  Aligned_cols=638  Identities=41%  Similarity=0.656  Sum_probs=570.0

Q ss_pred             ccCCCccccCCCcccccCccccCCCChHHHHHHHHHHHhhcCCCCeEEEcCCCCchHHHHHHHHHHHhhc-cCCCceEEE
Q 001526          372 EDEGSITLSGPRSTYMLPGKIGNMLFPHQREGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHS-RLIKRALVV  450 (1060)
Q Consensus       372 ~~~~~~~l~~~~~~~~lp~~l~~~L~phQ~egV~wl~~~~~~~~GgILaDemGLGKTlqaiali~~l~~~-~~~k~vLIV  450 (1060)
                      .....+........|.+|+.++..|+|||++||+|||++++.+.||||||+||||||+|+|+|++++++. ...+|+|||
T Consensus       182 ~~~~~~~~~~~~~~~~vPg~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIV  261 (923)
T KOG0387|consen  182 EDHSEISGKKLEGGFKVPGFIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIV  261 (923)
T ss_pred             ccccccccccccccccccHHHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEE
Confidence            3444555556666799999999999999999999999999999999999999999999999999999988 677999999


Q ss_pred             eCcccHHHHHHHHHHhcCCCcEEEEcccccchhhHH-----------HHHhhhCCCEEEeeHHHHHhccccccCCCcccC
Q 001526          451 APKTLLSHWIKELTAVGLSAKIREYFGTCVKTRQYE-----------LQYVLQDKGVLLTTYDIVRNNSKSLRGSSFISD  519 (1060)
Q Consensus       451 ~P~sLl~qW~~E~~k~~~~~~v~~~~g~~~~~~~~~-----------~~~~~~~~~VvItTy~~l~~~~~~l~~~~~~~~  519 (1060)
                      ||++++.||++||.+|+|..++.++|+++...+...           .......++|+||||+.++.....+        
T Consensus       262 CP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l--------  333 (923)
T KOG0387|consen  262 CPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDL--------  333 (923)
T ss_pred             ccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCccc--------
Confidence            999999999999999999999999999876422110           1112335679999999998765443        


Q ss_pred             cCCCCCCCccEEEEcCCCcCCCcchHHHHHHHcCCCCceEEeecCCCCCCHHHHHHHHhhhCCCCCCChHHHHHHhhccc
Q 001526          520 EAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPI  599 (1060)
Q Consensus       520 ~~~~~~~~wd~VIlDEAH~iKN~~sk~~kal~~l~a~~RilLTGTPiqN~l~EL~sLl~fl~p~~l~~~~~F~~~f~~pi  599 (1060)
                          ....|+|+|+||+|+|||++|+++.+|+.+++.+||+||||||||++.|||+|++|+.|+.+|+...|.+.|..||
T Consensus       334 ----~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI  409 (923)
T KOG0387|consen  334 ----LGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPI  409 (923)
T ss_pred             ----ccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhhe
Confidence                4677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcchhhHHHHhhHHHHHHHHHHhhHHHHHhhhhcccccCccccccccCccceEEEEecCCHHHHHHHHHHHhhHHH
Q 001526          600 LRGNDKHALDREKRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIV  679 (1060)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~LRR~k~dv~~~~~~~~~~~LP~k~e~vv~~~ls~~Q~~lY~~~l~~~~~  679 (1060)
                      ..|.+.++++.+...+..++..|+.+|+||+|||+|.+|..       ..||.|.++++||.||+.|+++|+.|+++..+
T Consensus       410 ~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~-------~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v  482 (923)
T KOG0387|consen  410 NRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKG-------LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEV  482 (923)
T ss_pred             eccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-------ccCCCccceEEEEeccHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999999999999999954       36999999999999999999999999999999


Q ss_pred             hhhcCCCh--HHHHHHHHHHhcChhhhhhhhhhhhhhhcccCCChHHHHHHHHHHHHHhhhhhhhhhhhhcccccchHHH
Q 001526          680 LSAFDGSP--LAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNPEDAALAEKLAMHIADVAEKDDFQEQHDNISCKISF  757 (1060)
Q Consensus       680 ~~~~~~~~--l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~  757 (1060)
                      ...+++..  +..+..||+|||||.++..... ....+.+                          + +..+..|+|+..
T Consensus       483 ~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~-~~~~~~D--------------------------~-~g~~k~sGKm~v  534 (923)
T KOG0387|consen  483 NKILNGKRNCLSGIDILRKICNHPDLLDRRDE-DEKQGPD--------------------------Y-EGDPKRSGKMKV  534 (923)
T ss_pred             HHHHcCCccceechHHHHhhcCCcccccCccc-ccccCCC--------------------------c-CCChhhcchHHH
Confidence            98888876  8999999999999999876431 0000000                          0 023346999999


Q ss_pred             HHHHHHhhccCCCceEEEeccHHHHHHHHHHHh-hcCCeEEEEECCCCHHHHHHHHHHhhcCCCccEEEEecCCcccccC
Q 001526          758 ILSLLDKLIPEGHNVLIFSQTRKMLNLIQESIG-SKGYKFLRIDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLT  836 (1060)
Q Consensus       758 L~~lL~~~~~~g~KvLIFsq~~~~ld~L~~~L~-~~gi~~~ridG~~s~~eR~~iI~~F~~~~~~~V~LlST~agg~GLN  836 (1060)
                      +..+|..|+..|+|||+|+|.+.||++|+.+|. ..||.|+|+||.++.+.|+.+|++||+++..+|||+||+|||+|||
T Consensus       535 l~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlN  614 (923)
T KOG0387|consen  535 LAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLN  614 (923)
T ss_pred             HHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccc
Confidence            999999999999999999999999999999999 6899999999999999999999999999999999999999999999


Q ss_pred             cccCCEEEEeCCCCCchhhhhhhhhhhhhCCcCcEEEEEEecCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHHHHH
Q 001526          837 LTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLR  916 (1060)
Q Consensus       837 Lt~A~~VIi~D~~WNp~~~~QAiGRa~RiGQ~k~V~VyrLvt~gTiEE~I~~rq~~K~~l~~~~~~~~~~~r~fs~~eL~  916 (1060)
                      ||+||+||||||.|||+++.||..|||||||+++|.||||++.|||||+||.+|++|+.|.+.++.++++.|||...+|.
T Consensus       615 LTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~  694 (923)
T KOG0387|consen  615 LTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLH  694 (923)
T ss_pred             cccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCchhhHHHHHhhhcCCCCCChHHHHHHHHhhhcCccccccCcccccchhhhhccchHHHH-HhccCcccc
Q 001526          917 ELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSKTARVQVVQEEEEA-TRRKGTAFV  995 (1060)
Q Consensus       917 eLf~~~~~~~~~s~tq~~~~~~~~~~~~~d~~~~~~~~~~~~~~i~g~~~h~~l~~~~~~~~~~~~~~~~-~~~~~~~~~  995 (1060)
                      +||++...|.+...|+....+.|.. ...+.....+++|.+...+.++++|..+|+.-.+....++.++. .+.....++
T Consensus       695 dLFsl~~~G~~~~~te~~~~~~~~~-~~~~lk~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~il  773 (923)
T KOG0387|consen  695 DLFSLKDFGDDGESTETSSKEVHRN-EKVNLKRNSSIDFEEKEDLLALSKHSELSSSVSNGSSEEEVEEAKDREMIKPIL  773 (923)
T ss_pred             HHhCCCCCCcCcchhhhhhhhhhhh-HHHHHhhcccccchhhhhhhhhccccccccccCchHHHHHHHHHhhhhhhhhhh
Confidence            9999999999999999888777765 34445566788899999999999999999887777777664443 334455789


Q ss_pred             cCCCCcccccccCCCcccccCccccccccc-CCCCcchhhhchhHHHHHHHHHHHHhhccccc
Q 001526          996 GNSSSSYLVARNVDGAEYAFNPRDIKLNKK-SSSPKNEAKLKESDIKERIKRLSQLISNKAWL 1057 (1060)
Q Consensus       996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1057 (1060)
                      |+-+.++.+.+...++.++++++...+.++ +.++++.+.+.........++++..+++..+|
T Consensus       774 g~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~  836 (923)
T KOG0387|consen  774 GSLSDSVVNNHRNEEEKNIIETEASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKV  836 (923)
T ss_pred             ccchhhhHHhhhhhhhhccccccccchhhhhccccccchhhhhhcccccCcchhhccccCCCc
Confidence            998888888999999999999999988876 67889999998888888888999988887765

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>cd00984 DnaB_C DnaB helicase C terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1060
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 8e-57
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-56
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 1e-53
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 6e-51
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 3e-21
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure 
Iteration: 1

 Score =  219 bits (557), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 161/557 (28%), Positives = 275/557 (49%), Gaps = 65/557 (11%)
Query: 392 IGNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQICGFLAGLFHSRL--- 443
           +  +L PHQREG+++LW            G I+ D+MGLGKT+Q    +  L        
Sbjct: 52  LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCK 111
Query: 444 --IKRALVVAPKTLLSHWIKELTAVGLSAKIREYF---GTCVKTRQYELQYVLQDKGVLL 498
             I + +VV+P +L+ +W  E+    L  +++      G+  +     + ++ Q    + 
Sbjct: 112 PEIDKVIVVSPSSLVRNWYNEV-GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIP 170
Query: 499 TTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHR 558
           T   I+   +  L        + G        +I DEGH +KN   Q   +L  + +  R
Sbjct: 171 TPILIISYETFRLHAEVLHKGKVG-------LVICDEGHRLKNSDNQTYLALNSMNAQRR 223
Query: 559 IIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIGSAV 618
           ++ISGTPIQN+L E ++L +F    +LG  + FK+++E+PIL+G D  A D+++  G   
Sbjct: 224 VLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283
Query: 619 AKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYEAFLNSEI 678
            +EL   +    +RR  + +        S  L  K E +V   LT  Q++LY+ FL    
Sbjct: 284 LQELISIVNRCLIRRTSDIL--------SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAK 335
Query: 679 VLSAFDGSPLAALTIL-----KKICDHPLLLTKRA--AEDVLDGMDSML--NPEDAALAE 729
            + +     ++  ++      KK+C+HP L+ ++    E+  DG   +   N    A+  
Sbjct: 336 PVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEP 395
Query: 730 KLA--MHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPEGHNVLIFSQTRKMLNLIQE 787
           +L+  M + D                   +IL++      +   V++ S   + L+L ++
Sbjct: 396 QLSGKMLVLD-------------------YILAMTRTTTSD--KVVLVSNYTQTLDLFEK 434
Query: 788 SIGSKGYKFLRIDGTTKASDRVKIVNDFQEGDVAP--IFLLTSQVGGLGLTLTKADRVIV 845
              ++ Y ++R+DGT     R KIV  F     +P  IF+L+S+ GG GL L  A+R+++
Sbjct: 435 LCRNRRYLYVRLDGTMSIKKRAKIVERFNNPS-SPEFIFMLSSKAGGCGLNLIGANRLVM 493
Query: 846 VDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKE 905
            DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI ++Q  K  L     + ++
Sbjct: 494 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQ 553
Query: 906 QI-RYFSQQDLRELLSL 921
            + R+FS  +LREL SL
Sbjct: 554 DVERHFSLGELRELFSL 570
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1060
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 1e-172
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-138
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-116
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 4e-76
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-69
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 1e-40
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 3e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 6e-10
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 6e-08
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 1e-06
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 2e-07
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
 Score =  517 bits (1334), Expect = e-172
 Identities = 167/607 (27%), Positives = 281/607 (46%), Gaps = 69/607 (11%)

Query: 389 PGKIGNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQICGFLAGLFHSR- 442
              +  +L PHQREG+++LW            G I+ D+MGLGKT+Q    +  L     
Sbjct: 49  DPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSP 108

Query: 443 ----LIKRALVVAPKTLLSHWIKELTA-VGLSAKIREYFGTCVKTRQYELQYVLQDKG-- 495
                I + +VV+P +L+ +W  E+   +G   +     G        +L   +  +G  
Sbjct: 109 DCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMR 168

Query: 496 ----VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLL 551
               +L+ +Y+  R +++ L                   +I DEGH +KN   Q   +L 
Sbjct: 169 IPTPILIISYETFRLHAEVLHKGK------------VGLVICDEGHRLKNSDNQTYLALN 216

Query: 552 EIPSAHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDRE 611
            + +  R++ISGTPIQN+L E ++L +F    +LG  + FK+++E+PIL+G D  A D++
Sbjct: 217 SMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKD 276

Query: 612 KRIGSAVAKELRERIQPYFLRRLKNEVFHEDDVTSSATLSKKNEMIVWLRLTSCQRQLYE 671
           +  G    +EL   +    +RR  + +        S  L  K E +V   LT  Q++LY+
Sbjct: 277 RAAGEQKLQELISIVNRCLIRRTSDIL--------SKYLPVKIEQVVCCNLTPLQKELYK 328

Query: 672 AFLNSEIVLSAFDG-----SPLAALTILKKICDHPLLL--TKRAAEDVLDGMDSMLNPED 724
            FL     + +        S L+++T LKK+C+HP L+       E+  DG   +     
Sbjct: 329 LFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQN- 387

Query: 725 AALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLIPE-GHNVLIFSQTRKMLN 783
                               + Q    S K+  +  +L          V++ S   + L+
Sbjct: 388 --------------YSTKAVEPQL---SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430

Query: 784 LIQESIGSKGYKFLRIDGTTKASDRVKIVNDF-QEGDVAPIFLLTSQVGGLGLTLTKADR 842
           L ++   ++ Y ++R+DGT     R KIV  F        IF+L+S+ GG GL L  A+R
Sbjct: 431 LFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR 490

Query: 843 VIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATE 902
           +++ DP WNP+ D Q++ R +R GQKK   +YRL++ GT+EEKI ++Q  K  L     +
Sbjct: 491 LVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVD 550

Query: 903 HKEQI-RYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGI 961
            ++ + R+FS  +LREL SL ++   +S T  +         N  +          T  +
Sbjct: 551 EEQDVERHFSLGELRELFSLNEK--TLSDTHDRFRCRRCV--NGRQVRPPPDDSDCTCDL 606

Query: 962 AGVSHHS 968
           +   H +
Sbjct: 607 SNWHHCA 613
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1060
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 4e-44
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-42
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-37
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 1e-30
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 3e-17
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 8e-12
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 6e-07
d1rifa_282 c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 3e-04
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 9e-04
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 0.004
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  159 bits (403), Expect = 4e-44
 Identities = 72/258 (27%), Positives = 125/258 (48%), Gaps = 17/258 (6%)

Query: 387 MLPGKIGNMLFPHQREGLRWLWSLHC-----QGKGGILGDDMGLGKTMQICGFLAGLFHS 441
           ++   +  +L PHQREG+++LW            G I+ D+MGLGKT+Q    +  L   
Sbjct: 47  VVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQ 106

Query: 442 RL-----IKRALVVAPKTLLSHWIKEL-TAVGLSAKIREYFGTCVKTRQYELQYVLQDKG 495
                  I + +VV+P +L+ +W  E+   +G   +     G        +L   +  +G
Sbjct: 107 SPDCKPEIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQG 166

Query: 496 VLLTTYDIVRNNSKSLRGSSFISDEAGDDDAIWDYMILDEGHLIKNPSTQRAKSLLEIPS 555
           + + T  ++ +        +F              +I DEGH +KN   Q   +L  + +
Sbjct: 167 MRIPTPILIISYE------TFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNA 220

Query: 556 AHRIIISGTPIQNNLKELWALFNFCCPELLGDNKWFKEKYELPILRGNDKHALDREKRIG 615
             R++ISGTPIQN+L E ++L +F    +LG  + FK+++E+PIL+G D  A D+++  G
Sbjct: 221 QRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280

Query: 616 SAVAKELRERIQPYFLRR 633
               +EL   +    +RR
Sbjct: 281 EQKLQELISIVNRCLIRR 298
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1060
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.91
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.9
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.89
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.89
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.88
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.86
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.86
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.84
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.84
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.82
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.81
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.8
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.8
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.75
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.72
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.71
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.69
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.63
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.53
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.52
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.49
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.49
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.46
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.45
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.44
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.44
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.42
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.4
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.39
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.38
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.36
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.33
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.32
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.28
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.28
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.2
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.2
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.84
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.71
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.05
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.99
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.82
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.81
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 97.02
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 96.96
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 95.98
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 95.67
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 95.03
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 94.79
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.5
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 93.73
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 93.18
d2qy9a2211 GTPase domain of the signal recognition particle r 92.57
d1okkd2207 GTPase domain of the signal recognition particle r 92.43
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 92.0
d1vmaa2213 GTPase domain of the signal recognition particle r 91.92
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 91.66
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 91.47
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 88.68
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 86.35
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 86.16
d1ls1a2207 GTPase domain of the signal sequence recognition p 84.92
d1j8yf2211 GTPase domain of the signal sequence recognition p 84.71
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 81.43
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 80.42
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=362.67  Aligned_cols=272  Identities=32%  Similarity=0.530  Sum_probs=222.3

Q ss_pred             CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf             346865138999638999999999999669876203-----799589999999982191345355666664102368994
Q 001526          648 ATLSKKNEMIVWLRLTSCQRQLYEAFLNSEIVLSAF-----DGSPLAALTILKKICDHPLLLTKRAAEDVLDGMDSMLNP  722 (1060)
Q Consensus       648 ~~Lp~k~e~vv~~~Ls~~Q~~lY~~~l~~~~~~~~~-----~~~~l~~l~~Lrkic~hP~L~~~~~~~~~~~~~~~~~~~  722 (1060)
                      ..||+|.+.+++|+|++.|+.+|+.++.........     ....+..++.||++||||.|+......... +.....  
T Consensus         7 k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~-~~~~~~--   83 (346)
T d1z3ix1           7 KYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEE-GFDGAL--   83 (346)
T ss_dssp             GTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCT-TCTTGG--
T ss_pred             CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCC-CCCCHH--
T ss_conf             40889879999969799999999999998999986544871689999999999995799886111102211-232003--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             78999999998896542112455311232115999999998664-49980689823299999999998525991999979
Q 001526          723 EDAALAEKLAMHIADVAEKDDFQEQHDNISCKISFILSLLDKLI-PEGHNVLIFSQTRKMLNLIQESIGSKGYKFLRIDG  801 (1060)
Q Consensus       723 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~LL~~~~-~~g~KvLIFsq~~~~ld~L~~~L~~~gi~~~ridG  801 (1060)
                                   ................|+|+..|.++|..+. .+|+|+||||+|+.++++|+.+|...|+++.+++|
T Consensus        84 -------------~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G  150 (346)
T d1z3ix1          84 -------------DLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDG  150 (346)
T ss_dssp             -------------GTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECS
T ss_pred             -------------HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             -------------3123341000014001789999999999988751895168863014567999997630024110111


Q ss_pred             CCCHHHHHHHHHHHHCCCC-CCEEEEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
Q ss_conf             9998899999998606999-658999337764345855679899909999911354553433230996749999993199
Q 001526          802 TTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCG  880 (1060)
Q Consensus       802 ~~s~~eR~~iI~~F~~~~~-~~VlLlST~agg~GLNLt~A~~VIi~D~~WNP~~~~QAiGRa~RiGQ~k~V~VyrLit~g  880 (1060)
                      +++..+|+++++.|+++.. ..|||+++++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||||++.|
T Consensus       151 ~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~  230 (346)
T d1z3ix1         151 TMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG  230 (346)
T ss_dssp             SCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECC
T ss_conf             00278899999865102343302540331444335656430799945788615586763334034899843899987389


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             9999999999999879999820531-02457998899987699999870144898876
Q 001526          881 TVEEKIYRKQIFKGGLFKTATEHKE-QIRYFSQQDLRELLSLPKQGFDVSLTQQQLHE  937 (1060)
Q Consensus       881 TiEEkI~~rq~~K~~l~~~~~~~~~-~~r~fs~~eL~eLf~~~~~~~~~s~tq~~~~~  937 (1060)
                      ||||+||++|..|..++..++++.+ ..+.|+.++|++||++....  .+.|+..+.-
T Consensus       231 TiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~lf~~~~~~--~~~t~~~~~~  286 (346)
T d1z3ix1         231 TIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKT--LSDTHDRFRC  286 (346)
T ss_dssp             SHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCSSC--SCHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCCC--CCCCHHHHCC
T ss_conf             8999999999999999998758865554028999999996478765--4201566505
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure