Citrus Sinensis ID: 001539

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------106

MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG

cccccccHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcHHHHHHHHHHcHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHcccccccccEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHcccccccccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccc

ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHccccccccEEEHHHHHHHHHcccHHHHHHcccccHcHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHccEEEEEEcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccHHccEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccEEccHccHHHHHcHHHHHHHHHccHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHccccccccccEEEEcccHEEEEccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHEEHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccc

MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLvqggispdelyDTVCKQEVEIVLTahptqinrrTLQYKHLRLSHlldyndrpdlghedrEMQIEDMMREITSVwqtdelrrhkptpvdearaGLNIVEQSLWKAVPHYLRRVSNALkkhtgkplpltcapirfgswmggdrdgnpnvtakvTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILeretssgdrheswNQALSRNqlkhhgqqapslptqlparadlpsctecndggshypklelpvtdyiplsgqdstgpespcqnacnntskpaangdgassnsyqagiscnssfaskPLLAQRKIFAESQIGRSSFqkllepslpqrsgiapyriVLGNVKEKLMKTRRRLELLLedlpcdfdpwdyYETLDQLLEPLLLCYESlqscgsgvladgrlgDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLdmgtysewdedkKLEFLTRElkgkrplvpptievpsdVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAvsgelgrpcpggtlrvvplfetvtdlrGAGLVIRKLLSIDWYRKHIIknhnghqevmvgysdsgkdagRFTAAWELYKAQEDVVAACNEFGIKVTLfhgrggsigrgggptylaiqsqppgsvmgtlrsteqgemvqakfglpqtAVRQLEIYTTAVLLAtmrppqppreEKWRNLMEEISKISCqnyrstvyenpeflayfneatpqaelgylnigsrptrrksstgighlraipwvfawtqtrfvlpawlgigaglkgvcdkgnTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIEsrlpylnpmnMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG

MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQrevgsesmerverTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVltahptqinrrtLQYKHLRLSHlldyndrpdlgHEDREMQIEDMMREITSvwqtdelrrhkptpvdearaglNIVEQSLWKAVPHYLRRVSNAlkkhtgkplpltCAPIRFGSWmggdrdgnpnvtaKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILEretssgdrhESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLepslpqrsgiapyrivlgnvkeKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCgsgvladgrlGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTrelkgkrplvpptievpsdvkEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSgelgrpcpggtlrVVPLFetvtdlrgaglVIRKLLSIDWYRKHIIknhnghqeVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVllatmrppqpprEEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRydevlvsesRQELGAELRRELLTTEKYVLvvsgheklsennrSLRRLIesrlpylnpmNMLQVEILKRLRQDDDNHKLRDALLItingiaagmrntg

MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVkeklmktrrrlellledlPCDFDPWDYYetldqlleplllcyeslQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHgrggsigrgggPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG

************SFQSFDDDCKLLGNLLNDVLQR*************RVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYND*******************ITSVWQ**************ARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRC***********************************************************************LPVTDYI********************************************************IF**********************GIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAI*********************QAKFGLPQTAVRQLEIYTTAVLLAT***********WRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGS********TGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEK*******LRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAA******

***************SFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQS*****************KQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVR*********KSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLA*************SFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLL*******DPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLAT***********WRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLN******************AIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQD***HKLRDALLITINGIAAGMRNT*

MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQRE***********TRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILER*********SWNQALSRN**********SLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSG************ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG

****TDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTM*******TAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTR**SSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAG*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVxxxxxxxxxxxxxxxxxxxxxLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1057	2.2.26 [Sep-21-2011]
Q8GVE8		1032	Phosphoenolpyruvate carbo	yes	no	0.975	0.999	0.769	0.0
Q6R2V6		1221	Phosphoenolpyruvate carbo	N/A	no	0.583	0.505	0.565	0.0
P30694		966	C4 phosphoenolpyruvate ca	N/A	no	0.538	0.589	0.479	1e-156
Q5GM68		963	Phosphoenolpyruvate carbo	no	no	0.538	0.590	0.487	1e-156
P29194		960	Phosphoenolpyruvate carbo	N/A	no	0.538	0.592	0.477	1e-155
Q02735		966	Phosphoenolpyruvate carbo	N/A	no	0.536	0.586	0.472	1e-155
P51059		967	Phosphoenolpyruvate carbo	N/A	no	0.538	0.588	0.477	1e-154
Q01647		967	Phosphoenolpyruvate carbo	N/A	no	0.538	0.588	0.479	1e-154
Q9MAH0		967	Phosphoenolpyruvate carbo	no	no	0.538	0.588	0.474	1e-154
Q9FV66		965	Phosphoenolpyruvate carbo	N/A	no	0.538	0.589	0.477	1e-154

>sp\|Q8GVE8\|CAPP4_ARATH Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1	Back alignment and function desciption

 Score = 1634 bits (4230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 814/1058 (76%), Positives = 913/1058 (86%), Gaps = 27/1058 (2%)

Query: 1    MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLS 60
            MTDTTDDIAEEISFQSF+DDCKLLG+L +DVLQREVG+  ME+VER R+LAQSA  +R++
Sbjct: 1    MTDTTDDIAEEISFQSFEDDCKLLGSLFHDVLQREVGNPFMEKVERIRILAQSALNLRMA 60

Query: 61   GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKS 120
            GIEDTA LLEKQL SEISKM LEEAL LAR F+H LNLMGIA+THHR+ K  NV  L++S
Sbjct: 61   GIEDTANLLEKQLTSEISKMPLEEALTLARTFTHSLNLMGIADTHHRMHKVHNVTQLARS 120

Query: 121  CDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRP 180
            CDDIFS+L+Q GISPDELY TVCKQEVEIVLTAHPTQINRRTLQYKH+R++HLL+YN R 
Sbjct: 121  CDDIFSQLLQSGISPDELYKTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLEYNTRS 180

Query: 181  DLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRV 240
            DL  EDRE  IED++REITS+WQTDELRR KPTPVDEARAGLNIVEQSLWKAVP YLRRV
Sbjct: 181  DLSVEDRETLIEDLVREITSLWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPQYLRRV 240

Query: 241  SNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD 300
            SN+LKK TGKPLPLTC P++FGSWMGGDRDGNPNVTAKVT++VSLLSRWMAIDLYIREVD
Sbjct: 241  SNSLKKFTGKPLPLTCTPMKFGSWMGGDRDGNPNVTAKVTKEVSLLSRWMAIDLYIREVD 300

Query: 301  SLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLP 360
            SLRFELS +RCSDR SRLA  ILE++   G  +    Q+ S             LPTQLP
Sbjct: 301  SLRFELSTDRCSDRFSRLADKILEKDYDRGKSNFQKQQSSS------------CLPTQLP 348

Query: 361  ARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACNNTSKPAANGDGA 420
            ARA LP+C +   G S + K E+  TDY+P        P    QN  + +       D  
Sbjct: 349  ARAHLPACIDF--GESRHTKFEIATTDYMP--------PNLQKQNEQDFSESDWEKIDNG 398

Query: 421  SSNSYQAGISCNSSFASKP-LLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLG 479
            S    ++G++   SF+S   LL QRK+F ESQ+G++SFQKLLEP   +R+G APYRIVLG
Sbjct: 399  S----RSGLTSRGSFSSTSQLLLQRKLFEESQVGKTSFQKLLEPPPLKRAGSAPYRIVLG 454

Query: 480  NVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRL 539
             VKEKL+KTRR LELL+E LPC++DP + YET DQLLEPLLLCYESLQS G+ VLADGRL
Sbjct: 455  EVKEKLVKTRRLLELLIEGLPCEYDPKNSYETSDQLLEPLLLCYESLQSSGARVLADGRL 514

Query: 540  GDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKG 599
             DLIRRV TFGMVL+KLDLRQE+ RH+EALDAIT YLDMGTYSEWDE+KKLEFLTRELKG
Sbjct: 515  ADLIRRVSTFGMVLVKLDLRQEAARHSEALDAITTYLDMGTYSEWDEEKKLEFLTRELKG 574

Query: 600  KRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLA 659
            KRPLVP  I+V  DVKEVLDTFRVAAELGS+SLGAYVISMASNASDVLAVELLQKDARLA
Sbjct: 575  KRPLVPQCIKVGPDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLA 634

Query: 660  VSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGY 719
            ++ E G+PCPGGTLRVVPLFETV DLR AG  IRKLLSIDWYR+HI KNHNGHQEVMVGY
Sbjct: 635  LTSEHGKPCPGGTLRVVPLFETVNDLRAAGPSIRKLLSIDWYREHIQKNHNGHQEVMVGY 694

Query: 720  SDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPP 779
            SDSGKDAGRFTAAWELYKAQE+VVAACNEFGIK+TLFHGRGGSIGRGGGPTYLAIQSQPP
Sbjct: 695  SDSGKDAGRFTAAWELYKAQENVVAACNEFGIKITLFHGRGGSIGRGGGPTYLAIQSQPP 754

Query: 780  GSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEI 839
            GSVMG+LRSTEQGEMVQAKFG+PQTAVRQLE+YTTAVLLAT++PPQPPREEKWRNLMEEI
Sbjct: 755  GSVMGSLRSTEQGEMVQAKFGIPQTAVRQLEVYTTAVLLATLKPPQPPREEKWRNLMEEI 814

Query: 840  SKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFA 899
            S ISCQ+YRSTVYENPEFL+YF+EATPQAELG+LNIGSRPTRRKSS+GIGHLRAIPWVFA
Sbjct: 815  SGISCQHYRSTVYENPEFLSYFHEATPQAELGFLNIGSRPTRRKSSSGIGHLRAIPWVFA 874

Query: 900  WTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAK 959
            WTQTRFVLPAWLG+GAGLKGV +KG+ +DLK MYKEWPFFQST++LIEMVL KAD  + K
Sbjct: 875  WTQTRFVLPAWLGVGAGLKGVSEKGHADDLKEMYKEWPFFQSTLELIEMVLAKADIPMTK 934

Query: 960  RYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMN 1019
             YDE LVSE R+ LG ELR+EL+TTEKYVLV+SGHEKL ++N+SL++LI+SRLPYLN MN
Sbjct: 935  HYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKLLQDNKSLKKLIDSRLPYLNAMN 994

Query: 1020 MLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 1057
            MLQVEILKRLR+D+DN+KLRDALLITINGIAAGMRNTG
Sbjct: 995  MLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 1032

Through the carboxylation of phosphoenolpyruvate (PEP) it forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1

>sp\|Q6R2V6\|CAPP2_CHLRE Phosphoenolpyruvate carboxylase 2 OS=Chlamydomonas reinhardtii GN=Ppc2 PE=2 SV=1	Back alignment and function description

>sp\|P30694\|CAPPA_FLATR C4 phosphoenolpyruvate carboxylase OS=Flaveria trinervia GN=PPCA PE=1 SV=2	Back alignment and function description

>sp\|Q5GM68\|CAPP2_ARATH Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2	Back alignment and function description

>sp\|P29194\|CAPP2_SORBI Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor PE=3 SV=1	Back alignment and function description

>sp\|Q02735\|CAPP_MEDSA Phosphoenolpyruvate carboxylase OS=Medicago sativa GN=PEPC PE=2 SV=1	Back alignment and function description

>sp\|P51059\|CAPP2_MAIZE Phosphoenolpyruvate carboxylase 2 OS=Zea mays GN=PEP4 PE=2 SV=1	Back alignment and function description

>sp\|Q01647\|CAPP1_FLAPR Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1	Back alignment and function description

>sp\|Q9MAH0\|CAPP1_ARATH Phosphoenolpyruvate carboxylase 1 OS=Arabidopsis thaliana GN=PPC1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FV66\|CAPPB_FLATR Phosphoenolpyruvate carboxylase 1 OS=Flaveria trinervia GN=PPCB PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1057
149789412		1052	phosphoenolpyruvate carboxylase [Ricinus	0.994	0.999	0.862	0.0
225423837		1061	PREDICTED: phosphoenolpyruvate carboxyla	1.0	0.996	0.849	0.0
147809570		1069	hypothetical protein VITISV_039478 [Viti	0.998	0.986	0.838	0.0
449458754		1077	PREDICTED: phosphoenolpyruvate carboxyla	1.0	0.981	0.816	0.0
449523009		1077	PREDICTED: LOW QUALITY PROTEIN: phosphoe	1.0	0.981	0.814	0.0
297851070		1061	ATPPC4 [Arabidopsis lyrata subsp. lyrata	0.998	0.994	0.820	0.0
356500014		1055	PREDICTED: phosphoenolpyruvate carboxyla	0.986	0.988	0.788	0.0
351726309		1032	phosphoenolpyruvate carboxylase [Glycine	0.976	1.0	0.795	0.0
254032062		1051	phosphoenolpyruvate carboxylase [Brassic	0.993	0.999	0.807	0.0
356496016		1053	PREDICTED: phosphoenolpyruvate carboxyla	0.993	0.997	0.795	0.0

>gi\|149789412\|gb\|ABR29877.1\| phosphoenolpyruvate carboxylase [Ricinus communis]	Back alignment and taxonomy information

 Score = 1825 bits (4726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/1058 (86%), Positives = 983/1058 (92%), Gaps = 7/1058 (0%)

Query: 1    MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLS 60
            MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGS+ ME++ER R+LAQSAC MRL+
Sbjct: 1    MTDTTDDIAEEISFQSFDDDCKLLGNLLNDVLQREVGSKFMEKLERNRILAQSACNMRLA 60

Query: 61   GIEDTAELLEKQLASEISKMTLEEALILARAFSHYLNLMGIAETHHRVRKSRNVAHLSKS 120
            GIEDTAELLEKQLA EIS+MTLEEAL LARAFSHYLNLMGIAETHHRVRK+R++ HLSKS
Sbjct: 61   GIEDTAELLEKQLALEISRMTLEEALTLARAFSHYLNLMGIAETHHRVRKARSMTHLSKS 120

Query: 121  CDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLRLSHLLDYNDRP 180
            CDDIF++L+Q GIS +ELYDTVCKQEVEIVLTAHPTQINRRTLQYKH+R++HLLDYNDRP
Sbjct: 121  CDDIFNQLLQSGISAEELYDTVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLDYNDRP 180

Query: 181  DLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRV 240
            DL HEDREM IED++REITS+WQTDELRRHKPTPVDEARAGLNIVEQSLWKA+PHYLRRV
Sbjct: 181  DLTHEDREMLIEDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKALPHYLRRV 240

Query: 241  SNALKKHTGKPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVD 300
            S ALKKHTGKPLPLTC PIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMA+DLYIREVD
Sbjct: 241  STALKKHTGKPLPLTCTPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAVDLYIREVD 300

Query: 301  SLRFELSMNRCSDRMSRLAHDILERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLP 360
            SLRFELSM +CSDR+ ++A+DIL  ETSS D HESWNQ  SR+Q K   +   SLPTQLP
Sbjct: 301  SLRFELSMVQCSDRLLKVANDILIEETSSEDHHESWNQPASRSQTKFPRK---SLPTQLP 357

Query: 361  ARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQNACN-NTSKPAANGDG 419
             RADLP+CTECNDG S YPKLELP TDY+P + Q++ G      ++ + N   P   G+G
Sbjct: 358  PRADLPACTECNDGESQYPKLELPGTDYMPFNRQEALGSSYSESSSQDINHGLPKTTGNG 417

Query: 420  ASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLG 479
            + +NS  +G S  +SF+S  L+AQRK+FAES+IGRSSFQKLLEPSLPQR GIAPYRIVLG
Sbjct: 418  SVANS--SG-SPRASFSSAQLVAQRKLFAESKIGRSSFQKLLEPSLPQRPGIAPYRIVLG 474

Query: 480  NVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRL 539
            NVK+KLM+TRRRLELLLEDLPC++D WDYYET DQLL+PLLLCYESLQSCG+GVLADGRL
Sbjct: 475  NVKDKLMRTRRRLELLLEDLPCEYDQWDYYETTDQLLDPLLLCYESLQSCGAGVLADGRL 534

Query: 540  GDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKG 599
             DLIRRV TFGMVLMKLDLRQESGRHA+ LDAIT+YL+MGTYSEWDE+KKLEFLTRELKG
Sbjct: 535  ADLIRRVATFGMVLMKLDLRQESGRHADTLDAITKYLEMGTYSEWDEEKKLEFLTRELKG 594

Query: 600  KRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLA 659
            KRPLVPPTIEV  DVKEVLD FRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLA
Sbjct: 595  KRPLVPPTIEVAPDVKEVLDAFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDARLA 654

Query: 660  VSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGY 719
            VSGELGRPCPGGTLRVVPLFETV DLRGAG VIRKLLSIDWYR+HIIKNHNGHQEVMVGY
Sbjct: 655  VSGELGRPCPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHIIKNHNGHQEVMVGY 714

Query: 720  SDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPP 779
            SDSGKDAGRFTAAWELYKAQEDVVAACN+FGIKVTLFHGRGGSIGRGGGPTYLAIQSQPP
Sbjct: 715  SDSGKDAGRFTAAWELYKAQEDVVAACNDFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPP 774

Query: 780  GSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEI 839
            GSVMGTLRSTEQGEMVQAKFGLP TA+RQLEIYTTAVLLAT+RPP PPREE+WRN+MEEI
Sbjct: 775  GSVMGTLRSTEQGEMVQAKFGLPHTAIRQLEIYTTAVLLATLRPPHPPREEQWRNVMEEI 834

Query: 840  SKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFA 899
            SKISCQNYRSTVYENPEFLAYF+EATPQAELG+LNIGSRPTRRKSSTGIGHLRAIPWVFA
Sbjct: 835  SKISCQNYRSTVYENPEFLAYFHEATPQAELGFLNIGSRPTRRKSSTGIGHLRAIPWVFA 894

Query: 900  WTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAK 959
            WTQTRFVLPAWLG+GAGLKG C+KG TEDLKAMYKEWPFFQSTIDLIEMVLGKAD  IAK
Sbjct: 895  WTQTRFVLPAWLGVGAGLKGACEKGFTEDLKAMYKEWPFFQSTIDLIEMVLGKADIPIAK 954

Query: 960  RYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMN 1019
             YDEVLVSESR+ELGAELR ELLTTEKYVLVVSGHEKLS+NNRSLRRLIESRLPYLNPMN
Sbjct: 955  HYDEVLVSESRRELGAELRSELLTTEKYVLVVSGHEKLSQNNRSLRRLIESRLPYLNPMN 1014

Query: 1020 MLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 1057
            MLQVE+LKRLR+DDDN+KLRDALLITINGIAAGMRNTG
Sbjct: 1015 MLQVEVLKRLRRDDDNNKLRDALLITINGIAAGMRNTG 1052

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225423837\|ref\|XP_002280842.1\| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147809570\|emb\|CAN62388.1\| hypothetical protein VITISV_039478 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449458754\|ref\|XP_004147112.1\| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Cucumis sativus] gi\|406353253\|gb\|AFS33792.1\| phosphoenolpyruvate carboxylase protein [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449523009\|ref\|XP_004168517.1\| PREDICTED: LOW QUALITY PROTEIN: phosphoenolpyruvate carboxylase 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297851070\|ref\|XP_002893416.1\| ATPPC4 [Arabidopsis lyrata subsp. lyrata] gi\|297339258\|gb\|EFH69675.1\| ATPPC4 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356500014\|ref\|XP_003518830.1\| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|351726309\|ref\|NP_001237378.1\| phosphoenolpyruvate carboxylase [Glycine max] gi\|45505267\|gb\|AAS67005.1\| Phosphoenolpyruvate carboxylase [Glycine max]	Back alignment and taxonomy information

>gi\|254032062\|gb\|ACT54615.1\| phosphoenolpyruvate carboxylase [Brassica napus]	Back alignment and taxonomy information

>gi\|356496016\|ref\|XP_003516866.1\| PREDICTED: phosphoenolpyruvate carboxylase 4-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1057
TAIR\|locus:2012448		1032	PPC4 "phosphoenolpyruvate carb	0.664	0.680	0.713	0.0
TAIR\|locus:2009600		967	PPC1 "phosphoenolpyruvate carb	0.465	0.508	0.487	2.3e-188
TAIR\|locus:2086315		968	PPC3 "phosphoenolpyruvate carb	0.469	0.512	0.485	3e-185
UNIPROTKB\|Q9FV66		965	PPCB "Phosphoenolpyruvate carb	0.517	0.566	0.455	2.3e-183
UNIPROTKB\|P30694		966	PPCA "C4 phosphoenolpyruvate c	0.517	0.566	0.455	1.3e-182
UNIPROTKB\|Q9FV65		967	PPCC "Phosphoenolpyruvate carb	0.517	0.565	0.446	6.2e-181
DICTYBASE\|DDB_G0287723		931	DDB_G0287723 "Phosphoenolpyruv	0.484	0.549	0.474	2.7e-180
TAIR\|locus:2041529		963	PPC2 "phosphoenolpyruvate carb	0.471	0.517	0.498	5.5e-180
TIGR_CMR\|SO_0274		881	SO_0274 "phosphoenolpyruvate c	0.485	0.582	0.478	4.5e-178
UNIPROTKB\|P00864		883	ppc "Ppc" [Escherichia coli K-	0.487	0.583	0.464	5.2e-175

TAIR\|locus:2012448 PPC4 "phosphoenolpyruvate carboxylase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2554 (904.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 512/718 (71%), Positives = 578/718 (80%)

Query:   342 RNQLKHHGQQAPS-LPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPE 400
             R +     QQ+ S LPTQLPARA LP+C +   G S + K E+  TDY+P        P 
Sbjct:   329 RGKSNFQKQQSSSCLPTQLPARAHLPACIDF--GESRHTKFEIATTDYMP--------PN 378

Query:   401 SPCQNACNNTSKPAANGDGASSNSYQAGISCNSSFAS-KPLLAQRKIFAESQIGRSSFQK 459
                QN  + +       D  S    ++G++   SF+S   LL QRK+F ESQ+G++SFQK
Sbjct:   379 LQKQNEQDFSESDWEKIDNGS----RSGLTSRGSFSSTSQLLLQRKLFEESQVGKTSFQK 434

Query:   460 LLEPSLPQRSGIAPYRIVLGNVXXXXXXXXXXXXXXXXXXPCDFDPWDYYXXXXXXXXXX 519
             LLEP   +R+G APYRIVLG V                  PC++DP + Y          
Sbjct:   435 LLEPPPLKRAGSAPYRIVLGEVKEKLVKTRRLLELLIEGLPCEYDPKNSYETSDQLLEPL 494

Query:   520 XXXXXXXQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMG 579
                    QS G+ VLADGRL DLIRRV TFGMVL+KLDLRQE+ RH+EALDAIT YLDMG
Sbjct:   495 LLCYESLQSSGARVLADGRLADLIRRVSTFGMVLVKLDLRQEAARHSEALDAITTYLDMG 554

Query:   580 TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISM 639
             TYSEWDE+KKLEFLTRELKGKRPLVP  I+V  DVKEVLDTFRVAAELGS+SLGAYVISM
Sbjct:   555 TYSEWDEEKKLEFLTRELKGKRPLVPQCIKVGPDVKEVLDTFRVAAELGSESLGAYVISM 614

Query:   640 ASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSID 699
             ASNASDVLAVELLQKDARLA++ E G+PCPGGTLRVVPLFETV DLR AG  IRKLLSID
Sbjct:   615 ASNASDVLAVELLQKDARLALTSEHGKPCPGGTLRVVPLFETVNDLRAAGPSIRKLLSID 674

Query:   700 WYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXX 759
             WYR+HI KNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQE+VVAACNEFGIK+TLFH  
Sbjct:   675 WYREHIQKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQENVVAACNEFGIKITLFHGR 734

Query:   760 XXXXXXXXXPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLA 819
                      PTYLAIQSQPPGSVMG+LRSTEQGEMVQAKFG+PQTAVRQLE+YTTAVLLA
Sbjct:   735 GGSIGRGGGPTYLAIQSQPPGSVMGSLRSTEQGEMVQAKFGIPQTAVRQLEVYTTAVLLA 794

Query:   820 TMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRP 879
             T++PPQPPREEKWRNLMEEIS ISCQ+YRSTVYENPEFL+YF+EATPQAELG+LNIGSRP
Sbjct:   795 TLKPPQPPREEKWRNLMEEISGISCQHYRSTVYENPEFLSYFHEATPQAELGFLNIGSRP 854

Query:   880 TRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFF 939
             TRRKSS+GIGHLRAIPWVFAWTQTRFVLPAWLG+GAGLKGV +KG+ +DLK MYKEWPFF
Sbjct:   855 TRRKSSSGIGHLRAIPWVFAWTQTRFVLPAWLGVGAGLKGVSEKGHADDLKEMYKEWPFF 914

Query:   940 QSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSE 999
             QST++LIEMVL KAD  + K YDE LVSE R+ LG ELR+EL+TTEKYVLV+SGHEKL +
Sbjct:   915 QSTLELIEMVLAKADIPMTKHYDEQLVSEKRRGLGTELRKELMTTEKYVLVISGHEKLLQ 974

Query:  1000 NNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 1057
             +N+SL++LI+SRLPYLN MNMLQVEILKRLR+D+DN+KLRDALLITINGIAAGMRNTG
Sbjct:   975 DNKSLKKLIDSRLPYLNAMNMLQVEILKRLRRDEDNNKLRDALLITINGIAAGMRNTG 1032

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006099 "tricarboxylic acid cycle" evidence=IEA;ISS

GO:0008964 "phosphoenolpyruvate carboxylase activity" evidence=IEA;ISS;IDA

GO:0015977 "carbon fixation" evidence=IEA

TAIR\|locus:2009600 PPC1 "phosphoenolpyruvate carboxylase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2086315 PPC3 "phosphoenolpyruvate carboxylase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9FV66 PPCB "Phosphoenolpyruvate carboxylase 1" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

UNIPROTKB\|P30694 PPCA "C4 phosphoenolpyruvate carboxylase" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9FV65 PPCC "Phosphoenolpyruvate carboxylase 2" [Flaveria trinervia (taxid:4227)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287723 DDB_G0287723 "Phosphoenolpyruvate carboxylase" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

TAIR\|locus:2041529 PPC2 "phosphoenolpyruvate carboxylase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0274 SO_0274 "phosphoenolpyruvate carboxylase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P00864 ppc "Ppc" [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GVE8	CAPP4_ARATH	4, ., 1, ., 1, ., 3, 1	0.7693	0.9754	0.9990	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.1.31	0.979
3rd Layer	4.1.1	0.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1057
pfam00311		794	pfam00311, PEPcase, Phosphoenolpyruvate carboxylas	0.0
PRK00009		911	PRK00009, PRK00009, phosphoenolpyruvate carboxylas	0.0
COG2352		910	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene	0.0
PTZ00398		974	PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas	0.0
PRK00009		911	PRK00009, PRK00009, phosphoenolpyruvate carboxylas	1e-99
COG2352		910	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Ene	2e-75
pfam00311		794	pfam00311, PEPcase, Phosphoenolpyruvate carboxylas	2e-67
PTZ00398		974	PTZ00398, PTZ00398, phosphoenolpyruvate carboxylas	1e-64

>gnl\|CDD\|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	Back alignment and domain information

 Score =  834 bits (2157), Expect = 0.0
 Identities = 308/601 (51%), Positives = 410/601 (68%), Gaps = 24/601 (3%)

Query: 473  PYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSG 532
            PYR+ L  ++ +L  TR RL  LL     +  P + Y + ++LLE L L Y SL+  G G
Sbjct: 202  PYRLKLAYIRARLENTRERLAALLA--GRELPPGEAYTSAEELLEDLELIYRSLRETGGG 259

Query: 533  VLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDM-GTYSEWDEDKKLE 591
            +LADGRL DLIR+V  FG  L  LD+RQES RH +AL  ITRYL + G Y+E  E+++  
Sbjct: 260  LLADGRLLDLIRQVEVFGFHLATLDIRQESTRHEDALAEITRYLGLPGDYAELSEEERQA 319

Query: 592  FLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAEL----GSDSLGAYVISMASNASDVL 647
            +L REL+ +RPL+PP +    + +EVLDTFRV A L    G +++G Y+ISMA  ASDVL
Sbjct: 320  WLLRELETRRPLIPPDLPFSEETREVLDTFRVIARLQQEFGPEAIGTYIISMAHTASDVL 379

Query: 648  AVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIK 707
             V LL K+A L             TLRVVPLFET+ DLR A  ++R+L S+ WYR+ +  
Sbjct: 380  EVLLLAKEAGLLDPAT-----GRSTLRVVPLFETIEDLRNAPEIMRQLFSLPWYRELL-A 433

Query: 708  NHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGG 767
                 QEVM+GYSDS KD G  T+ WELYKAQE +V    ++G+K+ LFHGRGGS+GRGG
Sbjct: 434  GRGDLQEVMLGYSDSNKDGGFLTSNWELYKAQEALVKVAEKYGVKLRLFHGRGGSVGRGG 493

Query: 768  GPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPP 827
            GP Y AI +QPPG++ G +R TEQGE++ +K+GLP+ A+R LE+YT AVL A++ PP PP
Sbjct: 494  GPAYEAILAQPPGTLNGRIRITEQGEVIASKYGLPELALRNLELYTAAVLEASLLPPPPP 553

Query: 828  REEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTG 887
            +  +WR +MEE+S+ S + YR+ VYE P+F+ YF +ATP  E+G LNIGSRP RRK S G
Sbjct: 554  KIPEWREIMEELSERSRKAYRALVYETPDFVDYFRQATPIQEIGKLNIGSRPARRKGSGG 613

Query: 888  IGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DKGNTEDLKAMYKEWPFFQSTIDL 945
            I  LRAIPWVF+WTQ+RF+LPAW G+G  L+     D GN + L+ MY+EWPFF++ I  
Sbjct: 614  IESLRAIPWVFSWTQSRFLLPAWYGVGTALQAFLQKDPGNLKLLREMYREWPFFRTLISN 673

Query: 946  IEMVLGKADTHIAKRYDEVLVS-ESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSL 1004
            +EMVL KAD  IA+ Y ++LV  E R+ L  ++R E   T + VL ++G ++L ++N  L
Sbjct: 674  VEMVLAKADLQIARHYVQLLVDPELRERLFEQIRAEYELTRELVLKITGQKELLDDNPVL 733

Query: 1005 RRLIESRLPYLNPMNMLQVEILKRLRQ--------DDDNHKLRDALLITINGIAAGMRNT 1056
            +R I  R PY++P+N LQVE+LKRLRQ           +  LRDAL++TINGIAAGMRNT
Sbjct: 734  QRSIRLRNPYIDPLNYLQVELLKRLRQANEQGPSTYSRDELLRDALILTINGIAAGMRNT 793

Query: 1057 G 1057
            G
Sbjct: 794  G 794

Length = 794

>gnl\|CDD\|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>gnl\|CDD\|234570 PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|215852 pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	Back alignment and domain information

>gnl\|CDD\|173589 PTZ00398, PTZ00398, phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1057
COG2352		910	Ppc Phosphoenolpyruvate carboxylase [Energy produc	100.0
PRK00009		911	phosphoenolpyruvate carboxylase; Reviewed	100.0
PTZ00398		974	phosphoenolpyruvate carboxylase; Provisional	100.0
PF00311		794	PEPcase: Phosphoenolpyruvate carboxylase; InterPro	100.0
PRK13655		494	phosphoenolpyruvate carboxylase; Provisional	100.0
TIGR02751		506	PEPCase_arch phosphoenolpyruvate carboxylase, arch	100.0
PF14010		491	PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3	98.73
COG1892		488	Phosphoenolpyruvate carboxylase [Carbohydrate tran	97.92
PF03328		221	HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family	96.03
PRK10558		256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	95.88
TIGR03239		249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	95.61
TIGR01064		473	pyruv_kin pyruvate kinase. This enzyme is a homote	92.02
TIGR01588		288	citE citrate lyase, beta subunit. This is a model	89.77
TIGR02311		249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	87.53
PRK05826		465	pyruvate kinase; Provisional	86.4
PRK08187		493	pyruvate kinase; Validated	85.66
PLN02623		581	pyruvate kinase	85.47
PRK09206		470	pyruvate kinase; Provisional	83.4
PTZ00300		454	pyruvate kinase; Provisional	81.05
PRK06354		590	pyruvate kinase; Provisional	80.05

>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=7.3e-260  Score=2235.42  Aligned_cols=886  Identities=46%  Similarity=0.784  Sum_probs=835.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHhhhhChhHHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001539           13 SFQSFDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAF   92 (1057)
Q Consensus        13 ~~~~l~~dv~lLg~lLg~vl~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~arAf   92 (1057)
                      +.+.++.||++||.+||++|+++.|+++|++||.||++++..   |. ++..+    ..+|.+.+.+|+.+++..++|||
T Consensus         5 ~~~~lr~~v~~Lg~lLge~i~e~~g~~~~e~ve~ir~~s~~~---r~-~~~~~----~~~L~~~l~~Ls~~~~~~vaRaF   76 (910)
T COG2352           5 KYSALRSDVSMLGRLLGETIREAEGEAILELVETIRKLSKES---RA-GDQAD----RQELEATLANLSNDEAIPVARAF   76 (910)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh---hc-cchhh----HHHHHHHHcCCCHhhhhHHHHHH
Confidence            567899999999999999999999999999999999999766   43 22222    46788999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHhhhcc---CCCccHHHHHHHHHhCCCCHHHHHHHHhccceeEeeecCCCccchhhHHHHHHH
Q 001539           93 SHYLNLMGIAETHHRVRKSRNVA---HLSKSCDDIFSKLVQGGISPDELYDTVCKQEVEIVLTAHPTQINRRTLQYKHLR  169 (1057)
Q Consensus        93 s~~f~L~NiAEe~~r~r~~r~~~---~~~~sl~~~~~~L~~~g~s~~~i~~~L~~~~v~pVlTAHPTE~~RrTvl~~~~r  169 (1057)
                      |+|++|+||||+.|+.|+++...   ...+||..++++|++.|+|++++.+.|.++.|+|||||||||++||||++|+++
T Consensus        77 s~f~~L~NiaEd~~~~~r~~~~~~~~~~~~sL~~~~~~Lk~~~~~~~~v~~~l~~l~v~lVLTAHPTEv~RrTv~~~~~~  156 (910)
T COG2352          77 SQFLLLANIAEDYHRIRRRQIHEAAGDSDGSLAATLKKLKEQGLSPETVARALENLNVELVLTAHPTEVQRRTVIDKQRE  156 (910)
T ss_pred             HHHhhhhhHHHHhhhHhhhhhhhccCCCcchHHHHHHHHHhcCCCHHHHHHHHHhCceeEEEecCchHHHHHHHHHHHHH
Confidence            99999999999999999876332   245999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHcccCccccCCCChHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC
Q 001539          170 LSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTG  249 (1057)
Q Consensus       170 I~~lL~~~d~~~~~~~e~~~~~~~l~~~I~~LW~T~eiR~~kPtv~DE~~~gL~y~~~sl~~avP~l~~~l~~al~~~~g  249 (1057)
                      |.++|.++|..++++. ++.++++|+++|..+||||+||..||||.|||+||++||++|||++||+++++++.++++++|
T Consensus       157 I~~lL~~~~~~~~~~~-~~~~~~~L~~~I~~~W~TdeiR~~rptv~DEi~~gl~y~~~sl~~avP~l~r~~~~~~~~~~~  235 (910)
T COG2352         157 INRLLRKLDHADLSDE-RARIRRRLRRLIAQLWQTDEIRKLRPTVLDEIKNGLAYYENSLWQAVPKLLRELNEALQETFG  235 (910)
T ss_pred             HHHHHHHhhcccchhH-HHHHHHHHHHHHHHHhhhhHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999998888776 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccHHHHHHHHHHHhh
Q 001539          250 KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSM----NRCSDRMSRLAHDILER  325 (1057)
Q Consensus       250 ~~~p~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~al~~Y~~~l~~L~~~LS~----s~~s~~l~~~~~~~~~~  325 (1057)
                      ...|..++|++|||||||||||||||||+||+++++++||+++++|.++|.+|.++||+    ..|++++.+++..    
T Consensus       236 ~~~~~~~~p~~~gSWiGGDRDGNPfVTae~tr~~~~~~r~~~~~~Yl~~i~~L~~eLS~S~~~~~vs~el~ala~~----  311 (910)
T COG2352         236 ELLPVEAVPLRFGSWIGGDRDGNPFVTAETTRQALLLQRWKALDLYLKEIQKLYSELSMSTRLVKVSPELLALAGE----  311 (910)
T ss_pred             cccCCCCCccccccCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcccCCHHHHHHHhc----
Confidence            77777789999999999999999999999999999999999999999999999999999    5788888776640    


Q ss_pred             hccCCCcccchhhhhhhhhhcccCCCCCCCCCCCCccCCCCCCcccCCCCCCCCCcCCCCcCCCCCCCCCCCCCCCCCCc
Q 001539          326 ETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESPCQN  405 (1057)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (1057)
                         +.                                                                           
T Consensus       312 ---~~---------------------------------------------------------------------------  313 (910)
T COG2352         312 ---SQ---------------------------------------------------------------------------  313 (910)
T ss_pred             ---Cc---------------------------------------------------------------------------
Confidence               00                                                                           


Q ss_pred             cCCCCCCCCCCCCCCCCcccccccccCCCCCCchhHHHHhhhhhhcccccccccccCCCCCCCCCCCChHHHHHHHHHHH
Q 001539          406 ACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKL  485 (1057)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~EPyR~~l~~i~~rL  485 (1057)
                                                                                +...++.+||||++|.+|+.||
T Consensus       314 ----------------------------------------------------------d~~~~r~~EPYR~al~~i~~rL  335 (910)
T COG2352         314 ----------------------------------------------------------DQSIRRADEPYRRALKYIRSRL  335 (910)
T ss_pred             ----------------------------------------------------------cccchhccccHHHHHHHHHHHH
Confidence                                                                      0112467799999999999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCCCcCCCHHHhHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHcCccccccccccchhHH
Q 001539          486 MKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRH  565 (1057)
Q Consensus       486 ~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~sL~~~g~~~~a~~~l~~lir~v~~FGfhla~LDIRQnS~~H  565 (1057)
                      .+|.+.+.+.+.+.. ...+...|.+++||++||..|++||.+||++.+|+|.|.+++++|++|||||++|||||||++|
T Consensus       336 ~~T~~~l~~~~~~~~-~~~~~~~y~~~~el~~dL~~i~~SL~~~G~~~la~g~L~~ll~~v~~FGf~L~~LDiRQ~S~~h  414 (910)
T COG2352         336 MATQAYLDGLLAGEE-GVGPEPPYTSPEELLEDLYAIYQSLHACGMEILADGRLLDLLRRVEVFGFHLVSLDIRQESTRH  414 (910)
T ss_pred             HHHHHHHhccccccc-cCCCCcccCCHHHHHHHHHHHHHHHHhcCCceeccchHHHHHHHHHhcCceeeccccccccchH
Confidence            999999877666443 2334568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHhHHHHHHHHHHHHH----hCccccchhhhcCC
Q 001539          566 AEALDAITRYLDMG-TYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAE----LGSDSLGAYVISMA  640 (1057)
Q Consensus       566 ~~al~ei~~~~g~~-~Y~~l~E~~r~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~i~~----~g~~a~g~yIISmt  640 (1057)
                      ++|++||++++|++ +|.+|||++|++||.+||.++|||+++...+|++++++|+||+++++    +|+++|++||||||
T Consensus       415 ~~avaEL~~~ag~~~dY~~lsE~~K~~~L~~EL~s~RPL~p~~~~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma  494 (910)
T COG2352         415 EEAVAELLRYAGLGADYSSLSEEDKQAFLLRELSSRRPLLPPFWQPSEETREELATFRVAAEAKDEFGEDAIGAYIISMA  494 (910)
T ss_pred             HHHHHHHHHHccCCCChhhcCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence            99999999999998 99999999999999999999999999999999999999999999996    69999999999999


Q ss_pred             CChHhHHHHHHHHHHhcccccCCCCCCCCCCCCccccCCCCHHHHhcHHHHHHHHhccHHHHHHHhhhcCCeEEEEeecc
Q 001539          641 SNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYS  720 (1057)
Q Consensus       641 ~s~SDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETi~DL~~a~~Im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYS  720 (1057)
                      +++||||+|++|+||+||++.       +..+++|||||||||||+||+.||++||+.|+||+.|.. ++|.||||||||
T Consensus       495 ~s~SDvLev~lLlKE~Gl~~~-------~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~-~~n~QEVMlGYS  566 (910)
T COG2352         495 ESVSDVLEVLLLLKEAGLVDP-------ERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAG-RGNVQEVMLGYS  566 (910)
T ss_pred             CCHHHHHHHHHHHHHhCCCCc-------cCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcC-CCCceEEEeccc
Confidence            999999999999999999753       247899999999999999999999999999999999955 788999999999


Q ss_pred             cCCcchhhhhhhHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCCCCChhhhhhhcCCCCCcccccccccccchhhhhcC
Q 001539          721 DSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFG  800 (1057)
Q Consensus       721 DS~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~~FHGRGGSvGRGGGPt~~AIlaqP~gsv~g~iRvTEQGEvI~~kyg  800 (1057)
                      ||||||||++|||++|+||+.|+++|+++||+++|||||||||||||||+|.||+|||||||+|+||+|||||||..|||
T Consensus       567 DSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~LrlFHGRGGtVGRGGGPa~~AILsQP~gsv~g~iRiTEQGE~I~~Kyg  646 (910)
T COG2352         567 DSNKDGGYLAANWALYKAQLALVELCEKAGVELRLFHGRGGSVGRGGGPAYAAILSQPPGSVKGRIRITEQGEMIAFKYG  646 (910)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHHHhCceEEEEccCCCCCCCCCchHHHHHhcCCCcccCCceEeehhHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCCCC-CCCcHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHhhCchhHhhcCCCCCCC
Q 001539          801 LPQTAVRQLEIYTTAVLLATMRPPQ-PPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRP  879 (1057)
Q Consensus       801 ~~~lA~rnLE~~~aa~l~as~~~~~-~~~~~~~~~~md~ls~~S~~~YR~lv~~~p~F~~yF~~aTPi~ei~~LnIGSRP  879 (1057)
                      +|++|.||||.+++|+|++++.|+. .| +++|+.+||+||+.||++||++||++|+|++||+++|||.||+.|||||||
T Consensus       647 ~p~~A~~nLe~l~sAvLeAsllp~~~dp-~~~~~~iMd~ls~~S~~~YR~lV~~~pdFvdyF~~~TPi~EIs~LniGSRP  725 (910)
T COG2352         647 LPEVARRNLETLVSAVLEASLLPPKPDP-KESWRAIMDELSDISCDAYRGLVRENPDFVDYFRQATPIQEISKLNIGSRP  725 (910)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCCCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHhcCcHHHHhcCCCCCCC
Confidence            9999999999999999999999874 45 489999999999999999999999999999999999999999999999999


Q ss_pred             CccCCC-CCCCcccccchhhhhhhhcccccchhhhhHHHHHhhhCC--CHHHHHHHHhcChhHHHHHHHHHHHHHhccHH
Q 001539          880 TRRKSS-TGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKG--NTEDLKAMYKEWPFFQSTIDLIEMVLGKADTH  956 (1057)
Q Consensus       880 akR~~~-~~ledLRAIPWVFsWtQ~R~~LPgWyGvGsAL~~~~~~~--~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~  956 (1057)
                      |||++. ++|+|||||||||||||+|+|||||||+|+|++.+++++  +.+.|++||++||||+++|+||+|+|+|+||.
T Consensus       726 A~Rk~~~~~ie~LRAIPWVFSWsQnR~mLP~WyG~Gsal~~~i~~g~~~~~~L~~m~~~WPFF~s~Lsn~emvlaKsd~~  805 (910)
T COG2352         726 ASRKPTTGGIESLRAIPWVFSWTQNRLMLPAWYGVGSALQRFIEEGPENLALLRDMYQNWPFFSSRLSNMEMVLAKSDLW  805 (910)
T ss_pred             cCCCCCCCccccccccchhhhhhhhhhcchhhhhhhHHHHHHHHcCcchHHHHHHHHhcCcHHHHHHHHHHHHHHhhhhH
Confidence            999986 559999999999999999999999999999999999887  89999999999999999999999999999999


Q ss_pred             HHHHHHhhccchh-HHHHHHHHHHHHHHHHHHHHHHhCCCccccCChhHHHHHHhhhccccccHHHHHHHHHHHh---cC
Q 001539          957 IAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR---QD 1032 (1057)
Q Consensus       957 Ia~~Y~~Ll~d~~-~~~i~~~i~~E~~~T~~~vl~itg~~~Ll~~~p~l~~si~~R~pyvdpLn~lQvelL~r~R---~~ 1032 (1057)
                      ||.+|+++++|++ .+++|++|++||+.|++++|.|||++.||++||+|++||.+||||+||||++|||||||+|   .+
T Consensus       806 iA~~Y~qll~d~~~~~~lf~~i~~e~~~T~~~vl~I~~~~~LL~d~p~La~Si~lRn~Y~dPLn~LQvELLkR~R~~~~~  885 (910)
T COG2352         806 LAEHYAQLLVDPELGERLFDQIREEYQLTRKVVLAITGHDELLADNPWLAESIALRNPYLDPLNVLQVELLKRSRQSKRG  885 (910)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhcCCHHHHHHHHHhccccChhHHHHHHHHHHHhhcccC
Confidence            9999999999999 9999999999999999999999999999999999999999999999999999999999999   45


Q ss_pred             CCchhHHHHHHHHHHHHHhhhccCC
Q 001539         1033 DDNHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus      1033 ~~~~~l~~all~TInGIAaGlrNTG 1057 (1057)
                      +.++.++++|++|||||||||||||
T Consensus       886 ~~~~~~er~i~lTInGIAaGlRNTG  910 (910)
T COG2352         886 DPDPEVERALLLTINGIAAGLRNTG  910 (910)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhccCC
Confidence            6678999999999999999999999

>PRK00009 phosphoenolpyruvate carboxylase; Reviewed	Back alignment and domain information

>PTZ00398 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []	Back alignment and domain information

>PRK13655 phosphoenolpyruvate carboxylase; Provisional	Back alignment and domain information

>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type	Back alignment and domain information

>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C	Back alignment and domain information

>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]	Back alignment and domain information

>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4	Back alignment and domain information

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	Back alignment and domain information

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase	Back alignment and domain information

>TIGR01064 pyruv_kin pyruvate kinase	Back alignment and domain information

>TIGR01588 citE citrate lyase, beta subunit	Back alignment and domain information

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>PRK05826 pyruvate kinase; Provisional	Back alignment and domain information

>PRK08187 pyruvate kinase; Validated	Back alignment and domain information

>PLN02623 pyruvate kinase	Back alignment and domain information

>PRK09206 pyruvate kinase; Provisional	Back alignment and domain information

>PTZ00300 pyruvate kinase; Provisional	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1057
3zge_A		990	Greater Efficiency Of Photosynthetic Carbon Fixatio		1e-143
3zgb_A		972	Greater Efficiency Of Photosynthetic Carbon Fixatio		1e-143
1jqo_A		970	Crystal Structure Of C4-Form Phosphoenolpyruvate Ca		1e-138
1qb4_A		883	Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruva		1e-135

>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 990

Back alignment and structure

Iteration: 1

Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/619 (43%), Positives = 360/619 (58%), Gaps = 50/619 (8%) Query: 473 PYRIVLGNVXXXXXXXXXXXXXXXXXXPCDFDPWDYYXXXXXXXXXXXXXXXXXQSCGSG 532 PYR++LG+V D Y CG Sbjct: 388 PYRVILGDVRDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDCGDH 447 Query: 533 VLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYSEWDEDKKLEF 592 V+ADG L D +R+V TFG+ L+KLD+RQES RH E LDAIT++L +G+Y EW E+K+ E+ Sbjct: 448 VIADGSLLDFLRQVSTFGLSLVKLDIRQESDRHTEVLDAITQHLGIGSYREWSEEKRQEW 507 Query: 593 LTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELL 652 L EL GKRPL+ P + +VK+ LDTF+V AEL SD GAY+ISMA++ SDVLAVELL Sbjct: 508 LLAELSGKRPLIGPDLPKTEEVKDCLDTFKVLAELPSDCFGAYIISMATSTSDVLAVELL 567 Query: 653 QKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGH 712 Q++ + LRVVPLFE + DL A + +L S+DWYR I +G Sbjct: 568 QREYHIK-----------HPLRVVPLFEKLADLEAAPAAMTRLFSMDWYRNRI----DGK 612 Query: 713 QEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHXXXXXXXXXXXPTYL 772 QEVM+GYSDSGKDAGRF+AAW+LYK QE +V EFG+K+ +FH PT+L Sbjct: 613 QEVMIGYSDSGKDAGRFSAAWQLYKTQEQIVKIAKEFGVKLVIFHGRGGTVGRGGGPTHL 672 Query: 773 AIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKW 832 A+ SQPP ++ G+LR T QGE+++ FG R L+ + A L M PP PR E W Sbjct: 673 ALLSQPPDTINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-W 731 Query: 833 RNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLR 892 R LM++++ ++ + YRS V++ P F+ YF ATP+ E G +NIGSRP++RK S GI LR Sbjct: 732 RELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLR 791 Query: 893 AIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DKGNTEDLKAMYKEWPFFQSTIDLIEMVL 950 AIPW+F+WTQTRF LP WLG GA K D N + L+ MYK WPFF+ TIDL+EMV Sbjct: 792 AIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVF 851 Query: 951 GKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIES 1010 K + IA D++LVSE + G LR T+ Y+L ++GH+ L E + L++ I Sbjct: 852 AKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRL 911 Query: 1011 RLPYLNPMNMLQVEILKRLRQDDDNHKLR------------------------------- 1039 R PY+ +N+ Q LKR+R + + LR Sbjct: 912 RDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGL 971 Query: 1040 -DALLITINGIAAGMRNTG 1057 D L++T+ GIAAGM+NTG Sbjct: 972 EDTLILTMKGIAAGMQNTG 990

PyMOL of 3zge

>pdb|3ZGB|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due To Single Amino Acid Substitution Length = 972

Back alignment and structure

>pdb|1JQO|A Chain A, Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase From Maize Length = 970

Back alignment and structure

>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate Carboxylase Length = 883

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1057
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	0.0
1jqn_A		883	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	1e-112
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	0.0
1jqo_A		970	Phosphoenolpyruvate carboxylase; beta barrel, carb	1e-107
3odm_A		560	Pepcase, PEPC, phosphoenolpyruvate carboxylase; be	1e-84
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883	Back alignment and structure

 Score =  785 bits (2028), Expect = 0.0
 Identities = 277/600 (46%), Positives = 379/600 (63%), Gaps = 22/600 (3%)

Query: 463  PSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLC 522
              + +     PYR ++ N++ +LM T+  LE  L+       P       ++L EPL  C
Sbjct: 301  ALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARLKGEELP-KPEGLLTQNEELWEPLYAC 359

Query: 523  YESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAITRYLDMGTYS 582
            Y+SLQ+CG G++A+G L D +RRV  FG+ L+++D+RQES RH EAL  +TRYL +G Y 
Sbjct: 360  YQSLQACGMGIIANGDLLDTLRRVKCFGVPLVRIDIRQESTRHTEALGELTRYLGIGDYE 419

Query: 583  EWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASN 642
             W E  K  FL REL  KRPL+P   +  ++ +EVLDT +V AE    S+ AYVISMA  
Sbjct: 420  SWSEADKQAFLIRELNSKRPLLPRNWQPSAETREVLDTCQVIAEAPQGSIAAYVISMAKT 479

Query: 643  ASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYR 702
             SDVLAV LL K+A +  +           + V PLFET+ DL  A  V+ +LL+IDWYR
Sbjct: 480  PSDVLAVHLLLKEAGIGFA-----------MPVAPLFETLDDLNNANDVMTQLLNIDWYR 528

Query: 703  KHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGS 762
              I     G Q VM+GYSDS KDAG   A+W  Y+AQ+ ++  C + GI++TLFHGRGGS
Sbjct: 529  GLI----QGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIKTCEKAGIELTLFHGRGGS 584

Query: 763  IGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATMR 822
            IGRGG P + A+ SQPPGS+ G LR TEQGEM++ K+GLP+  V  L +YT A+L A + 
Sbjct: 585  IGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLPEITVSSLSLYTGAILEANLL 644

Query: 823  PPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRR 882
            PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R
Sbjct: 645  PPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKR 703

Query: 883  KSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDKGNTEDLKAMYKEWPFFQST 942
            + + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   +L+AM ++WPFF + 
Sbjct: 704  RPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTR 763

Query: 943  IDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNR 1002
            + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L  +  
Sbjct: 764  LGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHLMADLP 823

Query: 1003 SLRRLIESRLPYLNPMNMLQVEILKRLRQ-----DDDNHKLRDALLITINGIAAGMRNTG 1057
             +   I+ R  Y +P+N+LQ E+L R RQ      + + ++  AL++TI GIAAGMRNTG
Sbjct: 824  WIAESIQLRNIYTDPLNVLQAELLHRSRQAEKEGQEPDPRVEQALMVTIAGIAAGMRNTG 883

PyMOL of 1jqn

>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Length = 883	Back alignment and structure

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970	Back alignment and structure

>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Length = 970	Back alignment and structure

>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Length = 560	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1057
d1jqoa_		936	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0
d1jqoa_		936	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	3e-84
d1jqna_		880	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	0.0
d1jqna_		880	c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Esc	2e-87

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

 Score =  576 bits (1486), Expect = 0.0
 Identities = 282/636 (44%), Positives = 392/636 (61%), Gaps = 48/636 (7%)

Query: 454  RSSFQKLLEPSLPQRSGIAPYRIVLGNVKEKLMKTRRRLELLLEDLPCDFDPWDYYETLD 513
             S   K       Q     PYR++LG+V++KL  TR R   LL     +      + +++
Sbjct: 317  GSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIE 376

Query: 514  QLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQESGRHAEALDAIT 573
            + LEPL LCY+SL  CG   +ADG L DL+R+V TFG+ L+KLD+RQES RH + +DAIT
Sbjct: 377  EFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAIT 436

Query: 574  RYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLG 633
             +L +G+Y EW EDK+ E+L  EL+GKRPL+PP +    ++ +V+  F V AEL  DS G
Sbjct: 437  THLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFG 496

Query: 634  AYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIR 693
             Y+ISMA+  SDVLAVELLQ++         G   P   L VVPLFE + DL+ A   + 
Sbjct: 497  PYIISMATAPSDVLAVELLQREC--------GVRQP---LPVVPLFERLADLQSAPASVE 545

Query: 694  KLLSIDWYRKHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEFGIKV 753
            +L S+DWY   I       Q+VMVGYSDSGKDAGR +AAW+LY+AQE++      +G+K+
Sbjct: 546  RLFSVDWYMDRIKG----KQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKL 601

Query: 754  TLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYT 813
            TLFHGRGG++GRGGGPT+LAI SQPP ++ G++R T QGE+++  FG      + L+ +T
Sbjct: 602  TLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFT 661

Query: 814  TAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYL 873
             A L   M PP  P + +WR LM+E++ ++ + YRS V +   F+ YF  ATP+ E G +
Sbjct: 662  AATLEHGMHPPVSP-KPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRM 720

Query: 874  NIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDK--GNTEDLKA 931
            NIGSRP +R+   GI  LRAIPW+F+WTQTRF LP WLG+GA  K   DK   N + LK 
Sbjct: 721  NIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKE 780

Query: 932  MYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVV 991
            MY EWPFF+ T+DL+EMV  K D  IA  YDE+LV+E  +  G +LR + + T++ +L +
Sbjct: 781  MYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQI 840

Query: 992  SGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHK-------------- 1037
            +GH+ + E +  L++ +  R PY+  +N+ Q   LKR+R  +                  
Sbjct: 841  AGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEFADENK 900

Query: 1038 ----------------LRDALLITINGIAAGMRNTG 1057
                            L D L++T+ GIAAGM+NTG
Sbjct: 901  PAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG 936

PyMOL of d1jqoa_

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 936	Back information, alignment and structure

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880	Back information, alignment and structure

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Length = 880	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1057
d1jqoa_		936	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1jqna_		880	Phosphoenolpyruvate carboxylase {Escherichia coli	100.0
d1sgja_		231	Citrate lyase, beta subunit {Deinococcus radiodura	87.23

>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate carboxylase
domain: Phosphoenolpyruvate carboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=2166.73  Aligned_cols=890  Identities=44%  Similarity=0.783  Sum_probs=830.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             89999999999999996521906999999999998974332104860038999999999980599999999999999999
Q 001539           17 FDDDCKLLGNLLNDVLQREVGSESMERVERTRVLAQSACTMRLSGIEDTAELLEKQLASEISKMTLEEALILARAFSHYL   96 (1057)
Q Consensus        17 l~~dv~lLg~lLg~vi~~~~g~~~~~~ve~ir~~~~~~~~~r~~~~~~~~~~~~~~l~~~i~~L~~~~~~~laRAFs~~f   96 (1057)
                      +++|+++||++| +||++++|+++|++||+||.+++..   |..++...    .++|.+.|.+|+++++..|+||||+||
T Consensus         1 ~~~D~~llg~ll-~vi~e~~G~~~~~~vE~iR~ls~~~---r~~~~~~~----~~~L~~~l~~L~~~~~~~v~RAFs~~f   72 (936)
T d1jqoa_           1 IEYDALLVDRFL-NILQDLHGPSLREFVQECYEVSADY---EGKGDTTK----LGELGAKLTGLAPADAILVASSILHML   72 (936)
T ss_dssp             CHHHHHHHHHHH-HHHHHHHCHHHHHHHHHHHHHHHHH---HHHCCTHH----HHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHHH---HHCCCHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             924888898899-9999850789999999999999998---72488788----999999997799899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCC------------CCCCCHHHHHHHHH-HCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHH
Q ss_conf             7996998789999732103------------89762999999999-6899978899997126404755069986431249
Q 001539           97 NLMGIAETHHRVRKSRNVA------------HLSKSCDDIFSKLV-QGGISPDELYDTVCKQEVEIVLTAHPTQINRRTL  163 (1057)
Q Consensus        97 ~L~NlAEe~~r~r~~r~~~------------~~~~sl~~~~~~L~-~~gis~~~i~~~L~~~~v~pVlTAHPTE~~RrTv  163 (1057)
                      +|+||||++|++|++|...            ..++|+.+++.+|+ +.|+++++|++.|+++.|+|||||||||++||||
T Consensus        73 ~L~NiAE~~~~~rr~R~~~~~~~~~~~~g~~~~~~sl~~al~~L~~~~g~~~e~i~~~L~~~~i~pVlTAHPTEa~RrTv  152 (936)
T d1jqoa_          73 NLANLAEEVQIAHRRRNSKLKKGGFADEGSATTESDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSL  152 (936)
T ss_dssp             HHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHTTSCCCHHHHHHHHHTCEEEEEEECCTTCCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH
T ss_conf             99999998899999999875214555556667656499999999986598999999998359566775569988726889


Q ss_pred             HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999987222999999688999999999999997066822368999399899999999886886779999999999
Q 001539          164 QYKHLRLSHLLDYNDRPDLGHEDREMQIEDMMREITSVWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNA  243 (1057)
Q Consensus       164 l~~~~rI~~lL~~~d~~~l~~~e~~~~~~~L~~~I~~LW~TdeiR~~kPtv~DE~~~gL~y~~~sl~~aiP~l~~~l~~a  243 (1057)
                      ++|+++|+.+|.++|+.++++.|+.+++++|+++|+.||||||+|..||||.||++|||+||+++||++||.+|++++++
T Consensus       153 L~~~r~I~~lL~~ld~~~lt~~e~~~~~~~L~~~I~~LW~T~eiR~~KPtv~DE~~~~l~y~~~sl~~avP~l~~~l~~a  232 (936)
T d1jqoa_         153 LQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTA  232 (936)
T ss_dssp             HHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHSCCSCCSCCCHHHHHHHHHHHHTTTTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986536698588999999999999998575310247998699999999998850587789999999999


Q ss_pred             HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf             987119-9999988983114555678989987897999999999999999999999999996503454637888889998
Q 001539          244 LKKHTG-KPLPLTCAPIRFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIREVDSLRFELSMNRCSDRMSRLAHDI  322 (1057)
Q Consensus       244 l~~~~g-~~~~~~~~~i~fgSWiGGDRDGNP~VTaevT~~~~~~~r~~a~~~Y~~~l~~L~~~LS~s~~s~~l~~~~~~~  322 (1057)
                      +.++|+ ...|..++||+|||||||||||||||||+||++|+.++|+.++++|.+++++|.++||+|.+++.+.....++
T Consensus       233 l~~~~~~~~~~~~~~~irfGSWiGGDRDGNP~VTaevT~~~l~~~r~~al~~Y~~~l~~L~~~LS~s~~~~~~~~~~~~l  312 (936)
T d1jqoa_         233 LKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEEL  312 (936)
T ss_dssp             HHTTTCCSCCCTTCCSEEEEECTTTBCTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             98647774566677720353134447989988798999999999999999999999999999708520201331578999


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             74211678753202444223210036988999898887667899876568999999876788767888889999999998
Q 001539          323 LERETSSGDRHESWNQALSRNQLKHHGQQAPSLPTQLPARADLPSCTECNDGGSHYPKLELPVTDYIPLSGQDSTGPESP  402 (1057)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (1057)
                      .+.   +.+                                .   ..+                 .              
T Consensus       313 ~~~---~~~--------------------------------~---~~~-----------------~--------------  323 (936)
T d1jqoa_         313 HSS---SGS--------------------------------K---VTK-----------------Y--------------  323 (936)
T ss_dssp             HHH---HCC--------------------------------C---CCT-----------------T--------------
T ss_pred             HHH---HHH--------------------------------H---HHH-----------------H--------------
T ss_conf             986---565--------------------------------6---677-----------------7--------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             77667889999988999887642235566877787136888766542101331000025899999989997679899999
Q 001539          403 CQNACNNTSKPAANGDGASSNSYQAGISCNSSFASKPLLAQRKIFAESQIGRSSFQKLLEPSLPQRSGIAPYRIVLGNVK  482 (1057)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~EPyR~~l~~i~  482 (1057)
                                                                                ..+....++++||||++|..|+
T Consensus       324 ----------------------------------------------------------~~~~~~~~~~~EPyR~~L~~i~  345 (936)
T d1jqoa_         324 ----------------------------------------------------------YIEFWKQIPPNEPYRVILGHVR  345 (936)
T ss_dssp             ----------------------------------------------------------CSSSCSCCCTTSHHHHHHHHHH
T ss_pred             ----------------------------------------------------------HHHHHHHCCCCHHHHHHHHHHH
T ss_conf             ----------------------------------------------------------6789875176328899999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             99999999998654069999999886899888587999999999853996440107999999998707643333332100
Q 001539          483 EKLMKTRRRLELLLEDLPCDFDPWDYYETLDQLLEPLLLCYESLQSCGSGVLADGRLGDLIRRVVTFGMVLMKLDLRQES  562 (1057)
Q Consensus       483 ~rL~~t~~~~~~~~~~~~~~~~~~~~y~~~~ell~dL~~i~~SL~~~g~~~~a~~~l~~lir~V~~FGfhla~LDiRQnS  562 (1057)
                      +||.+|+.+....+............|.+++||++||.+|++||+++|+..+|++.|.++|++|++|||||++|||||||
T Consensus       346 ~RL~~t~~~~~~~~~~~~~~~~~~~~Y~s~~ell~dL~~i~~SL~~~g~~~la~~~L~~Lir~V~~FGfhLa~LDIRQ~S  425 (936)
T d1jqoa_         346 DKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQES  425 (936)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCSTTSCCSHHHHHHHHHHHHHHHHHTSCCTTTTTHHHHHHHHHHHHTTSSSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf             99999999999875146677773234577799999999999999873863334534689999999716421135664214


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
Q ss_conf             27999999999853999999999988999999986199999999999997599999999999980921100255427999
Q 001539          563 GRHAEALDAITRYLDMGTYSEWDEDKKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSDSLGAYVISMASN  642 (1057)
Q Consensus       563 ~~H~~al~ei~~~~g~~~Y~~l~E~~k~~~L~~eL~~~rpl~~~~~~~s~~~~evl~tf~~ia~~g~~a~~~yIISmt~s  642 (1057)
                      ++|++|++||++++|+++|.+|+|++|+++|.++|.++||+.+++.+.++++++++++|++++++|+++|++||||||++
T Consensus       426 ~~H~~ai~el~~~~g~~~y~~~~e~~r~~~L~~eL~~~rpl~~~~~~~~~e~~~~l~~~~~i~~~g~~aig~YIISmt~s  505 (936)
T d1jqoa_         426 ERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATA  505 (936)
T ss_dssp             HHHHHHHHHHHHHHTSCCSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHHHHHHHHHHHHHHSCSTTEEEEEETTCCS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC
T ss_conf             89999999999865787733378688899999985578888886410034699999999999851700013203115786


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             57699999999980612348899999999873225778978982079999998316999999964069848998611467
Q 001539          643 ASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVTDLRGAGLVIRKLLSIDWYRKHIIKNHNGHQEVMVGYSDS  722 (1057)
Q Consensus       643 aSDvL~Vl~Lakeagl~~~~~~g~~~~~~~l~VvPLFETidDL~na~~im~~Ll~~p~Yr~~L~~~~~~~QeVMlGYSDS  722 (1057)
                      +||||+|++|+|++|+.           ++|+||||||||+||+|||.||++||++|+||+||    +|+||||||||||
T Consensus       506 ~sDvL~V~lLak~~g~~-----------~~l~VvPLFETi~DL~~a~~il~~Ll~~p~yr~~l----~~~QeVMlGYSDS  570 (936)
T d1jqoa_         506 PSDVLAVELLQRECGVR-----------QPLPVVPLFERLADLQSAPASVERLFSVDWYMDRI----KGKQQVMVGYSDS  570 (936)
T ss_dssp             THHHHHHHHHHHHTCCS-----------SCCCEEEEECSHHHHHTHHHHHHHHHTCHHHHHHH----TSEEEEEEESTTH
T ss_pred             HHHHHHHHHHHHHCCCC-----------CCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHH----CCCEEEEECCCCC
T ss_conf             78899999999971998-----------88773630334999984299999998382888743----1042777535555


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCH
Q ss_conf             76422551569999999999999998199399953799888989870355531199997556433124553365201997
Q 001539          723 GKDAGRFTAAWELYKAQEDVVAACNEFGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLP  802 (1057)
Q Consensus       723 ~KDgG~laA~W~LyrAQ~~L~~va~~~gV~l~lFHGRGGSvGRGGGP~~~AIlsqP~gsv~g~iRiTEQGEvI~~kyg~~  802 (1057)
                      ||||||++|+|+||+||++|+++++++||+++|||||||||||||||+|+||+|||+||++|+||+|||||||++|||++
T Consensus       571 ~KDgG~laa~W~ly~Aq~~L~~v~~~~gv~l~~FHGRGGsvgRGGGPt~~ai~sqP~gs~~g~ir~TeQGEvIs~ky~~~  650 (936)
T d1jqoa_         571 GKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEE  650 (936)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCSSGGGTCCCHHHHHHTSCTTSCTTEEEEEEEHHHHHHHHSSH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEEEEHHHHCCCH
T ss_conf             42257888888999999999999998396389970678865567897688998588988577458875210146521688


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCC
Q ss_conf             99999999999999982179999999179999999999999999532211696507889840805676128988888855
Q 001539          803 QTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRR  882 (1057)
Q Consensus       803 ~lA~r~Le~~~~A~L~as~~~~~~~~~~~w~~~md~la~~S~~~YR~lv~~~p~F~~yF~~aTPi~eI~~LnIGSRPakR  882 (1057)
                      .+|.||||++++|++++++.++..+. ++|+++|++||+.|+++||++|+++|+|++||+++||++||+.|||||||+||
T Consensus       651 ~~a~~~Le~~~aa~l~~~~~~~~~~~-~~~~~~~~~ls~~s~~~Yr~lv~~~p~F~~yf~~aTPi~ei~~lnIGSRPa~R  729 (936)
T d1jqoa_         651 HLCFQTLQRFTAATLEHGMHPPVSPK-PEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKR  729 (936)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCCCC-HHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHSCCGGGGGGCCSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             89999999999999960358877897-23789999999999999987562797389999987157777545688997547


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             79999875545520344410001222335145998775508--9989999998209129999999999998103999999
Q 001539          883 KSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDK--GNTEDLKAMYKEWPFFQSTIDLIEMVLGKADTHIAKR  960 (1057)
Q Consensus       883 ~~~~~iedLRAIPWVFaWtQ~R~~lP~WyGvGsAl~~~~~~--~~~~~L~~My~~wPfFrt~ldnvemaLaKaDl~Ia~~  960 (1057)
                      +++++++|||||||||||||+|+++|||||+|+|++.+++.  ++++.||+||++||||+++|||++|+|+|+||.||++
T Consensus       730 ~~~~~l~dLRAIPWVfsWtQ~R~~lPgWyG~GsAl~~~~~~~~~~~~~l~~my~~wpfF~~~l~n~~m~laK~d~~ia~~  809 (936)
T d1jqoa_         730 RPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGL  809 (936)
T ss_dssp             -----CTTCCSHHHHHHHHHTTCCHHHHTTHHHHHHHHHHHCTTHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_conf             78999655676723778988653226875157999999861745599999999709399999999999998318999999


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--------
Q ss_conf             984105635899999999999999999997709975435791489999820012021079999999987068--------
Q 001539          961 YDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQD-------- 1032 (1057)
Q Consensus       961 Y~~L~~d~~~~~i~~~i~~E~~~T~~~il~itg~~~Ll~~~p~l~~si~~RnpyvdpLn~lQvelLkr~R~~-------- 1032 (1057)
                      |+++++|++..+||.+|++||++|++++++|||++.||+++|++++||++|||||||||++|||||||+|+.        
T Consensus       810 Y~~l~~d~~~~~~~~~i~~E~~~t~~~~l~it~~~~Ll~~~p~l~~si~~R~py~~pL~~~Qv~lL~r~R~~~~~~~~~~  889 (936)
T d1jqoa_         810 YDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQP  889 (936)
T ss_dssp             HHHHTSCSTTHHHHHHHHHHHHHHHHHHHHHHTCSSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCCCCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99857887799999999999999999999981984142169689999998837888999999999999872333444432


Q ss_pred             ----------------------CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             ----------------------8855689999999999996203689
Q 001539         1033 ----------------------DDNHKLRDALLITINGIAAGMRNTG 1057 (1057)
Q Consensus      1033 ----------------------~~~~~l~~al~~TInGIAAGlrNTG 1057 (1057)
                                            +.++.+.++|++|||||||||||||
T Consensus       890 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~tingIAaGlrnTG  936 (936)
T d1jqoa_         890 PLSKEFADENKPAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG  936 (936)
T ss_dssp             CCSCC-------CTTTTTSSSCSSCTTHHHHHHHHHHHHHHHHTCCC
T ss_pred             CHHHHCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             00000000000123430365321135679999999999999815388

PyMOL of d1jqoa_

>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure