Citrus Sinensis ID: 001547

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------
Protein Sequence
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccEEccccccccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEcccccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHcccccccccEEEccccccEEEccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccEEcEEccccccccccccEEEccccEEEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEcccccccccccEEEccccccEEcccHHHHcccccccEEEcccccccccccHHHHHcccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccHHcccccccccccccccccccccccccccEEEEEEEEEcccEEEEccHHHcccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccHHHHcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHEEEHHEEEccHHHHHHHHHHHHHHcEEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEcccccccccHHHHHHHHHHHHHccccccccccccccEEEEEEcccccEEEEEEccccccccccccccHHHcccHcccEEEcccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEccccccccccccHHHccccccEEEEcccccccccccccHHHcccccccEEEccccccccccccHHHHHcccccEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHHccccccEEEcccccccccccccHHHHccccccEEEEcccccccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHccccccEEEcccccccccccHHHHccccccEEEEEccccccccccHHHccccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHcccccccEEEEccccccccccHHHHHHHHcccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccEEEEcccccccccccHHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHcccHHHHHcccccccccccccccccccccHHcccccEEEEEEccccccccccHHHHHHcEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHEHHHcccccccc
Coil and Loop (DISEMBL)
MFVLLLIIFgggwsegcldHERFALLRLkhfftdpydkgatdccqwegvecsnttGRVIGLYLSETYSGEYWylnaslftpfqqlesldlswnniagcaenegLERLSRLsklkkldlrgnlcnnsILSSVARLSSLTSLHLSHnilqgsidakefdslsnleeldindneidnvevsrgyrglrklksldlsgvgirdGNKLlqsmgsfpslntlhlesnnftaTLTTTQelhnftnleyltlddsSLHISLLQSIGsifpslknlsmsgcevngvlsgqgfphfksleHLDMRFARIALNTSFLQIIGEsmpslkylslsgstlgtnssrildqglcplahlqelyidnndlrgslpwclanttslrILDVSfnqltgsisssplvhltsieelrlsnnhfripvsleplfnhsklkifdaknneingeineshsltpkfqlkslslssnygdsvtfpkflyhqHELKEAELSHIKMIGefpnwllenntkLEFLYLVNdslagpfrlpihshkrlrfldvsnnnfqghipveigdilpSLVYFNIsmnaldgsipssfgnVIFLQFLDlsnnkltgeipdhLAMCCVNLEFLSlsnnslkghiFSRIFSLRNLRWLLLEgnhfvgeipqslskcsslkglylnnnnlsgkiprwlgnlkglqhivmpknhlegpipvefcrldslqildisdnnisgslpscfyplsikqVHLSKNmlhgqlkegtffncsslvtldlsynylngsipdwidgLSQLSHLNLAHNNLEGEVPIQLCRlnqlqlldlsdnnlhglipscfdnttlhesynnnsspdkpfktsfsisgpqgsvEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDlscnklvghippqignltRIQTLNlshnnltgtipltfsnlrhIESLDLSynklsgkiprqlvDLNTLAIFIVAYNnlsgkipewTAQFATfnkssydgnpflcglplpicrslatmseastsnegddnlidmdsFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVidnliptrfch
Flexible Loop (DISEMBL)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLeeldindneidnvevsrgyrglrklksldlsgvGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Low Complexity Region (SEG)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENeglerlsrlsklkkldlrgNLCNNSILSSVARlssltslhlshNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPslkylslsgstlgtnssRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVnleflslsnnslKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIqlcrlnqlqlldlsdnnlHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered region (IsUnstruct)
*FVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI******************LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL***************************EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLAT************NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Disordered Region (DISOPRED)
MFVLLLIIFGGGWS***LDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG****************************DSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Disordered Region (DISEMBL)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Disordered Region (DISPRO)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAS**NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFC*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFVLLLIIFGGGWSEGCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNLIPTRFCH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1056	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.833	0.704	0.289	8e-75
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.804	0.678	0.286	1e-68
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.650	0.623	0.319	2e-61
Q9LJF3	1164	Receptor-like protein kin	no	no	0.607	0.550	0.315	3e-61
Q9ZWC8	1166	Serine/threonine-protein	no	no	0.624	0.565	0.291	8e-61
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.504	0.466	0.330	9e-61
Q9C9H7	847	Receptor-like protein 12	no	no	0.620	0.773	0.303	2e-60
Q9FL28	1173	LRR receptor-like serine/	no	no	0.538	0.485	0.318	4e-60
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.575	0.503	0.302	2e-59
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.575	0.503	0.300	2e-59

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  282 bits (722), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 306/1057 (28%), Positives = 474/1057 (44%), Gaps = 177/1057 (16%)

Query: 9    FGGGWSEGCLDHERFALLRLKHFFT------DPYDKGATD---CCQWEGVECSNTT-GRV 58
            F G    G ++++   LL +K          DP  +  +D    C W GV C NT   RV
Sbjct: 14   FSGLGQPGIINNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDNTGLFRV 73

Query: 59   IGLYLSE---TYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKK 115
            I L L+    T S   W      F  F  L  LDLS NN+ G                  
Sbjct: 74   IALNLTGLGLTGSISPW------FGRFDNLIHLDLSSNNLVG------------------ 109

Query: 116  LDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 175
                       I ++++ L+SL SL L  N L G I + +  SL N+  L I DNE+   
Sbjct: 110  ----------PIPTALSNLTSLESLFLFSNQLTGEIPS-QLGSLVNIRSLRIGDNEL--- 155

Query: 176  EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHN 235
                               VG      + +++G+  +L  L L S   T  + +  +L  
Sbjct: 156  -------------------VG-----DIPETLGNLVNLQMLALASCRLTGPIPS--QLGR 189

Query: 236  FTNLEYLTLDDSSLHISLLQSIG-----SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 290
               ++ L L D+ L   +   +G     ++F + +N+      +NG +  +       LE
Sbjct: 190  LVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENM------LNGTIPAE----LGRLE 239

Query: 291  HLD-MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
            +L+ +  A  +L       +GE M  L+YLSL  + L      ++ + L  L +LQ L +
Sbjct: 240  NLEILNLANNSLTGEIPSQLGE-MSQLQYLSLMANQL----QGLIPKSLADLGNLQTLDL 294

Query: 350  DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPV 407
              N+L G +P    N + L  L ++ N L+GS+  S   + T++E+L LS       IPV
Sbjct: 295  SANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPV 354

Query: 408  SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 467
             L        LK  D  NN + G I E  +L    +L  L L +N  +    P  + +  
Sbjct: 355  ELSKC---QSLKQLDLSNNSLAGSIPE--ALFELVELTDLYLHNNTLEGTLSPS-ISNLT 408

Query: 468  ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNN 527
             L+   L H  + G+ P   +    KLE L+L  +  +G     I +   L+ +D+  N+
Sbjct: 409  NLQWLVLYHNNLEGKLPKE-ISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNH 467

Query: 528  FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 587
            F+G IP  IG  L  L   ++  N L G +P+S GN   L  LDL++N+L+G IP     
Sbjct: 468  FEGEIPPSIGR-LKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGF 526

Query: 588  CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 647
                LE L L NNSL+G++   + SLRNL  + L  N   G I   L   SS     + N
Sbjct: 527  -LKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSYLSFDVTN 584

Query: 648  NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 707
            N    +IP  LGN + L  + + KN L G IP    ++  L +LD+S N ++G++P    
Sbjct: 585  NGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIP---- 640

Query: 708  PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 767
                 Q+ L K + H                +DL+ N+L+G IP W+  LSQL  L L+ 
Sbjct: 641  ----LQLVLCKKLTH----------------IDLNNNFLSGPIPPWLGKLSQLGELKLSS 680

Query: 768  NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 827
            N     +P +L    +L +L L  N+L+G IP    N       N +       K  FS 
Sbjct: 681  NQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLD-------KNQFSG 733

Query: 828  SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 887
            S PQ     K+ +++E                    L LS N L G IP +IG L  +Q+
Sbjct: 734  SLPQAM--GKLSKLYE--------------------LRLSRNSLTGEIPVEIGQLQDLQS 771

Query: 888  -LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 946
             L+LS+NN TG IP T   L  +E+LDLS+N+L+G++P  + D+ +L    V++NNL GK
Sbjct: 772  ALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGK 831

Query: 947  IPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFT 1006
            + +   QF+ +   S+ GN  LCG PL  C  +     ++   +G    +   S  I   
Sbjct: 832  LKK---QFSRWPADSFLGNTGLCGSPLSRCNRV----RSNNKQQG----LSARSVVIISA 880

Query: 1007 ISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYY 1043
            IS +  I  +++V+ +  ++++R  +  ++   S  Y
Sbjct: 881  ISALTAIGLMILVIAL--FFKQRHDFFKKVGHGSTAY 915

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  262 bits (670), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 289/1007 (28%), Positives = 449/1007 (44%), Gaps = 157/1007 (15%)

Query: 24   ALLRLKH-FFTDP--------YDKGATDCCQWEGVECSNTTGR-VIGLYLSETYSGEYWY 73
             LL LK+ F T+P        ++ G+   C W GV C    GR +IGL LS    G    
Sbjct: 32   TLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCG---GREIIGLNLSGL--GLTGS 86

Query: 74   LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
            ++ S+   F  L  +DLS N + G                               +    
Sbjct: 87   ISPSI-GRFNNLIHIDLSSNRLVGPIPT---------------------------TLSNL 118

Query: 134  LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
             SSL SLHL  N+L G I + +  SL NL+ L + DNE++                    
Sbjct: 119  SSSLESLHLFSNLLSGDIPS-QLGSLVNLKSLKLGDNELNGT------------------ 159

Query: 194  GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 253
                     + ++ G+  +L  L L S   T  + +         L+ L L D+ L   +
Sbjct: 160  ---------IPETFGNLVNLQMLALASCRLTGLIPS--RFGRLVQLQTLILQDNELEGPI 208

Query: 254  LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 313
               IG+   SL   + +   +NG L  +     K+L+ L++     + +      +G+ +
Sbjct: 209  PAEIGNC-TSLALFAAAFNRLNGSLPAE-LNRLKNLQTLNL--GDNSFSGEIPSQLGD-L 263

Query: 314  PSLKYLSLSGSTLGTNSSRILDQGLCP-----LAHLQELYIDNNDLRGSLPWCLANTTSL 368
             S++YL+L G+ L         QGL P     LA+LQ L + +N+L G +         L
Sbjct: 264  VSIQYLNLIGNQL---------QGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQL 314

Query: 369  RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 428
              L ++ N+L+GS+  +   + TS+++L LS       +  E + N   LK+ D  NN +
Sbjct: 315  EFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAE-ISNCQSLKLLDLSNNTL 373

Query: 429  NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 488
             G+I +S  L    +L +L L++N  +  T    + +   L+E  L H  + G+ P  + 
Sbjct: 374  TGQIPDS--LFQLVELTNLYLNNNSLEG-TLSSSISNLTNLQEFTLYHNNLEGKVPKEI- 429

Query: 489  ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 548
                KLE +YL  +  +G   + I +  RL+ +D   N   G IP  IG  L  L   ++
Sbjct: 430  GFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR-LKDLTRLHL 488

Query: 549  SMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS 608
              N L G+IP+S GN   +  +DL++N+L+G IP         LE   + NNSL+G++  
Sbjct: 489  RENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA-LELFMIYNNSLQGNLPD 547

Query: 609  RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
             + +L+NL  +    N F G I   L   SS     +  N   G IP  LG    L  + 
Sbjct: 548  SLINLKNLTRINFSSNKFNGSI-SPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLR 606

Query: 669  MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 728
            + KN   G IP  F ++  L +LDIS N++SG +P          V L            
Sbjct: 607  LGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIP----------VELGL---------- 646

Query: 729  TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 788
                C  L  +DL+ NYL+G IP W+  L  L  L L+ N   G +P ++  L  +  L 
Sbjct: 647  ----CKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLF 702

Query: 789  LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 848
            L  N+L+G IP    N     + N   +          +SGP  S   K+ ++FE     
Sbjct: 703  LDGNSLNGSIPQEIGNLQALNALNLEEN---------QLSGPLPSTIGKLSKLFE----- 748

Query: 849  IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT-LNLSHNNLTGTIPLTFSNLR 907
                           L LS N L G IP +IG L  +Q+ L+LS+NN TG IP T S L 
Sbjct: 749  ---------------LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLP 793

Query: 908  HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPF 967
             +ESLDLS+N+L G++P Q+ D+ +L    ++YNNL GK+ +   QF+ +   ++ GN  
Sbjct: 794  KLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKK---QFSRWQADAFVGNAG 850

Query: 968  LCGLPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIF 1014
            LCG PL  C    + ++ S S +    +  + S      +  VI++F
Sbjct: 851  LCGSPLSHCNRAGSKNQRSLSPKTVVIISAISSLAAIALMVLVIILF 897

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 236/738 (31%), Positives = 346/738 (46%), Gaps = 51/738 (6%)

Query: 327  GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 386
            G N S  L   +C L  L++L +  N + G +P  L+   SL +LD+  N+  G I    
Sbjct: 76   GMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQ- 134

Query: 387  LVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 444
            L  + ++++L L  N+    IP  +  L +  +L I+   +N + G I    S+    QL
Sbjct: 135  LTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIY---SNNLTGVI--PPSMAKLRQL 189

Query: 445  KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 504
            + +    N G S   P  +     LK   L+   + G  P  L E    L  L L  + L
Sbjct: 190  RIIRAGRN-GFSGVIPSEISGCESLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRL 247

Query: 505  AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 564
            +G     + +  RL  L +  N F G IP EIG  L  +    +  N L G IP   GN+
Sbjct: 248  SGEIPPSVGNISRLEVLALHENYFTGSIPREIGK-LTKMKRLYLYTNQLTGEIPREIGNL 306

Query: 565  IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 624
            I    +D S N+LTG IP       +NL+ L L  N L G I   +  L  L  L L  N
Sbjct: 307  IDAAEIDFSENQLTGFIPKEFGHI-LNLKLLHLFENILLGPIPRELGELTLLEKLDLSIN 365

Query: 625  HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
               G IPQ L     L  L L +N L GKIP  +G       + M  N L GPIP  FCR
Sbjct: 366  RLNGTIPQELQFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCR 425

Query: 685  LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
              +L +L +  N +SG++P       S+ ++ L  N L G L     FN  +L  L+L  
Sbjct: 426  FQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPI-ELFNLQNLTALELHQ 484

Query: 744  NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP---- 799
            N+L+G+I   +  L  L  L LA+NN  GE+P ++  L ++   ++S N L G IP    
Sbjct: 485  NWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELG 544

Query: 800  SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT----TKNIAYAYQG 855
            SC     L  S N         K S  I+   G +    LEI   +    T  I +++  
Sbjct: 545  SCVTIQRLDLSGN---------KFSGYIAQELGQL--VYLEILRLSDNRLTGEIPHSFGD 593

Query: 856  RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDL 914
              L+ L  L L  N L  +IP ++G LT +Q +LN+SHNNL+GTIP +  NL+ +E L L
Sbjct: 594  --LTRLMELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYL 651

Query: 915  SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 974
            + NKLSG+IP  + +L +L I  ++ NNL G +P+ TA F   + S++ GN  LC     
Sbjct: 652  NDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPD-TAVFQRMDSSNFAGNHGLCNSQRS 710

Query: 975  ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYW--RRRWLY 1032
             C+ L   S++       + LI+        TI+  IVI  + ++ ++   W  +RR   
Sbjct: 711  HCQPLVPHSDSKL-----NWLINGSQRQKILTIT-CIVIGSVFLITFLGLCWTIKRREPA 764

Query: 1033 LVEMW------ITSCYYF 1044
             V +       +   YYF
Sbjct: 765  FVALEDQTKPDVMDSYYF 782

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score =  237 bits (605), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 219/694 (31%), Positives = 325/694 (46%), Gaps = 53/694 (7%)

Query: 365  TTSLRILDVSF--NQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKI 420
            +T L ++ V+F  N+L G + SSP      I  + LSNN F   IP +    F +S LK 
Sbjct: 147  STCLNLVSVNFSHNKLAGKLKSSPSASNKRITTVDLSNNRFSDEIPETFIADFPNS-LKH 205

Query: 421  FDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 479
             D   N + G+ +  S  L     + SLS +S  GD   FP  L +   L+   LS   +
Sbjct: 206  LDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDR--FPVSLSNCKLLETLNLSRNSL 263

Query: 480  IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
            IG+ P                 D   G F       + LR L +++N + G IP E+  +
Sbjct: 264  IGKIPG----------------DDYWGNF-------QNLRQLSLAHNLYSGEIPPELSLL 300

Query: 540  LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
              +L   ++S N+L G +P SF +   LQ L+L NNKL+G+    +      +  L L  
Sbjct: 301  CRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPF 360

Query: 600  NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNLSGKIPR 656
            N++ G +   + +  NLR L L  N F GE+P    SL   S L+ L + NN LSG +P 
Sbjct: 361  NNISGSVPISLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPV 420

Query: 657  WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQV 714
             LG  K L+ I +  N L G IP E   L  L  L +  NN++G +P   C    +++ +
Sbjct: 421  ELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETL 480

Query: 715  HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 774
             L+ N+L G L E +   C++++ + LS N L G IP  I  L +L+ L L +N+L G +
Sbjct: 481  ILNNNLLTGSLPE-SISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNI 539

Query: 775  PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQ 831
            P +L     L  LDL+ NNL G +P    +        + S     F   +      G  
Sbjct: 540  PSELGNCKNLIWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAG 599

Query: 832  GSVE-----KKILEIFEFT-TKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQI 879
            G VE      + LE F    +      Y G  + + +       LDLS N + G IP   
Sbjct: 600  GLVEFEGIRAERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGY 659

Query: 880  GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939
            G +  +Q LNL HN LTGTIP +F  L+ I  LDLS+N L G +P  L  L+ L+   V+
Sbjct: 660  GAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVS 719

Query: 940  YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLIDMD 999
             NNL+G IP +  Q  TF  + Y  N  LCG+PLP C S +  + +    +       M 
Sbjct: 720  NNNLTGPIP-FGGQLTTFPLTRYANNSGLCGVPLPPCSSGSRPTRSHAHPKKQSIATGMS 778

Query: 1000 SFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 1033
            +  +   +  V++I  +     V    ++R  Y+
Sbjct: 779  AGIVFSFMCIVMLIMALYRARKVQKKEKQREKYI 812

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1

 Score =  236 bits (602), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 210/720 (29%), Positives = 338/720 (46%), Gaps = 61/720 (8%)

Query: 343  HLQELYIDNNDLR--GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
            +LQ L + +N +     + +  +  ++L  +++S N+L G +  +P   L S+  + LS 
Sbjct: 126  YLQVLDLSSNSISDYSMVDYVFSKCSNLVSVNISNNKLVGKLGFAP-SSLQSLTTVDLSY 184

Query: 401  NHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINE-SHSLTPKFQLKSLSLSSNYGDSV 457
            N    +IP S    F  S LK  D  +N ++G+ ++ S  +       SLS ++  GD  
Sbjct: 185  NILSDKIPESFISDFPAS-LKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDK- 242

Query: 458  TFPKFLYHQHELKEAELSHIKMIGEFPN---WLLENNTKLEFLYLVNDSLAGPFRLPIHS 514
             FP  L +   L+   +S   + G+ PN   W                           S
Sbjct: 243  -FPITLPNCKFLETLNISRNNLAGKIPNGEYW--------------------------GS 275

Query: 515  HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 574
             + L+ L +++N   G IP E+  +  +LV  ++S N   G +PS F   ++LQ L+L N
Sbjct: 276  FQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGN 335

Query: 575  NKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-- 632
            N L+G+  + +      + +L ++ N++ G +   + +  NLR L L  N F G +P   
Sbjct: 336  NYLSGDFLNTVVSKITGITYLYVAYNNISGSVPISLTNCSNLRVLDLSSNGFTGNVPSGF 395

Query: 633  -SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 691
             SL     L+ + + NN LSG +P  LG  K L+ I +  N L GPIP E   L +L  L
Sbjct: 396  CSLQSSPVLEKILIANNYLSGTVPMELGKCKSLKTIDLSFNELTGPIPKEIWMLPNLSDL 455

Query: 692  DISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
             +  NN++G++P   C    +++ + L+ N+L G + E +   C++++ + LS N L G 
Sbjct: 456  VMWANNLTGTIPEGVCVKGGNLETLILNNNLLTGSIPE-SISRCTNMIWISLSSNRLTGK 514

Query: 750  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 809
            IP  I  LS+L+ L L +N+L G VP QL     L  LDL+ NNL G +P    +     
Sbjct: 515  IPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSLIWLDLNSNNLTGDLPGELASQAGLV 574

Query: 810  SYNNNSSPDKPF---KTSFSISGPQGSVEKKILEIFEFTTKNIAYA------YQGRVLSL 860
               + S     F   +      G  G VE + +         + ++      Y G  +  
Sbjct: 575  MPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRAERLERLPMVHSCPATRIYSGMTMYT 634

Query: 861  LAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 914
             +        D+S N + G IPP  GN+  +Q LNL HN +TGTIP +F  L+ I  LDL
Sbjct: 635  FSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLNLGHNRITGTIPDSFGGLKAIGVLDL 694

Query: 915  SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 974
            S+N L G +P  L  L+ L+   V+ NNL+G IP +  Q  TF  S Y  N  LCG+PL 
Sbjct: 695  SHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIP-FGGQLTTFPVSRYANNSGLCGVPLR 753

Query: 975  ICRSLATMSEASTSNEGDDNLIDMDSFFITFT-ISYVIVIFGIVVVLYVNPYWRRRWLYL 1033
             C S       S  +     +       I F+ + +V+++  +  V  V    ++R  Y+
Sbjct: 754  PCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMCFVMLVMALYRVRKVQKKEQKREKYI 813

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  236 bits (601), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 272/557 (48%), Gaps = 24/557 (4%)

Query: 488  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
            L N T L+ L L  ++  G         K L+ LD+S+N   G IP EIGD   SL    
Sbjct: 224  LINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTGWIPPEIGDTCRSLQNLR 283

Query: 548  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
            +S N   G IP S  +  +LQ LDLSNN ++G  P+ +     +L+ L LSNN + G   
Sbjct: 284  LSYNNFTGVIPESLSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFP 343

Query: 608  SRIFSLRNLRWLLLEGNHFVGEIPQSLSK-CSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
            + I + ++LR      N F G IP  L    +SL+ L L +N ++G+IP  +     L+ 
Sbjct: 344  TSISACKSLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRT 403

Query: 667  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQL 725
            I +  N+L G IP E   L  L+      NNI+G +P     L ++K + L+ N L G++
Sbjct: 404  IDLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEI 463

Query: 726  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 785
                FFNCS++  +  + N L G +P     LS+L+ L L +NN  GE+P +L +   L 
Sbjct: 464  PP-EFFNCSNIEWVSFTSNRLTGEVPKDFGILSRLAVLQLGNNNFTGEIPPELGKCTTLV 522

Query: 786  LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF---KTSFSISGPQGSVE------K 836
             LDL+ N+L G IP         ++ +   S +          S  G  G VE      +
Sbjct: 523  WLDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPE 582

Query: 837  KILEIFEFTTKNIAYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNL 890
            ++L+I    + +    Y G +LSL         LDLS N+L G IP +IG +  +Q L L
Sbjct: 583  RLLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLEL 642

Query: 891  SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 950
            SHN L+G IP T   L+++   D S N+L G+IP    +L+ L    ++ N L+G IP+ 
Sbjct: 643  SHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQ- 701

Query: 951  TAQFATFNKSSYDGNPFLCGLPLPICRS-----LATMSEASTSNEGDDNLIDMDSFFITF 1005
              Q +T   + Y  NP LCG+PLP C++      A   E   +  G       +S  +  
Sbjct: 702  RGQLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGV 761

Query: 1006 TISYVIVIFGIVVVLYV 1022
             IS   V   IV  + V
Sbjct: 762  LISAASVCILIVWAIAV 778

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  235 bits (599), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 229/755 (30%), Positives = 357/755 (47%), Gaps = 100/755 (13%)

Query: 326  LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 385
            L TNSS      L  L +L+ L + N +L G +P  L N + L ++++ FN+  G I +S
Sbjct: 100  LKTNSS------LFKLQYLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPAS 153

Query: 386  PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 443
             + +L  +  L L+NN     IP SL  L     L++F   +N + G+I +S  +    Q
Sbjct: 154  -IGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELF---SNRLVGKIPDS--IGDLKQ 207

Query: 444  LKSLSLSSN--YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 501
            L++LSL+SN   G+    P  L +   L    L+H +++GE P   + N  +L  +   N
Sbjct: 208  LRNLSLASNNLIGE---IPSSLGNLSNLVHLVLTHNQLVGEVPA-SIGNLIELRVMSFEN 263

Query: 502  DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 561
            +SL+G   +   +  +L    +S+NNF    P ++  I  +L YF++S N+  G  P S 
Sbjct: 264  NSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMS-IFHNLEYFDVSYNSFSGPFPKSL 322

Query: 562  GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621
              +  L+ + L  N+ TG I          L+ L L  N L G I   I  L NL  L +
Sbjct: 323  LLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDI 382

Query: 622  EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR--WLGNLKGLQH------------- 666
              N+F G IP ++SK  +L  L L+ NNL G++P   W  N   L H             
Sbjct: 383  SHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEE 442

Query: 667  -----IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF--YPLSIKQVHLSKN 719
                 + +  N  +GPIP   C+L SL  LD+S+N  SGS+PSC   +  SIK+++L  N
Sbjct: 443  ALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDN 502

Query: 720  MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD------------------------WID 755
               G L +  F   + LV+LD+S+N L G  P                         W++
Sbjct: 503  NFSGTLPD-IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLE 561

Query: 756  GLSQLSHLNLAHNNLEGEVPIQLCRL--NQLQLLDLSDNNLHGLIPSCF-----DNTTLH 808
             L  L  LNL  N   G +  +   +    L+++D+S NN  G +P  +     D TTL 
Sbjct: 562  SLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLT 621

Query: 809  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 868
            E  +   +    +  S+                 E   K +  +++ R+      +D S 
Sbjct: 622  EEMDQYMTEFWRYADSY-------------YHEMEMVNKGVDMSFE-RIRRDFRAIDFSG 667

Query: 869  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 928
            NK+ G+IP  +G L  ++ LNLS N  T  IP   +NL  +E+LD+S NKLSG+IP+ L 
Sbjct: 668  NKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLA 727

Query: 929  DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEAST- 987
             L+ L+    ++N L G +P  T QF     SS+  NP L GL   ICR    ++  S  
Sbjct: 728  ALSFLSYMNFSHNLLQGPVPRGT-QFQRQKCSSFLDNPGLYGLE-DICRDTGALNPTSQL 785

Query: 988  ---SNEGDDNLIDMDSFFITFTISYVI-VIFGIVV 1018
                +E ++N+ +    ++   I+Y   V+ G+V+
Sbjct: 786  PEDLSEAEENMFN----WVAAAIAYGPGVLCGLVI 816

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  234 bits (596), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 214/671 (31%), Positives = 314/671 (46%), Gaps = 102/671 (15%)

Query: 338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
           L  L HLQ      N L GS+P  +    +L  LD+S NQLTG I      +L +++ L 
Sbjct: 188 LGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRD-FGNLLNLQSLV 246

Query: 398 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 457
           L+ N     +  E + N S L   +  +N++ G+I     L    QL++L +  N   S 
Sbjct: 247 LTENLLEGDIPAE-IGNCSSLVQLELYDNQLTGKI--PAELGNLVQLQALRIYKNKLTS- 302

Query: 458 TFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGPFRLPIHSH 515
           + P  L+   +L    LS   ++G     +  LE+   LE L L +++  G F   I + 
Sbjct: 303 SIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLES---LEVLTLHSNNFTGEFPQSITNL 359

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
           + L  L V  NN  G +P ++G +L +L   +   N L G IPSS  N   L+ LDLS+N
Sbjct: 360 RNLTVLTVGFNNISGELPADLG-LLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHN 418

Query: 576 KLTGEIPDHLAMC----------------------CVNLEFLSLSNNSLKGHIFSRIFSL 613
           ++TGEIP                            C NLE LS+++N+L G +   I  L
Sbjct: 419 QMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKL 478

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
           + LR L +  N   G IP+ +     L  LYL++N  +G+IPR + NL  LQ + M  N 
Sbjct: 479 QKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSND 538

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFN 732
           LEGPIP E   +  L +LD+S+N  SG +P+ F  L S+  + L  N  +G +   +  +
Sbjct: 539 LEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIP-ASLKS 597

Query: 733 CSSLVTLDLSYNYLNGSIP-DWIDGLSQLS-HLNLAHNNLEGEVPIQLCRLNQLQLLDLS 790
            S L T D+S N L G+IP + +  L  +  +LN ++N L G +P +L +L  +Q +DLS
Sbjct: 598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 791 DNNLHGLIP----SCFDNTTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEF 844
           +N   G IP    +C +  TL  S NN S   PD+ F                       
Sbjct: 658 NNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVF----------------------- 694

Query: 845 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 904
                    QG  + ++  L+LS N   G IP   GN+T + +L+LS NNLTG IP + +
Sbjct: 695 ---------QG--MDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLA 743

Query: 905 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 964
           NL  ++ L L                        A NNL G +PE +  F   N S   G
Sbjct: 744 NLSTLKHLKL------------------------ASNNLKGHVPE-SGVFKNINASDLMG 778

Query: 965 NPFLCGLPLPI 975
           N  LCG   P+
Sbjct: 779 NTDLCGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score =  231 bits (590), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 217/718 (30%), Positives = 335/718 (46%), Gaps = 110/718 (15%)

Query: 418  LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 477
            L   D   N I+G I++  S      LKSL+LS N+ D             L+  +LS+ 
Sbjct: 136  LDSIDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKAATFSLQVLDLSYN 195

Query: 478  KMIG--EFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 534
             + G   FP W+      +LEF  L  + LAG   +P    K L +LD+S NNF    P 
Sbjct: 196  NISGFNLFP-WVSSMGFVELEFFSLKGNKLAG--SIPELDFKNLSYLDLSANNFSTVFP- 251

Query: 535  EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 594
               D   +L + ++S N   G I SS  +   L FL+L+NN+  G +P    +   +L++
Sbjct: 252  SFKDC-SNLQHLDLSSNKFYGDIGSSLSSCGKLSFLNLTNNQFVGLVPK---LPSESLQY 307

Query: 595  LSLSNNSLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 653
            L L  N  +G   +++  L + +  L L  N+F G +P+SL +CSSL+ + ++ NN SGK
Sbjct: 308  LYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISYNNFSGK 367

Query: 654  IP-RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLS 710
            +P   L  L  ++ +V+  N   G +P  F  L  L+ LD+S NN++G +PS  C  P++
Sbjct: 368  LPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVIPSGICKDPMN 427

Query: 711  -IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL------ 763
             +K ++L  N+  G + + +  NCS LV+LDLS+NYL GSIP  +  LS+L  L      
Sbjct: 428  NLKVLYLQNNLFKGPIPD-SLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQ 486

Query: 764  ------------------------------------------NLAHNNLEGEVPIQLCRL 781
                                                      +L++N L GE+P  L RL
Sbjct: 487  LSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRL 546

Query: 782  NQLQLLDLSDNNLHGLIPSCFDNTT------LHESYNNNSSPDKPFKTSFSIS-----GP 830
            + L +L L +N++ G IP+   N        L+ ++ N S P   FK S +I+     G 
Sbjct: 547  SNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGK 606

Query: 831  Q---------------------GSVEKKILEIFEFTTK---NIAYAYQGRVLSL------ 860
            +                     G + ++ L+    +T+   N    Y+G           
Sbjct: 607  RYVYIKNDGSKECHGAGNLLEFGGIRQEQLD--RISTRHPCNFTRVYRGITQPTFNHNGS 664

Query: 861  LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
            +  LDLS NKL G IP ++G +  +  LNL HN+L+G IP     L+++  LDLSYN+ +
Sbjct: 665  MIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFN 724

Query: 921  GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA 980
            G IP  L  L  L    ++ NNLSG IPE +A F TF    +  N  LCG PLPI  S  
Sbjct: 725  GTIPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPIPCSSG 782

Query: 981  TMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 1038
              S+A+   +       +        +  +  IFG+++V       RR+    +E ++
Sbjct: 783  PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score =  231 bits (589), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 216/718 (30%), Positives = 336/718 (46%), Gaps = 110/718 (15%)

Query: 418  LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 477
            L   D   N I+G I++  S      LKSL+LS N+ D             L+  +LS+ 
Sbjct: 136  LDSIDLAENTISGPISDISSFGVCSNLKSLNLSKNFLDPPGKEMLKGATFSLQVLDLSYN 195

Query: 478  KMIG--EFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 534
             + G   FP W+      +LEF  +  + LAG   +P    K L +LD+S NNF    P 
Sbjct: 196  NISGFNLFP-WVSSMGFVELEFFSIKGNKLAG--SIPELDFKNLSYLDLSANNFSTVFP- 251

Query: 535  EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 594
               D   +L + ++S N   G I SS  +   L FL+L+NN+  G +P    +   +L++
Sbjct: 252  SFKDC-SNLQHLDLSSNKFYGDIGSSLSSCGKLSFLNLTNNQFVGLVP---KLPSESLQY 307

Query: 595  LSLSNNSLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 653
            L L  N  +G   +++  L + +  L L  N+F G +P+SL +CSSL+ + ++NNN SGK
Sbjct: 308  LYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNFSGK 367

Query: 654  IP-RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLS 710
            +P   L  L  ++ +V+  N   G +P  F  L  L+ LD+S NN++G +PS  C  P++
Sbjct: 368  LPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKDPMN 427

Query: 711  -IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL------ 763
             +K ++L  N+  G + + +  NCS LV+LDLS+NYL GSIP  +  LS+L  L      
Sbjct: 428  NLKVLYLQNNLFKGPIPD-SLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQ 486

Query: 764  ------------------------------------------NLAHNNLEGEVPIQLCRL 781
                                                      +L++N L GE+P  L RL
Sbjct: 487  LSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGRL 546

Query: 782  NQLQLLDLSDNNLHGLIPSCFDNTT------LHESYNNNSSPDKPFKTSFSIS-----GP 830
            + L +L L +N++ G IP+   N        L+ ++ N S P   FK S +I+     G 
Sbjct: 547  SNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPPLFKQSGNIAVALLTGK 606

Query: 831  Q---------------------GSVEKKILEIFEFTTK---NIAYAYQGRVLSL------ 860
            +                     G + ++ L+    +T+   N    Y+G           
Sbjct: 607  RYVYIKNDGSKECHGAGNLLEFGGIRQEQLD--RISTRHPCNFTRVYRGITQPTFNHNGS 664

Query: 861  LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
            +  LDLS NKL G IP ++G +  +  LNL HN+L+G IP     L+++  LDLSYN+ +
Sbjct: 665  MIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAILDLSYNRFN 724

Query: 921  GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA 980
            G IP  L  L  L    ++ NNLSG IPE +A F TF    +  N  LCG PLP+  S  
Sbjct: 725  GTIPNSLTSLTLLGEIDLSNNNLSGMIPE-SAPFDTFPDYRFANNS-LCGYPLPLPCSSG 782

Query: 981  TMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 1038
              S+A+   +       +        +  +  IFG+++V       RR+    +E ++
Sbjct: 783  PKSDANQHQKSHRRQASLAGSVAMGLLFSLFCIFGLIIVAIETKKRRRKKEAALEAYM 840

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1056
255581263	912	serine-threonine protein kinase, plant-t	0.701	0.812	0.509	0.0
359476165	1464	PREDICTED: LRR receptor-like serine/thre	0.910	0.656	0.413	0.0
224123984	1016	predicted protein [Populus trichocarpa]	0.894	0.930	0.412	0.0
224142481	781	predicted protein [Populus trichocarpa]	0.714	0.965	0.469	1e-179
224073422	969	predicted protein [Populus trichocarpa]	0.875	0.953	0.405	1e-179
224073436	1014	predicted protein [Populus trichocarpa]	0.866	0.902	0.420	1e-177
224098008	1097	predicted protein [Populus trichocarpa]	0.832	0.801	0.428	1e-176
224124658	1228	predicted protein [Populus trichocarpa]	0.902	0.776	0.413	1e-176
359482749	1067	PREDICTED: leucine-rich repeat receptor	0.942	0.932	0.379	1e-173
224134891	953	predicted protein [Populus trichocarpa]	0.737	0.817	0.444	1e-170

>gi|255581263|ref|XP_002531443.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223528936|gb|EEF30930.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/766 (50%), Positives = 514/766 (67%), Gaps = 25/766 (3%)

Query: 278  LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 337
            +  Q  P+F++LE L +   +I L  SFLQ +G  M SLK LSLSG  L      +  QG
Sbjct: 168  IQAQDLPNFENLEELYLD--KIELENSFLQTVG-VMTSLKVLSLSGCGLTGALPNV--QG 222

Query: 338  LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
            LC L HL+ L + +N+  G LPWCL+N TSL++LD+S NQ  G IS+SPL  L S+ +L 
Sbjct: 223  LCELIHLRVLDVSSNEFHGILPWCLSNLTSLQLLDLSSNQFVGDISNSPLKILKSLVDLD 282

Query: 398  LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 457
            +SNNHF++P SL P FNHS LK    +NN I  E  E HS  P+FQL S+ + S YG   
Sbjct: 283  VSNNHFQVPFSLGPFFNHSNLKHIRGQNNAIYLEA-ELHS-APRFQLISI-IFSGYGICG 339

Query: 458  TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 517
            TFP FLYHQ+ L+  +LSH+ + GEFPNWLL NNT+LE L LVN+SL+G  +LP+H H  
Sbjct: 340  TFPNFLYHQNNLQFVDLSHLSLKGEFPNWLLTNNTRLEILDLVNNSLSGHLQLPLHPHVN 399

Query: 518  LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
            L  LD+SNN+   HIP+EIG  LP L   N+S N  DGSIPSSFGN+  L+ LDLSNN+L
Sbjct: 400  LLALDISNNHVHDHIPLEIGTFLPKLELLNMSSNGFDGSIPSSFGNMNSLRILDLSNNQL 459

Query: 578  TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 637
            +G IP+HLA  C +L  L LSNNSL+G +FS+ F+L NL WL L+ NHF G IP+SLSK 
Sbjct: 460  SGSIPEHLATGCFSLNTLILSNNSLQGQMFSKQFNLTNLWWLELDKNHFSGRIPKSLSK- 518

Query: 638  SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 697
            S+L  + L++N+LSG IP W+GNL  LQ++++  N L+GPIPVEFC+L  L++LD+++N+
Sbjct: 519  SALSIMDLSDNHLSGMIPGWIGNLSYLQNLILSNNRLKGPIPVEFCQLHYLEVLDLANNS 578

Query: 698  ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 757
            +SG LPSC  P SI  VHLS+NM+ G      F     LVTLDLS N + G IP  I G+
Sbjct: 579  VSGILPSCLSPSSIIHVHLSQNMIEGPWTNA-FSGSHFLVTLDLSSNRITGRIPTLIGGI 637

Query: 758  SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP 817
            + L  LNL  N  +GE+P Q+C L QL L+ L+DNNL G IPSC     L    +++ +P
Sbjct: 638  NALRILNLKSNRFDGEIPAQICGLYQLSLIVLADNNLSGSIPSC-----LQLDQSDSLAP 692

Query: 818  DKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 877
            D P   +        +     +    FTTK  +Y+YQG++LS ++G+D SCNKL G IPP
Sbjct: 693  DVPPVPN------PLNPYYLPVRPMYFTTKRRSYSYQGKILSYISGIDFSCNKLTGEIPP 746

Query: 878  QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 937
            ++GN + I +LNLS+N  TG IP TFSNL+ IESLDLSYN L+G IP QL++L  L+ F 
Sbjct: 747  EMGNHSAIYSLNLSYNRFTGPIPSTFSNLKQIESLDLSYNNLNGDIPSQLLELKFLSYFS 806

Query: 938  VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC---RSLATMSEASTSNEGDDN 994
            VA+NNL GK P+ T QFATF  SSY+GNP LCGLPLP     R  ++   AS  +E + N
Sbjct: 807  VAHNNLFGKTPKRTGQFATFEVSSYEGNPNLCGLPLPKSCTEREASSAPRASAMDE-ESN 865

Query: 995  LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1040
             +DM++F+ +F +SY  VI G+ +VLY+NP WRR W   V++ I+S
Sbjct: 866  FLDMNTFYGSFIVSYTFVIIGMFLVLYINPQWRRAWFDFVDICISS 911

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476165|ref|XP_002283141.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1056 (41%), Positives = 607/1056 (57%), Gaps = 95/1056 (8%)

Query: 18   LDHERFALLRLKHFFTDP-------YDKGATDCCQWEGVECSNTTGRVIGLYLSETY--S 68
            L  ER ALL LK  F  P       ++   +DCC WE VECSNTTGRV+ L+L+ T   S
Sbjct: 469  LYEERIALLELKAAFCSPDCSSLPSWEDEESDCCGWERVECSNTTGRVLKLFLNNTRESS 528

Query: 69   GEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSIL 128
             E  YLNASLF PF +L                            K L+L  N+      
Sbjct: 529  QEDLYLNASLFIPFVEL----------------------------KILNLSTNML----- 555

Query: 129  SSVARLSSLTSLHLSHNILQGSIDAKEFD-SLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
                             +  G  D  E    L+NLE LD+++N +D   ++         
Sbjct: 556  -----------------VTLGDDDGSERPFKLNNLELLDLSNNTLDISILAS--LTELSS 596

Query: 188  KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
                  G  I +G+  +Q + +  +L  L L  N+  + +TTT  L +   L  L L+ +
Sbjct: 597  LKSLSLGTNILEGS--IQELAALHNLEELDLSKNDLESFITTTG-LKSLRKLRVLHLETN 653

Query: 248  SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
              +IS L+S+G +   LK L + G ++ G ++ +   + ++LE LD+    I+  +S LQ
Sbjct: 654  DFNISTLKSLGRL-SLLKELYLGGNKLEGSVTLRELNNLRNLEVLDLSSTNIS--SSILQ 710

Query: 308  IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
            I+ E M SLK LSL  +  G N S+   QGLC L +LQEL + +N   GS+  CL N TS
Sbjct: 711  IV-EVMTSLKALSLRSN--GINGSQTALQGLCKLKNLQELDLSDNGFEGSVSPCLGNLTS 767

Query: 368  LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD--AKN 425
            LR LD+S N+ +G++ SS    L  +E L LS+N F+    +     HSKL++ D    N
Sbjct: 768  LRALDLSKNRFSGNLDSSLFAGLMKLEFLSLSHNVFQTFPPISSFAKHSKLEVLDLICGN 827

Query: 426  NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
            N +  E +E  +  P FQLK   LSS    + + P FL++QH+L+  +LS+  +  +FP 
Sbjct: 828  NTLLLE-SEDQTWVPSFQLKVFRLSSCILKTGSIPSFLHYQHDLRVVDLSNSSLEEDFPT 886

Query: 486  WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
            WL++NNT+LE L L N+SL G F LP   +     +D+SNN  QG +P  I   LP+L++
Sbjct: 887  WLMKNNTRLEELNLKNNSLTGYFHLPYRPNIFTSAIDISNNLLQGQMPSNISVSLPNLMF 946

Query: 546  FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 605
             N+S N+ +GSIPS FG +  L FLDLSNN  TG IP+ LAM C +LE+L LS N L G 
Sbjct: 947  LNVSRNSFEGSIPS-FGGMRKLLFLDLSNNLFTGGIPEDLAMGCPSLEYLILSKNDLHGQ 1005

Query: 606  IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
            +F R+ +L +LR L L+ NHF G+IP  LS  S L+ LY+++N++SGK+P W+GN+  L 
Sbjct: 1006 MFPRVSNLPSLRHLELDDNHFSGKIPD-LSNSSGLERLYVSHNSISGKLPGWIGNMSNLA 1064

Query: 666  HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 725
             +VMP N LEGPIPVEFC LD+L++LD+S+NN+SGSLPSCF P  +  VHL +N L G L
Sbjct: 1065 ALVMPNNSLEGPIPVEFCSLDALELLDLSNNNLSGSLPSCFSPSLLIHVHLQENHLTGPL 1124

Query: 726  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 785
             +  F     L TLD+  N L+G IPDWI   S LS L L  N+ +G++P QLC+L+++ 
Sbjct: 1125 TKA-FTRSMDLATLDIRNNNLSGGIPDWISMFSGLSILLLKGNHFQGKIPYQLCQLSKIT 1183

Query: 786  LLDLSDNNLHGLIPSCFDNTTLHESYNNNSS------PDKPFKT----SFSISGPQGSVE 835
            +LDLS N+L G IPSC +       + +         P   F +    S  I   Q +V 
Sbjct: 1184 ILDLSYNSLSGHIPSCLNKIQFRTGFRSGKFSIISYFPSPGFSSYLYHSQHIELSQVNVN 1243

Query: 836  KKILE----IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 891
               +     + EFTTKN    Y+G  L  + G+DLS NKL G IPP+IGNL+++  LNLS
Sbjct: 1244 SYPIAYDKAMAEFTTKNRTDFYKGNFLYSMTGIDLSSNKLTGAIPPEIGNLSQVHALNLS 1303

Query: 892  HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 951
            HN LTG IP  FS L+ IESLDLSYN L+G IP +L +L  LA+F VAYNNLSGKIPE T
Sbjct: 1304 HNILTGPIPAAFSGLKSIESLDLSYNNLTGTIPGELTELTNLAVFSVAYNNLSGKIPEMT 1363

Query: 952  AQFATFNKSSYDGNPFLCG-LPLPICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYV 1010
            AQF TF ++SY GNP+LCG L    C      +E     +G   L D D F+++F  SYV
Sbjct: 1364 AQFGTFLENSYVGNPYLCGSLLRKNCSRAEEEAEIEEGEKG---LTDRDIFYVSFGASYV 1420

Query: 1011 IVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1046
            +V+ G+  VLY+N  WR++W +++++ IT C  FV+
Sbjct: 1421 VVLLGVAAVLYINGGWRKKWFHVIDVLITCCCNFVM 1456

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123984|ref|XP_002330258.1| predicted protein [Populus trichocarpa] gi|222871714|gb|EEF08845.1| predicted protein [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1065 (41%), Positives = 585/1065 (54%), Gaps = 120/1065 (11%)

Query: 16   GCLDHERFALLRLKHFFTDPYDKGA-----------TDCCQWEGVECSNTTGRVIGLYL- 63
            GCL+ ER  LL +K        +G             +CC+W G+ C NTT RVI L L 
Sbjct: 27   GCLEDERIGLLEIKALIDPNSVQGELSDWMDNKEDIGNCCEWSGIVCDNTTRRVIQLSLM 86

Query: 64   -SETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRG-- 120
             +  +    W LNASLF PF++L+SLDL    + GC+ENEG   LS  SKL+KL + G  
Sbjct: 87   RARDFRLGDWVLNASLFLPFEELQSLDLGETGLVGCSENEGFGTLS--SKLRKLHVLGLS 144

Query: 121  --NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS 178
                 ++SILS    LSSL SL LS N L GS +    + LS                 S
Sbjct: 145  YNKFYSDSILSCFTGLSSLKSLDLSWNTLTGSANFYGLNVLS-----------------S 187

Query: 179  RGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN 238
            R    L+KL++L L G    D   +  S+  F SL +L L  N  T + +      N T 
Sbjct: 188  R----LKKLENLHLRGNQYND--SIFSSLTGFSSLKSLDLSYNMLTGSTSINGTFFNSTT 241

Query: 239  LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 298
            LE L LD SSL ++ L +IG + P+LK LS   C++NG L  QG    K+LE L      
Sbjct: 242  LEELYLDGSSLPLNFLHNIG-VLPALKVLSAGECDLNGTLPAQGLCGLKNLEQL------ 294

Query: 299  IALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSL 358
                      + E+       +L GS         L      L+ LQ L +  N   G  
Sbjct: 295  ---------FLSEN-------NLEGS---------LPDCFKNLSSLQLLDVSRNQFIG-- 327

Query: 359  PWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKL 418
                                  +I+SSPL +L S+E + LSNNHF++P+S++P  NHS L
Sbjct: 328  ----------------------NIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSL 365

Query: 419  KIFDAKNNEINGEINESHSLTPKFQLK--SLSLSSNYGDSVTFPKFLYHQHELKEAELSH 476
            + F + NN +  E    H L PKFQL   SLS SS+   +V  P FLY+QH+L+  +LS 
Sbjct: 366  RFFSSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSSSEALNVETPSFLYNQHDLRVLDLSQ 425

Query: 477  IKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEI 536
               IG FP+WLL+NNT+LE L+L  +S  G  +L  H +  +  +D+SNNN  G IP  I
Sbjct: 426  NSFIGMFPSWLLKNNTRLEQLFLNENSFFGTLQLQDHPNPDMTAIDISNNNMHGEIPKNI 485

Query: 537  GDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 596
              I  +L    ++ N L G IPS  GN   L  LDLSNN+L+    +      + L FL 
Sbjct: 486  CLIFSNLWTLRMAKNGLTGCIPSCLGNSSSLGVLDLSNNQLSMVELEQF----ITLTFLK 541

Query: 597  LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKIP 655
            LSNN+L G + + + +   L +L L  N+F G+I    S   ++   L L+NN  SG +P
Sbjct: 542  LSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIKTIWPVLDLSNNQFSGMLP 601

Query: 656  RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 715
            RW  NL  +  I + KNH  GPIPVEFC+LD L+ LD+SDNN+  S+PSCF P  I  VH
Sbjct: 602  RWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELKYLDLSDNNLFDSIPSCFNPPHITHVH 661

Query: 716  LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 775
            LSKN L G L  G F+N SSLVTLDL  N   GSI +WI  LS LS L L  NN +GE  
Sbjct: 662  LSKNRLSGPLTYG-FYNSSSLVTLDLRDNNFTGSISNWIGNLSSLSVLLLRANNFDGEFL 720

Query: 776  IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN---------NSSP-DKPFKTSF 825
            +QLC L QL +LD+S N L G +PSC  N +  ESY            S+P +K +    
Sbjct: 721  VQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFN 780

Query: 826  SISGPQGSVEKKIL--EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 883
                  GS    I   E+ EFT K++ Y Y+G++LS ++G+DLS NK  G IPP++GNL+
Sbjct: 781  QTRALLGSSYIPITTEEVIEFTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLS 840

Query: 884  RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 943
             +  LNLSHNNLTG+IP TFSNL+ IES DLSYN L G IP +L ++ TL +F VA+NNL
Sbjct: 841  ELLALNLSHNNLTGSIPATFSNLKQIESFDLSYNNLDGVIPHKLYEITTLEVFSVAHNNL 900

Query: 944  SGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMS-EASTSNEGDDNLIDMDSF 1001
            SG+ PE   QF TF++SSY+GNPFLCG PL   C    + S       + DD  IDM+ F
Sbjct: 901  SGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDKQEDDGFIDMNFF 960

Query: 1002 FITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1046
            +I+  + Y++V+ GI  VLY+NPYWR  W   ++  I +C+ F++
Sbjct: 961  YISLGVGYIVVVMGIAAVLYINPYWRCGWFNFIDYCIDTCFNFLL 1005

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142481|ref|XP_002324585.1| predicted protein [Populus trichocarpa] gi|222866019|gb|EEF03150.1| predicted protein [Populus trichocarpa]

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 380/810 (46%), Positives = 512/810 (63%), Gaps = 56/810 (6%)

Query: 264  LKNLSMSGCEVNGVLSGQGFPH---FKSLEHLDMRFARIALNT-SFLQIIGESMPSLKYL 319
            L  L + G E+    +  GF        LE L++ F +I  +T SFL    E + SLK+L
Sbjct: 2    LVELRLGGNEIQNFATSTGFERSLRLNKLEILELSFNKINDSTLSFL----EGLSSLKHL 57

Query: 320  SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 379
            +L  + L      I  +GLC L  LQEL I  NDL G LP CL N  +L++LD+SFN  +
Sbjct: 58   NLDNNQL---KGSIDMKGLCELKQLQELDISYNDLNG-LPSCLTNLNNLQVLDISFNNFS 113

Query: 380  GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 439
            G+IS S +  LTSI +L+LS+NHF+IP+SL P FN S LK  +  +NEI       H+L 
Sbjct: 114  GNISLSRIGSLTSIRDLKLSDNHFQIPISLGPFFNLSNLKNLNGDHNEIYESTELVHNLI 173

Query: 440  PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 499
            P+FQL+ LSL+  +G   TFPKFLY+QH+L+  +LSHIK+IGEFP+WLL+NNTKLE LYL
Sbjct: 174  PRFQLQRLSLAC-HGFGGTFPKFLYYQHDLQFVDLSHIKIIGEFPSWLLQNNTKLEALYL 232

Query: 500  VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS 559
            VN SL+G  +LP  SH  L  LD+S N+ Q  IP +IG   P L + N+S N   GSIPS
Sbjct: 233  VNSSLSGSLQLPNDSHVNLSRLDISRNHIQNQIPTKIGAYFPWLEFLNLSRNYFSGSIPS 292

Query: 560  SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 619
            S  N+  L  LDLSNN L+G IP+ L   C++L  L LSNN LKG  F R F+L  L  L
Sbjct: 293  SISNMSSLGVLDLSNNGLSGNIPEQLVEGCLSLRGLVLSNNHLKGQFFWRSFNLAYLTDL 352

Query: 620  LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 679
            +L GN   G +P SLS  S L+ L ++ NNLSGKIPRW+G +  LQ++ + +N+L G +P
Sbjct: 353  ILSGNQLTGILPNSLSNGSRLEALDVSLNNLSGKIPRWIGYMSSLQYLDLSENNLYGSLP 412

Query: 680  VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 739
              FC   ++                        +V+LSKN L G L  G    C SL  L
Sbjct: 413  SSFCSSRTM-----------------------TEVYLSKNKLEGSLI-GALDGCLSLNRL 448

Query: 740  DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 799
            DLS+NY  G IP+ I  L +LS L L +NNLEG++P QLC+L +L L+DLS N+L G I 
Sbjct: 449  DLSHNYFGGGIPESIGSLLELSFLLLGYNNLEGKIPSQLCKLEKLSLIDLSHNHLFGHIL 508

Query: 800  SCFD---------NTTLHESYNNNSSPDKPFKTSFSISGPQG-SVEKKILEIFEFTTKNI 849
             C            T+L+ S N+    ++  +  F +   +  S+ K +    EFTTK+I
Sbjct: 509  PCLQPTSKWQRERETSLNPSGNSLGRENRGPQIVFPVPAVEDPSMNKSV----EFTTKSI 564

Query: 850  AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
            +Y+++G +L  ++G+DLSCN L G IP ++GNL+ IQ LNLSHN+LTG IP TFSNL+ I
Sbjct: 565  SYSFKGIILKYISGIDLSCNNLTGEIPVELGNLSNIQVLNLSHNSLTGPIPPTFSNLKEI 624

Query: 910  ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 969
            ESLDLSYN L+G+IPRQL+DLN L+ F VA+NNLSGK PE  AQF+TFNKS Y+GNP LC
Sbjct: 625  ESLDLSYNNLNGEIPRQLLDLNFLSAFSVAHNNLSGKTPEMVAQFSTFNKSCYEGNPLLC 684

Query: 970  GLPLP--ICRSL--ATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPY 1025
            G PL     R+L  + +  + T  + ++ +IDM++F +TF+++Y++V+  I  VLY+NP 
Sbjct: 685  GPPLARNCTRALPPSPLPRSQTHKKEENGVIDMEAFIVTFSVAYIMVLLTIGSVLYINPR 744

Query: 1026 WRRRWLYLVEMWITSCYYFVIDNL-IPTRF 1054
            WRR W Y +   I +CYYF++DNL +P RF
Sbjct: 745  WRRAWFYFIGESINNCYYFLVDNLPVPARF 774

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073422|ref|XP_002304093.1| predicted protein [Populus trichocarpa] gi|222841525|gb|EEE79072.1| predicted protein [Populus trichocarpa]

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 435/1073 (40%), Positives = 586/1073 (54%), Gaps = 149/1073 (13%)

Query: 3    VLLLIIFGGGWSE---GCLDHERFALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVI 59
            +L L+   G WS    GCL+ ER                       W  +EC NTT RVI
Sbjct: 6    LLALLTLIGEWSGRCYGCLEEER-----------------------WPRIECDNTTKRVI 42

Query: 60   GLYL--SETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLD 117
             L L  +  +    W LNASLF PF++L+SLDL +N + GC ENEG + LS  SKL++L 
Sbjct: 43   QLSLFDARDFRLGDWVLNASLFLPFKELQSLDLGYNGLVGCLENEGFQVLS--SKLRELG 100

Query: 118  LRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV 175
            L  N  NN  SILS    L  L+S                   L  LE LD++ N+ ++ 
Sbjct: 101  LSDNRFNNDKSILSCFNGLKVLSS------------------RLKKLENLDLSGNQCNDT 142

Query: 176  EVSRGYRGLRKLKSLDLSGVGI-RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELH 234
             +     G   LKSLDLSG  +   G + L  + S  SL TL L+  N +          
Sbjct: 143  -IFPALTGFSSLKSLDLSGNQLTASGLRKLDFLQSLRSLKTLSLKDTNLSQG-----TFF 196

Query: 235  NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
            N + LE L LD++SL I+ LQ+  ++ P+LK LS+  C+++G L  QG+   K+L+ LD+
Sbjct: 197  NSSTLEELHLDNTSLPINFLQNTRAL-PALKVLSVGECDLHGTLPAQGWCELKNLKQLDL 255

Query: 295  RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
              AR           G ++P           LG             L+ L  L +  N  
Sbjct: 256  --AR--------NNFGGALP---------DCLGN------------LSSLTLLDVSENQF 284

Query: 355  RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 414
             G                   N ++G ++     +L S+E L LSNN F +P S++P  N
Sbjct: 285  TG-------------------NIVSGPLT-----NLVSLEFLSLSNNLFEVPTSMKPFMN 320

Query: 415  HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS-LSSNYGDSVTFPKFLYHQHELKEAE 473
            HS LK F ++NN +  E     +L PKFQL  LS L +    +V  P FLY+Q++L+  +
Sbjct: 321  HSSLKFFSSENNRLVTEPAAFDNLIPKFQLVFLSLLKTTEALNVHIPDFLYYQYDLRVLD 380

Query: 474  LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIP 533
            LSH  + G FP+WLL+NNT++E L L ++S  G  +LP H +  +  LD+SNNN    IP
Sbjct: 381  LSHNNITGMFPSWLLKNNTRMEQLDLSDNSFVGTLQLPDHPYPNMTKLDISNNNMNSQIP 440

Query: 534  VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593
             +I  ILP+L    +  N   G IPS  GN+  L  LDLSNN+L+    + L      L 
Sbjct: 441  KDICLILPNLESLRMVKNGFTGCIPSCLGNISSLSVLDLSNNQLSTVKLELLT----TLM 496

Query: 594  FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSG 652
            FL LSNN+L G I   +F+   L +L L GN+F G+I   SL +      L L+NN  SG
Sbjct: 497  FLKLSNNNLGGQIPISVFNSSTLEFLYLNGNNFCGQILYLSLYEQKMWFVLDLSNNQFSG 556

Query: 653  KIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSI 711
             +PRW  N   L+ I + KNH +GPIP + FC+ D L+ LD+S+NN+SG +PSCF P  I
Sbjct: 557  MLPRWFVNSTVLEAIDLSKNHFKGPIPRDFFCKFDHLEYLDLSENNLSGYIPSCFSPPQI 616

Query: 712  KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 771
              +HLSKN L G L  G F+N SSLVT+DL  N    SIP+WI  LS LS L L  N+ +
Sbjct: 617  THLHLSKNRLSGPLTYG-FYNSSSLVTMDLQDNSFTDSIPNWIGNLSSLSVLLLRANHFD 675

Query: 772  GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF-------KTS 824
                       QL +LD+S N L G +PSC  N T  ES          F       KT 
Sbjct: 676  ----------EQLSILDVSQNQLSGPLPSCLGNLTFKESSQKAILDFVIFDISRSIEKTY 725

Query: 825  FSISGP---------QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 875
            +   GP         +G     I E+ EFTTK ++Y Y+G+VL+ ++G+DLS N  VG I
Sbjct: 726  YETMGPPLVDSVYLGKGFGLNLIEEVIEFTTKKMSYGYKGKVLNYMSGIDLSNNNFVGAI 785

Query: 876  PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 935
            PP+ GNL+ I +LNLSHNNLTG+IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +
Sbjct: 786  PPEFGNLSEILSLNLSHNNLTGSIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEV 845

Query: 936  FIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNE-GDD 993
            F VA+NNLSGK PE   QF TF++S Y+GNPFLCG PL   C   A  S+   ++E GDD
Sbjct: 846  FSVAHNNLSGKTPERKYQFGTFDESCYEGNPFLCGPPLRNNCSEEAVSSQPVPNDEQGDD 905

Query: 994  NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1046
              +DM+ F+I+F + Y +V+  I  VLY+NPYWRRRWL+ +E  I +CYYF +
Sbjct: 906  GFVDMEFFYISFGVCYTVVVMTIAAVLYINPYWRRRWLFFIEDCIDTCYYFGV 958

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073436|ref|XP_002304095.1| predicted protein [Populus trichocarpa] gi|222841527|gb|EEE79074.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 418/995 (42%), Positives = 580/995 (58%), Gaps = 80/995 (8%)

Query: 92   WNNIAGCAENEGLERLSRLSKLKKLDLRG---NLCNNSILSSVARL--SSLTSLHLSHNI 146
            W + + C E +G+E  +   ++ +L L G       + +L++   L    L SL L  N 
Sbjct: 49   WVDSSNCCEWDGIECDNTTRRVIELSLSGARDQSFGDWVLNASLFLPFKELQSLELRFNG 108

Query: 147  LQGSIDAKEFDSLS-NLEELDINDNEIDNVE-VSRGYRGLRKLKSLDLSGVGIRDGNKLL 204
            L G ++ + F+ LS NL  LD++DN  +N + +     GL  LKSLDLSG G+       
Sbjct: 109  LVGCLENEGFEVLSSNLRNLDLSDNRFNNDKSILSCMTGLSTLKSLDLSGNGL------- 161

Query: 205  QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPS 263
               GS   + + HLE            +L N  +L Y   +DS L H+  L         
Sbjct: 162  --TGSGFEIISSHLE------------KLDNL-DLSYNIFNDSILSHLRGLSY------- 199

Query: 264  LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 323
            LK+L++SG  + G  +  G   F S    ++   R +L  +FLQ IG ++P LK LS++ 
Sbjct: 200  LKSLNLSGNMLLGSTTVNG-TFFNSSTLEELYLDRTSLPINFLQNIG-ALPDLKVLSVAE 257

Query: 324  STL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
              L GT    +  QG C L +L++L +  N+L GSLP CL N +SL++LDVS NQ TG+I
Sbjct: 258  CDLHGT----LPAQGWCELKNLRQLDLSGNNLGGSLPDCLGNLSSLQLLDVSENQFTGNI 313

Query: 383  SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
            +S PL +LTS+E L LSNN F +P+S++P  NHS LK F ++NN++  E     +L PKF
Sbjct: 314  ASGPLTNLTSLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNKLVTEPAAFDNLIPKF 373

Query: 443  QLKSLSLS-SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 501
            QL    LS +    +V  P FLY+Q++++  +LSH  +   FP+WLL+NNT+LE LYL N
Sbjct: 374  QLVFFRLSKTTEALNVKIPDFLYYQYDIRVLDLSHNNITAMFPSWLLKNNTRLEQLYLSN 433

Query: 502  DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 561
            +S  G  +L  H +  +  LD+SNNN  G IP +I  I P++    ++ N   G IPS  
Sbjct: 434  NSFVGTLQLQDHPYLNMTELDISNNNMNGQIPKDICLIFPNMWSLRMANNGFTGCIPSCL 493

Query: 562  GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621
            GN+  L+ LDLSNN+L+    + L      + FL LSNN+L G + + +F+   L +L L
Sbjct: 494  GNISSLKILDLSNNQLSIVKLEQLTT----IWFLKLSNNNLGGQLPTSVFNSSTLEYLYL 549

Query: 622  EGNHFVGEIPQSLSKCSSL-KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 680
             GN+F G+I   L     +   L L++N  SG +PRWL N  GL  I + KN+ +GPI  
Sbjct: 550  HGNNFWGQISDFLLYGWKMWSTLDLSDNQFSGMLPRWLVNSTGLIAIDLSKNYFKGPILR 609

Query: 681  EFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 740
            +FC+L+ L+ LD+S+NN+SG +PSCF P  I  VHLS+N L G L  G F+N SSLVT+D
Sbjct: 610  DFCKLNQLEYLDLSENNLSGYIPSCFSPPQITHVHLSENRLSGPLTYG-FYNNSSLVTMD 668

Query: 741  LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 800
            L  N   GS P+WI  LS LS L L  N+ +GE+P+QLC L QL +LD+S N L G +PS
Sbjct: 669  LRDNNFTGSFPNWIGNLSSLSVLLLRANHFDGELPVQLCLLEQLSILDVSQNQLSGPLPS 728

Query: 801  CFDNTTLHESYNNNSS-------PDKPFKTSFSISGP----------QGSVEKKILEIFE 843
            C  N T  ES     +            K  +   GP          +G +     E+ E
Sbjct: 729  CLGNLTFKESSQKTLADLGADVLSRSIEKAYYETMGPPLVESMYNLRKGFLLNFTEEVIE 788

Query: 844  FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 903
            FTTKN+ Y Y+G+ LS ++G+DLS N  VG IPP+ G+L++I +LNLSHNNLTG+IP TF
Sbjct: 789  FTTKNMYYRYKGKTLSYMSGIDLSNNNFVGAIPPEFGDLSKILSLNLSHNNLTGSIPATF 848

Query: 904  SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYD 963
            SNL+ IESLDLSYN L+G IP QL D+ TL +F VA+NNLSG  PE   QF TF++S Y+
Sbjct: 849  SNLKQIESLDLSYNNLNGVIPPQLTDITTLEVFSVAHNNLSGNTPERKYQFGTFDESCYE 908

Query: 964  GNPFLCGLPL------------PICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVI 1011
            GNPFLCG PL            P+              +GDD  IDM+ F+I F + Y +
Sbjct: 909  GNPFLCGPPLRNNCSEEAVPSQPVPSQPVPSQPVPYDEQGDDGFIDMEFFYINFGVCYTV 968

Query: 1012 VIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1046
            V+  IVVVLY++PYWRRRW Y +E  I +CYYFV+
Sbjct: 969  VVMIIVVVLYIDPYWRRRWSYFIEDCIDTCYYFVV 1003

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098008|ref|XP_002334579.1| predicted protein [Populus trichocarpa] gi|222873205|gb|EEF10336.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 422/984 (42%), Positives = 558/984 (56%), Gaps = 105/984 (10%)

Query: 75   NASLF---TPFQQLESLDLSWNNIAGCAENEGLERLS-RLSKLKKLDLRGNLCNNSILSS 130
            N S+F   T F  L+SL LS N + G     GL+ LS RL KL+ L L    CN+SI  S
Sbjct: 196  NDSIFPSLTGFSSLKSLYLSGNQLTG----SGLKDLSSRLKKLENLHLSEIQCNDSIFPS 251

Query: 131  VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190
            +   SSL SL+LS N L GS        L  LE LD++ N I N  +    RGL  LKSL
Sbjct: 252  LTGFSSLKSLYLSGNQLTGSGFEIISSHLGKLENLDLSHNNIFNDSILSHLRGLSHLKSL 311

Query: 191  DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
            +LSG      N LL S                     TT   L N               
Sbjct: 312  NLSG------NMLLGS---------------------TTINGLRN--------------- 329

Query: 251  ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 310
            + +LQS+ S +PSLK LS+        LS   F +  +LE L +    + +N  FLQ  G
Sbjct: 330  LDILQSLRS-WPSLKTLSLKDTN----LSQGTFFNSSTLEELHLDNTSLPIN--FLQNTG 382

Query: 311  ESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 369
             ++P+LK LS++   L GT    +  QG C L +L++L +  N+  G+LP CL N +SL+
Sbjct: 383  -ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGALPDCLGNLSSLQ 437

Query: 370  ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 429
            +LDVS NQ TG+I+  PL  L S+E L LSNN F +P+S++P  NHS LK F ++NN + 
Sbjct: 438  LLDVSDNQFTGNIAFGPLTKLISLEFLSLSNNLFEVPISMKPFMNHSSLKFFSSENNRLV 497

Query: 430  GEINESHSLTPKFQLKSLSLSSNYGD---SVTFPKFLYHQHELKEAELSHIKMIGEFPNW 486
             E     +L PKFQL    LSS+      +V    FLY+Q++L+  +LSH  + G FP+W
Sbjct: 498  TESAAFDNLIPKFQLVFFRLSSSPTSEALNVEILDFLYYQYDLRTLDLSHNNIFGMFPSW 557

Query: 487  LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 546
            LL+NNT++E LYL  +S  G  +L  H +  +  LD+SNNN  G IP +I  I P+L   
Sbjct: 558  LLKNNTRMEQLYLSENSFVGTLQLLDHPYPNMTELDISNNNINGQIPKDICLIFPNLWIL 617

Query: 547  NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 606
             ++ N   G IPS  GN   L FLDLSNN+L+    + L      ++ L LSNNSL G I
Sbjct: 618  RMADNGFTGYIPSCLGNFSSLSFLDLSNNQLSTVKLEQLTT----IQVLKLSNNSLGGQI 673

Query: 607  FSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
             + +F+    ++L L GN+F G+I    L        L L+NN  SG +PR   N    +
Sbjct: 674  PTSVFNSSISQYLYLGGNYFWGQISDFPLYGWKVWSVLDLSNNQFSGMLPRSFFNFTYDE 733

Query: 666  HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 725
             + + KN  +GPIP +FC+LD L+ LD+SDN +SG +PSCF P  I  +HLSKN L G L
Sbjct: 734  VLDLSKNLFKGPIPRDFCKLDRLEFLDLSDNYLSGYMPSCFNPPQITHIHLSKNRLSGPL 793

Query: 726  KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 785
              G F+N SSLVT+DL  N   GSIP+WI  LS LS L L  NN +GE+ +QLC L QL 
Sbjct: 794  TYG-FYNSSSLVTMDLRDNSFIGSIPNWIGNLSSLSVLLLRANNFDGELAVQLCLLEQLS 852

Query: 786  LLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 845
            +LD+S N L G +PSC  N TL E   N                 +GS            
Sbjct: 853  ILDVSQNQLSGPLPSCLGNLTLKEIPEN----------------ARGS------------ 884

Query: 846  TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 905
               I ++  G+VLS + G+DLS N  VG IPP+ GNL++I +LNLSHNNLTG+IP TFSN
Sbjct: 885  --RIWFSVMGKVLSYMYGIDLSNNNFVGAIPPEFGNLSKILSLNLSHNNLTGSIPATFSN 942

Query: 906  LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF-NKSSYDG 964
            L+ IESLDLSYN L+G IP QL ++ TL +F VAYNNLSG+ PE   QF TF +++ Y+G
Sbjct: 943  LKQIESLDLSYNNLNGAIPPQLTEITTLEVFSVAYNNLSGRTPERKYQFGTFDDENCYEG 1002

Query: 965  NPFLCGLPLP--ICRSLATMSEASTSNEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYV 1022
            NPFLCG PL          +       +GDD  IDM+ F+I+F + Y +V+  I  VLY+
Sbjct: 1003 NPFLCGPPLRNNCSEEAVPLQPVPNDEQGDDGFIDMEFFYISFGVCYTVVVMTIAAVLYI 1062

Query: 1023 NPYWRRRWLYLVEMWITSCYYFVI 1046
            NPYWRRRW Y +E  I +CYYFV+
Sbjct: 1063 NPYWRRRWSYFIEDCINTCYYFVV 1086

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124658|ref|XP_002330078.1| predicted protein [Populus trichocarpa] gi|222871503|gb|EEF08634.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 436/1055 (41%), Positives = 595/1055 (56%), Gaps = 102/1055 (9%)

Query: 75   NASLF---TPFQQLESLDLSWNNIAGCAENEGLERLS-RLSKLKKLDLRGNLCNNSILSS 130
            N S+F   T F  L+SLDLS+N + G     GL+ LS RL +L+ LDL  N CN+SI SS
Sbjct: 188  NDSIFSSITGFSSLKSLDLSYNEVTG----SGLKVLSSRLKRLENLDLSDNQCNDSIFSS 243

Query: 131  VARLSSLTSLHLSHNILQGS----IDAKEFDS---------------------------L 159
            +   SSL SL+LS+N L GS    I+   + S                           L
Sbjct: 244  LTGFSSLKSLNLSYNQLTGSSMVSIEKNGYYSFLQYTKWILPLYPSDNFLSGFQVLVSGL 303

Query: 160  SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS--------GV-GIRD----------- 199
             NLEEL +  N+++N  +     G   LKSLDLS        G+ G+R+           
Sbjct: 304  RNLEELHLYSNKLNN-NILSSLSGFSTLKSLDLSYNKFTGSTGLKGLRNLEELYLGFNKF 362

Query: 200  GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL-QSIG 258
             N +L S+  F +L +L L +N FT ++     L    NLE L L+ +    S+L +S+G
Sbjct: 363  NNSILSSLSGFSTLKSLDLSNNKFTGSIG----LKGLRNLETLNLEYTDFKESILIESLG 418

Query: 259  SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 318
            ++ PSLK L  S  +      G+G  +  SLE + + ++ +    SFL+ IG  + +LK 
Sbjct: 419  AL-PSLKTLYASYSKFKHF--GKGLSNSSSLEEVFLYYSYLP--ASFLRNIGH-LSTLKV 472

Query: 319  LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 378
            LSL+G      SS +  +G C L +L+ L++  N+L+G LP CL N +SLR LD+S NQL
Sbjct: 473  LSLAGVDF---SSTLPAEGWCELKNLEHLFLSRNNLKGVLPPCLGNLSSLRSLDLSDNQL 529

Query: 379  TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSL 438
             G+I+ S L HL  +E L +S NHF++P S     N S LK F   NNE+         L
Sbjct: 530  EGNIALSHLSHLPQLEYLSVSYNHFQVPKSFGSFMNLSNLKFFACDNNELI-PAPSFQPL 588

Query: 439  TPKFQLKSLSLS--SNYGDSVTFPKFLYHQHELKEAELSHIKMIGE-FPNWLLENNTKLE 495
             PKFQL   S S  ++      FP FL  Q++L   +LSH K +GE FP+WL ENNTKL 
Sbjct: 589  VPKFQLLFFSASNCTSKPHEAGFPNFLQSQYDLVVVDLSHNKFVGEPFPSWLFENNTKLN 648

Query: 496  FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 555
             LYL + S  GP +LP H    L+ +D+S N+  G I   I  I P L  F ++ N+L G
Sbjct: 649  RLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMMANNSLTG 708

Query: 556  SIPSSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 614
             IP  FGN+  L +LDLSNN ++ E+ +H       +L FL LSNN+ KG +   +F++ 
Sbjct: 709  CIPPCFGNMSSLGYLDLSNNHMSCELLEHNFPTVGSSLWFLKLSNNNFKGRLPLSVFNMT 768

Query: 615  NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN--LKGLQHIVMPKN 672
             L +L L+GN   G++  + S  SS     ++NN LSG +PR +GN  L  LQ I + +N
Sbjct: 769  GLLYLFLDGNKLAGQVSDTFSLASSFLWFDISNNILSGMLPRGIGNSSLNSLQGIDLSRN 828

Query: 673  HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 732
            H EG IP+E+     L+ LD+S+NN+SGSLP  F  L ++ VHL  N L G L    F+N
Sbjct: 829  HFEGTIPIEYFNSSGLEFLDLSENNLSGSLPLGFNALDLRYVHLYGNRLSGPLPF-DFYN 887

Query: 733  CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
             SSL TLDL  N L G IP+WID LS+LS   L  N   G++P QLC+L +L +LDLS+N
Sbjct: 888  LSSLATLDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPHQLCKLRKLSILDLSEN 947

Query: 793  NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS---------FSISGPQGSVEKKIL--EI 841
            N  GL+PSC  N  L+ + ++  + D P   S          SI G   S++  IL  EI
Sbjct: 948  NFSGLLPSCLRN--LNFTASDEKTLDAPRTGSDYGSGEEIFASIGGRGFSLDDNILWAEI 1005

Query: 842  -----FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 896
                  E T K   Y Y+G +L  ++ +DLSCN+  G IP + GNL+ I +LNLS NNLT
Sbjct: 1006 SVKISVELTAKKNFYTYEGDILRYMSVMDLSCNRFNGEIPTEWGNLSGIYSLNLSQNNLT 1065

Query: 897  GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFAT 956
            G IP +F NL+ IESLDLS+N L+G+IP QLV+L  L +F V+YNNLSG+ PE   QFAT
Sbjct: 1066 GLIPSSFFNLKQIESLDLSHNNLNGRIPAQLVELTFLEVFNVSYNNLSGRTPEMKNQFAT 1125

Query: 957  FNKSSYDGNPFLCGLPLPICRSLATMSEASTSNE--GDDNLIDMDSFFITFTISYVIVIF 1014
            F++SSY GNP LCG PL           A   N+  GD   IDMDSF+ +F + Y+IV+ 
Sbjct: 1126 FDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDFNGDGGFIDMDSFYASFGVCYIIVVL 1185

Query: 1015 GIVVVLYVNPYWRRRWLYLVEMWITSCYYFVIDNL 1049
             I  VL +NP+WRRRW Y +E  I +C  F+  N 
Sbjct: 1186 TIAAVLCINPHWRRRWFYFIEECIDTCCCFLAINF 1220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera]

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 418/1101 (37%), Positives = 598/1101 (54%), Gaps = 106/1101 (9%)

Query: 1    MFVLLLIIFGGGWSEGCLDHERFALLRLKHF---------FTDP--YDKGATDCCQWEGV 49
            +F+LLL+   G   +GC++ E+  LL  K F         F  P   D   ++CC WE V
Sbjct: 12   VFILLLVQICG--CKGCIEEEKMGLLEFKAFLKLNNEHADFLLPSWIDNNTSECCNWERV 69

Query: 50   ECSNTTGRVIGLYLSETYSG------------EYWYLNASLFTPFQQLESLDLSWNNIAG 97
             C+ TTGRV  L+ ++                ++W LN SLF PF++L  L+LS N+  G
Sbjct: 70   ICNPTTGRVKKLFFNDITRQHLEDNWYYYENVKFWLLNVSLFLPFEELHHLNLSANSFDG 129

Query: 98   CAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD 157
              ENEG + LS+L KL+ L+LR N  N +I+  ++ L+SL +L +S+N ++G   +++F 
Sbjct: 130  FIENEGFKSLSKLKKLEILNLRDNQFNKTIIKQLSGLTSLKTLVVSYNYIEGLFPSQDFA 189

Query: 158  SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 217
            SL+NLE LD++D           +  L  L+ LDLS               S  +L  L 
Sbjct: 190  SLNNLEILDLSD-----------FASLNNLEILDLS------------DFASLSNLKVLD 226

Query: 218  LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV 277
            L  N+F+  + ++  L +      L  +D             +  SL N  +S    +  
Sbjct: 227  LSYNSFSGIVPSSIRLMSSLKSLSLAGND-------------LNGSLPNQDLSSNLFSEN 273

Query: 278  LSGQGFPHFKSLEHLDMRFARIA--------LNTSFLQIIGESMPSLKYLSLSGSTLGTN 329
            LS    P+  SLE++D+ + +           N S LQ++           + GS     
Sbjct: 274  LSSTLLPNLTSLEYIDLSYNQFEGSFSFSSFANHSKLQVV-----------ILGSYNNKF 322

Query: 330  SSRILDQ--GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 387
               +L    G C L  LQEL +  N  +G+LP CL N TSLR+LD+S N L+G++SS  L
Sbjct: 323  ELHVLFSFVGFCQLNKLQELDLSYNLFQGTLPPCLNNLTSLRLLDLSSNHLSGNLSSPLL 382

Query: 388  VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLK--IFDAKNNEINGEINESHSLTPKFQLK 445
             +LTS+E + LS NHF    S     NHSKL+  I  + NN+   E        P FQLK
Sbjct: 383  PNLTSLEYIDLSYNHFEGSFSFSSFANHSKLQVVILGSDNNKFEVETEYPVGWVPLFQLK 442

Query: 446  SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA 505
            +L L SN   +   P FL +Q +L+  +LSH  + G F NWLLENNT+LEFL L N+SL 
Sbjct: 443  ALFL-SNCKLTGDIPDFLQYQFKLEVVDLSHNNLTGRFTNWLLENNTRLEFLVLRNNSLM 501

Query: 506  GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI 565
            G   LP+  + R+  LD+S+N   G +   +G ++P++V+ N+S N  +G +PSS   + 
Sbjct: 502  GQL-LPLRPNTRILSLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMS 560

Query: 566  FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 625
             L+ LDLS N  +GE+P  L +   +L  L LS N   G IFSR F++  L  L L+ N 
Sbjct: 561  SLRVLDLSANNFSGEVPKQL-LATKDLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQ 619

Query: 626  FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 685
            F+G +   +S  S L  L ++NN +SG+IP  +GN+  L+ +VM  N+  G +P E  +L
Sbjct: 620  FMGTLSNVISGSSQLMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQL 679

Query: 686  DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
              ++ LD+S N +SGSLPS      ++ +HL  NM  G +    F N S L+TLD+  N 
Sbjct: 680  QQMKFLDVSQNALSGSLPSLKSMEYLEHLHLQGNMFTGLIPR-DFLNSSDLLTLDMRDNR 738

Query: 746  LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 805
            L GSIP+ I  L +L  L L  N   G +P  LC L ++ L+DLS+N+  G IP CF + 
Sbjct: 739  LFGSIPNSISALLELRILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDI 798

Query: 806  TLHESYNNNS-----------SPDKPFKTSFSISGPQ--GSVEKKILEIFEFTTKNIAYA 852
               E    N               +     F++   +    V  +  E+ EF TKN   +
Sbjct: 799  RFGEMKKENDVFRQFIDFGYGGDSRNLYVGFTVKKWEFDSDVYDEKNEV-EFVTKNRHDS 857

Query: 853  YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 912
            Y G +L+ + GLDLSCN L G IP ++G L+ I  LNLSHN L  +IP +FSNL  IESL
Sbjct: 858  YSGDILNFMFGLDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIESL 917

Query: 913  DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG-- 970
            DLSYNKLSG+IP +LV+LN L +F VAYNN+SG++P+  AQF TF++ SY+GNPFLCG  
Sbjct: 918  DLSYNKLSGEIPLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGTL 977

Query: 971  LPLPICRSLATMSEASTSNEGDDNLIDMDS--FFITFTISYVIVIFGIVVVLYVNPYWRR 1028
            L      S+      S S E +    D++   FF +FT SY++++ G V +LY+NPYWR 
Sbjct: 978  LKRKCNTSIEPPCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRH 1037

Query: 1029 RWLYLVEMWITSCYYFVIDNL 1049
            RW   +E  I SCYYFV DNL
Sbjct: 1038 RWFNFIEECIYSCYYFVFDNL 1058

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134891|ref|XP_002327515.1| predicted protein [Populus trichocarpa] gi|222836069|gb|EEE74490.1| predicted protein [Populus trichocarpa]

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 364/819 (44%), Positives = 492/819 (60%), Gaps = 40/819 (4%)

Query: 252  SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG-FPHFKSLEHLDMRFARIALNTSFLQIIG 310
            S+L        +LK+L +S    NG+ +G G F +  +LE L +    + +N  FLQ IG
Sbjct: 140  SILSCFNGNLSTLKSLDLSA---NGLTAGSGTFFNSSTLEELYLDNTSLRIN--FLQNIG 194

Query: 311  ESMPSLKYLSLSGSTL-GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 369
             ++P+LK LS++   L GT    +  QG C L +L++L +  N+  GSLP CL N +SL+
Sbjct: 195  -ALPALKVLSVAECDLHGT----LPAQGWCELKNLKQLDLARNNFGGSLPDCLGNLSSLQ 249

Query: 370  ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 429
            +LDVS NQ TG+ +S PL +L S+E L LSNN F +P+S++P  NHS LK F ++NN + 
Sbjct: 250  LLDVSENQFTGNFTSGPLTNLISLEFLLLSNNLFEVPISMKPFLNHSSLKFFSSENNRLV 309

Query: 430  GEINESHSLTPKFQLKSLSLSSNYGDSV--TFPKFLYHQHELKEAELSHIKMIGEFPNWL 487
             E     +L PKFQL    LSS+         P FLY+Q +L+  +LSH  + G FP+WL
Sbjct: 310  TEPVAFDNLIPKFQLVFFRLSSSPTSEALNVIPDFLYYQLDLRALDLSHNNITGMFPSWL 369

Query: 488  LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
            L+NNT+LE LYL  +   G  +L  H +  +  LD+SNNN  G I  +I  I P+L    
Sbjct: 370  LKNNTRLEQLYLSANFFVGTLQLQDHPYSNMVELDISNNNMSGQISKDICLIFPNLWTLR 429

Query: 548  ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
            ++ N   G IPS  GN+  L FLDLSNN+L+    + L      +  L LSNNSL G I 
Sbjct: 430  MAKNGFTGCIPSCLGNISSLLFLDLSNNQLSTVQLEQLT-----IPVLKLSNNSLGGQIP 484

Query: 608  SRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
            + +F+    ++L L GN+F G+I    L     L  L L+NN  SG +PR   N   L+ 
Sbjct: 485  TSVFNSSTSQFLYLNGNNFSGQISDFPLYGWKELNVLDLSNNQFSGMLPRIFVNFTDLRV 544

Query: 667  IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 726
            + + KNH +GPIP +FC+L  LQ LD+S+NN+SG +PSCF P  +  VHLSKN L G L 
Sbjct: 545  LDLSKNHYKGPIPKDFCKLGRLQYLDLSENNLSGYIPSCFSPPPLTHVHLSKNRLSGPLT 604

Query: 727  EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 786
             G FFN S LVT+DL  N L GSIP+WI   S LS L L  N+ +GE+P+QLC L QL +
Sbjct: 605  YG-FFNSSYLVTMDLRDNSLTGSIPNWIGNHSSLSVLLLRANHFDGELPVQLCLLEQLSI 663

Query: 787  LDLSDNNLHGLIPSCFDNTTLHESYNNNSSP-------DKPFKTSFSISGPQGSVEKKIL 839
            LD+S N L G +PSC  N T  ES              +   K  +   GP       +L
Sbjct: 664  LDVSQNQLSGPLPSCLGNLTFKESSQKARMDLGASIVLESMEKAYYKTMGPPLVDSVYLL 723

Query: 840  ----------EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 889
                      E+ EF TKN+ Y Y+G +LS ++G+DLS N   G IP + GNL+ I++LN
Sbjct: 724  GKDFRLNFTEEVIEFRTKNMYYGYKGNILSYMSGIDLSNNNFGGAIPQEFGNLSEIRSLN 783

Query: 890  LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
            LSHNN T +IP TFSNL+ IESLDLSYN L+G IP QL ++ TL +F VA+NNLSG  PE
Sbjct: 784  LSHNNPTESIPATFSNLKQIESLDLSYNNLNGVIPPQLTEITTLEVFSVAHNNLSGWTPE 843

Query: 950  WTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTI 1007
               QF TF++S Y+GNPFLCG PL    S+  +S     +  +GD   IDM+ F+I+F +
Sbjct: 844  RKYQFGTFDESCYEGNPFLCGPPLRNNCSVEPVSSQPVPDDEQGDVGFIDMEFFYISFGV 903

Query: 1008 SYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVI 1046
             Y +V+  I  VLY+NPYWRRRWLY +E  I +CYYF++
Sbjct: 904  CYTVVVMTIAAVLYINPYWRRRWLYFIEDCIDTCYYFMV 942

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1056
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.831	0.878	0.341	9.5e-121
TAIR|locus:2025012	1083	RLP1 "AT1G07390" [Arabidopsis	0.655	0.638	0.362	5.8e-105
TAIR|locus:2101943	891	RLP45 "AT3G53240" [Arabidopsis	0.765	0.906	0.334	3.9e-99
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.785	0.850	0.331	8.2e-99
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.813	0.946	0.322	4.2e-95
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.75	0.847	0.324	3.6e-89
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.810	0.887	0.294	2.8e-82
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.640	0.809	0.281	2.4e-61
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.619	0.806	0.293	7.8e-60
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.581	0.523	0.306	9.1e-59

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 317/929 (34%), Positives = 476/929 (51%)

Query:   154 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 213
             K    L NLE LD++ +  +N  +         L +L L+   +     L++      +L
Sbjct:    66 KSLSRLRNLEILDLSSHRFNN-SIFPFLNAATSLTTLFLTYNNMHSPF-LVKEFKDLTNL 123

Query:   214 NTLHLESNNFTATLTTTQ--ELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
               L L  N F  ++ T     L  F  LE L L D+  +  +   + S   SLK+LS+ G
Sbjct:   124 EHLDLRGNRFNGSIPTQDYNSLRRFRKLEILDLSDNLFNSRIFPFLNSA-TSLKSLSLWG 182

Query:   272 CEVNGVLSGQGFPHFKSLEHLDM---RF-ARIALNTSFL--QIIGESMPXXXXXXXXXXX 325
               + G    +      ++E LD+   RF   I +   F   ++    +            
Sbjct:   183 NNMGGPFPAKELRDLTNVELLDLSRNRFNGSIPVRALFALRKLKALDLSDNEFSSSVELQ 242

Query:   326 XXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 385
                   + L  G CP  +++EL + NN L G  P CL + T LR+LD+S NQLTG++ S+
Sbjct:   243 GKFAKTKPLS-GTCPWKNMEELKLSNNKLAGQFPLCLTSLTGLRVLDLSSNQLTGNVPSA 301

Query:   386 PLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEINESHSLTPKFQ 443
              L +L S+E L L  N+F    SL  L N SKLK+   D+++N +  E+    S  PKFQ
Sbjct:   302 -LANLESLEYLSLFGNNFEGFFSLGLLANLSKLKVLRLDSQSNSL--EVEFETSWKPKFQ 358

Query:   444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 503
             L  ++L S   + V  P FL HQ +L   +LS  ++ G FP+WLLENNTKLE L L N+S
Sbjct:   359 LVVIALRSCNLEKV--PHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKLEVLLLQNNS 416

Query:   504 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE-IGDILPSLVYFNISMNALDGSIPSSFG 562
                 F+LP  +H  L FL+VS N F  H+ ++  G ILP LV  N++ N   G++PSS  
Sbjct:   417 FTS-FQLPKSAHNLL-FLNVSVNKFN-HLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLD 473

Query:   563 NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLL-L 621
             N+  ++FLDLS+N+  G++P      C              G +F    +   L W++ +
Sbjct:   474 NMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL-WVMSM 532

Query:   622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 681
             + N F G I +      SL  L ++NN L+G IP W+G  +GL  + +  N LEG IP  
Sbjct:   533 DNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTS 592

Query:   682 FCRLDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 738
                +  LQ+LD+S N +SG +P   S  Y  ++  + L  N L G + +    N   ++ 
Sbjct:   593 LFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAV--LLLQNNNLSGVIPDTLLLN---VIV 647

Query:   739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLI 798
             LDL  N L+G++P++I+    +S L L  NN  G++P                   +G I
Sbjct:   648 LDLRNNRLSGNLPEFIN-TQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSI 706

Query:   799 PSCFDNTTL-----HESYNNN------SSPDKPFKTSFSISGPQGSVEKKILEI-FEFTT 846
             PSC  NT+       +SY  +      ++ D  +  S  +      V +   +   EF T
Sbjct:   707 PSCLSNTSFGLRKGDDSYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNETNSQTKIEFAT 766

Query:   847 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 906
             K+   AY G  L LL G+DLS N+L G IP ++G L  ++ LNLSHNNL+G I  +FS L
Sbjct:   767 KHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGL 826

Query:   907 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNP 966
             +++ESLDLS+N+L G IP QL D+ +LA+F V+YNNLSG +P+   QF TF   SY GNP
Sbjct:   827 KNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGR-QFNTFETQSYFGNP 885

Query:   967 FLCGLPLPICRSLATMSEASTSN--EGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNP 1024
              LCG  + I  S A+ +   T N  E D++ +DM+SF+ +F  +YV ++ GI+  L  + 
Sbjct:   886 LLCGKSIDI--SCASNNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDS 943

Query:  1025 YWRRRWLYLVEMWITSCYYFVIDNLIPTR 1053
              W R W Y+V+ ++      +  N   T+
Sbjct:   944 PWSRAWFYIVDAFVLKVRNMLWQNTAGTK 972

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
 Identities = 264/728 (36%), Positives = 382/728 (52%)

Query:   337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI-EE 395
             G+C L  L+EL + +N L  SLP+CL N T LR LD+S NQL G++SS  +  L S+ E 
Sbjct:   353 GICRLMKLRELDLSSNALT-SLPYCLGNLTHLRTLDLSNNQLNGNLSSF-VSGLPSVLEY 410

Query:   396 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 455
             L L +N+F        L N ++L +F   +     ++    S  P FQLK L LS N   
Sbjct:   411 LSLLDNNFDGSFLFNSLVNQTRLTVFKLSSKVGVIQVQTESSWAPLFQLKMLYLS-NCSL 469

Query:   456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 515
               T   FL HQ +L   +LSH K+ G FP WL++NNT+L+ + L  +SL    +LPI  H
Sbjct:   470 GSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNTRLQTILLSGNSLT-KLQLPILVH 528

Query:   516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
               L+ LD+S+N     I  +IG + P+L + N S N   G+IPSS G +  LQ LD+S+N
Sbjct:   529 G-LQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQVLDMSSN 587

Query:   576 KLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 635
              L G++P      C             +G IFS+  +L  L  L L+GN+F G + + L 
Sbjct:   588 GLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGSLEEGLL 647

Query:   636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDIS 694
             K  +L  L +++N  SG +P W+G +  L ++ M  N L+GP P  F R    ++++DIS
Sbjct:   648 KSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFP--FLRQSPWVEVMDIS 705

Query:   695 DNNISGSLP-SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
              N+ SGS+P +  +P S++++ L  N   G L  G  F  + L  LDL  N  +G I + 
Sbjct:   706 HNSFSGSIPRNVNFP-SLRELRLQNNEFTG-LVPGNLFKAAGLEVLDLRNNNFSGKILNT 763

Query:   754 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNN 813
             ID  S+L  L L +N+ +  +P                    G IPSCF   +     N+
Sbjct:   764 IDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAEQND 823

Query:   814 NSS--------------PDKPFKTSFSIS-GPQGSVEKKILEIFEFTTKNIAYAYQGRVL 858
              +               P   + +  ++  G +   + K   + +F TK+   AYQG +L
Sbjct:   824 RTMSLVADFDFSYITFLPHCQYGSHLNLDDGVRNGYQPKPATVVDFLTKSRYEAYQGDIL 883

Query:   859 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 918
               + GLDLS N+L G IP +IG+L  I++LNLS N LTG+IP + S L+ +ESLDLS NK
Sbjct:   884 RYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLESLDLSNNK 943

Query:   919 LSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL-PICR 977
             L G IP  L DLN+L    ++YNNLSG+IP +     TF++ SY GN  LCGLP    C 
Sbjct:   944 LDGSIPPALADLNSLGYLNISYNNLSGEIP-FKGHLVTFDERSYIGNAHLCGLPTNKNCI 1002

Query:   978 SLATMSEASTS-------NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRW 1030
             S       S S       NE + N+IDM  F+ T    Y+     +   LY++  W R W
Sbjct:  1003 SQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYIDSRWSREW 1062

Query:  1031 LYLVEMWI 1038
              Y V++ +
Sbjct:  1063 FYRVDLCV 1070

GO:0005575 "cellular_component" evidence=ND

GO:0007165 "signal transduction" evidence=IC

GO:0006457 "protein folding" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 286/854 (33%), Positives = 429/854 (50%)

Query:   210 FPSLNTLHLESNNFTATLTTTQE---LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 266
             F  L +L+L S  F       +    L +  NLE L L  +    S+L  +     SLK 
Sbjct:    49 FEELQSLNLSSGYFKGWFDERKGGKGLGSLRNLETLDLGVNFYDTSVLPYLNEAV-SLKT 107

Query:   267 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXX 326
             L +      G    Q   +  SLE LD++F + +      Q+  + +             
Sbjct:   108 LILHDNLFKGGFPVQELINLTSLEVLDLKFNKFSG-----QLPTQELTNLRNLRALDLSN 162

Query:   327 XXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSP 386
                   +  QG+C L  LQEL +  N   G +P C +  + LR+LD+S N L+G I    
Sbjct:   163 NKFSGSLQKQGICRLEQLQELRLSRNRFEGEIPLCFSRFSKLRVLDLSSNHLSGKIPYF- 221

Query:   387 LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH-SLTPKFQLK 445
             +    S+E L L +N F    SL  +   ++LK+F   +     +I E++ S   + QL 
Sbjct:   222 ISDFKSMEYLSLLDNDFEGLFSLGLITELTELKVFKLSSRSGMLQIVETNVSGGLQSQLS 281

Query:   446 SLSLSS-NYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 504
             S+ LS  N G     P FL++Q EL+  +LS+  + G FP WLLENNT+L+ L L N+S 
Sbjct:   282 SIMLSHCNLGK---IPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTELQALLLQNNSF 338

Query:   505 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 564
                  LP  + +RL+ LD+S NNF   +P ++G IL SL + N+S N   G++PSS   +
Sbjct:   339 K-TLTLP-RTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARM 396

Query:   565 IFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGN 624
               ++F+DLS N  +G++P +L   C              G I  +     +L  L+++ N
Sbjct:   397 ENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNN 456

Query:   625 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
              F G+IP++L     L  + L+NN L+G IPRWLGN   L+ + +  N L+G IP     
Sbjct:   457 MFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFN 515

Query:   685 LDSLQILDISDNNISGSLP---SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 741
             +  L +LD+S N +SGSLP   S  Y   I  +H   N L G + +  ++    L  LDL
Sbjct:   516 IPYLWLLDLSGNFLSGSLPLRSSSDYGY-ILDLH--NNNLTGSIPDTLWYG---LRLLDL 569

Query:   742 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSC 801
               N L+G+IP        +S + L  NNL G++P+                  +  IPSC
Sbjct:   570 RNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSC 628

Query:   802 FDNTTLHESYNNNSSPD-KP------FKTSFS-------ISGPQGSVEKKI-LEI-FEFT 845
               N +     ++N+  D  P      F   ++       I   + S++  +   +  EF 
Sbjct:   629 VTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLDYSVDFNVQVEFA 688

Query:   846 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 905
              K     Y    L+ + GLDLS N+L G+IP ++G+L R+++LNLS N+L+G+IP +FSN
Sbjct:   689 VKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSN 748

Query:   906 LRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 965
             LR IESLDLS+NKL G IP QL  L +L +F V+YNNLSG IP+   QF TF + SY GN
Sbjct:   749 LRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGK-QFNTFGEKSYLGN 807

Query:   966 PFLCGLPLPICRSLATMSEASTSNEGDDN-LIDMDSFFITFTISYVIVIFGIVVVLYVNP 1024
               LCG P        T+S      + D++ L+D+   + +   +YV V+ G +V L  + 
Sbjct:   808 FLLCGSPTKRSCGGTTISSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDS 867

Query:  1025 YWRRRWLYLVEMWI 1038
              WRR W  LV+ +I
Sbjct:   868 PWRRAWFCLVDTFI 881

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 295/889 (33%), Positives = 435/889 (48%)

Query:   186 KLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH------LESNNFTATLTTTQELHNFTNL 239
             +L+SL+LSG    + N L   +  + SL  L       L SN+F  ++     L+  T+L
Sbjct:   107 ELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDLSSNSFNNSIFPF--LNAATSL 164

Query:   240 EYLTLDDS----SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
               L +  +     L I  L+++  +   L +LS SG   NG +    F H + L+ LD+ 
Sbjct:   165 TTLFIQSNYIGGPLPIKELKNLTKL--ELLDLSRSG--YNGSIPE--FTHLEKLKALDLS 218

Query:   296 FARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNNDLR 355
                 +   S +++  + +                   I  +  C + +L++L +  N   
Sbjct:   219 ANDFS---SLVEL--QELKVLTNLEVLGLAWNHLDGPIPKEVFCEMKNLRQLDLRGNYFE 273

Query:   356 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH 415
             G LP CL N   LR+LD+S NQL+G++ +S    L S+E L LS+N+F    SL PL N 
Sbjct:   274 GQLPVCLGNLNKLRVLDLSSNQLSGNLPAS-FNSLESLEYLSLSDNNFEGFFSLNPLANL 332

Query:   416 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS 475
             +KLK+F   +     ++    +  PKFQL   +L   +      P FL +Q  L+  +LS
Sbjct:   333 TKLKVFRLSSTSEMLQVETESNWLPKFQLTVAALP--FCSLGKIPNFLVYQTNLRLVDLS 390

Query:   476 HIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 535
               ++ G+ P WLLENN +L+ L L N+S    F++P   HK L+ LD S N+  G +P  
Sbjct:   391 SNRLSGDIPTWLLENNPELKVLQLKNNSFT-IFQIPTIVHK-LQVLDFSANDITGVLPDN 448

Query:   536 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXX 595
             IG +LP L++ N S N   G++PSS G +  + FLDLS N  +GE+P  L   C      
Sbjct:   449 IGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITL 508

Query:   596 XXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 655
                     G I      L +L  L +  N F GEI   L    +L     +NN L+G I 
Sbjct:   509 QLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLIS 568

Query:   656 RWLG-NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP--LSIK 712
               +  +   L  +++  N LEG +P     +  L  LD+S N +SG LPS        IK
Sbjct:   569 SSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIK 628

Query:   713 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
              + L  N   G L      N      LDL  N L+GSIP +++   ++  L L  NNL G
Sbjct:   629 -IFLHNNSFTGPLPVTLLENA---YILDLRNNKLSGSIPQFVN-TGKMITLLLRGNNLTG 683

Query:   773 EVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDN--TTLHESYN-NNSSPDKPFKTSFSISG 829
              +P                   +G+IP C ++  T L E    +  S +  F  S  +  
Sbjct:   684 SIPRKLCDLTSIRLLDLSDNKLNGVIPPCLNHLSTELGEGIGLSGFSQEISFGDSLQMEF 743

Query:   830 PQGS--VEK---------KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 878
              + +  V++          I+EI EF  K    ++ G  L  + GLDLS N+L G IP +
Sbjct:   744 YRSTFLVDEFMLYYDSTYMIVEI-EFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAE 802

Query:   879 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 938
             +G+L++++ LNLS N L+ +IP  FS L+ IESLDLSYN L G IP QL +L +LA+F V
Sbjct:   803 LGDLSKLRALNLSRNLLSSSIPANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNV 862

Query:   939 AYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP-ICRSLATMSEASTSNE------G 991
             ++NNLSG IP+   QF TFN +SY GNP LCG P    C       EA    E       
Sbjct:   863 SFNNLSGIIPQG-GQFNTFNDNSYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDD 921

Query:   992 DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1040
             D+  IDM   + T   +Y I + GI+V++  +  WRR WL +V+ +I S
Sbjct:   922 DEAAIDMVVLYWTTGSTYAIALIGILVLMCFDCPWRRTWLCIVDAFIAS 970

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 288/894 (32%), Positives = 428/894 (47%)

Query:   155 EFDSLSNLEELDINDN--EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN-KLLQSMGSFP 211
             E+DS+      D   +  + +N++ +R  R L  L       + I   N  LL       
Sbjct:    36 EYDSVLPTWTNDTKSDCCQWENIKCNRTSRRLTGLSLYTSYYLEISLLNLSLLHPFEEVR 95

Query:   212 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
             SL+  +   N     +   + L    NL+ L    +  + S+   + +   SL  LS+  
Sbjct:    96 SLDLSNSRLNGLVDDVEGYKSLRRLRNLQILNFSSNEFNNSIFPFLNAA-TSLTTLSLRR 154

Query:   272 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXX 331
               + G +  +   +  +LE LD+   RI      + +     P                 
Sbjct:   155 NNMYGPIPLKELKNLTNLELLDLSGNRI---DGSMPV--REFPYLKKLKALDLSSNGIYS 209

Query:   332 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 391
              +  Q  C + +LQEL +   +  G LP C  N   LR LD+S NQLTG+I  S    L 
Sbjct:   210 SMEWQVFCEMKNLQELDLRGINFVGQLPLCFGNLNKLRFLDLSSNQLTGNIPPS-FSSLE 268

Query:   392 SIEELRLSNNHFRIPVSLEPLFNHSKLK--IFDAKNNEINGEINESHSLTPKFQLKSLSL 449
             S+E L LS+N F    SL PL N +KLK  IF +K++ +  +I ES +  P FQL  L L
Sbjct:   269 SLEYLSLSDNSFEGFFSLNPLTNLTKLKVFIFSSKDDMVQVKI-ES-TWQPLFQLSVLVL 326

Query:   450 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFR 509
                  + +  P FL +Q  L   +LS  ++ G  P WLLENN +LE L L N+S    F+
Sbjct:   327 RLCSLEKI--PNFLMYQKNLHVVDLSGNRISGIIPTWLLENNPELEVLQLKNNSFT-IFQ 383

Query:   510 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 569
             +P   H  L+ LD S NN  G  P   G +LP+LV+ N S N   G+ PSS G +  + F
Sbjct:   384 MPTSVHN-LQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNISF 442

Query:   570 LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
             LDLS N L+GE+P      C              GH   R  +  +L  L +  N F G+
Sbjct:   443 LDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGK 502

Query:   630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 689
             I   L     L  L ++NN L G++P  L   + L  + +  N L G +P     LD+  
Sbjct:   503 IGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP-SHVSLDN-- 559

Query:   690 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
             +L + +NN +G +P  F   SI+ + L  N L G + +  F +   +  L L  N L G 
Sbjct:   560 VLFLHNNNFTGPIPDTFLG-SIQILDLRNNKLSGNIPQ--FVDTQDISFLLLRGNSLTGY 616

Query:   750 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHE 809
             IP  +   S++  L+L+ N L G +P                   +  +    ++  L  
Sbjct:   617 IPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYY--VAVALESFYL-- 672

Query:   810 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 869
              +  ++   + F+  +S       ++ K      + +   A+ +    L+ + GLDLS N
Sbjct:   673 GFYKSTFVVENFRLDYS---NYFEIDVKFATKQRYDSYIGAFQFSEGTLNSMYGLDLSSN 729

Query:   870 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 929
             +L G IP ++G+L +++ LNLSHN L+  IP +FS L+ IESLDLSYN L G IP QL +
Sbjct:   730 ELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSYNMLQGSIPHQLTN 789

Query:   930 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI-CRSLATMSEASTS 988
             L +LAIF V+YNNLSG IP+   QF TF+++SY GNP LCG P    C +     E +  
Sbjct:   790 LTSLAIFNVSYNNLSGIIPQGK-QFNTFDENSYLGNPLLCGPPTDTSCETKKNSEENANG 848

Query:   989 NEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITS 1040
              E DD    IDM  F+ +   +YV  + GI+V++ V+  WRR WL LV+ +I S
Sbjct:   849 GEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLVDAFIAS 902

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 277/854 (32%), Positives = 405/854 (47%)

Query:   219 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 278
             E N F   +   + L    NL+ + L  +  + S    + +   SL  L ++  E++G  
Sbjct:   106 EFNGFFDDVEGYRSLSGLRNLKIMDLSTNYFNYSTFPFLNAA-TSLTTLILTYNEMDGPF 164

Query:   279 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGL 338
               +G     +LE LD+R  +  LN S  ++I                          Q L
Sbjct:   165 PIKGLKDLTNLELLDLRANK--LNGSMQELIHLKKLKALDLSSNKFSSSMEL-----QEL 217

Query:   339 CPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
               L +L+ L +  N + G +P        +LR LD+  N   G I   PL  L S+++LR
Sbjct:   218 QNLINLEVLGLAQNHVDGPIPIEVFCKLKNLRDLDLKGNHFVGQI---PLC-LGSLKKLR 273

Query:   398 ---LSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS--LS 450
                LS+N     +P S   L     L+     +N  +G    S SL P   L +L   + 
Sbjct:   274 VLDLSSNQLSGDLPSSFSSL---ESLEYLSLSDNNFDG----SFSLNPLTNLTNLKFVVV 326

Query:   451 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 510
               +      P FL +Q +L+  +LS   + G  P WLL NN +LE L L N+S    F +
Sbjct:   327 LRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPELEVLQLQNNSFT-IFPI 385

Query:   511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 570
             P   H  L+  D S NN  G  P ++   LP+LV  N S N   G  P+S G +  + FL
Sbjct:   386 PTMVHN-LQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNISFL 443

Query:   571 DLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEI 630
             DLS N  +G++P      CV             G    R  +  +L  L ++ N F G I
Sbjct:   444 DLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTGNI 503

Query:   631 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 690
                LS  + L+ L ++NN LSG IPRWL     L ++++  N LEG IP     +  L  
Sbjct:   504 GGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFLSF 563

Query:   691 LDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
             LD+S N  SG+LPS     L I  + L  N   G + + T     S+  LDL  N L+GS
Sbjct:   564 LDLSGNQFSGALPSHVDSELGI-YMFLHNNNFTGPIPD-TLLK--SVQILDLRNNKLSGS 619

Query:   750 IPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT--- 806
             IP + D    ++ L L  NNL G +P                   +G+IPSC  N +   
Sbjct:   620 IPQF-DDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGR 678

Query:   807 LHE---------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE--FTTKNIAYAYQG 855
             L E         S+   S   + +K++F +   +  V++   +  E  F  K    +Y G
Sbjct:   679 LQEDAMALNIPPSFLQTSLEMELYKSTFLVDKIE--VDRSTYQETEIKFAAKQRYDSYSG 736

Query:   856 R------VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
             R      +L L+ G+DLS N+L G IP ++G+L +++TLNLSHN+L G+IP +FS L  +
Sbjct:   737 RSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLIDV 796

Query:   910 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 969
             ESLDLS+N L G IP+ L  L +LA+F V+ NNLSG IP+   QF TF + SY GNP LC
Sbjct:   797 ESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGR-QFNTFEEESYLGNPLLC 855

Query:   970 GLPLP-ICRSLATMSEASTSNEGDDN--LIDMDSFFITFTISYVIVIFGIVVVLYVNPYW 1026
             G P    C +  +  EA    E +D+   IDM  F+ +    YV  + G++V++  +  W
Sbjct:   856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915

Query:  1027 RRRWLYLVEMWITS 1040
             RR WL +V+ +I S
Sbjct:   916 RRAWLRIVDAFIAS 929

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 262/890 (29%), Positives = 421/890 (47%)

Query:   165 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 224
             L + DN + N+ +   +  +R L        G+ D  +  +S+     L  L L SN F 
Sbjct:    86 LSLKDNSLLNLSLLHPFEDVRSLNLSSSRCSGLFDDVEGYKSLRKLRKLEILDLASNKFN 145

Query:   225 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 284
              ++     L   T+L  L L  +++  S          +L+ L +S    NG +  Q   
Sbjct:   146 NSIF--HFLSAATSLTTLFLRSNNMDGSFPAKELRDLTNLELLDLSRNRFNGSIPIQELS 203

Query:   285 HFKSLEHLDM---RFA-RIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI---LDQG 337
               + L+ LD+    F+  + L   F   +  S+                  ++   L   
Sbjct:   204 SLRKLKALDLSGNEFSGSMELQGKFCTDLLFSIQSGICELNNMQELDLSQNKLVGHLPSC 263

Query:   338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
             L  L  L+ L + +N L G++P  L +  SL  L +  N   GS S   L +L+++  L+
Sbjct:   264 LTSLTGLRVLDLSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGSFSFGSLANLSNLMVLK 323

Query:   398 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 457
             L +    + V  E  +   K ++        N E    H L  +  L+ + LS N   S 
Sbjct:   324 LCSKSSSLQVLSESSWK-PKFQLSVIALRSCNME-KVPHFLLHQKDLRHVDLSDN-NISG 380

Query:   458 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VND-SLAGPFRLP-IHS 514
               P +L   +   +  L    +   F   + ++   L FL +  ND +   P  +  I  
Sbjct:   381 KLPSWLLANNTKLKVLLLQNNLFTSFQ--IPKSAHNLLFLDVSANDFNHLFPENIGWIFP 438

Query:   515 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-LQFLDLS 573
             H  LR+L+ S NNFQ ++P  +G+ +  + Y ++S N+  G++P SF N  + +  L LS
Sbjct:   439 H--LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLS 495

Query:   574 NNKLTGEI-PDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 632
             +NKL+GEI P+      +             G I   + SL NL  L +  N+  G IP 
Sbjct:   496 HNKLSGEIFPESTNFTNILGLFMDNNLFT--GKIGQGLRSLINLELLDMSNNNLTGVIPS 553

Query:   633 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 692
              + +  SL  L +++N L G IP  L N   LQ + +  N L G IP +    + + +L 
Sbjct:   554 WIGELPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLL- 612

Query:   693 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 752
             + DN +SG++P      +++ + L  N   G++ E  F N  ++  L L  N   G IP 
Sbjct:   613 LQDNKLSGTIPDTLLA-NVEILDLRNNRFSGKIPE--FINIQNISILLLRGNNFTGQIPH 669

Query:   753 WIDGLSQLSHLNLAHNNLEGEVP-IXXXXXXXXXXXXXXXXXXHGL-IPS-CFDNTTLHE 809
              + GLS +  L+L++N L G +P                     G+  PS  F+  +LH+
Sbjct:   670 QLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQ 729

Query:   810 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEI-FEFTTKNIAYAYQGRVLSLLAGLDLSC 868
              +++N +    FK+  ++  P     K   +   EF TK+   AY G  L LL G+DLS 
Sbjct:   730 DFSSNKNGGIYFKSLLTLD-PLSMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSE 788

Query:   869 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 928
             N+L G IP + G L  ++ LNLSHNNL+G IP + S++  +ES DLS+N+L G+IP QL 
Sbjct:   789 NELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLT 848

Query:   929 DLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTS 988
             +L +L++F V++NNLSG IP+   QF TF+  SY GN  LCG P     +  +  EA   
Sbjct:   849 ELTSLSVFKVSHNNLSGVIPQGR-QFNTFDAESYFGNRLLCGQPTNRSCNNNSYEEADNG 907

Query:   989 NEGDDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWI 1038
              E D+++IDM SF+++F  +YV ++ GI+  L  +  W R W Y V+ +I
Sbjct:   908 VEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 2.4e-61, Sum P(2) = 2.4e-61
 Identities = 197/700 (28%), Positives = 321/700 (45%)

Query:   341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
             L+HL  L +  N L G  P  + N   L  +D+  N L G+I +S   +LT + EL L  
Sbjct:   135 LSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNALGGNIPTS-FANLTKLSELHLRQ 193

Query:   401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
             N F     +  L N + L I D  +N  N  I+   S     +   +S +S +G    FP
Sbjct:   194 NQFTGGDIV--LSNLTSLSIVDLSSNYFNSTISADLSQLHNLERFWVSENSFFGP---FP 248

Query:   461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 520
              FL     L +  LS  +  G        +++KL  L +  ++L G     I +   L  
Sbjct:   249 SFLLMIPSLVDICLSENQFEGPINFGNTTSSSKLTELDVSYNNLDGLIPKSISTLVSLEH 308

Query:   521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
             L++S+NNF+G +P  I  ++ +L    +S N   G +PSS   ++ L+ LDLS+N   G 
Sbjct:   309 LELSHNNFRGQVPSSISKLV-NLDGLYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGR 367

Query:   581 IPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHF--VGEIPQSLSKCS 638
             +P  ++   V            +GH+   I+    L  + L  N F   G I + L   S
Sbjct:   368 VPSSISKL-VNLSSLDLSYNKFEGHVPQCIWRSSKLDSVDLSYNSFNSFGRILE-LGDES 425

Query:   639 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 698
               +   L++N+L G IP+W+ N +    +    NHL G IP          +L++ +N++
Sbjct:   426 LERDWDLSSNSLQGPIPQWICNFRFFSFLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSL 485

Query:   699 SGSLPS-CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 757
             SG +P  C     +  + +S N L G+L E +F NC  +  L++  N +  + P W+  L
Sbjct:   486 SGFMPDFCMDGSMLGSLDVSLNNLVGKLPE-SFINCEWMEYLNVRGNKIKDTFPVWLGSL 544

Query:   758 SQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXH--GLIPS-CFDNTTLHESYNNN 814
               L+ L L  N   G V                    +  G +P   F N T   S    
Sbjct:   545 QYLTVLVLRSNTFYGPVYKASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQR 604

Query:   815 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH 874
                   +K + +I G     +    +  +   K +   ++ ++      +D S N+  GH
Sbjct:   605 PMLTLDYKRNIAIPGSNYMGDDNHQDSIDLVYKGVDTDFE-QIFGGFKVIDFSGNRFSGH 663

Query:   875 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 934
             IP  IG L+ +  LNLS N  TG IP + +++  +E+LDLS N LSG+IPR L  L+ L+
Sbjct:   664 IPRSIGLLSELLHLNLSGNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLS 723

Query:   935 IFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDN 994
                 ++N+L G +P+ T QF + N SS+ GNP L GL   IC    T     TS   ++ 
Sbjct:   724 NINFSHNHLEGLVPQST-QFGSQNCSSFMGNPRLYGLD-QICGE--THVPIPTSLHPEEP 779

Query:   995 LIDMDSF---FITFTISYVIVIFGIVVVLYVNPYWRRRWL 1031
             L++ +     +I   I++   +F  +V+ ++   ++ +WL
Sbjct:   780 LLEPEETVLNWIAAAIAFGPGVFCGLVIGHIFTSYKHKWL 819

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 7.8e-60, P = 7.8e-60
 Identities = 204/694 (29%), Positives = 331/694 (47%)

Query:   352 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSL 409
             N   GS+P  L + T+L+ LD+S N + G++S   +  L +++EL L  N     IP  +
Sbjct:   140 NRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGD-IKELKNLQELILDENLIGGAIPSEI 198

Query:   410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
               L    +L     + N  N  I  S S   K  LK++ L +N+  S   P  + +   L
Sbjct:   199 GSLV---ELLTLTLRQNMFNSSIPSSVSRLTK--LKTIDLQNNFLSS-KIPDDIGNLVNL 252

Query:   470 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS-LAGPFRLP-IHSHKRLRFLDVSNNN 527
                 LS  K+ G  P+  + N   LE L L N++ L+G      +   ++L+ L +  NN
Sbjct:   253 STLSLSMNKLSGGIPS-SIHNLKNLETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNN 311

Query:   528 -FQGHIPVEIGDILPSLVYFNISMNA--LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 584
               Q +     G + P     ++S+ +  L+G+IP    N   L +LDLS N+L G  P  
Sbjct:   312 KLQWN---NNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLSINRLEGRFPKW 368

Query:   585 LAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 644
             LA   +             G +   +F   +L +L+L  N+F G+IP ++ + S +  L 
Sbjct:   369 LADLKIRNITLSDNRLT--GSLPPNLFQRPSLYYLVLSRNNFSGQIPDTIGE-SQVMVLM 425

Query:   645 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 704
             L+ NN SG +P+ +  +  L+ + + KN L G  P  F     L+ LDIS N  SG +P+
Sbjct:   426 LSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDISSNEFSGDVPA 484

Query:   705 CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ-LSHL 763
              ++  S   + +S+N   G+  +  F N S L+ LDL  N ++G++   I  LS  +  L
Sbjct:   485 -YFGGSTSMLLMSQNNFSGEFPQN-FRNLSYLIRLDLHDNKISGTVASLISQLSSSVEVL 542

Query:   764 NLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTT-LHESYNNNSSPDKPFK 822
             +L +N+L+G +P                    G +PS   N T + +S   ++   +P+ 
Sbjct:   543 SLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMIKSPEPSAMTIRPYF 602

Query:   823 TSFS-ISGPQGSVEKKILEIFEFTT--KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 879
             +S++ I   +  +E +  +IF      KN       R   L   LDLS NKL G IP  +
Sbjct:   603 SSYTDIPNIERLIEIESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSL 662

Query:   880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939
             GNL  ++ LNLS+N  +G IP +F +L  +ESLDLS+N L+G+IP+ L  L+ L    + 
Sbjct:   663 GNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLR 722

Query:   940 YNNLSGKIPEWTAQFATFNKSS-YDGNPFLCGLPLPI-CRSLATMSEASTSNEGD----D 993
              N L G+IPE + Q    N  + Y  N  +CG+ + + C    T   A    E D    +
Sbjct:   723 NNKLKGRIPE-SPQLDRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEE 781

Query:   994 NLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWR 1027
              +   ++  I  +  ++I     VV +  N  W+
Sbjct:   782 TIFSWNAAAIGCSCGFLIA----VVFMSYNELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 632 (227.5 bits), Expect = 9.1e-59, P = 9.1e-59
 Identities = 199/650 (30%), Positives = 297/650 (45%)

Query:   338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
             +C  + L  +  D N+L G +P CL +   L++   + N LTGSI  S +  L ++ +L 
Sbjct:   164 ICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVS-IGTLANLTDLD 222

Query:   398 LSNNHF--RIPVSLEPLFNHSKLKIFD-AKNNEINGEINESHSLTPKFQLKSLSLSSNYG 454
             LS N    +IP     L N   L + +     +I  EI    SL  + +L    L+    
Sbjct:   223 LSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLV-QLELYDNQLTGK-- 279

Query:   455 DSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS 514
                  P  L +  +L+   +   K+    P+ L    T+L  L L  + L GP    I  
Sbjct:   280 ----IPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLTHLGLSENHLVGPISEEIGF 334

Query:   515 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 574
              + L  L + +NNF G  P  I + L +L    +  N + G +P+  G +  L+ L   +
Sbjct:   335 LESLEVLTLHSNNFTGEFPQSITN-LRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHD 393

Query:   575 NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 634
             N LTG IP  ++ C               G I  R F   NL ++ +  NHF GEIP  +
Sbjct:   394 NLLTGPIPSSISNC-TGLKLLDLSHNQMTGEI-PRGFGRMNLTFISIGRNHFTGEIPDDI 451

Query:   635 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 694
               CS+L+ L + +NNL+G +   +G L+ L+ + +  N L GPIP E   L  L IL + 
Sbjct:   452 FNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLH 511

Query:   695 DNNISGSLPSCFYPLSIKQ-VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
              N  +G +P     L++ Q + +  N L G + E   F+   L  LDLS N  +G IP  
Sbjct:   512 SNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPE-EMFDMKLLSVLDLSNNKFSGQIPAL 570

Query:   754 IDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIP----SCFDNTTLHE 809
                L  L++L+L  N   G +P                    G IP    +   N  L+ 
Sbjct:   571 FSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYL 630

Query:   810 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG---LDL 866
             +++NN        T  +I    G +E  + EI    + N+      R L        LD 
Sbjct:   631 NFSNN------LLTG-TIPKELGKLEM-VQEID--LSNNLFSGSIPRSLQACKNVFTLDF 680

Query:   867 SCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
             S N L GHIP ++   +  I +LNLS N+ +G IP +F N+ H+ SLDLS N L+G+IP 
Sbjct:   681 SQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPE 740

Query:   926 QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 975
              L +L+TL    +A NNL G +PE +  F   N S   GN  LCG   P+
Sbjct:   741 SLANLSTLKHLKLASNNLKGHVPE-SGVFKNINASDLMGNTDLCGSKKPL 789

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1056
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-64
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-48
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-42
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	8e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  236 bits (604), Expect = 1e-64
 Identities = 193/619 (31%), Positives = 294/619 (47%), Gaps = 98/619 (15%)

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 427
           ++ +++S NQL+G I        +S+  L LSNN+F   +    + N   L+  D  NN 
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNM 151

Query: 428 INGEI-NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 486
           ++GEI N+  S      LK L L  N                          ++G+ PN 
Sbjct: 152 LSGEIPNDIGSF---SSLKVLDLGGNV-------------------------LVGKIPNS 183

Query: 487 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 546
           L  N T LEFL L ++ L G     +   K L+++ +  NN  G IP EIG  L SL + 
Sbjct: 184 L-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHL 241

Query: 547 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 606
           ++  N L G IPSS GN+  LQ+L L  NKL+G IP                        
Sbjct: 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP------------------------ 277

Query: 607 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
              IFSL+ L  L L  N   GEIP+ + +  +L+ L+L +NN +GKIP  L +L  LQ 
Sbjct: 278 -PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 667 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 724
           + +  N   G IP    + ++L +LD+S NN++G +P   C      K +  S N L G+
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLEGE 395

Query: 725 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 784
           + + +   C SL  + L  N  +G +P     L  +  L++++NNL+G +  +   +  L
Sbjct: 396 IPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454

Query: 785 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 844
           Q+L L+ N   G +P  F +  L                  S +   G+V +K+      
Sbjct: 455 QMLSLARNKFFGGLPDSFGSKRLE-------------NLDLSRNQFSGAVPRKL------ 495

Query: 845 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 904
                        LS L  L LS NKL G IP ++ +  ++ +L+LSHN L+G IP +FS
Sbjct: 496 -----------GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544

Query: 905 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 964
            +  +  LDLS N+LSG+IP+ L ++ +L    +++N+L G +P  T  F   N S+  G
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAG 603

Query: 965 NPFLCG----LPLPICRSL 979
           N  LCG      LP C+ +
Sbjct: 604 NIDLCGGDTTSGLPPCKRV 622

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  207 bits (528), Expect = 6e-55
 Identities = 149/438 (34%), Positives = 217/438 (49%), Gaps = 42/438 (9%)

Query: 517 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNN 575
           R+  +D+S  N  G I   I   LP +   N+S N L G IP   F     L++L+LSNN
Sbjct: 70  RVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 576 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 635
             TG IP         LE L LSNN L G I + I S  +L+ L L GN  VG+IP SL+
Sbjct: 129 NFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
             +SL+ L L +N L G+IPR LG +K L+ I +  N+L G IP E   L SL  LD+  
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 696 NNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
           NN++G +PS    L  ++ + L +N L G +   + F+   L++LDLS N L+G IP+ +
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELV 304

Query: 755 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF---DNTTLHESY 811
             L  L  L+L  NN  G++P+ L  L +LQ+L L  N   G IP      +N T+ +  
Sbjct: 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
            NN + + P     S                            G +  L+    L  N L
Sbjct: 365 TNNLTGEIPEGLCSS----------------------------GNLFKLI----LFSNSL 392

Query: 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 931
            G IP  +G    ++ + L  N+ +G +P  F+ L  +  LD+S N L G+I  +  D+ 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP 452

Query: 932 TLAIFIVAYNNLSGKIPE 949
           +L +  +A N   G +P+
Sbjct: 453 SLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  185 bits (470), Expect = 8e-48
 Identities = 198/728 (27%), Positives = 319/728 (43%), Gaps = 180/728 (24%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 135
           +S+  P + L +    WN+ A     +G+   +  S++  +DL G   +  I S++ RL 
Sbjct: 39  SSINDPLKYLSN----WNSSADVCLWQGIT-CNNSSRVVSIDLSGKNISGKISSAIFRLP 93

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 195
            + +++LS+N L G I    F + S+L  L++++N                    + +G 
Sbjct: 94  YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN--------------------NFTGS 133

Query: 196 GIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 255
             R         GS P+L TL L +N  +  +    ++ +F++L+ L L  + L      
Sbjct: 134 IPR---------GSIPNLETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVL------ 176

Query: 256 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPS 315
            +G I  SL NL+                                              S
Sbjct: 177 -VGKIPNSLTNLT----------------------------------------------S 189

Query: 316 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSF 375
           L++L+L+ + L     R L Q    +  L+ +Y+  N+L G +P+ +   TSL  LD+ +
Sbjct: 190 LEFLTLASNQLVGQIPRELGQ----MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245

Query: 376 NQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEIN 433
           N LTG I SS L +L +++ L L  N     IP S   +F+  KL   D  +N ++GEI 
Sbjct: 246 NNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP 301

Query: 434 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 493
           E        QL++L                                              
Sbjct: 302 EL-----VIQLQNL---------------------------------------------- 310

Query: 494 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
            E L+L +++  G   + + S  RL+ L + +N F G IP  +G                
Sbjct: 311 -EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG---------------- 353

Query: 554 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 613
                    N   L  LDLS N LTGEIP+ L     NL  L L +NSL+G I   + + 
Sbjct: 354 ------KHNN---LTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGAC 403

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
           R+LR + L+ N F GE+P   +K   +  L ++NNNL G+I     ++  LQ + + +N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFN 732
             G +P +      L+ LD+S N  SG++P     LS + Q+ LS+N L G++ +    +
Sbjct: 464 FFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSS 521

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
           C  LV+LDLS+N L+G IP     +  LS L+L+ N L GE+P  L  +  L  +++S N
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Query: 793 NLHGLIPS 800
           +LHG +PS
Sbjct: 582 HLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  166 bits (423), Expect = 5e-42
 Identities = 202/711 (28%), Positives = 312/711 (43%), Gaps = 156/711 (21%)

Query: 25  LLRLKHFFTDPYD-----KGATDCCQWEGVECSNTTGRVIGLYLS-ETYSGEYWYLNASL 78
           LL  K    DP         + D C W+G+ C+N++ RV+ + LS +  SG+   +++++
Sbjct: 34  LLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSS-RVVSIDLSGKNISGK---ISSAI 89

Query: 79  FT-PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 137
           F  P+  +++++LS N                        L G + ++   +S    SSL
Sbjct: 90  FRLPY--IQTINLSNNQ-----------------------LSGPIPDDIFTTS----SSL 120

Query: 138 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 197
             L+LS+N   GSI      S+ NLE LD+++N                     LSG   
Sbjct: 121 RYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM--------------------LSG--- 154

Query: 198 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL------HI 251
               ++   +GSF SL  L L  N     +  +  L N T+LE+LTL  + L       +
Sbjct: 155 ----EIPNDIGSFSSLKVLDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIPREL 208

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
             ++S+  I+    NLS       G L+        SL HLD                  
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLT--------SLNHLD------------------ 242

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
               L Y +L+G          +   L  L +LQ L++  N L G +P  + +   L  L
Sbjct: 243 ----LVYNNLTGP---------IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEIN 429
           D+S N L+G I    ++ L ++E L L +N+F  +IPV+L  L    +L++    +N+ +
Sbjct: 290 DLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSL---PRLQVLQLWSNKFS 345

Query: 430 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 489
           GEI                           PK L   + L   +LS   + GE P  L  
Sbjct: 346 GEI---------------------------PKNLGKHNNLTVLDLSTNNLTGEIPEGLC- 377

Query: 490 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF-NI 548
           ++  L  L L ++SL G     + + + LR + + +N+F G +P E   +   LVYF +I
Sbjct: 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL--PLVYFLDI 435

Query: 549 SMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFS 608
           S N L G I S   ++  LQ L L+ NK  G +PD        LE L LS N   G +  
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPR 493

Query: 609 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
           ++ SL  L  L L  N   GEIP  LS C  L  L L++N LSG+IP     +  L  + 
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 669 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
           + +N L G IP     ++SL  ++IS N++ GSLPS    L+I    ++ N
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGN 604

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 84.5 bits (209), Expect = 1e-16
 Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 8/119 (6%)

Query: 863 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 922
           GL L    L G IP  I  L  +Q++NLS N++ G IP +  ++  +E LDLSYN  +G 
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 923 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTA----QFATFNKSSYDGNPFLCGLP-LPIC 976
           IP  L  L +L I  +  N+LSG++P          A+FN   +  N  LCG+P L  C
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.6 bits (160), Expect = 9e-11
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 566 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 625
           F+  L L N  L G IP+ ++    +L+ ++LS NS++G+I   + S+ +L  L L  N 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           F G IP+SL + +SL+ L LN N+LSG++P  LG
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 1e-10
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 24/105 (22%)

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 733
           L G IP +  +L  LQ +++S N+I G++P                         +  + 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPP------------------------SLGSI 465

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 778
           +SL  LDLSYN  NGSIP+ +  L+ L  LNL  N+L G VP  L
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.9 bits (153), Expect = 6e-10
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 556
           L L N  L G     I   + L+ +++S N+ +G+IP  +G I  SL   ++S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGS 481

Query: 557 IPSSFGNVIFLQFLDLSNNKLTGEIP 582
           IP S G +  L+ L+L+ N L+G +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 27/77 (35%), Positives = 47/77 (61%)

Query: 628 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 687
           G IP  +SK   L+ + L+ N++ G IP  LG++  L+ + +  N   G IP    +L S
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 688 LQILDISDNNISGSLPS 704
           L+IL+++ N++SG +P+
Sbjct: 492 LRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 34/85 (40%), Positives = 48/85 (56%)

Query: 595 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           L L N  L+G I + I  LR+L+ + L GN   G IP SL   +SL+ L L+ N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIP 679
           P  LG L  L+ + +  N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           L + N   +G IP +I   L  L   N+S N++ G+IP S G++  L+ LDLS N   G 
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHI 606
           IP+ L     +L  L+L+ NSL G +
Sbjct: 482 IPESLGQ-LTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 59.8 bits (145), Expect = 5e-09
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 885 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
           I  L L +  L G IP   S LRH++S++LS N + G IP  L  + +L +  ++YN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 945 GKIPEWTAQFATFNKSSYDGNPFLCG 970
           G IPE   Q  +    + +GN  L G
Sbjct: 480 GSIPESLGQLTSLRILNLNGN-SLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
           L HLQ + +  N +RG++P  L + TSL +LD+S+N   GSI  S L  LTS+  L L+ 
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLNG 499

Query: 401 NHF--RIPVSL 409
           N    R+P +L
Sbjct: 500 NSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.8 bits (132), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 798
           L L    L G IP+ I  L  L  +NL+ N++ G +P  L  +  L++LDLS N+ +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 799 P 799
           P
Sbjct: 483 P 483

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 47/78 (60%)

Query: 736 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           L +++LS N + G+IP  +  ++ L  L+L++N+  G +P  L +L  L++L+L+ N+L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 796 GLIPSCFDNTTLHESYNN 813
           G +P+      LH +  N
Sbjct: 504 GRVPAALGGRLLHRASFN 521

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 8e-07
 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 14/223 (6%)

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
           L   T L  L L N+++     L       L+ LD+S+N  +  +P  + + LP+L   +
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLD 169

Query: 548 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
           +S N L   +P    N+  L  LDLS NK++ ++P  + +    LE L LSNN     I 
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-ALEELDLSNN----SII 222

Query: 608 SRIFSLRNLRWLLLEG--NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
             + SL NL+ L      N+ + ++P+S+   S+L+ L L+NN +S      LG+L  L+
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLR 280

Query: 666 HIVMPKNHLEGPIPVEF-CRLDSLQILDISDNNISGSLPSCFY 707
            + +  N L   +P+     L    +L++     +  L     
Sbjct: 281 ELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSI 323

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 714 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 770
           + LS N L   + +G F    +L  LDLS N L    P+   GL  L  L+L+ NNL
Sbjct: 5   LDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.7 bits (124), Expect = 2e-06
 Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 53/141 (37%)

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 819
           +  L L +  L G +P  + +L  LQ ++LS N++ G IP    +               
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--------------- 464

Query: 820 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 879
                  I+                                L  LDLS N   G IP  +
Sbjct: 465 -------ITS-------------------------------LEVLDLSYNSFNGSIPESL 486

Query: 880 GNLTRIQTLNLSHNNLTGTIP 900
           G LT ++ LNL+ N+L+G +P
Sbjct: 487 GQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.8 bits (107), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 864 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 919
           LDLS N+L   IP      L  ++ L+LS NNLT   P  FS L  + SLDLS N L
Sbjct: 5   LDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 82/337 (24%), Positives = 130/337 (38%), Gaps = 20/337 (5%)

Query: 284 PHFKSLEHLDMRFARIAL----NTSFLQIIGESMPSLKYLSLS-GSTLGTNSSRILDQGL 338
                   L     R  L      +  Q I  + P     S++        SS  L    
Sbjct: 4   AENLLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLP 63

Query: 339 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 398
             L+ L  L + +     SL         L +  +  N      + S L+ LT++  L L
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 399 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 458
            NN+    +        S LK  D  +N+I    +   +L     LK+L LS N  D   
Sbjct: 124 DNNNI-TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLP---NLKNLDLSFN--DLSD 177

Query: 459 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 518
            PK L +   L   +LS  K I + P   +E  + LE L L N+S+       + + K L
Sbjct: 178 LPKLLSNLSNLNNLDLSGNK-ISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 519 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
             L++SNN  +          L +L   ++S N +  S  SS G++  L+ LDLS N L+
Sbjct: 235 SGLELSNNKLEDLPESIGN--LSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLS 290

Query: 579 GEIPDHLAM--CCVNLEFLSLSNNSLKGHIFSRIFSL 613
             +P    +      L  L L+  +L+  + S + + 
Sbjct: 291 NALPLIALLLLLLELLLNLLLTLKALELKLNSILLNN 327

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 25/60 (41%), Positives = 30/60 (50%)

Query: 735 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
           +L +LDLS N L         GL  L  L+L+ NNL    P     L  L+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 73/306 (23%), Positives = 123/306 (40%), Gaps = 57/306 (18%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEG--LERLSRLSKLKKLDLRGN-LCNNS--ILSS 130
           AS   P   L+ L LS N            L+ L++   L++LDL  N L  +   +L S
Sbjct: 44  ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103

Query: 131 VARLSSLTSLHLSHNILQGSIDAKEFDSL----SNLEELDINDNEIDNV---EVSRGYRG 183
           + R SSL  L L++N L           L      LE+L +  N ++      +++  R 
Sbjct: 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA 163

Query: 184 LRKLKSLDLSGVGIRDGN--KLLQSMGSFPSLNTLHLESNNFT--------ATLTTTQEL 233
            R LK L+L+  GI D     L + + +  +L  L L +N  T         TL + +  
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK-- 221

Query: 234 HNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 289
               +LE L L D++L      +L  ++ S   SL  LS+S  ++      +        
Sbjct: 222 ----SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI-TDDGAK-------- 268

Query: 290 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ-GLCPLAHLQELY 348
                            +++ E   SL  L L G+  G   +++L +  L P   L+ L+
Sbjct: 269 --------------DLAEVLAE-KESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313

Query: 349 IDNNDL 354
           + ++  
Sbjct: 314 VKDDSF 319

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 46.9 bits (111), Expect = 4e-05
 Identities = 60/208 (28%), Positives = 100/208 (48%), Gaps = 9/208 (4%)

Query: 588 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 647
             ++L+ LS S  S      + + +L  L  L L  N     I   L + ++L  L L+N
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNIS-ELLELTNLTSLDLDN 125

Query: 648 NNLSGKIPRWLGNLK-GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 706
           NN++  IP  +G LK  L+ + +  N +E  +P     L +L+ LD+S N++S       
Sbjct: 126 NNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLS 183

Query: 707 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 766
              ++  + LS N +            S+L  LDLS N +   +   +  L  LS L L+
Sbjct: 184 NLSNLNNLDLSGNKI--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELS 240

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
           +N LE ++P  +  L+ L+ LDLS+N +
Sbjct: 241 NNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.8 bits (99), Expect = 5e-05
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
           +L SL LS+N L   I    F  L NL+ LD++ N + ++     + GL  L+SLDLSG
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSIS-PEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 7/42 (16%)

Query: 18 LDHERFALLRLKHFFTDPY-------DKGATDCCQWEGVECS 52
          L+ +R ALL  K              +  ++D C W GV C 
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 67/260 (25%), Positives = 97/260 (37%), Gaps = 82/260 (31%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMC------CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620
           L+ L LS N+ TG IP  L            L+ L LS+N+L                  
Sbjct: 53  LKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD--------------- 96

Query: 621 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 680
             G   +    +SL + SSL+ L LNNN L  +  R L   KGL+ +             
Sbjct: 97  --GCGVL----ESLLRSSSLQELKLNNNGLGDRGLRLLA--KGLKDLP------------ 136

Query: 681 EFCRLDSLQILDISDNNISGSLPSCFYPLS--------IKQVHLSKNMLHGQ----LKEG 728
               L+    L +  N + G+  SC   L+        +K+++L+ N +       L EG
Sbjct: 137 --PALEK---LVLGRNRLEGA--SCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 729 TFFNCSSLVTLDLSYNYLN--------GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ--- 777
              NC +L  LDL+ N L          ++         L  LNL  NNL  +       
Sbjct: 189 LKANC-NLEVLDLNNNGLTDEGASALAETLASLK----SLEVLNLGDNNL-TDAGAAALA 242

Query: 778 ---LCRLNQLQLLDLSDNNL 794
              L     L  L LS N++
Sbjct: 243 SALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 48/166 (28%)

Query: 18  LDHERFALLRLKHFFTDPYDKGAT-DCC-----QWEGVECS--NTTGRVIGLYLSETYSG 69
           L  E  AL  LK     P   G   D C      W G +C   +T G+            
Sbjct: 370 LLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGK------------ 417

Query: 70  EYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGL-----ERLSRLSKLKKLDLRGNLCN 124
             W+++            L L         +N+GL       +S+L  L+ ++L GN   
Sbjct: 418 --WFIDG-----------LGL---------DNQGLRGFIPNDISKLRHLQSINLSGNSIR 455

Query: 125 NSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
            +I  S+  ++SL  L LS+N   GSI       L++L  L++N N
Sbjct: 456 GNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query: 884 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 943
            +++L+LS+N LT      F  L +++ LDLS N L+   P     L +L    ++ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
           L+ LDLSNN+LT  IPD       NL+ L LS N+L   I    FS L +LR L L GN+
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 626 F 626
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 21/231 (9%)

Query: 238 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 297
             E L  + ++  +  L  +  +      L     +              SL+ L +   
Sbjct: 6   KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK----ALASALRPQPSLKELCLSLN 61

Query: 298 RIALNTSFLQIIGESMPS---LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
                   LQ + + +     L+ L LS + LG +   +L + L   + LQEL ++NN L
Sbjct: 62  ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGL 120

Query: 355 RGSLPWCLA-----NTTSLRILDVSFNQLTGSIS---SSPLVHLTSIEELRLSNNHFR-- 404
                  LA        +L  L +  N+L G+     +  L     ++EL L+NN     
Sbjct: 121 GDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180

Query: 405 -IPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSN 452
            I    E L  +  L++ D  NN +   G    + +L     L+ L+L  N
Sbjct: 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%)

Query: 615 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 674
           NL+ L L  N        +     +LK L L+ NNL+   P     L  L+ + +  N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 639 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 698
           +LK L L+NN L+         L  L+ + +  N+L    P  F  L SL+ LD+S NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
           +L+ L + NN L            +L++LD+S N LT SIS      L S+  L LS N+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 403 F 403
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 15/255 (5%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF-FNCSSLVTLDL 741
             L  L  LD+   +   SL      L++  +      L+      +     ++L +LDL
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 742 SYNYLNGSIPDWIDGL-SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 800
             N +   IP  I  L S L  L+L+ N +E  +P  L  L  L+ LDLS N+L  L   
Sbjct: 124 DNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL 181

Query: 801 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL 860
             + + L+    + +   K       I     S  +++        + +        L  
Sbjct: 182 LSNLSNLNNLDLSGN---KISDLPPEIELL--SALEELDLSNNSIIELL---SSLSNLKN 233

Query: 861 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           L+GL+LS NKL   +P  IGNL+ ++TL+LS+N ++     +  +L ++  LDLS N LS
Sbjct: 234 LSGLELSNNKLED-LPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLS 290

Query: 921 GKIPRQLVDLNTLAI 935
             +P   + L  L +
Sbjct: 291 NALPLIALLLLLLEL 305

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 69/320 (21%), Positives = 123/320 (38%), Gaps = 22/320 (6%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 143
            L SLDL+ N +        +  L  L+ L  LDL  N   +         S+L  L LS
Sbjct: 94  PLPSLDLNLNRLRSN-----ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS 148

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 203
            N ++         +L NL+ LD++ N++   ++ +    L  L +LDLSG  I D   L
Sbjct: 149 DNKIESLPSPLR--NLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKISD---L 201

Query: 204 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 263
              +    +L  L L +N+    L++   L N  NL  L L ++ L   L +SIG++  +
Sbjct: 202 PPEIELLSALEELDLSNNSIIELLSS---LSNLKNLSGLELSNNKL-EDLPESIGNL-SN 256

Query: 264 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI---ALNTSFLQIIGESMPSLKYLS 320
           L+ L +S  +++ + S     + + L+      +           L  +  ++       
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKAL 316

Query: 321 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 380
                    ++ IL  G    +  + L I  +           + ++L    V      G
Sbjct: 317 ELKLNSILLNNNILSNGE--TSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIG 374

Query: 381 SISSSPLVHLTSIEELRLSN 400
           S+      H+  + E    N
Sbjct: 375 SLLDLVKKHVNQLLEKVNYN 394

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.002
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 591 NLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 649
           NL+ L LSNN L   I    F  L NL+ L L GN+     P++ S   SL+ L L+ NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 650 L 650
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.003
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 493 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 552
            L+ + L  +S+ G     + S   L  LD+S N+F G IP  +G  L SL   N++ N+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLNGNS 501

Query: 553 LDGSIPSSFG 562
           L G +P++ G
Sbjct: 502 LSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 517 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576
            L+ LD+SNN     IP      LP+L   ++S N L    P +F  +  L+ LDLS N 
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 577 L 577
           L
Sbjct: 60  L 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1056
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.6
PLN03150	623	hypothetical protein; Provisional	99.54
PLN03150	623	hypothetical protein; Provisional	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.02
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.7
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG4341	483	consensus F-box protein containing LRR [General fu	98.66
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.57
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.38
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG4341	483	consensus F-box protein containing LRR [General fu	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.11
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.44
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.11
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.97
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.74
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.49
KOG4308	478	consensus LRR-containing protein [Function unknown	94.46
KOG4308	478	consensus LRR-containing protein [Function unknown	94.05
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.83
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.47
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.66
smart00370	26	LRR Leucine-rich repeats, outliers.	85.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.5
KOG0473	326	consensus Leucine-rich repeat protein [Function un	83.76
smart00370	26	LRR Leucine-rich repeats, outliers.	83.22
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.22

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-68  Score=683.21  Aligned_cols=348  Identities=37%  Similarity=0.557  Sum_probs=261.4

Q ss_pred             EEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccC
Q 001547          520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN  599 (1056)
Q Consensus       520 ~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~  599 (1056)
                      +|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|.                
T Consensus       264 ~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~----------------  326 (968)
T PLN00113        264 YLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV----------------  326 (968)
T ss_pred             EEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh----------------
Confidence            3333444444444444443 56666666666666666666665666666666655555544444                


Q ss_pred             CcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCc
Q 001547          600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP  679 (1056)
Q Consensus       600 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p  679 (1056)
                               .+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|.++..+++|+.|++++|.+.+.+|
T Consensus       327 ---------~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        327 ---------ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             ---------hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence                     44444455555555555555555555556666666666666666666666666666666666666666666


Q ss_pred             ccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCC
Q 001547          680 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ  759 (1056)
Q Consensus       680 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~  759 (1056)
                      ..+..+++|+.|++++|++++.+|                       . .+..+++|+.|++++|.+++.+|..+..+++
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p-----------------------~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  453 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELP-----------------------S-EFTKLPLVYFLDISNNNLQGRINSRKWDMPS  453 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECC-----------------------h-hHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence            666666666666666666654333                       2 5666777777777777777777777777888


Q ss_pred             CCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001547          760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL  839 (1056)
Q Consensus       760 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  839 (1056)
                      |+.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++                                 
T Consensus       454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~---------------------------------  499 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS---------------------------------  499 (968)
T ss_pred             CcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh---------------------------------
Confidence            8888888888887777665 358899999999999999888776644                                 


Q ss_pred             eeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccC
Q 001547          840 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  919 (1056)
Q Consensus       840 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  919 (1056)
                                          .|++|+|++|++.+.+|+.++++++|++|+|++|.++|.+|..|+++++|+.|||++|++
T Consensus       500 --------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        500 --------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             --------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc
Confidence                                789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCeEEcccCcccccCCCcccccCCCCccccCCCCCCCCCC
Q 001547          920 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  972 (1056)
Q Consensus       920 ~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  972 (1056)
                      +|.+|..+..+++|+++++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus       560 ~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        560 SGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence            999999999999999999999999999998 7899999999999999999864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.4e-56  Score=572.01  Aligned_cols=519  Identities=31%  Similarity=0.508  Sum_probs=386.9

Q ss_pred             CCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEE
Q 001547          342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  421 (1056)
Q Consensus       342 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  421 (1056)
                      .+++.|++++|.+.+.+|..|..+++|+.|++++|.++|.+|...+..+++|++|++++|.+++.+|.   ..+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            47889999999999888888999999999999999998888655566899999999999988876654   234555555


Q ss_pred             eccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCC
Q 001547          422 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  501 (1056)
Q Consensus       422 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  501 (1056)
                      ++++|.+.+                           .+|..+..+++|++|++++|.+.+.+|                 
T Consensus       146 ~Ls~n~~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~p-----------------  181 (968)
T PLN00113        146 DLSNNMLSG---------------------------EIPNDIGSFSSLKVLDLGGNVLVGKIP-----------------  181 (968)
T ss_pred             ECcCCcccc---------------------------cCChHHhcCCCCCEEECccCcccccCC-----------------
Confidence            555554432                           123333444444444444444444444                 


Q ss_pred             CcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCcc
Q 001547          502 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  581 (1056)
Q Consensus       502 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  581 (1056)
                              ..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+
T Consensus       182 --------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        182 --------NSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             --------hhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence                    44445555555555555555555554443 555666666666555555555555666666666666555555


Q ss_pred             chHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCC
Q 001547          582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  661 (1056)
Q Consensus       582 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  661 (1056)
                      |..+ ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+
T Consensus       253 p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  331 (968)
T PLN00113        253 PSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL  331 (968)
T ss_pred             ChhH-hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC
Confidence            5544 245566666666666655555555566666666666666666666666666666666666666666666666666


Q ss_pred             CCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCC-CCcccEEEcCCcccccccCcccccCCCCccEEE
Q 001547          662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD  740 (1056)
Q Consensus       662 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~  740 (1056)
                      ++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+. ..+++.+++++|.+.+.+|. .+..+++|+.|+
T Consensus       332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~  410 (968)
T PLN00113        332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVR  410 (968)
T ss_pred             CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEE
Confidence            6666666666666666666666666666666666666666555443 24566666666666667776 788999999999


Q ss_pred             ccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCC
Q 001547          741 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP  820 (1056)
Q Consensus       741 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~  820 (1056)
                      +++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++.                
T Consensus       411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~----------------  474 (968)
T PLN00113        411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS----------------  474 (968)
T ss_pred             CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------
Confidence            9999999999999999999999999999999999999999999999999999999988875532                


Q ss_pred             CccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccccc
Q 001547          821 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP  900 (1056)
Q Consensus       821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  900 (1056)
                                                            +.|+.||+++|++++.+|..|.++++|+.|+|++|++++.+|
T Consensus       475 --------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        475 --------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             --------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence                                                  268999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCCcccccCCCCccccCCCCCCCCCC
Q 001547          901 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  972 (1056)
Q Consensus       901 ~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~  972 (1056)
                      ..++++++|++|||++|+++|.+|..+..+++|+.|++++|+++|.+|.....+..+....+.+|+..+..|
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            999999999999999999999999999999999999999999999999877788888999999999887665

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-38  Score=335.85  Aligned_cols=377  Identities=24%  Similarity=0.287  Sum_probs=280.7

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceec
Q 001547          542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  621 (1056)
Q Consensus       542 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  621 (1056)
                      .-+.|++++|.+..+.+..|.++++|+++++.+|.++ .||.... ...+|+.|+|.+|.|+.+-.+.+..++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            3456677777776666666777777777777777776 6665432 3445777777777777666666777777777777


Q ss_pred             ccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCccc
Q 001547          622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  701 (1056)
Q Consensus       622 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  701 (1056)
                      +.|.++..-...|..-.++++|+|++|.|+..-...|..+.+|.+|.|+.|+++...+..|.+++.|+.|+|..|++.-.
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            77777755445666666777777777777766666677777777777777777766666777777777777777776533


Q ss_pred             CCCCC-CCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccC
Q 001547          702 LPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR  780 (1056)
Q Consensus       702 ~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  780 (1056)
                      --..| +.++|+.|.+..|.+. .+.++.|..+.+++.|+|+.|+++..-..|+.++++|+.|++++|.|...-++.+..
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence            22222 3457777777777775 455668888888999999999888777788888899999999999888888888888


Q ss_pred             CCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccc
Q 001547          781 LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL  860 (1056)
Q Consensus       781 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  860 (1056)
                      .++|++|+|++|+++...+..|..+.                                                     .
T Consensus       316 tqkL~~LdLs~N~i~~l~~~sf~~L~-----------------------------------------------------~  342 (873)
T KOG4194|consen  316 TQKLKELDLSSNRITRLDEGSFRVLS-----------------------------------------------------Q  342 (873)
T ss_pred             cccceeEeccccccccCChhHHHHHH-----------------------------------------------------H
Confidence            88999999999988887777765543                                                     6


Q ss_pred             cCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccc---cccCCCCCCEEEccCccCcccCCccccCCCCCCeEE
Q 001547          861 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI  937 (1056)
Q Consensus       861 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~  937 (1056)
                      |++|+|++|.+...-...|..+++|++|||++|.+++.|.+   .|..|++|+.|+|.+|+|...--.+|..+..|+.||
T Consensus       343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            88888888888877677788888888888888888887764   477788888888888888855557888888888888


Q ss_pred             cccCcccccCCCcccccCCCCccccCCCCCCCCCCCCC
Q 001547          938 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI  975 (1056)
Q Consensus       938 ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~  975 (1056)
                      +.+|.+...-|..+.++ .++..-+..-.++|+|.+.|
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W  459 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW  459 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence            88888877666656666 66667777777889887654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=321.42  Aligned_cols=365  Identities=23%  Similarity=0.222  Sum_probs=290.8

Q ss_pred             CccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEe
Q 001547          343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD  422 (1056)
Q Consensus       343 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  422 (1056)
                      .-+.|++++|.+...-+..|.++++|+.+++..|.++ .| |...+....|+.|+|.+|.++ .+..+.+.-++.|+.+|
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            4567999999999888888899999999999999987 77 554555556999999999887 56667777788888888


Q ss_pred             ccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCC
Q 001547          423 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND  502 (1056)
Q Consensus       423 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n  502 (1056)
                      ++.|.|+.+..                                                    .-+..-.++++|+|++|
T Consensus       156 LSrN~is~i~~----------------------------------------------------~sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  156 LSRNLISEIPK----------------------------------------------------PSFPAKVNIKKLNLASN  183 (873)
T ss_pred             hhhchhhcccC----------------------------------------------------CCCCCCCCceEEeeccc
Confidence            88887763321                                                    11223456778888888


Q ss_pred             cCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccc
Q 001547          503 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP  582 (1056)
Q Consensus       503 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~  582 (1056)
                      .++......|..+.+|..|.|+.|+++ .+|...|+.+++|+.|+|..|+|.-..-..|.++++|+.|.|..|.+. .+.
T Consensus       184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~  261 (873)
T KOG4194|consen  184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD  261 (873)
T ss_pred             cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence            888777788888889999999999998 899999988999999999999998665678999999999999999998 888


Q ss_pred             hHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCC
Q 001547          583 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK  662 (1056)
Q Consensus       583 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  662 (1056)
                      +..|..+.++++|+|+.|+++..-..++.+++.|+.|++++|.|..+-++++..+++|++|+|++|+++...+..|..+.
T Consensus       262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence            88888999999999999999988888999999999999999999988899999999999999999999988888999999


Q ss_pred             CCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCC----CCCcccEEEcCCcccccccCcccccCCCCccE
Q 001547          663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF----YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT  738 (1056)
Q Consensus       663 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  738 (1056)
                      .|++|.|+.|.+.......|..+++|+.|||++|.++..+.+..    +.++|++|++.+|++. .|+..+|.++.+|+.
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEH  420 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccce
Confidence            99999999999987777888999999999999999987665432    1234555555555543 344445555555555


Q ss_pred             EEccCccCCcccchhhhccCCCCEEEcC
Q 001547          739 LDLSYNYLNGSIPDWIDGLSQLSHLNLA  766 (1056)
Q Consensus       739 L~L~~n~l~~~~p~~~~~l~~L~~L~L~  766 (1056)
                      |||.+|.|..+.|++|..+ .|+.|.+.
T Consensus       421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             ecCCCCcceeecccccccc-hhhhhhhc
Confidence            5555555554555555544 44444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-38  Score=321.86  Aligned_cols=475  Identities=27%  Similarity=0.386  Sum_probs=297.6

Q ss_pred             CCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEE
Q 001547          342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF  421 (1056)
Q Consensus       342 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  421 (1056)
                      ..|+.+.+++|.+....+ .+.++..|++|++++|+++ .+ |.+++.+..++.++.+.|++. .+| ..+..+.+|..+
T Consensus        45 v~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp-~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELP-EQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchhhccH-hhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hcc-HHHhhhhhhhhh
Confidence            456777788887764443 4677778888888888876 66 667777777777777777665 222 123333444444


Q ss_pred             eccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCC
Q 001547          422 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN  501 (1056)
Q Consensus       422 ~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~  501 (1056)
                      +++.|.+                                                   . ++|+. ++.+..++.++..+
T Consensus       120 ~~s~n~~---------------------------------------------------~-el~~~-i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen  120 DCSSNEL---------------------------------------------------K-ELPDS-IGRLLDLEDLDATN  146 (565)
T ss_pred             hccccce---------------------------------------------------e-ecCch-HHHHhhhhhhhccc
Confidence            4444333                                                   2 22333 23566667777777


Q ss_pred             CcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCcc
Q 001547          502 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI  581 (1056)
Q Consensus       502 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  581 (1056)
                      |+++. .+..+..+.++..+++.+|.+. ..|..... ++.|+++|..+|.++ .+|+.++.+.+|..|++..|++. .+
T Consensus       147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l  221 (565)
T KOG0472|consen  147 NQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL  221 (565)
T ss_pred             ccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence            77663 2344556666667777777766 44544444 666777777666665 56666777777777777777766 56


Q ss_pred             chHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCC
Q 001547          582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL  661 (1056)
Q Consensus       582 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l  661 (1056)
                      |+  |.+|..|++++++.|++.-...+....++++.+||+++|++. ..|+.+..+.+|++||+++|.++ .+|..++++
T Consensus       222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            62  235666666777666666333333336666666677776666 55666666666666777666666 455566666


Q ss_pred             CCCcEEEcCCCcccCCCcccccCCCC---CcEEE-------cccC---------cCcccCCCCCCCCcccEEEcCCcccc
Q 001547          662 KGLQHIVMPKNHLEGPIPVEFCRLDS---LQILD-------ISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH  722 (1056)
Q Consensus       662 ~~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~-------Ls~n---------~l~~~~p~~~~~~~L~~L~l~~n~~~  722 (1056)
                       .|+.|.+.+|.+..+-. .+-+...   |++|.       ++.-         ...+..|......+.+.|++++-+++
T Consensus       298 -hL~~L~leGNPlrTiRr-~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt  375 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRR-EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT  375 (565)
T ss_pred             -eeeehhhcCCchHHHHH-HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence             66666666666542211 1111000   11110       0000         00111222222335666777766664


Q ss_pred             cccCcccccCCC--CccEEEccCccCCcccchhhhccCCCCE-EEcCCCcccccCChhccCCCCCCEEEccCCcCcccCC
Q 001547          723 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP  799 (1056)
Q Consensus       723 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  799 (1056)
                       .+|...|..-.  -.+..+++.|++. ++|..+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|
T Consensus       376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence             45554443322  2567788888887 66776666655554 34444444 477888888888888888887765 445


Q ss_pred             ccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhc
Q 001547          800 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI  879 (1056)
Q Consensus       800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  879 (1056)
                      ..++.+.                                                     .|+.||+|.|++. .+|..+
T Consensus       452 ~e~~~lv-----------------------------------------------------~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  452 EEMGSLV-----------------------------------------------------RLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             hhhhhhh-----------------------------------------------------hhheecccccccc-cchHHH
Confidence            5444432                                                     5788888888887 788887


Q ss_pred             cCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCccc
Q 001547          880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS  944 (1056)
Q Consensus       880 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~  944 (1056)
                      ..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|++|++++|++.
T Consensus       478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            77777877777778888777777888888888888888887 78888888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1.1e-37  Score=317.21  Aligned_cols=457  Identities=29%  Similarity=0.394  Sum_probs=335.7

Q ss_pred             CCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCC
Q 001547          337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS  416 (1056)
Q Consensus       337 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  416 (1056)
                      .+.++..|.+|++++|++. ..|.+++.+..++.++.++|+++ .+ |..++.+.+|..++.++|.+.. ++ +.++.+-
T Consensus        63 dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~l-p~~i~s~~~l~~l~~s~n~~~e-l~-~~i~~~~  137 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-EL-PEQIGSLISLVKLDCSSNELKE-LP-DSIGRLL  137 (565)
T ss_pred             hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hc-cHHHhhhhhhhhhhccccceee-cC-chHHHHh
Confidence            4556777888888888876 55667788888888888888876 66 6778888888888888887762 22 1344455


Q ss_pred             CccEEeccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcE
Q 001547          417 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF  496 (1056)
Q Consensus       417 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~  496 (1056)
                      .|+.++..+|.+..                            .|..+.                         ++.++..
T Consensus       138 ~l~dl~~~~N~i~s----------------------------lp~~~~-------------------------~~~~l~~  164 (565)
T KOG0472|consen  138 DLEDLDATNNQISS----------------------------LPEDMV-------------------------NLSKLSK  164 (565)
T ss_pred             hhhhhhcccccccc----------------------------CchHHH-------------------------HHHHHHH
Confidence            55555555544431                            222222                         4555555


Q ss_pred             EecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCcc
Q 001547          497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  576 (1056)
Q Consensus       497 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  576 (1056)
                      +++.+|.+....+..+. ++.|+++|...|.+. .+|..++. +.+|+.|++.+|++. ..| .|.++..|+++.++.|.
T Consensus       165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ  239 (565)
T ss_pred             hhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence            55555555544443333 777888888888776 88988886 899999999999988 566 78999999999999999


Q ss_pred             CCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc
Q 001547          577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR  656 (1056)
Q Consensus       577 l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  656 (1056)
                      +. .+|+....++.++..||+.+|+++ ..|+.+.-+.+|.+||+++|.++ .+|..++++ +|+.|-+.+|++.. +..
T Consensus       240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr  314 (565)
T KOG0472|consen  240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRR  314 (565)
T ss_pred             HH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHH
Confidence            98 899998888999999999999998 68888999999999999999998 678889999 89999999998752 222


Q ss_pred             cccCCCC---CcEEE-------cCCC---cc-cCC-Cc---ccccCCCCCcEEEcccCcCcccCCCCCCCC---cccEEE
Q 001547          657 WLGNLKG---LQHIV-------MPKN---HL-EGP-IP---VEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVH  715 (1056)
Q Consensus       657 ~l~~l~~---L~~L~-------l~~n---~l-~~~-~p---~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~---~L~~L~  715 (1056)
                      .+-+...   |++|.       ++.-   .- ++. .+   .....+.+.+.|++++-+++....+.|...   -.+.++
T Consensus       315 ~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vn  394 (565)
T KOG0472|consen  315 EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVN  394 (565)
T ss_pred             HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEe
Confidence            1211111   11110       1110   00 000 11   122345678889999888885444444433   377889


Q ss_pred             cCCcccccccCcccccCCCCccE-EEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcC
Q 001547          716 LSKNMLHGQLKEGTFFNCSSLVT-LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL  794 (1056)
Q Consensus       716 l~~n~~~~~~~~~~~~~~~~L~~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l  794 (1056)
                      ++.|++. ++|. .+..+..+.+ +++++|.++ .+|..+..+++|..|+|++|.+. .+|..++.+..|+.||++.|+|
T Consensus       395 fskNqL~-elPk-~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF  470 (565)
T KOG0472|consen  395 FSKNQLC-ELPK-RLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF  470 (565)
T ss_pred             cccchHh-hhhh-hhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc
Confidence            9999985 6777 5555555544 566666665 78889999999999999999998 8899999999999999999988


Q ss_pred             cccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCC
Q 001547          795 HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH  874 (1056)
Q Consensus       795 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  874 (1056)
                      . .+|.+.....                                                     .++.+-.++|++...
T Consensus       471 r-~lP~~~y~lq-----------------------------------------------------~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  471 R-MLPECLYELQ-----------------------------------------------------TLETLLASNNQIGSV  496 (565)
T ss_pred             c-cchHHHhhHH-----------------------------------------------------HHHHHHhcccccccc
Confidence            6 4455443322                                                     355566677898866


Q ss_pred             CchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547          875 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  920 (1056)
Q Consensus       875 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  920 (1056)
                      .|..+.++.+|+.|||.+|.+. .+|..++++++|+.|++++|+++
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            6677999999999999999999 88999999999999999999998

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=1.1e-32  Score=309.47  Aligned_cols=402  Identities=26%  Similarity=0.322  Sum_probs=241.6

Q ss_pred             CCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCC
Q 001547          337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS  416 (1056)
Q Consensus       337 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~  416 (1056)
                      .+.+-..++.|+++.|-+....-+...+.-+|+.||+++|.+. .. |..+..+.+|+.|+++.|.+. .+| ....++.
T Consensus        16 ~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~   91 (1081)
T KOG0618|consen   16 QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMR   91 (1081)
T ss_pred             hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhh
Confidence            3333445777888887655433334455666888888888876 66 677888888888888888776 344 3466777


Q ss_pred             CccEEeccCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcE
Q 001547          417 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF  496 (1056)
Q Consensus       417 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~  496 (1056)
                      +|+++.+.+|.+.                            ..|..+..+++|+.++++.|.+. .+|..+ ..++.++.
T Consensus        92 ~l~~lnL~~n~l~----------------------------~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~~~  141 (1081)
T KOG0618|consen   92 NLQYLNLKNNRLQ----------------------------SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAEEE  141 (1081)
T ss_pred             cchhheeccchhh----------------------------cCchhHHhhhcccccccchhccC-CCchhH-HhhhHHHH
Confidence            7777777777654                            24566666777777777777654 556553 36677777


Q ss_pred             EecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCcc
Q 001547          497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK  576 (1056)
Q Consensus       497 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  576 (1056)
                      +..++|.....    ++. ..++.+++..|.+.+.++.++.. +..  .|+|++|.+.   -..+..+.+|+.+....|+
T Consensus       142 ~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~  210 (1081)
T KOG0618|consen  142 LAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQ  210 (1081)
T ss_pred             Hhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcc
Confidence            77777722111    111 11666777777777666666543 333  5777777765   2234566677777777777


Q ss_pred             CCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc
Q 001547          577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR  656 (1056)
Q Consensus       577 l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~  656 (1056)
                      +. .+..    ..++|+.|+.++|.++...+.  ..-.+|++++++.|+++ .+|.+++.|.+|+.++..+|.+. .+|.
T Consensus       211 ls-~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~  281 (1081)
T KOG0618|consen  211 LS-ELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPL  281 (1081)
T ss_pred             cc-eEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHH
Confidence            65 3221    346677777777776632221  12246777777777776 34567777777777777777774 5666


Q ss_pred             cccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCC---CCcccEEEcCCcccccccCcccccCC
Q 001547          657 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNC  733 (1056)
Q Consensus       657 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~  733 (1056)
                      .+...++|+.|.+..|.+. -+|....++++|++|||..|++. .+|..+.   ..++..+..+.|.+. ..|...=...
T Consensus       282 ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~  358 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNH  358 (1081)
T ss_pred             HHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhh
Confidence            6666777777777777765 44555566777777777777765 3333221   113444444444442 1221112233


Q ss_pred             CCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCc
Q 001547          734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH  795 (1056)
Q Consensus       734 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  795 (1056)
                      +.|+.|++.+|.++...-..+.+..+|+.|+|++|++.......+.++..|+.|+||+|+++
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~  420 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT  420 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence            45555666666665555455555555666666666555333334455555555555555555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=3.9e-32  Score=290.14  Aligned_cols=391  Identities=27%  Similarity=0.375  Sum_probs=264.7

Q ss_pred             eeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEc
Q 001547          444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV  523 (1056)
Q Consensus       444 L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  523 (1056)
                      .+..++++|......+|.....+++++.|.+.+.++. .+|.. ++.+.+|++|.+++|++... ...++.++.|+.+++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV   85 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence            5666777777777889999999999999998887654 67887 46888999999998887642 345667788888888


Q ss_pred             cCCcCCC-CCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcC
Q 001547          524 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL  602 (1056)
Q Consensus       524 ~~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  602 (1056)
                      ..|++.. -||.++|. +..|..|||++|+++ ..|..+...+++-+|+|++|+|. .||..++.+++.|-+|+|++|++
T Consensus        86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL  162 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL  162 (1255)
T ss_pred             hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence            8888753 37888887 788888888888887 67777888888888888888887 88888877777777788887777


Q ss_pred             CccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCC-CCCCccccCCCCCcEEEcCCCcccCCCccc
Q 001547          603 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE  681 (1056)
Q Consensus       603 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~  681 (1056)
                      . .+|+.+..+..|++|++++|.+...--..+..+++|++|++++.+-+ ..+|.++..+.+|..++++.|.+. ..|+.
T Consensus       163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence            6 45555666666666666666654322223334445555555544322 234444444444444444444443 34444


Q ss_pred             ccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCC
Q 001547          682 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS  761 (1056)
Q Consensus       682 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~  761 (1056)
                      +.+                                                +.+|+.|+|++|+|+ .+.-..+...+|+
T Consensus       241 ly~------------------------------------------------l~~LrrLNLS~N~it-eL~~~~~~W~~lE  271 (1255)
T KOG0444|consen  241 LYK------------------------------------------------LRNLRRLNLSGNKIT-ELNMTEGEWENLE  271 (1255)
T ss_pred             Hhh------------------------------------------------hhhhheeccCcCcee-eeeccHHHHhhhh
Confidence            444                                                444445555555444 2233344445566


Q ss_pred             EEEcCCCcccccCChhccCCCCCCEEEccCCcCcc-cCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhhe
Q 001547          762 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE  840 (1056)
Q Consensus       762 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  840 (1056)
                      +|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|+.++.+.                                  
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~----------------------------------  316 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI----------------------------------  316 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh----------------------------------
Confidence            6666666666 566666666666666666666542 2455555433                                  


Q ss_pred             eeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547          841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  920 (1056)
Q Consensus       841 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  920 (1056)
                                         .|+++..++|++. .+|+.+..+..|+.|.|++|++. .+|+.+.-++-|+.|||..|.--
T Consensus       317 -------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  317 -------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             -------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence                               5777777788877 88999999999999999999988 78999999999999999999755


Q ss_pred             ccCCccccC-CCCCCeEEcccC-----cccccCC
Q 001547          921 GKIPRQLVD-LNTLAIFIVAYN-----NLSGKIP  948 (1056)
Q Consensus       921 ~~ip~~l~~-l~~L~~l~ls~N-----~l~g~ip  948 (1056)
                       ..|+.-.+ -++|+.-|+.+-     ++.|..|
T Consensus       376 -VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~p  408 (1255)
T KOG0444|consen  376 -VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMP  408 (1255)
T ss_pred             -cCCCCcchhhhcceeeecceehhhHHhhccCCc
Confidence             34433333 256666665542     4566555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=1.2e-31  Score=286.38  Aligned_cols=362  Identities=25%  Similarity=0.373  Sum_probs=193.3

Q ss_pred             CCCccEEEccCCcCC-CCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCC
Q 001547          515 HKRLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  593 (1056)
Q Consensus       515 ~~~L~~L~l~~n~l~-~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  593 (1056)
                      ++-.+-+|+++|.++ +.+|.++-. +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LR   81 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLR   81 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhH
Confidence            344566677777766 345555554 666666666666655 56666666666666666666665 333333 2456666


Q ss_pred             EEEccCCcCCc-cccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCC
Q 001547          594 FLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN  672 (1056)
Q Consensus       594 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  672 (1056)
                      .+.+..|++.. -+|..+..+..|..||+++|++. ..|..+....++-.|+|++|+|..+.-..+.+++.|-.|+|++|
T Consensus        82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            66666665532 34555556666666666666665 45556666666666666666665332234445666666666666


Q ss_pred             cccCCCcccccCCCCCcEEEcccCcCcccC-CCCCCCCcccEEEcCCcccc-cccCcccccCCCCccEEEccCccCCccc
Q 001547          673 HLEGPIPVEFCRLDSLQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLSYNYLNGSI  750 (1056)
Q Consensus       673 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~  750 (1056)
                      .+. .+|..+..+..|++|+|++|++.-.- -..-...+|+.|.+++.+-+ ..+|. ++..+.+|..+|++.|.+. ..
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~v  237 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IV  237 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cc
Confidence            664 34445556666666666666543110 00111234444444443221 22343 4445555555555555554 44


Q ss_pred             chhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCC
Q 001547          751 PDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP  830 (1056)
Q Consensus       751 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1056)
                      |+.+..+++|+.|+|++|+++ .+........+|+.|++|.|+++ ..|+++..++                        
T Consensus       238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------------------------  291 (1255)
T KOG0444|consen  238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------------------------  291 (1255)
T ss_pred             hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------------------------
Confidence            555555555555555555554 23333333445555555555554 2333333322                        


Q ss_pred             CCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccC-CCchhccCCCcCCEEeCCCccCcccccccccCCCCC
Q 001547          831 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI  909 (1056)
Q Consensus       831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  909 (1056)
                                                   .|+.|.+.+|+++- -||..+|.+.+|+++..++|.+. ..|+.+..+..|
T Consensus       292 -----------------------------kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL  341 (1255)
T KOG0444|consen  292 -----------------------------KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL  341 (1255)
T ss_pred             -----------------------------HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence                                         44555555555442 24555555555555555555555 555555555555


Q ss_pred             CEEEccCccCcccCCccccCCCCCCeEEcccC
Q 001547          910 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  941 (1056)
Q Consensus       910 ~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N  941 (1056)
                      +.|.|++|++. .+|+++.-++.|..||+..|
T Consensus       342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             HHhccccccee-echhhhhhcCCcceeeccCC
Confidence            55555555555 45555555555555555555

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-31  Score=300.42  Aligned_cols=285  Identities=25%  Similarity=0.326  Sum_probs=174.7

Q ss_pred             ccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEec
Q 001547          344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA  423 (1056)
Q Consensus       344 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l  423 (1056)
                      ++.+++..|.+.+.++..+..++.  .|||++|.+.    ...+..+++|+.+....|.+... .    -..++|+.|+.
T Consensus       158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l-~----~~g~~l~~L~a  226 (1081)
T KOG0618|consen  158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSEL-E----ISGPSLTALYA  226 (1081)
T ss_pred             chhhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceE-E----ecCcchheeee
Confidence            677777777777777777766666  6888888775    24567778888888888776511 1    12355666666


Q ss_pred             cCccccccccccCCCCCccceeEEEccCCCCCCCCcCcccccCCcccEEEcCCCCCcCcCchHHhhcCCCCcEEecCCCc
Q 001547          424 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS  503 (1056)
Q Consensus       424 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~  503 (1056)
                      +.|.++....                             ...-.+++++++++++++ .+|.|+ ..+.+|+        
T Consensus       227 ~~n~l~~~~~-----------------------------~p~p~nl~~~dis~n~l~-~lp~wi-~~~~nle--------  267 (1081)
T KOG0618|consen  227 DHNPLTTLDV-----------------------------HPVPLNLQYLDISHNNLS-NLPEWI-GACANLE--------  267 (1081)
T ss_pred             ccCcceeecc-----------------------------ccccccceeeecchhhhh-cchHHH-Hhcccce--------
Confidence            6665541110                             001125566666666655 355553 3455444        


Q ss_pred             CcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccch
Q 001547          504 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD  583 (1056)
Q Consensus       504 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~  583 (1056)
                                      .++..+|.++ .+|..++. ..+|+.|.+.+|.+. .+|....+++.|++|+|..|++. .+|+
T Consensus       268 ----------------~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~  327 (1081)
T KOG0618|consen  268 ----------------ALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPD  327 (1081)
T ss_pred             ----------------EecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccch
Confidence                            4455555554 56666655 566777777777666 45556666777777777777775 6666


Q ss_pred             HHhhcCCC-CCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCC
Q 001547          584 HLAMCCVN-LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK  662 (1056)
Q Consensus       584 ~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~  662 (1056)
                      .++..... |..|+.+.|.+.......=..++.|+.|.+.+|.++...-+.+.+..+|+.|+|++|++.......+.++.
T Consensus       328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle  407 (1081)
T KOG0618|consen  328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLE  407 (1081)
T ss_pred             HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchH
Confidence            55543333 55666666665533322223455677777777777666555666667777777777777633334556667


Q ss_pred             CCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCc
Q 001547          663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS  699 (1056)
Q Consensus       663 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  699 (1056)
                      .|+.|++++|+++ .+|..+.++..|++|...+|++.
T Consensus       408 ~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~  443 (1081)
T KOG0618|consen  408 ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL  443 (1081)
T ss_pred             HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence            7777777777766 45666667777777776666665

>PLN03210 Resistant to P

Probab=99.90  E-value=2.7e-22  Score=255.80  Aligned_cols=340  Identities=22%  Similarity=0.258  Sum_probs=213.0

Q ss_pred             CCCCCCCccEEEccCCc------CCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchH
Q 001547          511 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH  584 (1056)
Q Consensus       511 ~~~~~~~L~~L~l~~n~------l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~  584 (1056)
                      .|..+++|+.|.+..+.      +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            35567777777775543      222355554443345777777777665 556555 4567777777777776 55555


Q ss_pred             HhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCC
Q 001547          585 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL  664 (1056)
Q Consensus       585 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L  664 (1056)
                      + ..+++|+.|+++++...+.+| .+..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            4 356777777777665444454 35667777777777776666677777777777777777765555666554 66777


Q ss_pred             cEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccc---c---ccCcccccCCCCccE
Q 001547          665 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT  738 (1056)
Q Consensus       665 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~  738 (1056)
                      +.|++++|...+.+|..   .++|+.|++++|.+. .+|......+|+.|.+.++...   +   .++...+..+++|+.
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~  782 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR  782 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence            77777777655455532   356677777777764 4555555566666666553211   0   011112223456777


Q ss_pred             EEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCC
Q 001547          739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD  818 (1056)
Q Consensus       739 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~  818 (1056)
                      |++++|...+.+|.+++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..                 
T Consensus       783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------------  844 (1153)
T PLN03210        783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------------  844 (1153)
T ss_pred             eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence            7777776666677777777777777777765444566554 5677777777766543333221                 


Q ss_pred             CCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccc
Q 001547          819 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT  898 (1056)
Q Consensus       819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  898 (1056)
                                                             .++++.|+|++|.++ .+|..+..+++|+.|+|++|+--..
T Consensus       845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence                                                   125677777777777 5677777777777777777433335


Q ss_pred             ccccccCCCCCCEEEccCcc
Q 001547          899 IPLTFSNLRHIESLDLSYNK  918 (1056)
Q Consensus       899 ~p~~~~~l~~L~~LdLs~N~  918 (1056)
                      +|..+..+++|+.+++++|.
T Consensus       885 l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cCcccccccCCCeeecCCCc
Confidence            66677777777777777774

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=2.5e-22  Score=256.09  Aligned_cols=340  Identities=21%  Similarity=0.258  Sum_probs=239.8

Q ss_pred             ChhhhhcCCCCcEEEccCCc------ccccCCccccCCC-CCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCcc
Q 001547          533 PVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH  605 (1056)
Q Consensus       533 p~~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~  605 (1056)
                      ....+..+++|+.|.+..+.      +...+|..|..++ +|+.|.+.++.+. .+|..+  ...+|+.|++++|.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            34445557888888886553      2234566666654 5888888888876 777765  4678888888888876 4


Q ss_pred             ccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCC
Q 001547          606 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL  685 (1056)
Q Consensus       606 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l  685 (1056)
                      ++..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            566677788888888887765556664 7778888888888877666788888888888888888876555666655 67


Q ss_pred             CCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCC-------cccchhhhccC
Q 001547          686 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN-------GSIPDWIDGLS  758 (1056)
Q Consensus       686 ~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~  758 (1056)
                      ++|+.|++++|...+.+|..  ..+|+.|++++|.+. .+|. .+ .+++|+.|++.++...       ...|..+...+
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~  778 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP  778 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhccc
Confidence            88888888888766666643  357788888888764 4554 22 5677777777764321       11222233456


Q ss_pred             CCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001547          759 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI  838 (1056)
Q Consensus       759 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  838 (1056)
                      +|+.|++++|...+.+|..++++++|+.|++++|+..+.+|... +                                  
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~----------------------------------  823 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N----------------------------------  823 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence            78888888887777788888888888888888876555555432 1                                  


Q ss_pred             heeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCcc
Q 001547          839 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK  918 (1056)
Q Consensus       839 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  918 (1056)
                                         +++|+.|++++|.....+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++|+
T Consensus       824 -------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        824 -------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN  880 (1153)
T ss_pred             -------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence                               236788888887665556553   356788888888887 677788888888888888843


Q ss_pred             CcccCCccccCCCCCCeEEcccC
Q 001547          919 LSGKIPRQLVDLNTLAIFIVAYN  941 (1056)
Q Consensus       919 l~~~ip~~l~~l~~L~~l~ls~N  941 (1056)
                      --..+|..+..++.|+.+++++|
T Consensus       881 ~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        881 NLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CcCccCcccccccCCCeeecCCC
Confidence            33357777778888888888877

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-25  Score=227.87  Aligned_cols=420  Identities=21%  Similarity=0.196  Sum_probs=274.6

Q ss_pred             CCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccC-ccCCC
Q 001547          501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTG  579 (1056)
Q Consensus       501 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~  579 (1056)
                      +|...|....|-.-.+....++|..|+|+ .||...|+.+++|+.|||++|.|+.+-|++|.++++|..|-+.+ |+|+ 
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            34445555555556678889999999998 89999998899999999999999999999999999988877766 8898 


Q ss_pred             ccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCcccc
Q 001547          580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG  659 (1056)
Q Consensus       580 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~  659 (1056)
                      .+|...|.++..|+.|.+.-|++.....+.|..++++..|.+.+|.+..+-...+..+.+++.+++..|.+-     ..+
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i-----cdC  204 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI-----CDC  204 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc-----ccc
Confidence            899999999999999999999999888889999999999999999988554458888889999998888753     123


Q ss_pred             CCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCC--cccEEEcCCcccccccCcccccCCCCcc
Q 001547          660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLV  737 (1056)
Q Consensus       660 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~  737 (1056)
                      +++.+.....       ..|..++.........+.++++...-+..+...  ++..-..+.+...+..|...|..+++|+
T Consensus       205 nL~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~  277 (498)
T KOG4237|consen  205 NLPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLR  277 (498)
T ss_pred             ccchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccce
Confidence            3333332211       122233334444444444444443333333222  2222222334444566766788899999


Q ss_pred             EEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCC
Q 001547          738 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSP  817 (1056)
Q Consensus       738 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~  817 (1056)
                      .|+|++|+++++-+.||.++..++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|.....+...+..+++
T Consensus       278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            99999999998888999999999999999999887667788889999999999999998888888877655444443332


Q ss_pred             CCCCc------cccccCC----C----CCchhhhhheeee---ecccccccc---ccc---hhcccc-CeEEcCCCcccC
Q 001547          818 DKPFK------TSFSISG----P----QGSVEKKILEIFE---FTTKNIAYA---YQG---RVLSLL-AGLDLSCNKLVG  873 (1056)
Q Consensus       818 ~~~~~------~~~~~~~----~----~~~~~~~~~~~~~---~~~~~~~~~---~~~---~~l~~L-~~L~Ls~N~l~~  873 (1056)
                      ..--+      .+.....    .    ++.+.....+.+.   +...+-+..   ...   ...+-+ ++..-|+..+. 
T Consensus       358 ~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-  436 (498)
T KOG4237|consen  358 FNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-  436 (498)
T ss_pred             ccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-
Confidence            21111      1110000    0    1111000000010   000000000   000   000001 11222232222 


Q ss_pred             CCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccC
Q 001547          874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN  941 (1056)
Q Consensus       874 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N  941 (1056)
                      .+|..+.  ....+|++.+|.++ .+|..  .+.+| .+|+|+|+++..--..|.+++.|.+|-+|||
T Consensus       437 ~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  437 LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            3333322  13456788888888 66665  55677 7888888888666677888888888888876

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2.9e-25  Score=226.92  Aligned_cols=403  Identities=23%  Similarity=0.240  Sum_probs=269.3

Q ss_pred             cCchHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccC-CcccccCCcc
Q 001547          482 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM-NALDGSIPSS  560 (1056)
Q Consensus       482 ~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~~~~p~~  560 (1056)
                      ++|..+   -+.-.+++|..|.|+...+..|..+++|++|||++|.|+ .|....|.+++++..|-+.+ |+|+......
T Consensus        60 eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   60 EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            566542   245678999999999999999999999999999999998 77777777899988887776 9999887889


Q ss_pred             ccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceeccccccc------------c
Q 001547          561 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV------------G  628 (1056)
Q Consensus       561 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~------------~  628 (1056)
                      |+++.+|+.|.+.-|++. .++...+..+++|..|.+.+|.+..+-...|..+..++.+.+..|.+.            .
T Consensus       136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a  214 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA  214 (498)
T ss_pred             hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHh
Confidence            999999999999999998 888888899999999999999998666668999999999999998843            2


Q ss_pred             cCCccccCCCCCcEEECCCCcCCCCCCcccc-CCCCCcEEEcCCCcccCCCc-ccccCCCCCcEEEcccCcCcccCCCCC
Q 001547          629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISGSLPSCF  706 (1056)
Q Consensus       629 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~~  706 (1056)
                      ..|..++...-..-..+.+.++...-+..+. .+..+..-..+.+...+.-| ..|..+++|+.|++++|++++.-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            2333344433333344444444433222221 11222211222333333333 468899999999999999997777666


Q ss_pred             CC-CcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccC-----Chhcc-
Q 001547          707 YP-LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-----PIQLC-  779 (1056)
Q Consensus       707 ~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~-  779 (1056)
                      .. ..+++|+|..|++. .+..+.|.++..|++|+|.+|+|+...|.+|..+.+|.+|++-.|.+.-.-     -+|+. 
T Consensus       295 e~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~  373 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRK  373 (498)
T ss_pred             cchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhh
Confidence            43 46777777777764 344446777777777777777777667777777777777777666654110     01110 


Q ss_pred             ----------CCCCCCEEEccCCcCccc---CCccccccccccccCCCCCCCCCCccccccCCCCCchhhhh-heeeeec
Q 001547          780 ----------RLNQLQLLDLSDNNLHGL---IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI-LEIFEFT  845 (1056)
Q Consensus       780 ----------~l~~L~~L~Ls~N~l~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  845 (1056)
                                .-..++.+++++..+...   .|+..+-            ...+.+          ...-.. ...+.++
T Consensus       374 ~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~------------~~s~~c----------P~~c~c~~tVvRcS  431 (498)
T KOG4237|consen  374 KSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC------------LTSSPC----------PPPCTCLDTVVRCS  431 (498)
T ss_pred             CCCCCCCCCCCCchhccccchhccccccccCCccccCC------------CCCCCC----------CCCcchhhhhHhhc
Confidence                      011233333333322211   0000000            000000          000001 1122223


Q ss_pred             cccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCc
Q 001547          846 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN  917 (1056)
Q Consensus       846 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N  917 (1056)
                      .+.....+ ..+....+++++.+|.++ .+|.+  .+.+| .+|+|+|+++..-...|.++++|.+|-||+|
T Consensus       432 nk~lk~lp-~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  432 NKLLKLLP-RGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccchhhcC-CCCCchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            33333222 234456789999999999 77877  67788 8999999999888889999999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.1e-20  Score=221.92  Aligned_cols=264  Identities=27%  Similarity=0.351  Sum_probs=129.9

Q ss_pred             CCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccceec
Q 001547          542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL  621 (1056)
Q Consensus       542 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  621 (1056)
                      .-..|+++.+.++ .+|..+.  ++|+.|++++|+++ .+|..    .++|++|++++|+++. +|..   .++|+.|++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceeec
Confidence            3556777777776 4555554  35677777777766 45532    3556666666665553 2221   234455555


Q ss_pred             ccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccCcCccc
Q 001547          622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS  701 (1056)
Q Consensus       622 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  701 (1056)
                      ++|.+. .+|..   .++|+.|++++|+++ .+|.                           ..++|+.|++++|++++ 
T Consensus       270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~~-  316 (788)
T PRK15387        270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLAS-  316 (788)
T ss_pred             cCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCcccc-
Confidence            555444 22221   123444444444443 2222                           12344555555554442 


Q ss_pred             CCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCC
Q 001547          702 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL  781 (1056)
Q Consensus       702 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  781 (1056)
                      +|.  .+.+|+.|++++|.+. .+|.  +  ..+|+.|++++|++++ +|..   .++|+.|++++|++++ +|..   .
T Consensus       317 Lp~--lp~~L~~L~Ls~N~L~-~LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        317 LPA--LPSELCKLWAYNNQLT-SLPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             CCC--CcccccccccccCccc-cccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence            221  1122333334444332 1222  0  1356666666666653 3322   2345556666666652 4432   2


Q ss_pred             CCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhcccc
Q 001547          782 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL  861 (1056)
Q Consensus       782 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  861 (1056)
                      .+|+.|++++|++++ +|..                                                        .+.|
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l--------------------------------------------------------~s~L  404 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL--------------------------------------------------------PSEL  404 (788)
T ss_pred             cccceEEecCCcccC-CCCc--------------------------------------------------------ccCC
Confidence            345666666666553 2211                                                        0135


Q ss_pred             CeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccc
Q 001547          862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL  927 (1056)
Q Consensus       862 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l  927 (1056)
                      +.|++++|++++ +|...   .+|+.|++++|+|+ .+|..+.++++|+.|||++|+|+|.+|..+
T Consensus       405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            556666666653 44322   24555666666665 456666666666666666666666655554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.4e-20  Score=217.01  Aligned_cols=268  Identities=26%  Similarity=0.331  Sum_probs=201.5

Q ss_pred             CCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEE
Q 001547          516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL  595 (1056)
Q Consensus       516 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L  595 (1056)
                      ..-..|+++.+.++ .+|..+.   ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..    .++|+.|
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----cccccee
Confidence            34568999999998 7898764   589999999999994 564   3578999999999999 77753    4789999


Q ss_pred             EccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCccc
Q 001547          596 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  675 (1056)
Q Consensus       596 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  675 (1056)
                      ++++|.++. +|..   .++|+.|++++|+++ .+|..   .++|+.|++++|++++ +|..   ..+|+.|++++|.++
T Consensus       268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT  335 (788)
T ss_pred             eccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence            999999874 4432   357889999999998 45643   4689999999999985 4542   245778888888887


Q ss_pred             CCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhh
Q 001547          676 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID  755 (1056)
Q Consensus       676 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~  755 (1056)
                      + +|..   ..+|+.|++++|++++ +|.                        .   .++|+.|++++|.+++ +|..  
T Consensus       336 ~-LP~l---p~~Lq~LdLS~N~Ls~-LP~------------------------l---p~~L~~L~Ls~N~L~~-LP~l--  380 (788)
T PRK15387        336 S-LPTL---PSGLQELSVSDNQLAS-LPT------------------------L---PSELYKLWAYNNRLTS-LPAL--  380 (788)
T ss_pred             c-cccc---ccccceEecCCCccCC-CCC------------------------C---Ccccceehhhcccccc-Cccc--
Confidence            4 4431   2467888888887763 232                        1   1356667777777763 4542  


Q ss_pred             ccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchh
Q 001547          756 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE  835 (1056)
Q Consensus       756 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  835 (1056)
                       .++|+.|++++|++++ +|..   .++|+.|++++|++++ +|...                                 
T Consensus       381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---------------------------------  421 (788)
T PRK15387        381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---------------------------------  421 (788)
T ss_pred             -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---------------------------------
Confidence             2467888888888874 5543   3578899999998875 44321                                 


Q ss_pred             hhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCC
Q 001547          836 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL  906 (1056)
Q Consensus       836 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  906 (1056)
                                             ..|+.|++++|+++ .+|..++++++|+.|+|++|.|++..|..+..+
T Consensus       422 -----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        422 -----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             -----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence                                   14677999999998 789999999999999999999999988877443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=1.8e-18  Score=205.29  Aligned_cols=119  Identities=25%  Similarity=0.361  Sum_probs=64.0

Q ss_pred             CCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCcccccee
Q 001547          541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL  620 (1056)
Q Consensus       541 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  620 (1056)
                      .+...|+++++.++ .+|..+.  +.|+.|++++|+++ .+|..++   .+|+.|++++|.++. +|..+.  ++|+.|+
T Consensus       178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence            34667777777777 3555442  46777778777777 6666553   467777777776663 333322  2455555


Q ss_pred             cccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCccc
Q 001547          621 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE  675 (1056)
Q Consensus       621 l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  675 (1056)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            5555554 3343332  24555555555444 2333222  23444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.1e-18  Score=204.79  Aligned_cols=159  Identities=24%  Similarity=0.353  Sum_probs=86.1

Q ss_pred             ccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEc
Q 001547          518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL  597 (1056)
Q Consensus       518 L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L  597 (1056)
                      ...|+++++.++ .+|..+   .+.++.|++++|.++ .+|..+.  ++|++|++++|+++ .+|..+.   .+|+.|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence            344555555555 445433   235566666666655 3343332  35666666666665 5555432   35666666


Q ss_pred             cCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCC
Q 001547          598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP  677 (1056)
Q Consensus       598 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  677 (1056)
                      ++|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. 
T Consensus       249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-  318 (754)
T PRK15370        249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-  318 (754)
T ss_pred             cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence            666665 3344332  35666666666666 3455443  467777777777763 444332  356666666666653 


Q ss_pred             CcccccCCCCCcEEEcccCcCc
Q 001547          678 IPVEFCRLDSLQILDISDNNIS  699 (1056)
Q Consensus       678 ~p~~~~~l~~L~~L~Ls~n~l~  699 (1056)
                      +|..+  .++|+.|++++|.++
T Consensus       319 LP~~l--~~sL~~L~Ls~N~Lt  338 (754)
T PRK15370        319 LPETL--PPGLKTLEAGENALT  338 (754)
T ss_pred             CCccc--cccceeccccCCccc
Confidence            33322  245566666666554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=1.3e-18  Score=193.66  Aligned_cols=58  Identities=26%  Similarity=0.205  Sum_probs=28.4

Q ss_pred             EEEccCccCCCccchHHhhcCCCCCEEEccCCcCCcc----ccccccCCccccceecccccc
Q 001547          569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH----IFSRIFSLRNLRWLLLEGNHF  626 (1056)
Q Consensus       569 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~  626 (1056)
                      .|+|..+.+++.--...+..+.+|++++++++.++..    ++..+...+.+++++++++.+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            3566666665333333334455666666666665432    222333334444444444433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=2.3e-18  Score=191.53  Aligned_cols=58  Identities=24%  Similarity=0.230  Sum_probs=36.2

Q ss_pred             EEEccCCccc-ccCCccccCCCCCCEEEccCccCCCc----cchHHhhcCCCCCEEEccCCcCC
Q 001547          545 YFNISMNALD-GSIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK  603 (1056)
Q Consensus       545 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~----i~~~~~~~l~~L~~L~L~~n~l~  603 (1056)
                      .|+|..+.++ +..+..+..+..|++++++++.+++.    ++..+ ...+++++++++++.+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~   64 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETG   64 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccC
Confidence            4566666665 34445556667788888888877532    23222 24566888888877665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-17  Score=150.62  Aligned_cols=144  Identities=31%  Similarity=0.521  Sum_probs=90.0

Q ss_pred             cccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCccc-CCcccccccc
Q 001547          729 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTL  807 (1056)
Q Consensus       729 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~  807 (1056)
                      .++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|||++|++... .|..|..   
T Consensus        51 nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~---  125 (264)
T KOG0617|consen   51 NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY---  125 (264)
T ss_pred             cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhH---
Confidence            4666677777777777776 56666777777777777777766 6677777777777777777766532 2333322   


Q ss_pred             ccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCE
Q 001547          808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT  887 (1056)
Q Consensus       808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  887 (1056)
                                                                        ++.|+.|+|+.|.+. .+|..++++++|+.
T Consensus       126 --------------------------------------------------m~tlralyl~dndfe-~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen  126 --------------------------------------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQI  154 (264)
T ss_pred             --------------------------------------------------HHHHHHHHhcCCCcc-cCChhhhhhcceeE
Confidence                                                              224566666666665 55666666666666


Q ss_pred             EeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCC
Q 001547          888 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL  930 (1056)
Q Consensus       888 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l  930 (1056)
                      |.+..|.+- ..|..++.++.|++|.+.+|+++ .+|.+++.+
T Consensus       155 l~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  155 LSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL  195 (264)
T ss_pred             EeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence            666666665 55666666666666666666665 455554443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.60  E-value=2.1e-17  Score=149.89  Aligned_cols=166  Identities=31%  Similarity=0.497  Sum_probs=149.2

Q ss_pred             ccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCcccccccccc
Q 001547          730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE  809 (1056)
Q Consensus       730 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  809 (1056)
                      +.++.+.+.|.+++|+++ ..|..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|++. ..|..|+.+.   
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p---  102 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP---  102 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence            556678889999999999 66778999999999999999998 88999999999999999999987 6788888754   


Q ss_pred             ccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccC-CCchhccCCCcCCEE
Q 001547          810 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTL  888 (1056)
Q Consensus       810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L  888 (1056)
                                                                        .|+.|||++|++.. ..|..|-.++.|+.|
T Consensus       103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen  103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence                                                              78999999999975 578889999999999


Q ss_pred             eCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCCccccc
Q 001547          889 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF  954 (1056)
Q Consensus       889 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~  954 (1056)
                      +|++|.+. .+|..++++++|+.|.+..|.+- ..|.+++.++.|+.|.+.+|+++-..|+ .+++
T Consensus       133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l  195 (264)
T KOG0617|consen  133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANL  195 (264)
T ss_pred             HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhh
Confidence            99999999 88999999999999999999998 8999999999999999999999977776 5444

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=172.75  Aligned_cols=118  Identities=36%  Similarity=0.632  Sum_probs=106.3

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  939 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  939 (1056)
                      .++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCcccc-cCCCCccccCCCCCCCCCCC-CCCC
Q 001547          940 YNNLSGKIPEWTAQ-FATFNKSSYDGNPFLCGLPL-PICR  977 (1056)
Q Consensus       940 ~N~l~g~ip~~~~~-~~~~~~~~~~gN~~lc~~~l-~~c~  977 (1056)
                      +|+++|.+|..... ........+.+|+++|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999975433 23445677899999999764 3663

>PLN03150 hypothetical protein; Provisional

Probab=99.38  E-value=2.4e-12  Score=153.35  Aligned_cols=150  Identities=30%  Similarity=0.409  Sum_probs=92.2

Q ss_pred             cCcCCHHHHHHHHhhhhcCCCCC--CCCCCCcc----cccceeeCC--CCC--ceEEEeccccccCCccccccccCcCCC
Q 001547           14 SEGCLDHERFALLRLKHFFTDPY--DKGATDCC----QWEGVECSN--TTG--RVIGLYLSETYSGEYWYLNASLFTPFQ   83 (1056)
Q Consensus        14 ~~~c~~~~~~all~~k~~~~~~~--~~~~~~~c----~w~gv~C~~--~~~--~v~~l~l~~~~~~~~~~~~~~~f~~l~   83 (1056)
                      ...+.++|.+||++||+++.+|.  +..+..||    .|.||.|+.  .++  +|+.|+|+++.+.+..   +..|..++
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i---p~~i~~L~  442 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI---PNDISKLR  442 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC---CHHHhCCC
Confidence            34567789999999999987764  22444443    799999953  222  4778888777554331   23455566


Q ss_pred             CCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcC-CCCC
Q 001547           84 QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS-LSNL  162 (1056)
Q Consensus        84 ~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~-L~~L  162 (1056)
                      +|++|+|++|.+.+..+    +.++.+++|++|||++|.+++.+|..++++++|++|+|++|.+.|.+|. .++. ..++
T Consensus       443 ~L~~L~Ls~N~l~g~iP----~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~~~~~~  517 (623)
T PLN03150        443 HLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA-ALGGRLLHR  517 (623)
T ss_pred             CCCEEECCCCcccCcCC----hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh-HHhhccccC
Confidence            66666666666655444    3455666666666666666666666666666666666666666666654 3433 2344


Q ss_pred             ceEeCCCCC
Q 001547          163 EELDINDNE  171 (1056)
Q Consensus       163 ~~L~Ls~n~  171 (1056)
                      ..+++.+|.
T Consensus       518 ~~l~~~~N~  526 (623)
T PLN03150        518 ASFNFTDNA  526 (623)
T ss_pred             ceEEecCCc
Confidence            555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=4.3e-13  Score=144.75  Aligned_cols=171  Identities=33%  Similarity=0.497  Sum_probs=127.1

Q ss_pred             cEEEcCCcccccccCcccccCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccC
Q 001547          712 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD  791 (1056)
Q Consensus       712 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  791 (1056)
                      ...+++.|++. ++|. .+..+..|+.+.+..|.+. .+|..+.++..|..|+|+.|+++ ..|..++.|+ |+.|-+++
T Consensus        78 ~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence            45566666664 4555 5556666666777777666 56666777777777777777776 5666666653 66777777


Q ss_pred             CcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcc
Q 001547          792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL  871 (1056)
Q Consensus       792 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  871 (1056)
                      |+++ .+|..++.                                                     ...|..||.|.|.+
T Consensus       153 Nkl~-~lp~~ig~-----------------------------------------------------~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  153 NKLT-SLPEEIGL-----------------------------------------------------LPTLAHLDVSKNEI  178 (722)
T ss_pred             Cccc-cCCccccc-----------------------------------------------------chhHHHhhhhhhhh
Confidence            7665 33433332                                                     23688899999999


Q ss_pred             cCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccc
Q 001547          872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG  945 (1056)
Q Consensus       872 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g  945 (1056)
                      . .+|..++++.+|+.|++..|++. ..|..+..| .|..||+|.|+++ .||..|..|..|+++-|.+|+|.-
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            8 78888999999999999999998 566677755 4889999999998 899999999999999999999984

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=4.5e-12  Score=129.60  Aligned_cols=93  Identities=25%  Similarity=0.290  Sum_probs=56.8

Q ss_pred             cCCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCc----cchh-------hcCCCCCcEEecCCCccc
Q 001547           80 TPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS----ILSS-------VARLSSLTSLHLSHNILQ  148 (1056)
Q Consensus        80 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~----~~~~-------l~~l~~L~~L~Ls~n~l~  148 (1056)
                      .....+++++||+|.|..-....+...+.+.+.|+..++|+-. +|.    +|+.       +-.+++|++||||+|.+.
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4456667777777776654444444566777788888877652 322    3433       344567888888887765


Q ss_pred             CccCh---hhhcCCCCCceEeCCCCCCC
Q 001547          149 GSIDA---KEFDSLSNLEELDINDNEID  173 (1056)
Q Consensus       149 ~~i~~---~~l~~L~~L~~L~Ls~n~l~  173 (1056)
                      ..-+.   ..+..+..|++|.|.+|.+.
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            32221   23456777777777777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.11  E-value=1.1e-10  Score=133.49  Aligned_cols=198  Identities=35%  Similarity=0.509  Sum_probs=110.3

Q ss_pred             EEEcCCCcccCCCcccccCCCCCcEEEcccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCC-CCccEEEccCc
Q 001547          666 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN  744 (1056)
Q Consensus       666 ~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n  744 (1056)
                      .+.+..|.+... +..+..++.++.|++.+|.++...+                         ..... .+|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~-------------------------~~~~~~~nL~~L~l~~N  150 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPP-------------------------LIGLLKSNLKELDLSDN  150 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccccCcc-------------------------ccccchhhccccccccc
Confidence            456666655322 2233444566666666666663322                         22223 25666666666


Q ss_pred             cCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccc
Q 001547          745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS  824 (1056)
Q Consensus       745 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  824 (1056)
                      ++. .+|..+..+++|+.|++++|++. .+|......+.|+.|++++|+++...+.. .                     
T Consensus       151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~-~---------------------  206 (394)
T COG4886         151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEI-E---------------------  206 (394)
T ss_pred             chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhh-h---------------------
Confidence            665 34445566666666666666665 44544445666666666666665332211 0                     


Q ss_pred             cccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCccccccccc
Q 001547          825 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS  904 (1056)
Q Consensus       825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  904 (1056)
                                                      ....|+++++++|++. .++..+..+..+..|.+++|++. .+|..++
T Consensus       207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~  252 (394)
T COG4886         207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG  252 (394)
T ss_pred             --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence                                            0113566666666433 35555666666666666666665 3355666


Q ss_pred             CCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcccccCCC
Q 001547          905 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  949 (1056)
Q Consensus       905 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l~g~ip~  949 (1056)
                      .++++++|++++|+++ .++. +..+.+++.+++++|.++...|.
T Consensus       253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence            6666666666666666 3333 56666666666666666655543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.4e-11  Score=125.76  Aligned_cols=163  Identities=24%  Similarity=0.259  Sum_probs=70.3

Q ss_pred             CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCc--cchhhcCCCCCcEEecCCCcccCccChhhhcC
Q 001547           81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS--ILSSVARLSSLTSLHLSHNILQGSIDAKEFDS  158 (1056)
Q Consensus        81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~  158 (1056)
                      ++++||...|.++.....+..   +....|++++.||||+|-+...  +......|++|+.|+|+.|.+.-.+....-..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            345555555555544333321   2234455555555555544432  22233445555555555555542222212234


Q ss_pred             CCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCc
Q 001547          159 LSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTN  238 (1056)
Q Consensus       159 L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~  238 (1056)
                      +++|+.|.++.|.++...........+.++.|.+..+..-.  .......-+..|++|||++|++..... ....+.++.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~  272 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPG  272 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc--eecchhhhhhHHhhccccCCccccccc-ccccccccc
Confidence            45555555555555544444444444444444444443100  001112233444555555554443321 113344444


Q ss_pred             ccEEecCCCCC
Q 001547          239 LEYLTLDDSSL  249 (1056)
Q Consensus       239 L~~L~L~~~~~  249 (1056)
                      |+.|+++.+.+
T Consensus       273 L~~Lnls~tgi  283 (505)
T KOG3207|consen  273 LNQLNLSSTGI  283 (505)
T ss_pred             hhhhhccccCc
Confidence            55555444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.02  E-value=1.9e-11  Score=132.33  Aligned_cols=175  Identities=30%  Similarity=0.448  Sum_probs=151.7

Q ss_pred             CCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCC
Q 001547          514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE  593 (1056)
Q Consensus       514 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~  593 (1056)
                      .+..-...|++.|++. ++|..+.. +..|+.+.+..|.+. .+|..++++..|++++++.|+++ .+|..++  .--|+
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk  146 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK  146 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence            4455667899999998 88988776 788999999999988 78899999999999999999998 8888874  45699


Q ss_pred             EEEccCCcCCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCc
Q 001547          594 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH  673 (1056)
Q Consensus       594 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~  673 (1056)
                      .|-+++|+++ .+|+.++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+. .-.|..||++.|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence            9999999998 67888888899999999999987 67888999999999999999997 6777777 4458899999999


Q ss_pred             ccCCCcccccCCCCCcEEEcccCcCc
Q 001547          674 LEGPIPVEFCRLDSLQILDISDNNIS  699 (1056)
Q Consensus       674 l~~~~p~~~~~l~~L~~L~Ls~n~l~  699 (1056)
                      ++ .+|..|.+|+.|++|-|.+|.+.
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC
Confidence            97 78999999999999999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=3.6e-11  Score=123.08  Aligned_cols=118  Identities=22%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CceEEEeccccccCCc-cccccccCcCCCCCCEeeCCCCCCCCcccccc-------chhccCCCCCcEEeCCCCcCCCcc
Q 001547           56 GRVIGLYLSETYSGEY-WYLNASLFTPFQQLESLDLSWNNIAGCAENEG-------LERLSRLSKLKKLDLRGNLCNNSI  127 (1056)
Q Consensus        56 ~~v~~l~l~~~~~~~~-~~~~~~~f~~l~~L~~L~Ls~~~~~~~~~~~~-------l~~l~~l~~L~~L~Ls~n~~~~~~  127 (1056)
                      ..+++++|+|+.++.. ...-...+.+.+.|+..++|+- ++|.+..+.       .+++...++|++||||+|.+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            4589999999965422 2223455678889999999975 344443322       245668889999999999987665


Q ss_pred             chh----hcCCCCCcEEecCCCcccCccChh-------------hhcCCCCCceEeCCCCCCCcc
Q 001547          128 LSS----VARLSSLTSLHLSHNILQGSIDAK-------------EFDSLSNLEELDINDNEIDNV  175 (1056)
Q Consensus       128 ~~~----l~~l~~L~~L~Ls~n~l~~~i~~~-------------~l~~L~~L~~L~Ls~n~l~~~  175 (1056)
                      ++.    +.+++.|++|.|.+|.+. .....             ..+.-++||++..+.|.+...
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence            554    466899999999999886 22211             234456777777777776544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=3.7e-10  Score=129.21  Aligned_cols=33  Identities=39%  Similarity=0.500  Sum_probs=13.6

Q ss_pred             EEEccCccCCCccchHHhhcCCCCCEEEccCCcCC
Q 001547          569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK  603 (1056)
Q Consensus       569 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~  603 (1056)
                      .+++..|.+...+....  ..+.++.|++.+|.++
T Consensus        97 ~l~~~~~~~~~~~~~~~--~~~~l~~L~l~~n~i~  129 (394)
T COG4886          97 SLDLNLNRLRSNISELL--ELTNLTSLDLDNNNIT  129 (394)
T ss_pred             eeeccccccccCchhhh--cccceeEEecCCcccc
Confidence            45555555432222211  2234444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=2e-10  Score=120.84  Aligned_cols=91  Identities=29%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             CCCCccEEEccCCcccccc-cccccCCCCCcEEECcCCcCcCcCCCcc------cccCCCCcEEEccCCcccccCCcccc
Q 001547          340 PLAHLQELYIDNNDLRGSL-PWCLANTTSLRILDVSFNQLTGSISSSP------LVHLTSIEELRLSNNHFRIPVSLEPL  412 (1056)
Q Consensus       340 ~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~i~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~l  412 (1056)
                      .+..|++|+|++|++.... -...+.++.|+.|+++.+.+. ++....      ....++|++|+++.|++..--....+
T Consensus       244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l  322 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL  322 (505)
T ss_pred             hhhHHhhccccCCcccccccccccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence            3556667777776654322 123556677777777777665 331111      24567777777777777533334455


Q ss_pred             cCCCCccEEeccCcccccc
Q 001547          413 FNHSKLKIFDAKNNEINGE  431 (1056)
Q Consensus       413 ~~l~~L~~L~l~~n~l~~~  431 (1056)
                      ..+++|+.+.+..|.+..+
T Consensus       323 ~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  323 RTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccchhhhhhccccccccc
Confidence            5666777777666666543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.1e-09  Score=106.03  Aligned_cols=130  Identities=30%  Similarity=0.422  Sum_probs=42.8

Q ss_pred             cCCCCCCEeeCCCCCCCCccccccchhcc-CCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhh-c
Q 001547           80 TPFQQLESLDLSWNNIAGCAENEGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEF-D  157 (1056)
Q Consensus        80 ~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~  157 (1056)
                      .+..++++|+|++|.|+.+.      .++ .+.+|++|||++|.+..  .+.+..+++|++|++++|.+. .++. .+ .
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~   85 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRIS-SISE-GLDK   85 (175)
T ss_dssp             --------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHH
T ss_pred             cccccccccccccccccccc------chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCC-cccc-chHH
Confidence            34456777777777776543      244 46777777888777764  235666777778888877776 5543 33 4


Q ss_pred             CCCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCccc-ccccccCC
Q 001547          158 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT-TTQELHNF  236 (1056)
Q Consensus       158 ~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~~~l~~l  236 (1056)
                      .+++|++|++++|++....-                          +..+..+++|++|+|.+|++..... ....+..+
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~--------------------------l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNE--------------------------LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             H-TT--EEE-TTS---SCCC--------------------------CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             hCCcCCEEECcCCcCCChHH--------------------------hHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            57777777777777754431                          2235566677777777776653311 11234556


Q ss_pred             CcccEEecC
Q 001547          237 TNLEYLTLD  245 (1056)
Q Consensus       237 ~~L~~L~L~  245 (1056)
                      ++|+.||-.
T Consensus       140 P~Lk~LD~~  148 (175)
T PF14580_consen  140 PSLKVLDGQ  148 (175)
T ss_dssp             TT-SEETTE
T ss_pred             ChhheeCCE
Confidence            777777643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=3.1e-10  Score=113.11  Aligned_cols=87  Identities=28%  Similarity=0.282  Sum_probs=56.4

Q ss_pred             cccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCC-ccccCCCCCCeEE
Q 001547          859 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP-RQLVDLNTLAIFI  937 (1056)
Q Consensus       859 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~l~  937 (1056)
                      ++|+.||||+|.++ .+-.+-..+-+.++|+|+.|.+...  +.++++-+|..||++.|+|..... ..+++++.|+++.
T Consensus       329 ~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  329 PQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             ccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            35667777777666 3344445566677777777776622  356666777777777777763222 4567777788888


Q ss_pred             cccCcccccCC
Q 001547          938 VAYNNLSGKIP  948 (1056)
Q Consensus       938 ls~N~l~g~ip  948 (1056)
                      +.+|++.+.+.
T Consensus       406 L~~NPl~~~vd  416 (490)
T KOG1259|consen  406 LTGNPLAGSVD  416 (490)
T ss_pred             hcCCCccccch
Confidence            88888776443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=4.7e-10  Score=111.81  Aligned_cols=133  Identities=31%  Similarity=0.335  Sum_probs=106.3

Q ss_pred             cCCCCccEEEccCccCCcccchhhhccCCCCEEEcCCCcccccCChhccCCCCCCEEEccCCcCcccCCccccccccccc
Q 001547          731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES  810 (1056)
Q Consensus       731 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~  810 (1056)
                      ...+.|+.+||++|.|+ .+.+.+.-.|.++.|++++|.+...  ..+..+++|+.||||+|.++.... +-        
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~G-wh--------  348 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVG-WH--------  348 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhh-hH--------
Confidence            34567999999999998 6677888899999999999999732  348889999999999998764311 00        


Q ss_pred             cCCCCCCCCCCccccccCCCCCchhhhhheeeeeccccccccccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeC
Q 001547          811 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL  890 (1056)
Q Consensus       811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  890 (1056)
                                                                   ..+.+.+.|.|++|.+..  -..++.+-+|..||+
T Consensus       349 ---------------------------------------------~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  349 ---------------------------------------------LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDL  381 (490)
T ss_pred             ---------------------------------------------hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccc
Confidence                                                         114478899999999863  345788899999999


Q ss_pred             CCccCcccc-cccccCCCCCCEEEccCccCccc
Q 001547          891 SHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGK  922 (1056)
Q Consensus       891 s~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~~~  922 (1056)
                      ++|+|.... -..+|+++.|+.+.|.+|++++.
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999998432 25789999999999999999953

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.83  E-value=3.5e-09  Score=102.62  Aligned_cols=39  Identities=31%  Similarity=0.523  Sum_probs=6.3

Q ss_pred             cCCCCCcEEecCCCcccCccChhhhc-CCCCCceEeCCCCCCC
Q 001547          132 ARLSSLTSLHLSHNILQGSIDAKEFD-SLSNLEELDINDNEID  173 (1056)
Q Consensus       132 ~~l~~L~~L~Ls~n~l~~~i~~~~l~-~L~~L~~L~Ls~n~l~  173 (1056)
                      .+..++++|+|++|.+. .|.  .++ .+.+|+.||+++|.++
T Consensus        16 ~n~~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~   55 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQIT   55 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S
T ss_pred             ccccccccccccccccc-ccc--chhhhhcCCCEEECCCCCCc
Confidence            34445666666666665 343  343 4556666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=6e-09  Score=82.80  Aligned_cols=60  Identities=50%  Similarity=0.630  Sum_probs=42.2

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccC
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL  919 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  919 (1056)
                      +|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466777777777755556677777777777777777766666777777777777777764

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.70  E-value=2.7e-09  Score=122.06  Aligned_cols=246  Identities=28%  Similarity=0.270  Sum_probs=131.5

Q ss_pred             ccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEc
Q 001547          614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI  693 (1056)
Q Consensus       614 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L  693 (1056)
                      ..++.+.+..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++++|.++...  .+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            344444444444442 122344555666666666666522 222455566666666666665432  2344555666666


Q ss_pred             ccCcCcccCCCCCCCCcccEEEcCCcccccccCcccccCCCCccEEEccCccCCcccc-hhhhccCCCCEEEcCCCcccc
Q 001547          694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEG  772 (1056)
Q Consensus       694 s~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~  772 (1056)
                      ++|.++..                        .  .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus       148 ~~N~i~~~------------------------~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  148 SGNLISDI------------------------S--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             ccCcchhc------------------------c--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            66665421                        1  23445666667777776664433 2 4566667777777776652


Q ss_pred             cCChhccCCCCCCEEEccCCcCcccCCccccccccccccCCCCCCCCCCccccccCCCCCchhhhhheeeeecccccccc
Q 001547          773 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA  852 (1056)
Q Consensus       773 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  852 (1056)
                        ...+..+..+..+++..|.++..-+.....                                                
T Consensus       201 --i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~------------------------------------------------  230 (414)
T KOG0531|consen  201 --IEGLDLLKKLVLLSLLDNKISKLEGLNELV------------------------------------------------  230 (414)
T ss_pred             --ccchHHHHHHHHhhcccccceeccCcccch------------------------------------------------
Confidence              223333444444566666554322110000                                                


Q ss_pred             ccchhccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCccc---CCcc-cc
Q 001547          853 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LV  928 (1056)
Q Consensus       853 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~---ip~~-l~  928 (1056)
                           ...|+.+++++|.+. .++..+..+..+..|++++|+++..-  .+.....+..+..+.|++...   .+.. ..
T Consensus       231 -----~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (414)
T KOG0531|consen  231 -----MLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITS  302 (414)
T ss_pred             -----hHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccccc
Confidence                 002667777777776 34455666777777777777776432  234445666667777766521   1111 44


Q ss_pred             CCCCCCeEEcccCcccccCC
Q 001547          929 DLNTLAIFIVAYNNLSGKIP  948 (1056)
Q Consensus       929 ~l~~L~~l~ls~N~l~g~ip  948 (1056)
                      ....+..+.+.+|......+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  303 AAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccccccccccCccccccc
Confidence            55667777777776665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.70  E-value=8e-09  Score=125.67  Aligned_cols=104  Identities=25%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             CCCCEeeCCCCC--CCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcCCC
Q 001547           83 QQLESLDLSWNN--IAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS  160 (1056)
Q Consensus        83 ~~L~~L~Ls~~~--~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~  160 (1056)
                      +.|++|=+.+|.  +.....    +.|..+++|++|||++|.-.+.+|.+++.|.+||+|+++++.+. .+|. .+++|.
T Consensus       545 ~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk  618 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLK  618 (889)
T ss_pred             CccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHH
Confidence            357777777764  333332    44667888888888887766678888888888888888888877 7776 788888


Q ss_pred             CCceEeCCCCCCCccccccccccccceeecCCC
Q 001547          161 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS  193 (1056)
Q Consensus       161 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~  193 (1056)
                      +|.+||+..+.-.... +.....+..|++|.+.
T Consensus       619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLP  650 (889)
T ss_pred             hhheeccccccccccc-cchhhhcccccEEEee
Confidence            8888888776543332 2333334444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.1e-08  Score=81.22  Aligned_cols=61  Identities=39%  Similarity=0.572  Sum_probs=57.5

Q ss_pred             CcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcccCcc
Q 001547          883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL  943 (1056)
Q Consensus       883 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls~N~l  943 (1056)
                      ++|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|+++++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999988888999999999999999999988889999999999999999985

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.66  E-value=2.6e-09  Score=112.03  Aligned_cols=254  Identities=19%  Similarity=0.167  Sum_probs=144.5

Q ss_pred             CCcc-cccceeeCCCCCceEEEeccccccCCccccccccCcCC-CCCCEeeCCCCCCCCccccccchhccCCCCCcEEeC
Q 001547           41 TDCC-QWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPF-QQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDL  118 (1056)
Q Consensus        41 ~~~c-~w~gv~C~~~~~~v~~l~l~~~~~~~~~~~~~~~f~~l-~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~L  118 (1056)
                      ..|| .|++-.=|.  +.=..+||.....+.+...-..+..+. -.|+.|.+.++.-.+..+-  -..-.+++++++|++
T Consensus        96 a~~c~~~n~~AlD~--~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~ssl--rt~~~~CpnIehL~l  171 (483)
T KOG4341|consen   96 AQCCTMWNKLALDG--SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSL--RTFASNCPNIEHLAL  171 (483)
T ss_pred             HHHHHHhhhhhhcc--ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchh--hHHhhhCCchhhhhh
Confidence            3456 577755543  334455665442221111111222222 3577888887764443321  123457888888888


Q ss_pred             CCCc-CCCccchhhc-CCCCCcEEecCCCcccCccChh-hhcCCCCCceEeCCCCC-CCccccccccccccceeecCCCC
Q 001547          119 RGNL-CNNSILSSVA-RLSSLTSLHLSHNILQGSIDAK-EFDSLSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSG  194 (1056)
Q Consensus       119 s~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~-~l~~L~~L~~L~Ls~n~-l~~~~~~~~~~~~~~l~~L~L~~  194 (1056)
                      .++. +++....+++ .+++|++|++..|......... -...+++|++|+++++. +++......+++++.++.+.+.+
T Consensus       172 ~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kG  251 (483)
T KOG4341|consen  172 YGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKG  251 (483)
T ss_pred             hcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcc
Confidence            8885 3333333444 5889999999886433232222 23568999999999885 56655556677777766665554


Q ss_pred             CccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCcc
Q 001547          195 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE  273 (1056)
Q Consensus       195 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~  273 (1056)
                      +..-........-+..+-+.++++..|...+.......-..+..|++|..+++. +++.....++...++|+.|.+++|+
T Consensus       252 C~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~  331 (483)
T KOG4341|consen  252 CLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ  331 (483)
T ss_pred             cccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc
Confidence            443333333334445566677777777554433222233457788888888765 4555566777767899999999887


Q ss_pred             ccCcccCCCC-Ccccccceecchhhh
Q 001547          274 VNGVLSGQGF-PHFKSLEHLDMRFAR  298 (1056)
Q Consensus       274 ~~~~~~~~~~-~~l~~L~~L~l~~~~  298 (1056)
                      .-+..-.+.+ .+.+.|+.+++..+.
T Consensus       332 ~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  332 QFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hhhhhhhhhhhcCChhhhhhcccccc
Confidence            4332221111 334455555544443

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.58  E-value=4.7e-08  Score=70.65  Aligned_cols=34  Identities=35%  Similarity=0.788  Sum_probs=25.8

Q ss_pred             HHHHHHHHhhhhcCCC-CCCC-----CC--CCcccccceeeC
Q 001547           19 DHERFALLRLKHFFTD-PYDK-----GA--TDCCQWEGVECS   52 (1056)
Q Consensus        19 ~~~~~all~~k~~~~~-~~~~-----~~--~~~c~w~gv~C~   52 (1056)
                      ++|++||++||+++.+ |.+.     .+  ++||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            6899999999999984 5333     22  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.57  E-value=3.8e-08  Score=119.82  Aligned_cols=127  Identities=30%  Similarity=0.320  Sum_probs=67.4

Q ss_pred             CCCEEEccCccCCCccchHHhhcCCCCCEEEccCCc--CCccccccccCCccccceecccccccccCCccccCCCCCcEE
Q 001547          566 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS--LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL  643 (1056)
Q Consensus       566 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L  643 (1056)
                      ..+...+-+|.+. .++...  .++.|+.|-+..|.  +.......|..++.|++||+++|.-.+.+|..++.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3444444444443 333332  23445555555543  332233334455556666666555555566666666666666


Q ss_pred             ECCCCcCCCCCCccccCCCCCcEEEcCCCcccCCCcccccCCCCCcEEEcccC
Q 001547          644 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN  696 (1056)
Q Consensus       644 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n  696 (1056)
                      ++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            66666665 55666666666666666655544444555555666666665443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.50  E-value=2.1e-08  Score=114.74  Aligned_cols=196  Identities=30%  Similarity=0.404  Sum_probs=109.5

Q ss_pred             CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccChhhhcCCC
Q 001547           81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLS  160 (1056)
Q Consensus        81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~  160 (1056)
                      .+..++.+++..|.+....     ..+..+++|++|++.+|.+.. +...+..+++|++|++++|.|. .+.  .+..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~--~l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE--GLSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc--chhhcc
Confidence            4566666667777766522     336677888888888887753 2222667788888888888877 444  466777


Q ss_pred             CCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccccccccCCCccc
Q 001547          161 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE  240 (1056)
Q Consensus       161 ~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~  240 (1056)
                      .|+.|++++|.+....   .+..+..++.++++++.+..+... . +..+.+++.+.+.+|.+...    +.+..+..+.
T Consensus       141 ~L~~L~l~~N~i~~~~---~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i----~~~~~~~~l~  211 (414)
T KOG0531|consen  141 LLKELNLSGNLISDIS---GLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREI----EGLDLLKKLV  211 (414)
T ss_pred             chhhheeccCcchhcc---CCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcc----cchHHHHHHH
Confidence            7888888888776553   222255556666666555544332 1 35556666666666655433    2233333444


Q ss_pred             EEecCCCCCCcchhhhhhhcCC--CCcEEeccCccccCcccCCCCCcccccceecchhhhh
Q 001547          241 YLTLDDSSLHISLLQSIGSIFP--SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI  299 (1056)
Q Consensus       241 ~L~L~~~~~~~~~~~~l~~~l~--~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  299 (1056)
                      .+++..|.+...-+  +.. .+  +|+.++++++.+....  .++..++.++.+++..+++
T Consensus       212 ~~~l~~n~i~~~~~--l~~-~~~~~L~~l~l~~n~i~~~~--~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  212 LLSLLDNKISKLEG--LNE-LVMLHLRELYLSGNRISRSP--EGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             HhhcccccceeccC--ccc-chhHHHHHHhcccCcccccc--ccccccccccccchhhccc
Confidence            44555554432111  111 11  2556666666544321  2344455555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.1e-08  Score=102.40  Aligned_cols=91  Identities=30%  Similarity=0.260  Sum_probs=72.5

Q ss_pred             CCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccCh-hhhcCCCC
Q 001547           83 QQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDA-KEFDSLSN  161 (1056)
Q Consensus        83 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~L~~  161 (1056)
                      ..|++||||+..|+.....   ..++.+.+|+.|.|.++.+.+.+...++.-.+|+.|||+.+.-..+... -.+.+++.
T Consensus       185 sRlq~lDLS~s~it~stl~---~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLH---GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHH---HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            3799999999988765532   3467899999999999999999999999999999999998763222221 14688999


Q ss_pred             CceEeCCCCCCCccc
Q 001547          162 LEELDINDNEIDNVE  176 (1056)
Q Consensus       162 L~~L~Ls~n~l~~~~  176 (1056)
                      |++|++++|.+....
T Consensus       262 L~~LNlsWc~l~~~~  276 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEK  276 (419)
T ss_pred             HhhcCchHhhccchh
Confidence            999999999876554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1e-08  Score=102.63  Aligned_cols=135  Identities=24%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             CCcEEeCCCCcCCCc-cchhhcCCCCCcEEecCCCcccCccChhhhcCCCCCceEeCCCCCCCccccccccccccceeec
Q 001547          112 KLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL  190 (1056)
Q Consensus       112 ~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L  190 (1056)
                      .|++||||...++.. +-.-++.+.+|+.|.|.++.+...|-. .+++-.+|+.|+++.+.--                 
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~-----------------  247 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGF-----------------  247 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeecccccccc-----------------
Confidence            477777777666533 233355677777777777777655554 6677777777777765411                 


Q ss_pred             CCCCCccccccchhhhcCCCCCCcEEecCCCCCCCccccccccc-CCCcccEEecCCCC--CCcchhhhhhhcCCCCcEE
Q 001547          191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELH-NFTNLEYLTLDDSS--LHISLLQSIGSIFPSLKNL  267 (1056)
Q Consensus       191 ~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~l~-~l~~L~~L~L~~~~--~~~~~~~~l~~~l~~L~~L  267 (1056)
                              ...+..-.+.+++.|.+|+|+||....+.-. .... =-++|..|+|+++.  +...-...+...+|+|..|
T Consensus       248 --------t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt-v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L  318 (419)
T KOG2120|consen  248 --------TENALQLLLSSCSRLDELNLSWCFLFTEKVT-VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL  318 (419)
T ss_pred             --------chhHHHHHHHhhhhHhhcCchHhhccchhhh-HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence                    1111112356677777777777766544321 1111 12456666676653  2222333444446666666


Q ss_pred             eccCcc
Q 001547          268 SMSGCE  273 (1056)
Q Consensus       268 ~L~~~~  273 (1056)
                      ||++|.
T Consensus       319 DLSD~v  324 (419)
T KOG2120|consen  319 DLSDSV  324 (419)
T ss_pred             cccccc
Confidence            666664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.2e-07  Score=95.21  Aligned_cols=63  Identities=35%  Similarity=0.496  Sum_probs=34.8

Q ss_pred             CCCCCcEEeCCCCcCCCc--cchhhcCCCCCcEEecCCCcccCccChhhh-cCCCCCceEeCCCCCCC
Q 001547          109 RLSKLKKLDLRGNLCNNS--ILSSVARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEID  173 (1056)
Q Consensus       109 ~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~L~~L~~L~Ls~n~l~  173 (1056)
                      ..++++.|||.+|.+++.  +...+.++|+|++|+|+.|++...|..  + .-+.+|++|-|.+..+.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--CcccccceEEEEEcCCCCC
Confidence            355666666666666543  333455666666666666666533321  1 23456666666555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=2.3e-07  Score=91.84  Aligned_cols=92  Identities=21%  Similarity=0.334  Sum_probs=50.2

Q ss_pred             CCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCC---Cc-------cchhhcCCCCCcEEecCCCcccCcc
Q 001547           82 FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCN---NS-------ILSSVARLSSLTSLHLSHNILQGSI  151 (1056)
Q Consensus        82 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~---~~-------~~~~l~~l~~L~~L~Ls~n~l~~~i  151 (1056)
                      +..+..+|||+|.|..-........+.+-++|++.++++-...   +.       +.+.+..|++|+..+||+|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            3445555555555544433333344555566666666654211   11       2234556677777777777766444


Q ss_pred             Ch---hhhcCCCCCceEeCCCCCCC
Q 001547          152 DA---KEFDSLSNLEELDINDNEID  173 (1056)
Q Consensus       152 ~~---~~l~~L~~L~~L~Ls~n~l~  173 (1056)
                      |+   +.++.-+.|.+|.+++|.+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC
Confidence            42   23566677777777777553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=2.8e-07  Score=91.26  Aligned_cols=245  Identities=21%  Similarity=0.190  Sum_probs=146.5

Q ss_pred             CceEEEeccccccCCccc-cccccCcCCCCCCEeeCCCCCCCCcccc------ccchhccCCCCCcEEeCCCCcCCCccc
Q 001547           56 GRVIGLYLSETYSGEYWY-LNASLFTPFQQLESLDLSWNNIAGCAEN------EGLERLSRLSKLKKLDLRGNLCNNSIL  128 (1056)
Q Consensus        56 ~~v~~l~l~~~~~~~~~~-~~~~~f~~l~~L~~L~Ls~~~~~~~~~~------~~l~~l~~l~~L~~L~Ls~n~~~~~~~  128 (1056)
                      ..++++||||+.++..-. --...+++-++|++.++|.-........      ..+.++-++++|+..+||+|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            458999999997653311 0122356678999999997644333221      123567799999999999999987766


Q ss_pred             hh----hcCCCCCcEEecCCCcccCccChhh-------------hcCCCCCceEeCCCCCCCccccccc---ccccccee
Q 001547          129 SS----VARLSSLTSLHLSHNILQGSIDAKE-------------FDSLSNLEELDINDNEIDNVEVSRG---YRGLRKLK  188 (1056)
Q Consensus       129 ~~----l~~l~~L~~L~Ls~n~l~~~i~~~~-------------l~~L~~L~~L~Ls~n~l~~~~~~~~---~~~~~~l~  188 (1056)
                      +.    |++-+.|+||.+++|.+. .+.-..             ..+-|.|++.+...|.+........   +....+++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            54    567899999999999874 433222             2346889999999998765543222   23334666


Q ss_pred             ecCCCCCccccc--cchh-hhcCCCCCCcEEecCCCCCCCccc--ccccccCCCcccEEecCCCCCCcchhhhhhh----
Q 001547          189 SLDLSGVGIRDG--NKLL-QSMGSFPSLNTLHLESNNFTATLT--TTQELHNFTNLEYLTLDDSSLHISLLQSIGS----  259 (1056)
Q Consensus       189 ~L~L~~~~~~~~--~~~~-~~l~~l~~L~~L~L~~n~~~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~----  259 (1056)
                      .+.+..+++..-  ...+ ..+..+++|+.|||..|.++-.-.  ....+..-+.|++|.+..|-++......+..    
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            666666666532  2222 145666777777777777653211  1123333445777777777655443332221    


Q ss_pred             -cCCCCcEEeccCccccCcccCC------CCCcccccceecchhhhhcc
Q 001547          260 -IFPSLKNLSMSGCEVNGVLSGQ------GFPHFKSLEHLDMRFARIAL  301 (1056)
Q Consensus       260 -~l~~L~~L~L~~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~  301 (1056)
                       ..|+|..|-..+|...+.+-..      .-.+++-|..+.+.+|++..
T Consensus       269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence             2466677766666544332211      11234445555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=1.1e-06  Score=88.30  Aligned_cols=115  Identities=28%  Similarity=0.403  Sum_probs=67.1

Q ss_pred             hcCCCCCcEEecCCCcccCccChhhh-cCCCCCceEeCCCCCCCccccccccccccceeecCCCCCccccccchhhhcCC
Q 001547          131 VARLSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS  209 (1056)
Q Consensus       131 l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~~~~l~~  209 (1056)
                      +.....++.|-+.++.+...-....| ...+.+++|||.+|.++                         ++++....+..
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-------------------------dWseI~~ile~   95 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-------------------------DWSEIGAILEQ   95 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-------------------------cHHHHHHHHhc
Confidence            33344455555555555422222223 23455666666655554                         33344455777


Q ss_pred             CCCCcEEecCCCCCCCcccccccc-cCCCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCcc
Q 001547          210 FPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE  273 (1056)
Q Consensus       210 l~~L~~L~L~~n~~~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~  273 (1056)
                      +|.|+.|+|+.|.+...+.   .+ .+.++|+.|-|.+..+.=.-..++...+|.+++|.++.|.
T Consensus        96 lP~l~~LNls~N~L~s~I~---~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen   96 LPALTTLNLSCNSLSSDIK---SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             CccceEeeccCCcCCCccc---cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            8888888888888876654   22 4677888888887766433333333337777777777773

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=2.9e-08  Score=110.85  Aligned_cols=111  Identities=24%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             cCCCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcccccCCcccccCC
Q 001547          336 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH  415 (1056)
Q Consensus       336 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l  415 (1056)
                      .++.-++.|+.|+|++|+++...  .+..|++|++|||++|.+. .+|.-....+. |+.|.+++|.++.   ...+.++
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~L  253 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIENL  253 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHhh
Confidence            35556677778888888776543  5677778888888888776 55444444455 7777777777652   2345677


Q ss_pred             CCccEEeccCccccccccccCCCCCccceeEEEccCCCC
Q 001547          416 SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYG  454 (1056)
Q Consensus       416 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~~  454 (1056)
                      ++|+.||++.|-+.+... ...+..+..|+.|.+.+|+.
T Consensus       254 ksL~~LDlsyNll~~hse-L~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  254 KSLYGLDLSYNLLSEHSE-LEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhccchhHhhhhcchh-hhHHHHHHHHHHHhhcCCcc
Confidence            777777777777664322 12223344566667766643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=7.8e-08  Score=85.19  Aligned_cols=87  Identities=21%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  939 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  939 (1056)
                      .++.|+|++|+++ .+|+++..++.|+.||++.|.+. ..|..+..+.+|..||..+|.+. +||..+..-+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4556666666666 56666777777777777777666 55666666666666666666665 455443322333333444


Q ss_pred             cCcccccCCC
Q 001547          940 YNNLSGKIPE  949 (1056)
Q Consensus       940 ~N~l~g~ip~  949 (1056)
                      ++++.+..|.
T Consensus       155 nepl~~~~~~  164 (177)
T KOG4579|consen  155 NEPLGDETKK  164 (177)
T ss_pred             CCcccccCcc
Confidence            4445444443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.11  E-value=1.8e-07  Score=98.57  Aligned_cols=217  Identities=19%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             CCCCCcEEecCCCCCCCcccccccccCCCcccEEecCCCCC-CcchhhhhhhcCCCCcEEeccCccccCccc-CCCCCcc
Q 001547          209 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLS-GQGFPHF  286 (1056)
Q Consensus       209 ~l~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~-~~~~~~l  286 (1056)
                      .+++|++|+++||.-...--......+++.++.+.+.+|.- .......+....+-+.++++..|....... ...-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            45566666666664322211112334555566665555531 111222222224445556655653222111 1111335


Q ss_pred             cccceecchhhhhccccchhhhhcCCccccceeeccCCcCCCCCccccccCCCCCCCccEEEccCCccc--ccccccccC
Q 001547          287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR--GSLPWCLAN  364 (1056)
Q Consensus       287 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~~p~~~~~  364 (1056)
                      ..|+.++.+.+.. ..........+.+++|+.+.++.++......  +..--.+.+.|+.+++..+...  +.+...=.+
T Consensus       294 ~~lq~l~~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~  370 (483)
T KOG4341|consen  294 HALQVLCYSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRG--FTMLGRNCPHLERLDLEECGLITDGTLASLSRN  370 (483)
T ss_pred             hHhhhhcccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhh--hhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence            5666666665544 2233445566778888888888887432211  0001145778888988888632  222222346


Q ss_pred             CCCCcEEECcCCcCcCcC----CCcccccCCCCcEEEccCCcccccCCcccccCCCCccEEeccCccc
Q 001547          365 TTSLRILDVSFNQLTGSI----SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI  428 (1056)
Q Consensus       365 l~~L~~L~Ls~n~l~~~i----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~l~~n~l  428 (1056)
                      ++.|++|.+++|.....-    ....-..+..|+.+.++++........+.+..++.|+.+++-.+.-
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence            889999999888642110    0111234677899999999877666666778888888888776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.11  E-value=1.4e-07  Score=105.50  Aligned_cols=176  Identities=27%  Similarity=0.226  Sum_probs=103.7

Q ss_pred             ChhhhhcCCCCcEEEccCCcccccCCccccCC-CCCCEEEccCccCC----------CccchHHhhcCCCCCEEEccCCc
Q 001547          533 PVEIGDILPSLVYFNISMNALDGSIPSSFGNV-IFLQFLDLSNNKLT----------GEIPDHLAMCCVNLEFLSLSNNS  601 (1056)
Q Consensus       533 p~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~i~~~~~~~l~~L~~L~L~~n~  601 (1056)
                      |..++. +.+|+.|.+.++.+..  ...+..+ ..|++|.- .|.+.          |++....  ..-.|...+.+.|.
T Consensus       102 pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~  175 (1096)
T KOG1859|consen  102 PISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNR  175 (1096)
T ss_pred             Cceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccch--hhhhHhhhhcchhh
Confidence            556665 7888888888887752  1111111 12222221 11111          1121111  12346667777777


Q ss_pred             CCccccccccCCccccceecccccccccCCccccCCCCCcEEECCCCcCCCCCCc-cccCCCCCcEEEcCCCcccCCCcc
Q 001547          602 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPV  680 (1056)
Q Consensus       602 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~  680 (1056)
                      +. ....++.-++.|+.|+|++|+++..-  .+..|++|++|||++|.+. .+|. ....+. |+.|.+++|.++..  .
T Consensus       176 L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~  248 (1096)
T KOG1859|consen  176 LV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--R  248 (1096)
T ss_pred             HH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--h
Confidence            76 34456666778888888888887442  6777888888888888876 3333 333444 88888888877632  3


Q ss_pred             cccCCCCCcEEEcccCcCcccCCC--CCCCCcccEEEcCCccc
Q 001547          681 EFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNML  721 (1056)
Q Consensus       681 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~~~L~~L~l~~n~~  721 (1056)
                      .+.++.+|+.||+++|-+.+.-.-  ......|+.|+|.+|.+
T Consensus       249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            466778888888888876643211  11234666677777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=1.3e-05  Score=95.41  Aligned_cols=160  Identities=20%  Similarity=0.311  Sum_probs=113.9

Q ss_pred             CCCCcEEeCCCCcC-CCccchhhcC-CCCCcEEecCCCcccCccChhhhcCCCCCceEeCCCCCCCccccccccccccce
Q 001547          110 LSKLKKLDLRGNLC-NNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL  187 (1056)
Q Consensus       110 l~~L~~L~Ls~n~~-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~i~~~~l~~L~~L~~L~Ls~n~l~~~~~~~~~~~~~~l  187 (1056)
                      -.+|++||+++... ....|..++. ||+|++|.+++-.+...--.....++++|+.||+|+++++..   ...+.+++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence            45789999988653 3334555654 899999999887665321122457889999999999888765   456678888


Q ss_pred             eecCCCCCccccccchhhhcCCCCCCcEEecCCCCCCCcccc----cccccCCCcccEEecCCCCCCcchhhhhhhcCCC
Q 001547          188 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT----TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS  263 (1056)
Q Consensus       188 ~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~  263 (1056)
                      +.|.+.+..+..... +..+..+++|+.||+|..........    .+.-..+++|+.||.+++.+.....+.+-+..|+
T Consensus       198 q~L~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHhccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            888888887766433 34577899999999998766543210    1233458899999999999888888777766788


Q ss_pred             CcEEeccCcc
Q 001547          264 LKNLSMSGCE  273 (1056)
Q Consensus       264 L~~L~L~~~~  273 (1056)
                      |+.+..-+|.
T Consensus       277 L~~i~~~~~~  286 (699)
T KOG3665|consen  277 LQQIAALDCL  286 (699)
T ss_pred             Hhhhhhhhhh
Confidence            8877765543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=1.7e-06  Score=76.85  Aligned_cols=68  Identities=21%  Similarity=0.244  Sum_probs=37.5

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccC
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD  929 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~  929 (1056)
                      .|+.|+++.|.+. ..|..+..|.++..|+..+|.+. .||..+---+.....++.++.+.+.-|..+..
T Consensus       101 aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  101 ALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             HhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccc
Confidence            4566666666665 45555555666666666666665 34433222233334455666776666654443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=5.6e-05  Score=82.61  Aligned_cols=56  Identities=16%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CcCCEEeCCCccCcccccccccCCCCCCEEEccCcc------CcccCCccccCCCCCCeEEcccCc
Q 001547          883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK------LSGKIPRQLVDLNTLAIFIVAYNN  942 (1056)
Q Consensus       883 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~------l~~~ip~~l~~l~~L~~l~ls~N~  942 (1056)
                      ++|+.|++++|... ..|..+.  .+|+.|+++.|.      -.+.+|+.+ .+....++.++.+.
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~  217 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV  217 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence            46777777777655 3444443  467777777663      122455554 44444444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=2.8e-05  Score=56.22  Aligned_cols=36  Identities=42%  Similarity=0.699  Sum_probs=16.9

Q ss_pred             cCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547          884 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  920 (1056)
Q Consensus       884 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  920 (1056)
                      +|++|++++|+|+ .+|..++++++|+.||+++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555555 33334555555555555555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.65  E-value=4.2e-05  Score=55.28  Aligned_cols=37  Identities=43%  Similarity=0.742  Sum_probs=32.4

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcc
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG  897 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  897 (1056)
                      +|++|++++|+++ .+|+.++++++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            6899999999999 678789999999999999999994

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=4.2e-05  Score=91.28  Aligned_cols=84  Identities=19%  Similarity=0.339  Sum_probs=42.2

Q ss_pred             CCCcEEecCCCCCCCcccccccccCCCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccc
Q 001547          211 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE  290 (1056)
Q Consensus       211 ~~L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~  290 (1056)
                      .+|++|++++........+..--..+|+|+.|.+++-.+.......+...+|+|..||++++++...   .++.++++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence            4566666666443322111111223566666666665554444444444466666666666655432   3455555555


Q ss_pred             eecchhh
Q 001547          291 HLDMRFA  297 (1056)
Q Consensus       291 ~L~l~~~  297 (1056)
                      .|.+++.
T Consensus       199 ~L~mrnL  205 (699)
T KOG3665|consen  199 VLSMRNL  205 (699)
T ss_pred             HHhccCC
Confidence            5554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.44  E-value=0.00057  Score=74.93  Aligned_cols=32  Identities=31%  Similarity=0.316  Sum_probs=14.8

Q ss_pred             CCCcEEECCCCcCCCCCCccccCCCCCcEEEcCCC
Q 001547          638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN  672 (1056)
Q Consensus       638 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n  672 (1056)
                      ++|++|++++|... ..|..+.  .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            35555655555543 2232222  35555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00033  Score=67.33  Aligned_cols=87  Identities=28%  Similarity=0.295  Sum_probs=59.4

Q ss_pred             hcCCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccc-cccccCCccc
Q 001547          538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNL  616 (1056)
Q Consensus       538 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  616 (1056)
                      ....+...+|+++|.+..  -..|..++.|.+|.+++|+|+ .|...+...+++|+.|.+.+|.+.... -..+..+|.|
T Consensus        39 ~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L  115 (233)
T KOG1644|consen   39 ATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL  115 (233)
T ss_pred             ccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence            335677888888888762  234677888888999999888 676666667788888888888775321 1234455566


Q ss_pred             cceeccccccc
Q 001547          617 RWLLLEGNHFV  627 (1056)
Q Consensus       617 ~~L~l~~n~~~  627 (1056)
                      ++|.+-+|.++
T Consensus       116 ~~Ltll~Npv~  126 (233)
T KOG1644|consen  116 EYLTLLGNPVE  126 (233)
T ss_pred             ceeeecCCchh
Confidence            66666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.12  E-value=0.00084  Score=62.95  Aligned_cols=108  Identities=21%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             chHHhhcCCCCcEEecCCCcCcCcCcCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCCcEEEccCCcccccCCccccC
Q 001547          484 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN  563 (1056)
Q Consensus       484 p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~  563 (1056)
                      +...+.++++|+.+.+.. .+.......+..++.++.+.+.++ +. .++...+..+++++.+.+.. .+.......|..
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence            333445555555555543 333333444445545555555443 32 34444444344455555543 222223334444


Q ss_pred             CCCCCEEEccCccCCCccchHHhhcCCCCCEEEcc
Q 001547          564 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS  598 (1056)
Q Consensus       564 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~  598 (1056)
                      +++|+.+++..+ +. .++...+..+ +|+.+.+.
T Consensus        80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             -TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred             cccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence            444555544433 22 3333333333 44444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.11  E-value=0.00085  Score=64.55  Aligned_cols=66  Identities=24%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCCCCCccEEEccCCcccccccccccCCCCCcEEECcCCcCcCcCCCcccccCCCCcEEEccCCcc
Q 001547          338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF  403 (1056)
Q Consensus       338 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l  403 (1056)
                      |..+++|.+|.+++|+|+..-|.--.-+++|+.|.+.+|.+..--.-..+..+|+|++|.+-+|+.
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV  125 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence            334455555555555555444433333445555555555443111123344455555555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.09  E-value=0.0009  Score=62.72  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             CCCCcEEEccCCcccccCCccccCCCCCCEEEccCccCCCccchHHhhcCCCCCEEEccCCcCCccccccccCCccccce
Q 001547          540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL  619 (1056)
Q Consensus       540 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  619 (1056)
                      +++|+.+.+.. .+.......|.++++|+.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            44455555442 333334444555555555555443 33 44444444444455555543 2222222333344444444


Q ss_pred             ecc
Q 001547          620 LLE  622 (1056)
Q Consensus       620 ~l~  622 (1056)
                      ++.
T Consensus        87 ~~~   89 (129)
T PF13306_consen   87 DIP   89 (129)
T ss_dssp             EET
T ss_pred             ccC
Confidence            443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.00051  Score=69.15  Aligned_cols=88  Identities=26%  Similarity=0.373  Sum_probs=59.2

Q ss_pred             CCCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCC--cCCCccchhhcCCCCCcEEecCCCcccCccChhhhcC
Q 001547           81 PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS  158 (1056)
Q Consensus        81 ~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~  158 (1056)
                      .+..|+.|++.+..++...      .+-.|++|++|++|.|  .+.+.++.....+++|++|++++|++.-.-....+..
T Consensus        41 ~~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~  114 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE  114 (260)
T ss_pred             cccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence            4556666666666555433      2557888888888888  5566666666667888888888888762111224567


Q ss_pred             CCCCceEeCCCCCCCc
Q 001547          159 LSNLEELDINDNEIDN  174 (1056)
Q Consensus       159 L~~L~~L~Ls~n~l~~  174 (1056)
                      +.+|..||+.+|..+.
T Consensus       115 l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTN  130 (260)
T ss_pred             hcchhhhhcccCCccc
Confidence            7778888888776554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.74  E-value=0.00029  Score=83.42  Aligned_cols=85  Identities=21%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             CCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCcc-ccCcccCCCCCcccccceecchhhhhccccchhhhhcCC
Q 001547          235 NFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCE-VNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES  312 (1056)
Q Consensus       235 ~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  312 (1056)
                      .+++|+.|+++.+. +++.....++..+++|++|.+.+|. ++..--......+++|++|+++++....+...... ...
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~  319 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKN  319 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHh
Confidence            34555555555555 4444444444445555555555554 22211111223445555555555444322222222 333


Q ss_pred             ccccceee
Q 001547          313 MPSLKYLS  320 (1056)
Q Consensus       313 ~~~L~~L~  320 (1056)
                      +++++.+.
T Consensus       320 c~~l~~l~  327 (482)
T KOG1947|consen  320 CPNLRELK  327 (482)
T ss_pred             Ccchhhhh
Confidence            55554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.52  E-value=0.00063  Score=80.54  Aligned_cols=169  Identities=22%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             CCCCcEEecCCCC-CCCcccccccccCCCcccEEecCCCCCC-cchhhhhhhcCCCCcEEeccCccccCcccCCCCCccc
Q 001547          210 FPSLNTLHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLH-ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK  287 (1056)
Q Consensus       210 l~~L~~L~L~~n~-~~~~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~  287 (1056)
                      +++|++|.+.+|. ++.. ........+++|++|++++|... +.....+...+++|+.|.+.....           ++
T Consensus       268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-----------c~  335 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-----------CP  335 (482)
T ss_pred             CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------Cc
Confidence            5566666655555 2221 11123344566777777666532 222222233256666554433321           22


Q ss_pred             ccceecchhhhhccccchhhhhcCCccccceeeccCCcCCCCCccccccCCCCCCCccEEEccCCcccccccccccCCCC
Q 001547          288 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS  367 (1056)
Q Consensus       288 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  367 (1056)
                      .++.+.+..................++.++.+.+..+.....+.   ...+..+++|+ ..+         .........
T Consensus       336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~l~gc~~l~-~~l---------~~~~~~~~~  402 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL---ELSLRGCPNLT-ESL---------ELRLCRSDS  402 (482)
T ss_pred             cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch---HHHhcCCcccc-hHH---------HHHhccCCc
Confidence            33333332221111012333444566666666666665322211   01122333331 111         111222233


Q ss_pred             CcEEECcCCcCcCcC-CCccccc-CCCCcEEEccCCccc
Q 001547          368 LRILDVSFNQLTGSI-SSSPLVH-LTSIEELRLSNNHFR  404 (1056)
Q Consensus       368 L~~L~Ls~n~l~~~i-~~~~~~~-l~~L~~L~L~~n~l~  404 (1056)
                      ++.|+++.+... +. .-..... +..++.+++.++...
T Consensus       403 l~~L~l~~~~~~-t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  403 LRVLNLSDCRLV-TDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             cceEecccCccc-cccchHHHhhhhhccccCCccCcccc
Confidence            777777777643 11 0111111 556677777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.38  E-value=0.0017  Score=65.43  Aligned_cols=87  Identities=23%  Similarity=0.327  Sum_probs=41.9

Q ss_pred             ccCCCcccEEecCCC--CCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccceecchhhhhccccchhhhhc
Q 001547          233 LHNFTNLEYLTLDDS--SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG  310 (1056)
Q Consensus       233 l~~l~~L~~L~L~~~--~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  310 (1056)
                      +-.+++|++|.++.|  ++.+.++..... +|+|++|++++|++...-....+..+++|..|++.+|......+.-..+.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~-~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf  139 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEK-APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF  139 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhh-CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence            334555555555555  333333333333 46666666666655432222234455556666666555544444433333


Q ss_pred             CCccccceee
Q 001547          311 ESMPSLKYLS  320 (1056)
Q Consensus       311 ~~~~~L~~L~  320 (1056)
                      .-+++|++|+
T Consensus       140 ~ll~~L~~LD  149 (260)
T KOG2739|consen  140 LLLPSLKYLD  149 (260)
T ss_pred             HHhhhhcccc
Confidence            4444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.0025  Score=64.25  Aligned_cols=59  Identities=24%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             CCcccEEecCCCCCCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccceecchhhhhc
Q 001547          236 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA  300 (1056)
Q Consensus       236 l~~L~~L~L~~~~~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  300 (1056)
                      +.+.++|+..+|.+++.   ++...++.|++|.|+-|+++..-|   +..+++|+.|+|+.|.|.
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccc
Confidence            44556666666665542   222227778888887777665433   455555555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.0073  Score=36.16  Aligned_cols=18  Identities=56%  Similarity=0.874  Sum_probs=7.8

Q ss_pred             CCEEeCCCccCcccccccc
Q 001547          885 IQTLNLSHNNLTGTIPLTF  903 (1056)
Q Consensus       885 L~~L~Ls~N~l~~~~p~~~  903 (1056)
                      |++|||++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            344444444444 344333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.18  E-value=0.0081  Score=35.95  Aligned_cols=18  Identities=50%  Similarity=0.726  Sum_probs=8.9

Q ss_pred             CCEEEccCccCcccCCccc
Q 001547          909 IESLDLSYNKLSGKIPRQL  927 (1056)
Q Consensus       909 L~~LdLs~N~l~~~ip~~l  927 (1056)
                      |++|||++|+++ .+|.+|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555555 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=0.0021  Score=64.74  Aligned_cols=86  Identities=20%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CCCCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhcCCCCCcEEecCCCcccCccC-hhhhcCCC
Q 001547           82 FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID-AKEFDSLS  160 (1056)
Q Consensus        82 l~~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~-~~~l~~L~  160 (1056)
                      +.+.+.|++=+|+++.+..      ..+++.|++|.||-|.|+.  ...+..+++|++|+|..|.|. .+. ..-+.+++
T Consensus        18 l~~vkKLNcwg~~L~DIsi------c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI------CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHHhhhhcccCCCccHHHH------HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            3445556666666654442      4577788888888887764  334677788888888888776 333 23457788


Q ss_pred             CCceEeCCCCCCCccc
Q 001547          161 NLEELDINDNEIDNVE  176 (1056)
Q Consensus       161 ~L~~L~Ls~n~l~~~~  176 (1056)
                      +|+.|-|..|.-.+..
T Consensus        89 sLr~LWL~ENPCc~~a  104 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEA  104 (388)
T ss_pred             hhhhHhhccCCccccc
Confidence            8888888777654443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.46  E-value=0.00047  Score=78.83  Aligned_cols=60  Identities=32%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             ccEEEccCCccccc----ccccccCCCCCcEEECcCCcCcCcCC----CcccccCCCCcEEEccCCccc
Q 001547          344 LQELYIDNNDLRGS----LPWCLANTTSLRILDVSFNQLTGSIS----SSPLVHLTSIEELRLSNNHFR  404 (1056)
Q Consensus       344 L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~  404 (1056)
                      +..+++..+.+.+.    ++..+.....+..++++.|.....-.    ...-.+. .++.+.++.|.++
T Consensus       378 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~  445 (478)
T KOG4308|consen  378 LLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT  445 (478)
T ss_pred             cchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence            55556655554442    33445666777777777776532210    1111233 7788888888765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.05  E-value=0.0007  Score=77.43  Aligned_cols=90  Identities=26%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             CCCEeeCCCCCCCCccccccchhccCCCCCcEEeCCCCcCCCccchhhc----CC-CCCcEEecCCCcccCccC---hhh
Q 001547           84 QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA----RL-SSLTSLHLSHNILQGSID---AKE  155 (1056)
Q Consensus        84 ~L~~L~Ls~~~~~~~~~~~~l~~l~~l~~L~~L~Ls~n~~~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~i~---~~~  155 (1056)
                      .++.|+|.+|.+..........++....+|..|++++|.+.+.....+.    .. ..|++|++..|.+.+.-.   ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3777788888877666555556677778888888888877654333222    22 445667777766653311   123


Q ss_pred             hcCCCCCceEeCCCCCCC
Q 001547          156 FDSLSNLEELDINDNEID  173 (1056)
Q Consensus       156 l~~L~~L~~L~Ls~n~l~  173 (1056)
                      +.....++.+|++.|.+.
T Consensus       168 L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HhcccchhHHHHHhcccc
Confidence            444666677777666653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.83  E-value=0.2  Score=27.73  Aligned_cols=11  Identities=55%  Similarity=0.869  Sum_probs=3.7

Q ss_pred             CCEEEccCccC
Q 001547          909 IESLDLSYNKL  919 (1056)
Q Consensus       909 L~~LdLs~N~l  919 (1056)
                      |+.|||++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.37  E-value=0.21  Score=27.65  Aligned_cols=13  Identities=54%  Similarity=0.802  Sum_probs=5.3

Q ss_pred             cCCEEeCCCccCc
Q 001547          884 RIQTLNLSHNNLT  896 (1056)
Q Consensus       884 ~L~~L~Ls~N~l~  896 (1056)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.47  E-value=0.015  Score=57.21  Aligned_cols=82  Identities=23%  Similarity=0.223  Sum_probs=60.6

Q ss_pred             ccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCcccCCccccCCCCCCeEEcc
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  939 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~l~ls  939 (1056)
                      ..+.||++.|++. .....|.-++.|..|++|.|.+. ..|..++++..+..+++..|.++ ..|.++..++.+.+++.-
T Consensus        43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence            4677888888776 44555667777777888888777 67777777777777777777777 677777777777777777


Q ss_pred             cCccc
Q 001547          940 YNNLS  944 (1056)
Q Consensus       940 ~N~l~  944 (1056)
                      .|.+.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            77653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.66  E-value=0.12  Score=50.24  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=53.2

Q ss_pred             CcEEecCCCCCCCcccccccccCCCcccEEecCCCC-CCcchhhhhhhcCCCCcEEeccCccccCcccCCCCCcccccce
Q 001547          213 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH  291 (1056)
Q Consensus       213 L~~L~L~~n~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~  291 (1056)
                      ++.+|-+++.+..+--  +.+.+++.++.|.+.+|. +.+...+.++...++|+.|++++|.-...--...+.++++|+.
T Consensus       103 IeaVDAsds~I~~eGl--e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGL--EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             EEEEecCCchHHHHHH--HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            4455555555544322  456667777777777775 3334445566667888888888886443333344567777877


Q ss_pred             ecchhhhhcc
Q 001547          292 LDMRFARIAL  301 (1056)
Q Consensus       292 L~l~~~~~~~  301 (1056)
                      |.+.+.....
T Consensus       181 L~l~~l~~v~  190 (221)
T KOG3864|consen  181 LHLYDLPYVA  190 (221)
T ss_pred             HHhcCchhhh
Confidence            7776655443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.50  E-value=0.62  Score=29.09  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=5.3

Q ss_pred             cCCEEeCCCccCc
Q 001547          884 RIQTLNLSHNNLT  896 (1056)
Q Consensus       884 ~L~~L~Ls~N~l~  896 (1056)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3344444444444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.50  E-value=0.62  Score=29.09  Aligned_cols=13  Identities=38%  Similarity=0.721  Sum_probs=5.3

Q ss_pred             cCCEEeCCCccCc
Q 001547          884 RIQTLNLSHNNLT  896 (1056)
Q Consensus       884 ~L~~L~Ls~N~l~  896 (1056)
                      +|+.|+|++|+|+
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            3344444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=83.76  E-value=0.054  Score=53.49  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=55.6

Q ss_pred             hccccCeEEcCCCcccCCCchhccCCCcCCEEeCCCccCcccccccccCCCCCCEEEccCccCc
Q 001547          857 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS  920 (1056)
Q Consensus       857 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  920 (1056)
                      +++.+..||+|.|++. ..|..++++..++.+++.+|+.+ ..|-+++..+.++.+++..|.+.
T Consensus        63 ~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   63 ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence            3557888999999998 78999999999999999999998 88999999999999999999875

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.22  E-value=0.89  Score=28.39  Aligned_cols=21  Identities=48%  Similarity=0.718  Sum_probs=12.8

Q ss_pred             CCCCEEEccCCcCcccCCccc
Q 001547          782 NQLQLLDLSDNNLHGLIPSCF  802 (1056)
Q Consensus       782 ~~L~~L~Ls~N~l~~~~p~~~  802 (1056)
                      ++|+.|+|++|+++...+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.22  E-value=0.89  Score=28.39  Aligned_cols=21  Identities=48%  Similarity=0.718  Sum_probs=12.8

Q ss_pred             CCCCEEEccCCcCcccCCccc
Q 001547          782 NQLQLLDLSDNNLHGLIPSCF  802 (1056)
Q Consensus       782 ~~L~~L~Ls~N~l~~~~p~~~  802 (1056)
                      ++|+.|+|++|+++...+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666665555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1056
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-51
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-27
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-27
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-11
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		8e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 303/683 (44%), Gaps = 82/683 (12%)
Query: 342 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 400 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 457
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 210
Query: 458 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 517
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 267
Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 562
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 563 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 612
                      +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 613 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 730
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 484
Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 790
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 485 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 791 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 840
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 841 IFEFTTKNI-AYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 893
           +      NI +  Y G              LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 894 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 953
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 722
Query: 954 FATFNKSSYDGNPFLCGLPLPIC 976
           F TF  + +  NP LCG PLP C
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPRC 745

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 32/455 (7%)
Query: 542 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVXXXXXXX 597
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 98  SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 598 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 655
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 158 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 656 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 715
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL +K + 
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQ 269
Query: 716 ---LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
              L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  G
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 773 EVPIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFS 826
           E+P+                    G +P    N      TL  S NN S P  P      
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL---- 385
Query: 827 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 886
              P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 887 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 946
            L L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 947 IPEWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 979
           IP+W  +           N F   +P  +  CRSL
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  201 bits (510), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 195/683 (28%), Positives = 303/683 (44%), Gaps = 82/683 (12%)
Query: 342 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399
           A L  L +  N L G +     L + + L+ L+VS N L      S  + L S+E L LS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 400 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 457
            N       +  + +    +LK      N+I+G+++ S  +  +F    L +SSN  +  
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 213
Query: 458 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 517
           T   FL     L+  ++S  K+ G+F +  +   T+L+ L + ++   GP  +P    K 
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 270
Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 562
           L++L ++ N F G IP  +     +L   ++S N   G++P  FG               
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 563 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 612
                      +  L+ LDLS N+ +GE+P+ L                  G I   +  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 613 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
                L+ L L+ N F G+IP +LS CS L  L+L+ N LSG IP  LG+L  L+ + + 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 730
            N LEG IP E   + +L+ L +  N+++G +PS                          
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 487
Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 790
            NC++L  + LS N L G IP WI  L  L+ L L++N+  G +P               
Sbjct: 488 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 791 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 840
               +G IP+     +   + N           N    K    + ++   QG   +++  
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 841 IFEFTTKNI-AYAYQGRVLSLLAG------LDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 893
           +      NI +  Y G              LD+S N L G+IP +IG++  +  LNL HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 894 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 953
           +++G+IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725
Query: 954 FATFNKSSYDGNPFLCGLPLPIC 976
           F TF  + +  NP LCG PLP C
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPRC 748

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/455 (28%), Positives = 208/455 (45%), Gaps = 32/455 (7%)
Query: 542 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 597
           SL   ++S N+L G + +  S G+   L+FL++S+N L   G++   L +  +       
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 598 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 655
                  ++   + S     L+ L + GN   G++   +S+C +L+ L +++NN S  IP
Sbjct: 161 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 656 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 715
            +LG+   LQH+ +  N L G           L++L+IS N   G +P    PL +K + 
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP----PLPLKSLQ 272
Query: 716 ---LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
              L++N   G++ +     C +L  LDLS N+  G++P +    S L  L L+ NN  G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 773 EVPIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFS 826
           E+P+                    G +P    N      TL  S NN S P  P      
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL---- 388
Query: 827 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ 886
              P+ ++++  L+   FT K           S L  L LS N L G IP  +G+L++++
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 887 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 946
            L L  N L G IP     ++ +E+L L +N L+G+IP  L +   L    ++ N L+G+
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 947 IPEWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 979
           IP+W  +           N F   +P  +  CRSL
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 49/243 (20%)
Query: 557 IPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRN 615
           IPSS  N+ +L FL +   N L G IP  +A                          L  
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 616 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
           L +L +   +  G IP  LS+  +L  L  + N LSG +P  + +L  L  I    N + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 676 GPIPVEFCRLDSL-QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ---------- 724
           G IP  +     L   + IS N ++G +P  F  L++  V LS+NML G           
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 725 ------LKEGTFFN------CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
                  K    F+        +L  LDL  N + G++P  +  L  L  LN++ NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 773 EVP 775
           E+P
Sbjct: 283 EIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 137/353 (38%), Gaps = 113/353 (32%)
Query: 645 LNNNNLSG-------KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDN 696
           +NN +LSG        IP  L NL  L  + +   N+L GPIP    +L  L  L I+  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 697 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 756
           N+SG++P                    Q+K        +LVTLD SYN L+G++P  I  
Sbjct: 112 NVSGAIPDFL----------------SQIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 757 LSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSS 816
           L  L  +    N + G +P                                 +SY + S 
Sbjct: 148 LPNLVGITFDGNRISGAIP---------------------------------DSYGSFSK 174
Query: 817 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL-----SLLAGLDLSCNKL 871
                 TS +IS  +  +  KI     F   N+A+    R +     S+L G D +  K+
Sbjct: 175 ----LFTSMTIS--RNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 872 VGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
             H+          ++G    +  L+L +N + GT+P   + L+ + SL++S+N L G+I
Sbjct: 227 --HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 976
           P+                               F+ S+Y  N  LCG PLP C
Sbjct: 285 PQG-------------------------GNLQRFDVSAYANNKCLCGSPLPAC 312

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 609 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
            IFS  N++   + G   V  +  S  K S    L  +NN L+  +    G+L  L+ ++
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 669 MPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 724
           +  N L+    I     ++ SLQ LDIS N++S       C +  S+  +++S N+L   
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411
Query: 725 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 775
               T F C    +  LDL  N +  SIP  +  L  L  LN+A N L+  VP
Sbjct: 412 --TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 610 IFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
           +F+  N++ L +    F+  + P S    SS   L    N  +  + +    LK LQ ++
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPS---PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 669 MPKNHLEGPIPVEFC--RLDSLQILDISDNNISGSL--PSCFYPLSIKQVHLSKNMLHGQ 724
           + +N L+    V      + SL+ LD+S N+++      +C +  SI  ++LS NML   
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--- 440
Query: 725 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
              G+ F C    +  LDL  N +  SIP  +  L  L  LN+A N L+ 
Sbjct: 441 --TGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1056
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-167
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-59
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-86
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-74
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-64
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-61
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-53
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-59
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-58
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-43
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-57
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-51
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-27
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-17
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-15
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-12
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-14
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-11
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  509 bits (1313), Expect = e-167
 Identities = 216/799 (27%), Positives = 342/799 (42%), Gaps = 111/799 (13%)

Query: 187 LKSLDLSGVGIR-DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLD 245
           + S+DLS   +    + +  S+ S   L +L L +++   +++         +L  L L 
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS---GFKCSASLTSLDLS 108

Query: 246 DSSLH--ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNT 303
            +SL   ++ L S+GS    LK L++S   ++      G     SLE LD+    I+   
Sbjct: 109 RNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 304 SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 363
               ++ +    LK+L++SG+ +   S  +    +    +L+ L + +N+    +P+ L 
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKI---SGDV---DVSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 364 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 423
           + ++L+ LD+S N+L+G  S + +   T ++ L +S+N F  P+   P      L+    
Sbjct: 221 DCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSL 276

Query: 424 KNNEINGEINESHSLTPKFQLKSLSLSSNY--GDSVTFPKFLYHQHELKEAELSHIKMIG 481
             N+  GEI +  S      L  L LS N+  G     P F      L+   LS     G
Sbjct: 277 AENKFTGEIPDFLSGACD-TLTGLDLSGNHFYG---AVPPFFGSCSLLESLALSSNNFSG 332

Query: 482 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQGHIPVEIGDI- 539
           E P   L     L+ L L  +  +G     + +    L  LD+S+NNF G I   +    
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
             +L    +  N   G IP +  N   L  L LS N L+G IP  L      L  L L  
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWL 451

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           N L+G I   +  ++ L  L+L+ N   GEIP  LS C++L  + L+NN L+G+IP+W+G
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
            L+ L  + +  N   G IP E     SL  LD++ N  +G++P+               
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM------------- 558

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN--NLEGEVPIQ 777
                      F  S      ++ N++ G    +I         + A N    +G    Q
Sbjct: 559 -----------FKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603

Query: 778 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 837
           L RL+     +++     G     FDN                                 
Sbjct: 604 LNRLSTRNPCNITSRVYGGHTSPTFDN--------------------------------- 630

Query: 838 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 897
                                  +  LD+S N L G+IP +IG++  +  LNL HN+++G
Sbjct: 631 --------------------NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670

Query: 898 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATF 957
           +IP    +LR +  LDLS NKL G+IP+ +  L  L    ++ NNLSG IPE   QF TF
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETF 729

Query: 958 NKSSYDGNPFLCGLPLPIC 976
             + +  NP LCG PLP C
Sbjct: 730 PPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  282 bits (723), Expect = 7e-82
 Identities = 165/679 (24%), Positives = 256/679 (37%), Gaps = 163/679 (24%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
              LE LD+S NN +      G+  L   S L+ LD+ GN  +     +++  + L  L+
Sbjct: 199 CVNLEFLDVSSNNFST-----GIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-LRKLKSLDLSGVGIRDG 200
           +S N   G I       L +L+ L + +N+    E+     G    L  LDLS      G
Sbjct: 254 ISSNQFVGPIPP---LPLKSLQYLSLAENKF-TGEIPDFLSGACDTLTGLDLS------G 303

Query: 201 NKLL----QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 256
           N          GS   L +L L SNNF+  L     L     L+ L L  +         
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGEL-PMDTLLKMRGLKVLDLSFNEFS------ 356

Query: 257 IGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 316
            G +  SL NLS                   SL  LD+         S     G  +P+L
Sbjct: 357 -GELPESLTNLSA------------------SLLTLDL---------SSNNFSGPILPNL 388

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
                +                     LQELY+ NN   G +P  L+N + L  L +SFN
Sbjct: 389 CQNPKN--------------------TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINE 434
            L+G+I SS L  L+ + +L+L  N     IP     L     L+      N++ GEI  
Sbjct: 429 YLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEI-- 482

Query: 435 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 494
              L+    L  +SLS+N                         ++ GE P W +     L
Sbjct: 483 PSGLSNCTNLNWISLSNN-------------------------RLTGEIPKW-IGRLENL 516

Query: 495 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 554
             L L                        SNN+F G+IP E+GD   SL++ +++ N  +
Sbjct: 517 AILKL------------------------SNNSFSGNIPAELGD-CRSLIWLDLNTNLFN 551

Query: 555 GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSLSNNSLKGHIFSRIFSL 613
           G+IP++       Q   ++ N + G+   ++    +  E   + +    +G    ++  L
Sbjct: 552 GTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
                  +    + G    +     S+  L ++ N LSG IP+ +G++  L  + +  N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 733
           + G IP E   L  L ILD+S N + G +P                              
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ------------------------AMSAL 703

Query: 734 SSLVTLDLSYNYLNGSIPD 752
           + L  +DLS N L+G IP+
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  217 bits (556), Expect = 1e-59
 Identities = 139/584 (23%), Positives = 208/584 (35%), Gaps = 136/584 (23%)

Query: 81  PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 140
           P + L+ L L+ N   G               L  LDL GN    ++       S L SL
Sbjct: 267 PLKSLQYLSLAENKFTG---EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

Query: 141 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 200
            LS N   G +       +  L+ LD++ NE               L +LDLS       
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS------S 377

Query: 201 NKL----LQSMG--SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 254
           N      L ++      +L  L+L++N FT  +     L N + L  L L  + L     
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLS---- 431

Query: 255 QSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMP 314
              G+I  SL +LS                    L  L +       N            
Sbjct: 432 ---GTIPSSLGSLS-------------------KLRDLKLWL-----N------------ 452

Query: 315 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 374
                 L G          + Q L  +  L+ L +D NDL G +P  L+N T+L  + +S
Sbjct: 453 -----MLEGE---------IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 375 FNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEI 432
            N+LTG I    +  L ++  L+LSNN F   IP  L        L   D   N  NG I
Sbjct: 499 NNRLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDC---RSLIWLDLNTNLFNGTI 554

Query: 433 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 492
             +        +   S                        +++   + G+   + ++N+ 
Sbjct: 555 PAA--------MFKQSG-----------------------KIAANFIAGKRYVY-IKNDG 582

Query: 493 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 552
             +  +                         +   FQG    ++   L +    NI+   
Sbjct: 583 MKKECHGAG----------------------NLLEFQGIRSEQLN-RLSTRNPCNITSRV 619

Query: 553 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 612
             G    +F N   + FLD+S N L+G IP  +      L  L+L +N + G I   +  
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGD 678

Query: 613 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656
           LR L  L L  N   G IPQ++S  + L  + L+NNNLSG IP 
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 881 NLTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 937
              ++ +++LS   L      +  +  +L  +ESL LS + ++G +        +L    
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106

Query: 938 VAYNNLSGKIPEW 950
           ++ N+LSG +   
Sbjct: 107 LSRNSLSGPVTTL 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  292 bits (750), Expect = 2e-86
 Identities = 121/706 (17%), Positives = 225/706 (31%), Gaps = 94/706 (13%)

Query: 286 FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
             ++  L++   ++      +F          L  L +  +T+    S++  +    L  
Sbjct: 24  PTNITVLNLTHNQLRRLPAANF-----TRYSQLTSLDVGFNTI----SKLEPELCQKLPM 74

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
           L+ L + +N+L        A  T+L  L +  N +   I ++P V   ++  L LS+N  
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGL 133

Query: 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 463
                L        L+     NN+I    +E   +     LK L LSSN       P   
Sbjct: 134 SS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCF 191

Query: 464 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 523
           +    L    L+++++       L                          ++  +R L +
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLE----------------------LANTSIRNLSL 229

Query: 524 SNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 582
           SN+            +   +L   ++S N L+     SF  +  L++  L  N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 583 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 642
             L     N+ +L+L  +                    +           S      L+ 
Sbjct: 290 HSLH-GLFNVRYLNLKRS---------------FTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 643 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE----FCRLDSLQILDISDNNI 698
           L + +N++ G        L  L+++ +  +                   L IL+++ N I
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 699 SGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 757
           S      F  L  ++ + L  N +  +L    +    ++  + LSYN       +    +
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

Query: 758 SQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 811
             L  L L    L+     P     L  L +LDLS+NN+  +     +       L   +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
           NN                         L             Y  + LS L  L+L  N  
Sbjct: 514 NN-------------------------LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD-L 930
                    +L  ++ ++L  NNL       F+N   ++SL+L  N ++    +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608

Query: 931 NTLAIFIVAYNNLSGKIP--EWTAQFA--TFNKSSYDGNPFLCGLP 972
             L    + +N          W   +   T        + +LC  P
Sbjct: 609 RNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  263 bits (673), Expect = 8e-76
 Identities = 129/731 (17%), Positives = 227/731 (31%), Gaps = 122/731 (16%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSR--LSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
             E  D S            L ++     + +  L+L  N       ++  R S LTSL 
Sbjct: 5   SHEVADCSHLK---------LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLD 55

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           +  N +   ++ +    L  L+ L++  NE+  +   + +     L  L L    I+   
Sbjct: 56  VGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIK 113

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
                     +L TL L  N  ++  T         NL+ L L ++ +     + +    
Sbjct: 114 N--NPFVKQKNLITLDLSHNGLSS--TKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169

Query: 262 -PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 320
             SLK L +S  ++     G  F     L  L +   ++  + +    +  +  S++ LS
Sbjct: 170 NSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 321 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 380
           LS S L T S+           +L  L +  N+L        A    L    + +N +  
Sbjct: 229 LSNSQLSTTSNTTF--LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 381 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 440
             S S L  L ++  L L  +  +  +S                   +    + S     
Sbjct: 287 LFSHS-LHGLFNVRYLNLKRSFTKQSIS----------------LASLPKIDDFSFQWLK 329

Query: 441 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 500
              L+ L++  N                           I    + +      L++L L 
Sbjct: 330 C--LEHLNMEDN--------------------------DIPGIKSNMFTGLINLKYLSL- 360

Query: 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 560
                        S+       ++N  F              L   N++ N +      +
Sbjct: 361 -------------SNSFTSLRTLTNETFVSL-------AHSPLHILNLTKNKISKIESDA 400

Query: 561 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620
           F  +  L+ LDL  N++  E+         N+  + LS N       +    + +L+ L+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 621 LEGNHF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--- 675
           L       V   P       +L  L L+NNN++      L  L+ L+ + +  N+L    
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLW 520

Query: 676 -----GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 730
                G        L  L IL++  N                            +    F
Sbjct: 521 KHANPGGPIYFLKGLSHLHILNLESNGFDE------------------------IPVEVF 556

Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDL 789
            +   L  +DL  N LN       +    L  LNL  N +              L  LD+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616

Query: 790 SDNNLHGLIPS 800
             N       S
Sbjct: 617 RFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  257 bits (659), Expect = 5e-74
 Identities = 125/691 (18%), Positives = 221/691 (31%), Gaps = 111/691 (16%)

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 195
           S      SH  L    D    D  +N+  L++  N++  +  +  +    +L SLD+   
Sbjct: 5   SHEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVG-- 57

Query: 196 GIRDGNKLLQ----SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 251
                N + +         P L  L+L+ N  +     T      TNL  L L  +S+  
Sbjct: 58  ----FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKT--FAFCTNLTELHLMSNSIQ- 110

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
                                                                       
Sbjct: 111 ------KIKNNPFVKQ-------------------------------------------- 120

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLR 369
              +L  L LS + L    S         L +LQEL + NN ++      L     +SL+
Sbjct: 121 --KNLITLDLSHNGL----SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 370 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNE 427
            L++S NQ+           +  +  L L+N      +   L     ++ ++     N++
Sbjct: 175 KLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 428 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 487
           ++   N +        L  L LS N  + V          +L+   L +  +   F +  
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS- 291

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
           L     + +L L                +      +S  +            L  L + N
Sbjct: 292 LHGLFNVRYLNL---------------KRSFTKQSISLASLPKIDDFSFQW-LKCLEHLN 335

Query: 548 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLSNNSLKG 604
           +  N + G   + F  +I L++L LSN+  +     +     +    L  L+L+ N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 605 HIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 663
                   L +L  L L  N    E+  Q      ++  +YL+ N            +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 664 LQHIVMPKNHLEG--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNM 720
           LQ +++ +  L+     P  F  L +L ILD+S+NNI+         L  ++ + L  N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 721 LH-------GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 773
           L                   S L  L+L  N  +    +    L +L  ++L  NNL   
Sbjct: 516 LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTL 575

Query: 774 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
                     L+ L+L  N +  +    F  
Sbjct: 576 PASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 2e-63
 Identities = 120/643 (18%), Positives = 212/643 (32%), Gaps = 87/643 (13%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV 131
             L   L      L+ L+L  N ++  ++       +  + L +L L  N       +  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKT----FAFCTNLTELHLMSNSIQKIKNNPF 117

Query: 132 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV-EVSRGYRGLRKLKSL 190
            +  +L +L LSHN L  +        L NL+EL +++N+I  +            LK L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176

Query: 191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLT-TTQELHNFTNLEYLTLDDSSL 249
           +LS   I++ +       +   L  L L +     +LT         T++  L+L +S L
Sbjct: 177 ELSSNQIKEFSP--GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 250 -HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI 308
              S    +G  + +L  L +S   +N  +    F     LE+  + +  I         
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNI---QHLFSH 290

Query: 309 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 368
               + +++YL+L  S                     +  I    L     +       L
Sbjct: 291 SLHGLFNVRYLNLKRS-------------------FTKQSISLASLPKIDDFSFQWLKCL 331

Query: 369 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF---NHSKLKIFDAKN 425
             L++  N + G  S+     L +++ L LSN+   +       F    HS L I +   
Sbjct: 332 EHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 426 NEINGEINES-HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 484
           N+I+   +++   L     L+ L L  N                         ++  E  
Sbjct: 391 NKISKIESDAFSWLG---HLEVLDLGLN-------------------------EIGQELT 422

Query: 485 NWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDILPS 542
                    +  +YL  +      R        L+ L +     +     P      L +
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRN 481

Query: 543 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 602
           L   ++S N +          +  L+ LDL +N L                   L  ++ 
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA-----------------RLWKHAN 524

Query: 603 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662
            G     +  L +L  L LE N F     +       LK + L  NNL+        N  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 663 GLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPS 704
            L+ + + KN +       F     +L  LD+  N    +  S
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  204 bits (522), Expect = 1e-55
 Identities = 81/427 (18%), Positives = 150/427 (35%), Gaps = 51/427 (11%)

Query: 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 601
           S    + S   L   +P        +  L+L++N+L      +       L  L +  N+
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNT 60

Query: 602 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661
           +          L  L+ L L+ N       ++ + C++L  L+L +N++           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL---SIKQVHLSK 718
           K L  + +  N L         +L++LQ L +S+N I              S+K++ LS 
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 719 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI---DGLSQLSHLNLAHNNLEGEVP 775
           N +      G F     L  L L+   L  S+ + +      + + +L+L+++ L     
Sbjct: 181 NQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

Query: 776 --IQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 829
                 +   L +LDLS NNL+ +    F            YNN                
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------------- 283

Query: 830 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSL---LAGLDLSCNKLVGHIPPQIGNLTRIQ 886
                   I  +F  +   +   +  R L+L        +S   L          L  ++
Sbjct: 284 --------IQHLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 887 TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV----DLNTLAIFIVAYNN 942
            LN+  N++ G     F+ L +++ L LS +  S +            + L I  +  N 
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 943 LSGKIPE 949
           +S    +
Sbjct: 393 ISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  191 bits (487), Expect = 5e-51
 Identities = 111/561 (19%), Positives = 180/561 (32%), Gaps = 78/561 (13%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
                    + L+ L LS N I           +   S LKKL+L  N            
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQA--LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193

Query: 134 LSSLTSLHLSHNILQGSIDAKEF--DSLSNLEELDINDNEIDNV-EVSRGYRGLRKLKSL 190
           +  L  L L++  L  S+  K     + +++  L ++++++      +        L  L
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253

Query: 191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
           DLS   +        S    P L    LE NN     + +  LH   N+ YL L  S   
Sbjct: 254 DLSYNNLNVVGN--DSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTK 309

Query: 251 ISL-LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 309
            S+ L S+  I                      F   K LEHL+M    I         +
Sbjct: 310 QSISLASLPKIDDFS------------------FQWLKCLEHLNMEDNDI---PGIKSNM 348

Query: 310 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 369
              + +LKYLSLS S     +           + L  L +  N +        +    L 
Sbjct: 349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408

Query: 370 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNE 427
           +LD+  N++   ++      L +I E+ LS N +      S   +     L+    +   
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV---PSLQRLMLRRVA 465

Query: 428 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 487
           +    +      P   L  L LS+N                           I    + +
Sbjct: 466 LKNVDSSPSPFQPLRNLTILDLSNNN--------------------------IANINDDM 499

Query: 488 LENNTKLEFLYL--------VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
           LE   KLE L L           +  G     +     L  L++ +N F         D 
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD- 558

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L  L   ++ +N L+    S F N + L+ L+L  N +T            NL  L +  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 600 NSLKGHIFSRIFSLRNLRWLL 620
           N           +  ++ W +
Sbjct: 619 NPFDC-------TCESIAWFV 632

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 2e-15
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 56/192 (29%)

Query: 759 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 818
                + +H  L  +VP  L     + +L+L+ N L  L  + F                
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTR-------------- 47

Query: 819 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 878
                                                   S L  LD+  N +    P  
Sbjct: 48  ---------------------------------------YSQLTSLDVGFNTISKLEPEL 68

Query: 879 IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 938
              L  ++ LNL HN L+     TF+   ++  L L  N +        V    L    +
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 939 AYNNLSGKIPEW 950
           ++N LS      
Sbjct: 129 SHNGLSSTKLGT 140

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 62  YLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN 121
            L+  +                 L  L+L  N                L +LK +DL  N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKIIDLGLN 570

Query: 122 LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
             N    S      SL SL+L  N++          +  NL ELD+  N  D
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  256 bits (657), Expect = 5e-74
 Identities = 80/611 (13%), Positives = 180/611 (29%), Gaps = 91/611 (14%)

Query: 362 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP---LFNHSKL 418
           L +   +  L +     +G +  + +  LT +E L L ++  ++   L     +  +   
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 419 KIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 478
           +              +         L    ++S+     +  K      +  +       
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ-QKSIKKSSRITLKDTQIGQLSNN 194

Query: 479 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 538
            I      ++   TKL   Y+ N             ++                 ++  +
Sbjct: 195 -ITFVSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLKWDN 247

Query: 539 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM-------CCVN 591
            L  L    +        +P+    +  +Q ++++ N+                      
Sbjct: 248 -LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 592 LEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 650
           ++ + +  N+LK   + + +  ++ L  L    N   G++P +      L  L L  N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 651 SGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 709
           +     + G  + ++++    N L+  P   +   +  +  +D S N I       F PL
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 710 --------SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-------SIPDWI 754
                   ++  ++LS N +    KE  F   S L +++L  N L            +  
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 755 DGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 813
                L+ ++L  N L       +   L  L  +DLS N+         +++TL      
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL------ 538

Query: 814 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 873
                                                     +   +    D   N+ + 
Sbjct: 539 ------------------------------------------KGFGIRNQRDAQGNRTLR 556

Query: 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
             P  I     +  L +  N++         N+     LD+  N         +      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDNPNISIDLSYVCPYIEA 613

Query: 934 AIFIVAYNNLS 944
            ++++ Y+   
Sbjct: 614 GMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  228 bits (582), Expect = 7e-64
 Identities = 76/542 (14%), Positives = 171/542 (31%), Gaps = 75/542 (13%)

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL---LENNTKLEFLYL 499
           ++  LSL    G S   P  +    EL+   L           +    +  N   E    
Sbjct: 82  RVTGLSLEGF-GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 500 VNDSLAGPF--RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 557
           +       F    P      L    ++++  Q  I      I           N +   +
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR-ITLKDTQIGQLSNNI-TFV 198

Query: 558 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 617
             +   +  L+   + N+    E        C   E  +            +  +L++L 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 618 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL--------SGKIPRWLGNLKGLQHIVM 669
            + +     + ++P  L     ++ + +  N            +        + +Q I +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 670 PKNHL-EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 728
             N+L   P+     ++  L +L+   N + G LP+    + +  ++L+ N +   +   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPAN 371

Query: 729 TFFNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHNNLEG-------EVPIQLC 779
                  +  L  ++N L   IP+      +S +S ++ ++N +          +     
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 780 RLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVE 835
           +   +  ++LS+N +       F      ++++   N              ++    +  
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-------------LTEIPKNSL 477

Query: 836 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHN 893
           K   E F             +   LL  +DL  NKL   +        L  +  ++LS+N
Sbjct: 478 KDENENF-------------KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN 523

Query: 894 NLTGTIPLTFSNLRHIESL------DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 947
           + +   P    N   ++        D   N+   + P  +    +L    +  N++   +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-V 581

Query: 948 PE 949
            E
Sbjct: 582 NE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 2e-61
 Identities = 82/545 (15%), Positives = 180/545 (33%), Gaps = 62/545 (11%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA--NTTSLR 369
            +  L+ L+L       N      +G+      ++        + +        + + L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 370 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEI 428
              ++ +    SI  S         ++   +N+   +  ++      +KL+ F   N+  
Sbjct: 163 KDCINSDPQQKSIKKS-SRITLKDTQIGQLSNNITFVSKAV---MRLTKLRQFYMGNSPF 218

Query: 429 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 488
             E          ++ ++   +  Y    T      +  +L + E+ +   + + P +L 
Sbjct: 219 VAENICE-----AWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269

Query: 489 ENNTKLEFLYLVNDSLAGPFRLP--------IHSHKRLRFLDVSNNNFQ-GHIPVEIGDI 539
           +   +++ + +  +      +L             ++++ + +  NN +   +   +   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK- 328

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           +  L       N L+G +P+ FG+ I L  L+L+ N++T  IP +       +E LS ++
Sbjct: 329 MKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAH 386

Query: 600 NSLKG-HIFSRIFSLRNLRWLLLEGNHFVG-------EIPQSLSKCSSLKGLYLNNNNLS 651
           N LK         S+  +  +    N            +  +  K  ++  + L+NN +S
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 652 GKIPRWLGNLKGLQHIVMPKNHLEG-------PIPVEFCRLDSLQILDISDNNISGSLPS 704
                       L  I +  N L              F     L  +D+  N ++  L  
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505

Query: 705 CFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTL------DLSYNYLNGSIPDWID 755
            F       +  + LS N       +    N S+L         D   N      P+ I 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563

Query: 756 GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT----LHESY 811
               L+ L +  N++   V  ++     + +LD+ DN    +  S              Y
Sbjct: 564 LCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

Query: 812 NNNSS 816
           +    
Sbjct: 621 DKTQD 625

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 2e-61
 Identities = 61/470 (12%), Positives = 151/470 (32%), Gaps = 72/470 (15%)

Query: 512 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFL 567
           ++S+ R+  L +      G +P  IG  L  L    +  +          P      +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 568 QFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
           +              D+       +L    ++++  +  I            +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
              + +++ + + L+  Y+ N+    +        +  ++             +++  L 
Sbjct: 196 -TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 687 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKE-------GTFFNCSSLVT 738
            L  +++ +      LP+    L  ++ ++++ N      +                +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 739 LDLSYNYL-NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
           + + YN L    +   +  + +L  L   +N LEG++P       +L  L+L+ N +  +
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI 368

Query: 798 IPSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
             +    T     L  ++N                         I  IF+  +       
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKY---------------------IPNIFDAKS------- 400

Query: 854 QGRVLSLLAGLDLSCNKLVG-------HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 906
               +S+++ +D S N++          + P       + ++NLS+N ++      FS  
Sbjct: 401 ----VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456

Query: 907 RHIESLDLSYNKLSG-------KIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
             + S++L  N L+               +   L    + +N L+    +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  216 bits (552), Expect = 6e-60
 Identities = 87/668 (13%), Positives = 178/668 (26%), Gaps = 145/668 (21%)

Query: 130 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 189
           S+     +T L L      G +       L+ LE L +  +                   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRV-PDAIGQLTELEVLALGSHGEK---------------- 118

Query: 190 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 249
                  + +     + + +  S         ++  T        +F++L    ++    
Sbjct: 119 -------VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQ 171

Query: 250 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 309
             S+ +S   I      +      +  V           L    M       N+ F+   
Sbjct: 172 QKSIKKSSR-ITLKDTQIGQLSNNITFVSKA--VMRLTKLRQFYMG------NSPFVAEN 222

Query: 310 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 369
                  +    +         +  D     L  L ++ + N      LP  L     ++
Sbjct: 223 ICEAWENENSEYA------QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276

Query: 370 ILDVSFNQLTGSISS-------SPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLK 419
           +++V+ N+              +       I+ + +  N+ +   +  SL       KL 
Sbjct: 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL---QKMKKLG 333

Query: 420 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 479
           + +   N++ G++    S     +L SL+L+ N                           
Sbjct: 334 MLECLYNQLEGKLPAFGSEI---KLASLNLAYN--------------------------Q 364

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 538
           I E P        ++E L   ++ L   P      S   +  +D S N            
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD- 423

Query: 539 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 598
                             +  +    I +  ++LSNN+++    +  +     L  ++L 
Sbjct: 424 -----------------PLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLM 465

Query: 599 NNSLKG-------HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 649
            N L                +   L  + L  N     +      +    L G+ L+ N+
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 650 LSGKIPRWLGNLKGLQHIVMP------KNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 703
            S   P    N   L+   +        N      P       SL  L I  N+I   + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVN 582

Query: 704 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 763
                                          ++  LD+  N        ++    +    
Sbjct: 583 EKI--------------------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

Query: 764 NLAHNNLE 771
            L ++  +
Sbjct: 617 MLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  214 bits (548), Expect = 2e-59
 Identities = 89/617 (14%), Positives = 179/617 (29%), Gaps = 97/617 (15%)

Query: 206 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 265
           S+ S   +  L LE    +  +     +   T LE L L      ++          +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVP--DAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 266 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 325
           +                  +    +  D+    I  +     I   S  +LK   +    
Sbjct: 134 SDEQKQKMRMH-YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG--- 189

Query: 326 LGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSS 385
             +N+   + + +  L  L++ Y+ N+              +       + Q   +    
Sbjct: 190 QLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYKTEDLK 244

Query: 386 PLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 443
              +L  + ++ + N     ++P  L        L                        +
Sbjct: 245 -WDNLKDLTDVEVYNCPNLTKLPTFL------KALP-----------------------E 274

Query: 444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVN 501
           ++ ++++ N                         + + +    L       K++ +Y+  
Sbjct: 275 MQLINVACNR--------------------GISGEQLKDDWQALADAPVGEKIQIIYIGY 314

Query: 502 DSLA-GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 560
           ++L   P    +   K+L  L+   N  +G +P   G     L   N++ N +     + 
Sbjct: 315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS-EIKLASLNLAYNQITEIPANF 372

Query: 561 FGNVIFLQFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKG-------HIFSRIFS 612
            G    ++ L  ++NKL   IP+         +  +  S N +          +    F 
Sbjct: 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 613 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-------KIPRWLGNLKGLQ 665
             N+  + L  N       +  S  S L  + L  N L+               N   L 
Sbjct: 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

Query: 666 HIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-------IKQVHLS 717
            I +  N L           L  L  +D+S N+ S   P+     S         Q    
Sbjct: 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 777
            N    +  E     C SL  L +  N +   + + I     +S L++  N         
Sbjct: 551 GNRTLREWPE-GITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDLSY 606

Query: 778 LCRLNQLQLLDLSDNNL 794
           +C   +  +  L  +  
Sbjct: 607 VCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  197 bits (502), Expect = 2e-53
 Identities = 102/682 (14%), Positives = 194/682 (28%), Gaps = 144/682 (21%)

Query: 41  TDCCQW---EGVECSNTTGRVIGLYLSETY-SGEYWYLNASLFTPFQQLESLDLSWNNIA 96
            +   W    GV  ++  GRV GL L     SG    +  ++     +LE L L  +   
Sbjct: 64  KELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR---VPDAIGQ-LTELEVLALGSHGEK 118

Query: 97  GCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARL--SSLTSLHLSHNILQGSIDAK 154
                 G + +S     ++          + +    R   S L    ++ +  Q SI  K
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-KK 177

Query: 155 EFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN 214
                    ++    N I    VS+    L KL+   +        +  + +     +  
Sbjct: 178 SSRITLKDTQIGQLSNNIT--FVSKAVMRLTKLRQFYMG------NSPFV-AENICEAWE 228

Query: 215 TLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 274
             + E      T     +  N  +L  + + +          +  +   LK L       
Sbjct: 229 NENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPN-------LTKLPTFLKAL------- 272

Query: 275 NGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRIL 334
                         ++ +++   R                S + L      L        
Sbjct: 273 ------------PEMQLINVACNRGI--------------SGEQLKDDWQALAD------ 300

Query: 335 DQGLCPLAHLQELYIDNNDLR-GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
                    +Q +YI  N+L+   +   L     L +L+  +NQL G + +        +
Sbjct: 301 ---APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA--FGSEIKL 355

Query: 394 EELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
             L L+ N    IP +        +++     +N++   I           + ++  S N
Sbjct: 356 ASLNLAYNQITEIPANF--CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412

Query: 453 YGDSVTFPKFLYHQHELKEAELSHI--KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 510
                               E+  +  K               +  + L           
Sbjct: 413 --------------------EIGSVDGKNFDPLDPTPF-KGINVSSINL----------- 440

Query: 511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-------SIPSSFGN 563
                        SNN        E+      L   N+  N L             +F N
Sbjct: 441 -------------SNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 564 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL---- 619
              L  +DL  NKLT    D  A     L  + LS NS      ++  +   L+      
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 620 --LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 677
               +GN  + E P+ ++ C SL  L + +N++   +   +     +  + +  N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 678 IPVEFCRLDSLQILDISDNNIS 699
                C      +  +  +   
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  185 bits (471), Expect = 3e-49
 Identities = 56/421 (13%), Positives = 126/421 (29%), Gaps = 79/421 (18%)

Query: 546 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG- 604
           FN  ++        S  +   +  L L     +G +PD +      LE L+L ++  K  
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVN 120

Query: 605 ---HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNNLSGKIPRWLG 659
                   I +  +         H+         +   S L    +N++     I +   
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
                  I    N++   +     RL  L+   + ++          +       +    
Sbjct: 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE----NSEYA 235

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL--------E 771
             +    +  + N   L  +++        +P ++  L ++  +N+A N          +
Sbjct: 236 QQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 772 GEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 830
            +         ++Q++ +  NNL    + +                              
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-------------------------- 328

Query: 831 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 890
                                      +  L  L+   N+L G   P  G+  ++ +LNL
Sbjct: 329 ---------------------------MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNL 360

Query: 891 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAIFIVAYNNLSGKIP 948
           ++N +T            +E+L  ++NKL   IP       ++ ++    +YN +     
Sbjct: 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

Query: 949 E 949
           +
Sbjct: 420 K 420

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.1 bits (237), Expect = 4e-20
 Identities = 25/227 (11%), Positives = 64/227 (28%), Gaps = 13/227 (5%)

Query: 728 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 787
           G      +    +   +         ++   +++ L+L      G VP  + +L +L++L
Sbjct: 51  GFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVL 110

Query: 788 DLSDNNLHG----LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 843
            L  +          P         E           ++ +F    P+      I +   
Sbjct: 111 ALGSHGEKVNERLFGPKGISANMSDEQKQKMRM---HYQKTFVDYDPREDFSDLIKDCIN 167

Query: 844 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 903
              +  +     R+      +    N +   +   +  LT+++   + ++          
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEA 226

Query: 904 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 950
                    +  Y +       +  +L  L    V       K+P +
Sbjct: 227 WEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  247 bits (632), Expect = 5e-71
 Identities = 115/726 (15%), Positives = 212/726 (29%), Gaps = 156/726 (21%)

Query: 238 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 297
            +  +T     L  +  +   ++  S KNL +S   +  + S   F  F  L+ LD+   
Sbjct: 6   VVPNITYQCMEL--NFYKIPDNLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLS-- 60

Query: 298 RIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
                     I   +   +  L  L L+G+ +      +       L+ LQ+L     +L
Sbjct: 61  ----RCEIQTIEDGAYQSLSHLSTLILTGNPI----QSLALGAFSGLSSLQKLVAVETNL 112

Query: 355 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPL 412
                + + +  +L+ L+V+ N +          +LT++E L LS+N  +      L  L
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 413 FN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 471
                     D   N +N     +       +L  L+L +N                   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKE---IRLHKLTLRNN------------------- 210

Query: 472 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH---KRLRFLDVSNNNF 528
                           ++    LE   LV         L        + L  L +     
Sbjct: 211 ------FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 529 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 588
                                ++     I   F  +  +    L +  +           
Sbjct: 265 A-------------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--- 302

Query: 589 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 648
               + L L N         ++ SL+ L +   +G         S     SL+ L L+ N
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRN 357

Query: 649 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 708
            LS                       +G          SL+ LD+S N +     +    
Sbjct: 358 GLS----------------------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 709 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 768
             ++ +    + L    +   F +  +L+ LD+S+ +   +     +GLS L  L +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 769 NLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSI 827
           + +    P     L  L  LDLS   L  L P+ F++                       
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS----------------------- 492

Query: 828 SGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 887
                                         LS L  L++S N            L  +Q 
Sbjct: 493 ------------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 888 LNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIP-RQLVD-LNTLAIFIVAYNNLS 944
           L+ S N++  +      +    +  L+L+ N  +     +  +  +      +V    + 
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

Query: 945 GKIPEW 950
              P  
Sbjct: 583 CATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (560), Expect = 3e-61
 Identities = 111/606 (18%), Positives = 195/606 (32%), Gaps = 84/606 (13%)

Query: 111 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
              K LDL  N   +    S      L  L LS   +Q   D   + SLS+L  L +  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGN 86

Query: 171 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT 230
            I ++     + GL  L+ L      +   +     +G   +L  L++  N    +    
Sbjct: 87  PIQSLA-LGAFSGLSSLQKLVAVETNLA--SLENFPIGHLKTLKELNVAHNLIQ-SFKLP 142

Query: 231 QELHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 287
           +   N TNLE+L L      S++ + L+ +  +     +L +S   +N +  G       
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEI 200

Query: 288 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 347
            L  L +R      + + ++   + +  L+   L       N   +       L  L  L
Sbjct: 201 RLHKLTLRNNF--DSLNVMKTCIQGLAGLEVHRLVLGEF-RNEGNLEKFDKSALEGLCNL 257

Query: 348 YIDNNDLR------GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
            I+   L         +       T++    +    +          +    + L L N 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNC 314

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
            F        L +  +L     K      E++          L+ L LS N         
Sbjct: 315 KFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-------LEFLDLSRN--------- 357

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 521
                          +   G                                    L++L
Sbjct: 358 --------------GLSFKGCCSQSDFGT-------------------------TSLKYL 378

Query: 522 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGE 580
           D+S N         +G  L  L + +   + L      S F ++  L +LD+S+      
Sbjct: 379 DLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSS 639
                     +LE L ++ NS + +    IF+ LRNL +L L         P + +  SS
Sbjct: 437 FNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL-DSLQILDISDNNI 698
           L+ L +++NN           L  LQ +    NH+      E      SL  L+++ N+ 
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

Query: 699 SGSLPS 704
           + +   
Sbjct: 556 ACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  211 bits (539), Expect = 2e-58
 Identities = 104/649 (16%), Positives = 199/649 (30%), Gaps = 96/649 (14%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           L +  F  F +L+ LDLS   I    +         LS L  L L GN   +  L + + 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGA----YQSLSHLSTLILTGNPIQSLALGAFSG 98

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
           LSSL  L      L    +      L  L+EL++  N I + ++   +  L  L+ LDLS
Sbjct: 99  LSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 194 GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHI 251
                                      N   +      +L     +    L+LD S   +
Sbjct: 158 S--------------------------NKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
           + +Q        L  L++     +  +          LE   +         +  +    
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
           ++  L  L++    L                         +     +       T++   
Sbjct: 250 ALEGLCNLTIEEFRLAY----------------------LDYYLDDIIDLFNCLTNVSSF 287

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 431
            +    +          +    + L L N  F        L +  +L     K      E
Sbjct: 288 SLVSVTIER---VKDFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 432 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 491
           ++          L+ L LS N                        +   G          
Sbjct: 344 VDLPS-------LEFLDLSRN-----------------------GLSFKGCCSQSDF-GT 372

Query: 492 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 551
           T L++L L  + +       +   + L  LD  ++N +      +   L +L+Y +IS  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 552 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 611
               +    F  +  L+ L ++ N         +     NL FL LS   L+    +   
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 612 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMP 670
           SL +L+ L +  N+F           +SL+ L  + N++     + L +    L  + + 
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 671 KNHLEGPIPVEFCR--LDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
           +N        +     +   + L +    +  + PS    + +  ++++
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  194 bits (496), Expect = 8e-53
 Identities = 75/446 (16%), Positives = 142/446 (31%), Gaps = 58/446 (13%)

Query: 522 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 581
                NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++    
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68

Query: 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 641
                    +L  L L+ N ++         L +L+ L+    +        +    +LK
Sbjct: 69  DGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 642 GLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISDN 696
            L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 697 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS------I 750
            ++   P  F  + + ++ L  N     + +      + L    L               
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 751 PDWIDGLSQLSHLNLAHNNLE---GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
              ++GL  L+        L+    ++      L  +    L    +  +    ++    
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
           H    N      P                                     L L +   L+
Sbjct: 308 HLELVNCKFGQFPT------------------------------------LKLKSLKRLT 331

Query: 868 CNKLVGHIPPQIGNLTRIQTLNLSHNNLT--GTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
                G       +L  ++ L+LS N L+  G    +      ++ LDLS+N +   +  
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS 390

Query: 926 QLVDLNTLAIFIVAYNNLSGKIPEWT 951
             + L  L      ++NL        
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSV 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (606), Expect = 3e-67
 Identities = 105/533 (19%), Positives = 189/533 (35%), Gaps = 29/533 (5%)

Query: 286 FKSLEHLDMRFARIA--LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
             S E L+  F  +    NT+F       + +L +L L+   +      I +        
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTF-----SRLINLTFLDLTRCQI----YWIHEDTFQSQHR 82

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
           L  L +  N L       L+   +L+ L      ++ SI   PL +  ++E L L +NH 
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHI 141

Query: 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 463
              + L   F   KLK+ D +NN I+    E  S   +    SL+L+ N  D        
Sbjct: 142 SS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN--DIAGIEPGA 198

Query: 464 YHQHELKEAELSHIKMIGEFPNWLLENN-TKLEFLYLVNDSLAGPFRLPIHSHKR--LRF 520
           +     +       + +      L  +    L      +                  +  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           +++  + F   I          L   +++   L   +PS    +  L+ L LS NK    
Sbjct: 259 INLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFEN- 315

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH--FVGEIPQSLSKC 637
           +    A    +L  LS+  N+ +  + +     L NLR L L  +           L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDN 696
           S L+ L L+ N               L+ + +    L+       F  L  L++L++S +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 697 NISGSLPSCFYPL-SIKQVHLSKNMLHG--QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
            +  S    F  L +++ ++L  N        K  +      L  L LS+  L+      
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
              L  ++H++L+HN L       L  L  + L +L+ N++  ++PS     +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (582), Expect = 3e-64
 Identities = 119/643 (18%), Positives = 212/643 (32%), Gaps = 114/643 (17%)

Query: 345 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           +    +N  L   +P  L    S   L+ SFN L  +I ++    L ++  L L+     
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIY 70

Query: 405 IPVSLEP--LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 462
               +      +  +L       N +      + S      LK L               
Sbjct: 71  ---WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA--LKHLFFIQTG--------- 116

Query: 463 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 522
                            I       L N   LE LYL ++ ++          ++L+ LD
Sbjct: 117 -----------------ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 523 VSNNNFQGHIPVEIGDILPSL--VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
             NN    ++  E    L     +  N++ N +   I     +    Q L+    +    
Sbjct: 160 FQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 581 IPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIF---SLRNLRWLLLEGNHFVGEIPQSLSK 636
           I   L    + +L   +  +   +  I   +F      ++  + L+ ++F      +   
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC 276

Query: 637 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 696
            S L+ L L   +LS ++P  L  L  L+ +V+  N  E    +      SL  L I  N
Sbjct: 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 697 NISGSLPS-CFYPL-SIKQVHLSKNMLHG-QLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
                L + C   L +++++ LS + +           N S L +L+LSYN       + 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395

Query: 754 IDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 812
                QL  L+LA   L+  +       L+ L++L+LS + L       FD         
Sbjct: 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG-------- 447

Query: 813 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 872
                                                        L  L  L+L  N   
Sbjct: 448 ---------------------------------------------LPALQHLNLQGNHFP 462

Query: 873 GHI---PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 929
                    +  L R++ L LS  +L+      F++L+ +  +DLS+N+L+      L  
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 930 LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 969
           L  + + + A N++S  +P         ++        NP  C
Sbjct: 523 LKGIYLNL-ASNHISIILPSL---LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  220 bits (562), Expect = 2e-61
 Identities = 111/577 (19%), Positives = 199/577 (34%), Gaps = 59/577 (10%)

Query: 343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
             + L    N L        +   +L  LD++  Q+   I          ++ L L+ N 
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANP 92

Query: 403 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 462
               ++   L     LK        I+        L  +  L+SL L SN+  S+  PK 
Sbjct: 93  LIF-MAETALSGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 463 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL-VNDSLAGPFRLPIHSHKRLRFL 521
              +  LK  +  +   I       + +  +   L L +N +               + L
Sbjct: 150 FPTEK-LKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 522 DVSNNNFQGHIPVEI-GDILPSLVYFNISMNALDGSIPSSFGNV--IFLQFLDLSNNKLT 578
           +         I   +    + SL          +   P+ F  +  + ++ ++L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 579 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 638
               +    C   L+ L L+   L   + S +  L  L+ L+L  N F      S S   
Sbjct: 268 NISSNTFH-CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325

Query: 639 SLKGLYLNNNNLSGKI-PRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISD 695
           SL  L +  N    ++    L NL+ L+ + +  + +E      ++   L  LQ L++S 
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385

Query: 696 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
           N         F     ++ + L+   L  +  +  F N   L  L+LS++ L+ S     
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445

Query: 755 DGLSQLSHLNLAHNNLEGEVPIQ---LCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 807
           DGL  L HLNL  N+       +   L  L +L++L LS  +L  +    F +      +
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 808 HESYNN-NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 866
             S+N   SS  +       I                                    L+L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-----------------------------------LNL 530

Query: 867 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 903
           + N +   +P  +  L++ +T+NL  N L  T    +
Sbjct: 531 ASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 2e-58
 Identities = 116/621 (18%), Positives = 205/621 (33%), Gaps = 57/621 (9%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSH 144
            E L+ S+N +            SRL  L  LDL           +      L +L L+ 
Sbjct: 35  TECLEFSFNVLPTIQNTT----FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 145 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL 204
           N L   +          L+ L      I +++        + L+SL L    I      L
Sbjct: 91  NPLI-FMAETALSGPKALKHLFFIQTGISSID-FIPLHNQKTLESLYLGSNHISSIK--L 146

Query: 205 QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSL 264
                   L  L  ++N       + +++ +      L+L+ +   I+ ++         
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 265 KNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 323
           ++L+  G +   V   G      +SL            + S     G    S++ ++L  
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-EDISPAVFEGLCEMSVESINLQK 263

Query: 324 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 383
                 SS          + LQEL +    L   LP  L   ++L+ L +S N+    + 
Sbjct: 264 HYFFNISSNTFH----CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LC 317

Query: 384 SSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQ 443
                +  S+  L +  N  R+ +    L N   L+  D  +++I      +  L     
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 503
           L+SL+LS N                                    +   +LE L L    
Sbjct: 378 LQSLNLSYNE--------------------------PLSLKTEAFKECPQLELLDLAFTR 411

Query: 504 LAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI---PS 559
           L     + P  +   L+ L++S++        ++ D LP+L + N+  N          +
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 560 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 619
           S   +  L+ L LS   L+  I  H       +  + LS+N L       +  L+ +  L
Sbjct: 471 SLQTLGRLEILVLSFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-L 528

Query: 620 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHIVMPKNHLEGPI 678
            L  NH    +P  L   S  + + L  N L       +      L+        LE   
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYF-----LEWYKENMQKLEDTE 583

Query: 679 PVEFCRLDSLQILDISDNNIS 699
                    L+ + +SD  +S
Sbjct: 584 DTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 1e-56
 Identities = 128/684 (18%), Positives = 214/684 (31%), Gaps = 111/684 (16%)

Query: 123 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C N  L+ +     +S   L  S N+L  +I    F  L NL  LD+   +I  +     
Sbjct: 19  CENLGLNEIPGTLPNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIH-EDT 76

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFPSLNTLHLESNNFTATLTTTQELHNF 236
           ++   +L +L L+       N L+     ++    +L  L       ++       LHN 
Sbjct: 77  FQSQHRLDTLVLT------ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP--LHNQ 128

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
             LE L L  + +    L         LK L      ++  LS +     +   +L +  
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNL 186

Query: 297 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 356
               +  + ++         + L+  G+                +  L     ++ D   
Sbjct: 187 NGNDI--AGIEPGAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 357 SLPWCLAN--TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLF 413
             P         S+  +++  +    +ISS+     + ++EL L+  H   +P     L 
Sbjct: 243 ISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLSELPSG---LV 298

Query: 414 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 473
             S LK      N+       S S  P   L  LS+  N                     
Sbjct: 299 GLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGN--------------------- 335

Query: 474 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIP 533
                   E     LEN   L  L L              SH  +   D  N   +    
Sbjct: 336 ----TKRLELGTGCLENLENLRELDL--------------SHDDIETSDCCNLQLRN--- 374

Query: 534 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593
                 L  L   N+S N        +F     L+ LDL+  +L  +           L+
Sbjct: 375 ------LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428

Query: 594 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ---SLSKCSSLKGLYLNNNNL 650
            L+LS++ L          L  L+ L L+GNHF     Q   SL     L+ L L+  +L
Sbjct: 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 651 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 710
           S        +LK                         +  +D+S N ++ S       L 
Sbjct: 489 SSIDQHAFTSLK------------------------MMNHVDLSHNRLTSSSIEALSHLK 524

Query: 711 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 770
              ++L+ N +   +        S   T++L  N L+ +       +  L         L
Sbjct: 525 GIYLNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCT----CSNIYFLEWYKENMQKL 579

Query: 771 EGEVPIQLCRLNQLQLLDLSDNNL 794
           E            L+ + LSD  L
Sbjct: 580 EDTEDTLCENPPLLRGVRLSDVTL 603

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (525), Expect = 2e-56
 Identities = 90/512 (17%), Positives = 163/512 (31%), Gaps = 51/512 (9%)

Query: 456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 515
           + +  +    +   K     ++  + E P  L  +    E L    + L           
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLG-LNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRL 56

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
             L FLD++                  L    ++ N L     ++      L+ L     
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 576 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 635
            ++      L      LE L L +N +      + F    L+ L  + N       + +S
Sbjct: 116 GISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 636 KCSSLKGLYLN-NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP--VEFCRLDSLQILD 692
                  L LN N N    I     +    Q +          I   ++   + SL +  
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 693 ISDNNISGSLPSCF---YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
             D +     P+ F     +S++ ++L K+     +   TF   S L  LDL+  +L+  
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-E 292

Query: 750 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDN---- 804
           +P  + GLS L  L L+ N  E    I       L  L +  N     + + C +N    
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
             L  S+++  + D       +                               LS L  L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRN-------------------------------LSHLQSL 381

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT-FSNLRHIESLDLSYNKLSGKI 923
           +LS N+ +           +++ L+L+   L      + F NL  ++ L+LS++ L    
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 955
            +    L  L    +  N+      + T    
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  176 bits (449), Expect = 1e-46
 Identities = 99/582 (17%), Positives = 196/582 (33%), Gaps = 77/582 (13%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           +  +  +  + L+ L      I+          L     L+ L L  N  ++  L     
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLE--ELDINDNEIDNVEVSRGYRGLRKLKSLD 191
              L  L   +N +   +  ++  SL       L++N N+I  +E           +SL+
Sbjct: 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLN 208

Query: 192 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 251
             G              +  SL     E  +         E     ++E + L       
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF- 267

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
           ++  +    F  L+ L ++   ++ + S  G     +L+ L +   +     +  QI   
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKF---ENLCQISAS 322

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS--LPWCLANTTSLR 369
           + PSL +LS+ G+T       +    L  L +L+EL + ++D+  S      L N + L+
Sbjct: 323 NFPSLTHLSIKGNTKRLE---LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 370 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 429
            L++S+N+   S+ +        +E L L+    ++  +  P  N   LK+ +  ++ ++
Sbjct: 380 SLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 430 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 489
               +     P   L+ L+L  N                       H           L+
Sbjct: 439 ISSEQLFDGLPA--LQHLNLQGN-----------------------HFPKGNIQKTNSLQ 473

Query: 490 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 549
              +LE L L                        S  +    I       L  + + ++S
Sbjct: 474 TLGRLEILVL------------------------SFCDLS-SIDQHAFTSLKMMNHVDLS 508

Query: 550 MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR 609
            N L  S   +  ++  +  L+L++N ++  +P  L +       ++L  N L     + 
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPI-LSQQRTINLRQNPLDCTCSNI 566

Query: 610 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 651
            F    L W                     L+G+ L++  LS
Sbjct: 567 YF----LEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  130 bits (328), Expect = 2e-31
 Identities = 81/440 (18%), Positives = 154/440 (35%), Gaps = 39/440 (8%)

Query: 73  YLNASLFTPFQQLE--SLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSS 130
           YL+    +  QQ    SL+L+ N+IAG             +  + L+  G      I   
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-----AFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 131 VA--RLSSLTSLHLSHNILQGSIDAKEFDSLS--NLEELDINDNEIDNVEVSRGYRGLRK 186
           +    + SL          +  I    F+ L   ++E +++  +   N+  S  +     
Sbjct: 222 LKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSG 279

Query: 187 LKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 246
           L+ LDL+   +   ++L   +    +L  L L +N F      +    NF +L +L++  
Sbjct: 280 LQELDLTATHL---SELPSGLVGLSTLKKLVLSANKFENLCQIS--ASNFPSLTHLSIKG 334

Query: 247 SSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDMRFARIALNTSF 305
           ++  + L         +L+ L +S  ++           +   L+ L++ +       S 
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP---LSL 391

Query: 306 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 365
                +  P L+ L L+ + L    ++        L  L+ L + ++ L  S        
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 366 TSLRILDVSFNQLTGSISSSP--LVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 423
            +L+ L++  N            L  L  +E L LS       +      +   +   D 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDL 507

Query: 424 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH------I 477
            +N +     E+ S         L+L+SN+   +  P  L    + +   L         
Sbjct: 508 SHNRLTSSSIEALSHLKGIY---LNLASNHISII-LPSLLPILSQQRTINLRQNPLDCTC 563

Query: 478 KMIGEFPNWLLENNTKLEFL 497
             I  F  W  EN  KLE  
Sbjct: 564 SNIY-FLEWYKENMQKLEDT 582

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.9 bits (234), Expect = 7e-20
 Identities = 31/243 (12%), Positives = 59/243 (24%), Gaps = 54/243 (22%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           +S   L+ S+N L          L  L+ L+L    +           ++L  L L+ N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
           L  +  +                                                     
Sbjct: 93  LIFMAETALSG------------------------------------------------- 103

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
                  L  L      +       + N   +++L L  N+++            ++ LD
Sbjct: 104 ----PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD 159

Query: 914 LSYNKLSGKIPRQLVDLNTLAIFIVAYN-NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 972
              N +       +  L       +  N N    I       A F   ++ G   L  + 
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219

Query: 973 LPI 975
             +
Sbjct: 220 KGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRG 120
           L L   +  +      +      +LE L LS+ +++   ++      + L  +  +DL  
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA----FTSLKMMNHVDLSH 509

Query: 121 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
           N   +S + +++ L  +  L+L+ N +   I       LS    +++  N +D
Sbjct: 510 NRLTSSSIEALSHLKGIY-LNLASNHIS-IILPSLLPILSQQRTINLRQNPLD 560

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  223 bits (572), Expect = 6e-66
 Identities = 75/300 (25%), Positives = 123/300 (41%), Gaps = 33/300 (11%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS--IPSSFGNVIFLQFLDLSN-NKL 577
            D  N  + G +          +   ++S   L     IPSS  N+ +L FL +   N L
Sbjct: 31  TDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 578 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 637
            G IP  +A     L +L +++ ++ G I   +  ++ L  L    N   G +P S+S  
Sbjct: 90  VGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 638 SSLKGLYLNNNNLSGKIPRWLGNLKGL-QHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 696
            +L G+  + N +SG IP   G+   L   + + +N L G IP  F  L +L  +D+S N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 697 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 756
            + G                             F +  +   + L+ N L   +   +  
Sbjct: 208 MLEGDASV------------------------LFGSDKNTQKIHLAKNSLAFDLGK-VGL 242

Query: 757 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNS 815
              L+ L+L +N + G +P  L +L  L  L++S NNL G IP   +       +Y NN 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  204 bits (521), Expect = 6e-59
 Identities = 71/378 (18%), Positives = 124/378 (32%), Gaps = 108/378 (28%)

Query: 629 EIPQSLSKCSSL----KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG--PIPVEF 682
           +I + L   ++L          N    G +         + ++ +   +L    PIP   
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 683 CRLDSLQILDISD-NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 741
             L  L  L I   NN+ G +P                              + L  L +
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPP------------------------AIAKLTQLHYLYI 108

Query: 742 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 801
           ++  ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP  
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 802 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861
           +                                                    G    L 
Sbjct: 169 Y----------------------------------------------------GSFSKLF 176

Query: 862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
             + +S N+L G IPP   NL  +  ++LS N L G   + F + ++ + + L+ N L+ 
Sbjct: 177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 922 KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ-----------------------FATFN 958
            +  ++     L    +  N + G +P+   Q                          F+
Sbjct: 236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 959 KSSYDGNPFLCGLPLPIC 976
            S+Y  N  LCG PLP C
Sbjct: 295 VSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  203 bits (519), Expect = 1e-58
 Identities = 85/337 (25%), Positives = 131/337 (38%), Gaps = 63/337 (18%)

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG--HIFSRIFSLRNLRWLLLEG-NHF 626
            D  N    G + D        +  L LS  +L     I S + +L  L +L + G N+ 
Sbjct: 31  TDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
           VG IP +++K + L  LY+ + N+SG IP +L  +K L  +    N L G +P     L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 687 SLQILDISDNNISGSLPSCFYPLS--IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 744
           +L  +    N ISG++P  +   S     + +S+N L G++   TF N  +L  +DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANL-NLAFVDLSRN 207

Query: 745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
            L G              ++LA N+L  ++  ++     L  LDL +N ++G +P     
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
                                                                L  L  L
Sbjct: 267 -----------------------------------------------------LKFLHSL 273

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 901
           ++S N L G I PQ GNL R      ++N      PL
Sbjct: 274 NVSFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSPL 309

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (468), Expect = 8e-52
 Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 4/214 (1%)

Query: 492 TKLEFLYLVND-SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 550
             L FLY+    +L GP    I    +L +L +++ N  G IP  +   + +LV  + S 
Sbjct: 76  PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSY 134

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 610
           NAL G++P S  ++  L  +    N+++G IPD           +++S N L G I    
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194

Query: 611 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
            +L NL ++ L  N   G+         + + ++L  N+L+  + + +G  K L  + + 
Sbjct: 195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 704
            N + G +P    +L  L  L++S NN+ G +P 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  160 bits (406), Expect = 1e-43
 Identities = 75/358 (20%), Positives = 114/358 (31%), Gaps = 83/358 (23%)

Query: 351 NNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV-HLTSIEELRLSNNHFRIPVSL 409
           N    G L      T  +  LD+S   L         + +L  +  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--------- 85

Query: 410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
                           N + G I    ++    QL  L ++                   
Sbjct: 86  ---------------INNLVGPI--PPAIAKLTQLHYLYITHTN---------------- 112

Query: 470 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 529
               +S     G  P++ L     L  L    ++L+G     I S   L  +    N   
Sbjct: 113 ----VS-----GAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 530 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 589
           G IP   G          IS N L G IP +F N + L F+DLS N L G+         
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDAS------- 214

Query: 590 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 649
                                 S +N + + L  N    ++   +    +L GL L NN 
Sbjct: 215 ------------------VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR 255

Query: 650 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI--SGSLPSC 705
           + G +P+ L  LK L  + +  N+L G IP     L    +   ++N       LP+C
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 5e-32
 Identities = 57/329 (17%), Positives = 113/329 (34%), Gaps = 86/329 (26%)

Query: 285 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG---------STLGTNSSRILD 335
               + +LD+    +         +  ++P L +L + G           +         
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAK------- 99

Query: 336 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 395
                L  L  LYI + ++ G++P  L+   +L  LD S+N L+G++  S +  L ++  
Sbjct: 100 -----LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVG 153

Query: 396 LRLSNNHF--RIPVSLEPLFNHSKLKIF-DAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
           +    N     IP S     + SKL        N + G+I  + +      L  + LS N
Sbjct: 154 ITFDGNRISGAIPDS---YGSFSKLFTSMTISRNRLTGKIPPTFA---NLNLAFVDLSRN 207

Query: 453 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 512
                                     + G+       ++   + ++L             
Sbjct: 208 -------------------------MLEGDASVLFG-SDKNTQKIHL------------- 228

Query: 513 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 572
                      + N+    +  ++G    +L   ++  N + G++P     + FL  L++
Sbjct: 229 -----------AKNSLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 573 SNNKLTGEIPDHLAMCCVNLEFLSLSNNS 601
           S N L GEIP    +     +  + +NN 
Sbjct: 276 SFNNLCGEIPQGGNL--QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.0 bits (219), Expect = 6e-19
 Identities = 71/303 (23%), Positives = 120/303 (39%), Gaps = 47/303 (15%)

Query: 15  EGCLDHERFALLRLKHFFTDPYD----KGATDCCQ--WEGVECSNTT--GRVIGLYLSET 66
           E C   ++ ALL++K    +P         TDCC   W GV C   T   RV  L LS  
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60

Query: 67  YSGEYWYLNASLFTPFQQLESLDLS-WNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNN 125
              + + + +SL      L  L +   NN+ G         +++L++L  L +     + 
Sbjct: 61  NLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSG 115

Query: 126 SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 185
           +I   ++++ +L +L  S+N L G++      SL NL  +  + N I +  +   Y    
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRI-SGAIPDSYGSFS 173

Query: 186 KL-KSLDLSGVGIRDGNKLLQSMGSFP------SLNTLHLESNNFTATLTTTQELHNFTN 238
           KL  S+ +S       N+L    G  P      +L  + L  N      +      +  N
Sbjct: 174 KLFTSMTIS------RNRL---TGKIPPTFANLNLAFVDLSRNMLEGDASV--LFGSDKN 222

Query: 239 LEYLTLDDSSL--HISLLQSIGSIFPSLKNLSMSGCEVNGVLSG---QGFPHFKSLEHLD 293
            + + L  +SL   +     +G    +L  L +     N  + G   QG    K L  L+
Sbjct: 223 TQKIHLAKNSLAFDLG---KVGLS-KNLNGLDLRN---NR-IYGTLPQGLTQLKFLHSLN 274

Query: 294 MRF 296
           + F
Sbjct: 275 VSF 277

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  231 bits (591), Expect = 2e-63
 Identities = 82/650 (12%), Positives = 173/650 (26%), Gaps = 111/650 (17%)

Query: 350 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 409
           + +         L N   +  L ++     G +  + +  LT ++ L    +   +   L
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA-IGQLTELKVLSFGTHSETVSGRL 365

Query: 410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
                 +     + K+               +  L  L   +   +    P     +  L
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425

Query: 470 KEAELSHIK-MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 528
           K+ ++ ++   I      + +  TKL+ +Y  N           +        +      
Sbjct: 426 KDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQ 479

Query: 529 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM- 587
             +  +   + L  L    +        +P    ++  LQ L+++ N+            
Sbjct: 480 YENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538

Query: 588 -------CCVNLEFLSLSNNSLKGHIFSR-IFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
                      ++   +  N+L+    S  +  +  L  L    N       ++      
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDSLQILDISDNNI 698
           L  L L+ N +      +      ++ +    N L+  P       +  +  +D S N I
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 699 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 758
                +    +                     +   +  T+ LSYN +     +     S
Sbjct: 657 GSEGRNISCSMDD-------------------YKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 759 QLSHLNLAHNNLE-------GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 811
            +S + L++N +                    L  +DL  N L  L       T      
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT------ 751

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
                                                         L  L+ +D+S N  
Sbjct: 752 ----------------------------------------------LPYLSNMDVSYNCF 765

Query: 872 VGHIPPQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
               P Q  N ++++   + H      N +    P   +    +  L +  N +  K+  
Sbjct: 766 -SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823

Query: 926 QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS--YDGNPFLCGLPL 973
           +L     L I  +A N            +         YD    + G   
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  207 bits (527), Expect = 3e-55
 Identities = 94/608 (15%), Positives = 188/608 (30%), Gaps = 91/608 (14%)

Query: 338 LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR 397
           L     +  L +     +G +P  +   T L++L    +  T S        L + +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL-TPDMSE 377

Query: 398 LSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP--KFQLKSLSLSSNYGD 455
              +  R+      L    +L + D   + IN    E   +    +  LK   + +    
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 515
                K +    +L+    ++          +   +   ++     +       L     
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNL----- 490

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG---------SIPSSFGNVIF 566
           K L  +++ N      +P  + D LP L   NI+ N              +         
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 567 LQFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 625
           +Q   +  N L  E P   ++   V L  L   +N ++        +   L  L L+ N 
Sbjct: 550 IQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQ 606

Query: 626 FVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEG-----P 677
              EIP+   +    ++GL  ++N L   IP      ++  +  +    N +        
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 678 IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNML------HGQLKEGTF 730
             ++  +  +   + +S N I       F     I  + LS N++        + K+G +
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 731 FNCSSLVTLDLSYNYLNGSIPDWI--DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 788
            N   L T+DL +N L  S+ D      L  LS++++++N      P Q    +QL+   
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 789 L------SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 838
           +        N +    P+          L    N+                        I
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND------------------------I 818

Query: 839 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT 898
            ++ E            ++   L  LD++ N  +      +          L ++     
Sbjct: 819 RKVDE------------KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

Query: 899 IPLTFSNL 906
                  +
Sbjct: 867 RGCDALGI 874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  169 bits (429), Expect = 4e-43
 Identities = 93/702 (13%), Positives = 179/702 (25%), Gaps = 163/702 (23%)

Query: 41  TDCCQWEGVECS--NTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGC 98
            +   W        +  GRV GL L+   +               +L+ L    ++    
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGA---KGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 99  AENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDS 158
               G E L+     ++            L        L    L  + +  +    E   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDY---DQRLNLSDLLQDAINRN---PEMKP 416

Query: 159 LSNLEELDINDNEIDNVE-----VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 213
           +     + + D +I N+      +S+  + L KL+ +  +       +          ++
Sbjct: 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN------SPFT---YDNIAV 467

Query: 214 NTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 273
           +     S+             N  +L  + L +      L   +  + P L++L+++   
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACNR 526

Query: 274 VNGVLSGQG--------FPHFKSLEHLDMR---FARIALNTSFLQIIGESMPSLKYLSLS 322
                  +               ++   M          + S  +     M  L  L   
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK-----MVKLGLLDCV 581

Query: 323 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
                 N  R L+        L +L +D N +        A T  +  L  S N+L    
Sbjct: 582 H-----NKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 383 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
           +      +  +  +  S N                              I+ S       
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIG----------------------SEGRNISCSMDDYKGI 673

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 502
              +++LS N                           I +FP  L    + +  + L   
Sbjct: 674 NASTVTLSYNE--------------------------IQKFPTELFATGSPISTIIL--- 704

Query: 503 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 562
                                SNN     IP                          ++ 
Sbjct: 705 ---------------------SNNLMT-SIPENSLKPKD-----------------GNYK 725

Query: 563 NVIFLQFLDLSNNKLTGEIPDHLAMC-CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621
           N   L  +DL  NKLT  + D         L  + +S N       ++  +   L+   +
Sbjct: 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGI 783

Query: 622 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 681
                                     N +  + P  +     L  + +  N +   +  +
Sbjct: 784 RHQ------------------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824

Query: 682 FCRLDSLQILDISDNNI-SGSLPSCFYPLSIKQVHLSKNMLH 722
                 L ILDI+DN   S  + S    +      L  +   
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  159 bits (403), Expect = 5e-40
 Identities = 58/446 (13%), Positives = 123/446 (27%), Gaps = 80/446 (17%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
            +   + +     V++ +    +   +++     G +P + G +  L+ L    +  T  
Sbjct: 304 FNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV- 361

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 640
                    +  +      + ++ H                          Q L+    L
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLD-----------------YDQRLNLSDLL 404

Query: 641 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 700
           +     N  +         +LK  Q I    N +   I     RL  LQI+  +++  + 
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY 462

Query: 701 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 760
                                                  +  Y     +       L  L
Sbjct: 463 DNI-----------------------------AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 761 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 820
           + + L +     ++P  L  L +LQ L+++ N          D T L +  +        
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK---- 549

Query: 821 FKTSFSISGPQGSVEKKILEIFEFTT---KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 877
                             ++IF       +    +   + +  L  LD   NK+      
Sbjct: 550 ------------------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLE 589

Query: 878 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR--QLVDLNTLAI 935
             G   ++  L L +N +        +    +E L  S+NKL   IP       +  +  
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 936 FIVAYNNLSGKIPEWTAQFATFNKSS 961
              +YN +  +    +     +   +
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGIN 674

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  126 bits (318), Expect = 9e-30
 Identities = 47/397 (11%), Positives = 110/397 (27%), Gaps = 80/397 (20%)

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           + +   +    I D+ A+  +  E L   N        +      N      E + +  +
Sbjct: 257 VPIQLKETAEYIKDYKALKAI-WEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 689
               L     + GL L      G++P                            +L  L+
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPD------------------------AIGQLTELK 350

Query: 690 ILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           +L    ++ + S        L+       K+ +    K+        L   DL  + +N 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR 410

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
           +    +  + + S ++L    +         +   + RL +LQ++  +++       +  
Sbjct: 411 NPE--MKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD 468

Query: 803 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 862
                 +      + +  +                                    L  L 
Sbjct: 469 WEDANSDYAKQYENEELSWSN----------------------------------LKDLT 494

Query: 863 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG---------TIPLTFSNLRHIESLD 913
            ++L     +  +P  + +L  +Q+LN++ N              +         I+   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 914 LSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
           + YN L        L  +  L +    +N +   +  
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (553), Expect = 3e-60
 Identities = 113/578 (19%), Positives = 197/578 (34%), Gaps = 55/578 (9%)

Query: 238 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
            +  +T          L  +   I  S KN+ +S   +  + S   F +F  L+ LD+  
Sbjct: 10  VVPNITYQCMDQK---LSKVPDDIPSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLS- 64

Query: 297 ARIALNTSFLQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 353
                      I  ++   +  L  L L+G+ +              L  L+ L      
Sbjct: 65  -----RCEIETIEDKAWHGLHHLSNLILTGNPI----QSFSPGSFSGLTSLENLVAVETK 115

Query: 354 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEP 411
           L     + +    +L+ L+V+ N +      +   +LT++  + LS N+ +      L+ 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 412 LFN-HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELK 470
           L          D   N I+   +++       +L  L+L  N+  S      L +   L 
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQG---IKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 471 EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQG 530
              L   +   E    + E +       +                  +    ++  N   
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDV-----------------TIDEFRLTYTNDFS 275

Query: 531 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 590
              V+    L ++   +++  ++              Q L +   +L       L     
Sbjct: 276 DDIVKFHC-LANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLP---- 328

Query: 591 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH--FVGEIPQSLSKCSSLKGLYLNNN 648
            L+ L+L+ N  KG I  +  +L +L +L L  N   F G    S    +SL+ L L+ N
Sbjct: 329 FLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

Query: 649 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFY 707
                +      L+ LQH+    + L+       F  L+ L  LDIS  N        F 
Sbjct: 387 GAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445

Query: 708 PL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 766
            L S+  + ++ N          F N ++L  LDLS   L        D L +L  LN++
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
           HNNL         +L  L  LD S N +          
Sbjct: 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  206 bits (527), Expect = 7e-57
 Identities = 106/621 (17%), Positives = 198/621 (31%), Gaps = 112/621 (18%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
           +  + + +  N L+    +  +N + L+ LD+S  ++      +    L  +  L L+ N
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGN 90

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
             +   S       + L+   A   ++    +    +     LK L+++ N+        
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNF-------- 139

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 521
                       +   K+   F N                                L  +
Sbjct: 140 ------------IHSCKLPAYFSNL-----------------------------TNLVHV 158

Query: 522 DVSNNNFQGHIPVEIG---DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
           D+S N  Q     ++    +     +  ++S+N +D     +F  +  L  L L  N  +
Sbjct: 159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNS 217

Query: 579 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--------NLRWLLLEGNHFVGEI 630
             I          L    L     K      IF            +    L   +   + 
Sbjct: 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD 277

Query: 631 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 690
                  +++  + L   ++       +      Q + + +  L+         L  L+ 
Sbjct: 278 IVKFHCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKS 332

Query: 691 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN--CSSLVTLDLSYNYLNG 748
           L ++ N  S S      P S+  + LS+N L       ++ +   +SL  LDLS+N    
Sbjct: 333 LTLTMNKGSISFKKVALP-SLSYLDLSRNALSF-SGCCSYSDLGTNSLRHLDLSFNGAI- 389

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDN--- 804
            +     GL +L HL+  H+ L+          L +L  LD+S  N        F     
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449

Query: 805 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 863
             TL  + N+                           +F                + L  
Sbjct: 450 LNTLKMAGNSFKDNTLS-------------------NVF-------------ANTTNLTF 477

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           LDLS  +L          L R+Q LN+SHNNL       ++ L  + +LD S+N++    
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537

Query: 924 PRQLVDLNTLAIFIVAYNNLS 944
                   +LA F +  N+++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  201 bits (513), Expect = 6e-55
 Identities = 100/594 (16%), Positives = 180/594 (30%), Gaps = 68/594 (11%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
               +++DLS+N +            S  S+L+ LDL           +   L  L++L 
Sbjct: 31  PSSTKNIDLSFNPLKILKSYS----FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLI 86

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N +Q S     F  L++LE L   + ++ ++E S     L  LK L+++   I    
Sbjct: 87  LTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLE-SFPIGQLITLKKLNVAHNFIHSCK 144

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
            L     +  +L  + L  N          +         L+LD S   I  +Q      
Sbjct: 145 -LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321
             L  L++ G   +  +      +   L    +         +        M  L  +++
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 322 SGSTLGTNSSRILDQG-LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 380
               L   +    D      LA++  + +    +       +      + L +   QL  
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK- 320

Query: 381 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 440
                P + L  ++ L L+ N   I            L   D   N ++     S+S   
Sbjct: 321 ---QFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 441 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 500
              L+ L LS N                                           F+ L 
Sbjct: 375 TNSLRHLDLSFN--------------------------GAIIMSAN---------FMGLE 399

Query: 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 560
                            L+ LD  ++  +          L  L+Y +IS           
Sbjct: 400 E----------------LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 561 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620
           F  +  L  L ++ N        ++     NL FL LS   L+   +    +L  L+ L 
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 621 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 674
           +  N+ +       ++  SL  L  + N +           K L    +  N +
Sbjct: 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  191 bits (488), Expect = 1e-51
 Identities = 97/554 (17%), Positives = 178/554 (32%), Gaps = 44/554 (7%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           L +  F+ F +L+ LDLS   I    +         L  L  L L GN   +    S + 
Sbjct: 47  LKSYSFSNFSELQWLDLSRCEIETIEDKA----WHGLHHLSNLILTGNPIQSFSPGSFSG 102

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
           L+SL +L      L  S+++     L  L++L++  N I + ++   +  L  L  +DLS
Sbjct: 103 LTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161

Query: 194 GVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 253
                                      N          +         L+LD S   I  
Sbjct: 162 Y--------------------------NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 254 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 313
           +Q        L  L++ G   +  +      +   L    +         +        M
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 314 PSLKYLSLSGSTLGTNSSRILDQG-LCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 372
             L  +++    L   +    D      LA++  + +    +       +      + L 
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLS 313

Query: 373 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 432
           +   QL       P + L  ++ L L+ N   I            L   D   N ++   
Sbjct: 314 IIRCQLK----QFPTLDLPFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFSG 366

Query: 433 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 492
             S+S      L+ L LS N   ++          EL+  +  H  +          +  
Sbjct: 367 CCSYSDLGTNSLRHLDLSFN--GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 493 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 552
           KL +L +   +    F         L  L ++ N+F+ +    +     +L + ++S   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 553 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 612
           L+      F  +  LQ L++S+N L      H      +L  L  S N ++         
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-QLYSLSTLDCSFNRIETSKGILQHF 543

Query: 613 LRNLRWLLLEGNHF 626
            ++L +  L  N  
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  187 bits (477), Expect = 3e-50
 Identities = 80/445 (17%), Positives = 145/445 (32%), Gaps = 34/445 (7%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
               +      +P    DI  S    ++S N L      SF N   LQ+LDLS  ++   
Sbjct: 16  YQCMDQKLS-KVP---DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 640
                     +L  L L+ N ++         L +L  L+             + +  +L
Sbjct: 72  EDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 641 KGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL----DSLQILDISD 695
           K L + +N +   K+P +  NL  L H+ +  N+++     +   L         LD+S 
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 696 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 750
           N I       F  + + ++ L  N     + +    N + L    L              
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 751 -PDWIDGLSQLS--HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
            P  ++GL  ++     L + N   +  ++   L  +  + L+  ++  L          
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQ 310

Query: 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
             S         P                  L+    T    + +++   L  L+ LDLS
Sbjct: 311 SLSIIRCQLKQFPTLDLPF------------LKSLTLTMNKGSISFKKVALPSLSYLDLS 358

Query: 868 CNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
            N L   G           ++ L+LS N     +   F  L  ++ LD  ++ L      
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 926 Q-LVDLNTLAIFIVAYNNLSGKIPE 949
              + L  L    ++Y N       
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDG 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  168 bits (428), Expect = 6e-44
 Identities = 79/491 (16%), Positives = 142/491 (28%), Gaps = 64/491 (13%)

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
           +    ++   N ++L++L L    +        H    L  L ++ N  Q          
Sbjct: 44  LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSG 102

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L SL         L        G +I L+ L++++N +             NL  + LS 
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNH---FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656
           N ++    + +  LR    + L  +     +  I     +   L  L L  N  S  I +
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 657 W-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ--------ILDISDNNISGSLPSCFY 707
             L NL GL    +     +    +E      ++           ++  N        F+
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 708 PLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 766
            L+ +  + L+   +   L++          +L +    L    P     L  L  L L 
Sbjct: 283 CLANVSAMSLAGVSIK-YLEDVPK--HFKWQSLSIIRCQLK-QFPTL--DLPFLKSLTLT 336

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN------TTLHESYNNNSSPDKP 820
            N     +  +   L  L  LDLS N L       + +        L  S+N        
Sbjct: 337 MNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN 394

Query: 821 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-I 879
           F                                    L  L  LD   + L         
Sbjct: 395 FMG----------------------------------LEELQHLDFQHSTLKRVTEFSAF 420

Query: 880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIV 938
            +L ++  L++S+ N        F  L  + +L ++ N            +   L    +
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 939 AYNNLSGKIPE 949
           +   L      
Sbjct: 481 SKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 4e-41
 Identities = 87/515 (16%), Positives = 157/515 (30%), Gaps = 81/515 (15%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN----LCNNSI 127
             L +        L+ L+++ N I  C         S L+ L  +DL  N    +  N +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAY---FSNLTNLVHVDLSYNYIQTITVNDL 173

Query: 128 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
                      SL +S N +   I  + F  +  L EL +  N   +  +    + L  L
Sbjct: 174 QFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 188 KSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT 243
               L     +D   L       M     +                  + H   N+  ++
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291

Query: 244 LDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNT 303
           L  + + I  L+         ++LS+  C+    L          L+ L +   + +++ 
Sbjct: 292 L--AGVSIKYLED-VPKHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNKGSISF 344

Query: 304 SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 363
             +     ++PSL YL LS + L  +              L+ L +  N     +     
Sbjct: 345 KKV-----ALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLRHLDLSFNGAI-IMSANFM 396

Query: 364 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 423
               L+ LD   + L      S  + L  +  L +S  + +                   
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK------------------- 437

Query: 424 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 483
                   I+          L +L ++ N                               
Sbjct: 438 --------IDFDGIFLGLTSLNTLKMAGN-------------------------SFKDNT 464

Query: 484 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 543
            + +  N T L FL L    L         +  RL+ L++S+NN    +     + L SL
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL-FLDSSHYNQLYSL 523

Query: 544 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
              + S N ++ S          L F +L+NN + 
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (347), Expect = 1e-33
 Identities = 68/396 (17%), Positives = 121/396 (30%), Gaps = 81/396 (20%)

Query: 555 GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 614
           GS+      V  +      + KL+ ++PD +     + + + LS N LK        +  
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFS 56

Query: 615 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 674
            L+WL L          ++      L  L L  N +    P     L  L+++V  +  L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 675 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 734
                    +L +L+ L+++ N I                               F N +
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLP-----------------------AYFSNLT 153

Query: 735 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
           +LV +DLSYNY+     + +  L +   +                       LD+S N +
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQV--------------------NLSLDMSLNPI 193

Query: 795 HGLIPSCFDNTTLHE---SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
             +    F    LHE     N NSS                        I +   +N+A 
Sbjct: 194 DFIQDQAFQGIKLHELTLRGNFNSS-----------------------NIMKTCLQNLA- 229

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT--LNLSHNNLTGTIPLTFSNLRHI 909
                V  L+ G       L    P  +  L  +      L++ N      + F  L ++
Sbjct: 230 --GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 910 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 945
            ++ L+   +       +          +    L  
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.6 bits (233), Expect = 1e-19
 Identities = 51/260 (19%), Positives = 78/260 (30%), Gaps = 49/260 (18%)

Query: 700 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759
           GSL  C   +           L  ++ +      SS   +DLS+N L           S+
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-N 814
           L  L+L+   +E         L+ L  L L+ N +    P  F        L        
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 815 SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG- 873
           S    P                                     L  L  L+++ N +   
Sbjct: 118 SLESFPIGQ----------------------------------LITLKKLNVAHNFIHSC 143

Query: 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRH----IESLDLSYNKLSGKIPRQLVD 929
            +P    NLT +  ++LS+N +          LR       SLD+S N +   I  Q   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ 202

Query: 930 LNTLAIFIVAYNNLSGKIPE 949
              L    +  N  S  I +
Sbjct: 203 GIKLHELTLRGNFNSSNIMK 222

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  190 bits (483), Expect = 7e-50
 Identities = 130/709 (18%), Positives = 227/709 (32%), Gaps = 98/709 (13%)

Query: 341  LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
            L   + L +  N +R            L++L++       +I      +L ++  L L +
Sbjct: 23   LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 401  NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
            +     +  +       L         ++  + +         L  L LS N   S+   
Sbjct: 83   SKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 461  KFLYHQHELKEAELSHIKMIGEFPNWLLEN--NTKLEFLYL------VNDSLAGPFRLPI 512
                  + LK  + S  + I       LE      L F  L         S+     +  
Sbjct: 142  PSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200

Query: 513  HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 572
              +  L  LDVS N +             ++       NA+  S   S      +     
Sbjct: 201  FRNMVLEILDVSGNGW-------------TVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 573  SNNKLTGEIPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI 630
              + +     +  A +   ++  L LS+  +   + SR+F  L++L+ L L  N      
Sbjct: 248  GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 631  PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 690
             ++     +L+ L L+ N L          L  + +I + KNH+       F  L+ LQ 
Sbjct: 307  DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 691  LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-S 749
            LD+ DN ++    +  +  SI  + LS N L   L +       +   + LS N L    
Sbjct: 367  LDLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINL----TANLIHLSENRLENLD 417

Query: 750  IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLH 808
            I  ++  +  L  L L  N        Q       L+ L L +N L     +        
Sbjct: 418  ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 809  ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 868
                                                             LS L  L L+ 
Sbjct: 478  G------------------------------------------------LSHLQVLYLNH 489

Query: 869  NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV 928
            N L    P    +LT ++ L+L+ N LT           ++E LD+S N+L    P   V
Sbjct: 490  NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA--NLEILDISRNQLLAPNPDVFV 547

Query: 929  DLNTLAIFIVAYNNLSGKIP-EWTAQFATFNKSSYDGNP--FLCGLPLPICRSLATMSEA 985
             L+      + +N    +        +      +  G P    C  P     S + +S  
Sbjct: 548  SLSV---LDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPD----SFSGVSLF 600

Query: 986  STSNEG-DDNLIDMDSFFITFTISYVIVIFGIVVVLYVNPYWRRRWLYL 1033
            S S EG D+  +     F  F +  V +   ++ +L V  +    ++  
Sbjct: 601  SLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  183 bits (467), Expect = 6e-48
 Identities = 116/650 (17%), Positives = 208/650 (32%), Gaps = 62/650 (9%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLS 135
            +       E L LS+N I     +        L +L+ L+L       +I       L 
Sbjct: 18  QVPQVLNTTERLLLSFNYIRTVTASS----FPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKSLDLSG 194
           +L  L L  + +   +    F  L +L EL +    + +  +  GY R L+ L  LDLS 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 195 VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 254
             IR    L  S G   SL ++   SN          EL             ++  +   
Sbjct: 133 NQIRSLY-LHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 255 QSIGSI-------FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
            S+             L+ L +SG      ++G         +   +             
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI------------ 237

Query: 308 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
                   +         +          GL     ++ L + +  +             
Sbjct: 238 ----LAHHIMGAGFGFHNIKDPDQNTF-AGLARS-SVRHLDLSHGFVFSLNSRVFETLKD 291

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 427
           L++L++++N++   I+      L +++ L LS N     +     +   K+   D + N 
Sbjct: 292 LKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNH 349

Query: 428 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 487
           I   I +  +     +L++L L  N   ++ F   +     L   +L  +  I    N +
Sbjct: 350 IA--IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF-LSGNKLVTLPKINLTANLI 406

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
             +  +LE L    D L    R+P      L+ L ++ N F      +     PSL    
Sbjct: 407 HLSENRLENL----DILYFLLRVP-----HLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 548 ISMNALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 602
           +  N L  +  +     +F     LQ L L++N L   +P  +      L  LSL++N L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRL 516

Query: 603 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP-RWLGNL 661
                S      NL  L +  N  +   P       SL  L + +N    +       N 
Sbjct: 517 TV--LSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFINW 571

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI 711
               ++ +          V       + +  +S               S+
Sbjct: 572 LNHTNVTIAGPP-ADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSL 620

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  162 bits (412), Expect = 4e-41
 Identities = 119/663 (17%), Positives = 233/663 (35%), Gaps = 89/663 (13%)

Query: 156 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF--- 210
              L+  E L ++ N I  V  +  +  L +L+ L+L             ++   +F   
Sbjct: 20  PQVLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELG------SQYTPLTIDKEAFRNL 72

Query: 211 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNL 267
           P+L  L L S+                +L  L L    L  ++L+     F    +L  L
Sbjct: 73  PNLRILDLGSSKIYFLHPDA--FQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRL 128

Query: 268 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSLKYLSLSGSTL 326
            +S  ++  +     F    SL+ +D    +I  +    L+ +     +L + SL+ ++L
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL--QGKTLSFFSLAANSL 186

Query: 327 GTNSSRILDQGLCPLA--HLQELYIDNNDLRGSLPWCLANTTS------------LRILD 372
            +  S    + + P     L+ L +  N     +    +N  S            +    
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 373 VSFNQLTGSISSSPLVHL--TSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 430
             F+ +      +    L  +S+  L LS+      ++         LK+ +   N+IN 
Sbjct: 247 FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKIN- 303

Query: 431 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 490
           +I    +      L+ L+LS N                           +GE  +     
Sbjct: 304 KI-ADEAFYGLDNLQVLNLSYNL--------------------------LGELYSSNFYG 336

Query: 491 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 550
             K+ ++ L  + +A          ++L+ LD+ +N     I       +PS+    +S 
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDIFLSG 390

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 610
           N     + +     +    + LS N+L      +  +   +L+ L L+ N        + 
Sbjct: 391 N----KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 611 FS-LRNLRWLLLEGNHFVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGNLKGL 664
            S   +L  L L  N         L        S L+ LYLN+N L+   P    +L  L
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

Query: 665 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 724
           + + +  N L      +     +L+ILDIS N +    P  F  L    + ++ N    +
Sbjct: 507 RGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSL--SVLDITHNKFICE 562

Query: 725 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 784
            +  TF N  +   + ++    +     + D  S +S  +L+    + E  ++  + +  
Sbjct: 563 CELSTFINWLNHTNVTIAGPPAD-IYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 785 QLL 787
            + 
Sbjct: 622 IVC 624

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  148 bits (374), Expect = 2e-36
 Identities = 101/590 (17%), Positives = 198/590 (33%), Gaps = 80/590 (13%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV 131
           ++L+   F     L  L L +  ++     +G      L  L +LDL  N   +  L   
Sbjct: 86  YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY--FRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 132 -ARLSSLTSLHLSHNILQGSIDAKEFDSLS--NLEELDINDNEIDNVEVSRGYRGLRKLK 188
             +L+SL S+  S N +   +   E + L    L    +  N + +       + +   +
Sbjct: 144 FGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202

Query: 189 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS 248
           ++                      L  L +  N +T  +       NF+N    +   S 
Sbjct: 203 NM---------------------VLEILDVSGNGWTVDI-----TGNFSNAISKSQAFSL 236

Query: 249 LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI 308
           +    +   G  F ++K+            +G       S+ HLD+    +    S    
Sbjct: 237 ILAHHIMGAGFGFHNIKDPD------QNTFAGLARS---SVRHLDLSHGFV---FSLNSR 284

Query: 309 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 368
           + E++  LK L+L+ + +    ++I D+    L +LQ L +  N L             +
Sbjct: 285 VFETLKDLKVLNLAYNKI----NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

Query: 369 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 428
             +D+  N +   I       L  ++ L L +N      +L  +     +       N++
Sbjct: 341 AYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN------ALTTIHFIPSIPDIFLSGNKL 393

Query: 429 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 488
                 +           + LS N  +++    FL     L+   L+  +      +   
Sbjct: 394 VTLPKIN------LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 489 ENNTKLEFLYLVNDSLAGPFRLPIHSH-----KRLRFLDVSNNNFQGHIPVEIGDILPSL 543
             N  LE L+L  + L   +   +          L+ L +++N     +P  +   L +L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTAL 506

Query: 544 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 603
              +++ N L     +       L+ LD+S N+L    PD       +L  L +++N   
Sbjct: 507 RGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNPDVFV----SLSVLDITHNKFI 560

Query: 604 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNNLS 651
                    L      L   N  +   P  +      S  G+ L + +  
Sbjct: 561 CEC-----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  138 bits (348), Expect = 2e-33
 Identities = 72/440 (16%), Positives = 138/440 (31%), Gaps = 66/440 (15%)

Query: 519 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
           R       N    +P     +L +     +S N +     SSF  +  LQ L+L +    
Sbjct: 7   RIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 579 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEI--PQSLS 635
             I         NL  L L ++ +   +    F  L +L  L L        +       
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 636 KCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD--SLQILD 692
              +L  L L+ N +    +    G L  L+ I    N +      E   L   +L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 693 ISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 750
           ++ N++   +   +       + + L    + G        N  ++       N ++ S 
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG--------NGWTVDITGNFSNAISKSQ 232

Query: 751 PDWIDGLSQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 804
              +     +       +N++   +        + ++ LDLS   +  L    F+     
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDL 292

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
             L+ +YN  +                       +    F             L  L  L
Sbjct: 293 KVLNLAYNKINK----------------------IADEAFYG-----------LDNLQVL 319

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
           +LS N L          L ++  ++L  N++      TF  L  +++LDL  N L+    
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---- 375

Query: 925 RQLVDLNTLAIFIVAYNNLS 944
             +  + ++    ++ N L 
Sbjct: 376 -TIHFIPSIPDIFLSGNKLV 394

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  177 bits (450), Expect = 4e-47
 Identities = 109/553 (19%), Positives = 187/553 (33%), Gaps = 62/553 (11%)

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 316
           ++  S KNL +S   +  + S   F  F  L+ LD+    I    + ++     +S+  L
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYS-FFSFPELQVLDLSRCEIQTIEDGAY-----QSLSHL 78

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
             L L+G+ +      +       L+ LQ+L     +L     + + +  +L+ L+V+ N
Sbjct: 79  STLILTGNPI----QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHFRI--PVSLEPLFNHSKLKIF-DAKNNEINGEIN 433
            +          +LT++E L LS+N  +      L  L     L +  D   N +N    
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-- 192

Query: 434 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELS-----HIKMIGEFPNWLL 488
                  + +L  L+L +N+         +     L+   L      +   + +F    L
Sbjct: 193 -QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 489 ENNTKLEFLYL---VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
           E    L          D          +    +    + +   +             L  
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 311

Query: 546 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL--K 603
            N            S      L+ L  ++NK      +   +   +LEFL LS N L  K
Sbjct: 312 VNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFK 362

Query: 604 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 663
           G      F   +L++L L  N  +  +  +      L+ L   ++NL       +     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----- 416

Query: 664 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 722
                             F  L +L  LDIS  +   +    F  L S++ + ++ N   
Sbjct: 417 ------------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 723 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 782
                  F    +L  LDLS   L    P   + LS L  LN+A N L+        RL 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518

Query: 783 QLQLLDLSDNNLH 795
            LQ + L  N   
Sbjct: 519 SLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  167 bits (424), Expect = 1e-43
 Identities = 97/486 (19%), Positives = 178/486 (36%), Gaps = 40/486 (8%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
              + L +  N LR    +   +   L++LD+S  ++  +I       L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
             +  ++L      S L+   A    +    N    +     LK L+++ N   S   P+
Sbjct: 87  PIQS-LALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE 143

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF----LYLVNDSL----AGPFRLPIH 513
           +  +   L+  +LS  K I       L    ++      L L  + +     G F+    
Sbjct: 144 YFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-- 200

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI------PSSFGNVIFL 567
              RL  L + NN    ++       L  L    + +              S+   +  L
Sbjct: 201 ---RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 568 QF--LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGN 624
                 L+      +    L  C  N+   SL + +++    FS  F  ++L  +  +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 625 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEF 682
            F         K  SLK L   +N           +L  L+ + + +N L   G      
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 741
               SL+ LD+S N +  ++ S F  L  ++ +    + L    +   F +  +L+ LD+
Sbjct: 370 FGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 742 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPS 800
           S+ +   +     +GLS L  L +A N+ +          L  L  LDLS   L  L P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 801 CFDNTT 806
            F++ +
Sbjct: 489 AFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (420), Expect = 3e-43
 Identities = 117/581 (20%), Positives = 207/581 (35%), Gaps = 83/581 (14%)

Query: 135 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
            S  +L LS N L+  + +  F S   L+ LD++  EI  +E    Y+ L  L +L L+G
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG 85

Query: 195 VGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
                 N +   ++G+F    SL  L     N  +       + +   L+ L +  + + 
Sbjct: 86  ------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQ 137

Query: 251 ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 310
              L    S   +L++L +S  ++  +         + L  + +    + L+ + +  I 
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 311 E---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
                   L  L+L  +    N   ++   +  LA L+   +   + R            
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLN---VMKTCIQGLAGLEVHRLVLGEFR------------ 238

Query: 368 LRILDVSFNQLTGSISSSPLVHLTS--IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425
                 +   L      S L  L +  IEE RL+   + +   ++     + +  F   +
Sbjct: 239 ------NEGNLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
             I          +  F  + L L +         K       LK    +  K    F  
Sbjct: 292 VTIE----RVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAFS- 342

Query: 486 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
               +   LEFL L              S   L F    + +  G           SL Y
Sbjct: 343 --EVDLPSLEFLDL--------------SRNGLSFKGCCSQSDFG---------TTSLKY 377

Query: 546 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 605
            ++S N +  ++ S+F  +  L+ LD  ++ L       + +   NL +L +S+   +  
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 435

Query: 606 IFSRIFS-LRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 663
            F+ IF+ L +L  L + GN F         ++  +L  L L+   L    P    +L  
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495

Query: 664 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 704
           LQ + M  N L+      F RL SLQ + +  N    S P 
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  164 bits (417), Expect = 9e-43
 Identities = 97/576 (16%), Positives = 193/576 (33%), Gaps = 77/576 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
               ++LDLS+N +                +L+ LDL           +   LS L++L 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI 82

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N +Q S+    F  LS+L++L   +  + ++E +     L+ LK L+++   I+   
Sbjct: 83  LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY--LTLDDSSLHISLLQSIGS 259
            L +   +  +L  L L SN   +      +L     +    L+LD S   ++ +Q    
Sbjct: 141 -LPEYFSNLTNLEHLDLSSNKIQS--IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 260 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 319
               L  L++     +  +          LE   +         +  +    ++  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 320 SLSGSTLGTN--SSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFN 376
           ++    L         +      L ++    + +  +     +        L +++  F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 436
           Q        P + L S++ L  ++N      +     +   L+  D   N ++ +   S 
Sbjct: 318 QF-------PTLKLKSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 437 SLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF 496
           S      LK L LS N   +++                        F         +LE 
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMS----------------------SNFL-----GLEQLEH 400

Query: 497 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGS 556
           L                           ++N +      +   L +L+Y +IS      +
Sbjct: 401 LDF------------------------QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 557 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 615
               F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 616 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 651
           L+ L +  N           + +SL+ ++L+ N   
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (407), Expect = 1e-41
 Identities = 113/602 (18%), Positives = 190/602 (31%), Gaps = 121/602 (20%)

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425
            S + LD+SFN L   + S        ++ L LS    +   ++E          +    
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ---TIED-------GAYQ--- 73

Query: 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
                      SL+    L +L L+ N                           I     
Sbjct: 74  -----------SLS---HLSTLILTGNP--------------------------IQSLAL 93

Query: 486 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
                 + L+ L  V  +LA     PI   K L+ L+V++N  Q     E    L +L +
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 546 FNISMNALDGSIPSSFGNVIFLQF----LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 601
            ++S N +     +    +  +      LDLS N +    P       + L  L+L NN 
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE--IRLHKLTLRNNF 211

Query: 602 LKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL--------YLNNNNLSG 652
              ++       L  L    L    F  E        S+L+GL         L   +   
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 653 -KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR-LDSLQILDISDNNISGSLPSCFYPLS 710
             I      L  +    +    +E      +      L++++                 S
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-----S 326

Query: 711 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHN 768
           +K++  + N         +  +  SL  LDLS N L+  G       G + L +L+L+ N
Sbjct: 327 LKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 769 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN----TTLHESYNNNSSPDKPFKT 823
            +   +      L QL+ LD   +NL  +   S F +      L  S+ +          
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---- 438

Query: 824 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNL 882
                            IF               LS L  L ++ N    +  P I   L
Sbjct: 439 ----------------GIFN-------------GLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
             +  L+LS   L    P  F++L  ++ L+++ N+L          L +L    +  N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

Query: 943 LS 944
             
Sbjct: 530 WD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  154 bits (391), Expect = 1e-39
 Identities = 90/469 (19%), Positives = 163/469 (34%), Gaps = 59/469 (12%)

Query: 522 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 581
                NF   IP    ++  S    ++S N L      SF +   LQ LDLS  ++   I
Sbjct: 13  QCMELNFY-KIP---DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TI 67

Query: 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSL 640
            D       +L  L L+ N ++  +    FS L +L+ L+    +        +    +L
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 641 KGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI----LDISD 695
           K L + +N + S K+P +  NL  L+H+ +  N ++     +   L  + +    LD+S 
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 696 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI----- 750
           N ++   P  F  + + ++ L  N     + +      + L    L              
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 751 -PDWIDGLSQLS--HLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
               ++GL  L+     LA+ +   +  I L   L  +    L    +  +    ++   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 807 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 866
            H    N      P             ++ K L+   FT+     A+    L  L  LDL
Sbjct: 307 QHLELVNCKFGQFPT------------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 867 SCNKLVG-------------------------HIPPQIGNLTRIQTLNLSHNNLTGTIPL 901
           S N L                            +      L +++ L+  H+NL      
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 902 -TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
             F +LR++  LD+S+             L++L +  +A N+       
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  130 bits (329), Expect = 1e-31
 Identities = 80/433 (18%), Positives = 147/433 (33%), Gaps = 29/433 (6%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN----LCNNSILS 129
           L        + L+ L+++ N I      E     S L+ L+ LDL  N    +    +  
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEY---FSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 130 SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 189
                    SL LS N +   I    F  +  L +L + +N      +    +GL  L+ 
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 190 LDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTA-TLTTTQELHNFTNLEYLTLDD- 246
             L     R+   L +    +   L  L +E              +  F  L  ++    
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 247 SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFL 306
            S+ I  ++   S     ++L +  C+             KSL+ L     +     S +
Sbjct: 290 VSVTIERVKD-FSYNFGWQHLELVNCKFGQF----PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 307 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 366
                 +PSL++L LS + L  +      Q       L+ L +  N +  ++        
Sbjct: 345 -----DLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE 396

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
            L  LD   + L      S  + L ++  L +S+ H R+          S L++     N
Sbjct: 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGN 455

Query: 427 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 486
               E       T    L  L LS    + ++ P        L+   ++  + +   P+ 
Sbjct: 456 SFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMASNQ-LKSVPDG 512

Query: 487 LLENNTKLEFLYL 499
           + +  T L+ ++L
Sbjct: 513 IFDRLTSLQKIWL 525

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 91.7 bits (228), Expect = 4e-19
 Identities = 64/347 (18%), Positives = 100/347 (28%), Gaps = 80/347 (23%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRG 120
                 Y   Y      LF     + S  L    I      E ++  S     + L+L  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI------ERVKDFSYNFGWQHLELVN 313

Query: 121 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
                        L SL  L  + N    +        L +LE LD++ N +        
Sbjct: 314 CKFGQFPTLK---LKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 181 Y-RGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNF 236
              G   LK LDLS       N ++    +F     L  L  + +N    ++      + 
Sbjct: 368 SDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 420

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
            NL YL +  +                             V     F    SLE L M  
Sbjct: 421 RNLIYLDISHTHTR--------------------------VAFNGIFNGLSSLEVLKMAG 454

Query: 297 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 356
                N                               L      L +L  L +    L  
Sbjct: 455 NSFQEN------------------------------FLPDIFTELRNLTFLDLSQCQLEQ 484

Query: 357 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
             P    + +SL++L+++ NQL  S+       LTS++++ L  N +
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  162 bits (412), Expect = 2e-42
 Identities = 89/568 (15%), Positives = 169/568 (29%), Gaps = 79/568 (13%)

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           +  + D      T    S P     +++ L LS N     +    L   + L++   K++
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 427 EINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFP 484
            IN  I     +SL     L+ L LS N                           +    
Sbjct: 61  RIN-TIEGDAFYSLG---SLEHLDLSDN--------------------------HLSSLS 90

Query: 485 NWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 543
           +      + L++L L+ +            +   L+ L + N      I       L SL
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 544 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 603
               I   +L      S  ++  +  L L  ++    + +  A    ++ +L L + +L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLA 209

Query: 604 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 663
              FS +        +            +S ++   L    L  + +         +   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTL 263

Query: 664 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH 722
                   +  +    +      +++ L I    +   L + +  L  +K++ +  + + 
Sbjct: 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323

Query: 723 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNLAHNNLE--GEVPIQ 777
             +      +  SL  LDLS N +                L  L L+ N+L    +    
Sbjct: 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382

Query: 778 LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYNN-NSSPDKPFK--TSFSISGPQ 831
           L  L  L  LD+S N  H +  SC     +     S            +      +S   
Sbjct: 383 LLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN 442

Query: 832 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 891
                 +     F  +             L  L +S NKL   +P        +  + +S
Sbjct: 443 ------LDSFSLFLPR-------------LQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481

Query: 892 HNNLTGTIPLTFSNLRHIESLDLSYNKL 919
            N L       F  L  ++ + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (386), Expect = 5e-39
 Identities = 96/506 (18%), Positives = 188/506 (37%), Gaps = 45/506 (8%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 373
            ++K L LS + +    + I    L   A+LQ L + ++ +         +  SL  LD+
Sbjct: 26  AAMKSLDLSFNKI----TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81

Query: 374 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFDAKNNEINGEI 432
           S N L+ S+SSS    L+S++ L L  N ++  + +  LF + + L+     N E   EI
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLFPNLTNLQTLRIGNVETFSEI 139

Query: 433 NESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 492
                      L  L + +    +    + L    ++    L              +  +
Sbjct: 140 RRI-DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHL-SESAFLLEIFADILS 196

Query: 493 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI---------LPSL 543
            + +L L + +LA     P+   +    +                ++         L  +
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256

Query: 544 VYFNISMNALDGSIPSSFGNV--------IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
            + + ++N L    PS    V        + ++ L +    L       +      ++ +
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRI 315

Query: 596 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQS---LSKCSSLKGLYLNNNNLS 651
           ++ N+ +   +       L++L +L L  N  V E  ++        SL+ L L+ N+L 
Sbjct: 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374

Query: 652 --GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 709
              K    L  LK L  + + +N    P+P      + ++ L++S   I   + +C  P 
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQ 431

Query: 710 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 769
           +++ + +S N L     +        L  L +S N L  ++PD       L  + ++ N 
Sbjct: 432 TLEVLDVSNNNL-----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ 484

Query: 770 LEGEVPIQLCRLNQLQLLDLSDNNLH 795
           L+        RL  LQ + L  N   
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 8e-39
 Identities = 89/508 (17%), Positives = 189/508 (37%), Gaps = 46/508 (9%)

Query: 286 FKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
             +++ LD+ F +I    +         +  +L+ L L  S +    + I       L  
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDL-----RACANLQVLILKSSRI----NTIEGDAFYSLGS 75

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
           L+ L + +N L           +SL+ L++  N       +S   +LT+++ LR+ N   
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 463
              +        + L   + K   +     +S SL     +  L+L  +    +    F 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSESAFL-LEIFA 192

Query: 464 YHQHELKEAELSHIKMIGEFPNWL--LENNTKLEFLYLVNDSLAGP-------FRLPIHS 514
                ++  EL    +     + L   E ++ ++ L      L              I  
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 515 HKRLRFLDVSNNNFQGHIPVEIGDI-------LPSLVYFNISMNALDGSIPSSFGNVIFL 567
              + F D + N      P E   +         ++   +I    L   + + +  +  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWLLLEGN 624
           + + + N+K+   +P   +    +LEFL LS N +            +  +L+ L+L  N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 625 HF--VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 682
           H   + +  + L    +L  L ++ N     +P      + ++ + +    +     V+ 
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKT 427

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           C   +L++LD+S+NN+  S     +   ++++++S+N L   L + + F    L+ + +S
Sbjct: 428 CIPQTLEVLDVSNNNLD-SFSL--FLPRLQELYISRNKLK-TLPDASLFP--VLLVMKIS 481

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNL 770
            N L        D L+ L  + L  N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (377), Expect = 7e-38
 Identities = 75/453 (16%), Positives = 158/453 (34%), Gaps = 62/453 (13%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
           ++ LD+S N    +I         +L    +  + ++     +F ++  L+ LDLS+N L
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 578 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSLS 635
           +  +         +L++L+L  N  +    + +F  L NL+ L +       EI     +
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
             +SL  L +   +L     + L +++ + H+ +  +     + +    L S++ L++ D
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 696 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT----------LDLSYNY 745
            N++    S      +             L + +F     L+            D + N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 746 LNGSIPDWIDGLS--------QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
           L    P   D +S         +  L++    L  ++      L +++ + + ++ +  +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 798 IPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
             S   +      L  S N     ++  K S                             
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMV--EEYLKNSACKGA------------------------ 359

Query: 854 QGRVLSLLAGLDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 911
                  L  L LS N L  +      +  L  + +L++S N     +P +      +  
Sbjct: 360 ----WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414

Query: 912 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
           L+LS   +   +   +    TL +  V+ NNL 
Sbjct: 415 LNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  147 bits (374), Expect = 2e-37
 Identities = 107/563 (19%), Positives = 192/563 (34%), Gaps = 94/563 (16%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
              ++SLDLS+N I      +    L   + L+ L L+ +  N     +   L SL  L 
Sbjct: 25  TAAMKSLDLSFNKITYIGHGD----LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           LS N L  S+ +  F  LS+L+ L++  N    + V+  +  L  L++L +         
Sbjct: 81  LSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN-----VE 134

Query: 202 KL----LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 257
                         SLN L +++ +     + +  L +  ++ +LTL  S     LL+  
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS--LKSIRDIHHLTLHLSESA-FLLEIF 191

Query: 258 GSIFPSLKNLSMSGCEVNGV--LSGQGFPHFKSLEHLDMRFARIALNT-SFLQIIGESMP 314
             I  S++ L +    +                ++ L  R + +   + + L  +   + 
Sbjct: 192 ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 315 SLKYLSLSGSTL-------GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
            L  +     TL        + S  + + G      ++ L+I    L   L    +    
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH--SKLKIFDAKN 425
           ++ + V  +++   +  S   HL S+E L LS N                  L+      
Sbjct: 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370

Query: 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
           N +         L     L SL +S N                           + +   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRN-----------------------TFHPMPDSCQ 407

Query: 486 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
           W                             +++RFL++S+   +  +      I  +L  
Sbjct: 408 WP----------------------------EKMRFLNLSSTGIR-VVK---TCIPQTLEV 435

Query: 546 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 605
            ++S N LD S          LQ L +S NKL   +PD        L  + +S N LK  
Sbjct: 436 LDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPDASLF--PVLLVMKISRNQLK-S 487

Query: 606 IFSRIF-SLRNLRWLLLEGNHFV 627
           +   IF  L +L+ + L  N + 
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  144 bits (366), Expect = 2e-36
 Identities = 109/559 (19%), Positives = 190/559 (33%), Gaps = 92/559 (16%)

Query: 110 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 169
            + +K LDL  N         +   ++L  L L  + +  +I+   F SL +LE LD++D
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTAT 226
           N + ++  S  +  L  LK L+L G   +     L     F    +L TL + +    + 
Sbjct: 84  NHLSSLS-SSWFGPLSSLKYLNLMGNPYQT----LGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 227 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 286
           +    +    T+L  L +   SL     QS+ S    + +L++   E   +L        
Sbjct: 139 I-RRIDFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIF-ADIL 195

Query: 287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 346
            S+ +L++R   +A        + E    +K L+  GS L   S   L + L  +  L E
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 347 LYIDNNDLRGSLPWCLA-----------NTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 395
           +  D+  L G   +  +            T ++R L +    L     S+    L  ++ 
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF-YDLSTVYSLLEKVKR 314

Query: 396 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 455
           + + N+       +   F                     S  L     L+ L LS N   
Sbjct: 315 ITVENSKVF---LVPCSF---------------------SQHLK---SLEFLDLSEN--- 344

Query: 456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA--GPFRLPIH 513
                                +       +        L+ L L  + L         + 
Sbjct: 345 --------------------LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLD 571
           + K L  LD+S N F   +P         + + N+S   +           I   L+ LD
Sbjct: 385 TLKNLTSLDISRNTFH-PMPDSC-QWPEKMRFLNLSSTGI-----RVVKTCIPQTLEVLD 437

Query: 572 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 631
           +SNN L       L      L+ L +S N LK            L  + +  N       
Sbjct: 438 VSNNNLD-SFSLFL----PRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLKSVPD 490

Query: 632 QSLSKCSSLKGLYLNNNNL 650
               + +SL+ ++L+ N  
Sbjct: 491 GIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  139 bits (352), Expect = 1e-34
 Identities = 74/401 (18%), Positives = 138/401 (34%), Gaps = 30/401 (7%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
               D  +   T  IP  L      ++ L LS N +  +I         NL+ L+L+ + 
Sbjct: 7   SGVCDGRSRSFT-SIPSGL---TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSR 61

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL-EGPIPVEFCR 684
                  +     SL+ L L++N+LS     W G L  L+++ +  N      +   F  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 685 LDSLQILDISDNNISGSLP-SCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           L +LQ L I +      +    F  L S+ ++ +    L    +  +  +   +  L L 
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLH 180

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-----------EVPIQLCRLNQLQLLDLSD 791
            +     +  + D LS + +L L   NL               P++        L D S 
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N L  L+    + + +       +       +   +    G VE   +         + Y
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 852 AYQG--RVLSLLAGLDLSCNKLVGHIPPQIG-NLTRIQTLNLSHNNLTGTIPLT---FSN 905
                  +L  +  + +  +K+   +P     +L  ++ L+LS N +             
Sbjct: 301 DLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 906 LRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLS 944
              +++L LS N L    K    L+ L  L    ++ N   
Sbjct: 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (334), Expect = 2e-32
 Identities = 93/509 (18%), Positives = 168/509 (33%), Gaps = 69/509 (13%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN-LCNNSILSSVA 132
           +    F     LE LDLS N++     +        LS LK L+L GN      + S   
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL----SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
            L++L +L + +      I   +F  L++L EL+I    + N + S+  + +R +  L L
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTL 179

Query: 193 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA-TLTTTQELHNFTNLEYLTLDDSSLHI 251
                    ++        S+  L L   N      +        + ++ L    S L  
Sbjct: 180 HLSESAFLLEIFAD--ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
                +  +   +  LS                 F       +     + +    ++   
Sbjct: 238 ESFNELLKLLRYILELS--------------EVEFDDCTLNGLGDFNPSESDVVSELGKV 283

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
              +++ L +    L       L      L  ++ + ++N+ +         +  SL  L
Sbjct: 284 ETVTIRRLHIPQFYL----FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL 339

Query: 372 DVSFNQLT--GSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEI 428
           D+S N +      +S+      S++ L LS NH R +  + E L     L   D   N  
Sbjct: 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 429 NGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL 488
           +   +         +++ L+LSS                            I      + 
Sbjct: 400 HPMPDSCQWPE---KMRFLNLSST--------------------------GIRVVKTCIP 430

Query: 489 ENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 548
                LE L + N++L       +    RL+ L +S N  +  +P     + P L+   I
Sbjct: 431 ---QTLEVLDVSNNNLD---SFSLFLP-RLQELYISRNKLK-TLPD--ASLFPVLLVMKI 480

Query: 549 SMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
           S N L       F  +  LQ + L  N  
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.4 bits (248), Expect = 1e-21
 Identities = 59/382 (15%), Positives = 134/382 (35%), Gaps = 38/382 (9%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA 132
              +      + +  L L  +  A   E         LS ++ L+LR         S + 
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIF----ADILSSVRYLELRDTNLARFQFSPLP 217

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
                + +          +  + F+ L  L    +  +E++  + +     L  L   + 
Sbjct: 218 VDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCT-----LNGLGDFNP 271

Query: 193 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 252
           S   +      +++     ++  LH+        L+T         ++ +T+++S +   
Sbjct: 272 SESDVVSELGKVET----VTIRRLHIPQFYLFYDLSTV--YSLLEKVKRITVENSKVF-L 324

Query: 253 LLQSIGSIFPSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 310
           +  S      SL+ L +S   +    + +      + SL+ L +    +       +I+ 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL- 383

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 370
            ++ +L  L +S +T        +         ++ L + +  +R  +  C+    +L +
Sbjct: 384 LTLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEV 435

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 430
           LDVS N L  S S      L  ++EL +S N  +   +L        L +     N++  
Sbjct: 436 LDVSNNNLD-SFSL----FLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQLK- 486

Query: 431 EINESHSLTPKFQLKSLSLSSN 452
            + +         L+ + L +N
Sbjct: 487 SVPDG-IFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 6e-18
 Identities = 47/246 (19%), Positives = 81/246 (32%), Gaps = 44/246 (17%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
              D+  + D    + + S+PS     ++K + LS N +   +  G    C++L  L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL-TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSC 801
            + +N    D    L  L HL+L+ N+L          L+ L+ L+L  N    L + S 
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 802 FDN----TTLHESYNNNSS--PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 855
           F N     TL        S      F                                  
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAG-------------------------------- 146

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 915
             L+ L  L++    L  +    + ++  I  L L  +     + +    L  +  L+L 
Sbjct: 147 --LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 916 YNKLSG 921
              L+ 
Sbjct: 205 DTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 5e-16
 Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 31/231 (13%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSIL- 128
           +Y  +++++  ++++ + +  + +        +       L  L+ LDL  NL     L 
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKV------FLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 129 --SSVARLSSLTSLHLSHNILQG-SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 185
             +      SL +L LS N L+      +   +L NL  LDI+ N    +      +   
Sbjct: 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP--DSCQWPE 410

Query: 186 KLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 244
           K++ L+LS         +         +L  L + +NN  +             L+ L +
Sbjct: 411 KMRFLNLS------STGIRVVKTCIPQTLEVLDVSNNNLDSFSL------FLPRLQELYI 458

Query: 245 DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
             +   +  L    S+FP L  + +S  ++   +    F    SL+ + + 
Sbjct: 459 SRN--KLKTLPD-ASLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLH 505

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 4e-15
 Identities = 38/221 (17%), Positives = 69/221 (31%), Gaps = 44/221 (19%)

Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 790
            +C +    D        SIP  +   + +  L+L+ N +       L     LQ+L L 
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 791 DNNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFT 845
            + ++ +    F +      L  S N+ SS     F                        
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGP---------------------- 96

Query: 846 TKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIP-LTF 903
                       LS L  L+L  N      +     NLT +QTL + +      I  + F
Sbjct: 97  ------------LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 904 SNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
           + L  +  L++    L     + L  +  +    +  +  +
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (401), Expect = 2e-41
 Identities = 98/476 (20%), Positives = 171/476 (35%), Gaps = 89/476 (18%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
           LA   +  +   ++  ++     +   +  L      +    S   + +L ++ ++  SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 77

Query: 401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
           N       + PL N +KL      NN+I   I    +LT    L  L+L +N        
Sbjct: 78  NQLT---DITPLKNLTKLVDILMNNNQIAD-ITPLANLT---NLTGLTLFNN-------- 122

Query: 461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 520
                       +++ I  +         N T L  L L +++++      +     L+ 
Sbjct: 123 ------------QITDIDPLK--------NLTNLNRLELSSNTISDI--SALSGLTSLQQ 160

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           L   N       P+     L +L   +IS N +  S  S    +  L+ L  +NN+++  
Sbjct: 161 LSFGNQ-VTDLKPLAN---LTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDI 214

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 640
            P  +     NL+ LSL+ N LK      + SL NL  L L  N      P  LS  + L
Sbjct: 215 TPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 641 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 700
             L L  N +S   P  L  L  L ++ + +N LE   P     L +L  L +  NNIS 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 701 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 760
             P                            + + L  L    N ++      +  L+ +
Sbjct: 324 ISP--------------------------VSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 761 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 816
           + L+  HN +    P+    L ++  L L+D        +   N ++  +  N + 
Sbjct: 356 NWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  155 bits (394), Expect = 2e-40
 Identities = 103/503 (20%), Positives = 178/503 (35%), Gaps = 51/503 (10%)

Query: 299 IALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGS 357
           I  +T   QI    ++       L  + +    S         L  +  L  D   ++ S
Sbjct: 8   ITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS------QTDLDQVTTLQADRLGIK-S 60

Query: 358 LPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 417
           +   +    +L  ++ S NQLT     +PL +LT + ++ ++NN       + PL N + 
Sbjct: 61  ID-GVEYLNNLTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIA---DITPLANLTN 113

Query: 418 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 477
           L      NN+I   I+   +LT    L  L LSSN   +++    L     L++    + 
Sbjct: 114 LTGLTLFNNQITD-IDPLKNLT---NLNRLELSSN---TISDISALSGLTSLQQLSFGN- 165

Query: 478 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 537
           ++    P   L N T LE L + ++ ++      +     L  L  +NN      P+ I 
Sbjct: 166 QVTDLKP---LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI- 219

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
             L +L   +++ N L      +  ++  L  LDL+NN+++   P         L  L L
Sbjct: 220 --LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKL 272

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 657
             N +     S +  L  L  L L  N      P  +S   +L  L L  NN+S   P  
Sbjct: 273 GANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-- 326

Query: 658 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
           + +L  LQ +    N +          L ++  L    N IS  L        I Q+ L+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLN 383

Query: 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI 776
                           +++   +   N     I P  I      +  ++  N        
Sbjct: 384 DQAWTNAPVN----YKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-YTNE 438

Query: 777 QLCRLNQLQLLDLSDNNLHGLIP 799
                +Q   +        G + 
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 1e-37
 Identities = 95/497 (19%), Positives = 182/497 (36%), Gaps = 85/497 (17%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
             +     L   N+            + L ++  L           +  V  L++LT ++
Sbjct: 23  LAEKMKTVLGKTNV------TDTVSQTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQIN 74

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
            S+N L          +L+ L ++ +N+N+I ++        L  L  L L    I D  
Sbjct: 75  FSNNQLTDIT---PLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQITD-- 126

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
             +  + +  +LN L L SN     ++    L   T+L+ L+  +    +  L +     
Sbjct: 127 --IDPLKNLTNLNRLELSSNT----ISDISALSGLTSLQQLSFGNQVTDLKPLAN----L 176

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321
            +L+ L +S  +V+ +          +LE L     +I+  T         + +L  LSL
Sbjct: 177 TTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSL 228

Query: 322 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 381
           +G+ L    +      L  L +L +L + NN +    P  L+  T L  L +  NQ++  
Sbjct: 229 NGNQLKDIGT------LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-- 278

Query: 382 ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK 441
            + SPL  LT++  L L+ N       + P+ N   L       N I+  I+   SLT  
Sbjct: 279 -NISPLAGLTALTNLELNENQLE---DISPISNLKNLTYLTLYFNNISD-ISPVSSLT-- 331

Query: 442 FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 501
            +L+ L   +N                        +  +       L N T + +L   +
Sbjct: 332 -KLQRLFFYNN-----------------------KVSDVSS-----LANLTNINWLSAGH 362

Query: 502 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 561
           + ++     P+ +  R+  L +++  +    PV     +           AL    P++ 
Sbjct: 363 NQISDL--TPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL--IAPATI 417

Query: 562 GNVIFLQFLDLSNNKLT 578
            +       D++ N  +
Sbjct: 418 SDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 2e-36
 Identities = 95/448 (21%), Positives = 167/448 (37%), Gaps = 68/448 (15%)

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
                +     L   ++     +      ++  L       +    VE    L +L   N
Sbjct: 20  DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSIDGVEY---LNNLTQIN 74

Query: 548 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
            S N L    P    N+  L  + ++NN++    P        NL  L+L NN +     
Sbjct: 75  FSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA---NLTNLTGLTLFNNQITD--I 127

Query: 608 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 667
             + +L NL  L L  N        +LS  +SL+ L   N  ++   P  L NL  L+ +
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERL 182

Query: 668 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 727
            +  N +         +L +L+ L  ++N IS  +       ++ ++ L+ N L      
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQLK---DI 236

Query: 728 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLL 787
           GT  + ++L  LDL+ N ++   P  + GL++L+ L L  N +    P+    L  L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNL 292

Query: 788 DLSDNNLHGLIP--SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 845
           +L++N L  + P  +  + T L   +N                         I +I   +
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFN------------------------NISDISPVS 328

Query: 846 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSN 905
           +           L+ L  L    NK+       + NLT I  L+  HN ++   PL  +N
Sbjct: 329 S-----------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL--AN 373

Query: 906 LRHIESLDLSYNKLSGKIPRQLVDLNTL 933
           L  I  L L+    +        +++  
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIP 401

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 3e-35
 Identities = 96/491 (19%), Positives = 165/491 (33%), Gaps = 78/491 (15%)

Query: 209 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 268
           +        L   N    +T T    +   +  L      L I  +  +     +L  ++
Sbjct: 22  ALAEKMKTVLGKTN----VTDTVSQTDLDQVTTLQA--DRLGIKSIDGVEY-LNNLTQIN 74

Query: 269 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 328
            S  ++  +       +   L  + M   +IA  T        ++ +L  L+L  + +  
Sbjct: 75  FSNNQLTDI---TPLKNLTKLVDILMNNNQIADITPL-----ANLTNLTGLTLFNNQITD 126

Query: 329 NSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 388
                    L  L +L  L + +N +       L+  TSL+ L              PL 
Sbjct: 127 IDP------LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQV----TDLKPLA 174

Query: 389 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 448
           +LT++E L +S+N       +  L   + L+   A NN+I+  I     LT    L  LS
Sbjct: 175 NLTTLERLDISSNKVS---DISVLAKLTNLESLIATNNQISD-ITPLGILT---NLDELS 227

Query: 449 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 508
           L+ N                        +K IG        + T L  L L N+ ++   
Sbjct: 228 LNGN-----------------------QLKDIGTL-----ASLTNLTDLDLANNQISNL- 258

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
             P+    +L  L +  N      P+     L +L    ++ N L+   P    N+  L 
Sbjct: 259 -APLSGLTKLTELKLGANQISNISPLAG---LTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
           +L L  N ++   P         L+ L   NN +     S + +L N+ WL    N    
Sbjct: 313 YLTLYFNNISDISPVS---SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
             P  L+  + +  L LN+   +     +  N+     +      L  P         S 
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA--TISDGGSY 423

Query: 689 QILDISDNNIS 699
              DI+ N  S
Sbjct: 424 TEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (353), Expect = 4e-35
 Identities = 89/514 (17%), Positives = 179/514 (34%), Gaps = 63/514 (12%)

Query: 124 NNSI--LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 181
           +  I  + +   L+      L    +  ++       L  +  L  +   I +++   G 
Sbjct: 11  DTPINQIFTDTALAEKMKTVLGKTNVTDTV---SQTDLDQVTTLQADRLGIKSID---GV 64

Query: 182 RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 241
             L  L  ++ S   + D    +  + +   L  + + +N     +     L N TNL  
Sbjct: 65  EYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQ----IADITPLANLTNLTG 116

Query: 242 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 301
           LTL ++   I+ +  + +   +L  L +S   ++ +          SL+ L         
Sbjct: 117 LTLFNN--QITDIDPLKN-LTNLNRLELSSNTISDI---SALSGLTSLQQLS-------F 163

Query: 302 NTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 360
                 +    ++ +L+ L +S      N    +   L  L +L+ L   NN +    P 
Sbjct: 164 GNQVTDLKPLANLTTLERLDISS-----NKVSDIS-VLAKLTNLESLIATNNQISDITP- 216

Query: 361 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 420
            L   T+L  L ++ NQL        L  LT++ +L L+NN      +L PL   +KL  
Sbjct: 217 -LGILTNLDELSLNGNQLK---DIGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTE 269

Query: 421 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 480
                N+I+  I+    LT    L +L L+ N    +     + +   L    L    + 
Sbjct: 270 LKLGANQISN-ISPLAGLT---ALTNLELNEN---QLEDISPISNLKNLTYLTLYFNNIS 322

Query: 481 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 540
              P   + + TKL+ L+  N+ ++      + +   + +L   +N      P+     L
Sbjct: 323 DISP---VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA---NL 374

Query: 541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 600
             +    ++  A   +  +   NV     +      L    P  ++    +     ++ N
Sbjct: 375 TRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISD-GGSYTEPDITWN 431

Query: 601 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL 634
                     ++      +      F G + Q L
Sbjct: 432 LPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  139 bits (352), Expect = 4e-35
 Identities = 93/505 (18%), Positives = 189/505 (37%), Gaps = 86/505 (17%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
            T   Q+ +L      I      + ++ +  L+ L +++   N    + ++ +  L+ L 
Sbjct: 42  QTDLDQVTTLQADRLGI------KSIDGVEYLNNLTQINFSNN--QLTDITPLKNLTKLV 93

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            + +++N +          +L+NL  L + +N+I +++     + L  L  L+LS   I 
Sbjct: 94  DILMNNNQIADIT---PLANLTNLTGLTLFNNQITDIDPL---KNLTNLNRLELSSNTIS 147

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 258
           D    + ++    SL  L    N     +T  + L N T LE L +  SS  +S +  + 
Sbjct: 148 D----ISALSGLTSLQQLSF-GNQ----VTDLKPLANLTTLERLDI--SSNKVSDISVLA 196

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 318
               +L++L  +  +++ +          +L+ L +   ++    +       S+ +L  
Sbjct: 197 K-LTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKDIGTL-----ASLTNLTD 247

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 378
           L L+ + +   +       L  L  L EL +  N +    P  LA  T+L  L+++ NQL
Sbjct: 248 LDLANNQISNLA------PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299

Query: 379 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSL 438
                 SP+ +L ++  L L  N+      + P+ + +KL+     NN+++  ++   +L
Sbjct: 300 E---DISPISNLKNLTYLTLYFNNIS---DISPVSSLTKLQRLFFYNNKVSD-VSSLANL 352

Query: 439 TPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLY 498
           T    +  LS   N                        I  +       L N T++  L 
Sbjct: 353 T---NINWLSAGHN-----------------------QISDLTP-----LANLTRITQLG 381

Query: 499 LVNDSLAGPFRLPIHSHKRLRFLD-VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 557
           L + +       P++    +   + V N       P  I D   S    +I+ N L    
Sbjct: 382 LNDQAWTN---APVNYKANVSIPNTVKNVTGALIAPATISD-GGSYTEPDITWN-LPSYT 436

Query: 558 PSSFGNVIFLQFLDLSNNKLTGEIP 582
                       +       +G + 
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (342), Expect = 9e-34
 Identities = 86/413 (20%), Positives = 149/413 (36%), Gaps = 69/413 (16%)

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L   +   +    +  ++     ++  +  L      +     D +     NL  ++ SN
Sbjct: 23  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVE-YLNNLTQINFSN 77

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           N L       + +L  L  +L+  N      P  L+  ++L GL L NN ++   P  L 
Sbjct: 78  NQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LK 131

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
           NL  L  + +  N +          L SLQ L    N ++   P      +++++ +S N
Sbjct: 132 NLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPLANLT-TLERLDISSN 187

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 779
            +            ++L +L  + N ++   P  +  L+ L  L+L  N L+      L 
Sbjct: 188 KVSD---ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 780 RLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVE 835
            L  L  LDL++N +  L P         T L    N                       
Sbjct: 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN----------------------- 275

Query: 836 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 895
            +I  I                L+ L  L+L+ N+L    P  I NL  +  L L  NN+
Sbjct: 276 -QISNISPLAG-----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321

Query: 896 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 948
           +   P+  S+L  ++ L    NK+S      L +L  +      +N +S   P
Sbjct: 322 SDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (321), Expect = 4e-31
 Identities = 79/389 (20%), Positives = 132/389 (33%), Gaps = 63/389 (16%)

Query: 559 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 618
            +   +       L    +T  +          +  L      +K      +  L NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 619 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 678
           +    N      P  L   + L  + +NNN ++   P  L NL  L  + +  N +    
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 679 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 738
           P     L +L  L++S N IS  + +     S++Q+                 N ++L  
Sbjct: 129 P--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ----VTDLKPLANLTTLER 181

Query: 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 798
           LD+S N +  S    +  L+ L  L   +N +    P+    L  L  L L+ N L  + 
Sbjct: 182 LDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIG 237

Query: 799 P-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 856
             +   N T L  + N                         I  +   +           
Sbjct: 238 TLASLTNLTDLDLANNQ------------------------ISNLAPLSG---------- 263

Query: 857 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 916
            L+ L  L L  N++   I P +  LT +  L L+ N L    P+  SNL+++  L L +
Sbjct: 264 -LTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYF 318

Query: 917 NKLSGKIPRQLVDLNTLAIFIVAYNNLSG 945
           N +S   P  +  L  L       N +S 
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD 345

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (278), Expect = 1e-25
 Identities = 71/381 (18%), Positives = 124/381 (32%), Gaps = 89/381 (23%)

Query: 572 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP 631
             +  +     D             L   ++   +      L  +  L  +      +  
Sbjct: 9   TQDTPINQIFTDT---ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSI 61

Query: 632 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 691
             +   ++L  +  +NN L+   P  L NL  L  I+M  N +    P     L +L  L
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 692 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 751
            + +N I+   P                            N ++L  L+LS N ++    
Sbjct: 118 TLFNNQITDIDP--------------------------LKNLTNLNRLELSSNTISDISA 151

Query: 752 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTL 807
             + GL+ L  L+   N +    P+    L  L+ LD+S N +  +            +L
Sbjct: 152 --LSGLTSLQQLSF-GNQVTDLKPLA--NLTTLERLDISSNKVSDISV--LAKLTNLESL 204

Query: 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
             + N                        +I +I                L+ L  L L+
Sbjct: 205 IATNN------------------------QISDITPLGI-----------LTNLDELSLN 229

Query: 868 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 927
            N+L       + +LT +  L+L++N ++   PL  S L  +  L L  N++S   P  L
Sbjct: 230 GNQLKD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--L 283

Query: 928 VDLNTLAIFIVAYNNLSGKIP 948
             L  L    +  N L    P
Sbjct: 284 AGLTALTNLELNENQLEDISP 304

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  148 bits (375), Expect = 4e-38
 Identities = 74/298 (24%), Positives = 128/298 (42%), Gaps = 6/298 (2%)

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
            +P       R LD+  N  +  +  +     P L    ++ N +    P +F N+  L+
Sbjct: 25  AVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFV 627
            L L +N+L   IP  +     NL  L +S N +   +   +F  L NL+ L +  N  V
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 628 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 687
               ++ S  +SL+ L L   NL+      L +L GL  + +   ++       F RL  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 688 LQILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           L++L+IS      ++ P+C Y L++  + ++   L   +      +   L  L+LSYN +
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPI 260

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
           +      +  L +L  + L    L    P     LN L++L++S N L  L  S F +
Sbjct: 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  142 bits (359), Expect = 6e-36
 Identities = 67/379 (17%), Positives = 124/379 (32%), Gaps = 65/379 (17%)

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVG 628
           +     +    +P+ +         L L  N +K  +    F+   +L  L L  N    
Sbjct: 16  VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSA 70

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
             P + +   +L+ L L +N L          L  L  + + +N +   +   F  L +L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 689 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           + L++ DN++       F  L S++Q+ L K  L   +      +   L+ L L +  +N
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

Query: 748 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
                    L +L  L ++H      +         L  L ++  NL  +      +   
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246

Query: 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
                                                             L  L  L+LS
Sbjct: 247 --------------------------------------------------LVYLRFLNLS 256

Query: 868 CNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 926
            N +   I   +   L R+Q + L    L    P  F  L ++  L++S N+L+  +   
Sbjct: 257 YNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEES 314

Query: 927 LVD-LNTLAIFIVAYNNLS 944
           +   +  L   I+  N L+
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  134 bits (338), Expect = 3e-33
 Identities = 73/387 (18%), Positives = 129/387 (33%), Gaps = 86/387 (22%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
            I       ++  N +       F +   L+ L+L+ N ++  +         NL  L L
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87

Query: 598 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656
            +N LK  I   +F+ L NL  L +  N  V  +        +LK L + +N+L   I  
Sbjct: 88  RSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YIS- 144

Query: 657 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVH 715
                                    F  L+SL+ L +   N++         L  +  + 
Sbjct: 145 ----------------------HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182

Query: 716 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 775
           L    ++  +++ +F     L  L++S+     ++         L+ L++ H NL   VP
Sbjct: 183 LRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVP 240

Query: 776 IQLCR-LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 834
               R L  L+ L+LS N +  +  S                                  
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------ 270

Query: 835 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHN 893
                                  L  L  + L   +L   + P     L  ++ LN+S N
Sbjct: 271 -----------------------LLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGN 306

Query: 894 NLTGTIPLTFSNLRHIESLDLSYNKLS 920
            LT      F ++ ++E+L L  N L+
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  125 bits (315), Expect = 2e-30
 Identities = 86/338 (25%), Positives = 139/338 (41%), Gaps = 50/338 (14%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 136
             +   LDL  N I    ++E     +    L++L+L  N+     +S+V       L +
Sbjct: 31  PTETRLLDLGKNRIKTLNQDE----FASFPHLEELELNENI-----VSAVEPGAFNNLFN 81

Query: 137 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 196
           L +L L  N L+  I    F  LSNL +LDI++N+I  +     ++ L  LKSL++    
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVG--- 136

Query: 197 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 252
               N L+  S  +F    SL  L LE  N T+  T    L +   L  L L    L+I+
Sbjct: 137 ---DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRL--RHLNIN 189

Query: 253 LLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTSFL 306
            ++     F     LK L +S       ++        +L  L +       +       
Sbjct: 190 AIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA-V- 244

Query: 307 QIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 366
                 +  L++L+LS + +    S I    L  L  LQE+ +    L    P+      
Sbjct: 245 ----RHLVYLRFLNLSYNPI----STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
            LR+L+VS NQLT ++  S    + ++E L L +N   
Sbjct: 297 YLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  122 bits (307), Expect = 2e-29
 Identities = 64/321 (19%), Positives = 109/321 (33%), Gaps = 36/321 (11%)

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE 535
           I         +   LE L L  + +     G F    ++   LR L + +N  +  IP+ 
Sbjct: 44  IKTLNQDEFASFPHLEELELNENIVSAVEPGAF----NNLFNLRTLGLRSNRLK-LIPLG 98

Query: 536 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
           +   L +L   +IS N +   +   F ++  L+ L++ +N L   I         +LE L
Sbjct: 99  VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157

Query: 596 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           +L   +L   I +   S L  L  L L   +       S  +   LK L +++      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 714
                    L  + +   +L     +    L  L+ L++S N IS               
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS--------------- 261

Query: 715 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 774
                     ++         L  + L    L    P    GL+ L  LN++ N L    
Sbjct: 262 ---------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

Query: 775 PIQLCRLNQLQLLDLSDNNLH 795
                 +  L+ L L  N L 
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (298), Expect = 4e-28
 Identities = 68/338 (20%), Positives = 135/338 (39%), Gaps = 33/338 (9%)

Query: 123 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C+     +V     +    L L  N ++ +++  EF S  +LEEL++N+N +  VE    
Sbjct: 18  CHRKRFVAVPEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVE-PGA 75

Query: 181 YRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 239
           +  L  L++L L    ++     +   +    +L  L +  N     L       +  NL
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTGL---SNLTKLDISENKIVILLDYM--FQDLYNL 130

Query: 240 EYLTLDD---SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
           + L + D     +       +     SL+ L++  C +   +  +   H   L  L +R 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGL----NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 297 ARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 355
             I A+         + +  LK L +S           +        +L  L I + +L 
Sbjct: 186 LNINAIRDYSF----KRLYRLKVLEISHW----PYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 356 GSLPWC-LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 414
            ++P+  + +   LR L++S+N ++ +I  S L  L  ++E++L      + V       
Sbjct: 238 -AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRG 294

Query: 415 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
            + L++ +   N++   + ES        L++L L SN
Sbjct: 295 LNYLRVLNVSGNQLT-TLEES-VFHSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 94.0 bits (234), Expect = 4e-20
 Identities = 51/268 (19%), Positives = 94/268 (35%), Gaps = 60/268 (22%)

Query: 687 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
             ++LD+  N I       F     ++++ L++N++   ++ G F N  +L TL L  N 
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 746 LNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
           L   IP  +  GLS L+ L+++ N +   +      L  L+ L++ DN+L  +    F  
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
                                                                L+ L  L
Sbjct: 151 -----------------------------------------------------LNSLEQL 157

Query: 865 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
            L    L   IP +   +L  +  L L H N+      +F  L  ++ L++S+      +
Sbjct: 158 TLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWT 951
               +    L    + + NL+  +P   
Sbjct: 217 TPNCLYGLNLTSLSITHCNLT-AVPYLA 243

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 7e-17
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 60/266 (22%)

Query: 686 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
              + +         ++P    P   + + L KN +   L +  F +   L  L+L+ N 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI-PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI 67

Query: 746 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFDN 804
           ++   P   + L  L  L L  N L+  +P+ +   L+ L  LD+S+N +  L+   F +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
                                                                L  L  L
Sbjct: 127 -----------------------------------------------------LYNLKSL 133

Query: 865 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           ++  N LV +I  +    L  ++ L L   NLT       S+L  +  L L +  ++   
Sbjct: 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPE 949
                 L  L +  +++      +  
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 84.0 bits (208), Expect = 7e-17
 Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 22/183 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           +     +    L  L L   NI    +        RL +LK L++      +++  +   
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNINAIRDYS----FKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
             +LTSL ++H  L  ++       L  L  L+++ N I  +E       L +L+ + L 
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE-GSMLHELLRLQEIQLV 280

Query: 194 GVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQE--LHNFTNLEYLTLDDS 247
                 G +L      +F     L  L++  N     LTT +E   H+  NLE L LD +
Sbjct: 281 ------GGQLAVVEPYAFRGLNYLRVLNVSGNQ----LTTLEESVFHSVGNLETLILDSN 330

Query: 248 SLH 250
            L 
Sbjct: 331 PLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.8 bits (192), Expect = 5e-15
 Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV- 131
            L   +F     L+SL++  N++   +        S L+ L++L L         L+S+ 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHR----AFSGLNSLEQLTLEKCN-----LTSIP 168

Query: 132 ----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
               + L  L  L L H  +  +I    F  L  L+ L+I+     +        GL  L
Sbjct: 169 TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-L 226

Query: 188 KSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 246
            SL ++   +       ++ +     L  L+L  N  +    +   LH    L+ + L  
Sbjct: 227 TSLSITHCNLTAVPYLAVRHL---VYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLVG 281

Query: 247 SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
             L   +          L+ L++SG ++   L    F    +LE L +
Sbjct: 282 GQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLIL 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (363), Expect = 2e-37
 Identities = 82/377 (21%), Positives = 143/377 (37%), Gaps = 34/377 (9%)

Query: 324 STLGTNSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
           +TL T  + I        LA      +    +   +        S+  L V+  ++    
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA--- 57

Query: 383 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
           S   + +LT++E L L+ N       + PL N  KL       N+I  +I+   +LT   
Sbjct: 58  SIQGIEYLTNLEYLNLNGNQIT---DISPLSNLVKLTNLYIGTNKIT-DISALQNLT--- 110

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 502
            L+ L L+ +   +++    L +  ++    L     + +     L N T L +L +   
Sbjct: 111 NLRELYLNED---NISDISPLANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES 165

Query: 503 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 562
            +      PI +   L  L ++ N  +   P+     L SL YF   +N +    P    
Sbjct: 166 KVKDVT--PIANLTDLYSLSLNYNQIEDISPL---ASLTSLHYFTAYVNQITDITP--VA 218

Query: 563 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLE 622
           N+  L  L + NNK+T   P         L +L +  N +     + +  L  L+ L + 
Sbjct: 219 NMTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 623 GNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEF 682
            N         L+  S L  L+LNNN L  +    +G L  L  + + +NH+    P   
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L 329

Query: 683 CRLDSLQILDISDNNIS 699
             L  +   D ++  I 
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (355), Expect = 2e-36
 Identities = 75/422 (17%), Positives = 146/422 (34%), Gaps = 92/422 (21%)

Query: 532 IPVEIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 586
           +P  I  I     L   +   +   ++   +      +  +  L ++  K+   I     
Sbjct: 8   LPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG--I 62

Query: 587 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 646
               NLE+L+L+ N +     S + +L  L  L +  N        +L   ++L+ LYLN
Sbjct: 63  EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLN 118

Query: 647 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 706
            +N+S   P  L NL  +  + +  NH    +      +  L  L ++++ +    P   
Sbjct: 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--- 172

Query: 707 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 766
                                    N + L +L L+YN +    P  +  L+ L +    
Sbjct: 173 -----------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAY 207

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFK 822
            N +    P  +  + +L  L + +N +  L P    N    T L    N  S  +    
Sbjct: 208 VNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN---- 259

Query: 823 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 882
              ++                              L+ L  L++  N++       + NL
Sbjct: 260 ---AVKD----------------------------LTKLKMLNVGSNQISD--ISVLNNL 286

Query: 883 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
           +++ +L L++N L          L ++ +L LS N ++   P  L  L+ +     A   
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 943 LS 944
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  139 bits (352), Expect = 4e-36
 Identities = 79/452 (17%), Positives = 153/452 (33%), Gaps = 109/452 (24%)

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
              L      +    P   A+        +    +T  +       L SI +L ++    
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVV---TQEELESITKLVVAGEKV 56

Query: 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFL 463
               S++ +   + L+  +   N+I   I+   +L    +L +L + +N           
Sbjct: 57  A---SIQGIEYLTNLEYLNLNGNQITD-ISPLSNLV---KLTNLYIGTN----------- 98

Query: 464 YHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 523
                    +++ I  +    N                                LR L +
Sbjct: 99  ---------KITDISALQNLTN--------------------------------LRELYL 117

Query: 524 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP- 582
           + +N     P+     L  +   N+  N    S  S   N+  L +L ++ +K+    P 
Sbjct: 118 NEDNISDISPL---ANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPI 173

Query: 583 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKG 642
            +L     +L  LSL+ N ++    S + SL +L +     N      P  ++  + L  
Sbjct: 174 ANL----TDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 643 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 702
           L + NN ++   P  L NL  L  + +  N +          L  L++L++  N IS  +
Sbjct: 226 LKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQIS-DI 280

Query: 703 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 762
                                        N S L +L L+ N L     + I GL+ L+ 
Sbjct: 281 SV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 763 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
           L L+ N++    P+    L+++   D ++  +
Sbjct: 316 LFLSQNHITDIRPLA--SLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (340), Expect = 2e-34
 Identities = 73/386 (18%), Positives = 136/386 (35%), Gaps = 63/386 (16%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
              L      +    PD             L   S+   +      L ++  L++ G   
Sbjct: 2   AATLATLPAPINQIFPD---ADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV 56

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
                Q +   ++L+ L LN N ++   P  L NL  L ++ +  N +          L 
Sbjct: 57  --ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLT 110

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           +L+ L ++++NIS   P       +  ++L  N     L      N + L  L ++ + +
Sbjct: 111 NLRELYLNEDNISDISPLANLT-KMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKV 167

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 804
               P  I  L+ L  L+L +N +E   P  L  L  L       N +  + P    N  
Sbjct: 168 KDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMT 221

Query: 805 --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 862
              +L    N                        KI ++                LS L 
Sbjct: 222 RLNSLKIGNN------------------------KITDLSPLAN-----------LSQLT 246

Query: 863 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 922
            L++  N++       + +LT+++ LN+  N ++       +NL  + SL L+ N+L  +
Sbjct: 247 WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNE 302

Query: 923 IPRQLVDLNTLAIFIVAYNNLSGKIP 948
               +  L  L    ++ N+++   P
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  132 bits (334), Expect = 1e-33
 Identities = 74/369 (20%), Positives = 148/369 (40%), Gaps = 48/369 (13%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSH 144
             +L      I        +   + L++  +  L+    + + + +   L S+T L ++ 
Sbjct: 2   AATLATLPAPI------NQIFPDADLAEGIRAVLQKA--SVTDVVTQEELESITKLVVAG 53

Query: 145 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL 204
             +      +  + L+NLE L++N N+I ++        L KL +L +    I D    +
Sbjct: 54  EKVA---SIQGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKITD----I 103

Query: 205 QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSL 264
            ++ +  +L  L+L  +N    ++    L N T +  L L  +   +S L  + +    L
Sbjct: 104 SALQNLTNLRELYLNEDN----ISDISPLANLTKMYSLNLGANHN-LSDLSPLSN-MTGL 157

Query: 265 KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 324
             L+++  +V  V       +   L  L + + +I   +        S+ SL Y +   +
Sbjct: 158 NYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIEDISPL-----ASLTSLHYFTAYVN 209

Query: 325 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISS 384
            +   +       +  +  L  L I NN +    P  LAN + L  L++  NQ++     
Sbjct: 210 QITDITP------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS---DI 258

Query: 385 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 444
           + +  LT ++ L + +N       +  L N S+L      NN++  E  E   +     L
Sbjct: 259 NAVKDLTKLKMLNVGSNQIS---DISVLNNLSQLNSLFLNNNQLGNEDME--VIGGLTNL 313

Query: 445 KSLSLSSNY 453
            +L LS N+
Sbjct: 314 TTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (326), Expect = 1e-32
 Identities = 71/371 (19%), Positives = 141/371 (38%), Gaps = 48/371 (12%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
             +     L   ++        +     L  + KL + G    +  +  +  L++L  L+
Sbjct: 21  LAEGIRAVLQKASV------TDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLN 72

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N +          +L  L  L I  N+I ++      + L  L+ L L+   I D  
Sbjct: 73  LNGNQITDIS---PLSNLVKLTNLYIGTNKITDIS---ALQNLTNLRELYLNEDNISD-- 124

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
             +  + +   + +L+L +N+  + L+    L N T L YLT+  +   +  +  I +  
Sbjct: 125 --ISPLANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTV--TESKVKDVTPIAN-L 176

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321
             L +LS++  ++  +          SL +      +I   T        +M  L  L +
Sbjct: 177 TDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNSLKI 228

Query: 322 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 381
             + + T+ S      L  L+ L  L I  N +   +   + + T L++L+V  NQ++  
Sbjct: 229 GNNKI-TDLS-----PLANLSQLTWLEIGTNQIS-DIN-AVKDLTKLKMLNVGSNQIS-- 278

Query: 382 ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK 441
              S L +L+ +  L L+NN       +E +   + L       N I         L   
Sbjct: 279 -DISVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP----LASL 332

Query: 442 FQLKSLSLSSN 452
            ++ S   ++ 
Sbjct: 333 SKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  128 bits (323), Expect = 3e-32
 Identities = 71/350 (20%), Positives = 139/350 (39%), Gaps = 44/350 (12%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
               + +  L ++   +        ++ +  L+ L+ L+L GN    + +S ++ L  LT
Sbjct: 40  QEELESITKLVVAGEKV------ASIQGIEYLTNLEYLNLNGN--QITDISPLSNLVKLT 91

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
           +L++  N +    D     +L+NL EL +N++ I ++        L K+ SL+L      
Sbjct: 92  NLYIGTNKIT---DISALQNLTNLRELYLNEDNISDIS---PLANLTKMYSLNLGANHNL 145

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 258
                L  + +   LN L +  +     +     + N T+L  L+L+ +   I  +  + 
Sbjct: 146 ---SDLSPLSNMTGLNYLTVTESK----VKDVTPIANLTDLYSLSLNYN--QIEDISPLA 196

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 318
           S   SL   +    ++  +       +   L  L +   +I   +        ++  L +
Sbjct: 197 S-LTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITDLSPL-----ANLSQLTW 247

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 378
           L +  + +    S I    +  L  L+ L + +N +       L N + L  L ++ NQL
Sbjct: 248 LEIGTNQI----SDI--NAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQL 299

Query: 379 TGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 428
                   +  LT++  L LS NH      + PL + SK+   D  N  I
Sbjct: 300 GNED-MEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 3e-23
 Identities = 56/301 (18%), Positives = 114/301 (37%), Gaps = 60/301 (19%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 L  L L+ +NI        +  L+ L+K+  L+L  N  N S LS ++ ++ L 
Sbjct: 106 LQNLTNLRELYLNEDNI------SDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLN 158

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            L ++ + ++         +L++L  L +N N+I+++        L  L         I 
Sbjct: 159 YLTVTESKVKDVT---PIANLTDLYSLSLNYNQIEDIS---PLASLTSLHYFTAYVNQIT 212

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 258
           D    +  + +   LN+L + +N     +T    L N + L +L +  +   IS + ++ 
Sbjct: 213 D----ITPVANMTRLNSLKIGNNK----ITDLSPLANLSQLTWLEIGTN--QISDINAVK 262

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKY 318
                LK L++   +++ +           L +L                       L  
Sbjct: 263 D-LTKLKMLNVGSNQISDI---------SVLNNL---------------------SQLNS 291

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQL 378
           L L+ + LG     ++      L +L  L++  N +    P  LA+ + +   D +   +
Sbjct: 292 LFLNNNQLGNEDMEVIGG----LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 379 T 379
            
Sbjct: 346 K 346

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (349), Expect = 3e-35
 Identities = 62/323 (19%), Positives = 121/323 (37%), Gaps = 18/323 (5%)

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
           L+ +     +++   +    F     +    + +   N+  +  +P  + D    +   N
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 548 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
           ++   ++     +F     +Q L +  N +   +P H+      L  L L  N L   + 
Sbjct: 76  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLP 133

Query: 608 SRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
             IF     L  L +  N+       +    +SL+ L L++N L+  +   L  +  L H
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFH 190

Query: 667 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 726
             +  N L            +++ LD S N+I+         + +  + L  N L     
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLT---D 240

Query: 727 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 786
                N   LV +DLSYN L   +      + +L  L +++N L   + +    +  L++
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

Query: 787 LDLSDNNLHGLIPSCFDNTTLHE 809
           LDLS N+L  +  +      L  
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLEN 322

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 2e-34
 Identities = 81/391 (20%), Positives = 147/391 (37%), Gaps = 62/391 (15%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74

Query: 596 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 75  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 713
                N   L  + M  N+LE  I  + F    SLQ L +S N ++    S     S+  
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLI--PSLFH 190

Query: 714 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 773
            ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  +
Sbjct: 191 ANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-D 240

Query: 774 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 829
               L     L  +DLS N L  ++   F        L+ S N   + +   +       
Sbjct: 241 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------ 293

Query: 830 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 889
                                       +  L  LDLS N L+ H+        R++ L 
Sbjct: 294 ----------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324

Query: 890 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           L HN++  T+    S    +++L LS+N   
Sbjct: 325 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 5e-30
 Identities = 74/462 (16%), Positives = 148/462 (32%), Gaps = 100/462 (21%)

Query: 334 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 394 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 453
           E L L++      +          ++      N I   +   H       L  L L  N 
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIR-YL-PPHVFQNVPLLTVLVLERND 128

Query: 454 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 513
                                     +   P  +  N  KL  L + N++L         
Sbjct: 129 --------------------------LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 573
           +   L+ L +S+N    H+ +    ++PSL + N+S N L     S+    I ++ LD S
Sbjct: 163 ATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLL-----STLAIPIAVEELDAS 213

Query: 574 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 633
           +N +   +   +    V L  L L +N+L     + + +   L  + L  N     +   
Sbjct: 214 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 267

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
             K   L+ LY++NN L                           + +    + +L++LD+
Sbjct: 268 FVKMQRLERLYISNNRLVA-------------------------LNLYGQPIPTLKVLDL 302

Query: 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
           S N++   +                                 L  L L +N +  ++   
Sbjct: 303 SHNHLL-HVER------------------------NQPQFDRLENLYLDHNSIV-TLK-- 334

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           +     L +L L+HN+ +      L     +    + D + H
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 8e-30
 Identities = 67/359 (18%), Positives = 129/359 (35%), Gaps = 50/359 (13%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           L A+L   F+Q+E L+L+   I            +    ++KL +  N      +  +  
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNA-----IRYLPP 110

Query: 132 ---ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
                +  LT L L  N L  S+    F +   L  L +++N ++ +E    ++    L+
Sbjct: 111 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQ 168

Query: 189 SLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
           +L LS       N+L    +   PSL   ++  N  +        L     +E L    S
Sbjct: 169 NLQLS------SNRLTHVDLSLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--S 213

Query: 248 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
              I++++    +   L  L +     N +       ++  L  +D+ +  +      + 
Sbjct: 214 HNSINVVRG--PVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMY 265

Query: 308 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
                M  L+ L +S      N    L+    P+  L+ L + +N L   +         
Sbjct: 266 HPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           L  L +  N +  ++  S    L     L LS+N +          N ++  + DA  +
Sbjct: 320 LENLYLDHNSIV-TLKLSTHHTLK---NLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (303), Expect = 2e-29
 Identities = 62/319 (19%), Positives = 116/319 (36%), Gaps = 27/319 (8%)

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 689
           I  +L        ++++              L   + +    + +             ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 690 ILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           +L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+ 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 749 SIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TT 806
           S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +   
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFH 190

Query: 807 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 865
            + SYN  S+            S         I  +            +G V   L  L 
Sbjct: 191 ANVSYNLLSTLAIPIAVEELDASH------NSINVV------------RGPVNVELTILK 232

Query: 866 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
           L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   +  
Sbjct: 233 LQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNL 289

Query: 926 QLVDLNTLAIFIVAYNNLS 944
               + TL +  +++N+L 
Sbjct: 290 YGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 8e-25
 Identities = 71/413 (17%), Positives = 144/413 (34%), Gaps = 82/413 (19%)

Query: 263 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 322
              ++ +   +   V  G       + + +  + + +         + +S   ++ L+L+
Sbjct: 22  VFYDVHID-MQTQDVYFGFEDITLNNQKIVTFKNSTM---RKLPAALLDSFRQVELLNLN 77

Query: 323 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
              +      I          +Q+LY+  N +R   P    N   L +L +  N L+ S+
Sbjct: 78  DLQI----EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SL 132

Query: 383 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
                 +   +  L +SNN+      +E                          +     
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE---RIED------------------------DTFQATT 165

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 502
            L++L LSSN                     L+H+  +   P+        L    +  +
Sbjct: 166 SLQNLQLSSN--------------------RLTHV-DLSLIPS--------LFHANVSYN 196

Query: 503 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG 562
            L+      +     +  LD S+N+    +    G +   L    +  N L  +  +   
Sbjct: 197 LLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL--TDTAWLL 245

Query: 563 NVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLE 622
           N   L  +DLS N+L  +I  H  +    LE L +SNN L   +      +  L+ L L 
Sbjct: 246 NYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303

Query: 623 GNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
            NH +  + ++  +   L+ LYL++N++   +   L     L+++ +  N  +
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  103 bits (259), Expect = 1e-23
 Identities = 61/315 (19%), Positives = 111/315 (35%), Gaps = 45/315 (14%)

Query: 109 RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 168
            L+  K +  + +       + +     +  L+L+   ++  ID   F     +++L + 
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 101

Query: 169 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFT 224
            N I  +      + +  L  L L        N L     G F   P L TL + +NN  
Sbjct: 102 FNAIRYLPPHVF-QNVPLLTVLVLE------RNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154

Query: 225 ATLTTTQELHNFTNLEYLTLDD---SSLHISLLQSIGSIF------------PSLKNLSM 269
                T      T+L+ L L     + + +SL+ S+                 +++ L  
Sbjct: 155 RIEDDT--FQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212

Query: 270 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 329
           S   +N V           L  L ++   +            + P L  + LS + L   
Sbjct: 213 SHNSINVVRGPV----NVELTILKLQHNNLTDTAWL-----LNYPGLVEVDLSYNEL--- 260

Query: 330 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 389
             +I+      +  L+ LYI NN L  +L        +L++LD+S N L   +  +    
Sbjct: 261 -EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERN-QPQ 316

Query: 390 LTSIEELRLSNNHFR 404
              +E L L +N   
Sbjct: 317 FDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 4e-23
 Identities = 65/351 (18%), Positives = 134/351 (38%), Gaps = 44/351 (12%)

Query: 107 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 166
           L        + +     +         L++   +   ++ ++  + A   DS   +E L+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 75

Query: 167 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNN 222
           +ND +I+ ++ +  +     ++ L +        N +         + P L  L LE N+
Sbjct: 76  LNDLQIEEID-TYAFAYAHTIQKLYMG------FNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 223 FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 282
            ++        HN   L  L++ +++L   +         SL+NL +S   +  V     
Sbjct: 129 LSSLPRGI--FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL- 184

Query: 283 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 342
                SL H ++ +  +   ++          +++ L  S      NS  ++   +    
Sbjct: 185 ---IPSLFHANVSYNLL---STL-----AIPIAVEELDASH-----NSINVVRGPV--NV 226

Query: 343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
            L  L + +N+L     W L N   L  +D+S+N+L   I   P V +  +E L +SNN 
Sbjct: 227 ELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNR 283

Query: 403 FR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
              + +  +P+     LK+ D  +N +              +L++L L  N
Sbjct: 284 LVALNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFD---RLENLYLDHN 328

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 6e-20
 Identities = 65/339 (19%), Positives = 117/339 (34%), Gaps = 64/339 (18%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA 132
           YL   +F     L  L L  N+++               KL  L +  N        +  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
             +SL +L LS N     +   +   + +L   +++ N +  +           ++ LD 
Sbjct: 163 ATTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYNLLSTLA------IPIAVEELDA 212

Query: 193 SGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 251
           S       N +          L  L L+ NN    LT T  L N+  L  + L  + L  
Sbjct: 213 S------HNSINVVRGPVNVELTILKLQHNN----LTDTAWLLNYPGLVEVDLSYNELE- 261

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
                                     +    F   + LE L +   R+      L + G+
Sbjct: 262 -------------------------KIMYHPFVKMQRLERLYISNNRL----VALNLYGQ 292

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
            +P+LK L LS      N    +++       L+ LY+D+N +  +L   L+   +L+ L
Sbjct: 293 PIPTLKVLDLSH-----NHLLHVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNL 344

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLE 410
            +S N    +   +   ++     +  ++ H +I   LE
Sbjct: 345 TLSHNDWDCNSLRALFRNVARP-AVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 39/201 (19%)

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 804
            I   +        +++     +     +   LN  +++   ++ +  L  +  D+    
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
             L+ +                          +I EI  +                +  L
Sbjct: 72  ELLNLNDL------------------------QIEEIDTYAFAY---------AHTIQKL 98

Query: 865 DLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
            +  N +  ++PP +  N+  +  L L  N+L+      F N   + +L +S N L    
Sbjct: 99  YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157

Query: 924 PRQLVDLNTLAIFIVAYNNLS 944
                   +L    ++ N L+
Sbjct: 158 DDTFQATTSLQNLQLSSNRLT 178

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  139 bits (352), Expect = 5e-35
 Identities = 72/411 (17%), Positives = 143/411 (34%), Gaps = 47/411 (11%)

Query: 535 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 594
           EI           ++ ++L  ++ S   +   ++ LDLS N L+      LA     LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLEL 62

Query: 595 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIK 712
                  +G ++I +  N +     ++      +Q LD+  N I     +       +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 713 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 773 EVPIQLCRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 831
            +   L     L+  DL  N  H G +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 832 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS 891
                 +     +  +++   +  R+++L                           L+  
Sbjct: 288 ------LGHYGAYCCEDLPAPFADRLIAL--------------------KRKEHALLSGQ 321

Query: 892 HNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
            +     +     N      +D    +    +  Q+       I +     
Sbjct: 322 GSETER-LECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKK 370

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (346), Expect = 3e-34
 Identities = 78/483 (16%), Positives = 154/483 (31%), Gaps = 32/483 (6%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
           N          L + S L+  D  NN +         L     +++L  ++N    V+  
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANNNISRVSCS 117

Query: 461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG-PFRLPIHSHKRLR 519
           +        K   L++ K I    +      +++++L L  + +    F     S   L 
Sbjct: 118 RG----QGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 579
            L++  N     +  ++      L   ++S N L   +   F +   + ++ L NNKL  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
            I   L     NLE   L  N        R F  +N R   +          Q+  +C+ 
Sbjct: 228 LIEKALRF-SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV 285

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG----PIPVEFCRLDSLQILDISD 695
               +            +   L  L+         +G     +  E       + +D   
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALK 345

Query: 696 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
                 +        +   +   K  L  +         + L             +    
Sbjct: 346 EQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQI-ELQHAT 403

Query: 755 DGLSQLSHL-NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 813
           +  S L  L  +     E  V  Q  + N ++  D+  +    L         L+   + 
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463

Query: 814 NSS 816
             +
Sbjct: 464 ALA 466

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  130 bits (329), Expect = 4e-32
 Identities = 70/459 (15%), Positives = 146/459 (31%), Gaps = 58/459 (12%)

Query: 357 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFN 414
           ++     N    +I  V+ + L     +S      +++EL LS N         L P   
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPF-- 57

Query: 415 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 474
            +KL++ +  +N +  E  +  SL+    L++L L++N                ++E   
Sbjct: 58  -TKLELLNLSSNVLY-ETLDLESLS---TLRTLDLNNN---------------YVQE--- 94

Query: 475 SHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 534
                        L     +E L+  N++++   R+     +  + + ++NN       +
Sbjct: 95  -------------LLVGPSIETLHAANNNIS---RVSCSRGQGKKNIYLANNKITMLRDL 138

Query: 535 EIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593
           + G     + Y ++ +N +D  +      +   L+ L+L  N +  ++   +      L+
Sbjct: 139 DEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLK 194

Query: 594 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-G 652
            L LS+N L   +     S   + W+ L  N  V  I ++L    +L+   L  N    G
Sbjct: 195 TLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 653 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GSLPSCFYP 708
            +  +    + +Q +             E C +    +                      
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCCEDLPAPFADRLIAL 310

Query: 709 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 768
              +   LS      +  E    N +    +D         I            L     
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370

Query: 769 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
            L+ +V        +L            L  +  + + L
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (308), Expect = 2e-29
 Identities = 66/469 (14%), Positives = 145/469 (30%), Gaps = 32/469 (6%)

Query: 110 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 169
            ++ K   +  +    ++ S      ++  L LS N L   I A +    + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 229
           N +           L  L++LDL+       N  +Q +   PS+ TLH  +NN      +
Sbjct: 68  NVLYETL---DLESLSTLRTLDLN------NNY-VQELLVGPSIETLHAANNNI-----S 112

Query: 230 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 289
                     + + L ++ + +      G     ++ L +   E++ V   +      +L
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 290 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
           EHL++++  I         +      LK L LS      N    +       A +  + +
Sbjct: 172 EHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 350 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 409
            NN L   +   L  + +L   D+  N                ++ +           + 
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
           E     +          ++     +      + +   LS   +  + +   +   +Q   
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE--NQARQ 338

Query: 470 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 529
           +E +    +      + +         L     +L         +H  L          Q
Sbjct: 339 REIDALKEQ-YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-Q 396

Query: 530 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
             +     +  P  +   I     +  +         ++  D+  +K T
Sbjct: 397 IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  118 bits (296), Expect = 7e-28
 Identities = 62/406 (15%), Positives = 134/406 (33%), Gaps = 58/406 (14%)

Query: 591 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 650
             +   ++++SLK  + S   S  N++ L L GN         L+  + L+ L L++N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 651 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS 710
              +   L +L  L+ + +  N+++     E     S++ L  ++NNIS    S      
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGK- 122

Query: 711 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNN 769
            K ++L+ N +   L++      S +  LDL  N ++  +  +       L HLNL +N 
Sbjct: 123 -KNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180

Query: 770 LEG---------------------EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 808
           +                        +  +      +  + L +N L  +  +   +  L 
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE 240

Query: 809 E------------------SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 850
                                    +  K      +    +      +     +  +++ 
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 851 YAYQGRVLSL----LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 906
             +  R+++L     A L    ++    +  +  N  R + ++         I       
Sbjct: 301 APFADRLIALKRKEHALLSGQGSET-ERLECERENQARQREIDALKEQYRTVIDQVTLRK 359

Query: 907 RHIESLDLSYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 949
           +   +L+     L  ++    R   +L+      V    L     E
Sbjct: 360 QAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  117 bits (294), Expect = 1e-27
 Identities = 55/360 (15%), Positives = 116/360 (32%), Gaps = 57/360 (15%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           EI Q+ ++    K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGNR---YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 804
            +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 805 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 863
              L+  YN                         I ++                 + L  
Sbjct: 171 LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 983
            R         +  VA   +   +     +  T     + G      LP P    L  + 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  111 bits (279), Expect = 1e-25
 Identities = 69/399 (17%), Positives = 128/399 (32%), Gaps = 51/399 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN------------ 121
           ++A+   PF +LE L+LS N +           L  LS L+ LDL  N            
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNYVQELLVGPSIE 102

Query: 122 ---LCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 177
                NN+I   S +R     +++L++N +   +   +    S ++ LD+  NEID V  
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 178 SRGYRGLRKLKSLDLSGVGIRD----------------GNKLLQ---SMGSFPSLNTLHL 218
           +        L+ L+L    I D                 NKL        S   +  + L
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 219 ESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVL 278
            +N         + L    NLE+  L  +  H   L+   S    ++ ++    +    L
Sbjct: 222 RNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA---KQTVKKL 275

Query: 279 SGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL 338
           +GQ                             + + +LK    +  +   + +  L+   
Sbjct: 276 TGQNEEECTVPTLGHYGAYCC---EDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 339 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 398
              A  +E+       R  +        +   L+     L   +S+    H      L+ 
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

Query: 399 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 437
           +     +  + E       L+    +  E+  E     +
Sbjct: 393 AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (267), Expect = 3e-24
 Identities = 75/543 (13%), Positives = 159/543 (29%), Gaps = 99/543 (18%)

Query: 156 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 211
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 212 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
            L  L+L SN     L  T +L + + L  L L+++ +                      
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYV---------------------- 92

Query: 272 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 331
                    Q      S+E L      I+      ++        K + L+ + +    +
Sbjct: 93  ---------QELLVGPSIETLHAANNNIS------RVSCSRGQGKKNIYLANNKI----T 133

Query: 332 RILDQGLCPLAHLQELYIDNNDLRG-SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL 390
            + D      + +Q L +  N++   +     A++ +L  L++ +N +         V  
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVF 190

Query: 391 TSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSL 449
             ++ L LS+N    +    +     + +     +NN++               L+   L
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSA---AGVTWISLRNNKLVLIEKALRFSQ---NLEHFDL 244

Query: 450 SSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF- 508
             N     T   F      ++      +K +           T   +     + L  PF 
Sbjct: 245 RGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 509 -RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 567
            RL     K    L    +  +                           +     N    
Sbjct: 305 DRLIALKRKEHALLSGQGSETE--------------------------RLECERENQARQ 338

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 627
           + +D    +    + D + +       L     +L   + +   +   L   L +    +
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

Query: 628 GEIPQSLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
            E+  +  + S L+ L  +        + +       ++   M ++     +  E  RL 
Sbjct: 398 -ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET-QLAEENARLK 455

Query: 687 SLQ 689
            L 
Sbjct: 456 KLN 458

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.0 bits (174), Expect = 7e-13
 Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 47/200 (23%)

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 804
           +I +     ++     +  ++L+  +         ++ LDLS N L  +  +        
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
             L+ S N                         + E  +  +           LS L  L
Sbjct: 61  ELLNLSSN------------------------VLYETLDLES-----------LSTLRTL 85

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
           DL+ N +      ++     I+TL+ ++NN++          ++   + L+ NK++    
Sbjct: 86  DLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRD 137

Query: 925 RQLVDLNTLAIFIVAYNNLS 944
                 + +    +  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (341), Expect = 7e-35
 Identities = 53/393 (13%), Positives = 104/393 (26%), Gaps = 81/393 (20%)

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
                      +                   D +         +       N +  + + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----NNPQIETRTG 65

Query: 600 NSLKGHIFS-RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 658
            +LK         +      L L       + P    + S L+ + ++   L  ++P  +
Sbjct: 66  RALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 659 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 718
               GL+ + + +N L   +P     L+ L+ L I        LP               
Sbjct: 124 QQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG----- 177

Query: 719 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 778
                           +L +L L +  +  S+P  I  L  L  L + ++ L   +   +
Sbjct: 178 ----------EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI 225

Query: 779 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 838
             L +L+ LDL         P  F                                    
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGG---------------------------------- 251

Query: 839 LEIFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 897
                               + L  L L  C+ L+  +P  I  LT+++ L+L       
Sbjct: 252 -------------------RAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 898 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 930
            +P   + L     + +  +  +     + V  
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (309), Expect = 1e-30
 Identities = 56/329 (17%), Positives = 104/329 (31%), Gaps = 27/329 (8%)

Query: 512 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 571
            H       L    +         +          + +             N    Q   
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRW----HSAWRQANSNNPQIET 62

Query: 572 LSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 630
            +   L     D L          L L +  L      + F L +L+ + ++    + E+
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 631 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI---------VMPKNHLEGPIPVE 681
           P ++ + + L+ L L  N L   +P  + +L  L+ +          +P+         E
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 682 FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 740
              L +LQ L +    I  SLP+    L ++K + +  + L          +   L  LD
Sbjct: 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELD 235

Query: 741 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS 800
           L       + P    G + L  L L   +    +P+ + RL QL+ LDL        +PS
Sbjct: 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295

Query: 801 CFDN----TTLHESYNNNSSPDKPFKTSF 825
                     +    +  +  D+    + 
Sbjct: 296 LIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (286), Expect = 1e-27
 Identities = 65/382 (17%), Positives = 108/382 (28%), Gaps = 85/382 (22%)

Query: 584 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 643
           H        E L    ++        +   +          H       S    ++ +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIE 61

Query: 644 YLNNNNLSGKIPRWLGNLK--GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 701
                 L       L +    G   + +    L    P +  RL  LQ + I    +   
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 702 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 761
           LP                              + L TL L+ N L  ++P  I  L++L 
Sbjct: 119 LPDTM------------------------QQFAGLETLTLARNPLR-ALPASIASLNRLR 153

Query: 762 HLNLAHNNLEGEVPIQLCR---------LNQLQLLDLSDNNLHGLIPSCFDN----TTLH 808
            L++       E+P  L           L  LQ L L    +  L P+   N     +L 
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLK 212

Query: 809 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
              +  S+          +I                              L  L  LDL 
Sbjct: 213 IRNSPLSALGP-------AIHH----------------------------LPKLEELDLR 237

Query: 868 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 927
               + + PP  G    ++ L L   +   T+PL    L  +E LDL       ++P  +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 928 VDLNTLAIFIVAYNNLSGKIPE 949
             L    I +V   +L  ++ +
Sbjct: 298 AQLPANCIILV-PPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  111 bits (279), Expect = 1e-26
 Identities = 55/362 (15%), Positives = 102/362 (28%), Gaps = 59/362 (16%)

Query: 356 GSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELR-LSNNHFRIPVSLEPLF 413
           GS      +++    L            S+ L      + + +   N       S     
Sbjct: 2   GSSHHHHHHSSGRENLYFQ--------GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA 53

Query: 414 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 473
           N +  +I       +    +     T      +L L S                      
Sbjct: 54  NSNNPQIETRTGRALKATADLLEDATQP-GRVALELRSV--------------------P 92

Query: 474 LSHI-KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQG 530
           L                  + L+ + +    L     LP  +     L  L ++ N  + 
Sbjct: 93  LPQFPDQAFRL--------SHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPLR- 140

Query: 531 HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF---------LQFLDLSNNKLTGEI 581
            +P  I   L  L   +I        +P    +            LQ L L    +   +
Sbjct: 141 ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 641
           P  +A    NL+ L + N+ L   +   I  L  L  L L G   +   P      + LK
Sbjct: 199 PASIANL-QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 642 GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 701
            L L + +    +P  +  L  L+ + +        +P    +L +  I+ +  +  +  
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316

Query: 702 LP 703
             
Sbjct: 317 DQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  106 bits (268), Expect = 3e-25
 Identities = 48/328 (14%), Positives = 89/328 (27%), Gaps = 62/328 (18%)

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
           +G         S  + LY   +         L   +   +    + H            +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSN 56

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLHGQLKE--GTFFNCSSLVTLDL 741
           + QI   +   +  +        +        L        L +     F  S L  + +
Sbjct: 57  NPQIETRTGRALK-ATADLLEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTI 111

Query: 742 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 801
               L   +PD +   + L  L LA N L   +P  +  LN+L+ L +        +P  
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 802 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861
             +T     +                                              L  L
Sbjct: 170 LASTDASGEHQG--------------------------------------------LVNL 185

Query: 862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
             L L    +   +P  I NL  +++L + ++ L+  +     +L  +E LDL       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALR 243

Query: 922 KIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
             P        L   I+   +    +P 
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  103 bits (260), Expect = 3e-24
 Identities = 58/345 (16%), Positives = 111/345 (32%), Gaps = 38/345 (11%)

Query: 315 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS 374
             + L   GST         D     L+  Q  Y  + +      W  AN+ + +I   +
Sbjct: 13  GRENLYFQGST---ALRPYHDV----LSQWQRHYNADRNRW-HSAWRQANSNNPQIETRT 64

Query: 375 FNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEIN 433
              L  +              L L +    + P   +  F  S L+        +    +
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFP---DQAFRLSHLQHMTIDAAGLMELPD 121

Query: 434 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 493
                     L++L+L+ N       P  +   + L+E  +     + E P  L   +  
Sbjct: 122 TMQQFA---GLETLTLARN--PLRALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176

Query: 494 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
            E   LVN                L+ L +     +  +P  I + L +L    I  + L
Sbjct: 177 GEHQGLVN----------------LQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL 218

Query: 554 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 613
             ++  +  ++  L+ LDL         P         L+ L L + S    +   I  L
Sbjct: 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 658
             L  L L G   +  +P  +++  +   + +   +L  ++ +  
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILV-PPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (252), Expect = 4e-23
 Identities = 50/346 (14%), Positives = 111/346 (32%), Gaps = 53/346 (15%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
            +  + LY   +         L+        D +        S+    +  + +    + 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH-----SAWRQANSNNPQIETRTG 65

Query: 401 NHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
              +     LE           + ++  +    +++  L+    L+ +++ +        
Sbjct: 66  RALKATADLLEDA-TQPGRVALELRSVPLPQFPDQAFRLS---HLQHMTIDAAG------ 115

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKR 517
                               + E P+  ++    LE L L  + L     LP  I S  R
Sbjct: 116 --------------------LMELPDT-MQQFAGLETLTLARNPLR---ALPASIASLNR 151

Query: 518 LRFLDVSNNNFQGHIPVEIGDI--------LPSLVYFNISMNALDGSIPSSFGNVIFLQF 569
           LR L +        +P  +           L +L    +    +  S+P+S  N+  L+ 
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           L + N+ L+  +   +      LE L L   +   +          L+ L+L+    +  
Sbjct: 211 LKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
           +P  + + + L+ L L       ++P  +  L     I++P +   
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 3e-19
 Identities = 56/386 (14%), Positives = 104/386 (26%), Gaps = 70/386 (18%)

Query: 231 QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLE 290
              H+ +  E L    S+        +   +    N   +                 +  
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQ-WQRHYNADRNRWH--------SAWRQANSN 56

Query: 291 HLDMRFARIALNTSFLQIIGE-SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
           +  +         +   ++ + + P    L L    L              L+HLQ + I
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTI 111

Query: 350 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 409
           D   L   LP  +     L  L ++ N L  ++ +S +  L  + EL +           
Sbjct: 112 DAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPAS-IASLNRLRELSIRAC-------- 160

Query: 410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
                  +L         +    + S        L+SL L                    
Sbjct: 161 ------PELTELP---EPL-ASTDASGEHQGLVNLQSLRLEWT----------------- 193

Query: 470 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNN 527
                     I   P   + N   L+ L + N  L+    L   IH   +L  LD+    
Sbjct: 194 ---------GIRSLPAS-IANLQNLKSLKIRNSPLSA---LGPAIHHLPKLEELDLRGCT 240

Query: 528 FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM 587
              + P   G     L    +   +   ++P     +  L+ LDL        +P  +A 
Sbjct: 241 ALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 588 CCVNLEFLSLSNNSLKGHIFSRIFSL 613
                  + +  +        R  + 
Sbjct: 300 -LPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.5 bits (220), Expect = 6e-19
 Identities = 54/317 (17%), Positives = 101/317 (31%), Gaps = 43/317 (13%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS-SVARLS 135
                  Q +    +  N           R +  +  +     G     +      A   
Sbjct: 27  PYHDVLSQWQRHYNADRNR-----WHSAWRQANSNNPQIETRTGRALKATADLLEDATQP 81

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV 195
              +L L    L       +   LS+L+ + I+   +  +  +        L++L L+  
Sbjct: 82  GRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLMELPDTMQQ--FAGLETLTLAR- 136

Query: 196 GIRDGNKLL---QSMGSFPSLNTLHLESNNFTATL-------TTTQELHNFTNLEYLTLD 245
                N L     S+ S   L  L + +      L         + E     NL+ L L+
Sbjct: 137 -----NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 246 DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSF 305
            + +  SL  SI ++  +LK+L +    ++ +       H   LE LD+R        + 
Sbjct: 192 WTGI-RSLPASIANL-QNLKSLKIRNSPLSALGPAIH--HLPKLEELDLR------GCTA 241

Query: 306 LQIIGES---MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL 362
           L+           LK L L       ++   L   +  L  L++L +        LP  +
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDC----SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297

Query: 363 ANTTSLRILDVSFNQLT 379
           A   +  I+ V  +   
Sbjct: 298 AQLPANCIILVPPHLQA 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  132 bits (335), Expect = 4e-34
 Identities = 63/300 (21%), Positives = 118/300 (39%), Gaps = 19/300 (6%)

Query: 535 EIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 594
           EI           ++ ++L  ++ S   +   ++ LDLS N L+ +I          LE 
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLEL 62

Query: 595 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           L+LS+N L       + SL  LR L L  N+      Q L    S++ L+  NNN+S ++
Sbjct: 63  LNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RV 114

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG-SLPSCFYPL-SIK 712
                  +G ++I +  N +     ++      +Q LD+  N I   +         +++
Sbjct: 115 S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 713 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
            ++L  N ++  +K       + L TLDLS N L   +       + ++ ++L +N L  
Sbjct: 173 HLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV- 227

Query: 773 EVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 831
            +   L     L+  DL  N  H   +   F      ++    +      +     + P 
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  119 bits (301), Expect = 1e-29
 Identities = 56/365 (15%), Positives = 116/365 (31%), Gaps = 57/365 (15%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           EI Q+ +     K   + +++L   +     +   ++ + +  N L      +      L
Sbjct: 4   EIKQNGN---RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           ++L++S N +           +++ + L+ N +             S+ TL  + N ++ 
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS- 112

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN---- 804
            +           ++ LA+N +     +     +++Q LDL  N +  +  +        
Sbjct: 113 RVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 805 -TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 863
              L+  YN                         I ++                 + L  
Sbjct: 171 LEHLNLQYN------------------------FIYDVKGQVV-----------FAKLKT 195

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           LDLS NKL   + P+  +   +  ++L +N L   I       +++E  DL  N      
Sbjct: 196 LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMS 983
            R         +  VA   +  K+     +  T     + G      LP P    L  + 
Sbjct: 254 LRDFF-SKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALG 311

Query: 984 EASTS 988
                
Sbjct: 312 HHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 5e-27
 Identities = 51/293 (17%), Positives = 102/293 (34%), Gaps = 28/293 (9%)

Query: 110 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 169
            ++ K   +  +    ++ S      ++  L LS N L   I A +    + LE L+++ 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 229
           N +           L  L++LDL+       N  +Q +   PS+ TLH  +NN      +
Sbjct: 68  NVLYETL---DLESLSTLRTLDLN------NNY-VQELLVGPSIETLHAANNNI-----S 112

Query: 230 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 289
                     + + L ++ + +      G     ++ L +   E++ V   +      +L
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 290 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
           EHL++++  I         +      LK L LS      N    +       A +  + +
Sbjct: 172 EHLNLQYNFI---YDVKGQV--VFAKLKTLDLSS-----NKLAFMGPEFQSAAGVTWISL 221

Query: 350 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
            NN L   +   L  + +L   D+  N                ++ +      
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 5e-27
 Identities = 57/351 (16%), Positives = 119/351 (33%), Gaps = 72/351 (20%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
               +   + ++ L+ +L     +  +++ LD+S N L+  IS++ L   T +E L LS+
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67

Query: 401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
           N          L + S L+  D  NN +         L     +++L  ++N        
Sbjct: 68  NVLY---ETLDLESLSTLRTLDLNNNYVQ-------ELLVGPSIETLHAANN-------- 109

Query: 461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 520
                        +S +                                      +  + 
Sbjct: 110 ------------NISRV---------------------------------SCSRGQGKKN 124

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTG 579
           + ++NN       ++ G     + Y ++ +N +D  +      +   L+ L+L  N +  
Sbjct: 125 IYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
           ++   +      L+ L LS+N L   +     S   + W+ L  N  V  I ++L    +
Sbjct: 183 DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238

Query: 640 LKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 689
           L+   L  N    G +  +    + +Q +             E C + +L 
Sbjct: 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 3e-26
 Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 49/328 (14%)

Query: 610 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 669
             +    +   +  +     +        ++K L L+ N LS      L     L+ + +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 670 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 729
             N L   +      L +L+ LD+++N +   L       SI+ +H + N +  ++    
Sbjct: 66  SSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGP---SIETLHAANNNIS-RVSCSR 118

Query: 730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLD 788
                    + L+ N +           S++ +L+L  N ++           + L+ L+
Sbjct: 119 G---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 789 LSDNNLHGLIPSCFDN--TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT 846
           L  N ++ +          TL  S N  +     F++                       
Sbjct: 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS----------------------- 212

Query: 847 KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSN 905
                       + +  + L  NKLV  I   +     ++  +L  N    GT+   FS 
Sbjct: 213 -----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 906 LRHIESLDLSYNKLSGKIPRQLVDLNTL 933
            + ++++     K       +   + TL
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  107 bits (269), Expect = 2e-25
 Identities = 61/404 (15%), Positives = 113/404 (27%), Gaps = 94/404 (23%)

Query: 364 NTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDA 423
           N    +I  V+ + L     +S      +++EL LS N       +              
Sbjct: 8   NGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS---QISA------------ 51

Query: 424 KNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEF 483
                     +    T   +L+ L+LSSN                        +    + 
Sbjct: 52  ---------ADLAPFT---KLELLNLSSN-----------------------VLYETLDL 76

Query: 484 PNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 543
                E+ + L  L L N+ +       +     +  L  +NNN    +           
Sbjct: 77  -----ESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR---GQGK 122

Query: 544 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 603
               ++ N +        G    +Q+LDL  N++       LA     LE L+L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 604 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 663
             +  ++     L+ L L  N     +       + +  + L NN L             
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL----------- 228

Query: 664 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 723
                         I        +L+  D+  N         F+  + +   ++K  +  
Sbjct: 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK- 273

Query: 724 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 767
           +L       C+                  + D L  L H +  H
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 54/307 (17%), Positives = 111/307 (36%), Gaps = 42/307 (13%)

Query: 156 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ----SMGSFP 211
             + +  +   + D+ +     S   +    +K LDLS      GN L Q     +  F 
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLS------GNPLSQISAADLAPFT 58

Query: 212 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSI------------- 257
            L  L+L SN     L  T +L + + L  L L+++ +  + +  SI             
Sbjct: 59  KLELLNLSSNV----LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114

Query: 258 -GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 316
             S     KN+ ++  ++   L          +++LD++   I    +F ++   S  +L
Sbjct: 115 SCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEID-TVNFAELAA-SSDTL 171

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
           ++L+L       N    +   +   A L+ L + +N L   +     +   +  + +  N
Sbjct: 172 EHLNLQY-----NFIYDVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNN 224

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESH 436
           +L   I  + L    ++E   L  N F      +    + +++    +  +     NE  
Sbjct: 225 KLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 437 SLTPKFQ 443
              P   
Sbjct: 283 CTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.7 bits (218), Expect = 7e-19
 Identities = 57/288 (19%), Positives = 107/288 (37%), Gaps = 38/288 (13%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN------------ 121
           ++A+   PF +LE L+LS N +           L  LS L+ LDL  N            
Sbjct: 49  ISAADLAPFTKLELLNLSSNVL------YETLDLESLSTLRTLDLNNNYVQELLVGPSIE 102

Query: 122 ---LCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEV 177
                NN+I   S +R     +++L++N +   +   +    S ++ LD+  NEID V  
Sbjct: 103 TLHAANNNISRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 178 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 237
           +        L+ L+L    I D    ++    F  L TL L SN          E  +  
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD----VKGQVVFAKLKTLDLSSNKLA---FMGPEFQSAA 214

Query: 238 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFA 297
            + +++L ++ L   + +++     +L++  + G   +       F   + ++ +  +  
Sbjct: 215 GVTWISLRNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ-- 270

Query: 298 RIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 345
                   L    E   ++  L   G+    +        L  L H  
Sbjct: 271 ----TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 49/278 (17%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 234 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 293
            N    +   + DSSL    L S+     ++K L +SG  ++ + +      F  LE L+
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAAD-LAPFTKLELLN 64

Query: 294 MRFARIALNTSFLQIIGESMPSLKYLSLSG---STLGTNSS---------RILDQGLCPL 341
           +    +           ES+ +L+ L L+      L    S          I        
Sbjct: 65  LSSNVLYETLDL-----ESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
              + +Y+ NN +           + ++ LD+  N++     +       ++E L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
                  ++     +KLK  D  +N++     E  S      +  +SL +N    V   K
Sbjct: 180 FIY---DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA---GVTWISLRNN--KLVLIEK 231

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 499
            L     L+  +L                N +++ +  
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%)

Query: 875 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 934
           I     N  R +   ++ ++L   +     +  +++ LDLS N LS      L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 935 IFIVAYNNLS 944
           +  ++ N L 
Sbjct: 62  LLNLSSNVLY 71

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (337), Expect = 3e-33
 Identities = 100/581 (17%), Positives = 177/581 (30%), Gaps = 138/581 (23%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
              LQE    +++L   +P    N  S      ++++   +           +   RL +
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRD 67

Query: 401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPK-FQLKSLSLSSNYGDSVTF 459
              R            +    +  N  +        SL      L+SL  S N       
Sbjct: 68  CLDR------------QAHELELNNLGL-------SSLPELPPHLESLVASCN------- 101

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 519
                               + E P         L+ L + N++L     LP      L 
Sbjct: 102 -------------------SLTELPELP----QSLKSLLVDNNNLKALSDLP----PLLE 134

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 579
           +L VSNN  +  +P E+ +    L   ++  N+L   +P    +   L+F+   NN+L  
Sbjct: 135 YLGVSNNQLE-KLP-ELQN-SSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE- 186

Query: 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
           E+P+        L  +   NNSLK  +        +L  ++   N    E    L     
Sbjct: 187 ELPELQN--LPFLTAIYADNNSLK-KLPD---LPLSLESIVAGNNIL--EELPELQNLPF 238

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
           L  +Y +NN L   +P    +L+ L    +  N+L   +P     L  L + +   + +S
Sbjct: 239 LTTIYADNNLLK-TLPDLPPSLEALN---VRDNYLTD-LPELPQSLTFLDVSENIFSGLS 293

Query: 700 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759
              P+      +  ++ S N +             SL  L++S N L   +P       +
Sbjct: 294 ELPPN------LYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLI-ELPALP---PR 338

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 819
           L  L  + N+L  EVP        L+ L +  N L            L  + +    P+ 
Sbjct: 339 LERLIASFNHLA-EVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394

Query: 820 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 879
           P                                        L  L +  N L    P   
Sbjct: 395 PQN--------------------------------------LKQLHVETNPLR-EFPDIP 415

Query: 880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
            ++     L ++   +             +E     ++   
Sbjct: 416 ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (318), Expect = 8e-31
 Identities = 91/496 (18%), Positives = 164/496 (33%), Gaps = 101/496 (20%)

Query: 301 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 360
              +  ++          L L+   L +              HL+ L    N L   LP 
Sbjct: 58  REMAVSRLRDCLDRQAHELELNNLGLSSLPELP--------PHLESLVASCNSLT-ELPE 108

Query: 361 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 420
              +  SL + + +   L+             +E L +SNN       L  L N S LKI
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE---KLPELQNSSFLKI 157

Query: 421 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 480
            D  NN +  ++ +         L+ ++  +N                    +L  +  +
Sbjct: 158 IDVDNNSLK-KLPDLPP-----SLEFIAAGNN--------------------QLEELPEL 191

Query: 481 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 540
              P         L  +Y  N+SL     LP+     L  +   NN        E+ + L
Sbjct: 192 QNLPF--------LTAIYADNNSLKKLPDLPLS----LESIVAGNNIL--EELPELQN-L 236

Query: 541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 600
           P L       N L  ++P    +   L+ L++ +N LT ++P+       +L FL +S N
Sbjct: 237 PFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQ----SLTFLDVSEN 287

Query: 601 SLKGHIFSRIFSL-RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
                  S +  L  NL +L    N     +        SL+ L ++NN L  ++P    
Sbjct: 288 IF-----SGLSELPPNLYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPP 337

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
            L   + ++   NHL   +P       +L+ L +  N +    P     +   +++    
Sbjct: 338 RL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLA 389

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 779
            +             +L  L +  N L    PD       +  L +    +         
Sbjct: 390 EV--------PELPQNLKQLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHE 437

Query: 780 RLNQLQLLDLSDNNLH 795
             ++L+      ++ H
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  119 bits (301), Expect = 1e-28
 Identities = 116/559 (20%), Positives = 199/559 (35%), Gaps = 115/559 (20%)

Query: 388 VHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKS 446
           V  T ++E    +++   +PV      N      +    +E        +    +  +  
Sbjct: 8   VSNTFLQEPLRHSSNLTEMPVEA---ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 447 LSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAG 506
           L    +               +  E EL+++  +   P         LE L    +SL  
Sbjct: 65  LRDCLD--------------RQAHELELNNLG-LSSLPELP----PHLESLVASCNSLT- 104

Query: 507 PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 566
              LP    + L+ L V NNN +      + D+ P L Y  +S N L+  +P    N  F
Sbjct: 105 --ELP-ELPQSLKSLLVDNNNLK-----ALSDLPPLLEYLGVSNNQLE-KLPE-LQNSSF 154

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
           L+ +D+ NN L  ++PD       +LEF++  NN L+      + +L  L  +  + N  
Sbjct: 155 LKIIDVDNNSLK-KLPDLPP----SLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSL 207

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
             ++P       SL+ +   NN L       L NL  L  I    N L+  +P       
Sbjct: 208 K-KLPDLPL---SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPDLPP--- 257

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           SL+ L++ DN ++  LP    P S+  + +S+N+    L E       +L  L+ S N +
Sbjct: 258 SLEALNVRDNYLT-DLPEL--PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEI 309

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
             S+ D       L  LN+++N L  E+P       +L+ L  S N+L  +     +   
Sbjct: 310 R-SLCD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEVPELPQNLKQ 361

Query: 807 LHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 865
           LH  YN     PD P                                            D
Sbjct: 362 LHVEYNPLREFPDIPESVE----------------------------------------D 381

Query: 866 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
           L  N  +  +P    NL   + L++  N L    P        +E L ++  ++      
Sbjct: 382 LRMNSHLAEVPELPQNL---KQLHVETNPLR-EFP---DIPESVEDLRMNSERVVDPYEF 434

Query: 926 QLVDLNTLAIFIVAYNNLS 944
                + L   +  +++  
Sbjct: 435 AHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  112 bits (283), Expect = 3e-26
 Identities = 98/593 (16%), Positives = 187/593 (31%), Gaps = 152/593 (25%)

Query: 110 LSKLKKLDLRGNLCNN--SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 167
            + L++        +N   +      + S T  + + +  + +           +    +
Sbjct: 10  NTFLQEPLRH---SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRL 65

Query: 168 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATL 227
            D               R+   L+L+         L       P L +L    N+ T   
Sbjct: 66  RDCL------------DRQAHELELN------NLGLSSLPELPPHLESLVASCNSLT--- 104

Query: 228 TTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFK 287
              +   +  +L     +  +L          + P L+ L +S  ++  +       +  
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKLPE---LQNSS 153

Query: 288 SLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 347
            L+ +D+         + L+ + +  PSL++++        N    L + L  L  L  +
Sbjct: 154 FLKIIDVDN-------NSLKKLPDLPPSLEFIAAGN-----NQLEELPE-LQNLPFLTAI 200

Query: 348 YIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IP 406
           Y DNN L+  LP    +   L  +    N L        L +L  +  +   NN  + +P
Sbjct: 201 YADNNSLK-KLPDLPLS---LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLP 253

Query: 407 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 466
                      L+  + ++N +        SLT       L +S N              
Sbjct: 254 DLP------PSLEALNVRDNYLTDLPELPQSLT------FLDVSEN-------------- 287

Query: 467 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 526
                        + E P         L +L                          S+N
Sbjct: 288 ---------IFSGLSELP-------PNLYYLNA------------------------SSN 307

Query: 527 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 586
             +      + D+ PSL   N+S N L   +P+       L+ L  S N L  E+P+   
Sbjct: 308 EIR-----SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQ 357

Query: 587 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 646
               NL+ L +  N L+        S+ +LR      N  + E+P+      +LK L++ 
Sbjct: 358 ----NLKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPEL---PQNLKQLHVE 404

Query: 647 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
            N L  + P    +++ L+   M    +  P        D L+      ++  
Sbjct: 405 TNPLR-EFPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 1e-25
 Identities = 73/374 (19%), Positives = 124/374 (33%), Gaps = 75/374 (20%)

Query: 558 PSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 617
           P +  N  FLQ     ++ LT E+P        +      + +  + +        R + 
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLT-EMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 618 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 677
              L                     L LNN  LS  +P    +L   + +V   N L   
Sbjct: 62  VSRLRDC-----------LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-E 105

Query: 678 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 737
           +P     L SL + + +   +S   P       ++ + +S N L  +L E    N S L 
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL------LEYLGVSNNQLE-KLPE--LQNSSFLK 156

Query: 738 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
            +D+  N L   +PD       L  +   +N LE E+P +L  L  L  +   +N+L  L
Sbjct: 157 IIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL 210

Query: 798 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 857
                   ++    N              +                              
Sbjct: 211 PDLPLSLESIVAGNNILEELP-------ELQN---------------------------- 235

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           L  L  +    N L   +P    +L   + LN+  N LT  +P    +L  ++  +  ++
Sbjct: 236 LPFLTTIYADNNLLK-TLPDLPPSL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFS 290

Query: 918 KLSGKIPRQLVDLN 931
            LS ++P  L  LN
Sbjct: 291 GLS-ELPPNLYYLN 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 2e-22
 Identities = 96/545 (17%), Positives = 178/545 (32%), Gaps = 127/545 (23%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
            +       +W+     A     E      ++    LR  L                 L 
Sbjct: 33  VKSKTEYYNAWSEWERNAPPGNGE----QREMAVSRLRDCLDRQ-----------AHELE 77

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L++  L  S+     +   +LE L  + N +   E+    + L+ L   + +        
Sbjct: 78  LNNLGLS-SLP----ELPPHLESLVASCNSL--TELPELPQSLKSLLVDNNN------LK 124

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
            L       P L  L + +N     L    EL N + L+ + +D++S     L+ +  + 
Sbjct: 125 ALSDLP---PLLEYLGVSNNQ----LEKLPELQNSSFLKIIDVDNNS-----LKKLPDLP 172

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321
           PSL+ ++    ++  +       +   L  +         + + L+ + +   SL+ +  
Sbjct: 173 PSLEFIAAGNNQLEEL---PELQNLPFLTAIY-------ADNNSLKKLPDLPLSLESIVA 222

Query: 322 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGS 381
                  N    L + L  L  L  +Y DNN L+ +LP    +  +L + D     L   
Sbjct: 223 GN-----NILEELPE-LQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL 275

Query: 382 ISSSPLVHLTSIEELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 440
                     S+  L +S N F  +            L   +A +NEI    +   SL  
Sbjct: 276 PQ--------SLTFLDVSENIFSGLSELPP------NLYYLNASSNEIRSLCDLPPSLE- 320

Query: 441 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 500
                 L++S+N                           + E P        +LE L   
Sbjct: 321 -----ELNVSNN--------------------------KLIELPALP----PRLERLIAS 345

Query: 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS 560
            + LA    +P    + L+ L V  N  +   P     +       ++ MN+    +P  
Sbjct: 346 FNHLA---EVP-ELPQNLKQLHVEYNPLR-EFPDIPESVE------DLRMNSHLAEVPEL 394

Query: 561 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 620
             N   L+ L +  N L  E PD       ++E L +++  +         +   L   +
Sbjct: 395 PQN---LKQLHVETNPLR-EFPDIPE----SVEDLRMNSERVVDPYEFAHETTDKLEDDV 446

Query: 621 LEGNH 625
            E +H
Sbjct: 447 FEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 62/345 (17%), Positives = 120/345 (34%), Gaps = 56/345 (16%)

Query: 609 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
           R  S   L+  L   ++   E+P       S    Y   +      P   G  + +    
Sbjct: 6   RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 669 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 728
           +             C       L++++  +S SLP     L  + +  S N L  +L E 
Sbjct: 65  LRD-----------CLDRQAHELELNNLGLS-SLPELPPHL--ESLVASCNSLT-ELPEL 109

Query: 729 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 788
              +  SL+  + +   L+   P        L +L +++N LE ++P +L   + L+++D
Sbjct: 110 -PQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNNQLE-KLP-ELQNSSFLKIID 159

Query: 789 LSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK----TSFSISGPQGSVEKKILEIFEF 844
           + +N+L  L         +    N      +       T+             + ++ + 
Sbjct: 160 VDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN------NSLKKLPDL 213

Query: 845 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 904
                           L  +    N L     P++ NL  + T+   +N L  T+P    
Sbjct: 214 -------------PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 905 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
           +L   E+L++  N L+  +P     L  L +    ++ LS   P 
Sbjct: 258 SL---EALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 85.0 bits (211), Expect = 3e-17
 Identities = 63/353 (17%), Positives = 121/353 (34%), Gaps = 66/353 (18%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSS 136
            L      LE +    N +      E L  L  L  L  +       NNS+        S
Sbjct: 167 KLPDLPPSLEFIAAGNNQL------EELPELQNLPFLTAIYAD----NNSLKKLPDLPLS 216

Query: 137 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 196
           L S+   +NIL+   +  E  +L  L  +  ++N +  +           L++L++    
Sbjct: 217 LESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNY 268

Query: 197 IRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 256
           +     L +   S   L+      +  +             NL YL    +      ++S
Sbjct: 269 L---TDLPELPQSLTFLDVSENIFSGLSELP---------PNLYYLNASSNE-----IRS 311

Query: 257 IGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSL 316
           +  + PSL+ L++S  ++  +           LE L         + + L  + E   +L
Sbjct: 312 LCDLPPSLEELNVSNNKLIEL-----PALPPRLERLI-------ASFNHLAEVPELPQNL 359

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
           K L +       N  R           +++L ++++     +P    N   L+ L V  N
Sbjct: 360 KQLHVEY-----NPLREFPDIPE---SVEDLRMNSH--LAEVPELPQN---LKQLHVETN 406

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 429
            L       P     S+E+LR+++     P          KL+    +++  +
Sbjct: 407 PLR-EFPDIP----ESVEDLRMNSERVVDPYEFAHE-TTDKLEDDVFEHHHHH 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  132 bits (334), Expect = 3e-32
 Identities = 81/391 (20%), Positives = 146/391 (37%), Gaps = 62/391 (15%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
           ++    V++++ ++     +   F ++     + +   N+ +  ++P  L      +E L
Sbjct: 22  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80

Query: 596 SLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI 654
           +L++  ++  I +  F+    ++ L +  N      P        L  L L  N+LS   
Sbjct: 81  NLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 655 PRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 713
                N   L  + M  N+LE  I  + F    SLQ L +S N ++    S    L    
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL--FH 196

Query: 714 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 773
            ++S N+L       T     ++  LD S+N +N  +        +L+ L L HNNL  +
Sbjct: 197 ANVSYNLLS------TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-D 246

Query: 774 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISG 829
               L     L  +DLS N L  ++   F        L+ S N   + +   +       
Sbjct: 247 TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------ 299

Query: 830 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 889
                                       +  L  LDLS N L+ H+        R++ L 
Sbjct: 300 ----------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330

Query: 890 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           L HN++  T+    S    +++L LS+N   
Sbjct: 331 LDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  126 bits (317), Expect = 4e-30
 Identities = 87/585 (14%), Positives = 185/585 (31%), Gaps = 63/585 (10%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           L A+L   F+Q+E L+L+   I            +    ++KL +  N      +  +  
Sbjct: 66  LPAALLDSFRQVELLNLNDLQIEEIDTYA----FAYAHTIQKLYMGFNA-----IRYLPP 116

Query: 132 ---ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
                +  LT L L  N L  S+    F +   L  L +++N ++ +E    ++    L+
Sbjct: 117 HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQ 174

Query: 189 SLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
           +L LS       N+L    +   PSL   ++  N  +        L     +E L    S
Sbjct: 175 NLQLS------SNRLTHVDLSLIPSLFHANVSYNLLS-------TLAIPIAVEELDA--S 219

Query: 248 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
              I++++    +   L  L +     N +       ++  L  +D+ +  +      + 
Sbjct: 220 HNSINVVRG--PVNVELTILKLQH---NNLTDTAWLLNYPGLVEVDLSYNEL---EKIMY 271

Query: 308 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
                M  L+ L +S      N    L+    P+  L+ L + +N L   +         
Sbjct: 272 HPFVKMQRLERLYISN-----NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 427
           L  L +  N +     +  L    +++ L LS+N +          N ++  + D     
Sbjct: 326 LENLYLDHNSIV----TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDD----- 376

Query: 428 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 487
                 + H          L    +    +           + E                
Sbjct: 377 -----ADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTIN 431

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEI--GDILPSLV 544
              +            L G  +L    ++ R     ++N   Q    ++    +I  +L 
Sbjct: 432 SVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491

Query: 545 YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 604
            + +  + L  S  +       L+       + T              E L   N +L+ 
Sbjct: 492 RYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEK 551

Query: 605 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 649
            + ++      LR         V ++    ++    + +  ++++
Sbjct: 552 QLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHHHH 596

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  124 bits (313), Expect = 1e-29
 Identities = 100/592 (16%), Positives = 177/592 (29%), Gaps = 143/592 (24%)

Query: 334 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
           +D  L       +++ID         +      + +I+    + +   + ++ L     +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 394 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 453
           E L L++                          EI+              ++ L +  N 
Sbjct: 78  ELLNLNDLQIE----------------------EIDTYAFAYAH-----TIQKLYMGFN- 109

Query: 454 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 513
                                     I   P  + +N   L  L L              
Sbjct: 110 -------------------------AIRYLPPHVFQNVPLLTVLVL-------------- 130

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 573
                       N+    +P  I    P L   ++S N L+     +F     LQ L LS
Sbjct: 131 ----------ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179

Query: 574 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 633
           +N+LT  +   L     +L   ++S N L     S +     +  L    N     +   
Sbjct: 180 SNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGP 229

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
           +     L  L L +NNL+     WL N  GL  + +  N LE  +   F ++  L+ L I
Sbjct: 230 V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
           S+N +  +L                                +L  LDLS+N+L   +   
Sbjct: 286 SNNRLV-ALN------------------------LYGQPIPTLKVLDLSHNHLL-HVERN 319

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 813
                +L +L L HN++     ++L   + L+ L LS N+       C     L  +   
Sbjct: 320 QPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDWD-----CNSLRALFRNVAR 371

Query: 814 NSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 873
            +  D             G              K     Y  R+L  +A   +       
Sbjct: 372 PAVDDADQHCKIDYQLEHG-----------LCCKESDKPYLDRLLQYIALTSVVEK---- 416

Query: 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
            +    G  +   T+N   +            L+  E L+   N+L  ++ +
Sbjct: 417 -VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQ 467

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  119 bits (299), Expect = 7e-28
 Identities = 60/320 (18%), Positives = 113/320 (35%), Gaps = 27/320 (8%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
            I  +L        ++++              L   + +    + +             +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 689 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           ++L+++D  I       F    +I+++++  N +   L    F N   L  L L  N L+
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

Query: 748 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-T 805
            S+P  I     +L+ L++++NNLE            LQ L LS N L  +  S   +  
Sbjct: 137 -SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

Query: 806 TLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
             + SYN  S+            S         I  +                   L  L
Sbjct: 196 HANVSYNLLSTLAIPIAVEELDASHNS------INVVRGPVNVE------------LTIL 237

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
            L  N L       + N   +  ++LS+N L   +   F  ++ +E L +S N+L   + 
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 925 RQLVDLNTLAIFIVAYNNLS 944
                + TL +  +++N+L 
Sbjct: 295 LYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  117 bits (295), Expect = 2e-27
 Identities = 95/604 (15%), Positives = 201/604 (33%), Gaps = 76/604 (12%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
           ++ + K ++   ST+     ++    L     ++ L +++  +     +  A   +++ L
Sbjct: 49  TLNNQKIVTFKNSTM----RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL 104

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEING 430
            + FN +   +      ++  +  L L  N    +P  +    N  KL      NN +  
Sbjct: 105 YMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMSNNNLE- 160

Query: 431 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 490
            I E  +      L++L LSSN                           +      L+ +
Sbjct: 161 RI-EDDTFQATTSLQNLQLSSN--------------------------RLTHVDLSLIPS 193

Query: 491 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 550
              L    +  + L+      +     +  LD S+N+    +    G +   L    +  
Sbjct: 194 ---LFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQH 241

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI 610
           N L  +  +   N   L  +DLS N+L  +I  H  +    LE L +SNN L   +    
Sbjct: 242 NNL--TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 611 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
             +  L+ L L  NH +  + ++  +   L+ LYL++N++   +   L     L+++ + 
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 353

Query: 671 KNHLEG-PIPVEFCRLDSLQILDISDNNISG----------SLPSCFYPLSIKQVHLSKN 719
            N  +   +   F  +    + D   +                   +    ++ + L+  
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS-HLNLAHNNLEGEVPIQL 778
           +   Q  +G      ++ ++    +Y+       + G  QL   +N     ++     Q+
Sbjct: 414 VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQI 473

Query: 779 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-- 836
            +   LQ L    +          D         N        + +F +   Q    +  
Sbjct: 474 QQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEAD 533

Query: 837 -KILEIFEFTTKNIAYAYQ-----GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 890
            K  E  +   +NIA   Q      +   L     L   K+      +  N    +  + 
Sbjct: 534 AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHH 593

Query: 891 SHNN 894
            H++
Sbjct: 594 HHHH 597

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (258), Expect = 7e-23
 Identities = 78/485 (16%), Positives = 174/485 (35%), Gaps = 46/485 (9%)

Query: 107 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 166
           L        + +     +         L++   +   ++ ++  + A   DS   +E L+
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLN 81

Query: 167 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFPSLNTLHLESNNFTA 225
           +ND +I+ ++ +  +     ++ L +    IR     + Q++   P L  L LE N+ ++
Sbjct: 82  LNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVLERNDLSS 137

Query: 226 TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPH 285
                   HN   L  L++ +++L   +         SL+NL +S   +  V        
Sbjct: 138 LPRGI--FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL---- 190

Query: 286 FKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 345
             SL H ++ +  +   ++          +++ L  S      NS  ++   +     L 
Sbjct: 191 IPSLFHANVSYNLL---STL-----AIPIAVEELDASH-----NSINVVRGPVNV--ELT 235

Query: 346 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR- 404
            L + +N+L     W L N   L  +D+S+N+L   I   P V +  +E L +SNN    
Sbjct: 236 ILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA 292

Query: 405 IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLY 464
           + +  +P+     LK+ D  +N +              +L++L L  N   ++       
Sbjct: 293 LNLYGQPI---PTLKVLDLSHNHLLHVERNQPQFD---RLENLYLDHNSIVTLKLSTHHT 346

Query: 465 HQH-ELKEAELSHIKMIGEFPNW----LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 519
            ++  L   +     +   F N     + + +   +  Y +   L        +  + L+
Sbjct: 347 LKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 579
           ++ +++                +    N   +            +   + L+   N+L  
Sbjct: 407 YIALTSVV---EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

Query: 580 EIPDH 584
           E+   
Sbjct: 464 EVQQL 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  129 bits (327), Expect = 1e-31
 Identities = 98/474 (20%), Positives = 166/474 (35%), Gaps = 33/474 (6%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
                L I  N +       + + + LRIL +S N++   +  S       +E L LS+N
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHN 79

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
                +S  P      LK  D   N  +      E  +++   QLK L LS+ + +  + 
Sbjct: 80  KLVK-ISCHPT---VNLKHLDLSFNAFDALPICKEFGNMS---QLKFLGLSTTHLEKSSV 132

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWL---------LENNTKLEFLYLVNDSLAGPFRL 510
               +         L       E P  L         +   T  EF ++++ S+     L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 570
            + + K +   +  +        ++    L +L   NI                  + + 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 571 DLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
            +SN KL G       D+       L    + ++              N+       +  
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCR 684
                   SK S    L  +NN L+  +    G+L  L+ +++  N L+    I     +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 685 LDSLQILDISDNNISGSLP--SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT-LDL 741
           + SLQ LDIS N++S       C +  S+  +++S N     L +  F      +  LDL
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN----ILTDTIFRCLPPRIKVLDL 428

Query: 742 SYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
             N +  SIP  +  L  L  LN+A N L+        RL  LQ + L  N   
Sbjct: 429 HSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  121 bits (304), Expect = 8e-29
 Identities = 81/470 (17%), Positives = 164/470 (34%), Gaps = 43/470 (9%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
           S+  L+ L +S + +      +          L+ L + +N L   +      T +L+ L
Sbjct: 43  SLSKLRILIISHNRIQYLDISVFKF----NQELEYLDLSHNKLV-KISC--HPTVNLKHL 95

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 431
           D+SFN            +++ ++ L LS  H     S+ P+ + +  K+         GE
Sbjct: 96  DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-SSVLPIAHLNISKVLLVLGET-YGE 153

Query: 432 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH-QHELKEAELSHIKMIGEFPNWLLEN 490
             +   L       + SL   +  +  F   L      +   ELS+IK + E        
Sbjct: 154 KEDPEGLQ---DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 491 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 550
           +   +       S      +    +  +R L +  +               ++ YF+IS 
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT--------------TVWYFSISN 256

Query: 551 NALDGSIPSSFGNVIF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 605
             L G +     +        L    + ++        ++     N+   + + +  +  
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGTRMV 315

Query: 606 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG---NLK 662
                  +     L    N     + ++    + L+ L L  N L  ++ +       +K
Sbjct: 316 HMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMK 374

Query: 663 GLQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 721
            LQ + + +N +        C    SL  L++S N ++ ++  C  P  IK + L  N +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKI 433

Query: 722 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNL 770
              + +       +L  L+++ N L  S+PD   D L+ L  + L  N  
Sbjct: 434 K-SIPKQ-VVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  120 bits (303), Expect = 1e-28
 Identities = 106/541 (19%), Positives = 180/541 (33%), Gaps = 86/541 (15%)

Query: 135 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
              T L++S N +   +   +  SLS L  L I+ N I  +++S  ++  ++L+ LDLS 
Sbjct: 21  QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSH 78

Query: 195 VGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 253
                 NKL++ S     +L  L L  N F   L   +E  N + L++L L  + L  S 
Sbjct: 79  ------NKLVKISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 254 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 313
           +         L    +           +     +      +       N  F  I+  S+
Sbjct: 132 VLP----IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP-TNKEFHFILDVSV 186

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 373
            ++  L LS      N   +L+   C         +  N    +L        +L  ++ 
Sbjct: 187 KTVANLELS------NIKCVLEDNKCSYFLSILAKLQTNPKLSNL--------TLNNIET 232

Query: 374 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 433
           ++N          LV  T++    +SN   +  +     F++S                 
Sbjct: 233 TWNSFI---RILQLVWHTTVWYFSISNVKLQGQLDFR-DFDYSGTS-------------- 274

Query: 434 ESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTK 493
                     LK+LS+     D   FP                        +++ E  + 
Sbjct: 275 ----------LKALSIHQVVSDVFGFP-----------------------QSYIYEIFSN 301

Query: 494 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
           +               L          LD SNN        E    L  L    + MN L
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQL 360

Query: 554 D--GSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF 611
                I      +  LQ LD+S N ++ +          +L  L++S+N L   IF  + 
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 612 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 671
               ++ L L  N     IP+ + K  +L+ L + +N L          L  LQ I +  
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 672 N 672
           N
Sbjct: 478 N 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  114 bits (286), Expect = 2e-26
 Identities = 90/498 (18%), Positives = 165/498 (33%), Gaps = 66/498 (13%)

Query: 444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDS 503
              L++S NY   +     L     L+   +SH + I      + + N +LE+L L ++ 
Sbjct: 23  TTILNISQNYISELWTSDILSLSK-LRILIISHNR-IQYLDISVFKFNQELEYLDLSHNK 80

Query: 504 LAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGN 563
           L     +  H    L+ LD+S N F      +    +  L +  +S   L+ S      +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 564 VIFLQ-FLDLSNNKLTGEIPDHLAMCCV-NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 621
           +   +  L L       E P+ L      +L  +  +N      +   + ++ NL    +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 622 EGNHFVGEIPQSLSKCSSL------KGLYLNNNNLSGKIPRWLGNLKG--------LQHI 667
           +      +    LS  + L        L LNN   +      +  L          + ++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 668 VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLHGQ 724
            +               L +L I  +  +         +   S   IK   +S       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT---RM 314

Query: 725 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLN 782
           +        S  + LD S N L  ++ +    L++L  L L  N L+   ++     ++ 
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 783 QLQLLDLSDNNL-HGLIPSCFDN-TTLHESY-NNNSSPDKPFKTSFSISGPQGSVEKKIL 839
            LQ LD+S N++ +           +L     ++N   D  F                  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------------------ 416

Query: 840 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 899
                            +   +  LDL  NK+   IP Q+  L  +Q LN++ N L    
Sbjct: 417 ---------------RCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460

Query: 900 PLTFSNLRHIESLDLSYN 917
              F  L  ++ + L  N
Sbjct: 461 DGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (280), Expect = 9e-26
 Identities = 89/505 (17%), Positives = 156/505 (30%), Gaps = 83/505 (16%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSV 131
           L  S      +L  L +S N I      + L+        +L+ LDL  N      L  +
Sbjct: 36  LWTSDILSLSKLRILIISHNRI------QYLDISVFKFNQELEYLDLSHNK-----LVKI 84

Query: 132 --ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 189
                 +L  L LS N        KEF ++S L+ L ++   ++          +  +  
Sbjct: 85  SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAH 137

Query: 190 LDLSGVGIRDGNKLLQSM--GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL--- 244
           L++S V +  G    +          NT  L     T          +   +  L L   
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 245 ----------DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
                        S+   L  +      +L N+  +      +L              ++
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 295 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
           +     L+       G S+ +L    +     G   S I +      +++       +  
Sbjct: 258 KLQGQ-LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI----FSNMNIKNFTVSGT 312

Query: 355 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLF 413
           R     C +  +    LD S N LT         HLT +E L L  N  + +    E   
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 414 NHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAE 473
               L+  D   N ++ +  +      K  L SL++SSN      F              
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTK-SLLSLNMSSNILTDTIFRCLP---------- 420

Query: 474 LSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQ 529
                              +++ L L ++ +        +L       L+ L+V++N  +
Sbjct: 421 ------------------PRIKVLDLHSNKIKSIPKQVVKLE-----ALQELNVASNQLK 457

Query: 530 GHIPVEIGDILPSLVYFNISMNALD 554
             +P  I D L SL    +  N  D
Sbjct: 458 -SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  108 bits (271), Expect = 1e-24
 Identities = 76/400 (19%), Positives = 145/400 (36%), Gaps = 30/400 (7%)

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
            +D S N L   +P  L+        L++S N +     S I SL  LR L++  N    
Sbjct: 4   LVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRLDS 687
                      L+ L L++N L  KI         L+H+ +  N  +  PI  EF  +  
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116

Query: 688 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           L+ L +S  ++  S       L+I +V L     +G+ ++          T  L   +  
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL--QDFNTESLHIVFPT 174

Query: 748 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL----------------LDLSD 791
                +I  +S  +  NL  +N++  +    C      L                ++ + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N+   ++   +  T  + S +N     +     F  SG   S++   +            
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVFGFPQ 292

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 911
           +Y   + S +   + + +            ++    L+ S+N LT T+     +L  +E+
Sbjct: 293 SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 912 LDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
           L L  N+L    KI      + +L    ++ N++S    +
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 5e-24
 Identities = 76/438 (17%), Positives = 153/438 (34%), Gaps = 50/438 (11%)

Query: 512 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 571
           I S  +LR L +S+N  Q ++ + +      L Y ++S N L   I       + L+ LD
Sbjct: 41  ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VKIS--CHPTVNLKHLD 96

Query: 572 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR-WLLLEGNHF 626
           LS N        +   ++      L+FL LS   L+      I  L   +  L+L   + 
Sbjct: 97  LSFNAFDALPICKEFGNM----SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 627 VGEIPQSLSKC--SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH----------- 673
             E P+ L      SL  ++  N      +   +  +  L+   +               
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK----EGT 729
           L            +L  ++ + N+    +    +  ++    +S   L GQL     + +
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271

Query: 730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
             +  +L    +  +          +  S ++  N   +       +   +++    LD 
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331

Query: 790 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 845
           S+N L   +     +     TL    N      K  + +  +           L+  + +
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---------LQQLDIS 382

Query: 846 TKNIAYAYQGRV---LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLT 902
             +++Y  +         L  L++S N L   I   +    RI+ L+L  N +  +IP  
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQ 439

Query: 903 FSNLRHIESLDLSYNKLS 920
              L  ++ L+++ N+L 
Sbjct: 440 VVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 77.2 bits (190), Expect = 1e-14
 Identities = 65/351 (18%), Positives = 125/351 (35%), Gaps = 46/351 (13%)

Query: 61  LYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAEN--EGLERLSRLSKLKKLDL 118
           L++    + E+ ++          LE  ++               L +L    KL  L L
Sbjct: 168 LHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTL 227

Query: 119 RGNLCNNSILSSV---ARLSSLTSLHLSHNILQGSIDAKEFD-SLSNLEELDINDNEIDN 174
                  +    +      +++    +S+  LQG +D ++FD S ++L+ L I+    D 
Sbjct: 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV 287

Query: 175 VEV--SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQE 232
                S  Y     +   + +  G R     +           L   +N  T T    + 
Sbjct: 288 FGFPQSYIYEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFSNNLLTDT--VFEN 343

Query: 233 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 292
             + T LE L L  + L    L  I  +   +K+L                      + L
Sbjct: 344 CGHLTELETLILQMNQL--KELSKIAEMTTQMKSL----------------------QQL 379

Query: 293 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
           D+      ++    +       SL  L++S + L     R L         ++ L + +N
Sbjct: 380 DISQNS--VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP------RIKVLDLHSN 431

Query: 353 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
            ++ S+P  +    +L+ L+V+ NQL  S+       LTS++++ L  N +
Sbjct: 432 KIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (311), Expect = 6e-31
 Identities = 68/368 (18%), Positives = 112/368 (30%), Gaps = 84/368 (22%)

Query: 566 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 624
            L+ +  S+  L  ++P  L     +   L L NN +   I    F  L+NL  L+L  N
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN 86

Query: 625 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
                 P + +    L+ LYL+ N L  ++P  +                          
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------- 119

Query: 685 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLS 742
             +LQ L + +N I+    S F  L  +  V L  N L    ++ G F     L  + ++
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
              +  +IP        L+ L+L  N +       L  LN L  L LS N++  +     
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 803 DN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 858
            N      LH + N                                              
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGL----------------------------------ADH 262

Query: 859 SLLAGLDLSCNKL------VGHIPPQIGNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 910
             +  + L  N +          P           ++L  N +      P TF  +    
Sbjct: 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 322

Query: 911 SLDLSYNK 918
           ++ L   K
Sbjct: 323 AVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 2e-29
 Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 22/286 (7%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
           LR +  S+   +  +P    D+ P     ++  N +       F N+  L  L L NNK+
Sbjct: 33  LRVVQCSDLGLE-KVP---KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 578 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 637
           + +I        V LE L LS N LK  +  ++   + L+ L +  N          +  
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGL 144

Query: 638 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
           + +  + L  N L            +K L +I +   ++   IP       SL  L +  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 696 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
           N I+    +    L ++ ++ LS N +   +  G+  N   L  L L+ N L   +P  +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 755 DGLSQLSHLNLAHNNLEG------EVPIQLCRLNQLQLLDLSDNNL 794
                +  + L +NN+          P    +      + L  N +
Sbjct: 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (268), Expect = 4e-25
 Identities = 52/289 (17%), Positives = 101/289 (34%), Gaps = 36/289 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           +    F   + L +L L  N I+  +        + L KL++L L  N      L  +  
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGA----FAPLVKLERLYLSKNQ-----LKELPE 117

Query: 134 --LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY-RGLRKLKSL 190
               +L  L +  N +   +    F+ L+ +  +++  N + +  +  G  +G++KL  +
Sbjct: 118 KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 191 DLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD--- 246
            ++         +     G  PSL  LHL+ N  T        L    NL  L L     
Sbjct: 177 RIA------DTNITTIPQGLPPSLTELHLDGNKITK--VDAASLKGLNNLAKLGLSFNSI 228

Query: 247 SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNT 303
           S++    L +     P L+ L ++  ++  V    G    K ++ + +     + I  N 
Sbjct: 229 SAVDNGSLANT----PHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNNNISAIGSND 282

Query: 304 SFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
                      S   +SL  + +      I       +     + + N 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWE--IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  101 bits (254), Expect = 2e-23
 Identities = 58/330 (17%), Positives = 112/330 (33%), Gaps = 67/330 (20%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSH 144
              LDL  N I               +++K  D +              L +L +L L +
Sbjct: 54  TALLDLQNNKI---------------TEIKDGDFKN-------------LKNLHTLILIN 85

Query: 145 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL 204
           N +   I    F  L  LE L ++ N++  +         + L+ L +        N++ 
Sbjct: 86  NKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQELRVH------ENEIT 134

Query: 205 Q-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI 260
           +     F     +  + L +N   ++            L Y+ + D+  +I+ +     +
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT--NITTIPQ--GL 190

Query: 261 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKY 318
            PSL  L + G ++   +         +L  L + F  I+   N S       + P L+ 
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL-----ANTPHLRE 244

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG------SLPWCLANTTSLRILD 372
           L L+      N    +  GL    ++Q +Y+ NN++          P       S   + 
Sbjct: 245 LHLNN-----NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 373 VSFNQLT-GSISSSPLVHLTSIEELRLSNN 401
           +  N +    I  S    +     ++L N 
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 4e-23
 Identities = 62/338 (18%), Positives = 117/338 (34%), Gaps = 54/338 (15%)

Query: 123 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C++  L  V +        L L +N +   I   +F +L NL  L + +N+I  +     
Sbjct: 38  CSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKIS-PGA 95

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 239
           +  L KL+ L LS       N+L +       +L  L +  N  T    +    +    +
Sbjct: 96  FAPLVKLERLYLSK------NQLKELPEKMPKTLQELRVHENEITKVRKSV--FNGLNQM 147

Query: 240 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 299
             + L  + L  S +++    F  +K L                       ++ +    I
Sbjct: 148 IVVELGTNPLKSSGIEN--GAFQGMKKL----------------------SYIRIADTNI 183

Query: 300 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 359
                   I     PSL  L L G+ +    +++    L  L +L +L +  N +     
Sbjct: 184 T------TIPQGLPPSLTELHLDGNKI----TKVDAASLKGLNNLAKLGLSFNSISAVDN 233

Query: 360 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVS----LEPLFN 414
             LANT  LR L ++ N+L   +    L     I+ + L NN+   I  +          
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 415 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
            +        +N +     +  +    +   ++ L + 
Sbjct: 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 7e-20
 Identities = 61/266 (22%), Positives = 104/266 (39%), Gaps = 29/266 (10%)

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
            L+++  SD  +   +P    P     + L  N +  ++K+G F N  +L TL L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL-PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI 88

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 804
           +   P     L +L  L L+ N L+ E+P ++     LQ L + +N +  +  S F+   
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 805 --TTLHESYNNNSS---PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 859
               +    N   S    +  F+                L        NI       +  
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKK------------LSYIRIADTNITTI-PQGLPP 192

Query: 860 LLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 918
            L  L L  NK+   +       L  +  L LS N+++     + +N  H+  L L+ NK
Sbjct: 193 SLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251

Query: 919 LSGKIPRQLVDLNTLAIFIVAYNNLS 944
           L  K+P  L D   + +  +  NN+S
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 3e-19
 Identities = 64/317 (20%), Positives = 111/317 (35%), Gaps = 49/317 (15%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
                L + NN +         N  +L  L +  N+++  IS      L  +E L LS N
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110

Query: 402 HFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
             + +P   E +     L+      NEI  ++ +S       Q+  + L +N        
Sbjct: 111 QLKELP---EKMP--KTLQELRVHENEIT-KVRKS-VFNGLNQMIVVELGTN-------- 155

Query: 461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRF 520
                   LK + +          N   +   KL ++ + + ++     +P      L  
Sbjct: 156 -------PLKSSGI---------ENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTE 196

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           L +  N     +       L +L    +S N++      S  N   L+ L L+NNKL  +
Sbjct: 197 LHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-------SLRNLRWLLLEGNHF-VGEIPQ 632
           +P  LA     ++ + L NN++   I S  F          +   + L  N     EI  
Sbjct: 255 VPGGLA-DHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 633 SLSKC-SSLKGLYLNNN 648
           S  +C      + L N 
Sbjct: 313 STFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 4e-16
 Identities = 61/328 (18%), Positives = 111/328 (33%), Gaps = 58/328 (17%)

Query: 260 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 319
           + P    L +   ++   +    F + K+L  L +   +I   +         +  L+ L
Sbjct: 50  LPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKI---SKISPGAFAPLVKLERL 105

Query: 320 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 379
            LS      N  + L + +     LQEL +  N++             + ++++  N L 
Sbjct: 106 YLSK-----NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 380 GS-ISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 437
            S I +     +  +  +R+++ +   IP  L        L       N+I  ++ ++ S
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGL---P--PSLTELHLDGNKIT-KV-DAAS 211

Query: 438 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 497
           L     L  L LS N                           I    N  L N   L  L
Sbjct: 212 LKGLNNLAKLGLSFN--------------------------SISAVDNGSLANTPHLREL 245

Query: 498 YLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQ-----GHIPVEIGDILPSLVYFNISM 550
           +L N+ L    ++P  +  HK ++ + + NNN          P        S    ++  
Sbjct: 246 HLNNNKLV---KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 551 NALDGSI--PSSFGNVIFLQFLDLSNNK 576
           N +      PS+F  V     + L N K
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 28/185 (15%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSR--LSKLKKLDLRGNLCNNSILSS 130
            +    F   ++L  + ++  NI           + +     L +L L GN      ++ 
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNI---------TTIPQGLPPSLTELHLDGNK-----ITK 206

Query: 131 V-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLR 185
           V       L++L  L LS N +  ++D     +  +L EL +N+N++  V+V  G    +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL--VKVPGGLADHK 263

Query: 186 KLKSLDLSGVGIRD-GNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEY 241
            ++ + L    I   G+      G      S + + L SN                    
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 242 LTLDD 246
           + L +
Sbjct: 324 VQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 40/222 (18%), Positives = 65/222 (29%), Gaps = 63/222 (28%)

Query: 731 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
           F C   L  +  S   L   +P  +      + L+L +N +          L  L  L L
Sbjct: 27  FRCQCHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL 83

Query: 790 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 849
            +N +  + P  F                                               
Sbjct: 84  INNKISKISPGAFAP--------------------------------------------- 98

Query: 850 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
                   L  L  L LS N+L   +P        +Q L +  N +T      F+ L  +
Sbjct: 99  --------LVKLERLYLSKNQLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQM 147

Query: 910 ESLDLSYNKL-SGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 949
             ++L  N L S  I       +  L+   +A  N++  IP+
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (318), Expect = 8e-31
 Identities = 87/434 (20%), Positives = 142/434 (32%), Gaps = 71/434 (16%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLR 614
            +P+       + ++DLS N +  E+ +       +L+FL +   +    I +  F  L 
Sbjct: 27  ELPAH------VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 615 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPR-WLGNLKGLQHIVMPKN 672
           +L  L L+ N F+     + +  ++L+ L L   NL    +   +   L  L+ +V+  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 673 HLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQV---HLSKNMLH------ 722
           +++   P   F  +    +LD++ N +             K      LS   L       
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 723 -GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 781
            G  K G  F  +S+ TLDLS N    S+          + +     +            
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN---SYNMGSSF 256

Query: 782 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 840
                 D  +    GL  S     T   S +   +     F                   
Sbjct: 257 GHTNFKDPDNFTFKGLEAS--GVKTCDLSKSKIFALLKSVFSH----------------- 297

Query: 841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTI 899
                             + L  L L+ N++   I       LT +  LNLS N L    
Sbjct: 298 -----------------FTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSID 339

Query: 900 PLTFSNLRHIESLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFN 958
              F NL  +E LDLSYN +   +  Q    L  L    +  N L   +P+    F    
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGI--FDRLT 395

Query: 959 KSSY---DGNPFLC 969
                    NP+ C
Sbjct: 396 SLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 6e-25
 Identities = 81/434 (18%), Positives = 147/434 (33%), Gaps = 61/434 (14%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
           AH+  + +  N +        +    L+ L V        I ++    L+S+  L+L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 402 HFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
            F     LE   FN  + L++       ++G +   +   P   L+ L L  N       
Sbjct: 90  QFL---QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN------- 139

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 519
                           +IK I   P     N  +   L L  +         + S     
Sbjct: 140 ----------------NIKKIQ--PASFFLNMRRFHVLDLTFN--------KVKSICEED 173

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 579
            L+    +F           L S+   +++   L      +      +  LDLS N    
Sbjct: 174 LLNFQGKHFTLL-------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226

Query: 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
            +           +  SL  +    + ++   S  +  +   +   F G       + S 
Sbjct: 227 SMAKRFFDAIAGTKIQSLILS----NSYNMGSSFGHTNFKDPDNFTFKG------LEASG 276

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
           +K   L+ + +   +     +   L+ + + +N +       F  L  L  L++S N + 
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336

Query: 700 GSLPSC-FYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DG 756
            S+ S  F  L  ++ + LS N +   L + +F    +L  L L  N L  S+PD I D 
Sbjct: 337 -SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDR 393

Query: 757 LSQLSHLNLAHNNL 770
           L+ L  + L  N  
Sbjct: 394 LTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (257), Expect = 5e-23
 Identities = 69/343 (20%), Positives = 112/343 (32%), Gaps = 39/343 (11%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           LN + F+  Q L+ L +          N        LS L  L L  N         +  
Sbjct: 45  LNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKLDYNQ-----FLQLET 96

Query: 132 ---ARLSSLTSLHLSHNILQGS-IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
                L++L  L L+   L G+ +    F  L++LE L + DN I  ++ +  +  +R+ 
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 188 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA------TLTTTQELHNFTNLEY 241
             LDL+   ++   +             L L S                      T++  
Sbjct: 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216

Query: 242 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 301
           L L  +    S+ +         K  S+       + S  G  +FK              
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP------------ 264

Query: 302 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 361
                   G     +K   LS S +      +          L++L +  N++       
Sbjct: 265 --DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----FTDLEQLTLAQNEINKIDDNA 318

Query: 362 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
               T L  L++S N L  SI S    +L  +E L LS NH R
Sbjct: 319 FWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.5 bits (230), Expect = 1e-19
 Identities = 82/413 (19%), Positives = 149/413 (36%), Gaps = 59/413 (14%)

Query: 123 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 181
           C N  L  V  L + +  + LS N +   ++   F  L +L+ L +       V  +  +
Sbjct: 17  CINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75

Query: 182 RGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFT 237
           RGL  L  L L        N+ LQ   G+F    +L  L L   N    + +       T
Sbjct: 76  RGLSSLIILKLD------YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129

Query: 238 NLEYLTLDDSSLHISLLQSI--GSIF---PSLKNLSMSG----CEVNGVLSGQGFPHFKS 288
           +LE L L D++     ++ I   S F        L ++           L      HF  
Sbjct: 130 SLEMLVLRDNN-----IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184

Query: 289 LEHLDMRFARIALNTSFLQIIG--ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 346
           L    +    +       +  G      S+  L LSG+    + ++           +Q 
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF-DAIAGTKIQS 243

Query: 347 LYIDNNDLRGSLPWCLANT------------TSLRILDVSFNQLTGSISSSPLVHLTSIE 394
           L + N+   GS                    + ++  D+S +++  ++  S   H T +E
Sbjct: 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLE 302

Query: 395 ELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGEINES--HSLTPKFQLKSLSLS 450
           +L L+ N       ++   F   + L   +   N + G I+     +L    +L+ L LS
Sbjct: 303 QLTLAQNEIN---KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLD---KLEVLDLS 355

Query: 451 SNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVN 501
            N+  ++   +       LKE  L    +K +   P+ + +  T L+ ++L  
Sbjct: 356 YNHIRALG-DQSFLGLPNLKELALDTNQLKSV---PDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 9e-12
 Identities = 65/338 (19%), Positives = 118/338 (34%), Gaps = 85/338 (25%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLS-------RLSKLKKLDLRGNLCNNSIL 128
           AS F   ++   LDL++N +      E L           RLS +   D+          
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 129 SSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
            +  + +S+T+L LS N  + S+  + FD+++  +   +  +   N+  S G+   +   
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 189 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS 248
           +    G+                 + T  L  +   A L +     +FT+LE LTL  + 
Sbjct: 266 NFTFKGL-------------EASGVKTCDLSKSKIFALLKSV--FSHFTDLEQLTLAQNE 310

Query: 249 LHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
                +  I  + F  L +L                                        
Sbjct: 311 -----INKIDDNAFWGLTHL---------------------------------------- 325

Query: 308 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL-ANTT 366
                      L+LS + LG+  SR+ +     L  L+ L +  N +R +L         
Sbjct: 326 ---------LKLNLSQNFLGSIDSRMFEN----LDKLEVLDLSYNHIR-ALGDQSFLGLP 371

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           +L+ L +  NQL  S+       LTS++++ L  N + 
Sbjct: 372 NLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  119 bits (300), Expect = 1e-29
 Identities = 62/242 (25%), Positives = 98/242 (40%), Gaps = 11/242 (4%)

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH- 625
             +  ++  LT  +P  +     +   L L +N L+  +   +F  L  L  L L  N  
Sbjct: 10  TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 626 -FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 683
            F G   QS    +SLK L L+ N +   +      L+ L+H+    ++L+       F 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 684 RLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
            L +L  LDIS  +   +    F  L S++ + ++ N          F    +L  LDLS
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
              L    P   + LS L  LN++HNN           LN LQ+LD S N++        
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 803 DN 804
            +
Sbjct: 244 QH 245

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  112 bits (283), Expect = 2e-27
 Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 35/282 (12%)

Query: 519 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
             +  ++      +P     I  S     +  N L       F  +  L  L LS+N L+
Sbjct: 10  TEIRCNSKGLT-SVP---TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 579 -GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-SK 636
                        +L++L LS N +   + S    L  L  L  + ++       S+   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 637 CSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFCRLDSLQILDISD 695
             +L  L +++ +           L  L+ + M  N   E  +P  F  L +L  LD+S 
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 696 NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 755
             +                         QL    F + SSL  L++S+N           
Sbjct: 185 CQLE------------------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 756 GLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLH 795
            L+ L  L+ + N++      Q  +   + L  L+L+ N+  
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (260), Expect = 3e-24
 Identities = 67/292 (22%), Positives = 107/292 (36%), Gaps = 54/292 (18%)

Query: 123 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           CN+  L+SV     SS T L L  N LQ S+    FD L+ L +L ++ N +        
Sbjct: 14  CNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 181 -YRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNF 236
              G   LK LDLS       N ++    +F     L  L  + +N    ++      + 
Sbjct: 73  SDFGTTSLKYLDLS------FNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 125

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 293
            NL YL +  S  H  +  +   IF    SL+ L M+G           F   ++L  LD
Sbjct: 126 RNLIYLDI--SHTHTRVAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 294 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 353
           +   ++                                ++       L+ LQ L + +N+
Sbjct: 182 LSQCQL-------------------------------EQLSPTAFNSLSSLQVLNMSHNN 210

Query: 354 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELRLSNNHFR 404
                 +      SL++LD S N +  +     L H  +S+  L L+ N F 
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 59/291 (20%), Positives = 98/291 (33%), Gaps = 65/291 (22%)

Query: 687 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQ-LKEGTFFNCSSLVTLDLSYN 744
           S   L++  N +       F  L  + ++ LS N L  +     + F  +SL  LDLS+N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGLIPSCFD 803
            +  ++     GL QL HL+  H+NL+      +   L  L  LD+S  +        F+
Sbjct: 89  GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 804 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 863
                                                                 LS L  
Sbjct: 148 G-----------------------------------------------------LSSLEV 154

Query: 864 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 922
           L ++ N    +  P I   L  +  L+LS   L    P  F++L  ++ L++S+N     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 923 IPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKS----SYDGNPFLC 969
                  LN+L +   + N++     +       F  S    +   N F C
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIM-TSKKQE--LQHFPSSLAFLNLTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 53/279 (18%), Positives = 100/279 (35%), Gaps = 49/279 (17%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
                 L+L  N +                 L                    L+ LT L 
Sbjct: 27  PSSATRLELESNKL---------------QSLPHGVFDK-------------LTQLTKLS 58

Query: 142 LSHN-ILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 200
           LS N +      ++     ++L+ LD++ N +  + +S  + GL +L+ LD     ++  
Sbjct: 59  LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQ- 115

Query: 201 NKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 257
              +     F    +L  L +   +           +  ++LE L +  +S   + L  I
Sbjct: 116 ---MSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 258 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPSL 316
            +   +L  L +S C++   LS   F    SL+ L+M      +L+T   +     + SL
Sbjct: 171 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK----CLNSL 225

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR 355
           + L  S + + T+  + L       + L  L +  ND  
Sbjct: 226 QVLDYSLNHIMTSKKQELQH---FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/231 (22%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-A 132
           L   +F    QL  L LS N ++              + LK LDL  N      +SS   
Sbjct: 43  LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS--DFGTTSLKYLDLSFN--GVITMSSNFL 98

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
            L  L  L   H+ L+   +   F SL NL  LDI+         +  + GL  L+ L +
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKM 157

Query: 193 SGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD- 246
           +      GN   ++     F    +L  L L          T    ++ ++L+ L +   
Sbjct: 158 A------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN 209

Query: 247 --SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
              SL     + +     SL+ L  S   +      +      SL  L++ 
Sbjct: 210 NFFSLDTFPYKCL----NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 39/176 (22%), Positives = 65/176 (36%), Gaps = 15/176 (8%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
           F   +QLE LD   +N+   +E         L  L  LD+       +       LSSL 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            L ++ N  Q +     F  L NL  LD++  +++ +     +  L  L+ L++S     
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMS----- 207

Query: 199 DGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
             N         +    SL  L    N+   T    +  H  ++L +L L  +   
Sbjct: 208 -HNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 46/236 (19%), Positives = 88/236 (37%), Gaps = 14/236 (5%)

Query: 444 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLVN 501
              L L SN   S+          +L +  LS   +       +      T L++L L  
Sbjct: 30  ATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFK-GCCSQSDFGTTSLKYLDLSF 87

Query: 502 ---DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIP 558
               +++  F       ++L  LD  ++N +      +   L +L+Y +IS      +  
Sbjct: 88  NGVITMSSNFL----GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 143

Query: 559 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLR 617
             F  +  L+ L ++ N         +     NL FL LS   L+  +    F+ L +L+
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 202

Query: 618 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL-KGLQHIVMPKN 672
            L +  N+F           +SL+ L  + N++     + L +    L  + + +N
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 46/271 (16%), Positives = 96/271 (35%), Gaps = 21/271 (7%)

Query: 236 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV-LSGQGFPHFKSLEHLDM 294
            ++   L L+ + L  SL   +      L  LS+S   ++      Q      SL++LD+
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 295 RFARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNN 352
            F  +  ++++F       +  L++L    S L     ++ +  +   L +L  L I + 
Sbjct: 86  SFNGVITMSSNF-----LGLEQLEHLDFQHSNL----KQMSEFSVFLSLRNLIYLDISHT 136

Query: 353 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL 412
             R +        +SL +L ++ N    +        L ++  L LS       +S    
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAF 195

Query: 413 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 472
            + S L++ +  +N       ++        L+ L  S N+  +    +  +    L   
Sbjct: 196 NSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 473 ELSH-----IKMIGEFPNWLLENNTKLEFLY 498
            L+            F  W+ +    L  + 
Sbjct: 254 NLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 284

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 40/215 (18%), Positives = 62/215 (28%), Gaps = 58/215 (26%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSD 791
           SS   L+L  N L        D L+QL+ L+L+ N L   G           L+ LDLS 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N +   + S F                                                 
Sbjct: 88  NGVIT-MSSNFLG----------------------------------------------- 99

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 910
                 L  L  LD   + L       +  +L  +  L++SH +        F+ L  +E
Sbjct: 100 ------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 153

Query: 911 SLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 944
            L ++ N            +L  L    ++   L 
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 14/127 (11%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV- 131
                +F     LE L ++ N+       +     + L  L  LDL         L  + 
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQ-----LEQLS 191

Query: 132 ----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
                 LSSL  L++SHN    S+D   +  L++L+ LD + N I   +          L
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250

Query: 188 KSLDLSG 194
             L+L+ 
Sbjct: 251 AFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 36/194 (18%), Positives = 61/194 (31%), Gaps = 40/194 (20%)

Query: 761 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 816
           + +      L   VP  +   +    L+L  N L  L    FD     T L  S N  S 
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 817 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 876
                                       +             + L  LDLS N ++  + 
Sbjct: 67  ----------------------KGCCSQSDFG---------TTSLKYLDLSFNGVI-TMS 94

Query: 877 PQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 935
                L +++ L+  H+NL        F +LR++  LD+S+             L++L +
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 936 FIVAYNNLSGKIPE 949
             +A N+       
Sbjct: 155 LKMAGNSFQENFLP 168

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA 132
                +FT  + L  LDLS   +   +        + LS L+ L++  N   +       
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPT----AFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSL-SNLEELDINDNEID 173
            L+SL  L  S N +  +   +E     S+L  L++  N+  
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 5e-28
 Identities = 59/301 (19%), Positives = 109/301 (36%), Gaps = 27/301 (8%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
           LR +  S+   +  +P    +I P     ++  N +       F  +  L  L L NNK+
Sbjct: 35  LRVVQCSDLGLK-AVPK---EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 578 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 637
           + +I +        L+ L +S N L   I   +    +L  L +  N          S  
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146

Query: 638 SSLKGLYLNNNNLSGKI--PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
            ++  + +  N L      P     LK L ++ + +  L G IP +    ++L  L +  
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDL--PETLNELHLDH 202

Query: 696 NNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
           N I             + ++ L  N +   ++ G+     +L  L L  N L+  +P  +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 755 DGLSQLSHLNLAHNNLEGEVP-------IQLCRLNQLQLLDLSDNNL--HGLIPSCFDNT 805
             L  L  + L  NN+  +V            +      + L +N +    + P+ F   
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

Query: 806 T 806
           T
Sbjct: 320 T 320

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  109 bits (274), Expect = 5e-26
 Identities = 69/368 (18%), Positives = 112/368 (30%), Gaps = 85/368 (23%)

Query: 566 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGN 624
            L+ +  S+  L   +P  ++    +   L L NN +   +    F  L++L  L+L  N
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN 88

Query: 625 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
                  ++ S    L+ LY++ N+L  +IP  L                          
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL-------------------------- 121

Query: 685 LDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
             SL  L I DN I       F  L ++  + +  N L     E   F+   L  L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 744 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 803
             L   IP   D    L+ L+L HN ++      L R ++L  L L  N +  +      
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 804 N----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 859
                  LH   N  S                                          L 
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPD----------------------------------LK 264

Query: 860 LLAGLDLSCNKLVGHIPPQI-------GNLTRIQTLNLSHNNLTGTI--PLTFSNLRHIE 910
           LL  + L  N +   +                   ++L +N +      P TF  +    
Sbjct: 265 LLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 911 SLDLSYNK 918
           ++     K
Sbjct: 324 AIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.3 bits (248), Expect = 1e-22
 Identities = 55/291 (18%), Positives = 103/291 (35%), Gaps = 47/291 (16%)

Query: 635 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
             C   L+ +  ++  L   +P+ +        + +  N +      +F  L  L  L +
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 694 SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 752
            +N IS      F PL  ++++++SKN L  ++        SSLV L +  N +      
Sbjct: 86  VNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKG 141

Query: 753 WIDGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHES 810
              GL  ++ + +  N L             +L  L +S+  L G+     +    LH  
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201

Query: 811 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 870
           +N                        KI  I                 S L  L L  N+
Sbjct: 202 HN------------------------KIQAIELEDLLR---------YSKLYRLGLGHNQ 228

Query: 871 LVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           +   I       L  ++ L+L +N L+  +P    +L+ ++ + L  N ++
Sbjct: 229 I-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 2e-22
 Identities = 57/338 (16%), Positives = 115/338 (34%), Gaps = 55/338 (16%)

Query: 123 CNNSILSSVARL--SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C++  L +V +      T L L +N +   +   +F  L +L  L + +N+I  +   + 
Sbjct: 40  CSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIH-EKA 97

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 239
           +  LRKL+ L +S       N L++       SL  L +  N                N+
Sbjct: 98  FSPLRKLQKLYISK------NHLVEIPPNLPSSLVELRIHDNRIRKVPKGV--FSGLRNM 149

Query: 240 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 299
             + +  + L  S  +     F  LK                       L +L +  A++
Sbjct: 150 NCIEMGGNPLENSGFEP--GAFDGLK-----------------------LNYLRISEAKL 184

Query: 300 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 359
                   I  +   +L  L L  + +      I  + L   + L  L + +N +R    
Sbjct: 185 T------GIPKDLPETLNELHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIEN 234

Query: 360 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPV----SLEPLFN 414
             L+   +LR L +  N+L+  + +  L  L  ++ + L  N+   + V     +     
Sbjct: 235 GSLSFLPTLRELHLDNNKLS-RVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 415 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
            +        NN +     +  +        ++   + 
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 30/292 (10%)

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
           I E      +    L  L LVN+ ++          ++L+ L +S N+    IP    ++
Sbjct: 66  ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNL 121

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
             SLV   I  N +       F  +  +  +++  N L     +  A   + L +L +S 
Sbjct: 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNNNLSGKIPRWL 658
             L   I   +     L  L L+ N     I    L + S L  L L +N +       L
Sbjct: 182 AKLT-GIPKDLPE--TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237

Query: 659 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 718
             L  L+ + +  N L   +P     L  LQ++ +  NNI+    + F P+         
Sbjct: 238 SFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV--------- 287

Query: 719 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHN 768
                    G     +    + L  N +      P     ++    +   + 
Sbjct: 288 ---------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 35/288 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           L    F   Q L +L L  N I+   E       S L KL+KL +  N      L  +  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKA----FSPLRKLQKLYISKNH-----LVEIPP 119

Query: 134 --LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 191
              SSL  L +  N ++  +    F  L N+  +++  N ++N     G     KL  L 
Sbjct: 120 NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 192 LSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---S 247
           +S        KL         +LN LHL+ N   A     ++L  ++ L  L L      
Sbjct: 179 IS------EAKLTGIPKDLPETLNELHLDHNKIQA--IELEDLLRYSKLYRLGLGHNQIR 230

Query: 248 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM---RFARIALNTS 304
            +    L  +    P+L+ L +   +++ V +  G P  K L+ + +      ++ +N  
Sbjct: 231 MIENGSLSFL----PTLRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 305 FLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
                G        +SL  + +      +       +     +   N 
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPV--PYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.5 bits (225), Expect = 1e-19
 Identities = 53/263 (20%), Positives = 96/263 (36%), Gaps = 24/263 (9%)

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
            L+++  SD  +  ++P          + L  N +  +L++  F     L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI-SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN-- 804
           +         L +L  L ++ N+L  E+P  L   + L  L + DN +  +    F    
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 805 --TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 862
               +    N           +       G+ +   L     +   +       +   L 
Sbjct: 148 NMNCIEMGGNPL--------ENSGF--EPGAFDGLKLNYLRISEAKLTG-IPKDLPETLN 196

Query: 863 GLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
            L L  NK+   I  +     +++  L L HN +      + S L  +  L L  NKLS 
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 922 KIPRQLVDLNTLAIFIVAYNNLS 944
           ++P  L DL  L +  +  NN++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 70.0 bits (172), Expect = 8e-13
 Identities = 55/277 (19%), Positives = 96/277 (34%), Gaps = 35/277 (12%)

Query: 313 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT-TSLRIL 371
           +  L  L L  + +    S+I ++   PL  LQ+LYI  N L   +P    N  +SL  L
Sbjct: 77  LQHLYALVLVNNKI----SKIHEKAFSPLRKLQKLYISKNHLV-EIP---PNLPSSLVEL 128

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 431
            +  N++   +       L ++  + +  N           F+  KL        ++   
Sbjct: 129 RIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL--- 184

Query: 432 INESHSLTPKF--QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 489
                 +       L  L L  N   ++   + L    +L    L H + I    N  L 
Sbjct: 185 ----TGIPKDLPETLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGSLS 238

Query: 490 NNTKLEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGHIP------VEIGDILP 541
               L  L+L N+ L+   R+P  +   K L+ + +  NN    +       V  G    
Sbjct: 239 FLPTLRELHLDNNKLS---RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRA 294

Query: 542 SLVYFNISMNALDGSI--PSSFGNVIFLQFLDLSNNK 576
                ++  N +      P++F  V     +   N K
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 37/216 (17%), Positives = 63/216 (29%), Gaps = 61/216 (28%)

Query: 731 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
           F C   L  +  S   L  ++P  I      + L+L +N++          L  L  L L
Sbjct: 29  FGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVL 85

Query: 790 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 849
            +N +  +    F                                               
Sbjct: 86  VNNKISKIHEKAFSP--------------------------------------------- 100

Query: 850 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
                   L  L  L +S N LV  IPP +   + +  L +  N +       FS LR++
Sbjct: 101 --------LRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 910 ESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLS 944
             +++  N L +        D   L    ++   L+
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (294), Expect = 3e-27
 Identities = 75/379 (19%), Positives = 114/379 (30%), Gaps = 103/379 (27%)

Query: 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 601
                N+  + L  ++P        +  L + +N LT  +P         L  L +S N 
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPA--HITTLVIPDNNLT-SLPALPP----ELRTLEVSGNQ 92

Query: 602 LKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661
           L   +      L  L        H            S L  L++  N L+  +P     L
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLT-SLPVLPPGL 143

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 721
           + L    +  N L   +P        L  L   +N ++ SLP                  
Sbjct: 144 QELS---VSDNQLAS-LPALPS---ELCKLWAYNNQLT-SLPMLP--------------- 180

Query: 722 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 781
                       S L  L +S N L  S+P      S+L  L   +N L   +P      
Sbjct: 181 ------------SGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNRLT-SLPALPS-- 221

Query: 782 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILE 840
             L+ L +S N L  L     +   L  S N  +S P                       
Sbjct: 222 -GLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM---------------------- 258

Query: 841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 900
                           + S L  L +  N+L   +P  + +L+   T+NL  N L+    
Sbjct: 259 ----------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS---E 298

Query: 901 LTFSNLRHIESLDLSYNKL 919
            T   LR I S       +
Sbjct: 299 RTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (286), Expect = 3e-26
 Identities = 74/352 (21%), Positives = 119/352 (33%), Gaps = 47/352 (13%)

Query: 469 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNF 528
                +     +   P+ L  +   +  L + +++L     LP      LR L+VS N  
Sbjct: 42  NAVLNVGE-SGLTTLPDCLPAH---ITTLVIPDNNLT---SLP-ALPPELRTLEVSGNQL 93

Query: 529 QGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 588
              +PV     L  L  F+  +  L             L  L +  N+LT  +P      
Sbjct: 94  T-SLPVLPPG-LLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT-SLPVLPP-- 141

Query: 589 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 648
              L+ LS+S+N L     S       L  L    N     +P   S    L+ L +++N
Sbjct: 142 --GLQELSVSDNQLA----SLPALPSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDN 191

Query: 649 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 708
            L+  +P     L  L       N L   +P        L+ L +S N ++ SLP    P
Sbjct: 192 QLA-SLPTLPSELYKLW---AYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL--P 240

Query: 709 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 768
             +K++ +S N L   L        S L++L +  N L   +P+ +  LS  + +NL  N
Sbjct: 241 SELKELMVSGNRL-TSLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294

Query: 769 NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 820
            L       L  +                  S    T        +      
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 5e-26
 Identities = 72/354 (20%), Positives = 112/354 (31%), Gaps = 98/354 (27%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
              L++  + LT  +PD L     ++  L + +N+L     S       LR L + GN  
Sbjct: 42  NAVLNVGESGLT-TLPDCL---PAHITTLVIPDNNLT----SLPALPPELRTLEVSGNQL 93

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
              +P        L        +L    P     L  L    +  N L   +PV      
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKLW---IFGNQLTS-LPVL---PP 141

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
            LQ L +SDN ++ SLP+                             S L  L    N L
Sbjct: 142 GLQELSVSDNQLA-SLPALP---------------------------SELCKLWAYNNQL 173

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
             S+P      S L  L+++ N L   +P     L +L   +    +L  L         
Sbjct: 174 T-SLPM---LPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGL---KE 225

Query: 807 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 866
           L  S N                        ++  +                 S L  L +
Sbjct: 226 LIVSGN------------------------RLTSLPVL-------------PSELKELMV 248

Query: 867 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           S N+L   +P     L     L++  N LT  +P +  +L    +++L  N LS
Sbjct: 249 SGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  106 bits (266), Expect = 9e-24
 Identities = 76/430 (17%), Positives = 129/430 (30%), Gaps = 105/430 (24%)

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
           ++    +     L+V  +     +P  +      +    I  N L  S+P+       L+
Sbjct: 33  KMRACLNNGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPALPPE---LR 84

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
            L++S N+LT  +P       + L   S     L             L  L + GN    
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQL-T 134

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
            +P        L+ L +++N L+  +P     L  L       N L   +P+       L
Sbjct: 135 SLPVLPP---GLQELSVSDNQLA-SLPALPSELCKLW---AYNNQLTS-LPML---PSGL 183

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           Q L +SDN ++ SLP+                             S L  L    N L  
Sbjct: 184 QELSVSDNQLA-SLPTLP---------------------------SELYKLWAYNNRLT- 214

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 808
           S+P      S L  L ++ N L   +P      ++L+ L +S N L  L        +L 
Sbjct: 215 SLPALP---SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLS 267

Query: 809 ESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
              N  +  P+                      +                LS    ++L 
Sbjct: 268 VYRNQLTRLPE---------------------SLIH--------------LSSETTVNLE 292

Query: 868 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS-YNKLSGKIPRQ 926
            N L       +  +T           +        S  R   +L L+  + L      +
Sbjct: 293 GNPLSERTLQALREITS---APGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

Query: 927 LVDLNTLAIF 936
               +   +F
Sbjct: 350 PAPADRWHMF 359

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 3e-20
 Identities = 63/360 (17%), Positives = 114/360 (31%), Gaps = 67/360 (18%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERL-SRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 140
              + +L +  NN         L  L +   +L+ L++ GN    S+      L  L+  
Sbjct: 60  PAHITTLVIPDNN---------LTSLPALPPELRTLEVSGNQL-TSLPVLPPGLLELSIF 109

Query: 141 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 200
                 L            S L +L I  N++ ++ V         L+ L +S       
Sbjct: 110 SNPLTHLP--------ALPSGLCKLWIFGNQLTSLPVL-----PPGLQELSVS------D 150

Query: 201 NKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL-HNFTNLEYLTLDDSSLHISLLQSIGS 259
           N+L         L  L   +N  T        L    + L+ L++ D+      L S+ +
Sbjct: 151 NQLASLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVSDNQ-----LASLPT 198

Query: 260 IFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 319
           +   L  L      +  + +         L+ L        ++ + L  +      LK L
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPS-----GLKELI-------VSGNRLTSLPVLPSELKEL 246

Query: 320 SLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 379
            +SG     N    L         L  L +  N L   LP  L + +S   +++  N L+
Sbjct: 247 MVSG-----NRLTSLPMLPS---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 380 GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 439
              +   L  +TS      S    R  ++       ++     A +  +     E     
Sbjct: 298 -ERTLQALREITSAPG--YSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 95.3 bits (237), Expect = 3e-20
 Identities = 69/413 (16%), Positives = 115/413 (27%), Gaps = 89/413 (21%)

Query: 287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 346
                L++  + +   T+    +      +  L +       N+   L         L+ 
Sbjct: 40  NGNAVLNVGESGL---TTLPDCLP---AHITTLVIPD-----NNLTSLPALPP---ELRT 85

Query: 347 LYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-I 405
           L +  N L  SLP        L I       L            + + +L +  N    +
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTSL 136

Query: 406 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSLSLSSNYGDSVTFPKFLY 464
           PV          L+     +N++        SL     +L  L   +N            
Sbjct: 137 PVLP------PGLQELSVSDNQLA-------SLPALPSELCKLWAYNN------------ 171

Query: 465 HQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVS 524
                          +   P       + L+ L + ++ LA    LP      L  L   
Sbjct: 172 --------------QLTSLPMLP----SGLQELSVSDNQLA---SLP-TLPSELYKLWAY 209

Query: 525 NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 584
           NN     +P         L    +S N L  S+P        L+ L +S N+LT  +P  
Sbjct: 210 NNRLT-SLPALPS----GLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLT-SLPML 259

Query: 585 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLY 644
            +     L  LS+  N L   +   +  L +   + LEGN    E      +  +    Y
Sbjct: 260 PS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAPGY 313

Query: 645 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 697
                                H+    + L      E    D   +    DN 
Sbjct: 314 SGPIIRFDMAGASAPRETRALHLAAA-DWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 93.8 bits (233), Expect = 8e-20
 Identities = 57/322 (17%), Positives = 111/322 (34%), Gaps = 65/322 (20%)

Query: 132 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 191
              +    L++  + L  ++        +++  L I DN + ++          +L++L+
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPD---CLPAHITTLVIPDNNLTSLPAL-----PPELRTLE 87

Query: 192 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 251
           +SG  +     L         L+       +  A           + L  L +  + L  
Sbjct: 88  VSGNQLTS---LPVLPPGLLELSIFSNPLTHLPALP---------SGLCKLWIFGNQLT- 134

Query: 252 SLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 311
               S+  + P L+ LS+S  ++  + +         L   + +          L  +  
Sbjct: 135 ----SLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQ----------LTSLPM 178

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
               L+ LS+S      N    L         L +L+  NN L  SLP      + L+ L
Sbjct: 179 LPSGLQELSVSD-----NQLASLPTLPS---ELYKLWAYNNRLT-SLPALP---SGLKEL 226

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEING 430
            VS N+LT S+        + ++EL +S N    +P+        S L       N++  
Sbjct: 227 IVSGNRLT-SLPVL----PSELKELMVSGNRLTSLPMLP------SGLLSLSVYRNQLTR 275

Query: 431 EINESHSLTPKFQLKSLSLSSN 452
                  L+      +++L  N
Sbjct: 276 LPESLIHLS---SETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 87.6 bits (217), Expect = 7e-18
 Identities = 58/263 (22%), Positives = 90/263 (34%), Gaps = 66/263 (25%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           C  +   +L++ ++ ++ +LP C  P  I  + +  N L   L          L TL++S
Sbjct: 37  CLNNGNAVLNVGESGLT-TLPDCL-PAHITTLVIPDNNLT-SLPA----LPPELRTLEVS 89

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
            N L  S+P    GL +LS  +    +L           + L  L +  N L  L     
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVLPP 141

Query: 803 DNTTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861
               L  S N  +S P  P +                                      L
Sbjct: 142 GLQELSVSDNQLASLPALPSE--------------------------------------L 163

Query: 862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
             L    N+L   +P     L   Q L++S N L  ++P   S L     L    N+L+ 
Sbjct: 164 CKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTLPSELY---KLWAYNNRLT- 214

Query: 922 KIPRQLVDLNTLAIFIVAYNNLS 944
            +P     L  L   IV+ N L+
Sbjct: 215 SLPALPSGLKEL---IVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.3 bits (185), Expect = 5e-14
 Identities = 73/451 (16%), Positives = 133/451 (29%), Gaps = 94/451 (20%)

Query: 212 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
               L++  +  T   T    L    ++  L + D++L      S+ ++ P L+ L +SG
Sbjct: 41  GNAVLNVGESGLT---TLPDCL--PAHITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 272 CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSS 331
            ++  +      P    L         +                L  L + G+ L +   
Sbjct: 91  NQLTSL--PVLPPGLLELSIFSNPLTHLP----------ALPSGLCKLWIFGNQLTSLPV 138

Query: 332 RILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLT 391
                       LQEL + +N L  SLP   +    L  L    NQLT S+        +
Sbjct: 139 LP--------PGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLT-SLPML----PS 181

Query: 392 SIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 450
            ++EL +S+N    +P     L    KL  ++ +   +    +          LK L +S
Sbjct: 182 GLQELSVSDNQLASLPTLPSEL---YKLWAYNNRLTSLPALPS---------GLKELIVS 229

Query: 451 SNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL 510
            N                           +   P       ++L+ L +  + L     L
Sbjct: 230 GN--------------------------RLTSLPVLP----SELKELMVSGNRLT---SL 256

Query: 511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 570
           P+     L  L V  N     +P  +   L S    N+  N L      +      +   
Sbjct: 257 PMLPSG-LLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALRE---ITSA 310

Query: 571 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI 630
              +  +        +           + + L              RW +          
Sbjct: 311 PGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPAD--RWHMFGQEDNADAF 368

Query: 631 PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661
              L + S  +  ++ +     +I  WL  L
Sbjct: 369 SLFLDRLSETEN-FIKDAGFKAQISSWLAQL 398

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.2 bits (169), Expect = 4e-12
 Identities = 54/349 (15%), Positives = 98/349 (28%), Gaps = 83/349 (23%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 137
           L     +L        ++            +  S L KL +      N + S       L
Sbjct: 99  LPPGLLELSIFSNPLTHLP-----------ALPSGLCKLWIF----GNQLTSLPVLPPGL 143

Query: 138 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGI 197
             L +S N L  S+ A      S L +L   +N++ ++ +         L+ L +S    
Sbjct: 144 QELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLPML-----PSGLQELSVS---- 189

Query: 198 RDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 257
              N+L         L  L   +N     LT+   L   + L+ L +  +      L S+
Sbjct: 190 --DNQLASLPTLPSELYKLWAYNNR----LTSLPAL--PSGLKELIVSGNR-----LTSL 236

Query: 258 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 317
             +   LK L +SG                                  L  +      L 
Sbjct: 237 PVLPSELKELMVSGN--------------------------------RLTSLPMLPSGLL 264

Query: 318 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 377
            LS+       N    L + L  L+    + ++ N L             +         
Sbjct: 265 SLSVYR-----NQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQ--ALREITSAPGYSGP 316

Query: 378 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           +      +          L L+   + +P          +  +F  ++N
Sbjct: 317 II-RFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
            +  A L++  + L   +P  +     I TL +  NNLT ++P     LR   +L++S N
Sbjct: 39  NNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 918 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT 951
           +L+  +P     L  L+IF     +L        
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 2e-07
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 53/180 (29%)

Query: 776 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNN-NSSPDKPFKTSFSISGPQGS 833
           ++ C  N   +L++ ++ L  L      + TTL    NN  S P                
Sbjct: 34  MRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--------------- 78

Query: 834 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 893
                                  +   L  L++S N+L   +P     L  +   +    
Sbjct: 79  -----------------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 114

Query: 894 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 953
           +L        +    +  L +  N+L+  +P     L  L    V+ N L+  +P   ++
Sbjct: 115 HLP-------ALPSGLCKLWIFGNQLT-SLPVLPPGLQEL---SVSDNQLA-SLPALPSE 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (292), Expect = 4e-27
 Identities = 88/473 (18%), Positives = 177/473 (37%), Gaps = 37/473 (7%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
              + L +  N +       ++  + LR+L +S N++  S+     +    +E L +S+N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEIN--GEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
             +   ++      + L+  D   N+ +      E  +LT   +L  L LS+     +  
Sbjct: 111 RLQ---NI-SCCPMASLRHLDLSFNDFDVLPVCKEFGNLT---KLTFLGLSAAKFRQLDL 163

Query: 460 PKFLYHQHELKEAELSHIKM-IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 518
               +        +L    +  GE  +  + N T L  ++  N   +    + +++   L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223

Query: 519 RFLDVS-NNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF-----LQFLDL 572
           +  ++  N+     +   + ++       N+++  ++ +   S     F     +++L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283

Query: 573 SNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
            N  +T     E   +      +L    + N        +       +   +L  +    
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
                    SS   L    N  +  + +    LK LQ +++ +N L+           ++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNM 402

Query: 689 QILDISDNNISGSLPS------CFYPLSIKQVHLSKNMLHGQLKEGTFFNC--SSLVTLD 740
             L+  D +++ SL S      C +  SI  ++LS NML G     + F C    +  LD
Sbjct: 403 SSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTG-----SVFRCLPPKVKVLD 456

Query: 741 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           L  N +  SIP  +  L  L  LN+A N L+        RL  LQ + L DN 
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  113 bits (284), Expect = 4e-26
 Identities = 90/474 (18%), Positives = 171/474 (36%), Gaps = 55/474 (11%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
            +  L+ L LS + + +    +          L+ L + +N L+ ++        SLR L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLF----NQDLEYLDVSHNRLQ-NISC--CPMASLRHL 126

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL-FNHSKLKIFDAKNNEING 430
           D+SFN            +LT +  L LS   FR    L+ L   H  L          + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR---QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 431 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL--- 487
           +  E+ SL        L L  +     +    +   + L   +LS+IK+  E    L   
Sbjct: 184 KGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTF 241

Query: 488 ---LENNTKLEFLYLVNDSLAGPFRLPIHS---HKRLRFLDVSNNNFQGHIPVEIGDI-- 539
              L     L  + L +        + +      + + +L++ N      I  E      
Sbjct: 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSE 301

Query: 540 --LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
             L SL+  ++       S  + +     +    LS +     I         +  FL+ 
Sbjct: 302 TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFLNF 360

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 657
           + N     +F    +L+ L+ L+L+ N       ++  K + +                 
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGL-----KNFFKVALM----------------- 398

Query: 658 LGNLKGLQHIVMPKNHLE-GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 716
             N+  L+ + +  N L            +S+ +L++S N ++GS+  C  P  +K + L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVKVLDL 457

Query: 717 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNN 769
             N +   + +    +  +L  L+++ N L  S+PD   D L+ L ++ L  N 
Sbjct: 458 HNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (257), Expect = 9e-23
 Identities = 71/428 (16%), Positives = 153/428 (35%), Gaps = 34/428 (7%)

Query: 512 IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLD 571
           I     LR L +S+N  +  +   +      L Y ++S N L  +I      +  L+ LD
Sbjct: 72  ISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLRHLD 127

Query: 572 LSNNKLT----GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHF 626
           LS N        +   +L      L FL LS    +      +  L  +   L L   H 
Sbjct: 128 LSFNDFDVLPVCKEFGNL----TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 627 VGEIPQSLS--KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP----IPV 680
            G   +SL     + L  ++  N+  S ++   +  L  LQ   +  N            
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 681 EFCRLDSLQILDISDNNISG----SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS-- 734
           E  R  +L  + +     +      L   F+P  ++ +++    +  ++    F      
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 735 --SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
             SL+   +       S        ++++   L+ ++      +     +    L+ + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 793 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTKNIAY 851
                +          ++           K  F ++    ++   + L++   +  + AY
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQR---NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 911
                    +  L+LS N L G +   +    +++ L+L +N +  +IP   ++L+ ++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 912 LDLSYNKL 919
           L+++ N+L
Sbjct: 478 LNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 89/517 (17%), Positives = 167/517 (32%), Gaps = 91/517 (17%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           L     +   +L  L LS N I   + +  +        L+ LD+  N      L ++  
Sbjct: 67  LRMPDISFLSELRVLRLSHNRIR--SLDFHV--FLFNQDLEYLDVSHNR-----LQNISC 117

Query: 132 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 191
             ++SL  L LS N        KEF +L+ L  L ++  +   +++            LD
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 192 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 251
           L    I+ G        S    NT  L       +L + Q   +   L +L L +  L+ 
Sbjct: 178 LVSYHIKGG-----ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 252 SLLQSIGSIF------PSLKNLSMSGCEV--NGVLSGQGFPHFKSLEHLDMRFARIA--L 301
              Q + +        P+L N+++   E      +    F   + +E+L++    I   +
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292

Query: 302 NTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWC 361
           +         ++ SL    +       +   +        A +    +  +D       C
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV----FAEMNIKMLSISDTPFIHMVC 348

Query: 362 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 421
             + +S   L+ + N  T          L  ++ L L  N  +   +   +   +K    
Sbjct: 349 PPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK---NFFKVALMTK---- 400

Query: 422 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 481
                                 + SL       +S+                        
Sbjct: 401 ---------------------NMSSLETLDVSLNSLNS---------------------H 418

Query: 482 EFPNWLLENNTKLEFLYLVNDSL-AGPF-RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
            +          +  L L ++ L    F  LP      ++ LD+ NN     IP ++   
Sbjct: 419 AYDR-TCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIM-SIPKDV-TH 471

Query: 540 LPSLVYFNISMNALDGSIP-SSFGNVIFLQFLDLSNN 575
           L +L   N++ N L  S+P   F  +  LQ++ L +N
Sbjct: 472 LQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.9 bits (210), Expect = 4e-17
 Identities = 63/379 (16%), Positives = 113/379 (29%), Gaps = 26/379 (6%)

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFV 627
            +D SN  LT  +P  L       + LSLS NS+   +       L  LR L L  N   
Sbjct: 35  MVDYSNRNLT-HVPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRI- 88

Query: 628 GEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG-PIPVEFCRL 685
             +   +      L+ L +++N L   I      +  L+H+ +  N  +  P+  EF  L
Sbjct: 89  RSLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLRHLDLSFNDFDVLPVCKEFGNL 145

Query: 686 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
             L  L +S              L +  + L     H +  E       +   L L ++ 
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205

Query: 746 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 805
            +         ++ L HL L++  L  E   +L           +  N+           
Sbjct: 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265

Query: 806 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD 865
           ++                  +I          I E  +       + Y    L  L    
Sbjct: 266 SV----KLFQFFWPRPVEYLNIYN------LTITERIDREE----FTYSETALKSLMIEH 311

Query: 866 LSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 925
           +     +            +    LS ++      +   +      L+ + N  +  + +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 926 QLVDLNTLAIFIVAYNNLS 944
               L  L   I+  N L 
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 84.2 bits (208), Expect = 8e-17
 Identities = 67/421 (15%), Positives = 144/421 (34%), Gaps = 67/421 (15%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
           D+ P     ++S N++          +  L+ L LS+N++   +  H+ +   +LE+L +
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDV 107

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 657
           S+N L+        ++                   S    +SL+ L L+ N+        
Sbjct: 108 SHNRLQ--------NI-------------------SCCPMASLRHLDLSFNDFD------ 134

Query: 658 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
                              P+  EF  L  L  L +S              L +  + L 
Sbjct: 135 -----------------VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 777
               H +  E       +   L L ++  +         ++ L HL L++  L  E   +
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 778 LCRLNQ------------LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 825
           L                 LQ ++ +      L    +     + +  N +  ++  +  F
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 826 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 885
           + S  + +++  ++E  +      +      V + +    LS +           + +  
Sbjct: 298 TYS--ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 886 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNNL 943
             LN + N  T ++    S L+ +++L L  N L    K+     ++++L    V+ N+L
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 944 S 944
           +
Sbjct: 416 N 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 34/233 (14%)

Query: 45  QWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNI----AGCAE 100
           + +  E + +   +  L +    +  + +   +L++ F ++    LS ++       C  
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP- 349

Query: 101 NEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQG-SIDAKEFDSL 159
                     S    L+   N+  +S+    + L  L +L L  N L+     A    ++
Sbjct: 350 -------PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 160 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF----PSLNT 215
           S+LE LD++ N +++    R       +  L+LS       N L  +   F    P +  
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLS------SNML--TGSVFRCLPPKVKV 454

Query: 216 LHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNL 267
           L L +N   +     +++ +   L+ L +  +      L+S+   +F  L +L
Sbjct: 455 LDLHNNRIMS---IPKDVTHLQALQELNVASNQ-----LKSVPDGVFDRLTSL 499

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (283), Expect = 2e-26
 Identities = 58/242 (23%), Positives = 97/242 (40%), Gaps = 13/242 (5%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
              +      L  E+PD ++    N   L+L  N ++  I    F  LR+L  L L  NH
Sbjct: 45  FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 684
                  + +  ++L  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNR 158

Query: 685 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           + SL+ LD+ +      +    F  L +++ ++L+   L    +         L  LDLS
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLS 215

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
            N+L+   P    GL  L  L +  + ++         L  L  ++L+ NNL  L    F
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 803 DN 804
             
Sbjct: 276 TP 277

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  110 bits (276), Expect = 2e-25
 Identities = 59/260 (22%), Positives = 94/260 (36%), Gaps = 30/260 (11%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
            I  +    N+  N +     +SF ++  L+ L LS N +   I         NL  L L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119

Query: 598 SNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 656
            +N L   I +  F  L  L+ L L  N        + ++  SL+ L L        I  
Sbjct: 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 657 -WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 715
                L  L+++ +   +L   IP     L  L  LD+S N++S                
Sbjct: 179 GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS---------------- 220

Query: 716 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 775
                    ++ G+F     L  L +  + +     +  D L  L  +NLAHNNL     
Sbjct: 221 --------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272

Query: 776 IQLCRLNQLQLLDLSDNNLH 795
                L+ L+ + L  N  +
Sbjct: 273 DLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.8 bits (249), Expect = 3e-22
 Identities = 60/287 (20%), Positives = 102/287 (35%), Gaps = 47/287 (16%)

Query: 638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 697
           +    +     NL  ++P  +      + + + +N ++      F  L  L+IL +S N+
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 698 ISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 756
           I       F  L ++  + L  N L   +  G F   S L  L L  N +        + 
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 757 LSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE---SYN 812
           +  L  L+L        +       L+ L+ L+L+  NL   IP+      L E   S N
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGN 217

Query: 813 NNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
           + S+     F+                                   L  L  L +  +++
Sbjct: 218 HLSAIRPGSFQG----------------------------------LMHLQKLWMIQSQI 243

Query: 872 VGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
              I      NL  +  +NL+HNNLT      F+ L H+E + L +N
Sbjct: 244 Q-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 34/251 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSS 136
                 L+L  N I     N        L  L+ L L  N      + ++       L++
Sbjct: 63  STNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNH-----IRTIEIGAFNGLAN 113

Query: 137 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 196
           L +L L  N L  +I    F  LS L+EL + +N I+++  S  +  +  L+ LDL    
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLG--- 168

Query: 197 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 252
             +  +L   S G+F    +L  L+L   N    L     L     L+ L L  + L  +
Sbjct: 169 --ELKRLSYISEGAFEGLSNLRYLNLAMCN----LREIPNLTPLIKLDELDLSGNHLS-A 221

Query: 253 LLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES 312
           +          L+ L M   ++  V+    F + +SL  +++    +   T     +   
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL---TLLPHDLFTP 277

Query: 313 MPSLKYLSLSG 323
           +  L+ + L  
Sbjct: 278 LHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 62/285 (21%), Positives = 107/285 (37%), Gaps = 49/285 (17%)

Query: 122 LCNNSILSSV-ARLS-SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR 179
           +C    L  V   +S +   L+L  N +Q  I    F  L +LE L ++ N I  +E   
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIE-IG 106

Query: 180 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 239
            + GL  L +L+L        N+L              + +  F             + L
Sbjct: 107 AFNGLANLNTLELF------DNRL------------TTIPNGAF----------VYLSKL 138

Query: 240 EYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
           + L L   +  I  + S    F   PSL+ L +   +    +S   F    +L +L++  
Sbjct: 139 KELWL--RNNPIESIPS--YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194

Query: 297 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG 356
             +    +        +  L  L LSG+ L    S I       L HLQ+L++  + ++ 
Sbjct: 195 CNLREIPNL-----TPLIKLDELDLSGNHL----SAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 357 SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
                  N  SL  ++++ N LT  +       L  +E + L +N
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 61/289 (21%), Positives = 110/289 (38%), Gaps = 66/289 (22%)

Query: 687 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
           + ++L++ +N I     + F  L  ++ + LS+N +   ++ G F   ++L TL+L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123

Query: 746 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDNN-LHGLIPSCFD 803
           L          LS+L  L L +N +E  +P     R+  L+ LDL +   L  +    F+
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182

Query: 804 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 863
                                                                 LS L  
Sbjct: 183 G-----------------------------------------------------LSNLRY 189

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           L+L+   L   IP  +  L ++  L+LS N+L+   P +F  L H++ L +  +++    
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 924 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 969
                +L +L    +A+NNL+  +P     F   +         NP+ C
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 53/223 (23%), Positives = 80/223 (35%), Gaps = 38/223 (17%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAEN--EGLERLSRL------------------SKL 113
           +  + F   + LE L LS N+I         GL  L+ L                  SKL
Sbjct: 79  IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138

Query: 114 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
           K+L LR N   +    +  R+ SL  L L        I    F+ LSNL  L++    + 
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLT 228
            +        L KL  LDLS      GN L  ++  GSF     L  L +  +       
Sbjct: 199 EIP---NLTPLIKLDELDLS------GNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER 248

Query: 229 TTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
                 N  +L  + L  ++L   L   + +    L+ + +  
Sbjct: 249 NA--FDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 31/188 (16%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS--- 129
            +    F    +L+ L L  N I            +R+  L++LDL        +     
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYA----FNRIPSLRRLDLGEL---KRLSYISE 178

Query: 130 -SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
            +   LS+L  L+L+   L+  I       L  L+ELD++ N +  +     ++GL  L+
Sbjct: 179 GAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQ 234

Query: 189 SLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQE--LHNFTNLEYL 242
            L +        +++      +F    SL  ++L  NN    LT           +LE +
Sbjct: 235 KLWMIQ------SQIQVIERNAFDNLQSLVEINLAHNN----LTLLPHDLFTPLHHLERI 284

Query: 243 TLDDSSLH 250
            L  +  +
Sbjct: 285 HLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 48/274 (17%), Positives = 93/274 (33%), Gaps = 45/274 (16%)

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 316
            I  + + L++   ++  +     F H + LE L +    I      +F       + +L
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNS-FKHLRHLEILQLSRNHIRTIEIGAF-----NGLANL 114

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 375
             L L  + L    + I +     L+ L+EL++ NN +     +      SLR LD+   
Sbjct: 115 NTLELFDNRL----TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 376 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 435
            +L+  IS      L+++  L L+  + R    +  L    KL   D   N +       
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHL--SAIRP 224

Query: 436 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 495
            S      L+ L +  +                        I++I        +N   L 
Sbjct: 225 GSFQGLMHLQKLWMIQS-----------------------QIQVI---ERNAFDNLQSLV 258

Query: 496 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 529
            + L +++L             L  + + +N + 
Sbjct: 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 2e-11
 Identities = 40/213 (18%), Positives = 63/213 (29%), Gaps = 58/213 (27%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           ++   L+L  N +     +    L  L  L L+ N++          L  L  L+L DN 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
           L  +    F                                                   
Sbjct: 124 LTTIPNGAFVY------------------------------------------------- 134

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIES 911
               LS L  L L  N +   IP      +  ++ L+L        I    F  L ++  
Sbjct: 135 ----LSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 912 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
           L+L+   L  +IP  L  L  L    ++ N+LS
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
            +P  I   T  + LNL  N +      +F +LRH+E L LS N +          L  L
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114

Query: 934 AIFIVAYNNLS 944
               +  N L+
Sbjct: 115 NTLELFDNRLT 125

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  111 bits (280), Expect = 5e-26
 Identities = 58/257 (22%), Positives = 103/257 (40%), Gaps = 12/257 (4%)

Query: 517 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576
           +   +  +       +P     I  +  Y N+  N +      +F ++  L+ L L  N 
Sbjct: 55  QFSKVVCTRRGLS-EVP---QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS 635
           +  +I         +L  L L +N L   I S  F  L  LR L L  N        + +
Sbjct: 111 IR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 636 KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 694
           +  SL  L L        I       L  L+++ +   +++  +P     L  L+ L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMS 226

Query: 695 DNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
            N+     P  F+ L S+K++ +  + +   ++   F   +SLV L+L++N L+    D 
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285

Query: 754 IDGLSQLSHLNLAHNNL 770
              L  L  L+L HN  
Sbjct: 286 FTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  111 bits (279), Expect = 6e-26
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 13/242 (5%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
              +  +   L+ E+P  +     N  +L+L  N+++  I +  F  L +L  L L  N 
Sbjct: 56  FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCR 684
                  + +  +SL  L L +N L+         L  L+ + +  N +E  IP   F R
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNR 169

Query: 685 LDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           + SL  LD+ +      +    F  L ++K ++L    +              L  L++S
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMS 226

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
            N+     P    GLS L  L + ++ +          L  L  L+L+ NNL  L    F
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 803 DN 804
             
Sbjct: 287 TP 288

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 60/254 (23%), Positives = 95/254 (37%), Gaps = 40/254 (15%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSS 136
                 L+L  NNI     +        L  L+ L L  N      +  +       L+S
Sbjct: 74  PSNTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNS-----IRQIEVGAFNGLAS 124

Query: 137 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 196
           L +L L  N L   I +  F+ LS L EL + +N I+++  S  +  +  L  LDL    
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLG--- 179

Query: 197 IRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 252
             +  KL   S G+F    +L  L+L   N    +     L     LE L +  S  H  
Sbjct: 180 --ELKKLEYISEGAFEGLFNLKYLNLGMCN----IKDMPNLTPLVGLEELEM--SGNHFP 231

Query: 253 LLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 309
            ++     F    SLK L +   +V+ ++    F    SL  L++    +   +S    +
Sbjct: 232 EIRP--GSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNL---SSLPHDL 285

Query: 310 GESMPSLKYLSLSG 323
              +  L  L L  
Sbjct: 286 FTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 61/282 (21%), Positives = 106/282 (37%), Gaps = 43/282 (15%)

Query: 122 LCNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR 179
           +C    LS V   + S+   L+L  N +Q  I A  F  L +LE L +  N I  +E   
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIE-VG 117

Query: 180 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 239
            + GL  L +L+L        N L              + S  F             + L
Sbjct: 118 AFNGLASLNTLELF------DNWL------------TVIPSGAF----------EYLSKL 149

Query: 240 EYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARI 299
             L L ++ +  S+     +  PSL  L +   +    +S   F    +L++L++    I
Sbjct: 150 RELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 300 ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP 359
               +        +  L+ L +SG+        I       L+ L++L++ N+ +     
Sbjct: 209 KDMPNL-----TPLVGLEELEMSGNHF----PEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 360 WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
                  SL  L+++ N L+ S+       L  + EL L +N
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 92.9 bits (231), Expect = 6e-20
 Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 64/288 (22%)

Query: 687 SLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
           + + L++ +NNI       F  L  ++ + L +N +  Q++ G F   +SL TL+L  N+
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134

Query: 746 LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDN 804
           L        + LS+L  L L +N +E        R+  L  LDL +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
                                                                L  L  L
Sbjct: 195 -----------------------------------------------------LFNLKYL 201

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
           +L    +   +P  +  L  ++ L +S N+     P +F  L  ++ L +  +++S    
Sbjct: 202 NLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 925 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 969
                L +L    +A+NNLS  +P     F             NP+ C
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDL--FTPLRYLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 5e-16
 Identities = 67/252 (26%), Positives = 97/252 (38%), Gaps = 44/252 (17%)

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPV 534
           I         +   LE L L  +S+     G F  L       L  L++ +N     IP 
Sbjct: 87  IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA-----SLNTLELFDNWLT-VIPS 140

Query: 535 EIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVNL 592
              + L  L    +  N +  SIPS +F  V  L  LDL    KL   I +       NL
Sbjct: 141 GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNL 198

Query: 593 EFLSLSNNSLKG-HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 651
           ++L+L   ++K     +    L  L  L + GNHF    P S    SSLK L++ N+ +S
Sbjct: 199 KYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 652 GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-S 710
             I R                         F  L SL  L+++ NN+S      F PL  
Sbjct: 256 -LIERNA-----------------------FDGLASLVELNLAHNNLSSLPHDLFTPLRY 291

Query: 711 IKQVHLSKNMLH 722
           + ++HL  N  +
Sbjct: 292 LVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.8 bits (197), Expect = 1e-15
 Identities = 52/228 (22%), Positives = 81/228 (35%), Gaps = 48/228 (21%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAEN--EGLERLSRL------------------SKL 113
           + A  F     LE L L  N+I         GL  L+ L                  SKL
Sbjct: 90  IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149

Query: 114 KKLDLRGNLCNNSILSSV-----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIN 168
           ++L LR N      + S+      R+ SL  L L        I    F+ L NL+ L++ 
Sbjct: 150 RELWLRNNP-----IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 169 DNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNF 223
              I ++        L  L+ L++S      GN    ++  GSF    SL  L + ++  
Sbjct: 205 MCNIKDMPN---LTPLVGLEELEMS------GNHFPEIRP-GSFHGLSSLKKLWVMNSQV 254

Query: 224 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSG 271
           +             +L  L L  ++L  SL   + +    L  L +  
Sbjct: 255 SLIERNA--FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 31/188 (16%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS--- 129
            + +  F    +L  L L  N I            +R+  L +LDL        +     
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYA----FNRVPSLMRLDLGEL---KKLEYISE 189

Query: 130 -SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
            +   L +L  L+L    ++  +       L  LEEL+++ N    +     + GL  LK
Sbjct: 190 GAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIR-PGSFHGLSSLK 245

Query: 189 SLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQE--LHNFTNLEYL 242
            L +        +++      +F    SL  L+L  NN    L++           L  L
Sbjct: 246 KLWVMN------SQVSLIERNAFDGLASLVELNLAHNN----LSSLPHDLFTPLRYLVEL 295

Query: 243 TLDDSSLH 250
            L  +  +
Sbjct: 296 HLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 45/217 (20%), Positives = 68/217 (31%), Gaps = 42/217 (19%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           S+   L+L  N +     D    L  L  L L  N++          L  L  L+L DN 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 794 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 848
           L  +    F+       L    N   S P   F                           
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR------------------------- 169

Query: 849 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 907
                    +  L  LDL   K + +I       L  ++ LNL   N+   +P   + L 
Sbjct: 170 ---------VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 908 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
            +E L++S N      P     L++L    V  + +S
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 4e-13
 Identities = 49/277 (17%), Positives = 90/277 (32%), Gaps = 51/277 (18%)

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSL 316
            I  + + L++    +  + +   F H   LE L +    I      +F       + SL
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAF-----NGLASL 125

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVS-F 375
             L L  + L    + I       L+ L+EL++ NN +     +      SL  LD+   
Sbjct: 126 NTLELFDNWL----TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181

Query: 376 NQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINES 435
            +L   IS      L +++ L L   + +    +  L     L+  +   N    EI   
Sbjct: 182 KKLE-YISEGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFP-EI-RP 235

Query: 436 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 495
            S      LK L + ++                           +        +    L 
Sbjct: 236 GSFHGLSSLKKLWVMNS--------------------------QVSLIERNAFDGLASLV 269

Query: 496 FLYLVNDSLAGPFRLP---IHSHKRLRFLDVSNNNFQ 529
            L L +++L+    LP       + L  L + +N + 
Sbjct: 270 ELNLAHNNLS---SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 59/213 (27%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           +    +  +   L+  +P  I   S   +LNL  NN++         L+ L++L L  N+
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
           +  +    F+                                                  
Sbjct: 111 IRQIEVGAFNG------------------------------------------------- 121

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 912
               L+ L  L+L  N L   IP      L++++ L L +N +       F+ +  +  L
Sbjct: 122 ----LASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176

Query: 913 DLS-YNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
           DL    KL          L  L    +   N+ 
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  109 bits (273), Expect = 4e-25
 Identities = 68/475 (14%), Positives = 148/475 (31%), Gaps = 97/475 (20%)

Query: 340 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399
           P  +         +++ +         +L  LD   + +T     + +  LT + +L  +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICT 72

Query: 400 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
           +N+         L  ++ L      +N++      +  +TP  +L  L+  +N       
Sbjct: 73  SNNITTL----DLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYLNCDTN------- 116

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 519
                   +L + ++S               N  L +L    ++L     + +  + +L 
Sbjct: 117 --------KLTKLDVS--------------QNPLLTYLNCARNTLT---EIDVSHNTQLT 151

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 579
            LD   N     + V        L   + S N +             L  L+   N +T 
Sbjct: 152 ELDCHLNKKITKLDVT---PQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT- 204

Query: 580 EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS 639
           ++  +     + L FL  S+N L     +    L  L +     N    E+   +S  S 
Sbjct: 205 KLDLNQ---NIQLTFLDCSSNKLTEIDVT---PLTQLTYFDCSVNPL-TELD--VSTLSK 255

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
           L  L+    +L  +I   L +   L +           +  +      L +LD     I+
Sbjct: 256 LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

Query: 700 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759
             L                                 LV L L+   L   +   +   ++
Sbjct: 311 -ELD--------------------------LSQNPKLVYLYLNNTELT-ELD--VSHNTK 340

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 814
           L  L+  + +++ +    + ++  L     ++     +      N +L  + + +
Sbjct: 341 LKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  106 bits (266), Expect = 3e-24
 Identities = 76/410 (18%), Positives = 143/410 (34%), Gaps = 47/410 (11%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG--EIPDHLAMCCVNLEFL 595
           D   S V     M A D     S   +  L  LD  N+ +T    I          L  L
Sbjct: 18  DNFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSITDMTGIEK-----LTGLTKL 69

Query: 596 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 655
             ++N++     S      NL +L  + N     +   ++  + L  L  + N L+ K+ 
Sbjct: 70  ICTSNNITTLDLS---QNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT-KLD 122

Query: 656 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH 715
             +     L ++   +N L     ++      L  LD   N     L        +  + 
Sbjct: 123 --VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLD 176

Query: 716 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 775
            S N    ++ E        L  L+   N +   +   ++   QL+ L+ + N L     
Sbjct: 177 CSFN----KITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE--- 226

Query: 776 IQLCRLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 834
           I +  L QL   D S N L  L  S     TTLH    +    D    T       +G  
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286

Query: 835 EKKILEIFEFTTKNIAYAYQGRVLSL-------LAGLDLSCNKLVGHIPPQIGNLTRIQT 887
           + K L++   T   +       +  L       L  L L+  +L   +   + + T++++
Sbjct: 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 888 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 937
           L+  + ++      +   +  + +   +  +    +P++ +  N+L I +
Sbjct: 344 LSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAV 390

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 81/504 (16%), Positives = 140/504 (27%), Gaps = 125/504 (24%)

Query: 111 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
                          +   S  +L++LTSL   ++ +    D    + L+ L +L    N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSN 74

Query: 171 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTLHLESNNFTATLTT 229
            I  +++S        L  L          NKL    +     L  L+ ++N       T
Sbjct: 75  NITTLDLS----QNTNLTYLACD------SNKLTNLDVTPLTKLTYLNCDTNKL-----T 119

Query: 230 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 289
             ++     L YL    +               +L  + +S                  L
Sbjct: 120 KLDVSQNPLLTYLNCARN---------------TLTEIDVSHN--------------TQL 150

Query: 290 EHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
             LD        N    ++       L  L  S      N    LD  +     L  L  
Sbjct: 151 TELDCHL-----NKKITKLDVTPQTQLTTLDCSF-----NKITELD--VSQNKLLNRLNC 198

Query: 350 DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSL 409
           D N++   L   L     L  LD S N+LT       +  LT +     S N      + 
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLT----EIDVTPLTQLTYFDCSVNPL----TE 247

Query: 410 EPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHEL 469
             +   SKL                         L  + L+ N               +L
Sbjct: 248 LDVSTLSKLTTLHCIQT----------------DLLEIDLTHNT--------------QL 277

Query: 470 KEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQ 529
              +    + I E     + +NT+L  L      +     L +  + +L +L ++N    
Sbjct: 278 IYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT 331

Query: 530 GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 589
             + V        L   +     +      S G +  L     +  +             
Sbjct: 332 -ELDVS---HNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI----------- 374

Query: 590 VNLEFLSLSNNSLKGHIFSRIFSL 613
             +   +L+NNSL   +   +   
Sbjct: 375 -TMPKETLTNNSLTIAVSPDLLDQ 397

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.8 bits (249), Expect = 5e-22
 Identities = 79/468 (16%), Positives = 136/468 (29%), Gaps = 51/468 (10%)

Query: 494 LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
                     +     +       L  LD  N++      +E    L  L     + N +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEK---LTGLTKLICTSNNI 76

Query: 554 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 613
             ++         L +L   +NKLT      L      L +L+   N L     S     
Sbjct: 77  T-TLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCDTNKLTKLDVS---QN 126

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
             L +L    N    EI   +S  + L  L  + N    K+   +     L  +    N 
Sbjct: 127 PLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 733
           +     ++  +   L  L+   NNI+  L        +  +  S N    +L E      
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNIT-KLDLNQNI-QLTFLDCSSN----KLTEIDVTPL 232

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           + L   D S N L   +      LS+L+ L+    +L     I L    QL         
Sbjct: 233 TQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE---IDLTHNTQLIYFQAEGCR 286

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
               +     NT L+      +       T   +S     +    L   E T  ++++  
Sbjct: 287 KIKELDVT-HNTQLYLLDCQAAGI-----TELDLSQNP-KLVYLYLNNTELTELDVSH-- 337

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
                + L  L      +       +G +  +     +          T +N     ++ 
Sbjct: 338 ----NTKLKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVS 391

Query: 914 LSYNKLSG---KIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 958
                  G    I      +   A   + + NLS   P  T  F + N
Sbjct: 392 PDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSEN 439

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.4 bits (235), Expect = 3e-20
 Identities = 63/376 (16%), Positives = 110/376 (29%), Gaps = 66/376 (17%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 L  L  + NNI        L+ LS+ + L  L    N   N  ++    L+ LT
Sbjct: 60  IEKLTGLTKLICTSNNI------TTLD-LSQNTNLTYLACDSNKLTNLDVTP---LTKLT 109

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            L+   N     +   +      L  L+   N +  ++VS       +L  LD       
Sbjct: 110 YLNCDTN----KLTKLDVSQNPLLTYLNCARNTLTEIDVS----HNTQLTELDCHLNKKI 161

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSI 257
                   +     L TL    N  T       ++     L  L  D +++  + L    
Sbjct: 162 T----KLDVTPQTQLTTLDCSFNKITEL-----DVSQNKLLNRLNCDTNNITKLDL---- 208

Query: 258 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 317
            +    L  L  S  +    L+         L + D             ++   ++  L 
Sbjct: 209 -NQNIQLTFLDCSSNK----LTEIDVTPLTQLTYFDCS------VNPLTELDVSTLSKLT 257

Query: 318 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 377
            L    + L           L     L     +       L   + + T L +LD     
Sbjct: 258 TLHCIQTDLLEID-------LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAG 308

Query: 378 LTGSISSSPLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESH 436
           +T       L     +  L L+N     + VS     +++KLK     N  I  + +   
Sbjct: 309 IT----ELDLSQNPKLVYLYLNNTELTELDVS-----HNTKLKSLSCVNAHIQ-DFSSVG 358

Query: 437 SLTPKFQLKSLSLSSN 452
            +     L +   +  
Sbjct: 359 KIP---ALNNNFEAEG 371

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.1 bits (224), Expect = 6e-19
 Identities = 71/444 (15%), Positives = 130/444 (29%), Gaps = 60/444 (13%)

Query: 210 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 269
           FP  N     +  F    T T        L  L     +  I+ +  I      L  L  
Sbjct: 15  FPDDNFASEVAAAFEMQATDTISEEQLATLTSLDC--HNSSITDMTGIEK-LTGLTKLIC 71

Query: 270 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 329
           +       ++        +L +L     ++        +    +  L YL+   + L   
Sbjct: 72  TSNN----ITTLDLSQNTNLTYLACDSNKLT------NLDVTPLTKLTYLNCDTNKLTKL 121

Query: 330 SSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVH 389
                   +     L  L    N L   +   +++ T L  LD   N+    I+   +  
Sbjct: 122 D-------VSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKK---ITKLDVTP 168

Query: 390 LTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLS 448
            T +  L  S N    + VS      +  L   +   N I         L    QL  L 
Sbjct: 169 QTQLTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLD 218

Query: 449 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 508
            SSN    +          +L   + S    + E         +KL  L+ +   L    
Sbjct: 219 CSSNKLTEIDVTPLT----QLTYFDCSVNP-LTELDVS---TLSKLTTLHCIQTDLL--- 267

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
            + +  + +L +           + V        L   +     +   +         L 
Sbjct: 268 EIDLTHNTQLIYFQAEGCRKIKELDVT---HNTQLYLLDCQAAGIT-ELD--LSQNPKLV 321

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
           +L L+N +LT E+          L+ LS  N  ++   FS +  +  L          + 
Sbjct: 322 YLYLNNTELT-ELDVSH---NTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEAEGQTIT 375

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSG 652
              ++L+  S    +  +  +  G
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 85.9 bits (213), Expect = 1e-17
 Identities = 54/357 (15%), Positives = 105/357 (29%), Gaps = 60/357 (16%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
            TP  +L  L+   N +           +S+   L  L+   N      +S     + LT
Sbjct: 102 VTPLTKLTYLNCDTNKLTK-------LDVSQNPLLTYLNCARNTLTEIDVSH---NTQLT 151

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            L    N     I   +    + L  LD + N+I  ++VS      + L  L+       
Sbjct: 152 ELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITELDVS----QNKLLNRLNCD----- 199

Query: 199 DGNKLLQ-SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSI 257
             N + +  +     L  L   SN       T  ++   T L Y     + L     +  
Sbjct: 200 -TNNITKLDLNQNIQLTFLDCSSNKL-----TEIDVTPLTQLTYFDCSVNPLT----ELD 249

Query: 258 GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGES-MPSL 316
            S    L  L     +    L      H   L +              ++ +  +    L
Sbjct: 250 VSTLSKLTTLHCIQTD----LLEIDLTHNTQLIYFQA------EGCRKIKELDVTHNTQL 299

Query: 317 KYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
             L    + +           L     L  LY++N +L   L   +++ T L+ L     
Sbjct: 300 YLLDCQAAGITELD-------LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNA 349

Query: 377 QLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEIN 433
            +      S +  + ++     +       +++      +         + ++   N
Sbjct: 350 HIQ---DFSSVGKIPALNNNFEAEGQT---ITMPKETLTNNSLTIAVSPDLLDQFGN 400

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 58/329 (17%), Positives = 103/329 (31%), Gaps = 59/329 (17%)

Query: 606 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
            F+  F   N    +            S  + ++L  L  +N++++      +  L GL 
Sbjct: 10  SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLT 67

Query: 666 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 725
            ++   N++     ++  +  +L  L    N ++ +L        +  ++   N    +L
Sbjct: 68  KLICTSNNITT---LDLSQNTNLTYLACDSNKLT-NLDVTPLT-KLTYLNCDTN----KL 118

Query: 726 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 785
            +        L  L+ + N L   I   +   +QL+ L+   N       + +    QL 
Sbjct: 119 TKLDVSQNPLLTYLNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLT 173

Query: 786 LLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 844
            LD S N +  L  S       L+   NN         T   ++                
Sbjct: 174 TLDCSFNKITELDVSQNKLLNRLNCDTNNI--------TKLDLNQ--------------- 210

Query: 845 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 904
                           L  LD S NKL   I   +  LT++   + S N LT    L  S
Sbjct: 211 -------------NIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT---ELDVS 251

Query: 905 NLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
            L  + +L      L          L   
Sbjct: 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  105 bits (265), Expect = 1e-24
 Identities = 52/281 (18%), Positives = 110/281 (39%), Gaps = 23/281 (8%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNK 576
           ++ LD+SNN    +I         +L    ++ N ++ +I   SF ++  L+ LDLS N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIP-QSL 634
           L+  +         +L FL+L  N  K    + +FS L  L+ L +       +I  +  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

Query: 635 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 694
           +  + L+ L ++ ++L    P+ L +++ + H+++        + +      S++ L++ 
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230

Query: 695 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
           D ++     S                        +     +   + ++   L   +   +
Sbjct: 231 DTDLDTFHFSELSTGET----------------NSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 755 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           + +S L  L  + N L+        RL  LQ + L  N   
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 3e-24
 Identities = 63/298 (21%), Positives = 106/298 (35%), Gaps = 38/298 (12%)

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 688
           IP  L+   ++K L L+NN ++      L     LQ +V+  N +   I  + F  L SL
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSL 102

Query: 689 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           + LD+S N +S    S F PL S+  ++L  N      +   F + + L  L +      
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 748 GSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
             I      GL+ L  L +  ++L+   P  L  +  +  L L       L+    D T+
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222

Query: 807 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSL-----L 861
                                     SVE   L   +  T + +    G   SL      
Sbjct: 223 --------------------------SVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 862 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 919
             + ++   L   +   +  ++ +  L  S N L       F  L  ++ + L  N  
Sbjct: 257 RNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 8e-24
 Identities = 66/296 (22%), Positives = 114/296 (38%), Gaps = 33/296 (11%)

Query: 123 CNNSILSSV--ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
            ++  L+S+      ++ SL LS+N +   I   +     NL+ L +  N I+ +E    
Sbjct: 38  GSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIE-EDS 95

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNF 236
           +  L  L+ LDLS       N L   S   F    SL  L+L  N +  TL  T    + 
Sbjct: 96  FSSLGSLEHLDLSY------NYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL 148

Query: 237 TNLEYLTLDDSSLHISLLQSIGS-IF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 292
           T L+ L +     ++     I    F     L+ L +   ++            +++ HL
Sbjct: 149 TKLQILRV----GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-SLKSIQNVSHL 203

Query: 293 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG----LCPLAHLQELY 348
            +   +       L+I  +   S++ L L  + L T     L  G    L      + + 
Sbjct: 204 ILHMKQH---ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK 260

Query: 349 IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           I +  L   +   L   + L  L+ S NQL  S+       LTS++++ L  N + 
Sbjct: 261 ITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.6 bits (225), Expect = 2e-19
 Identities = 64/273 (23%), Positives = 105/273 (38%), Gaps = 20/273 (7%)

Query: 111 SKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
             +K LDL  N       S + R  +L +L L+ N +  +I+   F SL +LE LD++ N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 171 EIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL--LQSMGSFPSLNTLHLESNNFTATLT 228
            + N+  S  ++ L  L  L+L G      N    L     F  L  L +       T T
Sbjct: 111 YLSNLS-SSWFKPLSSLTFLNLLG------NPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 229 TTQE--LHNFTNLEYLTLDD---SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 283
             Q       T LE L +D     S     L+SI     ++ +L +   +   +L     
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI----QNVSHLILHMKQHI-LLLEIFV 218

Query: 284 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
               S+E L++R   +          GE+   +K  +     +   S   + + L  ++ 
Sbjct: 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
           L EL    N L+          TSL+ + +  N
Sbjct: 279 LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 57/316 (18%), Positives = 105/316 (33%), Gaps = 75/316 (23%)

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425
            +++ LD+S N++T  IS+S L    +++ L L++N      ++E          F    
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN---TIEE-------DSFS--- 97

Query: 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
                      SL     L+ L LS N                       ++  +    +
Sbjct: 98  -----------SLG---SLEHLDLSYN-----------------------YLSNL---SS 117

Query: 486 WLLENNTKLEFLYLVNDSL-----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL 540
              +  + L FL L+ +          F        +L+ L V N +    I  +    L
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGL 173

Query: 541 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 600
             L    I  + L    P S  ++  +  L L   +    + +       ++E L L + 
Sbjct: 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232

Query: 601 SLKGHIFSRIFS--------LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 652
            L    FS + +            R + +       ++ + L++ S L  L  + N L  
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

Query: 653 KIPRW-LGNLKGLQHI 667
            +P      L  LQ I
Sbjct: 292 -VPDGIFDRLTSLQKI 306

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 21/229 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN-LCNNSILSSVA 132
           +    F+    LE LDLS+N ++  + +        LS L  L+L GN        S  +
Sbjct: 91  IEEDSFSSLGSLEHLDLSYNYLSNLSSSW----FKPLSSLTFLNLLGNPYKTLGETSLFS 146

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
            L+ L  L + +      I  K+F  L+ LEEL+I+ +++ + E  +  + ++ +  L L
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PKSLKSIQNVSHLIL 205

Query: 193 SG-------VGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLT-L 244
                        D    ++ +     L    L++ +F+    +T E ++         +
Sbjct: 206 HMKQHILLLEIFVDVTSSVECL----ELRDTDLDTFHFSE--LSTGETNSLIKKFTFRNV 259

Query: 245 DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 293
             +   +  +  + +    L  L  S  ++  V  G  F    SL+ + 
Sbjct: 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 41/255 (16%), Positives = 75/255 (29%), Gaps = 49/255 (19%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL-CRLNQLQLLDLSDN 792
            ++ +LDLS N +       +     L  L L  N +   +       L  L+ LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 793 NLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 848
            L  L  S F      T L+   N                            + E     
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGN------------------------PYKTLGE----- 141

Query: 849 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLR 907
                    L+ L  L +        I  +    LT ++ L +  ++L    P +  +++
Sbjct: 142 ---TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 908 HIESLDLSYNKLSGKIPR---------QLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFN 958
           ++  L L   +    +           + ++L    +    ++ LS        +  TF 
Sbjct: 199 NVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257

Query: 959 KSSYDGNPFLCGLPL 973
                       + L
Sbjct: 258 NVKITDESLFQVMKL 272

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 6e-09
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 29/166 (17%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA 132
            +    F     LE L++  +++           L  +  +  L L      + +L  + 
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPK----SLKSIQNVSHLILHMK--QHILLLEIF 217

Query: 133 --RLSSLTSLHLSHNILQG----SIDAKEFDSLSN---LEELDINDNEIDNVEVSRGYRG 183
               SS+  L L    L       +   E +SL        + I D  +   +V +    
Sbjct: 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--FQVMKLLNQ 275

Query: 184 LRKLKSLDLSGVGIRDGNKLLQSMG-----SFPSLNTLHLESNNFT 224
           +  L  L+         N+ L+S+         SL  + L +N + 
Sbjct: 276 ISGLLELEF------SRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 42/216 (19%), Positives = 66/216 (30%), Gaps = 62/216 (28%)

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
           C        S   LN SIP  +     +  L+L++N +       L R   LQ L L+ N
Sbjct: 30  CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86

Query: 793 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 852
            ++ +    F +                                                
Sbjct: 87  GINTIEEDSFSS------------------------------------------------ 98

Query: 853 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIP--LTFSNLRHI 909
                L  L  LDLS N L  ++       L+ +  LNL  N    T+     FS+L  +
Sbjct: 99  -----LGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151

Query: 910 ESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLS 944
           + L +       KI R+    L  L    +  ++L 
Sbjct: 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (250), Expect = 3e-23
 Identities = 58/233 (24%), Positives = 84/233 (36%), Gaps = 32/233 (13%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
            Q + L  N+++  +P      C NL  L L +N L   I +  F+ L  L  L L  N 
Sbjct: 34  SQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNA 91

Query: 626 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FC 683
            +  +  +       L  L+L+   L    P     L  LQ++ +  N L+  +P + F 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFR 150

Query: 684 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
            L +L  L +  N IS                         + E  F    SL  L L  
Sbjct: 151 DLGNLTHLFLHGNRIS------------------------SVPERAFRGLHSLDRLLLHQ 186

Query: 744 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           N +   +       L +L  L L  NNL       L  L  LQ L L+DN   
Sbjct: 187 NRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 54/261 (20%), Positives = 86/261 (32%), Gaps = 36/261 (13%)

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 573
            ++            Q  +P     I  +     +  N +     +SF     L  L L 
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVP---VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH 64

Query: 574 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQ 632
           +N L   I          LE L LS+N+    +    F  L  L  L L+      E+  
Sbjct: 65  SNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGP 122

Query: 633 -SLSKCSSLKGLYLNNNNLSGKIP-RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 690
                 ++L+ LYL +N L   +P     +L  L H+ +  N +       F  L SL  
Sbjct: 123 GLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 691 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 750
           L +  N ++                         +    F +   L+TL L  N L+ ++
Sbjct: 182 LLLHQNRVA------------------------HVHPHAFRDLGRLMTLYLFANNLS-AL 216

Query: 751 PDWI-DGLSQLSHLNLAHNNL 770
           P      L  L +L L  N  
Sbjct: 217 PTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 3e-21
 Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 5/194 (2%)

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
              + + L GN        S   C +L  L+L++N L+         L  L+ + +  N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 674 LEGPIPVE-FCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTF 730
               +    F  L  L  L +    +   L    F  L +++ ++L  N L   L + TF
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTF 149

Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 790
            +  +L  L L  N ++        GL  L  L L  N +    P     L +L  L L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 791 DNNLHGLIPSCFDN 804
            NNL  L       
Sbjct: 210 ANNLSALPTEALAP 223

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 3e-20
 Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 689 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           + LD+SDN    S+    F+ L  +  +HL +  L  +L  G F   ++L  L L  N L
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141

Query: 747 NGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN- 804
             ++PD     L  L+HL L  N +          L+ L  L L  N +  + P  F + 
Sbjct: 142 Q-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 805 ---TTLHESYNN 813
               TL+   NN
Sbjct: 201 GRLMTLYLFANN 212

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 22/204 (10%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-A 132
           + A+ F   + L  L L  N +A           + L+ L++LDL  N    S+  +   
Sbjct: 47  VPAASFRACRNLTILWLHSNVLARIDAAA----FTGLALLEQLDLSDNAQLRSVDPATFH 102

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDL 192
            L  L +LHL    LQ  +    F  L+ L+ L + DN +  +     +R L  L  L L
Sbjct: 103 GLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFL 160

Query: 193 SGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
                  GN++  +    +F    SL+ L L  N             +   L  L L  +
Sbjct: 161 H------GNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHA--FRDLGRLMTLYLFAN 211

Query: 248 SLHISLLQSIGSIFPSLKNLSMSG 271
           +L  +L     +   +L+ L ++ 
Sbjct: 212 NLS-ALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 57/292 (19%), Positives = 89/292 (30%), Gaps = 65/292 (22%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           C  +           +  ++P    P + +++ L  N +   +   +F  C +L  L L 
Sbjct: 8   CYNEPKVTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLH 64

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSC 801
            N L         GL+ L  L+L+ N     V       L +L  L L    L  L P  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL 124

Query: 802 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861
           F                                                       L+ L
Sbjct: 125 FRG-----------------------------------------------------LAAL 131

Query: 862 AGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
             L L  N L   +P     +L  +  L L  N ++      F  L  ++ L L  N+++
Sbjct: 132 QYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 921 GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNPFLC 969
              P    DL  L    +  NNLS  +P      A      Y   + NP++C
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLS-ALPT--EALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 77/290 (26%)

Query: 123 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C    L +V     ++   + L  N +   + A  F +  NL  L ++ N +  ++ +  
Sbjct: 18  CPQQGLQAVPVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARID-AAA 75

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN 235
           + GL  L+ LDLS       N  L+S+   +F     L+TLHL+                
Sbjct: 76  FTGLALLEQLDLSD------NAQLRSVDPATFHGLGRLHTLHLDRCGLQE---------- 119

Query: 236 FTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
                                                     L    F    +L++L ++
Sbjct: 120 ------------------------------------------LGPGLFRGLAALQYLYLQ 137

Query: 296 FARI-ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
              + AL     +     + +L +L L G+ +    S + ++    L  L  L +  N +
Sbjct: 138 DNALQALPDDTFR----DLGNLTHLFLHGNRI----SSVPERAFRGLHSLDRLLLHQNRV 189

Query: 355 RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
               P    +   L  L +  N L+ ++ +  L  L +++ LRL++N + 
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 29/220 (13%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTS 139
            + + L  N I+                L  L L  N+     L+ +       L+ L  
Sbjct: 34  SQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNV-----LARIDAAAFTGLALLEQ 84

Query: 140 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 199
           L LS N    S+D   F  L  L  L ++   +  +     +RGL  L+ L L       
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQ------ 137

Query: 200 GNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQ 255
            N L      +F    +L  L L  N  ++            +L+ L L  + +   +  
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNRVA-HVHP 194

Query: 256 SIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
                   L  L +    ++  L  +     ++L++L + 
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 26/160 (16%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV- 131
            ++ + F    +L +L L    +              L+ L+ L L+ N      L ++ 
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNA-----LQALP 145

Query: 132 ----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
                 L +LT L L  N +  S+  + F  L +L+ L ++ N + +V     +R L +L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRL 203

Query: 188 KSLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNF 223
            +L L        N L     +++    +L  L L  N +
Sbjct: 204 MTLYLF------ANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 52/284 (18%), Positives = 89/284 (31%), Gaps = 81/284 (28%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
           A  Q +++  N +            +L IL +  N L   I ++    L  +E+L LS+N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
             ++  S++P         F              H L    +L +L L            
Sbjct: 91  A-QL-RSVDP-------ATF--------------HGLG---RLHTLHLDRC--------- 115

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 521
                       L  +         L      L++LYL                      
Sbjct: 116 -----------GLQEL------GPGLFRGLAALQYLYL---------------------- 136

Query: 522 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 581
              +N  Q  +P +    L +L +  +  N +      +F  +  L  L L  N++   +
Sbjct: 137 --QDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HV 192

Query: 582 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGN 624
             H       L  L L  N+L   + +     LR L++L L  N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 46/250 (18%), Positives = 78/250 (31%), Gaps = 52/250 (20%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 373
            + + + L G+ +    S +         +L  L++ +N L             L  LD+
Sbjct: 32  AASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 374 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEINGE 431
           S N    S+  +    L  +  L L     +    L P LF   + L+    ++N +   
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQ-A 143

Query: 432 INES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 489
           + +     L     L  L L  N                     +S +      P     
Sbjct: 144 LPDDTFRDLG---NLTHLFLHGN--------------------RISSV------PERAFR 174

Query: 490 NNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV 544
               L+ L L  + +       FR L      RL  L +  NN    +P E    L +L 
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLG-----RLMTLYLFANNLS-ALPTEALAPLRALQ 228

Query: 545 YFNISMNALD 554
           Y  ++ N   
Sbjct: 229 YLRLNDNPWV 238

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  102 bits (256), Expect = 7e-23
 Identities = 75/403 (18%), Positives = 142/403 (35%), Gaps = 56/403 (13%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRL-----SKLKKLDLRGNL----CNNS 126
           +S       L  L+L  N +     + G+  + +       K++KL L+           
Sbjct: 49  SSALRVNPALAELNLRSNEL----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104

Query: 127 ILSSVARLSSLTSLHLSHNILQGS----IDAKEFDSLSNLEELDINDNEIDNV---EVSR 179
           + S++  L +L  LHLS N+L  +    +     D    LE+L +    +       ++ 
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 180 GYRGLRKLKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELH 234
             R     K L +S   I + G ++L          L  L LES   T+         + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 235 NFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHFK 287
           +  +L  L L  + L       L   +      L+ L +  C +   G     +     +
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 288 SLEHLDMRFARIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
           SL+ L +    +       +++ E++      L+ L +   +            L     
Sbjct: 285 SLKELSLAGNEL--GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 344 LQELYIDNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIE 394
           L EL I NN L  +    L        + LR+L ++   ++     S++++ L+   S+ 
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLR 401

Query: 395 ELRLSNNHF------RIPVSLEPLFNHSKLKIFDAKNNEINGE 431
           EL LSNN        ++  S+        L+     +   + E
Sbjct: 402 ELDLSNNCLGDAGILQLVESVR--QPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score =  100 bits (251), Expect = 3e-22
 Identities = 73/414 (17%), Positives = 138/414 (33%), Gaps = 52/414 (12%)

Query: 83  QQLESLDLSWNNIAGCAENEGLERLSR-LSKLKKLDLRGN-LCNNS---ILSSVARLSSL 137
             ++SLD+    +     +     L   L + + + L    L       I S++    +L
Sbjct: 3   LDIQSLDIQCEEL----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 138 TSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKS 189
             L+L  N L                   +++L + +  +       +S   R L  L+ 
Sbjct: 59  AELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 190 LDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTT--QELHNFTNLEYLTL 244
           L LS   + D G +LL      P   L  L LE  + +A         L    + + LT+
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 245 DDSSLHISLLQSIGSIFP----SLKNLSMSGCEVN--GVLS-GQGFPHFKSLEHLDMRFA 297
            ++ ++ + ++ +          L+ L +  C V                SL  L +   
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237

Query: 298 RIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND 353
           ++      +  +   +      L+ L +    +       L + L     L+EL +  N+
Sbjct: 238 KL--GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 354 LR--GSLPWCLA---NTTSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFR 404
           L   G+   C         L  L V     T       SS  L     + EL++SNN   
Sbjct: 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLE 354

Query: 405 ----IPVSLEPLFNHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLSSN 452
                 +        S L++    + +++       + +L     L+ L LS+N
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 93.5 bits (233), Expect = 5e-20
 Identities = 92/483 (19%), Positives = 167/483 (34%), Gaps = 86/483 (17%)

Query: 160 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG--NKLLQSMGSFPSLNTLH 217
            +++ LDI   E+ +   +     L++ + + L   G+ +     +  ++   P+L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 218 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN-- 275
           L SN                      L D  +H  +LQ + +    ++ LS+  C +   
Sbjct: 63  LRSNE---------------------LGDVGVHC-VLQGLQTPSCKIQKLSLQNCCLTGA 100

Query: 276 GVLS-GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM----PSLKYLSLSGSTLGTNS 330
           G            +L+ L +    +    + LQ++ E +      L+ L L   +L   S
Sbjct: 101 GCGVLSSTLRTLPTLQELHLSDNLL--GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 331 SRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-----NTTSLRILDVSFNQLTG---SI 382
              L   L      +EL + NND+  +    L      +   L  L +    +T      
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 383 SSSPLVHLTSIEELRLSNNHFR----IPVSLEPLFNHSKLKIFDAKNNEINGE--INESH 436
               +    S+ EL L +N         +    L   S+L+        I  +   +   
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 437 SLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 495
            L  K  LK LSL+ N  GD                      +++ E    LLE   +LE
Sbjct: 279 VLRAKESLKELSLAGNELGDEG-------------------ARLLCET---LLEPGCQLE 316

Query: 496 FLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL----PSLVYFN 547
            L++ + S        F   +  ++ L  L +SNN  +     E+   L      L    
Sbjct: 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376

Query: 548 ISMNALD----GSIPSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSN 599
           ++   +      S+ ++      L+ LDLSNN L       + + +      LE L L +
Sbjct: 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 600 NSL 602
              
Sbjct: 437 IYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 89.3 bits (222), Expect = 1e-18
 Identities = 78/464 (16%), Positives = 158/464 (34%), Gaps = 77/464 (16%)

Query: 287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 346
             ++ LD++   +  + +    +   +   + + L    L     + +   L     L E
Sbjct: 3   LDIQSLDIQCEEL--SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 347 LYIDNNDLRGSLPWCLA-----NTTSLRILDVSFNQLT----GSISSSPLVHLTSIEELR 397
           L + +N+L      C+       +  ++ L +    LT    G +SS+ L  L +++EL 
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELH 119

Query: 398 LSNNHFRIPVSLEPLF-----NHSKLKIFDAKNNEINGEINE--SHSLTPKFQLKSLSLS 450
           LS+N       L+ L         +L+    +   ++    E  +  L  K   K L++S
Sbjct: 120 LSDNLLG-DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 451 SNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----A 505
           +N   ++                    ++++ +    L ++  +LE L L +  +     
Sbjct: 179 NNDINEAG-------------------VRVLCQG---LKDSPCQLEALKLESCGVTSDNC 216

Query: 506 GPFRLPIHSHKRLRFLDVSNNNFQG----HIPVEIGDILPSLVYFNISMNALD----GSI 557
                 + S   LR L + +N         +   +      L    I    +     G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 558 PSSFGNVIFLQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKG----HIFSR 609
                    L+ L L+ N+L  E    + + L      LE L + + S       H  S 
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 610 IFSLRNLRWLLLEGNHFVGEIPQSLSK-----CSSLKGLYLNNNNLSGK----IPRWLGN 660
           +   R L  L +  N       + L +      S L+ L+L + ++S      +   L  
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 661 LKGLQHIVMPKNHLEGPIPVEFCRL-----DSLQILDISDNNIS 699
              L+ + +  N L     ++           L+ L + D   S
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 84.6 bits (210), Expect = 4e-17
 Identities = 90/528 (17%), Positives = 158/528 (29%), Gaps = 140/528 (26%)

Query: 315 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLR----GSLPWCLANTTSLRI 370
            ++ L +    L       L   L      Q + +D+  L       +   L    +L  
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQ---QCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 371 LDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           L++  N+L       +          I++L L N           L              
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT-GAGCGVL-------------- 105

Query: 427 EINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
                   S +L     L+ L LS N  GD+                    ++++ E   
Sbjct: 106 --------SSTLRTLPTLQELHLSDNLLGDAG-------------------LQLLCEG-- 136

Query: 486 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 541
            LL+   +LE L L   SL      P    + +    + L VSNN+        +   L 
Sbjct: 137 -LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 542 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA---MCCVNLEFLSLS 598
                                +   L+ L L +  +T +    L        +L  L+L 
Sbjct: 196 D--------------------SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 235

Query: 599 NNSLKGHIFSRI-----FSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNN 649
           +N L     + +          LR L +          G++ + L    SLK L L  N 
Sbjct: 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295

Query: 650 LSGKIPRWLGNLKGLQHI--VMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 707
           L           +G + +   + +                L+ L +   + +    +C  
Sbjct: 296 LGD---------EGARLLCETLLEPGC------------QLESLWVKSCSFT---AACCS 331

Query: 708 PLS--------IKQVHLSKNMLHG----QLKEGTFFNCSSLVTLDLSYNYLN----GSIP 751
             S        + ++ +S N L      +L +G     S L  L L+   ++     S+ 
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391

Query: 752 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNL 794
             +     L  L+L++N L     +QL          L+ L L D   
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 79.2 bits (196), Expect = 2e-15
 Identities = 76/460 (16%), Positives = 137/460 (29%), Gaps = 110/460 (23%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD----GSIPSSFGNVIFLQFLDLS 573
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 574 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNH 625
           +N+L       +   L      ++ LSL N  L     G + S + +L  L+ L L  N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 626 FVGEIPQSLSK-----CSSLKGLYLNNNNLSGKIPRWLGN-LKGLQHIVMPKNHLEGPIP 679
                 Q L +        L+ L L   +LS      L + L+                 
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD------------- 171

Query: 680 VEFCRLDSLQILDISDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKE 727
                    + L +S+N+I+ +        L     P  ++ + L    +       L  
Sbjct: 172 --------FKELTVSNNDINEAGVRVLCQGLKDS--PCQLEALKLESCGVTSDNCRDLCG 221

Query: 728 GTFFNCSSLVTLDLSYNYLNGS-----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL- 781
               + +SL  L L  N L         P  +   S+L  L +    +  +    LCR+ 
Sbjct: 222 I-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280

Query: 782 ---NQLQLLDLSDNNLH---------GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 829
                L+ L L+ N L           L+       +L     +                
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS---------------- 324

Query: 830 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG-----NLTR 884
                             + +          L  L +S N+L      ++        + 
Sbjct: 325 -----------FTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 885 IQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLS 920
           ++ L L+  +++     ++  T      +  LDLS N L 
Sbjct: 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 3e-11
 Identities = 59/374 (15%), Positives = 123/374 (32%), Gaps = 67/374 (17%)

Query: 591 NLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYL 645
           +++ L +    L    ++ +   L+  + + L+          +I  +L    +L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 646 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS----GS 701
            +N L            G+  ++     L+ P          +Q L + +  ++    G 
Sbjct: 64  RSNELGDV---------GVHCVL---QGLQTPSC-------KIQKLSLQNCCLTGAGCGV 104

Query: 702 LPSCFYPL-SIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLN----GSIPD 752
           L S    L +++++HLS N+L       L EG       L  L L Y  L+      +  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 753 WIDGLSQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSDNNLHG--------LIP 799
            +        L +++N++       LC+       QL+ L L    +          ++ 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 800 SCFDNTTLHESYNNNSSPDKPFKT-SFSISGPQGSVEKKILEIFEFTT---KNIAYAYQG 855
           S      L    N     D         +  P   +    +     T     ++    + 
Sbjct: 225 SKASLRELALGSNKLG--DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR- 281

Query: 856 RVLSLLAGLDLSCNKL----VGHIPPQIGN-LTRIQTLNLSHNNLT--GTIPLT--FSNL 906
                L  L L+ N+L       +   +     ++++L +   + T       +   +  
Sbjct: 282 -AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340

Query: 907 RHIESLDLSYNKLS 920
           R +  L +S N+L 
Sbjct: 341 RFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 1e-09
 Identities = 50/223 (22%), Positives = 80/223 (35%), Gaps = 34/223 (15%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRL----SKLKKLDLRGNLCNNSIL 128
            L   L  P  +L +L +    I      +G   L R+      LK+L L GN   +   
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGI----TAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 129 SSVARL-----SSLTSLHLSHNILQGSIDAKEFDSL----SNLEELDINDNEIDNVEVSR 179
             +          L SL +       +     F S+      L EL I++N +++  V  
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSF-TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 180 GYRGLR----KLKSLDLSGVGIRD--GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 233
             +GL      L+ L L+   + D   + L  ++ +  SL  L L +N          +L
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD--AGILQL 418

Query: 234 -----HNFTNLEYLTLDDSSLH---ISLLQSIGSIFPSLKNLS 268
                     LE L L D          LQ++    PSL+ +S
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 66/321 (20%), Positives = 109/321 (33%), Gaps = 71/321 (22%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA 132
            L   L     QLE+L L    +     ++    L  +           + +        
Sbjct: 189 VLCQGLKDSPCQLEALKLESCGV----TSDNCRDLCGI-----------VASK------- 226

Query: 133 RLSSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDN---VEVSRGYRGL 184
             +SL  L L  N L G +   E         S L  L I +  I      ++ R  R  
Sbjct: 227 --ASLRELALGSNKL-GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 185 RKLKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTT--TQELHNFTNL 239
             LK L L+G  + D G +LL      P   L +L ++S +FTA   +  +  L     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 240 EYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 295
             L + ++ L       L Q +G     L+ L ++ C+    +S        +       
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD----VSDSSCSSLAA------- 392

Query: 296 FARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNNDL 354
                L  +          SL+ L LS + LG      L + +  P   L++L + +   
Sbjct: 393 ----TLLAN---------HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

Query: 355 R----GSLPWCLANTTSLRIL 371
                  L     +  SLR++
Sbjct: 440 SEEMEDRLQALEKDKPSLRVI 460

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.0 bits (244), Expect = 2e-22
 Identities = 66/301 (21%), Positives = 105/301 (34%), Gaps = 43/301 (14%)

Query: 487 LLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFLDVSNNNFQGHIPVEIGDILPSLVY 545
           L      LE+L    D+ A   +         L+ L V        I      +L     
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVL----- 92

Query: 546 FNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKG 604
                             +  LQ L L N ++TG  P   L     +L  L+L N S   
Sbjct: 93  -----------------GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 605 HIFS----RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--- 657
                   + +    L+ L +   H +    + +    +L  L L++N   G+       
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 658 -LGNLKGLQHIVMPKNHLE---GPIPVEFCRLDSLQILDISDNNISGSLP--SCFYPLSI 711
                  LQ + +    +E   G           LQ LD+S N++  +    SC +P  +
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 712 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 771
             ++LS   L  Q+ +G     + L  LDLSYN L+   P   D L Q+ +L+L  N   
Sbjct: 256 NSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFL 309

Query: 772 G 772
            
Sbjct: 310 D 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 87.3 bits (216), Expect = 1e-18
 Identities = 52/299 (17%), Positives = 84/299 (28%), Gaps = 35/299 (11%)

Query: 362 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEPLFNHSKLK 419
                SL  L    +        + ++   S++ L +       RI      +   S L+
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 420 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKM 479
               +N E+ G             L  L+L +      T   +L                
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWL---------------- 140

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVE---I 536
             E   WL      L      + + +      +     L  LD+S+N   G   +     
Sbjct: 141 -AELQQWLKPGLKVLSIAQAHSLNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALC 196

Query: 537 GDILPSLVYFNISMN---ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 593
               P+L    +         G   +     + LQ LDLS+N L              L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 594 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 652
            L+LS   LK  +   + +   L  L L  N      P    +   +  L L  N    
Sbjct: 257 SLNLSFTGLK-QVPKGLPA--KLSVLDLSYNRL-DRNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 6e-16
 Identities = 57/309 (18%), Positives = 96/309 (31%), Gaps = 62/309 (20%)

Query: 612 SLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRW---LGNLKGLQHI 667
             R+L +LL   +          + K  SLK L +    +  +I      +  + GLQ +
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 668 VMPKNHLEGPIPVEFCRLD--SLQILDISDNNISGSLP-----SCFYPLSIKQVHLSKNM 720
            +    + G  P          L IL++ + + +           +    +K + +++  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 721 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI----DGLSQLSHLNLAHNNLE---GE 773
                         +L TLDLS N   G               L  L L +  +E   G 
Sbjct: 161 S-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 774 VPIQLCRLNQLQLLDLSDNNLHGLIP--SCFDNTTLHE---SYNNNSSPDKPFKTSFSIS 828
                    QLQ LDLS N+L       SC   + L+    S+                 
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT---------------- 263

Query: 829 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 888
                    + ++ +                 L+ LDLS N+L     P    L ++  L
Sbjct: 264 --------GLKQVPKGLPAK------------LSVLDLSYNRLDR--NPSPDELPQVGNL 301

Query: 889 NLSHNNLTG 897
           +L  N    
Sbjct: 302 SLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 35/319 (10%)

Query: 92  WNNIAGCAENEGLERLSRLSKLKKLDLRGNL-CNNSILSSVARLSSLTSLHLSHNIL--Q 148
           W++   C     +E       L+ L  R +   +    + + +  SL  L +    +  +
Sbjct: 24  WSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSR 83

Query: 149 GSIDAKEFDSLSNLEELDINDNEI-DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 207
               A     +S L+EL + + E+               L  L+L  V     +  L  +
Sbjct: 84  ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143

Query: 208 GSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNL 267
             +       L      +   + +++  F  L  L L D+   +     I ++ P     
Sbjct: 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE-LGERGLISALCPL---- 198

Query: 268 SMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLG 327
                             F +L+ L +R A +   +     +  +   L+ L LS ++L 
Sbjct: 199 -----------------KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL- 240

Query: 328 TNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 387
                         + L  L +    L+  +P  L     L +LD+S+N+L     +   
Sbjct: 241 --RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD---RNPSP 292

Query: 388 VHLTSIEELRLSNNHFRIP 406
             L  +  L L  N F   
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 41/156 (26%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCN---NSILSS 130
            +      F  L +LDLS N   G           +   L+ L LR            + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 131 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190
            A    L  L LSHN L+ +  A   D  S L  L+++   +   +V +G     KL  L
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVL 279

Query: 191 DLSGVGIRDGNKL--LQSMGSFPSLNTLHLESNNFT 224
           DLS       N+L    S    P +  L L+ N F 
Sbjct: 280 DLS------YNRLDRNPSPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 51/262 (19%), Positives = 87/262 (33%), Gaps = 22/262 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENE----GLERLSRLSKLKKLDLRGNLCNNSILS 129
             A L      ++SL L    +           G  R+  +S L++L L       +   
Sbjct: 54  TEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113

Query: 130 SVARL--SSLTSLHLSHNILQG---SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGL 184
            +       L  L+L +         +   +      L+ L I      N    +  R  
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV-RVF 172

Query: 185 RKLKSLDLSGVGIRDGNKLLQSM--GSFPSLNTLHLESNNFTA-TLTTTQELHNFTNLEY 241
             L +LDLS         L+ ++    FP+L  L L +      +   +        L+ 
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG 232

Query: 242 LTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL 301
           L L  +SL  +           L +L++S   +  V  G        L  LD+ + R+  
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL----PAKLSVLDLSYNRLDR 288

Query: 302 NTSFLQIIGESMPSLKYLSLSG 323
           N S  +     +P +  LSL G
Sbjct: 289 NPSPDE-----LPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 9e-13
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 10/201 (4%)

Query: 263 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 322
           +++   +    + G L   G    + L   ++        T+   ++  + P L  L+L 
Sbjct: 74  TVRAARIPSRILFGALRVLGISGLQELTLENLEV----TGTAPPPLLEATGPDLNILNLR 129

Query: 323 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
             +  T  + + +        L+ L I            +    +L  LD+S N   G  
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 383 S---SSPLVHLTSIEELRLSNNHFRIPVSLEP--LFNHSKLKIFDAKNNEINGEINESHS 437
               +   +   +++ L L N     P  +         +L+  D  +N +         
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 438 LTPKFQLKSLSLSSNYGDSVT 458
             P  QL SL+LS      V 
Sbjct: 250 DWPS-QLNSLNLSFTGLKQVP 269

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 34/247 (13%)

Query: 709 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW---IDGLSQLSHLNL 765
            S++ +    +      +        SL  L +    +   I      + G+S L  L L
Sbjct: 43  RSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTL 102

Query: 766 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 825
            +  + G  P  L       L  L+  N+           T            KP     
Sbjct: 103 ENLEVTGTAPPPLLEATGPDLNILNLRNVS--------WATRDAWLAELQQWLKPGLKVL 154

Query: 826 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP----PQIGN 881
           SI+             F           Q RV   L+ LDLS N  +G            
Sbjct: 155 SIAQAH-------SLNFSCE--------QVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 882 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESLDLSYNKLSGKIPRQL-VDLNTLAIFI 937
              +Q L L +  +    G      +    ++ LDLS+N L            + L    
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 938 VAYNNLS 944
           +++  L 
Sbjct: 260 LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 20/92 (21%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLERLSRL------------------SKLKKLDL 118
           +L     QL+ LDLS N++   A     +  S+L                  +KL  LDL
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281

Query: 119 RGNLCNNSILSSVARLSSLTSLHLSHNILQGS 150
             N        S   L  + +L L  N    S
Sbjct: 282 SYN--RLDRNPSPDELPQVGNLSLKGNPFLDS 311

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 2e-22
 Identities = 53/332 (15%), Positives = 99/332 (29%), Gaps = 73/332 (21%)

Query: 487 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 546
             +   K        +       L      +   L ++  N    +P  +    P +   
Sbjct: 32  AWDKWEKQALPGENRNEA--VSLLKECLINQFSELQLNRLNLS-SLPDNLP---PQITVL 85

Query: 547 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 606
            I+ NAL  S+P    +   L++LD  +N+L+  +P+  A    +L+ L + NN L   +
Sbjct: 86  EITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPA----SLKHLDVDNNQLT--M 134

Query: 607 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
                    L ++  + N     +P+  +   SL+ L + NN L+  +P    +L     
Sbjct: 135 LPE--LPALLEYINADNNQLT-MLPELPT---SLEVLSVRNNQLT-FLPELPESL----- 182

Query: 667 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLK 726
                                 + LD+S N +  SLP+                     +
Sbjct: 183 ----------------------EALDVSTNLLE-SLPAVPVRNH-------------HSE 206

Query: 727 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL 786
           E       + +      N +   IP+ I  L     + L  N L   +   L +      
Sbjct: 207 E-------TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 787 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 818
                                         P+
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAVTAWFPE 290

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 94.3 bits (234), Expect = 6e-20
 Identities = 58/367 (15%), Positives = 98/367 (26%), Gaps = 103/367 (28%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI--FSL 613
           SI     N   L   +   N ++              E  +L   + +    S +    +
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTIS-GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLI 58

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
                L L   +    +P +L     +  L +  N L   +P    +L+ L       N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI-SLPELPASLEYLD---ACDNR 111

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 733
           L   +P       SL+ LD+ +N ++  LP                              
Sbjct: 112 LST-LPELPA---SLKHLDVDNNQLT-MLPELP--------------------------- 139

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
           + L  ++   N L   +P+     + L  L++ +N L   +P        L+ LD+S N 
Sbjct: 140 ALLEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELP---ESLEALDVSTNL 191

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
           L  L      N                                                 
Sbjct: 192 LESLPAVPVRNHHS---------------------------------------------- 205

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
                          N++  HIP  I +L    T+ L  N L+  I  + S         
Sbjct: 206 ----EETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

Query: 914 LSYNKLS 920
                 S
Sbjct: 261 GPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 3e-18
 Identities = 57/295 (19%), Positives = 96/295 (32%), Gaps = 61/295 (20%)

Query: 645 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 703
              N +SG    +       +   +P  N  E    ++ C ++    L ++  N+S SLP
Sbjct: 17  SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLP 75

Query: 704 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHL 763
               P  I  + +++N L   L E      +SL  LD   N L+ ++P+     + L HL
Sbjct: 76  DNLPP-QITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELP---ASLKHL 125

Query: 764 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN-NSSPDKPFK 822
           ++ +N L   +P        L+ ++  +N L  L         L    N     P+    
Sbjct: 126 DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE---- 177

Query: 823 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 882
                                             +   L  LD+S N L   +P      
Sbjct: 178 ----------------------------------LPESLEALDVSTNLLE-SLPAVPVRN 202

Query: 883 TRIQT----LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
              +          N +T  IP    +L    ++ L  N LS +I   L      
Sbjct: 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 5e-16
 Identities = 49/282 (17%), Positives = 94/282 (33%), Gaps = 64/282 (22%)

Query: 678 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 737
               + + +   +   + N     L  C       ++ L++  L   L +        + 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLIN-QFSELQLNRLNLS-SLPDNLP---PQIT 83

Query: 738 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
            L+++ N L  S+P+     + L +L+   N L   +P        L+ LD+ +N L  L
Sbjct: 84  VLEITQNAL-ISLPELP---ASLEYLDACDNRLS-TLPELPA---SLKHLDVDNNQLTML 135

Query: 798 IPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 855
            P        ++   N  +  P+                                     
Sbjct: 136 -PELPALLEYINADNNQLTMLPEL------------------------------------ 158

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES---- 911
              + L  L +  N+L   +P    +L     L++S N L  ++P       H E     
Sbjct: 159 --PTSLEVLSVRNNQL-TFLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIF 211

Query: 912 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 953
                N+++  IP  ++ L+     I+  N LS +I E  +Q
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 72.7 bits (178), Expect = 3e-13
 Identities = 55/314 (17%), Positives = 107/314 (34%), Gaps = 45/314 (14%)

Query: 87  SLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSI-LSSVARLSSLTSLHLSHN 145
           S +  +N I         +  S   K +K  L G   N ++ L     ++  + L L+  
Sbjct: 14  SQNSFYNTI----SGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL 69

Query: 146 ILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ 205
            L  S+     +    +  L+I  N + ++           L+ LD         N+L  
Sbjct: 70  NLS-SLPD---NLPPQITVLEITQNALISLPEL-----PASLEYLDACD------NRLST 114

Query: 206 SMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 265
                 SL  L +++N     LT   EL     LEY+  D++ L   L +   S    L+
Sbjct: 115 LPELPASLKHLDVDNNQ----LTMLPEL--PALLEYINADNNQLT-MLPELPTS----LE 163

Query: 266 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGST 325
            LS+   ++  +         +SLE LD+           L+ +        +   +   
Sbjct: 164 VLSVRNNQLTFL-----PELPESLEALDVSTNL-------LESLPAVPVRNHHSEETEIF 211

Query: 326 LGTNSSRI--LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 383
                +RI  + + +  L     + +++N L   +   L+  T+           + S  
Sbjct: 212 FRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 384 SSPLVHLTSIEELR 397
               +H    + + 
Sbjct: 272 QQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.1 bits (166), Expect = 9e-12
 Identities = 44/217 (20%), Positives = 75/217 (34%), Gaps = 54/217 (24%)

Query: 737 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLH 795
           ++ +  YN ++G+  D+     +     L   N    V  ++ C +NQ   L L+  NL 
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS 72

Query: 796 GLIPSCFDN-TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
            L  +     T L  + N   S P+ P                                 
Sbjct: 73  SLPDNLPPQITVLEITQNALISLPELPAS------------------------------- 101

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
                  L  LD   N+L   +P    +L     L++ +N LT  +P   + L +   ++
Sbjct: 102 -------LEYLDACDNRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLEY---IN 146

Query: 914 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 950
              N+L+  +P     L  L    V  N L+  +PE 
Sbjct: 147 ADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPEL 178

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 35/193 (18%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERL-SRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTS 139
             Q+  L+++ N          L  L    + L+ LD   N      LS++    +SL  
Sbjct: 79  PPQITVLEITQNA---------LISLPELPASLEYLDACDNR-----LSTLPELPASLKH 124

Query: 140 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 199
           L + +N L   +     +  + LE ++ ++N++  +           L+ L +       
Sbjct: 125 LDVDNNQLT-MLP----ELPALLEYINADNNQLTMLPEL-----PTSLEVLSVR------ 168

Query: 200 GNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLE-YLTLDDSSLHISLLQSIG 258
            N+L        SL  L + +N   +        H+    E +    ++ +   + ++I 
Sbjct: 169 NNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL 227

Query: 259 SIFPSLKNLSMSG 271
           S+      + +  
Sbjct: 228 SL-DPTCTIILED 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.9 bits (238), Expect = 2e-20
 Identities = 48/353 (13%), Positives = 112/353 (31%), Gaps = 37/353 (10%)

Query: 104 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 163
           +      ++  K +L+    + +   +   L+S+  +  +++ ++     +    L N+ 
Sbjct: 14  IFPDDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 68

Query: 164 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 223
           +L +N N++ +++       L+ L  L L    I+D    L S+     L +L LE N  
Sbjct: 69  KLFLNGNKLTDIK---PLTNLKNLGWLFLDENKIKD----LSSLKDLKKLKSLSLEHNG- 120

Query: 224 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 283
              ++    L +   LE L L ++   I+ +  +      L  LS+     N +      
Sbjct: 121 ---ISDINGLVHLPQLESLYLGNNK--ITDITVLSR-LTKLDTLSLED---NQISDIVPL 171

Query: 284 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
                L++L +    I+ +   L      + +L  L L                   L  
Sbjct: 172 AGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELF----SQECLNKPINHQSNLVV 222

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
              +   +  L    P  +++       +V ++        +  V     + + +     
Sbjct: 223 PNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL----PEFTNEVSFIFYQPVTIGKAKA 276

Query: 404 RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDS 456
           R    +           +D     I  ++     +T                +
Sbjct: 277 RFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYT 329

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 95.6 bits (237), Expect = 2e-20
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 30/239 (12%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
           F +    +L   ++            + L+ + ++    +  +   +  +  L ++T L 
Sbjct: 20  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNS--DIKSVQGIQYLPNVTKLF 71

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N L    D K   +L NL  L +++N+I ++      + L+KLKSL L   GI D  
Sbjct: 72  LNGNKLT---DIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISD-- 123

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL-HISLLQSIGSI 260
             +  +   P L +L+L +N     +T    L   T L+ L+L+D+ +  I  L      
Sbjct: 124 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDNQISDIVPLAG---- 173

Query: 261 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 319
              L+NL +S    N +   +     K+L+ L++            Q       ++K  
Sbjct: 174 LTKLQNLYLSK---NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 5e-18
 Identities = 54/321 (16%), Positives = 106/321 (33%), Gaps = 28/321 (8%)

Query: 535 EIGDI-----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCC 589
            I  I         +  N+   ++  ++      +  +  +  +N+ +   +   +    
Sbjct: 10  PIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL- 64

Query: 590 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 649
            N+  L L+ N L       + +L+NL WL L+ N  + ++  SL     LK L L +N 
Sbjct: 65  PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHNG 120

Query: 650 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL 709
           +S  I   L +L  L+ + +  N +         RL  L  L + DN IS  +       
Sbjct: 121 IS-DIN-GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIVPLAGLT 175

Query: 710 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 769
            ++ ++LSKN +   L+        +L  L+L          +    L   + +     +
Sbjct: 176 KLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 770 LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 829
           L     I      +        N    L     + + +             F    +   
Sbjct: 233 LVTPEIISDDGDYE------KPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

Query: 830 PQGSVEKKILEIFEFTTKNIA 850
            +       ++     TK  A
Sbjct: 287 KEVYTVSYDVDGTVIKTKVEA 307

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.4 bits (208), Expect = 8e-17
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 26/192 (13%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 +  L L+ N +        ++ L+ L  L  L L  N      LSS+  L  L 
Sbjct: 61  IQYLPNVTKLFLNGNKL------TDIKPLTNLKNLGWLFLDEN--KIKDLSSLKDLKKLK 112

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
           SL L HN +    D      L  LE L + +N+I ++        L KL +L L    I 
Sbjct: 113 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS 166

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD---SSLHISLLQ 255
           D    +  +     L  L+L  N+    ++  + L    NL+ L L      +  I+   
Sbjct: 167 D----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 256 SIGSIFPSLKNL 267
           ++  +  ++KN 
Sbjct: 219 NL-VVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 80.9 bits (199), Expect = 8e-16
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 282 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 341
               F      +++   +  +          + S+  +  + S +      +  QG+  L
Sbjct: 16  PDDAFAETIKDNLKKKSVT-DAVTQ----NELNSIDQIIANNSDI----KSV--QGIQYL 64

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
            ++ +L+++ N L    P  L N  +L  L +  N++   +S   L  L  ++ L L +N
Sbjct: 65  PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS--SLKDLKKLKSLSLEHN 119

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
                  +  L +  +L+     NN+I  +I     LT   +L +LSL  N    +    
Sbjct: 120 GIS---DINGLVHLPQLESLYLGNNKIT-DITVLSRLT---KLDTLSLEDNQISDIVP-- 170

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFL 521
            L    +L+   LS    I +     L     L+ L L +            +      +
Sbjct: 171 -LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 522 DVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
             ++ +      +            N+  +  + +   SF     +        
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKP---NVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.6 bits (180), Expect = 2e-13
 Identities = 50/334 (14%), Positives = 97/334 (29%), Gaps = 65/334 (19%)

Query: 640 LKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
           +      +  +    P             + K  +   +      L+S+  +  ++++I 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 700 GSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 758
            S+    Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L 
Sbjct: 57  -SVQGIQYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLK 109

Query: 759 QLSHLNLAHNN---LEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESY 811
           +L  L+L HN    + G     L  L QL+ L L +N +  +  +         TL    
Sbjct: 110 KLKSLSLEHNGISDING-----LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
           N                        +I +I                L+ L  L LS N +
Sbjct: 163 N------------------------QISDIVPLAG-----------LTKLQNLYLSKNHI 187

Query: 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 931
              +   +  L  +  L L             SNL    ++  +   L    P  + D  
Sbjct: 188 S-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDG 243

Query: 932 TLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 965
                 V ++            +           
Sbjct: 244 DYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 51/298 (17%), Positives = 111/298 (37%), Gaps = 39/298 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
                 +    +N+            + L  +  L   G       +  V  L++L  L 
Sbjct: 18  LANAIKIAAGKSNV------TDTVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLE 69

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L  N +    D     +L+ + EL+++ N + NV       GL+ +K+LDL+   I D  
Sbjct: 70  LKDNQIT---DLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITD-- 121

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
             +  +    +L  L+L+ N     +T    L   TNL+YL++ ++   +S L  + +  
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNA--QVSDLTPLAN-L 172

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSL 321
             L  L       N +          +L  + ++  +I+  +        +  +L  ++L
Sbjct: 173 SKLTTLKADD---NKISDISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTL 224

Query: 322 SGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLT 379
           +  T+ TN     +  L     +    +         P  +++  +    ++++N  +
Sbjct: 225 TNQTI-TNQPVFYNNNL-----VVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 1e-18
 Identities = 56/296 (18%), Positives = 119/296 (40%), Gaps = 38/296 (12%)

Query: 157 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 216
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 217 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 276
            L+ N     +T    L N T +  L L  +   +  + +I     S+K L ++  ++  
Sbjct: 69  ELKDNQ----ITDLAPLKNLTKITELELSGN--PLKNVSAIAG-LQSIKTLDLTSTQITD 121

Query: 277 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 336
           V          +L+ L +   +I  N S L      + +L+YLS+            L  
Sbjct: 122 V---TPLAGLSNLQVLYLDLNQIT-NISPL----AGLTNLQYLSIGN-----AQVSDLT- 167

Query: 337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 396
            L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++     SPL + +++  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS---DVSPLANTSNLFIV 222

Query: 397 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
            L+N      ++ +P+F ++ L + +      +G      +++      S +L+ N
Sbjct: 223 TLTNQ----TITNQPVFYNNNLVVPNVVKG-PSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 28/229 (12%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 + +L      +        +E +  L+ L  L+L+ N   +  L+ +  L+ +T
Sbjct: 37  QADLDGITTLSAFGTGV------TTIEGVQYLNNLIGLELKDNQITD--LAPLKNLTKIT 88

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
            L LS N L+   +      L +++ LD+   +I +V       GL  L+ L L    I 
Sbjct: 89  ELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQIT 142

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIG 258
           +    +  +    +L  L + +      ++    L N + L  L  DD+   IS +  + 
Sbjct: 143 N----ISPLAGLTNLQYLSIGNAQ----VSDLTPLANLSKLTTLKADDN--KISDISPLA 192

Query: 259 SIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
           S  P+L  + +     N +       +  +L  + +    I     F  
Sbjct: 193 S-LPNLIEVHLKN---NQISDVSPLANTSNLFIVTLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 50/290 (17%), Positives = 99/290 (34%), Gaps = 44/290 (15%)

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L + +      + +      +  ++  +  L      +T  I         NL  L L +
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           N +     + + +L  +  L L GN    +   +++   S+K L L +  ++   P  L 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
            L  LQ + +  N +    P     L +LQ L I +  +S  L                 
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP--------------- 168

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 779
                       N S L TL    N ++  I   +  L  L  ++L +N +    P+   
Sbjct: 169 ----------LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSPLA-- 214

Query: 780 RLNQLQLLDLSDNNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSIS 828
             + L ++ L++  +        +N    +     + +P  P   S + +
Sbjct: 215 NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 65/334 (19%)

Query: 233 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 292
                N   +    S+  ++   +       +  LS  G  V  +   +G  +  +L  L
Sbjct: 15  DPALANAIKIAAGKSN--VTDTVTQAD-LDGITTLSAFGTGVTTI---EGVQYLNNLIGL 68

Query: 293 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
           +++  +I  + + L    +++  +  L LSG     N  + +   +  L  ++ L + + 
Sbjct: 69  ELKDNQIT-DLAPL----KNLTKITELELSG-----NPLKNVS-AIAGLQSIKTLDLTST 117

Query: 353 DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL 412
            +    P  LA  ++L++L +  NQ+T   + SPL  LT+++ L + N        L PL
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS---DLTPL 169

Query: 413 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 472
            N SKL    A +N+I+ +I+   SL     L  + L +N                    
Sbjct: 170 ANLSKLTTLKADDNKIS-DISPLASLP---NLIEVHLKNN-------------------- 205

Query: 473 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHI 532
               I  +       L N + L  + L N ++      P+  +  L   +V         
Sbjct: 206 ---QISDVSP-----LANTSNLFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSG--A 252

Query: 533 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 566
           P+    I  +  Y +     L  ++ S   NV +
Sbjct: 253 PIAPATISDNGTYAS---PNLTWNLTSFINNVSY 283

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 48/265 (18%), Positives = 101/265 (38%), Gaps = 30/265 (11%)

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPS 542
             +   +  L      +       +     L  L++ +N         I D+     L  
Sbjct: 37  QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ--------ITDLAPLKNLTK 86

Query: 543 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 602
           +    +S N L     S+   +  ++ LDL++ ++T   P        NL+ L L  N +
Sbjct: 87  ITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI 141

Query: 603 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662
                S +  L NL++L +     V ++   L+  S L  L  ++N +S   P  L +L 
Sbjct: 142 TN--ISPLAGLTNLQYLSIGNAQ-VSDLT-PLANLSKLTTLKADDNKISDISP--LASLP 195

Query: 663 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 722
            L  + +  N +    P+      +L I+ +++  I  +    FY  ++   ++ K    
Sbjct: 196 NLIEVHLKNNQISDVSPLA--NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSG 251

Query: 723 GQLKEGTFFNCSSLVTLDLSYNYLN 747
             +   T  +  +  + +L++N  +
Sbjct: 252 APIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 44/295 (14%), Positives = 92/295 (31%), Gaps = 60/295 (20%)

Query: 361 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 420
                 +   +    + +T    +     L  I  L           ++E +   + L  
Sbjct: 14  PDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIG 67

Query: 421 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 480
            + K+N+I  ++    +LT   ++  L LS N                        +K +
Sbjct: 68  LELKDNQIT-DLAPLKNLT---KITELELSGN-----------------------PLKNV 100

Query: 481 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI- 539
                  +     ++ L L +  +      P+     L+ L +  N         I +I 
Sbjct: 101 SA-----IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQ--------ITNIS 145

Query: 540 ----LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
               L +L Y +I    +  S  +   N+  L  L   +NK++ +I    ++   NL  +
Sbjct: 146 PLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKIS-DISPLASL--PNLIEV 200

Query: 596 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 650
            L NN +     S + +  NL  + L       +     +       +   +   
Sbjct: 201 HLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 49/284 (17%), Positives = 93/284 (32%), Gaps = 51/284 (17%)

Query: 385 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 444
            P   L +  ++    ++           +   +    A    +   I     L     L
Sbjct: 13  FPDPALANAIKIAAGKSNVT---DTVTQADLDGITTLSAFGTGVT-TIEGVQYLN---NL 65

Query: 445 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 504
             L L  N                        I  +       L+N TK+  L L  + L
Sbjct: 66  IGLELKDN-----------------------QITDLAP-----LKNLTKITELELSGNPL 97

Query: 505 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 564
                  I   + ++ LD+++       P+     L +L    + +N +  +  S    +
Sbjct: 98  KNVS--AIAGLQSIKTLDLTSTQITDVTPLA---GLSNLQVLYLDLNQI--TNISPLAGL 150

Query: 565 IFLQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG 623
             LQ+L + N +++   P  +L      L  L   +N +     S + SL NL  + L+ 
Sbjct: 151 TNLQYLSIGNAQVSDLTPLANL----SKLTTLKADDNKISD--ISPLASLPNLIEVHLKN 204

Query: 624 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 667
           N      P  L+  S+L  + L N  ++ +   +  NL     +
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 53/279 (18%)

Query: 658 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
              L     I   K+++   +      LD +  L      ++ ++    Y  ++  + L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELK 71

Query: 718 KNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 776
            N    Q+ +     N + +  L+LS N L  ++   I GL  +  L+L    +    P 
Sbjct: 72  DN----QITDLAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP- 124

Query: 777 QLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSV 834
            L  L+ LQ+L L  N +  + P +   N   L                           
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA---------------------- 161

Query: 835 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN 894
             ++ ++                LS L  L    NK+   I P + +L  +  ++L +N 
Sbjct: 162 --QVSDLTPLAN-----------LSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQ 206

Query: 895 LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
           ++   PL  +N  ++  + L+   ++ +      +L   
Sbjct: 207 ISDVSPL--ANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 56/278 (20%), Positives = 95/278 (34%), Gaps = 57/278 (20%)

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
               ++   +    +N++  +     +L G+  +      +     V++  L++L  L++
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLEL 70

Query: 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYNYLNGSIPD 752
            DN I+  L        I ++ LS N     LK         S+ TLDL+   +    P 
Sbjct: 71  KDNQIT-DLAPLKNLTKITELELSGN----PLKNVSAIAGLQSIKTLDLTSTQITDVTP- 124

Query: 753 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLH 808
            + GLS L  L L  N +    P  L  L  LQ L + +  +  L P    N    TTL 
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 809 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 868
              N  S           IS                             L  L  + L  
Sbjct: 180 ADDNKISD----------ISPLAS-------------------------LPNLIEVHLKN 204

Query: 869 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 906
           N++    P  + N + +  + L++  +T       +NL
Sbjct: 205 NQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNL 240

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 46/215 (21%), Positives = 83/215 (38%), Gaps = 25/215 (11%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 792 NNLHGLIP-SCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 849
           N +  L P       T L  S N   +          +S   G    K L++      ++
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKN----------VSAIAGLQSIKTLDLTSTQITDV 122

Query: 850 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
                   LS L  L L  N++  +I P +  LT +Q L++ +  ++   PL  +NL  +
Sbjct: 123 TPLAG---LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTPL--ANLSKL 175

Query: 910 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 944
            +L    NK+S  I   L  L  L    +  N +S
Sbjct: 176 TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS 208

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 54/313 (17%), Positives = 105/313 (33%), Gaps = 47/313 (15%)

Query: 136 SLTSLHLSHNILQGSIDAKEF----DSLSNLEELDINDNEIDNV---EVSRGYRGLRKLK 188
           S+    L  + +  + D K          +++E+ ++ N I       +S      + L+
Sbjct: 5   SIEGKSLKLDAI-TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 189 SLDLSGVGIRDGNK--------LLQSMGSFPSLNTLHLESNNFTAT--LTTTQELHNFTN 238
             + S +               LLQ++   P L+T+ L  N F  T        L   T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 239 LEYLTLDD------------SSLHISLLQSIGSIFPSLKNLSMSGC--EVNGVLS-GQGF 283
           LE+L L +             +L    +       P L+++       E   +    + F
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 284 PHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCP 340
              + L  + M    I        ++ E       LK L L  +T     S  L   L  
Sbjct: 184 QSHRLLHTVKMVQNGIR-PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 341 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 390
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 302

Query: 391 TSIEELRLSNNHF 403
             +  L L+ N F
Sbjct: 303 PDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 48/318 (15%), Positives = 109/318 (34%), Gaps = 50/318 (15%)

Query: 83  QQLESLDLSWNNI--AGCAENEGL-ERLSRLSKLKKLDLRGNLCNN----------SILS 129
             ++ + LS N I          L E ++    L+  +                   +L 
Sbjct: 32  DSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ 88

Query: 130 SVARLSSLTSLHLSHNILQGSIDAKEFDSL----SNLEELDINDNEI------------D 173
           ++ +   L ++ LS N   G    +         + LE L +++N +             
Sbjct: 89  ALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDG--NKLLQSMGSFPSLNTLHLESNNFT---ATLT 228
            + V++  +    L+S+      + +G   +  ++  S   L+T+ +  N          
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 229 TTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCE-----VNGVLSG 280
             + L     L+ L L D++       ++       P+L+ L ++ C         V+  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 281 QGFPHFKSLEHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRI--LDQ 336
                   L+ L +++  I L+   +   +I E MP L +L L+G+        +  + +
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 337 GLCPLAHLQELYIDNNDL 354
                   +   +D+ + 
Sbjct: 328 VFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 49/269 (18%), Positives = 85/269 (31%), Gaps = 57/269 (21%)

Query: 567 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLK----------GHIFSRIFS 612
           ++ + LS N +  E    + +++A    +LE    S+                +   +  
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 613 LRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
              L  + L  N F       +   LSK + L+ LYL+NN L  +    +   + LQ + 
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELA 150

Query: 669 MPKNHLEGPIPVEFCRLDSLQILDISDNNI--------SGSLPSCFYPLSIKQVHLSKNM 720
           + K     P          L+ +    N +        + +  S      +  V + +N 
Sbjct: 151 VNKKAKNAP---------PLRSIICGRNRLENGSMKEWAKTFQSH---RLLHTVKMVQNG 198

Query: 721 LHGQ-----LKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLE 771
           +  +     L EG    C  L  LDL  N        ++   +     L  L L    L 
Sbjct: 199 IRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 772 GE------VPIQLCRLNQLQLLDLSDNNL 794
                             LQ L L  N +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 61.3 bits (149), Expect = 6e-10
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 93/359 (25%)

Query: 488 LENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL 543
           L  +  ++ + L  +++    A      I S K L   + S+  F G +  EI + L  L
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLL 86

Query: 544 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNN 600
           +               +      L  + LS+N       + L         LE L L NN
Sbjct: 87  L--------------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 601 SL-------------KGHIFSRIFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGL 643
            L             +  +  +  +   LR ++   N      + E  ++      L  +
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192

Query: 644 YLNNNNLSGK-IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI---- 698
            +  N +  + I   L   +GL +                     L++LD+ DN      
Sbjct: 193 KMVQNGIRPEGIEHLLL--EGLAY------------------CQELKVLDLQDNTFTHLG 232

Query: 699 ----SGSLPSCFYPLSIKQVHLSKNMLHGQ--------LKEGTFFNCSSLVTLDLSYNYL 746
               + +L S     +++++ L+  +L  +          +        L TL L YN +
Sbjct: 233 SSALAIALKSW---PNLRELGLNDCLLSARGAAAVVDAFSKLEN---IGLQTLRLQYNEI 286

Query: 747 NG----SIPDWI-DGLSQLSHLNLAHNNL--EGEVPIQLCRL----NQLQLLDLSDNNL 794
                 ++   I + +  L  L L  N    E +V  ++  +     + +L +L D   
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEE 345

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 5e-09
 Identities = 61/392 (15%), Positives = 114/392 (29%), Gaps = 119/392 (30%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSLSNNSLK-------GHIFSRIFSLRNL 616
           ++   L  + +T E    +        +++ + LS N++            +    L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 617 RWLLLEGNHFVGEIP-------QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 669
            +  +       EIP       Q+L KC  L  + L++N                + ++ 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG---------PTAQEPLI- 115

Query: 670 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 729
             + L             L+ L + +N +    P     ++          L        
Sbjct: 116 --DFLSKHT--------PLEHLYLHNNGLG---PQAGAKIA--------RALQELAVNKK 154

Query: 730 FFNCSSLVTLDLSYNYL-NGSIPDWIDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL--- 781
             N   L ++    N L NGS+ +W         L  + +  N +  E +   L      
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 782 -NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 840
             +L++LDL DN                                       GS       
Sbjct: 215 CQELKVLDLQDNTF----------------------------------THLGS------- 233

Query: 841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-------VGHIPPQIGNLTRIQTLNLSHN 893
                   +A A   +    L  L L+   L       V     ++ N+  +QTL L +N
Sbjct: 234 ------SALAIAL--KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYN 284

Query: 894 NLT--GTIPLTFS---NLRHIESLDLSYNKLS 920
            +       L       +  +  L+L+ N+ S
Sbjct: 285 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 63/380 (16%), Positives = 117/380 (30%), Gaps = 106/380 (27%)

Query: 362 LANTTSLRILDVSFNQLTG---SISSSPLVHLTSIEELRLSNNHFRIPVSL---EPLFNH 415
           +A   S+    +  + +T        + L+   S++E+ LS N      +    E + + 
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 416 SKLKIFDAKNNEINGEINE--------SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQH 467
             L+I +  +       +E          +L    +L ++ LS N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA--------- 110

Query: 468 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL-------------AGPFRLPIHS 514
                     + + +F    L  +T LE LYL N+ L                      +
Sbjct: 111 ---------QEPLIDF----LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKN 157

Query: 515 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 574
              LR +    N  +                 N SM         +F +   L  + +  
Sbjct: 158 APPLRSIICGRNRLE-----------------NGSMKEWA----KTFQSHRLLHTVKMVQ 196

Query: 575 NKLTGE-----IPDHLAMCCVNLEFLSLSNNSL--KG--HIFSRIFSLRNLRWLLLEGNH 625
           N +  E     + + LA C   L+ L L +N+    G   +   + S  NLR L L    
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

Query: 626 F----VGEIPQSLSKCS--SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 679
                   +  + SK     L+ L L  N +             ++ +      ++  +P
Sbjct: 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLK---TVIDEKMP 303

Query: 680 VEFCRLDSLQILDISDNNIS 699
                   L  L+++ N  S
Sbjct: 304 -------DLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 3e-08
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 52/276 (18%)

Query: 207 MGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLHISLLQSIGSIF--- 261
           M  F S+    L+ +  T     +    L    +++ + L  +++     + +       
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM---PSLKY 318
             L+    S      V                            L+++ +++   P L  
Sbjct: 60  KDLEIAEFSDIFTGRVKD---------------------EIPEALRLLLQALLKCPKLHT 98

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL-------------RGSLPWCLANT 365
           + LS +  G  +   L   L     L+ LY+ NN L               ++     N 
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 366 TSLRILDVSFNQLT--GSIS-SSPLVHLTSIEELRLSNNHFR----IPVSLEPLFNHSKL 418
             LR +    N+L        +        +  +++  N  R      + LE L    +L
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 419 KIFDAKNNEI--NGEINESHSLTPKFQLKSLSLSSN 452
           K+ D ++N     G    + +L     L+ L L+  
Sbjct: 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 20/166 (12%)

Query: 76  ASLFTPFQQLESLDLSWNNI--AGCAENEGLERLSRLSKLKKLDLRGNLCNN----SILS 129
           A  F   + L ++ +  N I   G       E L+   +LK LDL+ N   +    ++  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLL-EGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 130 SVARLSSLTSLHLSHNILQGS-----IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGL 184
           ++    +L  L L+  +L        +DA        L+ L +  NEI+   V      +
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 185 R----KLKSLDLSGVGIRDG----NKLLQSMGSFPSLNTLHLESNN 222
                 L  L+L+G    +     +++ +   +        L+   
Sbjct: 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDDME 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 47/229 (20%)

Query: 610 IFSLRNLRWLLLEGNHF----VGEIPQSLSKCSSLKGLYLNNNNLSGK----IPRWLGNL 661
            FS+       L+ +         +   L +  S+K + L+ N +  +    +   + + 
Sbjct: 3   RFSIEGKS---LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 662 KGLQHIVMPKNHL-----EGPIPVE-----FCRLDSLQILDISDNNISGSLPSCFYPL-- 709
           K L+              E P  +        +   L  + +SDN    +          
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 119

Query: 710 ---SIKQVHLSKN------------MLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIPDW 753
               ++ ++L  N             L          N   L ++    N L NGS+ +W
Sbjct: 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179

Query: 754 IDGLSQ---LSHLNLAHNNLEGE-VPIQLCRL----NQLQLLDLSDNNL 794
                    L  + +  N +  E +   L        +L++LDL DN  
Sbjct: 180 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 82.6 bits (204), Expect = 6e-17
 Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 12/234 (5%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
              L     KL   I         +LE + +S N +   I + +FS L  L  + +E  +
Sbjct: 32  AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 626 FVGEIP-QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGPIPVEFC 683
            +  I  ++     +L+ L ++N  +         +      + +  N ++       F 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150

Query: 684 RL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
            L     IL ++ N I     S F    + +++LS N    +L    F   S  V LD+S
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 743 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
              ++ S+P +  + L +L   +    NL+ ++P  L +L  L    L+    H
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 5e-13
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 23/249 (9%)

Query: 679 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 738
               C   S ++    ++ ++  +PS   P +  ++      L   +++G F     L  
Sbjct: 3   HHRICHC-SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEK 58

Query: 739 LDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHG 796
           +++S N +   I   +   L +L  + +   N    +  +  + L  LQ L +S+  +  
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 797 LIPSCFDN----TTLHESYNNN--SSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 850
           L      +      L    N N  +     F       G         L        +  
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSF------VGLSFESVILWLNKNGIQEIH-N 171

Query: 851 YAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 909
            A+ G    L        N L   +P  +    +    L++S   +         NL+ +
Sbjct: 172 SAFNG--TQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228

Query: 910 ESLDLSYNK 918
            +      K
Sbjct: 229 RARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 1e-09
 Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 43/252 (17%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-----LSSLTS 139
              L      +    +       S    L+K+++      N +L  +       L  L  
Sbjct: 32  AIELRFVLTKLRVIQKGA----FSGFGDLEKIEIS----QNDVLEVIEADVFSNLPKLHE 83

Query: 140 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 199
           + +        I+ + F +L NL+ L I++  I ++          +   LD+       
Sbjct: 84  IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQ------ 136

Query: 200 GNKLLQSM--GSF----PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISL 253
            N  + ++   SF         L L  N              F   +   L+      + 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGI-----QEIHNSAFNGTQLDELNL--SDNNN 189

Query: 254 LQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG-- 310
           L+ +   +F       +       + S   +   ++L+ L       A +T  L+ +   
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKL------RARSTYNLKKLPTL 242

Query: 311 ESMPSLKYLSLS 322
           E + +L   SL+
Sbjct: 243 EKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 45/249 (18%), Positives = 78/249 (31%), Gaps = 33/249 (13%)

Query: 113 LKKLDLRGNLCNNSILSSVA--RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI-ND 169
             +L          ++   A      L  + +S N +   I+A  F +L  L E+ I   
Sbjct: 32  AIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTAT 226
           N +  +     ++ L  L+ L +S  GI+     L              L ++ N    T
Sbjct: 90  NNLLYIN-PEAFQNLPNLQYLLISNTGIKH----LPD-VHKIHSLQKVLLDIQDNINIHT 143

Query: 227 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG--VLSGQGFP 284
           +     +        L L+ +   I  + +  S F   +   ++  + N    L    F 
Sbjct: 144 IERNSFVGLSFESVILWLNKN--GIQEIHN--SAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 285 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG-STLGTNSSRILDQGLCPLAH 343
                  LD+   RI    S      E++  L+  S      L T         L  L  
Sbjct: 200 GASGPVILDISRTRI---HSLPSYGLENLKKLRARSTYNLKKLPT---------LEKLVA 247

Query: 344 LQELYIDNN 352
           L E  +   
Sbjct: 248 LMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 4e-08
 Identities = 37/288 (12%), Positives = 70/288 (24%), Gaps = 66/288 (22%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
            +  EL      LR       +    L  +++S N +   I +    +L  + E+R+   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
                         + L                  +      L+ L +S+          
Sbjct: 90  --------------NNLLYI------------NPEAFQNLPNLQYLLISNTG-------- 115

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV-NDSL----AGPFRLPIHSHK 516
                             I   P+    ++ +   L +  N ++       F        
Sbjct: 116 ------------------IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---GLSF 154

Query: 517 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576
               L ++ N  Q  I     +            N L+      F        LD+S  +
Sbjct: 155 ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213

Query: 577 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGN 624
           +   +P +       L   S  N          +  L  L    L   
Sbjct: 214 IH-SLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.4 bits (131), Expect = 8e-08
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 16/174 (9%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV- 131
           Y+N   F     L+ L +S   I    +           +   LD++ N+  ++I  +  
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIKHLPDV----HKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 132 ARLSS-LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190
             LS     L L+ N +Q  I    F+     E    ++N ++ +  +  + G      L
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVIL 207

Query: 191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 244
           D+S   I      L S     +L  L   S      L     L     L   +L
Sbjct: 208 DISRTRIHS----LPS-YGLENLKKLRARSTY---NLKKLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 49/228 (21%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNN--SILS 129
           +    F+ F  LE +++S N++      E +E    S L KL ++ +     NN   I  
Sbjct: 45  IQKGAFSGFGDLEKIEISQNDVL-----EVIEADVFSNLPKLHEIRIEKA--NNLLYINP 97

Query: 130 SV-ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLR-K 186
                L +L  L +S+  ++  +             LDI DN  I  +E    + GL  +
Sbjct: 98  EAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIE-RNSFVGLSFE 155

Query: 187 LKSLDLSGVGIRD-----------------GNKLLQSM--GSF---PSLNTLHLESNNFT 224
              L L+  GI++                  N  L+ +    F        L +      
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 225 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMS 270
           +        +   NL+ L           L+ + ++    +L   S++
Sbjct: 216 SL-----PSYGLENLKKLRA----RSTYNLKKLPTLEKLVALMEASLT 254

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
                +K+   IP  +        L      L       FS    +E +++S N +   I
Sbjct: 14  FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 924 PRQ----LVDLNTLAIFIVAYNNLS 944
                  L  L+ +   I   NNL 
Sbjct: 71  EADVFSNLPKLHEI--RIEKANNLL 93

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 81.6 bits (202), Expect = 6e-17
 Identities = 60/293 (20%), Positives = 92/293 (31%), Gaps = 83/293 (28%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           +IP +L    S K L L+ N L   +                           F     L
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLR-HLG-----------------------SYSFFSFPEL 54

Query: 689 QILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           Q+LD+S   I  ++    +  L  +  + L+ N +   L  G F   SSL  L      L
Sbjct: 55  QVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL 112

Query: 747 NGSIPDWI-DGLSQLSHLNLAHNNL-EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
             S+ ++    L  L  LN+AHN +   ++P     L  L+ LDLS N +  +  +    
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
                                                              ++  L   L
Sbjct: 172 LH-------------------------------------------------QMPLLNLSL 182

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           DLS N +   I P      R++ L L  N L       F  L  ++ + L  N
Sbjct: 183 DLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 17/197 (8%)

Query: 558 PSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIFS- 612
             SF +   LQ LDLS  ++   I       L     +L  L L+ N ++  +    FS 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSL----SHLSTLILTGNPIQ-SLALGAFSG 98

Query: 613 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLGNLKGLQHIVMPK 671
           L +L+ L+    +        +    +LK L + +N + S K+P +  NL  L+H+ +  
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 672 NHLEGPIPVEFCRLDSLQI----LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 727
           N ++     +   L  + +    LD+S N ++   P  F  + +K++ L  N L   + +
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPD 217

Query: 728 GTFFNCSSLVTLDLSYN 744
           G F   +SL  + L  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 55/267 (20%), Positives = 88/267 (32%), Gaps = 69/267 (25%)

Query: 557 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRN 615
           +P S       + LDLS N L   +  +       L+ L LS   ++  I    +  L +
Sbjct: 26  LPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 616 LRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 674
           L  L+L GN  +  +     S  SSL+ L     NL+  +                    
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLA-SLE------------------- 116

Query: 675 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCS 734
                     L +L+ L+++ N I  S                            F N +
Sbjct: 117 ----NFPIGHLKTLKELNVAHNLIQ-SFKL----------------------PEYFSNLT 149

Query: 735 SLVTLDLSYNYLNGSIPDWI-DGLSQL----SHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
           +L  LDLS N +  SI       L Q+      L+L+ N +   +     +  +L+ L L
Sbjct: 150 NLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELAL 207

Query: 790 SDNNLHGLIPSCFDN----TTLHESYN 812
             N L  +    FD       +    N
Sbjct: 208 DTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 55/210 (26%), Positives = 80/210 (38%), Gaps = 40/210 (19%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA- 132
           L +  F  F +L+ LDLS   I      +G      LS L  L L GN      + S+A 
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQ--TIEDGA--YQSLSHLSTLILTGNP-----IQSLAL 93

Query: 133 ----RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
                LSSL  L      L  S++      L  L+EL++  N I + ++   +  L  L+
Sbjct: 94  GAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 189 SLDLSGVGIRDGNKLLQSM--GSFPSL-------NTLHLESNNFTATLTTTQELHNFTNL 239
            LDLS       NK +QS+       L        +L L  N          +   F  +
Sbjct: 153 HLDLS------SNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-----QPGAFKEI 200

Query: 240 EYLTLDDSSLHISLLQSI-GSIFPSLKNLS 268
               L    L  + L+S+   IF  L +L 
Sbjct: 201 RLKELA---LDTNQLKSVPDGIFDRLTSLQ 227

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 54/251 (21%), Positives = 96/251 (38%), Gaps = 41/251 (16%)

Query: 123 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C       +   L  S  +L LS N L+  + +  F S   L+ LD++  EI  +E    
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDG-A 71

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN 235
           Y+ L  L +L L+      GN  +QS+  G+F    SL  L     N  +       + +
Sbjct: 72  YQSLSHLSTLILT------GNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGH 122

Query: 236 FTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 292
              L+ L +      I   +     F    +L++L +S  ++  +         + L  +
Sbjct: 123 LKTLKELNVAH--NLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCT----DLRVLHQM 175

Query: 293 DMRFARIALNTSFLQIIGE---SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI 349
            +    + L+ + +  I         LK L+L  + L +    I D     L  LQ++++
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD----RLTSLQKIWL 231

Query: 350 DNNDLRGSLPW 360
             N      PW
Sbjct: 232 HTN------PW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 9e-14
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA- 132
           +    +     L +L L+ N I   A        S LS L+KL       N + L +   
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVET--NLASLENFPI 120

Query: 133 -RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 191
             L +L  L+++HN++Q     + F +L+NLE LD++ N+I ++      R L ++  L+
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLN 179

Query: 192 LSGVGIRDGNKLLQ-SMGSFPSLN--TLHLESNNFTATLTTTQELHNFTNLEYLTLDD 246
           LS       N +     G+F  +    L L++N   +           T+L+ + L  
Sbjct: 180 LSLD--LSLNPMNFIQPGAFKEIRLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 54/243 (22%), Positives = 77/243 (31%), Gaps = 62/243 (25%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P S K + LS N L   L   +FF+   L  LDLS   +  +I D     LS LS L L 
Sbjct: 27  PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 826
            N ++         L+ LQ L   + NL  L      +                      
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH---------------------- 122

Query: 827 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRI 885
                                          L  L  L+++ N +     P+   NLT +
Sbjct: 123 -------------------------------LKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 886 QTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 941
           + L+LS N +          L  +     SLDLS N ++  I         L    +  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTN 210

Query: 942 NLS 944
            L 
Sbjct: 211 QLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 8e-08
 Identities = 54/252 (21%), Positives = 88/252 (34%), Gaps = 73/252 (28%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 370
           S P L+ L LS   + T            L+HL  L +  N ++ SL     +  +SL+ 
Sbjct: 50  SFPELQVLDLSRCEIQTIEDGAYQS----LSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 430
           L      L  S+ + P+ HL +++EL +++N  +   S +        + F         
Sbjct: 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ---SFK------LPEYFS-------- 146

Query: 431 EINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLEN 490
                 +LT    L+ L LSSN                        I+ I       L  
Sbjct: 147 ------NLT---NLEHLDLSSN-----------------------KIQSI---YCTDLRV 171

Query: 491 NTKLEF----LYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 542
             ++      L L  + +     G F+       RL+ L +  N  +  +P  I D L S
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-----RLKELALDTNQLK-SVPDGIFDRLTS 225

Query: 543 LVYFNISMNALD 554
           L    +  N  D
Sbjct: 226 LQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 25/179 (13%)

Query: 283 FPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGL 338
           F  F  L+ LD       L+   +Q I +    S+  L  L L+G+ + + +        
Sbjct: 48  FFSFPELQVLD-------LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG-- 98

Query: 339 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 398
             L+ LQ+L     +L     + + +  +L+ L+V+ N +          +LT++E L L
Sbjct: 99  --LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 399 SNNHFRIPVSLEP-LFNHSKLKIFDAKNNEINGEINESHSLTP----KFQLKSLSLSSN 452
           S+N  +   S+         L      N  ++  +N  + + P    + +LK L+L +N
Sbjct: 157 SSNKIQ---SIYCTDL--RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN 210

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 88/535 (16%), Positives = 169/535 (31%), Gaps = 87/535 (16%)

Query: 154 KEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGV-GIRDGNKLLQSMG---- 208
           K +  +       +       V  +   R   K++S++L G     D N +    G    
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 209 --------SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGS 259
                   S+  L  + L+    T          +F N + L L          L +I +
Sbjct: 95  PWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 260 IFPSLKNLSMSGCEVNGVLSGQGFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPS 315
              +LK L +   +V+ V SG    HF     SL  L++      ++ S L+ +    P+
Sbjct: 154 TCRNLKELDLRESDVDDV-SGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 316 LKYLSLSGSTLGTNSSRILDQGLCPLAHLQELY------IDNNDLRGSLPWCLANTTSLR 369
           LK L L+ +      + +L +   P   L+EL           D+   L   L+    LR
Sbjct: 213 LKSLKLNRAVPLEKLATLLQR--AP--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELR 268

Query: 370 ILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEIN 429
            L   F     +   +     + +  L LS         L  L                 
Sbjct: 269 CLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYATV-QSYDLVKLLCQCP------------ 314

Query: 430 GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLE 489
                        +L+ L +     D+           +L+E  +   +     PN  L 
Sbjct: 315 -------------KLQRLWVLDYIEDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 490 NNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNIS 549
               L  +                   +L  +            + I    P++  F + 
Sbjct: 361 EQG-LVSV--------------SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 550 -----------MNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 598
                      +  LD    +   +   L+ L LS   LT ++ +++      +E LS++
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVA 464

Query: 599 NNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNNNLS 651
                      +     +LR L +    F  + +  + SK  +++ L++++ ++S
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 81.1 bits (200), Expect = 8e-16
 Identities = 60/369 (16%), Positives = 114/369 (30%), Gaps = 27/369 (7%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRG---NLCNNSILSSVA 132
           A++    + L+ LDL  +++   + +         + L  L++      +  +++   V 
Sbjct: 149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208

Query: 133 RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND--NEIDNVEVSRGYRGLRKLKSL 190
           R  +L SL L+  +    + A        LEEL       E+     S     L   K L
Sbjct: 209 RCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267

Query: 191 -DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 249
             LSG        L         L TL+L       +    + L     L+ L + D  +
Sbjct: 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ-SYDLVKLLCQCPKLQRLWVLD-YI 325

Query: 250 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF---------PHFKSLEHLDMRFARIA 300
             + L+ + S    L+ L +   E   +                    LE +     ++ 
Sbjct: 326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385

Query: 301 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSS---RILDQGLCPLAH----LQELYIDNND 353
            N + L  I  + P++    L               LD G   +      L+ L +    
Sbjct: 386 -NAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 354 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF 413
                 +       + +L V+F   +       L    S+ +L + +  F     L    
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 414 NHSKLKIFD 422
               ++   
Sbjct: 504 KLETMRSLW 512

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.8 bits (194), Expect = 5e-15
 Identities = 76/552 (13%), Positives = 154/552 (27%), Gaps = 106/552 (19%)

Query: 106 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 164
               + +  +  +    C     ++V  R   + S+ L                 ++   
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG-----------KPHFADFNL 84

Query: 165 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 224
           +           +         L+ + L  + + D             L  +        
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-----------CLELI-------- 125

Query: 225 ATLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 283
                     +F N + L L          L +I +   +LK L +   +V+ V SG   
Sbjct: 126 --------AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV-SGHWL 176

Query: 284 PHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 339
            HF     SL  L++      ++ S L+ +    P+LK L L+ +      + +L +   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--A 234

Query: 340 PLAHLQELY------IDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
           P   L+EL           D+   L   L+    LR L   F     +   +     + +
Sbjct: 235 P--QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCSRL 291

Query: 394 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 453
             L LS         L  L                              +L+ L +    
Sbjct: 292 TTLNLSYATV-QSYDLVKLLCQCP-------------------------KLQRLWVLDYI 325

Query: 454 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW---------LLENNTKLEFL--YLVND 502
            D+           +L+E  +   +     PN          +     KLE +  +    
Sbjct: 326 EDA-GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

Query: 503 SLAGPFRLPIHSHKRLRFLDVSNNNFQG--HIPVEIGDI--------LPSLVYFNISMNA 552
           + A        +   +    +     +   ++ +E  DI           L   ++S   
Sbjct: 385 TNAA-LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL 443

Query: 553 LDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIF 611
            D            ++ L ++    +     H+   C +L  L + +       + +   
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503

Query: 612 SLRNLRWLLLEG 623
            L  +R L +  
Sbjct: 504 KLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 69.9 bits (171), Expect = 3e-12
 Identities = 63/364 (17%), Positives = 125/364 (34%), Gaps = 51/364 (14%)

Query: 74  LNASLFTPFQQLESLDLSW-----------NNIAGCAENEGLERLSRLSKLKKLDLRGNL 122
             A++   F ++ S++L             +   G          S  + L+++ L+  +
Sbjct: 57  SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116

Query: 123 CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEF-DSLSNLEELDINDNEIDNVE---V 177
             +  L  +A+   +   L LS      +        +  NL+ELD+ ++++D+V    +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176

Query: 178 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF-PSLNTLHLESNNFTATLTTTQEL-HN 235
           S        L SL++S +        L+ + +  P+L +L L   N    L     L   
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL---NRAVPLEKLATLLQR 233

Query: 236 FTNLEYLTLDDSSLHI--SLLQSIGSIFPSLKNL-SMSGCEVNGVLSGQG-FPHFKSLEH 291
              LE L     +  +   +   +       K L  +SG            +     L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 292 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA----HLQEL 347
           L++ +A +   +  L  +    P L+ L +           I D GL  LA     L+EL
Sbjct: 294 LNLSYATV--QSYDLVKLLCQCPKLQRLWV--------LDYIEDAGLEVLASTCKDLREL 343

Query: 348 YIDNNDLRGSLPWCLANT-----------TSLRILDVSFNQLTGSISSSPLVHLTSIEEL 396
            +  ++    +   +A T             L  +     Q+T +   +   +  ++   
Sbjct: 344 RVFPSE-PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402

Query: 397 RLSN 400
           RL  
Sbjct: 403 RLCI 406

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 66.8 bits (163), Expect = 2e-11
 Identities = 53/297 (17%), Positives = 96/297 (32%), Gaps = 30/297 (10%)

Query: 76  ASLFTPFQQLESLDLS--WNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR 133
           A+L     QLE L        +     +     LS   +L+ L    +     + +  + 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
            S LT+L+LS+  +Q     K       L+ L + D  I++  +       + L+ L + 
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346

Query: 194 GVGIRDGNK--------LLQSMGSFPSLNTLHLESNNFT-ATLTTTQELHNFTNLEYLTL 244
                            L+      P L ++       T A L T     N  N+    L
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI--ARNRPNMTRFRL 404

Query: 245 DDSSLHISL----------LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
                                +I      L+ LS+SG   + V    G  + K +E L +
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGT-YAKKMEMLSV 463

Query: 295 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 351
            FA  +     +  +     SL+ L +     G  +          L  ++ L++ +
Sbjct: 464 AFAGDSDLG--MHHVLSGCDSLRKLEIRDCPFGDKALLAN---ASKLETMRSLWMSS 515

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 75/564 (13%), Positives = 158/564 (28%), Gaps = 110/564 (19%)

Query: 234 HNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 293
           +         +   + +     ++   FP ++++ + G            PHF     + 
Sbjct: 38  YEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK-----------PHFADFNLVP 86

Query: 294 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA----HLQELYI 349
             +        +++ +  S   L+ + L           + D  L  +A    + + L +
Sbjct: 87  DGWG--GYVYPWIEAMSSSYTWLEEIRLKRMV-------VTDDCLELIAKSFKNFKVLVL 137

Query: 350 DNNDL--RGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL----TSIEELRLSNNHF 403
            + +      L    A   +L+ LD+  + +   +S   L H     TS+  L +S    
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 404 RI-PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 462
            +   +LE L                               LKSL L+            
Sbjct: 197 EVSFSALERLVTRCP-------------------------NLKSLKLNRAVPLE-KLATL 230

Query: 463 LYHQHELKEAELSHIKMIGEFPNW-----LLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 517
           L    +L+E              +      L    +L  L    D++            R
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS---- 573
           L  L++S    Q +  V++    P L    +     D  +         L+ L +     
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 574 -----NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI-FSLRNLRWLLLEGNHFV 627
                N  LT +    ++M C  LE +      +       I  +  N+           
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF-------- 402

Query: 628 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 687
                 L         YL    L       + + K L+ + +     +            
Sbjct: 403 -----RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKK 457

Query: 688 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYL 746
           +++L ++    S           +   H+                C SL  L++    + 
Sbjct: 458 MEMLSVAFAGDSDL--------GMH--HVLSG-------------CDSLRKLEIRDCPFG 494

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNL 770
           + ++      L  +  L ++  ++
Sbjct: 495 DKALLANASKLETMRSLWMSSCSV 518

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 4e-06
 Identities = 59/451 (13%), Positives = 126/451 (27%), Gaps = 76/451 (16%)

Query: 536 IGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 595
             D       +   +     ++ SS+     L+ + L    +T +  + +A    N + L
Sbjct: 79  FADFNLVPDGWGGYVYPWIEAMSSSYTW---LEEIRLKRMVVTDDCLELIAKSFKNFKVL 135

Query: 596 SLSN-NSLKGHIFSRIFS-LRNLRWLLLEGNHFVGEIPQSLS------------------ 635
            LS+         + I +  RNL+ L L  +         LS                  
Sbjct: 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195

Query: 636 -------------KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM------PKNHLEG 676
                        +C +LK L LN      K+   L     L+ +         +  +  
Sbjct: 196 SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255

Query: 677 PIPVEFCRLDSLQIL----DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 732
            + V       L+ L    D     +      C     +  ++LS   +           
Sbjct: 256 GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC---SRLTTLNLSYATVQSYDLVKLLCQ 312

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP---------IQLCR-LN 782
           C  L  L +     +  +         L  L +  +      P         + +     
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 783 QLQLL-----DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK--TSFSISG-PQGSV 834
           +L+ +      +++  L  +  +  + T          +PD               +   
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432

Query: 835 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNL 890
           + + L +    T +  + Y G     +  L ++        + H+   +     ++ L +
Sbjct: 433 DLRRLSLSGLLT-DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV---LSGCDSLRKLEI 488

Query: 891 SH-NNLTGTIPLTFSNLRHIESLDLSYNKLS 920
                    +    S L  + SL +S   +S
Sbjct: 489 RDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 39/279 (13%), Positives = 79/279 (28%), Gaps = 29/279 (10%)

Query: 560 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 619
           S+  +       +         P  +      +  + L             F+  NL   
Sbjct: 36  SWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKG--------KPHFADFNL-VP 86

Query: 620 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVMPKNHL--EG 676
              G +    I    S  + L+ + L    ++      +  + K  + +V+         
Sbjct: 87  DGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146

Query: 677 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK---NMLHGQLKEGTFF-- 731
            +        +L+ LD+ ++++                 L     + L  ++        
Sbjct: 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206

Query: 732 --NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE------VPIQLCRLNQ 783
              C +L +L L+       +   +    QL  L       E        + + L    +
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

Query: 784 LQLL----DLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 818
           L+ L    D     L  +   C   TTL+ SY    S D
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 19/164 (11%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 143
            L  + L+  N+        L  +     +K L +     + +  + ++ LS+L  L + 
Sbjct: 45  SLTYITLANINV------TDLTGIEYAHNIKDLTINNI--HATNYNPISGLSNLERLRIM 96

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG-VGIRDGNK 202
              +  S        L++L  LDI+ +  D+  ++     L K+ S+DLS    I D   
Sbjct: 97  GKDVT-SDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITD--- 151

Query: 203 LLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 246
            +  + + P L +L+++ +     +   + + +F  L  L    
Sbjct: 152 -IMPLKTLPELKSLNIQFDG----VHDYRGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 143
            LE L +   ++     ++ +  LS L+ L  LD+  +  ++SIL+ +  L  + S+ LS
Sbjct: 89  NLERLRIMGKDV----TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 199
           +N     I      +L  L+ L+I  + + +     G     KL  L      I  
Sbjct: 145 YNGAITDIMP--LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.7 bits (179), Expect = 1e-14
 Identities = 31/144 (21%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
              ++ L ++  +            +S LS L++L + G    +  + +++ L+SLT L 
Sbjct: 65  AHNIKDLTINNIHA------TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 200
           +SH+         + ++L  +  +D++ N  I ++      + L +LKSL++   G+ D 
Sbjct: 119 ISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD- 173

Query: 201 NKLLQSMGSFPSLNTLHLESNNFT 224
               + +  FP LN L+  S    
Sbjct: 174 ---YRGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 111 SKLKKLDLRGNLCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 169
           S  K   L G L  +S  + + A+++SLT + L++  +    D    +   N+++L IN+
Sbjct: 20  STFKAY-LNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTT 229
               N        GL  L+ L + G  +      + ++    SL  L +  +    ++ T
Sbjct: 76  IHATNYN---PISGLSNLERLRIMGKDVTSDK--IPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 230 TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSL 289
             +++    +  + L  +   I+ +  + +  P LK+L++    V+     +G   F  L
Sbjct: 131 --KINTLPKVNSIDLSYNGA-ITDIMPLKT-LPELKSLNIQFDGVHDY---RGIEDFPKL 183

Query: 290 EHLDMRFARIA 300
             L      I 
Sbjct: 184 NQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 17/171 (9%)

Query: 261 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLS 320
             SL  ++++   V  +    G  +  +++ L +       N + +      + +L+ L 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHAT-NYNPI----SGLSNLERLR 94

Query: 321 LSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTG 380
           + G  + ++        L  L  L  L I ++    S+   +     +  +D+S+N    
Sbjct: 95  IMGKDVTSDKI----PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 381 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 431
            I   PL  L  ++ L +  +          + +  KL    A +  I G+
Sbjct: 151 DI--MPLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.3 bits (165), Expect = 9e-13
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 8/135 (5%)

Query: 567 LQFLDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH 625
           ++ L ++N   T   P   L     NLE L +    +       +  L +L  L +  + 
Sbjct: 68  IKDLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 685
               I   ++    +  + L+ N     I   L  L  L+ + +  + +     +E    
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DF 180

Query: 686 DSLQILDISDNNISG 700
             L  L      I G
Sbjct: 181 PKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 31/182 (17%)

Query: 613 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 672
           + +L ++ L   + V ++   +    ++K L +NN + +   P  +  L  L+ + +   
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK 98

Query: 673 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 732
            +          L SL +LDIS +    S+ +                            
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN------------------------T 134

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
              + ++DLSYN     I   +  L +L  LN+  + +     I+     +L  L     
Sbjct: 135 LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQ 191

Query: 793 NL 794
            +
Sbjct: 192 TI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 32/262 (12%), Positives = 76/262 (29%), Gaps = 87/262 (33%)

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
             K   + ++ ++       +   +++SL  + +++ N++           +    +   
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT----------DLT--GIE-- 63

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 779
                          ++  L ++  +     P  I GLS L  L +   ++  +    L 
Sbjct: 64  ------------YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS 109

Query: 780 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 839
            L  L LLD+S +     I +  +                                    
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINT----------------------------------- 134

Query: 840 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 899
                             L  +  +DLS N  +  I P +  L  +++LN+  + +    
Sbjct: 135 ------------------LPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 900 PLTFSNLRHIESLDLSYNKLSG 921
            +   +   +  L      + G
Sbjct: 176 GI--EDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 30/190 (15%), Positives = 70/190 (36%), Gaps = 29/190 (15%)

Query: 610 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 669
                  +  L            + ++ +SL  + L N N++      +     ++ + +
Sbjct: 16  NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTI 73

Query: 670 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 729
              H     P+    L +L+ L I   +++         LS                   
Sbjct: 74  NNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIP---NLS------------------- 109

Query: 730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
               +SL  LD+S++  + SI   I+ L +++ ++L++N    ++   L  L +L+ L++
Sbjct: 110 --GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166

Query: 790 SDNNLHGLIP 799
             + +H    
Sbjct: 167 QFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           LS L  L +    +     P +  LT +  L++SH+    +I    + L  + S+DLSYN
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 918 KLSGKIPRQLVDLNTLAIFIVAYNNLS 944
                I   L  L  L    + ++ + 
Sbjct: 147 GAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 30/205 (14%), Positives = 62/205 (30%), Gaps = 47/205 (22%)

Query: 381 SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTP 440
           S ++     + S+  + L+N +      L  +     +K     N       N    L+ 
Sbjct: 34  STANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNIHAT-NYNPISGLS- 88

Query: 441 KFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 500
              L+ L +                  ++   ++ +           L   T L  L + 
Sbjct: 89  --NLERLRIMGK---------------DVTSDKIPN-----------LSGLTSLTLLDIS 120

Query: 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 555
           + +        I++  ++  +D+S N         I DI     LP L   NI  + +  
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNG-------AITDIMPLKTLPELKSLNIQFDGVHD 173

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGE 580
                  +   L  L   +  + G+
Sbjct: 174 Y--RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
              +  L ++      +  P I  L+ ++ L +   ++T       S L  +  LD+S++
Sbjct: 65  AHNIKDLTINNIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 918 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 947
                I  ++  L  +    ++YN     I
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           ++ L  + L+    V  +   I     I+ L +++ + T   P+  S L ++E L +   
Sbjct: 43  MNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIHATNYNPI--SGLSNLERLRIMGK 98

Query: 918 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 949
            ++      L  L +L +  ++++     I  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 79.3 bits (196), Expect = 3e-16
 Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 28/238 (11%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
           F +    +L   ++            + L+ + ++    +  +   +  +  L ++T L 
Sbjct: 23  FAETIKDNLKKKSV------TDAVTQNELNSIDQIIANNS--DIKSVQGIQYLPNVTKLF 74

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N L    D K   +L NL  L +++N++ ++      + L+KLKSL L   GI D  
Sbjct: 75  LNGNKLT---DIKPLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISD-- 126

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
             +  +   P L +L+L +N     +T    L   T L+ L+L+D+   IS +  +    
Sbjct: 127 --INGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLEDN--QISDIVPLAG-L 177

Query: 262 PSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYL 319
             L+NL +S    N +   +     K+L+ L++            Q       ++K  
Sbjct: 178 TKLQNLYLSK---NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.2 bits (193), Expect = 8e-16
 Identities = 42/273 (15%), Positives = 97/273 (35%), Gaps = 33/273 (12%)

Query: 104 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 163
           +      ++  K +L+    + +   +   L+S+  +  +++ ++     +    L N+ 
Sbjct: 17  IFSDDAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVT 71

Query: 164 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 223
           +L +N N++ +++       L+ L  L L    ++D    L S+     L +L LE N  
Sbjct: 72  KLFLNGNKLTDIK---PLANLKNLGWLFLDENKVKD----LSSLKDLKKLKSLSLEHNG- 123

Query: 224 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 283
              ++    L +   LE L L ++   I+ +  +      L  LS+     N +      
Sbjct: 124 ---ISDINGLVHLPQLESLYLGNN--KITDITVLSR-LTKLDTLSLED---NQISDIVPL 174

Query: 284 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
                L++L +    I+ +   L      + +L  L L                   L  
Sbjct: 175 AGLTKLQNLYLSKNHIS-DLRAL----AGLKNLDVLELFSQEC----LNKPINHQSNLVV 225

Query: 344 LQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
              +   +  L    P  +++       +V ++
Sbjct: 226 PNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 49/255 (19%), Positives = 90/255 (35%), Gaps = 41/255 (16%)

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
               +  N+   ++      +   +  +  +  +N+ +   +   +     N+  L L+ 
Sbjct: 23  FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNG 77

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           N L       + +L+NL WL L+ N  V ++  SL     LK L L +N +S  I   L 
Sbjct: 78  NKLTD--IKPLANLKNLGWLFLDENK-VKDL-SSLKDLKKLKSLSLEHNGIS-DIN-GLV 131

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
           +L  L+ + +  N +     +   RL  L  L + DN IS  +                 
Sbjct: 132 HLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQIS-DIVP--------------- 173

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 779
                         + L  L LS N+++  +   + GL  L  L L       +      
Sbjct: 174 ----------LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 780 RLNQLQLLDLSDNNL 794
            L     +  +D +L
Sbjct: 222 NLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 55/268 (20%), Positives = 104/268 (38%), Gaps = 36/268 (13%)

Query: 209 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLS 268
           +F      +L+  +    +T     +   +++ +  ++S   I  +Q I    P++  L 
Sbjct: 22  AFAETIKDNLKKKS----VTDAVTQNELNSIDQIIANNS--DIKSVQGIQY-LPNVTKLF 74

Query: 269 MSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGT 328
           ++G   N +   +   + K+L  L +   ++  + S L    + +  LK LSL  +    
Sbjct: 75  LNG---NKLTDIKPLANLKNLGWLFLDENKVK-DLSSL----KDLKKLKSLSLEHN---- 122

Query: 329 NSSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPL 387
               I D  GL  L  L+ LY+ NN +       L+  T L  L +  NQ++      PL
Sbjct: 123 ---GISDINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS---DIVPL 174

Query: 388 VHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSL 447
             LT ++ L LS NH      L  L     L + +  + E   +     S      L   
Sbjct: 175 AGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSN-----LVVP 226

Query: 448 SLSSNYGDSVTFPKFLYHQHELKEAELS 475
           +   N   S+  P+ +    + ++  + 
Sbjct: 227 NTVKNTDGSLVTPEIISDDGDYEKPNVK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 22/168 (13%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 +  L L+ N +        ++ L+ L  L  L L  N      LSS+  L  L 
Sbjct: 64  IQYLPNVTKLFLNGNKL------TDIKPLANLKNLGWLFLDEN--KVKDLSSLKDLKKLK 115

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIR 198
           SL L HN +    D      L  LE L + +N+I ++        L KL +L L    I 
Sbjct: 116 SLSLEHNGIS---DINGLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS 169

Query: 199 DGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 246
           D    +  +     L  L+L  N+    ++  + L    NL+ L L  
Sbjct: 170 D----IVPLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFS 209

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 20/169 (11%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 143
           +L+SL L  N I        +  L  L +L+ L L  N    + ++ ++RL+ L +L L 
Sbjct: 113 KLKSLSLEHNGI------SDINGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLE 164

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 203
            N +    D      L+ L+ L ++ N I ++       GL+ L  L+L         + 
Sbjct: 165 DNQIS---DIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELF------SQEC 212

Query: 204 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHIS 252
           L    +  S   +     N   +L T + + +  + E   +       +
Sbjct: 213 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 48/307 (15%), Positives = 92/307 (29%), Gaps = 55/307 (17%)

Query: 643 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 702
                  +                  + K  +   +      L+S+  +  ++++I  S+
Sbjct: 7   TITVPTPIKQIFS--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV 61

Query: 703 PSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 761
               Y  ++ ++ L+ N    +L +     N  +L  L L  N +   +   +  L +L 
Sbjct: 62  QGIQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLK 115

Query: 762 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESYNNNSSPDK 819
            L+L HN +     +    L QL+ L L +N +  +   S      TL    N       
Sbjct: 116 SLSLEHNGISDINGLV--HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN------- 166

Query: 820 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 879
                            +I +I                L+ L  L LS N +   +   +
Sbjct: 167 -----------------QISDIVPLAG-----------LTKLQNLYLSKNHIS-DLRA-L 196

Query: 880 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 939
             L  +  L L             SNL    ++  +   L    P  + D        V 
Sbjct: 197 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVK 254

Query: 940 YNNLSGK 946
           ++     
Sbjct: 255 WHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 47/265 (17%), Positives = 94/265 (35%), Gaps = 38/265 (14%)

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSH--IKMIGEFPNWLLENNTKLEFLYLV 500
           +    +L      SVT        + + +   ++  IK +       ++    +  L+L 
Sbjct: 25  ETIKDNLKKK---SVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVTKLFLN 76

Query: 501 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDG 555
            + L      P+ + K L +L +  N         + D+     L  L   ++  N +  
Sbjct: 77  GNKLTDIK--PLANLKNLGWLFLDENK--------VKDLSSLKDLKKLKSLSLEHNGI-- 124

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 614
           S  +   ++  L+ L L NNK+T   +   L      L+ LSL +N +       +  L 
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD--IVPLAGLT 178

Query: 615 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 674
            L+ L L  NH + ++ ++L+   +L  L L +     K      NL     +      L
Sbjct: 179 KLQNLYLSKNH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

Query: 675 EGPIPVEFCRLDSLQILDISDNNIS 699
             P  +        +  ++  +   
Sbjct: 237 VTPEIISD--DGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 44/290 (15%), Positives = 94/290 (32%), Gaps = 49/290 (16%)

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
               +      L   +++  +      L  +  I+   + ++    +++  L ++  L +
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQY--LPNVTKLFL 75

Query: 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
           + N ++  +       ++  + L +N +       +  +   L +L L +N ++  I   
Sbjct: 76  NGNKLT-DIKPLANLKNLGWLFLDENKVK---DLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY-N 812
           +  L QL  L L +N +       L RL +L  L L DN +   I      T L   Y +
Sbjct: 130 LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQNLYLS 186

Query: 813 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 872
            N                       I ++                L  L  L+L   + +
Sbjct: 187 KN----------------------HISDLRALAG-----------LKNLDVLELFSQECL 213

Query: 873 GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 922
                   NL    T+  +  +L    P   S+    E  ++ ++     
Sbjct: 214 NKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPEFT 261

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 44/243 (18%), Positives = 74/243 (30%), Gaps = 53/243 (21%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
            Q L L    L   IP H      N+  + +S +     + S  F  L  +  + +    
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 626 FVGEIPQS-LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
            +  I    L +   LK L + N               GL+           P   +   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNT--------------GLKMF---------PDLTKVYS 128

Query: 685 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN-CSSLVTLDLSY 743
            D   IL+I+DN    S+P                          F   C+  +TL L  
Sbjct: 129 TDIFFILEITDNPYMTSIP-----------------------VNAFQGLCNETLTLKLYN 165

Query: 744 NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR--LNQLQLLDLSDNNLHGLIPSC 801
           N    S+  +    ++L  + L  N     +         +   LLD+S  ++  L    
Sbjct: 166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224

Query: 802 FDN 804
            ++
Sbjct: 225 LEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 34/247 (13%), Positives = 75/247 (30%), Gaps = 45/247 (18%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           C     +   ++  +I   +PS   P S + + L +  L   +    F N  ++  + +S
Sbjct: 8   CECHQEEDFRVTCKDIQ-RIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVS 63

Query: 743 YNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNNLHGL--- 797
            +     +       LS+++H+ + +      +     + L  L+ L + +  L      
Sbjct: 64  IDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDL 123

Query: 798 --IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 855
             + S      L  + N                         +  I     + +      
Sbjct: 124 TKVYSTDIFFILEITDNP-----------------------YMTSIPVNAFQGLC----- 155

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH-IESLD 913
              +    L L  N     +     N T++  + L+ N     I    F  +      LD
Sbjct: 156 ---NETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 914 LSYNKLS 920
           +S   ++
Sbjct: 212 VSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-ARLSSLTSLHLS 143
            ++L L   ++     +      S L  + ++ +  ++    + S     LS +T + + 
Sbjct: 33  TQTLKLIETHLRTIPSHA----FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 203
           +      ID      L  L+ L I +  +                 L+++       N  
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT------DNPY 142

Query: 204 LQSM--GSFPSLN----TLHLESNNFT 224
           + S+   +F  L     TL L +N FT
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 38/241 (15%), Positives = 84/241 (34%), Gaps = 49/241 (20%)

Query: 687 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
           S Q L + + ++       F  L  I ++++S ++   QL+  +F+N S +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 746 LNGSIP-DWIDGLSQLSHLNLAHNNLEGEVP--IQLCRLNQLQLLDLSDNN-LHGLIPSC 801
               I  D +  L  L  L + +  L+   P   ++   +   +L+++DN  +  +  + 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 802 FDN-----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 855
           F        TL    N  +S     F                                  
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFN--------------------------------- 177

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQI--GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
              + L  + L+ NK +  I      G  +    L++S  ++T        +L+ + + +
Sbjct: 178 --GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 914 L 914
            
Sbjct: 236 T 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 16/196 (8%)

Query: 480 IGEFPNWLLENNTKLEFLYL-VNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPV 534
           +   P+    N   +  +Y+ ++ +L    +  F    ++  ++  +++ N     +I  
Sbjct: 43  LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----YNLSKVTHIEIRNTRNLTYIDP 98

Query: 535 EIGDILPSLVYFNISMNALDGSIP--SSFGNVIFLQFLDLSNNKLTGEIPDH-LAMCCVN 591
           +    LP L +  I    L    P  +   +      L++++N     IP +     C  
Sbjct: 99  DALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 592 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNN 649
              L L NN     +    F+   L  + L  N ++  I +       S    L ++  +
Sbjct: 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216

Query: 650 LSGKIPRWLGNLKGLQ 665
           ++    + L +LK L 
Sbjct: 217 VTALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 35/208 (16%), Positives = 72/208 (34%), Gaps = 36/208 (17%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSR-----LSKLKKLDLRGNLCNNSIL 128
           + +  F+    +  + +S +          L++L       LSK+  +++R    N   L
Sbjct: 46  IPSHAFSNLPNISRIYVSIDV--------TLQQLESHSFYNLSKVTHIEIR----NTRNL 93

Query: 129 SSVAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG 183
           + +       L  L  L + +  L+   D  +  S      L+I DN          ++G
Sbjct: 94  TYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153

Query: 184 LRK-LKSLDLSGVGIRDGNKLLQSMGSF--PSLNTLHLESNNFTATLTTTQELHNFTNLE 240
           L     +L L   G       +Q   +F    L+ ++L  N +   +        ++   
Sbjct: 154 LCNETLTLKLYNNGFTS----VQG-YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 241 YLTLDDSSLHISLLQSI-GSIFPSLKNL 267
            L +  +S     + ++       LK L
Sbjct: 209 LLDVSQTS-----VTALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 38/291 (13%), Positives = 73/291 (25%), Gaps = 82/291 (28%)

Query: 123 CNNSILSSVARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY 181
                +  +  L  S  +L L    L+ +I +  F +L N+  + ++ +           
Sbjct: 18  VTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID----------- 65

Query: 182 RGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFTN 238
                L+ L+                 SF     +  + + +      +           
Sbjct: 66  ---VTLQQLE---------------SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKE 103

Query: 239 LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFAR 298
           L                      P LK L +    +                 L++    
Sbjct: 104 L----------------------PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI---- 137

Query: 299 IALNTSFLQIIGESM-----PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYI-DNN 352
              +  ++  I  +           L L       N    +         L  +Y+  N 
Sbjct: 138 --TDNPYMTSIPVNAFQGLCNETLTLKLYN-----NGFTSVQGYAFNGTKLDAVYLNKNK 190

Query: 353 DLRGSLPWCLAN-TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
            L            +   +LDVS   +T ++ S  L HL     L   N  
Sbjct: 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE---LIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLS 915
           L  ++ + +S +  +  +      NL+++  + + +      I       L  ++ L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 916 YNKLSGKIP--RQLVDLNTLAIFIVAYNNLSGKIPE 949
              L    P   ++   +   I  +  N     IP 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 30/146 (20%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN----------- 121
           Y++         L+ L +    +        L ++        L++  N           
Sbjct: 95  YIDPDALKELPLLKFLGIFNTGL---KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 122 -----------LCNNSI--LSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSL-SNLEELD 166
                      L NN    +   A   + L +++L+ N     ID   F  + S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 167 INDNEIDNVEVSRGYRGLRKLKSLDL 192
           ++   +  +  S+G   L++L + + 
Sbjct: 212 VSQTSVTALP-SKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 23/142 (16%), Positives = 50/142 (35%), Gaps = 9/142 (6%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILD 372
           PS + L L  + L      I       L ++  +Y+  +     L      N + +  ++
Sbjct: 31  PSTQTLKLIETHL----RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 373 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEI 432
           +   +    I    L  L  ++ L + N   ++   L  +++     I +  +N     I
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 433 NES--HSLTPKFQLKSLSLSSN 452
             +    L    +  +L L +N
Sbjct: 147 PVNAFQGLCN--ETLTLKLYNN 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 18/187 (9%)

Query: 492 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 551
                L+L  + L       +  + RL  L++        + V     LP L   ++S N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHN 87

Query: 552 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIF 607
            L  S+P     +  L  LD+S N+LT  +P      L      L+ L L  N LK  + 
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGL----GELQELYLKGNELK-TLP 140

Query: 608 SRIF-SLRNLRWLLLEGNHFVGEIPQSL-SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
             +      L  L L  N+   E+P  L +   +L  L L  N+L   IP+       L 
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLP 198

Query: 666 HIVMPKN 672
              +  N
Sbjct: 199 FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 49/213 (23%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 560 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRW 618
               V     ++     LT  +P  L     +   L LS N L              L  
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLY-TFSLATLMPYTRLTQ 59

Query: 619 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 678
           L L+    + ++         L  L L++N L   +P     L  L  + +  N L   +
Sbjct: 60  LNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-L 115

Query: 679 PVE-FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSS 735
           P+     L  LQ L +  N +  +LP     P   ++++ L+ N L  +L  G      +
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 173

Query: 736 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN 768
           L TL L  N L  +IP    G   L    L  N
Sbjct: 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 42/182 (23%), Positives = 66/182 (36%), Gaps = 32/182 (17%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
            + +   P+ +L  L+L    +        L+    L  L  LDL  N      L S+  
Sbjct: 46  FSLATLMPYTRLTQLNLDRAELT------KLQVDGTLPVLGTLDLSHNQ-----LQSLPL 94

Query: 132 --ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKS 189
               L +LT L +S N L  S+       L  L+EL +  NE+  +          KL+ 
Sbjct: 95  LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEK 152

Query: 190 LDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 244
           L L+       N  L  +  G      +L+TL L+ N+     T  +       L +  L
Sbjct: 153 LSLA------NNN-LTELPAGLLNGLENLDTLLLQENSLY---TIPKGFFGSHLLPFAFL 202

Query: 245 DD 246
             
Sbjct: 203 HG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 32/222 (14%)

Query: 211 PSLNTLHLESNNFTA----TLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKN 266
            S   ++ +  N TA        T  LH   N            +       +       
Sbjct: 10  ASHLEVNCDKRNLTALPPDLPKDTTILHLSEN-----------LLYTFSL--ATLMPYTR 56

Query: 267 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTL 326
           L+    +   +   Q       L  LD+   ++      L ++G+++P+L  L +S + L
Sbjct: 57  LTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL----QSLPLLGQTLPALTVLDVSFNRL 112

Query: 327 GTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSS 385
            +     L      L  LQELY+  N+L+ +LP   L  T  L  L ++ N LT  + + 
Sbjct: 113 TSLPLGALRG----LGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAG 166

Query: 386 PLVHLTSIEELRLSNNHFR-IPVSLEPLFNHSKLKIFDAKNN 426
            L  L +++ L L  N    IP   +  F    L       N
Sbjct: 167 LLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 20/190 (10%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVNLEFL 595
           D+       ++S N L     ++      L  L+L   +LT ++     L      L  L
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTL----PVLGTL 82

Query: 596 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNL 650
            LS+N L+  +     +L  L  L +  N        SL          L+ LYL  N L
Sbjct: 83  DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-----TSLPLGALRGLGELQELYLKGNEL 136

Query: 651 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL 709
               P  L     L+ + +  N+L   +P      L++L  L + +N++       F   
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 710 SIKQVHLSKN 719
            +    L  N
Sbjct: 196 LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 48/216 (22%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
                L LS N L       +   ++L+ LNL    L  ++ +    L  L  LDLS N 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQ 88

Query: 794 LHGLIPSCFDN----TTLHESYNNNSS-PDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 848
           L  L P         T L  S+N  +S P                               
Sbjct: 89  LQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--------------------------- 120

Query: 849 IAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNL 906
                  R L  L  L L  N+L   +PP +     +++ L+L++NNLT  +P    + L
Sbjct: 121 -------RGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 907 RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
            ++++L L  N L   IP+     + L  F   + N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLP-FAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)

Query: 687 SLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKE-GTFFNCSSLVTLDLSYN 744
              IL +S+N +     +   P + + Q++L +     +L +         L TLDLS+N
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA----ELTKLQVDGTLPVLGTLDLSHN 87

Query: 745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
            L  S+P     L  L+ L+++ N L       L  L +LQ L L  N L  L P     
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 805 TT 806
           T 
Sbjct: 147 TP 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 731 FNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
            +   S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 790 SDNNLHGLIPSCFDN----TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 845
               L  L            TL  S+N   S                             
Sbjct: 63  DRAELTKL--QVDGTLPVLGTLDLSHNQLQS----------------------------- 91

Query: 846 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFS 904
              +    Q   L  L  LD+S N+L   +P      L  +Q L L  N L    P   +
Sbjct: 92  ---LPLLGQT--LPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 905 NLRHIESLDLSYNKLSGKIP----RQLVDLNTL 933
               +E L L+ N L+ ++P      L +L+TL
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 49/239 (20%), Positives = 74/239 (30%), Gaps = 69/239 (28%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
                L++  N L       L   T L  L++   +LT          L  +  L LS+N
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT---KLQVDGTLPVLGTLDLSHN 87

Query: 402 HFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPK 461
             +   SL  L                        +L     L  L +S N         
Sbjct: 88  QLQ---SLPLLG----------------------QTLP---ALTVLDVSFN--------- 110

Query: 462 FLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL----AGPF-RLPIHSHK 516
                       L+ +      P   L    +L+ LYL  + L     G     P     
Sbjct: 111 -----------RLTSL------PLGALRGLGELQELYLKGNELKTLPPGLLTPTP----- 148

Query: 517 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
           +L  L ++NNN    +P  + + L +L    +  N+L  +IP  F     L F  L  N
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 46/248 (18%), Positives = 79/248 (31%), Gaps = 67/248 (27%)

Query: 123 CNNSILSSVAR--LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C+   L+++        T LHLS N+L  +         + L +L+++  E+  ++V   
Sbjct: 17  CDKRNLTALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--- 72

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQSMGSF---PSLNTLHLESNNFTATLTTTQELHNFT 237
              L  L +LDLS       N+L          P+L  L +  N  T+       L    
Sbjct: 73  DGTLPVLGTLDLS------HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA--LRGLG 124

Query: 238 NLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
            L+ L L  +      L+++   +                            LE L    
Sbjct: 125 ELQELYLKGNE-----LKTLPPGLLTPTPK----------------------LEKLS--- 154

Query: 297 ARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
               L  + L  +       + +L  L L       NS   + +G      L   ++  N
Sbjct: 155 ----LANNNLTELPAGLLNGLENLDTLLLQ-----ENSLYTIPKGFFGSHLLPFAFLHGN 205

Query: 353 DLRGSLPW 360
                 PW
Sbjct: 206 ------PW 207

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVE-FCRLD 686
            +PQSL   S    L L++NNLS     W    L  L  +++  NHL   I  E F  + 
Sbjct: 32  NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 687 SLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 744
           +L+ LD+S N++  +L    F  L +++ + L  N +   +    F + + L  L LS N
Sbjct: 89  NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 745 YLNGSIP----DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQL--LDLSDNNLH 795
            ++   P       + L +L  L+L+ N L+      L +L       L L +N L 
Sbjct: 147 QIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 42/177 (23%), Positives = 65/177 (36%), Gaps = 31/177 (17%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS----SVARLSSLTSL 140
              LDLS NN++         RL+ L  L        L +N +      +   + +L  L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSL-------LLSHNHLNFISSEAFVPVPNLRYL 93

Query: 141 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDG 200
            LS N L  ++D   F  L  LE L + +N I  V+    +  + +L+ L LS       
Sbjct: 94  DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLS------Q 145

Query: 201 NKL-------LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
           N++       ++     P L  L L SN           L +   L     +   LH
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKL-----KKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 14/141 (9%)

Query: 687 SLQILDISDNNISGSLPS--CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
              +LD+S NN+S  L +      L+ +  + LS N L+  +    F    +L  LDLS 
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 744 NYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
           N+L+ ++ +++   L  L  L L +N++          + QLQ L LS N +        
Sbjct: 98  NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 803 DN-------TTLHESYNNNSS 816
            +         L  S N    
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKK 177

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 21/155 (13%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSV----- 131
            T    L SL LS N++        +       +  L+ LDL  N      L ++     
Sbjct: 60  PTRLTNLHSLLLSHNHL------NFISSEAFVPVPNLRYLDLSSNH-----LHTLDEFLF 108

Query: 132 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKS 189
           + L +L  L L +N +   +D   F+ ++ L++L ++ N+I    V   +    L KL  
Sbjct: 109 SDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLML 167

Query: 190 LDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 224
           LDLS   ++               N L+L +N   
Sbjct: 168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNH 625
              LDLS+N L+    +       NL  L LS+N L   I S  F  + NLR+L L  NH
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNH 99

Query: 626 FVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE---- 681
                    S   +L+ L L NN++         ++  LQ + + +N +    PVE    
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKD 158

Query: 682 FCRLDSLQILDISDNNISGSLPSCFYPLS---IKQVHLSKNMLH 722
             +L  L +LD+S N +     +    L       ++L  N L 
Sbjct: 159 GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 47/215 (21%), Positives = 71/215 (33%), Gaps = 61/215 (28%)

Query: 734 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 791
           S    LDLS+N L+    +W    L+ L  L L+HN+L   +  +    +  L+ LDLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N+LH L    F +                                               
Sbjct: 98  NHLHTLDEFLFSD----------------------------------------------- 110

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSN---LR 907
                 L  L  L L  N +V  +      ++ ++Q L LS N ++        +   L 
Sbjct: 111 ------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163

Query: 908 HIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
            +  LDLS NKL       L  L       +  +N
Sbjct: 164 KLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 313 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRIL 371
           + +L  L LS + L   SS         + +L+ L + +N L  +L     ++  +L +L
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVP----VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVL 117

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHF-RIPV-SLEPLFNHSKLKIFDAKNNEIN 429
            +  N +   +  +    +  +++L LS N   R PV  ++      KL + D  +N++ 
Sbjct: 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

Query: 430 GEINESHSLTPKFQLKSLSLSSN 452
                     P +    L L +N
Sbjct: 177 KLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 69/248 (27%)

Query: 732 NCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDL 789
           NC  +   L  S   L  ++P  +   S  + L+L+HNNL          RL  L  L L
Sbjct: 15  NCLCASNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL 71

Query: 790 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 849
           S N+L+ +    F                                               
Sbjct: 72  SHNHLNFISSEAFVP--------------------------------------------- 86

Query: 850 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRH 908
                   +  L  LDLS N L   +   +  +L  ++ L L +N++       F ++  
Sbjct: 87  --------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 909 IESLDLSYNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY-- 962
           ++ L LS N++S + P +       L  L +  ++ N L  K+P    Q       +   
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195

Query: 963 -DGNPFLC 969
              NP  C
Sbjct: 196 LHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 484 PNWLLENNTKLEFLYLVNDSL----AGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGD 538
             W     T L  L L ++ L    +  F  +P      LR+LD+S+N+    +   +  
Sbjct: 56  AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-----NLRYLDLSSNHLH-TLDEFLFS 109

Query: 539 ILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
            L +L    +  N +   +   +F ++  LQ L LS N+++   P               
Sbjct: 110 DLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPV-------------- 153

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK--GLYLNNNNL 650
                   +      L  L  L L  N         L K  +    GLYL+NN L
Sbjct: 154 -------ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 16/145 (11%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 373
                L LS + L    +   +     L +L  L + +N L            +LR LD+
Sbjct: 39  SYTALLDLSHNNLSRLRA---EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95

Query: 374 SFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDAKNNEI--- 428
           S N L  ++       L ++E L L NNH      ++   F   ++L+      N+I   
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRF 151

Query: 429 -NGEINESHSLTPKFQLKSLSLSSN 452
               I + + L    +L  L LSSN
Sbjct: 152 PVELIKDGNKLP---KLMLLDLSSN 173

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 38/174 (21%), Positives = 63/174 (36%), Gaps = 28/174 (16%)

Query: 160 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF---PSLNT 215
           S    LD++ N +  +        L  L SL LS       N L   S  +F   P+L  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS------HNHLNFISSEAFVPVPNLRY 92

Query: 216 LHLESNNFTATLTTTQE--LHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKNLSMS 270
           L L SN+    L T  E    +   LE L L ++  HI ++    + F     L+ L +S
Sbjct: 93  LDLSSNH----LHTLDEFLFSDLQALEVLLLYNN--HIVVVDR--NAFEDMAQLQKLYLS 144

Query: 271 GCEVNGVLSG--QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 322
             +++       +       L  LD+   ++           + +P+     L 
Sbjct: 145 QNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 4e-05
 Identities = 36/172 (20%), Positives = 62/172 (36%), Gaps = 17/172 (9%)

Query: 210 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF---PSLKN 266
                 L L  NN +  L         TNL  L L  +  H++ + S    F   P+L+ 
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHN--HLNFISS--EAFVPVPNLRY 92

Query: 267 LSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIAL--NTSFLQIIGESMPSLKYLSLSGS 324
           L +S   ++  L    F   ++LE L +    I +    +F     E M  L+ L LS +
Sbjct: 93  LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAF-----EDMAQLQKLYLSQN 146

Query: 325 TLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFN 376
            +      ++      L  L  L + +N L+      L    +     +  +
Sbjct: 147 QISRFPVELIK-DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 43/194 (22%)

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP-LFNH-SKLKIFDA 423
           +   +LD+S N L+   +      LT++  L LS+NH      +    F     L+  D 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN---FISSEAFVPVPNLRYLDL 95

Query: 424 KNNEINGEINES--HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 481
            +N ++  ++E     L     L+ L L +N                       HI ++ 
Sbjct: 96  SSNHLH-TLDEFLFSDLQ---ALEVLLLYNN-----------------------HIVVV- 127

Query: 482 EFPNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 537
                  E+  +L+ LYL  + +        +   +   +L  LD+S+N  +  +P+   
Sbjct: 128 --DRNAFEDMAQLQKLYLSQNQISRFPVELIK-DGNKLPKLMLLDLSSNKLK-KLPLTDL 183

Query: 538 DILPSLVYFNISMN 551
             LP+ V   + ++
Sbjct: 184 QKLPAWVKNGLYLH 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 73.5 bits (181), Expect = 2e-14
 Identities = 39/193 (20%), Positives = 70/193 (36%), Gaps = 26/193 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
                  +L   ++        L     LS ++  +   +  N   L+ +   ++L  LH
Sbjct: 18  LANAVKQNLGKQSV------TDLVSQKELSGVQNFNGDNS--NIQSLAGMQFFTNLKELH 69

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           LSHN +    D      L+ LEEL +N N + N+           L  L L    +RD  
Sbjct: 70  LSHNQIS---DLSPLKDLTKLEELSVNRNRLKNLNGI----PSACLSRLFLDNNELRD-- 120

Query: 202 KLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIF 261
               S+    +L  L + +N     L +   L   + LE L L  +   I+    +    
Sbjct: 121 --TDSLIHLKNLEILSIRNNK----LKSIVMLGFLSKLEVLDLHGN--EITNTGGLTR-L 171

Query: 262 PSLKNLSMSGCEV 274
             +  + ++G + 
Sbjct: 172 KKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 38/200 (19%), Positives = 83/200 (41%), Gaps = 23/200 (11%)

Query: 104 LERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 163
           +     L+   K +L     + + L S   LS + + +  ++ +Q           +NL+
Sbjct: 12  VFPDPGLANAVKQNLGKQ--SVTDLVSQKELSGVQNFNGDNSNIQ---SLAGMQFFTNLK 66

Query: 164 ELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 223
           EL ++ N+I ++      + L KL+ L ++   +++ N +         L+ L L++N  
Sbjct: 67  ELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKNLNGI-----PSACLSRLFLDNNE- 117

Query: 224 TATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 283
              L  T  L +  NLE L++ ++   +  +  +G     L+ L + G   N + +  G 
Sbjct: 118 ---LRDTDSLIHLKNLEILSIRNNK--LKSIVMLGF-LSKLEVLDLHG---NEITNTGGL 168

Query: 284 PHFKSLEHLDMRFARIALNT 303
              K +  +D+   +     
Sbjct: 169 TRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 19/143 (13%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
           F  L+ L LS N I        L  L  L+KL++L +  N      L+ +     L+ L 
Sbjct: 62  FTNLKELHLSHNQI------SDLSPLKDLTKLEELSVNRN--RLKNLNGIPSAC-LSRLF 112

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L +N L+   D      L NLE L I +N++ ++        L KL+ LDL G  I +  
Sbjct: 113 LDNNELR---DTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN-- 164

Query: 202 KLLQSMGSFPSLNTLHLESNNFT 224
                +     +N + L      
Sbjct: 165 --TGGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 28/197 (14%)

Query: 233 LHNFTNLEYLTLDDSSL-HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 291
                N     L   S+  +   +        ++N +      + + S  G   F +L+ 
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKE----LSGVQNFNGDN---SNIQSLAGMQFFTNLKE 67

Query: 292 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 351
           L +   +I+ + S L    + +  L+ LS++ +       R+ +    P A L  L++DN
Sbjct: 68  LHLSHNQIS-DLSPL----KDLTKLEELSVNRN-------RLKNLNGIPSACLSRLFLDN 115

Query: 352 NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 411
           N+LR +    L +  +L IL +  N+L    S   L  L+ +E L L  N      +   
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLK---SIVMLGFLSKLEVLDLHGNEIT---NTGG 167

Query: 412 LFNHSKLKIFDAKNNEI 428
           L    K+   D    + 
Sbjct: 168 LTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 40/228 (17%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
               +L    +T  +          ++  +  N++++    + +    NL+ L L  N  
Sbjct: 21  AVKQNLGKQSVTDLVS--QK-ELSGVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQ- 74

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
           + ++   L   + L+ L +N N L   +   + +   L  + +  N L          L 
Sbjct: 75  ISDLS-PLKDLTKLEELSVNRNRLK-NLNG-IPSAC-LSRLFLDNNELRDTDS--LIHLK 128

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           +L+IL I +N +           SI  +                   S L  LDL  N +
Sbjct: 129 NLEILSIRNNKLK----------SIVMLG----------------FLSKLEVLDLHGNEI 162

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
             +    +  L +++ ++L       E       L     +   D   
Sbjct: 163 T-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 36/191 (18%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 570
           P          ++   +    +  +    L  +  FN   + +     +       L+ L
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNI--QSLAGMQFFTNLKEL 68

Query: 571 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR--NLRWLLLEGNHFVG 628
            LS+N+++ ++   L      LE LS++ N L       +  +    L  L L+ N    
Sbjct: 69  HLSHNQIS-DLSP-LKDL-TKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNEL-- 118

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
               SL    +L+ L + NN L   I   LG L  L+ + +  N +     +   RL  +
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKV 174

Query: 689 QILDISDNNIS 699
             +D++     
Sbjct: 175 NWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             S +   +   + +  S+   +   + L  L+L+HN +    P  L  L +L+ L ++ 
Sbjct: 39  ELSGVQNFNGDNSNIQ-SLAG-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94

Query: 792 NNLHGLIPSCFDN-TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 850
           N L  L        + L    N     D       S+                       
Sbjct: 95  NRLKNLNGIPSACLSRLFLDNNELRDTD-------SLIH--------------------- 126

Query: 851 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 910
                  L  L  L +  NKL   I   +G L++++ L+L  N +T T  L  + L+ + 
Sbjct: 127 -------LKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGL--TRLKKVN 175

Query: 911 SLDLSYNKLS 920
            +DL+  K  
Sbjct: 176 WIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 48/274 (17%), Positives = 79/274 (28%), Gaps = 58/274 (21%)

Query: 385 SPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQL 444
            P   L +  +  L          L      S ++ F+  N+ I   +      T    L
Sbjct: 13  FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNIQ-SLAGMQFFT---NL 65

Query: 445 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 504
           K L LS N                    ++S +          L++ TKLE L +  + L
Sbjct: 66  KELHLSHN--------------------QISDLSP--------LKDLTKLEELSVNRNRL 97

Query: 505 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-----LPSLVYFNISMNALDGSIPS 559
                L       L  L + NN         + D      L +L   +I  N L  SI  
Sbjct: 98  K---NLNGIPSACLSRLFLDNNE--------LRDTDSLIHLKNLEILSIRNNKLK-SI-V 144

Query: 560 SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 619
             G +  L+ LDL  N++T             + ++ L+              L     +
Sbjct: 145 MLGFLSKLEVLDLHGNEITNTGGLT---RLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

Query: 620 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK 653
                 ++   P  +S   S     +        
Sbjct: 202 KDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 39/193 (20%), Positives = 73/193 (37%), Gaps = 24/193 (12%)

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP-SCFDN-TTLHESY 811
             GL+     NL   ++   V  +   L+ +Q  +  ++N+  L     F N   LH S+
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH 72

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
           N  S           +S  +   + + L +     KN+     G   + L+ L L  N+L
Sbjct: 73  NQIS----------DLSPLKDLTKLEELSVNRNRLKNL----NGIPSACLSRLFLDNNEL 118

Query: 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 931
                  + +L  ++ L++ +N L   + L    L  +E LDL  N+++      L  L 
Sbjct: 119 R-DTDS-LIHLKNLEILSIRNNKLKSIVML--GFLSKLEVLDLHGNEITNTGG--LTRLK 172

Query: 932 TLAIFIVAYNNLS 944
            +    +      
Sbjct: 173 KVNWIDLTGQKCV 185

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 74.6 bits (183), Expect = 9e-14
 Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 22/284 (7%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 135
             LF    Q+  LDL +  +      +    + +   L+ L+ R  + +  +        
Sbjct: 286 PILFPFAAQIRKLDLLYALLET---EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342

Query: 136 SLTSLHLSHNILQGSIDAKE-----------FDSLSNLEELDINDNEIDNVEVSRGYRGL 184
            L  L +     +  ++ +E                 LE + +  ++I N  +      L
Sbjct: 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL 402

Query: 185 RKLKSLDLSGVGIRDG-------NKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL-HNF 236
           + L    L  +   +        N +   +     L            T      +    
Sbjct: 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
            N+ ++ L         L       P+L+ L M GC  +            SL +L ++ 
Sbjct: 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

Query: 297 ARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 340
            R ++    L  +     +++ +             I +     
Sbjct: 523 YRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPA 566

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.9 bits (176), Expect = 6e-13
 Identities = 59/426 (13%), Positives = 125/426 (29%), Gaps = 79/426 (18%)

Query: 43  CCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSW---------- 92
           C +W  ++        + L  + T           L   F  L SL L            
Sbjct: 41  CRRWFKIDSETREHVTMALCYTAT--------PDRLSRRFPNLRSLKLKGKPRAAMFNLI 92

Query: 93  NNIAGCAENEGLERLSR-LSKLKKLDLRGNLCNNSILSSVAR--LSSLTSLHLSH----- 144
               G      +  +S  L +LK +  R  + ++  L  +A+     L +L L       
Sbjct: 93  PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152

Query: 145 -----NILQGSIDAKEFD-------------------SLSNLEELDIND---NEIDNVEV 177
                +I+      K                        ++LE L+       +I   ++
Sbjct: 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212

Query: 178 SRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 237
               R  R L S+ +    I +     ++  +        L  +     +   ++  N  
Sbjct: 213 ETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED-----IGMPEKYMNLV 267

Query: 238 NLEYLT-LDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
               L  L  S +  + +  +      ++ L +    +             +LE L+ R 
Sbjct: 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327

Query: 297 ARIALNTSFLQIIGESMPSLKYLSLSG----STLGTNSSRILDQGLCPLAH----LQELY 348
               +    L+++ +    LK L +        +      +  +GL  LA     L+ + 
Sbjct: 328 ---VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 349 IDNNDLR----GSLPWCLANTTSLRILDVSF-NQLTGSIS----SSPLVHLTSIEELRLS 399
           +  +D+      S+   L N    R++ +    ++T         S L+    +      
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 400 NNHFRI 405
                +
Sbjct: 445 LRQGGL 450

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.4 bits (167), Expect = 7e-12
 Identities = 76/540 (14%), Positives = 166/540 (30%), Gaps = 82/540 (15%)

Query: 106 RLSRLSKLKKLDLRGNLCNNSILSSVA-RLSSLTSLHLSHNILQGSIDAKEFDSLSNLEE 164
           R  ++    +  +   LC  +    ++ R  +L SL L                 +    
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKG-----------KPRAAMFNL 91

Query: 165 LDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFT 224
           +  N        V+     LR+LKS+    + + D +    +      L TL L+  +  
Sbjct: 92  IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151

Query: 225 ATLTTTQELHNFTNLEYLTLDDSSLH---ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 281
            T      + +   ++ L +++SS        L  +     SL+ L+    E   + S +
Sbjct: 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPK 210

Query: 282 GFPHF----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ- 336
                    +SL  + +    I     F +       +L+                    
Sbjct: 211 DLETIARNCRSLVSVKVGDFEILELVGFFKA----AANLEEFCGGSLNEDIGMPEKYMNL 266

Query: 337 -GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 395
                L  L   Y+  N++    P+       +R LD+ +  L      + +    ++E 
Sbjct: 267 VFPRKLCRLGLSYMGPNEMPILFPFA----AQIRKLDLLYALLETEDHCTLIQKCPNLEV 322

Query: 396 LRLSNNHFRIPVSLEPLFNH-SKLKIFD-AKNNEINGEINESHSLTPK---------FQL 444
           L   N        LE L  +  +LK     +  +  G  +E   ++ +          +L
Sbjct: 323 LETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 445 KSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSL 504
           + +++  +   + +      +   L +  L  +       +  L+N              
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG------------- 427

Query: 505 AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV 564
               R  +   K+LR                + D+          ++ +    P+     
Sbjct: 428 ---VRSLLIGCKKLRRFAFYLR------QGGLTDL---------GLSYIGQYSPN----- 464

Query: 565 IFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 623
             ++++ L     + E     +  C NL+ L +          +     L +LR+L ++G
Sbjct: 465 --VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.4 bits (167), Expect = 7e-12
 Identities = 78/587 (13%), Positives = 177/587 (30%), Gaps = 90/587 (15%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
           + +++S       +A C          R   L+ L L+G                  +  
Sbjct: 44  WFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPW 103

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSR-GYRGLRKLKSLDLSGVGIRDG 200
           ++             ++L  L+ +      + ++++ R        L++L L        
Sbjct: 104 VTEIS----------NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTT 153

Query: 201 NKLLQSMGSFPSLNTLHLESNNFTATLTTTQELH----NFTNLEYLTLDDSS---LHISL 253
           + LL  +     + TL +E ++F+      + LH    + T+LE L    +    +    
Sbjct: 154 DGLLSIVTHCRKIKTLLMEESSFSE--KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211

Query: 254 LQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF-KSLEHLDMRFARIALNTSFLQIIGES 312
           L++I     SL ++ +   E   +L   GF     +LE                 +  + 
Sbjct: 212 LETIARNCRSLVSVKVGDFE---ILELVGFFKAAANLEEFCG-----------GSLNEDI 257

Query: 313 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILD 372
               KY++L          ++   GL         Y+  N++    P+       +R LD
Sbjct: 258 GMPEKYMNLV------FPRKLCRLGLS--------YMGPNEMPILFPFA----AQIRKLD 299

Query: 373 VSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNH-SKLKIFD-AKNNEING 430
           + +  L      + +    ++E L   N        LE L  +  +LK     +  +  G
Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 431 EINESHSLTPK---------FQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG 481
             +E   ++ +          +L+ +++  +   + +      +   L +  L  +    
Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417

Query: 482 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN--NFQGHIPVEIGDI 539
              +  L+N                  R  +   K+LR                  IG  
Sbjct: 418 RITDLPLDNG----------------VRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 540 LPSLVYFNISMNAL-DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 598
            P++ +  +      D  +         LQ L++     +            +L +L + 
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521

Query: 599 NNSLK---GHIFSRIFSLRNLRWLLLEGNHFVGE--IPQSLSKCSSL 640
                     +        N+  +       V +    + +   + +
Sbjct: 522 GYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHI 568

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 79/584 (13%), Positives = 159/584 (27%), Gaps = 128/584 (21%)

Query: 233 LHNFTNLEYLTL--------------DDSSLHISLLQSIGSIFPSLKNLSMSGCEV-NGV 277
              F NL  L L              +        +  I +    LK++      V +  
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLD 128

Query: 278 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQG 337
           L          LE L +        T  L  I      +K L +  S+      + L + 
Sbjct: 129 LDRLAKARADDLETLKLDKCS-GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187

Query: 338 LCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
                 L+ L     +        L     N  SL  + V   ++   +         ++
Sbjct: 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG--FFKAAANL 245

Query: 394 EELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNY 453
           EE    + +  I +  + +                        +L    +L  L LS   
Sbjct: 246 EEFCGGSLNEDIGMPEKYM------------------------NLVFPRKLCRLGLSYMG 281

Query: 454 GDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND-SLAGPFRLPI 512
            + +  P       ++++ +L +  +  E    L++    LE L   N     G   L  
Sbjct: 282 PNEM--PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL-A 338

Query: 513 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 572
              K+L+ L +     +  +  E G +          + AL             L+++ +
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVS------QRGLIALAQGCQE-------LEYMAV 385

Query: 573 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQ 632
             + +T E  + +     NL    L     +  I              L  ++ V  +  
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERI------------TDLPLDNGVRSL-- 431

Query: 633 SLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 692
            L  C  L+                L +  GL +I                   +++ + 
Sbjct: 432 -LIGCKKLRRFAFYLR------QGGLTD-LGLSYIGQ--------------YSPNVRWML 469

Query: 693 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-NGSIP 751
           +     S           +     S+              C +L  L++        +I 
Sbjct: 470 LGYVGESDE--------GLM--EFSRG-------------CPNLQKLEMRGCCFSERAIA 506

Query: 752 DWIDGLSQLSHLNLAHNNL----EGEVPIQLCRLNQLQLLDLSD 791
             +  L  L +L +         +  + +     N ++L+    
Sbjct: 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN-IELIPSRR 549

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 3e-08
 Identities = 50/428 (11%), Positives = 123/428 (28%), Gaps = 49/428 (11%)

Query: 535 EIGDILPSLVYFNIS-MNALDGSIPS-SFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVN 591
           EI + L  L   +   M   D  +   +      L+ L L   +  T +    +   C  
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 592 LEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHFVGEIPQSL----SKCSSLKGL 643
           ++ L +  +S        +  L     +L  L      F    P+ L      C SL  +
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 644 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC------RLDSLQILDISDNN 697
            + +  +  ++  +      L+       + +  +P ++       +L  L +  +  N 
Sbjct: 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 698 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGL 757
           +    P       I+++ L   +L  +        C +L  L+      +  +       
Sbjct: 285 MPILFPFAA---QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 758 SQLSHLNLAHNNLEGEVPIQLCRLN------------QLQLLDLSDNN-----LHGLIPS 800
            QL  L +     E  +  +   ++            +L+ + +  ++     L  +   
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTY 401

Query: 801 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK-KILEIFEFTTK--NIAYAYQGRV 857
             +         +             +       +K +    +       ++  +Y G+ 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 858 LSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESL 912
              +  + L         +            +Q L +     +   I    + L  +  L
Sbjct: 462 SPNVRWMLLGYVGESDEGLMEF---SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYL 518

Query: 913 DLSYNKLS 920
            +   + S
Sbjct: 519 WVQGYRAS 526

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 47/173 (27%), Positives = 80/173 (46%), Gaps = 8/173 (4%)

Query: 638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDN 696
           +  K L L +N LS    +    L  L+ + +  N L+  +P   F  L +L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDN 95

Query: 697 NISGSLPSCF--YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 754
            +  +LP       +++ ++ L +N L   L    F + + L  L L YN L  S+P  +
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGV 152

Query: 755 -DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
            D L+ L  L L +N L+        +L +L+ L L +N L  +    FD+  
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 36/196 (18%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTS 139
            + LDL  N ++            RL+KL+ L L  N      L ++       L +L +
Sbjct: 39  TKKLDLQSNKLSSLPSKA----FHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLET 89

Query: 140 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 199
           L ++ N LQ ++    FD L NL EL ++ N++ ++   R +  L KL  L L       
Sbjct: 90  LWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLG------ 141

Query: 200 GNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLL 254
            N+ LQS+  G F    SL  L L +N               T L+ L LD++      L
Sbjct: 142 YNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA--FDKLTELKTLKLDNNQ-----L 193

Query: 255 QSI-GSIFPSLKNLSM 269
           + +    F SL+ L M
Sbjct: 194 KRVPEGAFDSLEKLKM 209

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 49/221 (22%)

Query: 557 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 615
           IP+        + LDL +NKL+  +P         L  L L++N L+  + + IF  L+N
Sbjct: 35  IPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 616 LRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
           L  L +  N       Q+L      +  +L  L L+ N L   +P  +            
Sbjct: 87  LETLWVTDNKL-----QALPIGVFDQLVNLAELRLDRNQLK-SLPPRV------------ 128

Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEG 728
                      F  L  L  L +  N +  SLP   F  L S+K++ L  N L  ++ EG
Sbjct: 129 -----------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEG 175

Query: 729 TFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 768
            F   + L TL L  N L   +P+   D L +L  L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 28/182 (15%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           L +  F    +L  L L+ N +              L  L+ L +  N      L ++  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGI----FKELKNLETLWVTDNK-----LQALPI 102

Query: 132 ---ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
               +L +L  L L  N L+ S+  + FDSL+ L  L +  NE+ ++     +  L  LK
Sbjct: 103 GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLP-KGVFDKLTSLK 160

Query: 189 SLDLSGVGIRDGNKLLQ-SMGSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 244
            L L        N+L +   G+F     L TL L++N             +   L+ L L
Sbjct: 161 ELRL------YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQL 212

Query: 245 DD 246
            +
Sbjct: 213 QE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 22/192 (11%)

Query: 539 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFL 595
           I       ++  N L      +F  +  L+ L L++NKL      I   L     NLE L
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL----KNLETL 90

Query: 596 SLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNN 649
            +++N L+  +   +F  L NL  L L+ N       +SL        + L  L L  N 
Sbjct: 91  WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-----KSLPPRVFDSLTKLTYLSLGYNE 144

Query: 650 LSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP 708
           L   +P+ +   L  L+ + +  N L+      F +L  L+ L + +N +       F  
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 709 L-SIKQVHLSKN 719
           L  +K + L +N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 53/238 (22%), Positives = 79/238 (33%), Gaps = 61/238 (25%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P   K++ L  N L   L    F   + L  L L+ N L  ++P  I   L  L  L + 
Sbjct: 36  PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93

Query: 767 HNNLEGEVPIQL-CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSF 825
            N L+  +PI +  +L  L  L L  N L  L P  FD+                     
Sbjct: 94  DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS--------------------- 131

Query: 826 SISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTR 884
                                           L+ L  L L  N+L   +P  +   LT 
Sbjct: 132 --------------------------------LTKLTYLSLGYNELQ-SLPKGVFDKLTS 158

Query: 885 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 942
           ++ L L +N L       F  L  +++L L  N+L  ++P    D       +    N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 56/243 (23%), Positives = 87/243 (35%), Gaps = 67/243 (27%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDN 792
           +    LDL  N L+         L++L  L L  N L+  +P  +   L  L+ L ++DN
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDN 95

Query: 793 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 852
            L  L    FD                                                 
Sbjct: 96  KLQALPIGVFDQ------------------------------------------------ 107

Query: 853 YQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIE 910
                L  LA L L  N+L   +PP++  +LT++  L+L +N L  ++P   F  L  ++
Sbjct: 108 -----LVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160

Query: 911 SLDLSYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSY---DGNP 966
            L L  N+L  ++P    D L  L    +  N L  ++PE    F +  K        NP
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGA--FDSLEKLKMLQLQENP 216

Query: 967 FLC 969
           + C
Sbjct: 217 WDC 219

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 66/240 (27%)

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425
              + LD+  N+L+ S+ S     LT +  L L++N  +   +L          IF    
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ---TLPA-------GIFK--- 82

Query: 426 NEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPN 485
                       L     L++L ++ N                        ++ +   P 
Sbjct: 83  -----------ELK---NLETLWVTDN-----------------------KLQAL---PI 102

Query: 486 WLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP 541
            + +    L  L L  + L       F     S  +L +L +  N  Q  +P  + D L 
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVF----DSLTKLTYLSLGYNELQ-SLPKGVFDKLT 157

Query: 542 SLVYFNISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 600
           SL    +  N L   +P   F  +  L+ L L NN+L   +P+        L+ L L  N
Sbjct: 158 SLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 73/247 (29%)

Query: 135 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
           +    L L  N L  S+ +K F  L+ L  L +NDN++  +     ++ L+ L++L ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAG-IFKELKNLETLWVT- 93

Query: 195 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSL 249
                 +  LQ++  G F    +L  L L+ N   +         + T L YL+L  + L
Sbjct: 94  ------DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNEL 145

Query: 250 HISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII 309
                QS+    P             GV        F  L                    
Sbjct: 146 -----QSL----P------------KGV--------FDKL-------------------- 156

Query: 310 GESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLR 369
                SLK L L  + L        D+    L  L+ L +DNN L+        +   L+
Sbjct: 157 ----TSLKELRLYNNQLKRVPEGAFDK----LTELKTLKLDNNQLKRVPEGAFDSLEKLK 208

Query: 370 ILDVSFN 376
           +L +  N
Sbjct: 209 MLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 50/236 (21%), Positives = 80/236 (33%), Gaps = 81/236 (34%)

Query: 341 LAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399
           L  L+ LY+++N L+ +LP        +L  L V+ N+L  ++       L ++ ELRL 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 400 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
            N  +   SL P       ++FD              SLT   +L  LSL  N       
Sbjct: 118 RNQLK---SLPP-------RVFD--------------SLT---KLTYLSLGYN------- 143

Query: 460 PKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLR 519
                            ++ +   P  + +  T L+ L L                    
Sbjct: 144 ----------------ELQSL---PKGVFDKLTSLKELRL-------------------- 164

Query: 520 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
                NN  +  +P    D L  L    +  N L      +F ++  L+ L L  N
Sbjct: 165 ----YNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 2e-12
 Identities = 50/335 (14%), Positives = 96/335 (28%), Gaps = 17/335 (5%)

Query: 612 SLRN-LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
           S     RWLL             +S+  +   +  +     G     L  +     + + 
Sbjct: 227 SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVE 286

Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 730
               +G        L  L    ++D           +  S  Q          +      
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQ-HTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 731 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 790
                L   +LS       +   ++   +L  L   +      + + +  L+ L     +
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET 404

Query: 791 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 850
                 L           +   +    +               +  K L +      ++ 
Sbjct: 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC----HLE 460

Query: 851 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 910
                  L L+  LDLS N+L   +PP +  L  ++ L  S N L   +    +NL  ++
Sbjct: 461 Q------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 911 SLDLSYNKLSG-KIPRQLVDLNTLAIFIVAYNNLS 944
            L L  N+L      + LV    L +  +  N+L 
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 3e-12
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 10/114 (8%)

Query: 81  PFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSL 140
            +  +  L L+  ++        L  L +L  +  LDL  N    ++  ++A L  L  L
Sbjct: 439 EYADVRVLHLAHKDL------TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 141 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
             S N L+ ++D     +L  L+EL + +N +      +      +L  L+L G
Sbjct: 492 QASDNALE-NVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 43/240 (17%), Positives = 84/240 (35%), Gaps = 21/240 (8%)

Query: 210 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSM 269
             +   L     +   +     EL +   L+ L  ++    ++++         ++ L  
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL-------MRALDP 397

Query: 270 SGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTN 329
              E   +       +F +L+ +D    R A               LK        L   
Sbjct: 398 LLYEKETLQ------YFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 330 SSRILD-QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLV 388
              +     L  L  +  L + +N LR +LP  LA    L +L  S N L    +   + 
Sbjct: 450 HKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE---NVDGVA 505

Query: 389 HLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF-QLKSL 447
           +L  ++EL L NN  +   +++PL +  +L + + + N +  E      L      + S+
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.5 bits (151), Expect = 5e-10
 Identities = 55/335 (16%), Positives = 92/335 (27%), Gaps = 28/335 (8%)

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSS 130
            W L  +          +      ++ C            + L  +D             
Sbjct: 233 RWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDG 292

Query: 131 VARLSSLTSLHLSHNILQGSIDAKEFDSL--SNLEELDINDNEIDNVEVSRGYRGLRKLK 188
             R S +    L    L   +    F  +   +  + +    +       R      +L 
Sbjct: 293 RNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLF 352

Query: 189 SLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS 248
             +LS          L+S           LE  N    LT    +     L Y       
Sbjct: 353 RCELSVEKSTVLQSELESCKEL-----QELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 249 LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQI 308
                         +LK +          L  +       L+        + L    L +
Sbjct: 408 FS------------TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 309 IG--ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTT 366
           +   E +  + +L LS      N  R L   L  L  L+ L   +N L  ++   +AN  
Sbjct: 456 LCHLEQLLLVTHLDLSH-----NRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLP 508

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNN 401
            L+ L +  N+L  S +  PLV    +  L L  N
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 1e-09
 Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 34/310 (10%)

Query: 340 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 399
            +     +  +   L       L   + +  L +  ++   S+             + L 
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302

Query: 400 NNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF----QLKSLSLSSNYGD 455
           +          P      +        E     +             QL    LS     
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK-- 360

Query: 456 SVTFPKFLYHQHELKEAE-------------LSHIKMIGEFPNWL--LENNTKLEFLYLV 500
           S      L    EL+E E             +  +  +      L        ++ +   
Sbjct: 361 STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420

Query: 501 NDSLA-----GPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 555
                         +    +  +R L +++ +      +   + L  + + ++S N L  
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSHNRLR- 476

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH-IFSRIFSLR 614
           ++P +   +  L+ L  S+N L   +   +A     L+ L L NN L+       + S  
Sbjct: 477 ALPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 615 NLRWLLLEGN 624
            L  L L+GN
Sbjct: 534 RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 3e-09
 Identities = 28/112 (25%), Positives = 41/112 (36%), Gaps = 9/112 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
              +  LDLS N +           L+ L  L+ L    N   N  +  VA L  L  L 
Sbjct: 462 LLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQASDNALEN--VDGVANLPRLQELL 514

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY--RGLRKLKSLD 191
           L +N LQ S   +   S   L  L++  N +   E  +      L  + S+ 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 49/289 (16%), Positives = 87/289 (30%), Gaps = 48/289 (16%)

Query: 318 YLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ 377
              L  ++L     +   + +   +  Q+  +   D         A    L   ++S  +
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEK 360

Query: 378 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 437
            T  +  S L     ++EL   N        L  +    +         E     +   +
Sbjct: 361 ST--VLQSELESCKELQELEPENKWC-----LLTIILLMRALDPLLYEKETLQYFSTLKA 413

Query: 438 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHE---LKEAELSHIKMIGEFPNWLLENNTKL 494
           + P        L S +    +  K  Y       L   +L+ +  + +            
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL--------- 464

Query: 495 EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALD 554
                                  +  LD+S+N  +  +P  +   L  L     S NAL+
Sbjct: 465 -----------------------VTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNALE 499

Query: 555 GSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSL 602
            ++     N+  LQ L L NN+L        L   C  L  L+L  NSL
Sbjct: 500 -NVDG-VANLPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.3 bits (109), Expect = 4e-05
 Identities = 48/338 (14%), Positives = 94/338 (27%), Gaps = 28/338 (8%)

Query: 222 NFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQ 281
            +   L    E H+     +++ +++ L +   + +         L M       V    
Sbjct: 230 FYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRT 289

Query: 282 GFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL 341
                +            +LN    Q     + +    S     L  +      +     
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSD-SQKECVLLKDRPECWCRDSATD 348

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELR---L 398
             L    +                T L+    S  +L      +    LT I  +R    
Sbjct: 349 EQLFRCELSVEKS-----------TVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397

Query: 399 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 458
                        L     ++     +      +  S        ++ L L+      +T
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK---DLT 454

Query: 459 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN---DSLAGPFRLPIHSH 515
               L     +   +LSH + +   P  L      LE L   +   +++ G     + + 
Sbjct: 455 VLCHLEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVDG-----VANL 507

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
            RL+ L + NN  Q    ++     P LV  N+  N+L
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 5e-12
 Identities = 55/305 (18%), Positives = 111/305 (36%), Gaps = 41/305 (13%)

Query: 135 SSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRK--- 186
             +TSL LS N L  SI   E      ++ +++  L+++ N +         + L     
Sbjct: 22  HGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 187 -LKSLDLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTATLTTTQEL-----HNFT 237
            + SL+LSG  +    +  L    +    ++  L L  N+F++   ++ E      +   
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK--SSSEFKQAFSNLPA 138

Query: 238 NLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEV--NGVLS-GQGFPHF-KSL 289
           ++  L L  + L       L+Q + +I  ++ +L++ G  +         +       S+
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 290 EHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQEL 347
             LD+    + L        I       +  L+L  + L   S   L      L HLQ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 348 YIDNNDLRGSLPWC-------LANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEEL 396
           Y+D + ++               N   + ++D +  ++  S    IS+         +  
Sbjct: 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVP 318

Query: 397 RLSNN 401
            L N 
Sbjct: 319 SLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 49/276 (17%)

Query: 567 LQFLDLSNNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL-----RNLR 617
           +  LDLS N L       +    A    ++  L+LS NSL       +  +      N+ 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 618 WLLLEGNHF----VGEIPQSLSKC-SSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHI 667
            L L GN        E+ ++L+    ++  L L  N+ S K               +  +
Sbjct: 84  SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143

Query: 668 VMPKNHLEGPIPVEFCRL-----DSLQILDISDNNI--------SGSLPSCFYPLSIKQV 714
            +  N L      E  ++      ++  L++  NN+        +  L S   P S+  +
Sbjct: 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI--PASVTSL 201

Query: 715 HLSKNMLHGQ----LKEGTFFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLA 766
            LS N+L  +    L        + +V+L+L  N L+G     +    D L  L  + L 
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 767 HNNLEGEVPIQ-------LCRLNQLQLLDLSDNNLH 795
           ++ ++     Q          + ++ L+D +   +H
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 57/309 (18%), Positives = 102/309 (33%), Gaps = 51/309 (16%)

Query: 73  YLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRL-----SKLKKLDLRGNLCNNSI 127
            L   L      + SL+LS N +      +  + L +        +  LDL  N  ++  
Sbjct: 70  ELVQILAAIPANVTSLNLSGNFL----SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125

Query: 128 LSSVARL-----SSLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEV 177
            S   +      +S+TSL+L  N L G   + E         +N+  L++  N + +   
Sbjct: 126 SSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNNLASKNC 184

Query: 178 SRGYRGLR----KLKSLDLSGVGIRD--GNKLLQSMGSFP-SLNTLHLESNNFTATLTTT 230
           +   + L      + SLDLS   +      +L     S P  + +L+L  N         
Sbjct: 185 AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244

Query: 231 --QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKS 288
                 +  +L+ + LD                  +KN+S   C+      G  FP+ + 
Sbjct: 245 LKLLKDSLKHLQTVYLDYD---------------IVKNMSKEQCK----ALGAAFPNIQK 285

Query: 289 LEHLDMRFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPL-AHLQ 345
           +  +D     I  + +     +I E        SL    L        +     +   L+
Sbjct: 286 IILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELR 345

Query: 346 ELYIDNNDL 354
           E       L
Sbjct: 346 ESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 52/381 (13%), Positives = 108/381 (28%), Gaps = 86/381 (22%)

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLA-----N 364
                +  L LS + L + S+  L Q      A +  L +  N L       L       
Sbjct: 19  SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI 78

Query: 365 TTSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF-----NH 415
             ++  L++S N L+      +  +      +I  L L  N F    S            
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-SKSSSEFKQAFSNLP 137

Query: 416 SKLKIFDAKNNEINGE----INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 471
           + +   + + N++  +    + +  +  P   + SL+L  N                L  
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPA-NVNSLNLRGN---------------NLAS 181

Query: 472 AELSHIKMIGEFPNWLLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRFLDV 523
              + +         L      +  L L            LA  F         +  L++
Sbjct: 182 KNCAELAKF------LASIPASVTSLDLSANLLGLKSYAELAYIFS---SIPNHVVSLNL 232

Query: 524 SNNNFQGHIPVEIGDIL---PSLVYFNISMNALDG-------SIPSSFGNVIFLQFLDLS 573
             N   G     +  +      L    +  + +         ++ ++F N+  +  +D +
Sbjct: 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292

Query: 574 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
             ++       I + +       +  SL N  L       IF+ ++              
Sbjct: 293 GKEIHPSHSIPISNLIRELSGKADVPSLLNQCL-------IFAQKH------------QT 333

Query: 630 IPQSLSKCSSLKGLYLNNNNL 650
             + L+    L+        L
Sbjct: 334 NIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 54/329 (16%), Positives = 110/329 (33%), Gaps = 91/329 (27%)

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
            S    +  L L+ NNL       L   +   +                    S+  L++
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELI--QAFANTPA-----------------SVTSLNL 58

Query: 694 SDNNISGS--------LPSCFYPLSIKQVHLSKNMLHGQ----LKEGTFFNCSSLVTLDL 741
           S N++           L +   P ++  ++LS N L  +    L +       ++  LDL
Sbjct: 59  SGNSLGFKNSDELVQILAAI--PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 742 SYNYL-NGSIPDWIDGL----SQLSHLNLAHNNLEGEVPIQLCRL-----NQLQLLDLSD 791
            +N   + S  ++        + ++ LNL  N+L  +   +L ++       +  L+L  
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 792 NNL---------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 842
           NNL           L       T+L  S N              + G +     ++  IF
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANL-------------L-GLKSY--AELAYIF 220

Query: 843 EFTTKNIAYAYQGRVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGT 898
                +            +  L+L  N L    + ++     +L  +QT+ L ++ +   
Sbjct: 221 SSIPNH------------VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNM 268

Query: 899 -------IPLTFSNLRHIESLDLSYNKLS 920
                  +   F N++ I  +D +  ++ 
Sbjct: 269 SKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 64/302 (21%)

Query: 487 LLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 538
                  +  L L            L   F    ++   +  L++S N+       E+  
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFA---NTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 539 ILPS----LVYFNISMNALDGSIPSSFGNVIF-----LQFLDLSNNKLTGE----IPDHL 585
           IL +    +   N+S N L           +      +  LDL  N  + +         
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 586 AMCCVNLEFLSLSNNSLK---GHIFSRIFSLRN--LRWLLLEGNHF----VGEIPQSL-S 635
           +    ++  L+L  N L         +I +     +  L L GN+       E+ + L S
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
             +S+  L L+ N L  K    L        I                  + +  L++  
Sbjct: 194 IPASVTSLDLSANLLGLKSYAELA--YIFSSI-----------------PNHVVSLNLCL 234

Query: 696 NNISGS----LPSCFYPL-SIKQVHLSKNMLHGQLKEG------TFFNCSSLVTLDLSYN 744
           N + G     L      L  ++ V+L  +++    KE        F N   ++ +D +  
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 745 YL 746
            +
Sbjct: 295 EI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 44/326 (13%), Positives = 87/326 (26%), Gaps = 82/326 (25%)

Query: 362 LANTTSLRILDVSFNQLTGS----ISSSPLVHLTSIEELRLSNNHFRIPVSLEPLF---- 413
            +    +  LD+S N L       +  +      S+  L LS N      + + L     
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILA 76

Query: 414 -NHSKLKIFDAKNNEINGEINE---SHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHE 468
              + +   +   N ++ + ++          F +  L L  N                 
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS------------- 123

Query: 469 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN--------DSLAGPFRLPIHSHKRLRF 520
                        +           +  L L          D L             +  
Sbjct: 124 ------KSSSEFKQA---FSNLPASITSLNLRGNDLGIKSSDELIQILA---AIPANVNS 171

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           L++  NN       E+   L               SIP+S      +  LDLS N L  +
Sbjct: 172 LNLRGNNLASKNCAELAKFLA--------------SIPAS------VTSLDLSANLLGLK 211

Query: 581 ----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL----RNLRWLLLEGNHF------ 626
               +    +    ++  L+L  N L G     +  L    ++L+ + L+ +        
Sbjct: 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKE 271

Query: 627 -VGEIPQSLSKCSSLKGLYLNNNNLS 651
               +  +      +  +  N   + 
Sbjct: 272 QCKALGAAFPNIQKIILVDKNGKEIH 297

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 60/306 (19%), Positives = 106/306 (34%), Gaps = 33/306 (10%)

Query: 110 LSKLKKLDLRGNLCNNSILSSV----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL 165
            S L   +L         +S V     RL+S  SL  + ++   ++       L +   +
Sbjct: 21  FSCLCLPEL-------LKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVI 73

Query: 166 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTA 225
                     +    +    +++ +DLS   I     L   +     L  L LE    + 
Sbjct: 74  AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST-LHGILSQCSKLQNLSLEGLRLSD 132

Query: 226 TLTTTQELHNFTNLEYLTLDD-SSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 284
                  L   +NL  L L   S      LQ++ S    L  L++S C      + +   
Sbjct: 133 P--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD---FTEKHVQ 187

Query: 285 HF-----KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 339
                  +++  L++   R  L  S L  +    P+L +L LS S +  N          
Sbjct: 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE---FF 244

Query: 340 PLAHLQELYIDN-NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHL-TSIEELR 397
            L +LQ L +    D+       L    +L+ L V      G +    L  L  ++  L+
Sbjct: 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF-----GIVPDGTLQLLKEALPHLQ 299

Query: 398 LSNNHF 403
           ++ +HF
Sbjct: 300 INCSHF 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 37/247 (14%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLERL-SRLSKLKKLDLRGNLCNNSILSSVARLS 135
           +      +++ +DLS + I    E   L  + S+ SKL+ L L G   ++ I++++A+ S
Sbjct: 87  AEHFSPFRVQHMDLSNSVI----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 136 SLTSLHLSH--NILQGSIDAKEFDSLSNLEELDIND-NEIDNVEVSRG-YRGLRKLKSLD 191
           +L  L+LS      + ++      S S L+EL+++   +     V          +  L+
Sbjct: 143 NLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201

Query: 192 LSGVGIRDGNKLLQSMGSF-PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTL------ 244
           LSG         L ++    P+L  L L S++        QE      L++L+L      
Sbjct: 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDL-SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

Query: 245 -DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNT 303
             ++ L +  +       P+LK L + G   +G           +L+ L      + +N 
Sbjct: 261 IPETLLELGEI-------PTLKTLQVFGIVPDG-----------TLQLLKEALPHLQINC 302

Query: 304 SFLQIIG 310
           S    I 
Sbjct: 303 SHFTTIA 309

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 58/304 (19%), Positives = 101/304 (33%), Gaps = 57/304 (18%)

Query: 508 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 567
           +          + LD++  N    +   +  +   ++ F    + +D  +   F     +
Sbjct: 39  WYRLASDESLWQTLDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPF-RV 95

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV 627
           Q +DLSN+ +       +   C  L+ LSL    L   I + +    NL  L L G    
Sbjct: 96  QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 628 GE--IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 684
            E  +   LS CS L  L L+   + +          K +Q  V                
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE---------KHVQVAV-----------AHVSE 195

Query: 685 LDSLQILDISDNNISGSLPSCFYPLSIKQV-HLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
             ++  L++S              L    +  L +              C +LV LDLS 
Sbjct: 196 --TITQLNLSG---------YRKNLQKSDLSTLVR-------------RCPNLVHLDLSD 231

Query: 744 -NYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDL----SDNNLHGL 797
              L          L+ L HL+L+   ++  E  ++L  +  L+ L +     D  L  L
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

Query: 798 IPSC 801
             + 
Sbjct: 292 KEAL 295

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 486 WLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN-NNFQGHIPVEIGDILPSLV 544
            +L   +KL+ L L    L+ P    +  +  L  L++S  + F       +      L 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 545 YFNIS------MNALDGSIPSSFGNVIFLQFLDLS--NNKLTGEIPDHLAMCCVNLEFLS 596
             N+S         +  ++         +  L+LS     L       L   C NL  L 
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSET---ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228

Query: 597 LSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNN 647
           LS+   LK   F   F L  L+ L L   + +       L +  +LK L +  
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 25/147 (17%)

Query: 86  ESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILS----SVARLSSLTSLH 141
             L L+ N           ++L +L K+       N  NN I      +    S +  + 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI-------NFSNNKITDIEEGAFEGASGVNEIL 87

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 201
           L+ N L+ ++  K F  L +L+ L +  N I  V  +  + GL  ++ L L        N
Sbjct: 88  LTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSL------YDN 139

Query: 202 KLLQSM--GSF---PSLNTLHLESNNF 223
           + + ++  G+F    SL+TL+L +N F
Sbjct: 140 Q-ITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 22/126 (17%)

Query: 77  SLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSV--- 131
            +F    QL  ++ S N I        +E       S + ++ L  N      L +V   
Sbjct: 51  GIFKKLPQLRKINFSNNKI------TDIEEGAFEGASGVNEILLTSNR-----LENVQHK 99

Query: 132 --ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLK 188
               L SL +L L  N +   +    F  LS++  L + DN+I    V+ G +  L  L 
Sbjct: 100 MFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLS 156

Query: 189 SLDLSG 194
           +L+L  
Sbjct: 157 TLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 18/146 (12%)

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKN 719
           + L  I  P++     IP           L +++N  +    +  F  L  +++++ S N
Sbjct: 21  QKLNKI--PEH-----IPQ------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN 67

Query: 720 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL 778
            +   ++EG F   S +  + L+ N L  ++   +  GL  L  L L  N +        
Sbjct: 68  KIT-DIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSF 125

Query: 779 CRLNQLQLLDLSDNNLHGLIPSCFDN 804
             L+ ++LL L DN +  + P  FD 
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 6/114 (5%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P    ++ L+ N        G F     L  ++ S N +   I +   +G S ++ + L 
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 816
            N LE         L  L+ L L  N +  +    F        L    N  ++
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT 143

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 2/130 (1%)

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 626
             L L+NN+ T      +      L  ++ SNN +   I    F     +  +LL  N  
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLD 686
                +      SLK L L +N ++         L  ++ + +  N +    P  F  L 
Sbjct: 94  ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153

Query: 687 SLQILDISDN 696
           SL  L++  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           L ++NN F       I   LP L   N S N +      +F     +  + L++N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 581 IP----DHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 633
           +       L     +L+ L L +N    +    F     L ++R L L  N      P +
Sbjct: 96  VQHKMFKGL----ESLKTLMLRSNRITCVGNDSFIG---LSSVRLLSLYDNQITTVAPGA 148

Query: 634 LSKCSSLKGLYLNNN 648
                SL  L L  N
Sbjct: 149 FDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 7/130 (5%)

Query: 643 LYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 701
           L LNNN  +          L  L+ I    N +       F     +  + ++ N +  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 702 LPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLS 758
           +    F  L S+K + L  N +   +   +F   SS+  L L  N +  ++     D L 
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLH 153

Query: 759 QLSHLNLAHN 768
            LS LNL  N
Sbjct: 154 SLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 8/152 (5%)

Query: 571 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LRNLRWLLLEGNHFVGE 629
           D SN KL  +IP+H+         L L+NN       + IF  L  LR +    N     
Sbjct: 17  DCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSL 688
              +    S +  + L +N L     +    L+ L+ +++  N +   +  + F  L S+
Sbjct: 73  EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSV 131

Query: 689 QILDISDNNISGSLPSCFYPL-SIKQVHLSKN 719
           ++L + DN I+   P  F  L S+  ++L  N
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 19/104 (18%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSV 131
           +    F     +  + L+ N +      E ++      L  LK L LR N      ++ V
Sbjct: 72  IEEGAFEGASGVNEILLTSNRL------ENVQHKMFKGLESLKTLMLRSNR-----ITCV 120

Query: 132 -----ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
                  LSS+  L L  N +  ++    FD+L +L  L++  N
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 23/155 (14%)

Query: 123 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C+N  L+ +   +      L L++N          F  L  L +++ ++N+I ++E    
Sbjct: 18  CSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-A 76

Query: 181 YRGLRKLKSLDLSGVGIRDGNKL--LQSMGSF---PSLNTLHLESNNFTATLTTTQELHN 235
           + G   +  + L+       N+L  +Q    F    SL TL L SN  T     +     
Sbjct: 77  FEGASGVNEILLT------SNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDS--FIG 127

Query: 236 FTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLSM 269
            +++  L     SL+ + + ++    F +L +LS 
Sbjct: 128 LSSVRLL-----SLYDNQITTVAPGAFDTLHSLST 157

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 7/84 (8%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 916
            S +  + L+ N+L   +  ++   L  ++TL L  N +T     +F  L  +  L L  
Sbjct: 80  ASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 917 NKLSGKIPR----QLVDLNTLAIF 936
           N+++  +       L  L+TL + 
Sbjct: 139 NQIT-TVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 8/76 (10%)

Query: 864 LDLSCNKLVGHIPPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
           L L+ N+    +        L +++ +N S+N +T      F     +  + L+ N+L  
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 922 KIP----RQLVDLNTL 933
            +     + L  L TL
Sbjct: 96  -VQHKMFKGLESLKTL 110

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 32/150 (21%)

Query: 86  ESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSVA-----RLSSLT 138
             + L  N I        +     S   KL+++DL  N      +S +A      L SL 
Sbjct: 35  TEIRLEQNTIKV------IPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLN 83

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSGVGI 197
           SL L  N +   +    F+ L +L+ L +N N+I+ +      ++ L  L  L L     
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLR--VDAFQDLHNLNLLSLYD--- 137

Query: 198 RDGNKLLQ-SMGSF---PSLNTLHLESNNF 223
              NKL   + G+F    ++ T+HL  N F
Sbjct: 138 ---NKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 59.7 bits (145), Expect = 6e-10
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 7/114 (6%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P +I ++ L +N +   +  G F     L  +DLS N ++  +      GL  L+ L L 
Sbjct: 31  PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNSS 816
            N +          L  LQLL L+ N ++ L    F +      L    N   +
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%)

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNM 720
           KGL  I  P N     +P       ++  + +  N I    P  F P   ++++ LS N 
Sbjct: 21  KGLTEI--PTN-----LPE------TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67

Query: 721 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQL- 778
           +  +L    F    SL +L L  N +   +P  + +GL  L  L L  N +   + +   
Sbjct: 68  IS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

Query: 779 CRLNQLQLLDLSDNNLHGLIPSCFDN 804
             L+ L LL L DN L  +    F  
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSP 150

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 626
             + L  N +   IP         L  + LSNN +   +    F  LR+L  L+L GN  
Sbjct: 35  TEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI 92

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRL 685
                       SL+ L LN N ++  +      +L  L  + +  N L+      F  L
Sbjct: 93  TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 686 DSLQILDISDN 696
            ++Q + ++ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-- 131
           +    F+P+++L  +DLS N I+  A +        L  L  L L GN      ++ +  
Sbjct: 47  IPPGAFSPYKKLRRIDLSNNQISELAPDA----FQGLRSLNSLVLYGNK-----ITELPK 97

Query: 132 ---ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 188
                L SL  L L+ N +   +    F  L NL  L + DN++  +     +  LR ++
Sbjct: 98  SLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQ 155

Query: 189 SLDLSG 194
           ++ L+ 
Sbjct: 156 TMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDS 687
           EIP +L    ++  + L  N +    P      K L+ I +  N +   +  + F  L S
Sbjct: 25  EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRS 81

Query: 688 LQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 745
           L  L +  N I+  LP   F  L S++ + L+ N ++  L+   F +  +L  L L  N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 746 LNGSIPDWIDGLSQLSHLNLAHN 768
           L          L  +  ++LA N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 35/187 (18%), Positives = 58/187 (31%), Gaps = 59/187 (31%)

Query: 734 SSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSD 791
            ++  + L  N +   IP        +L  ++L++N +  E+       L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N +  L  S F+                                                
Sbjct: 90  NKITELPKSLFEG----------------------------------------------- 102

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 910
                 L  L  L L+ NK+   +      +L  +  L+L  N L      TFS LR I+
Sbjct: 103 ------LFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 911 SLDLSYN 917
           ++ L+ N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRI 370
               L+ + LS + +   +          L  L  L +  N +   LP        SL++
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQG----LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQL 108

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           L ++ N++   +       L ++  L L +N  +
Sbjct: 109 LLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 14/120 (11%)

Query: 513 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSS-FGNVIFLQFLD 571
             +K+LR +D+SNN     +  +    L SL    +  N +   +P S F  +  LQ L 
Sbjct: 53  SPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110

Query: 572 LSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 626
           L+ NK+   +       L     NL  LSL +N L+  I    F  LR ++ + L  N F
Sbjct: 111 LNANKIN-CLRVDAFQDLH----NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 135 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
            ++T + L  N ++  I    F     L  +D+++N+I  +     ++GLR L SL L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLY- 88

Query: 195 VGIRDGNKLLQSM--GSF---PSLNTLHLESNNFTATLTTTQELHN--FTNLEYLTLDDS 247
                GNK +  +    F    SL  L L +N           L    F +L  L L   
Sbjct: 89  -----GNK-ITELPKSLFEGLFSLQLLLLNANKI-------NCLRVDAFQDLHNLNL--L 133

Query: 248 SLHISLLQSI-GSIFPSLKNLS 268
           SL+ + LQ+I    F  L+ + 
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPS-SFGNVIFLQFLDLSNNKLTG 579
           + +  N  +  IP         L   ++S N +   +   +F  +  L  L L  NK+T 
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 580 EIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSL 634
           E+P    + L     +L+ L L+ N +   +    F  L NL  L L  N        + 
Sbjct: 94  ELPKSLFEGL----FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 635 SKCSSLKGLYLNNN 648
           S   +++ ++L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 19/104 (18%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLER--LSRLSKLKKLDLRGNLCNNSILSSV 131
           L    F   + L SL L  N I        L +     L  L+ L L  N      ++ +
Sbjct: 71  LAPDAFQGLRSLNSLVLYGNKI------TELPKSLFEGLFSLQLLLLNANK-----INCL 119

Query: 132 AR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
                  L +L  L L  N LQ +I    F  L  ++ + +  N
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 858 LSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY 916
           L  L  L L  NK+   +P  +   L  +Q L L+ N +       F +L ++  L L  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 917 NKLS 920
           NKL 
Sbjct: 138 NKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 278 LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE----SMPSLKYLSLSGSTLGTNSSRI 333
           +    F  +K L  +D       L+ + +  +       + SL  L L G+ +      +
Sbjct: 47  IPPGAFSPYKKLRRID-------LSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99

Query: 334 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 393
            +     L  LQ L ++ N +         +  +L +L +  N+L  +I+      L +I
Sbjct: 100 FEG----LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAI 154

Query: 394 EELRLSNNHF 403
           + + L+ N F
Sbjct: 155 QTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 864 LDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLS 920
           + L  N +   IPP       +++ ++LS+N ++  +    F  LR + SL L  NK++
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 687
           +    L    +L  LY+ N      +    L  L  L+++ + K+ L    P  F     
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 688 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 722
           L  L++S N +          LS++++ LS N LH
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 10/107 (9%)

Query: 121 NLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
                  L  +    +LT L++ +      ++ ++   L  L  L I  + +  V     
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDA 75

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSF--PSLNTLHLESNNFT 224
           +    +L  L+LS       N L   S  +    SL  L L  N   
Sbjct: 76  FHFTPRLSRLNLS------FNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.1 bits (132), Expect = 5e-08
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 914
                L  L +   + + H+  + +  L  ++ L +  + L    P  F     +  L+L
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87

Query: 915 SYNKLSGKIPRQLVDLNTLAIFIVAYNNL 943
           S+N L   +  + V   +L   +++ N L
Sbjct: 88  SFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.7 bits (131), Expect = 7e-08
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 336 QGLCPLAHLQELYIDNNDLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 394
             L    +L ELYI+N      L    L     LR L +  + L   ++         + 
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLS 83

Query: 395 ELRLSNNHFRIPVSLEP-LFNHSKLKIFDAKNNEIN 429
            L LS N      SL         L+      N ++
Sbjct: 84  RLNLSFNALE---SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 875 IPPQIGNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
               +     +  L + +      + L     L  + +L +  + L    P        L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 934 AIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 969
           +   +++N L   +   T Q  +  +    GNP  C
Sbjct: 83  SRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)

Query: 734 SSLVTLDLSYNYLNGSIPDW-IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 792
            +L  L +        +    + GL +L +L +  + L    P       +L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 793 NLHGLIPSCFDNTTLHESY-NNNS 815
            L  L        +L E   + N 
Sbjct: 91  ALESLSWKTVQGLSLQELVLSGNP 114

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 3/96 (3%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS-LR 614
                      L  L + N +    +          L  L++  + L+  +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 615 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 650
            L  L L  N     +     +  SL+ L L+ N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 12/155 (7%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 371
              +L  L +       +   +  + L  L  L+ L I  + LR   P     T  L  L
Sbjct: 29  GAENLTELYIEN---QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 372 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR-------IPVSLEPLFNHSKLKIFDAK 424
           ++SFN L  S+S   +  L S++EL LS N          +    E        +     
Sbjct: 86  NLSFNALE-SLSWKTVQGL-SLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCH 143

Query: 425 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTF 459
                  +  +    P  +++  + S + GD V  
Sbjct: 144 GQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLL 178

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 7e-06
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----- 133
               + L  L +         E      L  L +L+ L +  +      L  VA      
Sbjct: 27  LPGAENLTELYIENQQHLQHLEL---RDLRGLGELRNLTIVKSG-----LRFVAPDAFHF 78

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
              L+ L+LS N L+ S+  K    LS L+EL ++ N + 
Sbjct: 79  TPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 742
           C       L  + +    SL       ++ ++++        L+         L  L + 
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64

Query: 743 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
            + L    PD      +LS LNL+ N LE  +  +  +   LQ L LS N LH
Sbjct: 65  KSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
           + L  L + N     H+ +     L  L    I  + L    P +F     L  L+LS N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 576 KLTGEIPDHLAMCCVNLEFLSLSNNSL 602
            L       +    ++L+ L LS N L
Sbjct: 91  ALESLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSD 791
                 L  + +         + G   L+ L + +      + ++ L  L +L+ L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 792 NNLHGLIPSCFDN----TTLHESYNNNSS-PDKPFK 822
           + L  + P  F      + L+ S+N   S   K  +
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
            +  + L LS NNI      E +  LS +  L+ L L  NL    I +  A   +L  L 
Sbjct: 47  LKACKHLALSTNNI------EKISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99

Query: 142 LSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
           +S+N +         + L NL  L +++N+I N         L KL+ L L+G
Sbjct: 100 ISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 27/167 (16%)

Query: 87  SLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSI--LSSVARLSSLTSLHLSH 144
            L      I           LS L   K L L      N+I  +SS++ + +L  L L  
Sbjct: 29  ELHGMIPPIEKMDAT-----LSTLKACKHLALS----TNNIEKISSLSGMENLRILSLGR 79

Query: 145 NILQGSIDAKEFDSLSN-LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 203
           N+++     +  D++++ LEEL I+ N+I ++    G   L  L+ L +S   I +  + 
Sbjct: 80  NLIK---KIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVLYMSNNKITNWGE- 132

Query: 204 LQSMGSFPSLNTLHLESNNFTATLTTTQE--------LHNFTNLEYL 242
           +  + +   L  L L  N                   +    NL+ L
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 25/171 (14%)

Query: 137 LTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVG 196
              LH     ++  +D     +L   + L ++ N I+ +       G+  L+ L L    
Sbjct: 27  KVELHGMIPPIEK-MD-ATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNL 81

Query: 197 IRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS 256
           I+    L        +L  L +  N     + +   +    NL  L +  S+  I+    
Sbjct: 82  IKKIENLDAVA---DTLEELWISYNQ----IASLSGIEKLVNLRVLYM--SNNKITNWGE 132

Query: 257 IGSI--FPSLKNLSMSGCEVNGVLSGQGFP---------HFKSLEHLDMRF 296
           I  +     L++L ++G  +                      +L+ LD   
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMP 183

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 370
            ++ + K+L+LS + +     +I    L  + +L+ L +  N ++  +    A   +L  
Sbjct: 45  STLKACKHLALSTNNI----EKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEE 97

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING 430
           L +S+NQ+    S S +  L ++  L +SNN       ++ L    KL+      N +  
Sbjct: 98  LWISYNQIA---SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 431 EINESHSLT 439
           +  E+++ +
Sbjct: 155 DYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 33/165 (20%), Positives = 58/165 (35%), Gaps = 54/165 (32%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           ++  +LS   + K L L+ NN+          +  L                    +++L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE--------KISSLSG------------------MENL 72

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           +IL +  N I            I               E       +L  L +SYN +  
Sbjct: 73  RILSLGRNLIK----------KI---------------ENLDAVADTLEELWISYNQIA- 106

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDN 792
           S+   I+ L  L  L +++N +     I  L  L++L+ L L+ N
Sbjct: 107 SLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 19/116 (16%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN-LCNNSILSSVARLSS 136
           L      LE L +S+N I        L  + +L  L+ L +  N + N   +  +A L  
Sbjct: 88  LDAVADTLEELWISYNQI------ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141

Query: 137 LTSLHLSHNILQGSIDAKEFDS---------LSNLEELD---INDNEIDNVEVSRG 180
           L  L L+ N L          S         L NL++LD   ++ +E +   V+RG
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARG 197

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 12/113 (10%)

Query: 591 NLEFLSLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNN 649
             E + L         + + + +L+  + L L  N+   +I  SLS   +L+ L L  N 
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 650 LSGKIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRLDSLQILDISDNNIS 699
           +  KI         L+ + +  N    L G       +L +L++L +S+N I+
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 17/147 (11%)

Query: 557 IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL 616
           + ++   +   + L LS N +  +I   L+    NL  LSL  N +K  I +       L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLS-GMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 617 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKNHLE 675
             L +  N         + K  +L+ LY++NN ++       L  L  L+ +++  N L 
Sbjct: 96  EELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153

Query: 676 GPIPVEFC----------RLDSLQILD 692
                             RL +L+ LD
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 285 HFKSLEHLDMRFARIALNTSFLQIIG-ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAH 343
             K+ +HL +    I       +I     M +L+ LSL       N  + ++        
Sbjct: 46  TLKACKHLALSTNNIE------KISSLSGMENLRILSLGR-----NLIKKIENLDAVADT 94

Query: 344 LQELYIDNN---DLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
           L+EL+I  N    L G     +    +LR+L +S N++T       L  L  +E+L L+ 
Sbjct: 95  LEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

Query: 401 N 401
           N
Sbjct: 150 N 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 58.5 bits (142), Expect = 5e-10
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 28/128 (21%)

Query: 88  LDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN-------------------LCNNSI- 127
           + L+   I      E   + +   + ++LDLRG                      +N I 
Sbjct: 2   VKLTAELI------EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR 55

Query: 128 -LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRK 186
            L     L  L +L +++N +   I      +L +L EL + +N +  +        L+ 
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114

Query: 187 LKSLDLSG 194
           L  L +  
Sbjct: 115 LTYLCILR 122

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 14/123 (11%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 137
           L     Q +++D S N I        L+    L +LK L +  N            L  L
Sbjct: 37  LGATLDQFDAIDFSDNEI------RKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90

Query: 138 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-----LRKLKSLDL 192
           T L L++N L    D     SL +L  L I  N + N +    YR      + +++ LD 
Sbjct: 91  TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLDF 147

Query: 193 SGV 195
             V
Sbjct: 148 QKV 150

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 5/115 (4%)

Query: 559 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 618
           + + N +  + LDL   K+   I ++L       + +  S+N ++         LR L+ 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 68

Query: 619 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 672
           LL+  N               L  L L NN+L        L +LK L ++ + +N
Sbjct: 69  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 14/149 (9%)

Query: 227 LTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHF 286
           +    +  N      L L      I +++++G+       +  S    N +    GFP  
Sbjct: 9   IEQAAQYTNAVRDRELDLR--GYKIPVIENLGATLDQFDAIDFSD---NEIRKLDGFPLL 63

Query: 287 KSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQE 346
           + L+ L +   RI       + + +++P L  L L+ ++L       LD  L  L  L  
Sbjct: 64  RRLKTLLVNNNRI---CRIGEGLDQALPDLTELILTNNSL--VELGDLDP-LASLKSLTY 117

Query: 347 LYIDNN---DLRGSLPWCLANTTSLRILD 372
           L I  N   + +    + +     +R+LD
Sbjct: 118 LCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 370
            +    + L L G         +++     L     +   +N++R  L         L+ 
Sbjct: 16  TNAVRDRELDLRG-----YKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 68

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEI 428
           L V+ N++   I       L  + EL L+NN       L+PL +   L       N +
Sbjct: 69  LLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 690 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
           ++ ++   I          +  +++ L    +   + E           +D S N +   
Sbjct: 1   MVKLTAELIE-QAAQYTNAVRDRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEIR-K 56

Query: 750 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
           +  +   L +L  L + +N +          L  L  L L++N+L  L
Sbjct: 57  LDGF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 612 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 671
           +    R L L G   +  I    +       +  ++N +  K+      L+ L+ +++  
Sbjct: 17  NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNN 73

Query: 672 NHLEGPIPVEFCRLDSLQILDISDNNIS 699
           N +          L  L  L +++N++ 
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 488 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
             N  +   L L    +     L   +  +   +D S+N  +    ++   +L  L    
Sbjct: 15  YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLL 70

Query: 548 ISMNALDGSIPSSFGNVIFLQFLDLSNNKLT--GEIPDHLAMCCVNLEFLSLSNN---SL 602
           ++ N +          +  L  L L+NN L   G++ D LA    +L +L +  N   + 
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLA-SLKSLTYLCILRNPVTNK 128

Query: 603 KGHIFSRIFSLRNLRWL 619
           K +    I+ +  +R L
Sbjct: 129 KHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 855 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 914
           G  L     +D S N++          L R++TL +++N +          L  +  L L
Sbjct: 38  GATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95

Query: 915 SYNKLS 920
           + N L 
Sbjct: 96  TNNSLV 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSI--LSSVARLSSLTS 139
              ++ L L  +      E +         +L+ L    +  N  +  ++++ +L+ L  
Sbjct: 16  PSDVKELVLDNS---RSNEGKLEGLTDEFEELEFL----STINVGLTSIANLPKLNKLKK 68

Query: 140 LHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSG 194
           L LS N +         +   NL  L+++ N+I ++      + L  LKSLDL  
Sbjct: 69  LELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 14/119 (11%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 137
           L   F++LE L      +        +  L +L+KLKKL+L  N  +  +     +  +L
Sbjct: 37  LTDEFEELEFLSTINVGL------TSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90

Query: 138 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-----LRKLKSLD 191
           T L+LS N ++     +    L NL+ LD+ + E+ N+     YR      L +L  LD
Sbjct: 91  THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN---DYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 3/104 (2%)

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           L L N++      + L      LEFLS  N  L     + +  L  L+ L L  N   G 
Sbjct: 22  LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKLNKLKKLELSDNRVSGG 79

Query: 630 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN 672
           +     KC +L  L L+ N +        L  L+ L+ + +   
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 12/141 (8%)

Query: 235 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
             ++++ L LD+S  +   L+ +   F  L+ LS       G+ S    P    L+ L++
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN---VGLTSIANLPKLNKLKKLEL 71

Query: 295 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 352
              R+   +  L+++ E  P+L +L+LSG+ +       ++  L  L +L+ L + N   
Sbjct: 72  SDNRV---SGGLEVLAEKCPNLTHLNLSGNKI--KDLSTIEP-LKKLENLKSLDLFNCEV 125

Query: 353 -DLRGSLPWCLANTTSLRILD 372
            +L             L  LD
Sbjct: 126 TNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 158 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 217
           + S+++EL ++++  +  ++        +L+ L    VG+      + ++     L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS----IANLPKLNKLKKLE 70

Query: 218 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 274
           L  N  +  L    E     NL +L L  S   I  L +I  +    +LK+L +  CEV
Sbjct: 71  LSDNRVSGGLEVLAE--KCPNLTHLNL--SGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 306 LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 365
           L++   +   +K L L  S   +N  ++          L+ L   N  L  S+   L   
Sbjct: 9   LELRNRTPSDVKELVLDNS--RSNEGKLEG-LTDEFEELEFLSTINVGLT-SIA-NLPKL 63

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKN 425
             L+ L++S N+++            ++  L LS N  +   ++EPL     LK  D  N
Sbjct: 64  NKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 426 NEI 428
            E+
Sbjct: 123 CEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 612 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
           +  +++ L+L+ +    G++     +   L+ L   N  L+  I   L  L  L+ + + 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNIS 699
            N + G + V   +  +L  L++S N I 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 285 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHL 344
               ++ L +  +R   N   L+ + +    L++LS     L    + I    L  L  L
Sbjct: 15  TPSDVKELVLDNSRS--NEGKLEGLTDEFEELEFLSTINVGL----TSI--ANLPKLNKL 66

Query: 345 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           ++L + +N + G L        +L  L++S N++    +  PL  L +++ L L N    
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--- 123

Query: 405 IPVSLEP 411
             V+   
Sbjct: 124 -EVTNLN 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 767
           P  +K++ L  +  +    EG       L  L      L  SI + +  L++L  L L+ 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSD 73

Query: 768 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
           N + G + +   +   L  L+LS N +  L
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 8/110 (7%)

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 573
             + L FL   N        +     L  L    +S N + G +         L  L+LS
Sbjct: 40  EFEELEFLSTINVGLTS---IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96

Query: 574 NNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSR---IFSLRNLRWL 619
            NK+      + L     NL+ L L N  +      R      L  L +L
Sbjct: 97  GNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 27/110 (24%)

Query: 684 RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY 743
             + L+ L   +  ++          SI  +                   + L  L+LS 
Sbjct: 40  EFEELEFLSTINVGLT----------SIANLP----------------KLNKLKKLELSD 73

Query: 744 NYLNGSIPDWIDGLSQLSHLNLAHNNLEG-EVPIQLCRLNQLQLLDLSDN 792
           N ++G +    +    L+HLNL+ N ++       L +L  L+ LDL + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 864 LDLSCNKL--VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           L      L  + ++P     L +++ L LS N ++G + +      ++  L+LS NK+ 
Sbjct: 47  LSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 732 NCSSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 790
             S +  L L  +  N G +    D   +L  L+  +  L   +   L +LN+L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72

Query: 791 DNNLHGLIPSCFDN----TTLHESYNN 813
           DN + G +    +     T L+ S N 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNK 99

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 78  LFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 137
           L   F  LE L L    +        +  L +L KLKKL+L  N     +     +L +L
Sbjct: 44  LTAEFVNLEFLSLINVGL------ISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 138 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRG-----LRKLKSLD 191
           T L+LS N L+     +    L  L+ LD+ + E+ N+     YR      L +L  LD
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 38/134 (28%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           L L N K      + L    VNLEFLSL N  L     S +  L  L+ L L  N   G 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGG 86

Query: 630 IPQSLSKCSSLKGLYLNNNNLSG-KIPRWLGNLKGLQHIVMPKN---HLEGPIPVEFCRL 685
           +     K  +L  L L+ N L        L  L+ L+ + +      +L       F  L
Sbjct: 87  LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146

Query: 686 DSLQILDISDNNIS 699
             L  LD  D    
Sbjct: 147 PQLTYLDGYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 12/141 (8%)

Query: 235 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDM 294
               +  L LD+   +   ++ + + F +L+ LS+    +  V      P    L+ L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLEL 78

Query: 295 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN-- 352
              RI      L ++ E +P+L +L+LSG+ L       L+  L  L  L+ L + N   
Sbjct: 79  SENRI---FGGLDMLAEKLPNLTHLNLSGNKL--KDISTLEP-LKKLECLKSLDLFNCEV 132

Query: 353 -DLRGSLPWCLANTTSLRILD 372
            +L             L  LD
Sbjct: 133 TNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 109 RLSKLKKLDLRGNLCNN-SILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 167
             + +++L L     N+  I    A   +L  L L +  L           L  L++L++
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLEL 78

Query: 168 NDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 221
           ++N I           L  L  L+LSG  ++D +  L+ +     L +L L + 
Sbjct: 79  SENRIFGGLDMLA-EKLPNLTHLNLSGNKLKDIST-LEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 158 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 217
           + + + EL +++ + ++ ++         L+ L L  VG+      + ++   P L  L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS----VSNLPKLPKLKKLE 77

Query: 218 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSI--FPSLKNLSMSGCEV 274
           L  N     L    E     NL +L L  S   +  + ++  +     LK+L +  CEV
Sbjct: 78  LSENRIFGGLDMLAE--KLPNLTHLNL--SGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 707 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 766
            P +++++ L     +    EG      +L  L L    L  S+ + +  L +L  L L+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELS 79

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 797
            N + G + +   +L  L  L+LS N L  +
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 309 IGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSL 368
           +     +L++LSL    L      +    L  L  L++L +  N + G L        +L
Sbjct: 44  LTAEFVNLEFLSLINVGL----ISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97

Query: 369 RILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP------LFNHSKLKIFD 422
             L++S N+L    +  PL  L  ++ L L N      V+              +L   D
Sbjct: 98  THLNLSGNKLKDISTLEPLKKLECLKSLDLFNC----EVTNLNDYRESVFKLLPQLTYLD 153

Query: 423 AKNNEIN 429
             + E  
Sbjct: 154 GYDREDQ 160

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 10/107 (9%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
           L FL + N        V     LP L    +S N + G +      +  L  L+LS NKL
Sbjct: 51  LEFLSLINVGLIS---VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 578 T--GEIPDHLAMCCVNLEFLSLSNN---SLKGHIFSRIFSLRNLRWL 619
                + + L      L+ L L N    +L  +  S    L  L +L
Sbjct: 108 KDISTL-EPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 920
           L L    L+  +   +  L +++ L LS N + G + +    L ++  L+LS NKL 
Sbjct: 54  LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 36/187 (19%), Positives = 57/187 (30%), Gaps = 57/187 (30%)

Query: 612 SLRNLRWLLLEGNHF-VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 670
           +   +R L+L+      G+I    ++  +L+ L L N  L                    
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI------------------- 62

Query: 671 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 730
              +         +L  L+ L++S+N I G                          +   
Sbjct: 63  --SVSN-----LPKLPKLKKLELSENRIFG------------------------GLDMLA 91

Query: 731 FNCSSLVTLDLSYNYLNGSIPDW--IDGLSQLSHLNLAHN---NLEGEVPIQLCRLNQLQ 785
               +L  L+LS N L   I     +  L  L  L+L +    NL          L QL 
Sbjct: 92  EKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150

Query: 786 LLDLSDN 792
            LD  D 
Sbjct: 151 YLDGYDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
           N +    P  F ++I L+ L L +N+L      + D L      L  L L  N L   + 
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL----TQLTVLDLGTNQLTV-LP 104

Query: 608 SRIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
           S +F  L +L+ L +  N    E+P+ + + + L  L L+ N L          L  L H
Sbjct: 105 SAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 667 I 667
            
Sbjct: 164 A 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 40/118 (33%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 689 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           QIL + DN I+   P  F  L  +K+++L  N L   L  G F + + L  LDL  N L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 748 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
             +P  + D L  L  L +  N L  E+P  + RL  L  L L  N L  +    FD 
Sbjct: 102 -VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 672 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 729
           N +    P  F  L +L+ L +  N +  +LP   F  L  +  + L  N L   L    
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAV 107

Query: 730 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 789
           F     L  L +  N L   +P  I+ L+ L+HL L  N L+        RL+ L    L
Sbjct: 108 FDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

Query: 790 SDN 792
             N
Sbjct: 167 FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 53/180 (29%), Gaps = 56/180 (31%)

Query: 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL 797
           L L  N +    P   D L  L  L L  N L   +P+ +   L QL +LDL  N L  L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 798 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 857
             + F               D+                                      
Sbjct: 104 PSAVF---------------DR-------------------------------------- 110

Query: 858 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           L  L  L + CNKL   +P  I  LT +  L L  N L       F  L  +    L  N
Sbjct: 111 LVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 33/103 (32%), Positives = 42/103 (40%), Gaps = 18/103 (17%)

Query: 74  LNASLFTPFQQLESLDLSWNNIAGCAENEGLERLS-----RLSKLKKLDLRGN-LCNNSI 127
           L   +F    QL  LDL  N          L  L      RL  LK+L +  N L    +
Sbjct: 79  LPVGVFDSLTQLTVLDLGTNQ---------LTVLPSAVFDRLVHLKELFMCCNKL--TEL 127

Query: 128 LSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
              + RL+ LT L L  N L+ SI    FD LS+L    +  N
Sbjct: 128 PRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)

Query: 114 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
           + L L  N            L +L  L+L  N L  ++    FDSL+ L  LD+  N++ 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM----GSFPSLNTLHLESN 221
            +  S  +  L  LK L +        NK L  +         L  L L+ N
Sbjct: 102 VLP-SAVFDRLVHLKELFM------CCNK-LTELPRGIERLTHLTHLALDQN 145

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 58.8 bits (141), Expect = 4e-09
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 19/195 (9%)

Query: 160 SNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLE 219
               ++D  + EI  +E       L  +    L+ + I+  N L       P+L +L + 
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMP--LLNNLKIKGTNNLSIGKKPRPNLKSLEII 201

Query: 220 SNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 279
           S     ++       +  NLE L L            +    P                 
Sbjct: 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK------------- 248

Query: 280 GQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLC 339
                 F +L+ L +  A        + +  + +P L+ + +S   L    +R+L   + 
Sbjct: 249 ----DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 340 PLAHLQELYIDNNDL 354
            + HL+ + +  N L
Sbjct: 305 KIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-06
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 33/224 (14%)

Query: 715 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 774
            + +N       EG F+        ++S+      +   +D +  L++L +   N     
Sbjct: 130 GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIG 188

Query: 775 PIQLCRLNQLQLL--DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 832
                 L  L+++   L D+ +  ++ S   N      Y                     
Sbjct: 189 KKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVED---------------- 232

Query: 833 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN---LTRIQTLN 889
                    F+         +       L  L +   +    +         L +++T++
Sbjct: 233 -------YGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 890 LSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 929
           +S   LT      +      ++H++ +++ YN LS ++ ++L  
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 7e-06
 Identities = 22/179 (12%), Positives = 60/179 (33%), Gaps = 15/179 (8%)

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRF 296
                +  ++  +       +  +  ++  L+    +    LS    P   +L+ L++  
Sbjct: 144 LFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR-PNLKSLEIIS 202

Query: 297 ARIALNTSFLQIIGES-MPSLKYLSLSGST---LGTNSSRILDQGLCP--LAHLQELYID 350
             +    S ++ I  S +P+L+ L L              +           +L+ L I 
Sbjct: 203 GGL--PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 351 NNDLRGSLPWCLANT---TSLRILDVSFNQLT---GSISSSPLVHLTSIEELRLSNNHF 403
           + + +  +      +     L  +D+S   LT     +    +  +  ++ + +  N+ 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.4 bits (114), Expect = 8e-06
 Identities = 24/198 (12%), Positives = 59/198 (29%), Gaps = 29/198 (14%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVA--R 133
           + +      L +L +   N                  LK L++      +S++  +    
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIG-------KKPRPNLKSLEIISGGLPDSVVEDILGSD 217

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLS 193
           L +L  L L   +                 E    D +++             LK L + 
Sbjct: 218 LPNLEKLVLYVGV-----------------EDYGFDGDMNVFRPLFSKDRFPNLKWLGIV 260

Query: 194 GVGIRDGN-KLLQSMGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTLDDSSLH 250
               ++   ++       P L T+ + +   T          +    +L+++ +  + L 
Sbjct: 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

Query: 251 ISLLQSIGSIFPSLKNLS 268
             + + +    P   ++S
Sbjct: 321 DEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 2e-05
 Identities = 32/215 (14%), Positives = 68/215 (31%), Gaps = 37/215 (17%)

Query: 449 LSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF 508
           +  N      F    +   + +E E+S I+ +   P  +L+    L  L +         
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP--VLDAMPLLNNLKI---KGTNNL 185

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGD-ILPSL----VYFNISMNALDGSIPS---- 559
            +       L+ L++ +      +  +I    LP+L    +Y  +     DG +      
Sbjct: 186 SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245

Query: 560 -SFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV--NLEFLSLSNNSLKGHIFSRIFSLRNL 616
            S      L++L + + +    + +      +   LE + +S   L              
Sbjct: 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-------------- 291

Query: 617 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS 651
                  +     +   + K   LK + +  N LS
Sbjct: 292 ------TDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 21/132 (15%)

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
           N+L       F  +  L  L L  NKL      + + L     +L +L+LS N L+  + 
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----TSLTYLNLSTNQLQS-LP 92

Query: 608 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGN 660
           + +F  L  L+ L L  N       QSL      K + LK L L  N L   +P      
Sbjct: 93  NGVFDKLTQLKELALNTNQL-----QSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 661 LKGLQHIVMPKN 672
           L  LQ+I +  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P     + L  N L   L  G F   +SL  L L  N L  S+P+ + + L+ L++LNL+
Sbjct: 27  PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNN-NSSPDKPF 821
            N L+        +L QL+ L L+ N L  L    FD       L    N   S PD  F
Sbjct: 85  TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 18/114 (15%)

Query: 568 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHF 626
             L L++N+L     D L     +L  L L  N L G I    F    +++ L L  N  
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90

Query: 627 VGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKN 672
                + +S         LK L L +N +S  +    G   +L  L  + +  N
Sbjct: 91  -----KEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           PL   ++ L+ N L     +G F     LV L+L  N L   I     +G S +  L L 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86

Query: 767 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 804
            N ++ E+  ++   L+QL+ L+L DN +  ++P  F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 17/115 (14%)

Query: 86  ESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV-----ARLSSLTSL 140
             L L+ N +     ++GL    RL  L KL+L+ N      L+ +        S +  L
Sbjct: 32  TELLLNDNELGR-ISSDGL--FGRLPHLVKLELKRN-----QLTGIEPNAFEGASHIQEL 83

Query: 141 HLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDLSG 194
            L  N ++  I  K F  L  L+ L++ DN+I    V  G +  L  L SL+L+ 
Sbjct: 84  QLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC--VMPGSFEHLNSLTSLNLAS 135

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 682 FCRLDSLQILDISDNNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 739
           F RL  L  L++  N ++  +    F   S I+++ L +N +  ++    F     L TL
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 740 DLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 768
           +L  N ++  +     + L+ L+ LNLA N
Sbjct: 108 NLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 15/106 (14%)

Query: 123 CNNSILSSV-ARL-SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG 180
           C    L  +   +    T L L+ N L        F  L +L +L++  N++  +E    
Sbjct: 15  CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNA 73

Query: 181 YRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 221
           + G   ++ L L        NK ++ +    F     L TL+L  N
Sbjct: 74  FEGASHIQELQLG------ENK-IKEISNKMFLGLHQLKTLNLYDN 112

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 13/94 (13%)

Query: 561 FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRN 615
           FG +  L  L+L  N+LT  I     +       +++ L L  N +K  I +++F  L  
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGA----SHIQELQLGENKIK-EISNKMFLGLHQ 103

Query: 616 LRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 648
           L+ L L  N  +  +   S    +SL  L L +N
Sbjct: 104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 8e-08
 Identities = 73/478 (15%), Positives = 144/478 (30%), Gaps = 119/478 (24%)

Query: 419 KIFDAKNNEIN----GEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 474
           K+    + +I        N   ++    Q     +  N+         +  +    +AEL
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 475 SHIKMIGEFPNWL--LENNTKLEFLYLVNDS-LAGPFRLPIHSHKRLRFLDVSNNNFQGH 531
             +     + N L  L N         V ++     F L        + L  +       
Sbjct: 235 RRLLKSKPYENCLLVLLN---------VQNAKAWNAFNL------SCKILLTTRF----- 274

Query: 532 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVN 591
              ++ D L +    +IS++    ++       + L++LD     L  E      +   N
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE------VLTTN 326

Query: 592 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSS--LKGLYLN--- 646
              LS+   S++  +           W  +  +     I  SL+       + ++     
Sbjct: 327 PRRLSIIAESIRDGL------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 647 -NNNLSGKIPR------WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 699
              +    IP       W   +K    +V+           +  +  SL  ++      +
Sbjct: 381 FPPSA--HIPTILLSLIWFDVIKSDVMVVV----------NKLHKY-SL--VEKQPKEST 425

Query: 700 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-----NGSIPDWI 754
            S+PS +  L +K  +     LH  + +               YN       +  IP ++
Sbjct: 426 ISIPSIYLELKVKLENEYA--LHRSIVD--------------HYNIPKTFDSDDLIPPYL 469

Query: 755 DG--LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF-DNTTLHESY 811
           D    S + H    H  L+     +   L ++  LD             F +    H+S 
Sbjct: 470 DQYFYSHIGH----H--LKNIEHPERMTLFRMVFLDFR-----------FLEQKIRHDST 512

Query: 812 NNNSSPD--------KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 861
             N+S          K +K     + P+   E+ +  I +F  K        +   LL
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 8e-07
 Identities = 92/488 (18%), Positives = 147/488 (30%), Gaps = 176/488 (36%)

Query: 22  RFALLRLKHFFTDPY-----DKG------ATDCCQWEGVECSNTTGRVIGLYLSETYSGE 70
           R ALL L+              G      A D C    V+C     ++            
Sbjct: 141 RQALLELRP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKI------------ 184

Query: 71  YWYLN-ASLFTP---FQQLESL----DLSWNNIAGCAEN------EGLERLSRLSKLKK- 115
           +W LN  +  +P    + L+ L    D +W + +  + N           L RL K K  
Sbjct: 185 FW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 116 ----LDLRGNLCNNSIL---------------SSVA-RLSSLTSLHLSHNILQGSIDAKE 155
               L L  N+ N                     V   LS+ T+ H+S +    ++   E
Sbjct: 244 ENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 156 FDSL---------SNL----------------EELDINDNEIDNVEVSRGYRGLRKLK-- 188
             SL          +L                E +       DN +    +    KL   
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVNCDKLTTI 358

Query: 189 ---SLD-LSGVGIRDGNKLLQSMGSFP-----SLNTLHL--ESNNFTATLTTTQELHNFT 237
              SL+ L     R   K+   +  FP         L L       +  +    +LH ++
Sbjct: 359 IESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 238 NLE-------------YLTL-----DDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS 279
            +E             YL L     ++ +LH S++      +   K            L 
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----YNIPKTFDSDDLIPP-YLD 470

Query: 280 GQGFP----HFKSLEHLDM--RFARIALNTSFLQ--IIGESMPSLKYLSLSGSTLGTNSS 331
              +     H K++EH +    F  + L+  FL+  I  +S       + SGS L T   
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA----WNASGSILNT--- 523

Query: 332 RILDQGLCPLAHLQEL-----YI-DN--------NDLRGSLPWC---LANTTSLRILDVS 374
                       LQ+L     YI DN        N +   LP     L  +    +L ++
Sbjct: 524 ------------LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 375 FNQLTGSI 382
                 +I
Sbjct: 572 LMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 3e-05
 Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 97/330 (29%)

Query: 739  LDLSYNYLNGSI------PDWIDGLSQLSHLNLAHNNLEGEVPIQLCR---LNQLQ--LL 787
            L ++Y +L   I      P  +     +   +  +N+ +      + R     +L+  LL
Sbjct: 87   LRINYKFLMSPIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 788  DLSDNN---LHGL---------IPSCFDNTTLHE--------SYNNNSSP---------- 817
            +L       + G+         +  C       +        +  N +SP          
Sbjct: 146  ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 818  ----DKPFKT----SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL------SLLAG 863
                D  + +    S +I     S++ ++  + +             VL           
Sbjct: 206  LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNA 261

Query: 864  LDLSCNKLVGHIPPQIGNLTR-IQTLNLSHNNLTGTIPLTFSN--LRHIESLDLSYNKLS 920
             +LSC  L+          TR  Q  +      T  I L   +  L   E   L    L 
Sbjct: 262  FNLSCKILL---------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 921  ---GKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICR 977
                 +PR+++  N   + I+A       I +  A +  +   + D              
Sbjct: 313  CRPQDLPREVLTTNPRRLSIIA-----ESIRDGLATWDNWKHVNCD-------------- 353

Query: 978  SLATMSEASTSNEGDDNLIDMDSFFITFTI 1007
             L T+ E+S +        +    F   ++
Sbjct: 354  KLTTIIESSLNVLEPA---EYRKMFDRLSV 380

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 672 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CFYPL-SIKQVHLSKNMLHGQLKEGT 729
             L       F  L  L  L++  N +  +L +  F  L  +  + L+ N L   L  G 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGV 102

Query: 730 FFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLL 787
           F + + L  L L  N L  S+P  + D L++L  L L  N L+  +P     +L  LQ L
Sbjct: 103 FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL 160

Query: 788 DLSDNNLHGLIPSCFDN 804
            LS N L  +    FD 
Sbjct: 161 SLSTNQLQSVPHGAFDR 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 45/158 (28%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 551 NALDGSIPSSFGNVIFLQFLDLSNNKLT---GEIPDHLAMCCVNLEFLSLSNNSLKGHIF 607
             L     ++F  +  L +L+L  N+L      + D L      L  L L+NN L   + 
Sbjct: 45  TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGLANNQLAS-LP 99

Query: 608 SRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPRWLG-- 659
             +F  L  L  L L GN       +SL      + + LK L LN N L   IP   G  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-----KSLPSGVFDRLTKLKELRLNTNQLQ-SIPA--GAF 151

Query: 660 -NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 696
             L  LQ + +  N L+      F RL  LQ + +  N
Sbjct: 152 DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 22/161 (13%)

Query: 114 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
           +KLDL+         ++   L+ LT L+L +N LQ ++ A  FD L+ L  L + +N++ 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSFPS---LNTLHLESNNFTATLT 228
           ++     +  L +L  L L       GN+ L+S+  G F     L  L L +N   +   
Sbjct: 97  SLP-LGVFDHLTQLDKLYLG------GNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

Query: 229 TTQELHNFTNLEYLTLDDSSLHISLLQSI-GSIFPSLKNLS 268
                  F  L  L     SL  + LQS+    F  L  L 
Sbjct: 149 GA-----FDKLTNLQ--TLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)

Query: 689 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           + LD+    ++    + F  L+ +  ++L  N L   L  G F + + L TL L+ N L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 748 GSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN- 804
            S+P  + D L+QL  L L  N L+  +P  +  RL +L+ L L+ N L  +    FD  
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154

Query: 805 ---TTLHESYNNNSS-PDKPF 821
               TL  S N   S P   F
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 51/188 (27%), Positives = 72/188 (38%), Gaps = 41/188 (21%)

Query: 590 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLY 644
            + E L L +  L     +    L  L WL L+ N       Q+LS       + L  L 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-----QTLSAGVFDDLTELGTLG 89

Query: 645 LNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 704
           L NN L+  +P  +                       F  L  L  L +  N +  SLPS
Sbjct: 90  LANNQLA-SLPLGV-----------------------FDHLTQLDKLYLGGNQLK-SLPS 124

Query: 705 -CFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLS 761
             F  L  +K++ L+ N L   +  G F   ++L TL LS N L  S+P    D L +L 
Sbjct: 125 GVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182

Query: 762 HLNLAHNN 769
            + L   N
Sbjct: 183 TITL-FGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 39/184 (21%)

Query: 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 798
           LDL    L         GL++L+ LNL +N L+         L +L  L L++N L  L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 799 PSCFDNTT----LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQ 854
              FD+ T    L+   N   S             P G  ++                  
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSL------------PSGVFDR------------------ 129

Query: 855 GRVLSLLAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
              L+ L  L L+ N+L   IP      LT +QTL+LS N L       F  L  ++++ 
Sbjct: 130 ---LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

Query: 914 LSYN 917
           L  N
Sbjct: 186 LFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 16/170 (9%)

Query: 237 TNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGV--LSGQGFPHFKSLEHLDM 294
            + E L L  + L         + F  L  L+    + N +  LS   F     L  L +
Sbjct: 35  ADTEKLDLQSTGLA----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90

Query: 295 RFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDL 354
              ++    S    + + +  L  L L G+ L +  S + D+    L  L+EL ++ N L
Sbjct: 91  ANNQL---ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQL 143

Query: 355 RGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
           + S+P       T+L+ L +S NQL  S+       L  ++ + L  N F
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P   +++ L    L   L + TF   + L  L+L YN L  ++   + D L++L  L LA
Sbjct: 34  PADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLA 91

Query: 767 HNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYN 812
           +N L          L QL  L L  N L  L    FD       L  + N
Sbjct: 92  NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)

Query: 312 SMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRI 370
            +  L +L+L  + L T S+ + D     L  L  L + NN L  SLP     + T L  
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAGVFDD----LTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111

Query: 371 LDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR 404
           L +  NQL  S+ S     LT ++ELRL+ N  +
Sbjct: 112 LYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 13/99 (13%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSLKGHIFSRIF 611
            +P    N   L  +DLSNN+++  +      ++      L  L LS N L+  I  R F
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNM----TQLLTLILSYNRLRC-IPPRTF 98

Query: 612 -SLRNLRWLLLEGNHFVGEIPQ-SLSKCSSLKGLYLNNN 648
             L++LR L L GN  +  +P+ + +  S+L  L +  N
Sbjct: 99  DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 15/113 (13%)

Query: 114 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
            +L L GN     +   ++    LT + LS+N +  ++  + F +++ L  L ++ N + 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 221
            +   R + GL+ L+ L L       GN  +  +  G+F    +L+ L + +N
Sbjct: 92  CIPP-RTFDGLKSLRLLSL------HGND-ISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 689 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
             L +  N  +  +P        +  + LS N +   L   +F N + L+TL LSYN L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLR 91

Query: 748 GSIPDWI-DGLSQLSHLNLAHNNL 770
             IP    DGL  L  L+L  N++
Sbjct: 92  -CIPPRTFDGLKSLRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 923
           L L  N+    +P ++ N   +  ++LS+N ++     +FSN+  + +L LSYN+L   I
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-I 93

Query: 924 PRQLVD-LNTLAIFIVAYNNLSGKIPE 949
           P +  D L +L +  +  N++S  +PE
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 60/339 (17%), Positives = 109/339 (32%), Gaps = 39/339 (11%)

Query: 76  ASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLS 135
           A L  P + L++L+ +   I       G + L     L  L       N    + V  LS
Sbjct: 16  AQLGCPIKNLDALENA-QAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV--LS 72

Query: 136 SLTSLHLSHNILQGSIDAKEF-----DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190
           SL  L+L+   +   +               L+E+++   ++D   +        + + L
Sbjct: 73  SLRQLNLAGVRM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKL 131

Query: 191 DLSGVGIRD-GNKLLQSMGSFP--SLNTLHLESNNFTAT--LTTTQELHNFTNLEYLTLD 245
            L    +     K L+ +       + TL L +N  TA       + L   T++ +L+L 
Sbjct: 132 GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191

Query: 246 DSSLHISLLQSIGSIF---PSLKNLSMSGCEV--NGVLS-GQGFPHFKSLEHLDMRFARI 299
            + L    L+ + +       L+ L+++         L+  +      SLE L + F  +
Sbjct: 192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

Query: 300 ----ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN--- 352
                     L    E    +      G+ +    S IL +    L       +  +   
Sbjct: 252 SSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLEL 311

Query: 353 ---DLRGSL-----PWCLANT----TSLRILDVSFNQLT 379
              DL  S      PW  A        +R L        
Sbjct: 312 LLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 50/356 (14%), Positives = 91/356 (25%), Gaps = 89/356 (25%)

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLC-PLAHLQELYIDNNDLRGSLPWCLANT-TSL 368
           E + SL+ L+L+G  +      ++   L      L E+ + +  L  +    L       
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128

Query: 369 RILDVSFNQLT----GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 424
           R L +  N L       +    L     I  LRLSNN       +  L            
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT-AAGVAVL------------ 175

Query: 425 NNEINGEINESHSLTPKFQLKSLSLSSNY-GDSVTFPKFLYHQHELKEAELSHIKMIGEF 483
                        L     +  LSL     GD                     ++++   
Sbjct: 176 ----------MEGLAGNTSVTHLSLLHTGLGD-------------------EGLELLAA- 205

Query: 484 PNWLLENNTKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
               L+ N +L+ L +  +      A         H  L  L +  N         + D+
Sbjct: 206 ---QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDL 262

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
             +                        +         ++           V L  +  + 
Sbjct: 263 GGAAE------------------GGARVVVSLTEGTAVS-------EYWSVILSEVQRNL 297

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC----SSLKGLYLNNNNLS 651
           NS      +R+     L    LE +      P   ++       ++ L     +  
Sbjct: 298 NSWDR---ARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 72/245 (29%)

Query: 534 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP--DHLAMCCVN 591
               + L S+     + + +  S+      +  +++L L  NKL  +I     L     N
Sbjct: 34  AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISALKEL----TN 86

Query: 592 LEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYL 645
           L +L L+ N L+  + + +F  L NL+ L+L  N       QSL      K ++L  L L
Sbjct: 87  LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-----QSLPDGVFDKLTNLTYLNL 140

Query: 646 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 705
            +N L   +P+ +                       F +L +L  LD+S N +  SLP  
Sbjct: 141 AHNQLQ-SLPKGV-----------------------FDKLTNLTELDLSYNQLQ-SLP-- 173

Query: 706 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 764
                                EG F   + L  L L  N L  S+PD + D L+ L ++ 
Sbjct: 174 ---------------------EGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIW 211

Query: 765 LAHNN 769
           L H+N
Sbjct: 212 L-HDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 11/175 (6%)

Query: 635 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
                      L   +++  + +    L  +  I+   + ++         L +++ L +
Sbjct: 15  DDAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLAL 70

Query: 694 SDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 752
             N +   + +    L ++  + L+ N L   L  G F   ++L  L L  N L  S+PD
Sbjct: 71  GGNKLH-DISA-LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPD 126

Query: 753 WI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
            + D L+ L++LNLAHN L+        +L  L  LDLS N L  L    FD  T
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT 181

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 638 SSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
           +S+  +  NN+++     I      L  ++++ +  N L   I      L +L  L ++ 
Sbjct: 41  NSIDQIIANNSDIKSVQGIQY----LPNVRYLALGGNKLH-DISA-LKELTNLTYLILTG 94

Query: 696 NNISGSLPS-CFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
           N +  SLP+  F  L+ +K++ L +N L   L +G F   ++L  L+L++N L  S+P  
Sbjct: 95  NQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ-SLPKG 151

Query: 754 I-DGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 804
           + D L+ L+ L+L++N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 152 VFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 42/212 (19%), Positives = 75/212 (35%), Gaps = 52/212 (24%)

Query: 86  ESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHN 145
              +L   ++            + L+ + ++    +  +   +  +  L ++  L L  N
Sbjct: 22  IKANLKKKSVTD------AVTQNELNSIDQIIANNS--DIKSVQGIQYLPNVRYLALGGN 73

Query: 146 ILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ 205
            L   I A     L+NL  L +  N++ ++  +  +  L  LK L L        N+ LQ
Sbjct: 74  KLH-DISA--LKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVL------VENQ-LQ 122

Query: 206 SM--GSFPSL---NTLHLESNNFTA-------TLTTTQELH---------------NFTN 238
           S+  G F  L     L+L  N   +        LT   EL                  T 
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ 182

Query: 239 LEYLTLDDSSLHISLLQSI-GSIFPSLKNLSM 269
           L+ L      L+ + L+S+   +F  L +L  
Sbjct: 183 LKDL-----RLYQNQLKSVPDGVFDRLTSLQY 209

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)

Query: 492 TKLEFLYLVNDSL----AGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 547
           T L +L L  + L     G F         L+ L +  N  Q  +P  + D L +L Y N
Sbjct: 85  TNLTYLILTGNQLQSLPNGVFDKL----TNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139

Query: 548 ISMNALDGSIPSS-FGNVIFLQFLDLSNNKLTGEIP----DHLAMCCVNLEFLSLSNNSL 602
           ++ N L  S+P   F  +  L  LDLS N+L   +P    D L      L+ L L  N L
Sbjct: 140 LAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL----TQLKDLRLYQNQL 193

Query: 603 KGHIFSRIF-SLRNLRWLLLEGN 624
           K  +   +F  L +L+++ L  N
Sbjct: 194 KS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 16/144 (11%)

Query: 261 FPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG--ESMPSLKY 318
              L ++       + + S QG  +  ++ +L        L  + L  I   + + +L Y
Sbjct: 37  QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------LGGNKLHDISALKELTNLTY 89

Query: 319 LSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLP-WCLANTTSLRILDVSFNQ 377
           L L+G+ L +  + + D+    L +L+EL +  N L+ SLP       T+L  L+++ NQ
Sbjct: 90  LILTGNQLQSLPNGVFDK----LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQ 144

Query: 378 LTGSISSSPLVHLTSIEELRLSNN 401
           L  S+       LT++ EL LS N
Sbjct: 145 LQ-SLPKGVFDKLTNLTELDLSYN 167

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 9e-05
 Identities = 50/232 (21%), Positives = 81/232 (34%), Gaps = 52/232 (22%)

Query: 701 SLPS-CFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759
             P          + +L K  +       T    +S+  +  + + +  S+   I  L  
Sbjct: 12  IFPDDA--FAETIKANLKKKSV---TDAVTQNELNSIDQIIANNSDIK-SVQG-IQYLPN 64

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN----TTLHESYNNNS 815
           + +L L  N L  ++   L  L  L  L L+ N L  L    FD       L    N   
Sbjct: 65  VRYLALGGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 816 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 875
           S             P G        +F+  T              L  L+L+ N+L   +
Sbjct: 123 SL------------PDG--------VFDKLTN-------------LTYLNLAHNQLQS-L 148

Query: 876 PPQI-GNLTRIQTLNLSHNNLTGTIPL-TFSNLRHIESLDLSYNKLSGKIPR 925
           P  +   LT +  L+LS+N L  ++P   F  L  ++ L L  N+L   +P 
Sbjct: 149 PKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS-VPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 40/154 (25%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLS-----RLSKLKKLDLRGNLCNNSILSSV-----AR 133
            L  L L+ N          L+ L      +L+ LK+L L  N      L S+      +
Sbjct: 86  NLTYLILTGN---------QLQSLPNGVFDKLTNLKELVLVENQ-----LQSLPDGVFDK 131

Query: 134 LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRG-YRGLRKLKSLDL 192
           L++LT L+L+HN LQ S+    FD L+NL ELD++ N++    +  G +  L +LK L L
Sbjct: 132 LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFDKLTQLKDLRL 188

Query: 193 SGVGIRDGNKLLQSM--GSF---PSLNTLHLESN 221
                   N+ L+S+  G F    SL  + L  N
Sbjct: 189 ------YQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 21/115 (18%)

Query: 568 QFLDLSNNKLTGEIP---DHLAMCCVNLEFLSLSNNSLKGHIFSRIF-SLRNLRWLLLEG 623
             L+L +NKL        D L      L  LSLS N ++  +   +F  L  L  L L  
Sbjct: 31  TRLELESNKLQSLPHGVFDKL----TQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHE 85

Query: 624 NHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKN 672
           N       QSL      K + LK L L+ N L   +P      L  LQ I +  N
Sbjct: 86  NKL-----QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLA 766
           P S  ++ L  N L   L  G F   + L  L LS N +  S+PD + D L++L+ L L 
Sbjct: 27  PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84

Query: 767 HNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDN 804
            N L+  +P  +  +L QL+ L L  N L  +    FD 
Sbjct: 85  ENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDR 122

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 25/138 (18%), Positives = 50/138 (36%), Gaps = 27/138 (19%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLA-------HLQELYIDNNDLRGSLPWCLANT- 365
           P L+ ++L+      N   I    L   A       ++++  I        + + LA   
Sbjct: 36  PDLEEVNLN------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89

Query: 366 ---TSLRILDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVS-----LEPLF 413
               +L+ L+V  N ++G    ++  + L   TS+ ELR+ N    +  +        L 
Sbjct: 90  KVNNTLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLE 148

Query: 414 NHSKLKIFDAKNNEINGE 431
            ++ L  F     +    
Sbjct: 149 KNTTLLKFGYHFTQQGPR 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1056
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-20
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.3 bits (225), Expect = 2e-20
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
           ++P         LD+ NN        +  + L +L    +  N +    P +F  ++ L+
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
            L LS N+L  E+P+ +      L         ++  +F+   +   +  L        G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG 140

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
               +      L  + + + N++  IP+  G    L  + +  N +          L++L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 689 QILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
             L +S N+IS            ++++HL+ N L          +   +  + L  N ++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS 255

Query: 748 G------SIPDWIDGLSQLSHLNLAHNNLE 771
                    P +    +  S ++L  N ++
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.2 bits (217), Expect = 2e-19
 Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 20/294 (6%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           ++P+ L        L L NN ++        NLK L  +++  N +    P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           + L +S N +   LP        +       +   +       N   +V L  +    +G
Sbjct: 82  ERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 140

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 808
                  G+ +LS++ +A  N+     I       L  L L  N +  +  +        
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 809 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 868
                + +           + P       + E+     K +           +  + L  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPH------LRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 869 NKL------VGHIPPQIGNLTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDL 914
           N +          P           ++L  N +      P TF  +    ++ L
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 57/281 (20%), Positives = 96/281 (34%), Gaps = 14/281 (4%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
           D+ P     ++  N +       F N+  L  L L NNK++   P   A   V LE L L
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 86

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 657
           S N LK        +L+ LR    E       +   L++   ++ L  N    SG     
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGA 145

Query: 658 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
              +K L +I +   ++     +      SL  L +  N I+    +    L+       
Sbjct: 146 FQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG----- 772
                  +  G+  N   L  L L+ N L   +P  +     +  + L +NN+       
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 773 -EVPIQLCRLNQLQLLDLSDNNLH--GLIPSCFDNTTLHES 810
              P    +      + L  N +    + PS F    +  +
Sbjct: 262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.2 bits (191), Expect = 4e-16
 Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 31/270 (11%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
           L+ +  S+  L  ++P  L     +   L L NN +         +L+NL  L+L  N  
Sbjct: 12  LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH-------------------- 666
               P + +    L+ LYL+ N L     +    L+ L+                     
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 667 ---IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 723
              +        G     F  +  L  + I+D NI+ ++P    P S+ ++HL  N +  
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP-SLTELHLDGNKITK 185

Query: 724 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 783
                +    ++L  L LS+N ++      +     L  L+L +N L  +VP  L     
Sbjct: 186 VD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 784 LQLLDLSDNNLHGLIPSCFDNTTLHESYNN 813
           +Q++ L +NN+  +  + F     +    +
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKAS 273

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.4 bits (163), Expect = 2e-12
 Identities = 37/217 (17%), Positives = 63/217 (29%), Gaps = 9/217 (4%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
                LDL  N +          L  L  L L +N +    P     L +L+ L LS N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
           L  L             + N                   +    +         +     
Sbjct: 91  LKELPEKMPKTLQELRVHENE------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
             + +  L+ + ++   +   IP   G    +  L+L  N +T     +   L ++  L 
Sbjct: 145 AFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 914 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 950
           LS+N +S      L +   L    +  N L       
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 1e-11
 Identities = 57/287 (19%), Positives = 97/287 (33%), Gaps = 34/287 (11%)

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
              +LD+ +N I+                         +K+G F N  +L TL L  N +
Sbjct: 32  DTALLDLQNNKITE------------------------IKDGDFKNLKNLHTLILINNKI 67

Query: 747 NGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 806
           +   P     L +L  L L+ N L+    +       LQ L + +N +  +  S F+   
Sbjct: 68  SKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHENEITKVRKSVFNGLN 124

Query: 807 LHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 866
                   ++P K              +    +     TT          +   L  L L
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT------IPQGLPPSLTELHL 178

Query: 867 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 926
             NK+       +  L  +  L LS N+++     + +N  H+  L L+ NKL  K+P  
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 237

Query: 927 LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 973
           L D   + +  +  NN+S              K +      L   P+
Sbjct: 238 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 50/293 (17%), Positives = 88/293 (30%), Gaps = 44/293 (15%)

Query: 314 PSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDV 373
           P    L L  + +    + I D     L +L  L + NN +    P   A    L  L +
Sbjct: 31  PDTALLDLQNNKI----TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 374 SFNQLTGSISSSPLVHLTSIEELRLSNNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGE 431
           S NQL       P     +++ELR+  N            L     +++          E
Sbjct: 87  SKNQLK----ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 432 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 491
                 +    +L  + ++                             I   P  L  + 
Sbjct: 143 NGAFQGMK---KLSYIRIADT--------------------------NITTIPQGLPPS- 172

Query: 492 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 551
             L  L+L  + +       +     L  L +S N+             P L   +++ N
Sbjct: 173 --LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNN 229

Query: 552 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 604
            L   +P    +  ++Q + L NN ++    +       N +  S S  SL  
Sbjct: 230 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 43/273 (15%), Positives = 90/273 (32%), Gaps = 22/273 (8%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSH 144
              LDL  N I    + +       L  L  L L  N  +     + A L  L  L+LS 
Sbjct: 33  TALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 145 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLL 204
           N L+  +  K   +L  L   +    ++     +     L ++  ++L    ++      
Sbjct: 89  NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG----LNQMIVVELGTNPLKSSGIEN 143

Query: 205 QSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSL 264
            +      L+ + +   N      TT       +L  L LD + +      S+  +   L
Sbjct: 144 GAFQGMKKLSYIRIADTNI-----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN-L 197

Query: 265 KNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGS 324
             L +S   ++ V +G    +   L  L +   ++      L         ++ + L  +
Sbjct: 198 AKLGLSFNSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLA----DHKYIQVVYLHNN 252

Query: 325 TLGT--NSSRILDQGLCPLAHLQELYIDNNDLR 355
            +    ++           A    + + +N ++
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 2/88 (2%)

Query: 874 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 933
            +P  +        L+L +N +T      F NL+++ +L L  NK+S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 934 AIFIVAYNNLSGKIPEWTAQFATFNKSS 961
               ++ N L     +            
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHE 109

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 6e-20
 Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 4/259 (1%)

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
            I  +     +  N +     +SF     L  L L +N L            +  +    
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW 657
            N  L+    +    L  L  L L+        P      ++L+ LYL +N L       
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 658 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 717
             +L  L H+ +  N +       F  L SL  L +  N ++   P  F  L        
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 718 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ 777
                  L         +L  L L+ N             + L     + + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQ- 266

Query: 778 LCRLNQLQLLDLSDNNLHG 796
             RL    L  L+ N+L G
Sbjct: 267 --RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 4e-15
 Identities = 56/294 (19%), Positives = 92/294 (31%), Gaps = 36/294 (12%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
            +P  +   ++ + ++L+ N +S          + L  + +  N L       F  L  L
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 689 QILDISDNNISGSL-PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           + LD+SDN    S+ P+ F+ L              +L  G F   ++L  L L  N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 748 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
               D    L  L+HL L  N +          L+ L  L L  N +  + P  F +  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD--L 200

Query: 808 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 867
                     +           P  +                           L  L L+
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRA---------------------------LQYLRLN 233

Query: 868 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 921
            N  V            +Q    S + +  ++P     L   +   L+ N L G
Sbjct: 234 DNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 60/244 (24%), Positives = 83/244 (34%), Gaps = 4/244 (1%)

Query: 480 IGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI 539
           I   P         L  L+L ++ LA            L  LD+S+N     +       
Sbjct: 44  ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103

Query: 540 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L  L   ++    L    P  F  +  LQ+L L +N L     D       NL  L L  
Sbjct: 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHG 162

Query: 600 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 659
           N +          L +L  LLL  N      P +      L  LYL  NNLS      L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 660 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKN 719
            L+ LQ++ +  N               LQ    S + +  SLP       +K+  L+ N
Sbjct: 223 PLRALQYLRLNDNPWVCDCRARP-LWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--LAAN 279

Query: 720 MLHG 723
            L G
Sbjct: 280 DLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 43/242 (17%), Positives = 73/242 (30%), Gaps = 7/242 (2%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
                VT       L  ++P  I   +    + L  N +             L +L L  
Sbjct: 9   YNEPKVTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N L  +  + F    L E  + + +         +  G         L +     + +  
Sbjct: 66  NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL---HTLHLDRCGLQELGP 122

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIES 911
                + +L     L  N L         +L  +  L L  N ++      F  L  ++ 
Sbjct: 123 GLFRGLAALQYL-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 912 LDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGL 971
           L L  N+++   P    DL  L    +  NNLS    E  A          + NP++C  
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 972 PL 973
             
Sbjct: 242 RA 243

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 39/262 (14%), Positives = 77/262 (29%), Gaps = 34/262 (12%)

Query: 342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQ------------------------ 377
           A  Q +++  N +            +L IL +  N                         
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 378 LTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHS 437
              S+  +    L  +  L L     +  +        + L+    ++N +    ++  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD--T 148

Query: 438 LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFL 497
                 L  L L  N   SV    F    H L    L   ++    P+   +    +   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 498 YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI 557
              N+  A P    +   + L++L +++N +          +   L  F  S + +  S+
Sbjct: 208 LFANNLSALPTE-ALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSL 264

Query: 558 PSSFGNVIFLQFLDLSNNKLTG 579
           P             L+ N L G
Sbjct: 265 PQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 52/268 (19%), Positives = 98/268 (36%), Gaps = 18/268 (6%)

Query: 113 LKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEI 172
            +++ L GN  ++   +S     +LT L L  N+L     A         +    ++ ++
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 173 DNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQE 232
            +V+    + GL +L +L L   G+++            +L  L+L+ N   A    T  
Sbjct: 94  RSVD-PATFHGLGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPDDT-- 148

Query: 233 LHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHL 292
             +  NL +L L  + +           F  L +L       N V        F+ L  L
Sbjct: 149 FRDLGNLTHLFLHGNRISSV----PERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 293 DMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
              +      ++        + +L+YL L+      N      +     A LQ+    ++
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLND-----NPWVCDCRARPLWAWLQKFRGSSS 258

Query: 353 DLRGSLPWCLANTTSLRILDVSFNQLTG 380
           ++  SLP  LA      +  ++ N L G
Sbjct: 259 EVPCSLPQRLAG---RDLKRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.4 bits (223), Expect = 1e-19
 Identities = 63/361 (17%), Positives = 119/361 (32%), Gaps = 25/361 (6%)

Query: 341 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 400
           L  +  L  D   ++ S+   +    +L  ++ S NQLT       L  L  I       
Sbjct: 43  LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 401 NHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFP 460
                  +L  L   +         + +    N +        +  +S  S         
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 461 KFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEF-----LYLVNDSLAGPFRLPIHSH 515
                      A L+ ++ +    N + + +   +      L   N+ ++     P+   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT--PLGIL 218

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
             L  L ++ N  +    +     L +L   +++ N +    P     +  L  L L  N
Sbjct: 219 TNLDELSLNGNQLKDIGTLA---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN 273

Query: 576 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 635
           +++   P        NLE      N  +    S I +L+NL +L L  N+     P  +S
Sbjct: 274 QISNISPLAGLTALTNLEL-----NENQLEDISPISNLKNLTYLTLYFNNISDISP--VS 326

Query: 636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISD 695
             + L+ L+  NN +S      L NL  +  +    N +    P     L  +  L ++D
Sbjct: 327 SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

Query: 696 N 696
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 2e-18
 Identities = 61/386 (15%), Positives = 115/386 (29%), Gaps = 43/386 (11%)

Query: 570 LDLSNNKLTGEIP-DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
             L    +T  +    L      +  L      +K      +  L NL  +    N    
Sbjct: 27  TVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 80

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRW------LGNLKGLQHIVMPKNHLEGPIPVEF 682
             P  L   + L  + +NNN ++   P           L   Q   +        +    
Sbjct: 81  ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 138

Query: 683 CRLDSLQILDISDNNISGSLPSCFYPLSI-------KQVHLSKNMLHGQLKEGTFFNCSS 735
              +++  +       S    S    ++          +       +           ++
Sbjct: 139 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTN 198

Query: 736 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           L +L  + N ++   P  I   + L  L+L  N L+      L  L  L  LDL++N + 
Sbjct: 199 LESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254

Query: 796 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG 855
            L P              N   +       +                E     +      
Sbjct: 255 NLAPLSGLTKLTELKLGANQISNISPLAGLTAL-----------TNLELNENQLEDISPI 303

Query: 856 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS 915
             L  L  L L  N +    P  + +LT++Q L  ++N ++     + +NL +I  L   
Sbjct: 304 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAG 359

Query: 916 YNKLSGKIPRQLVDLNTLAIFIVAYN 941
           +N++S   P  L +L  +    +   
Sbjct: 360 HNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 9e-17
 Identities = 75/409 (18%), Positives = 137/409 (33%), Gaps = 64/409 (15%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
             +   N    +     D + +L    + + ++DG        +  L  ++ SNN+LT  
Sbjct: 27  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQLTDI 81

Query: 581 IP------------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG 628
            P            ++  +  +       +   L                  L       
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
                +S  S L  L   +        + L NL  L+ + +  N           +L +L
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDISVLAKLTNL 199

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           + L  ++N IS   P      ++ ++ L+ N L      GT  + ++L  LDL+ N ++ 
Sbjct: 200 ESLIATNNQISDITPLGILT-NLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 255

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 808
             P  + GL++L+ L L  N +    P+          L+ +       I +  + T L 
Sbjct: 256 LAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT 313

Query: 809 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSC 868
             +NN                        I +I   ++           L+ L  L  + 
Sbjct: 314 LYFNN------------------------ISDISPVSS-----------LTKLQRLFFAN 338

Query: 869 NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 917
           NK+       + NLT I  L+  HN ++   PL  +NL  I  L L+  
Sbjct: 339 NKVSD--VSSLANLTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 61/400 (15%), Positives = 139/400 (34%), Gaps = 38/400 (9%)

Query: 157 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 216
            +L+   +  +    + +         L ++ +L    +GI+     +  +    +L  +
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGIKS----IDGVEYLNNLTQI 71

Query: 217 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI----SLLQSIGSIFPSLKNLSMSGC 272
           +  +N     LT    L N T L  + ++++ +      + L ++  +      ++    
Sbjct: 72  NFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127

Query: 273 EVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSR 332
             N     +      ++  +       +L           +  L  L+       +++  
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187

Query: 333 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 392
                L  L +L+ L   NN +    P      T+L  L ++ NQL        L  LT+
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD---IGTLASLTN 242

Query: 393 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSN 452
           + +L L+NN      +L PL   +KL       N+I+        ++P   L +L+    
Sbjct: 243 LTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISN-------ISPLAGLTALTNLEL 292

Query: 453 YGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPI 512
             + +     + +   L    L    +    P   + + TKL+ L+  N+ ++      +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVSDVS--SL 347

Query: 513 HSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNA 552
            +   + +L   +N      P+     L  +    ++  A
Sbjct: 348 ANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.9 bits (149), Expect = 1e-10
 Identities = 68/370 (18%), Positives = 125/370 (33%), Gaps = 50/370 (13%)

Query: 107 LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD 166
            + L ++  L           +  V  L++LT ++ S+N L          +L+ L ++ 
Sbjct: 40  QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQINFSNNQLTDIT---PLKNLTKLVDIL 94

Query: 167 INDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTAT 226
           +N+N+I ++        L  L   +     I     L        S NT+   S     T
Sbjct: 95  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 154

Query: 227 LTTTQELHNFTN----LEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQG 282
                   N       L  LT  +     S   S  S+   L NL       N +     
Sbjct: 155 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 214

Query: 283 FPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLA 342
                +L+ L +   ++    +       S+ +L  L L+ + +   +       L  L 
Sbjct: 215 LGILTNLDELSLNGNQLKDIGTL-----ASLTNLTDLDLANNQISNLAP------LSGLT 263

Query: 343 HLQELYIDNNDLRGSLP--------------------WCLANTTSLRILDVSFNQLTGSI 382
            L EL +  N +    P                      ++N  +L  L + FN ++   
Sbjct: 264 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 323

Query: 383 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
              P+  LT ++ L  +NN      SL  L   + +    A +N+I+     ++ LT   
Sbjct: 324 ---PVSSLTKLQRLFFANNKVSDVSSLANL---TNINWLSAGHNQISDLTPLAN-LT--- 373

Query: 443 QLKSLSLSSN 452
           ++  L L+  
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 4e-10
 Identities = 52/358 (14%), Positives = 110/358 (30%), Gaps = 39/358 (10%)

Query: 263 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 322
            +  L        G+ S  G  +  +L  ++    ++   T       +++  L  + ++
Sbjct: 45  QVTTLQADR---LGIKSIDGVEYLNNLTQINFSNNQLTDITPL-----KNLTKLVDILMN 96

Query: 323 GSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSI 382
            + +   +       L  L        D + L+          +S  I D+S      S+
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 383 SSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 442
                 +  +  +   +              +   +         +    N+   +TP  
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 443 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 502
            L +L   S  G+ +     L     L + +L++ ++    P   L   TKL  L L  +
Sbjct: 217 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN 273

Query: 503 SLAGPFRLPIHSHKR--------------------LRFLDVSNNNFQGHIPVEIGDILPS 542
            ++    L   +                       L +L +  NN     PV     L  
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS---SLTK 330

Query: 543 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 600
           L     + N +  S  SS  N+  + +L   +N+++   P         +  L L++ 
Sbjct: 331 LQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTPLA---NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 3e-08
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 72  WYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSV 131
              + S  +  + L  L L +NNI        +  +S L+KL++L    N    S +SS+
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNI------SDISPVSSLTKLQRLFFANN--KVSDVSSL 347

Query: 132 ARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN 170
           A L+++  L   HN +          +L+ + +L +ND 
Sbjct: 348 ANLTNINWLSAGHNQISDLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 2e-07
 Identities = 40/184 (21%), Positives = 69/184 (37%), Gaps = 38/184 (20%)

Query: 82  FQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLH 141
              L+ L L+ N +      + +  L+ L+ L  LDL  N  +N  L+ ++ L+ LT L 
Sbjct: 218 LTNLDELSLNGNQL------KDIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELK 269

Query: 142 LSHNILQGSIDAKEFDS-------------------LSNLEELDINDNEIDNVEVSRGYR 182
           L  N +          +                   L NL  L +  N I ++       
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS---PVS 326

Query: 183 GLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYL 242
            L KL+ L  +   + D    + S+ +  ++N L    N     ++    L N T +  L
Sbjct: 327 SLTKLQRLFFANNKVSD----VSSLANLTNINWLSAGHNQ----ISDLTPLANLTRITQL 378

Query: 243 TLDD 246
            L+D
Sbjct: 379 GLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 24/157 (15%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLS----KLKKLDLRGNLCNNSILSS---- 130
                 L  LDL+ N I+  A   GL +L+ L     ++  +     L   + L      
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 296

Query: 131 ------VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGL 184
                 ++ L +LT L L  N +          SL+ L+ L   +N++ +V        L
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNKVSDVS---SLANL 350

Query: 185 RKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN 221
             +  L      I D    L  + +   +  L L   
Sbjct: 351 TNINWLSAGHNQISD----LTPLANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 88.7 bits (218), Expect = 1e-19
 Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 27/290 (9%)

Query: 514 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 573
              R+  LD+S  N     P                       IPSS  N+ +L FL + 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNFLYIG 84

Query: 574 NNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 633
                             L +L +++ ++ G I   +  ++ L  L    N   G +P S
Sbjct: 85  GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144

Query: 634 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 693
           +S   +L G+  + N +SG IP   G+   L   +    +             +L  +D+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204

Query: 694 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 753
           S N + G     F      Q              G      +L  LDL  N + G++P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 754 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN-LHGL-IPSC 801
           +  L  L  LN++ NNL GE+P Q   L +  +   ++N  L G  +P+C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 34/292 (11%)

Query: 688 LQILDISDNNISG--SLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 744
           +  LD+S  N+     +PS    L  +  +++                 + L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 745 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
            ++G+IPD++  +  L  L+ ++N L G +P  +  L  L  +    N + G IP     
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--- 168

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
              + S++   +     +   +   P       +  +          A            
Sbjct: 169 ---YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQK 225

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
                  +     ++G    +  L+L +N + GT+P   + L+ + SL++S+N       
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN------- 278

Query: 925 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 976
                            NL G+IP+       F+ S+Y  N  LCG PLP C
Sbjct: 279 -----------------NLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.3 bits (186), Expect = 2e-15
 Identities = 62/293 (21%), Positives = 100/293 (34%), Gaps = 34/293 (11%)

Query: 635 SKCSSLKGLYLNNNNLSGK--IPRWLGNLKGLQHIVMPKNH-LEGPIPVEFCRLDSLQIL 691
           ++   +  L L+  NL     IP  L NL  L  + +   + L GPIP    +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 692 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 751
            I+  N+SG++P     +                   +  +  +LV +    N ++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 752 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY 811
           D     S+L        N              L  +DLS N L G     F +    +  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 871
           +   +          +S     +                              DL  N++
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGL------------------------------DLRNNRI 256

Query: 872 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 924
            G +P  +  L  + +LN+S NNL G IP    NL+  +    + NK     P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 63.6 bits (153), Expect = 3e-11
 Identities = 47/281 (16%), Positives = 90/281 (32%), Gaps = 13/281 (4%)

Query: 361 CLANTTSLRI--LDVSFNQLTGSISSSP-LVHLTSIEELRLSNNHFRIPVSLEPLFNHSK 417
           C  +T + R+  LD+S   L         L +L  +  L +   +  +      +   ++
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 418 LKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHI 477
           L      +  ++G I +  S          S ++      T P  +     L        
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDGN 159

Query: 478 KMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 537
           ++ G  P+     +     + +  + L G       +          N        +   
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 538 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL 597
           D     ++   +  A D        N+     LDL NN++ G +P  L      L  L++
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLT-QLKFLHSLNV 275

Query: 598 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCS 638
           S N+L G I  +  +L+         N  +   P  L  C+
Sbjct: 276 SFNNLCGEI-PQGGNLQRFDVSAYANNKCLCGSP--LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.1 bits (144), Expect = 3e-10
 Identities = 57/277 (20%), Positives = 91/277 (32%), Gaps = 5/277 (1%)

Query: 407 VSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQ 466
           V  +      ++   D     +        SL     L  L +          P  +   
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL 100

Query: 467 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN 526
            +L    ++H  + G  P++L +  T +   +  N +L+G     I S   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGN 159

Query: 527 NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 586
              G IP   G          IS N L G IP +F N+         N           +
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219

Query: 587 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 646
                         +       ++   +NL  L L  N   G +PQ L++   L  L ++
Sbjct: 220 DKNTQKIH---LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 647 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC 683
            NNL G+IP+  GNL+         N      P+  C
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 58/372 (15%), Positives = 96/372 (25%), Gaps = 74/372 (19%)

Query: 17  CLDHERFALLRLKHFFTDPYD----KGATDCCQ--WEGVECSNTTGRVIGLYLSETYSGE 70
           C   ++ ALL++K    +P         TDCC   W GV C   T               
Sbjct: 3   CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTY------------ 50

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSS 130
                        ++ +LDLS  N+                               I SS
Sbjct: 51  -------------RVNNLDLSGLNLPK--------------------------PYPIPSS 71

Query: 131 VARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSL 190
           +A L  L  L++                L+ L  L I    +         +    +   
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 191 DLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 250
                        + S+   P+L  +  + N  +  +  +    +             L 
Sbjct: 132 FSYNALSGTLPPSISSL---PNLVGITFDGNRISGAIPDSYGSFS------------KLF 176

Query: 251 ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIG 310
            S+  S   +   +     +       LS        S+     +  +            
Sbjct: 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRI 370
                L                 L QGL  L  L  L +  N+L G +P    N     +
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDV 295

Query: 371 LDVSFNQ-LTGS 381
              + N+ L GS
Sbjct: 296 SAYANNKCLCGS 307

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 57/276 (20%), Positives = 93/276 (33%), Gaps = 17/276 (6%)

Query: 129 SSVARLSSLTSLHLSHNILQGSID-AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKL 187
            +  +   + +L LS   L           +L  L  L I         +      L +L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 188 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
             L ++   +         +    +L TL    N  +   T    + +  NL  +T D +
Sbjct: 104 HYLYITHTNVSGAIP--DFLSQIKTLVTLDFSYNALSG--TLPPSISSLPNLVGITFDGN 159

Query: 248 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
            +  ++  S GS       L  S       L+G+  P F +L    +  +R  L      
Sbjct: 160 RISGAIPDSYGSFS----KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 308 IIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTS 367
           + G    + K        L  NS       +    +L  L + NN + G+LP  L     
Sbjct: 216 LFGSDKNTQKI------HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 368 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF 403
           L  L+VSFN L G I      +L   +    +NN  
Sbjct: 270 LHSLNVSFNNLCGEIPQGG--NLQRFDVSAYANNKC 303

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (156), Expect = 1e-11
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 22/294 (7%)

Query: 521 LDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 580
           LD++  N    +   +  +   ++ F    + +D  +   F     +Q +DLSN+ +   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEVS 61

Query: 581 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSL 640
               +   C  L+ LSL    L   I + +    NL  L L G     E        S  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 641 KGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 700
           +   LN +       + +          + + +L G                      S 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK---------------SD 166

Query: 701 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSY-NYLNGSIPDWIDGLSQ 759
                    ++  + LS +++        FF  + L  L LS    +       +  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 760 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNN 813
           L  L +     +G + +       L  L ++ ++   +      N    E +  
Sbjct: 227 LKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 9/277 (3%)

Query: 665 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ 724
           Q + +   +L   +         +       + +   L   F P  ++ + LS +++   
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 725 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL 784
              G    CS L  L L    L+  I + +   S L  LNL+  +   E  +Q    +  
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 785 QLLDLSDNNLHGLIPSCFDNTTLHESYNNN----SSPDKPFKTSFSISGPQGSVEKKILE 840
           +L +L+ +               H S        S   K  + S   +  +       L+
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 841 IFEFTTKNIAYAYQGRVLSLLAGLDLS-CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 899
           + +          +   L+ L  L LS C  ++     ++G +  ++TL +      GT+
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 900 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 936
            L    L H   L ++ +  +      + +     I+
Sbjct: 242 QLLKEALPH---LQINCSHFTTIARPTIGNKKNQEIW 275

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 6e-08
 Identities = 39/268 (14%), Positives = 96/268 (35%), Gaps = 10/268 (3%)

Query: 114 KKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEID 173
           + LDL G   +  +   +     + +     + +   +   E  S   ++ +D++++ I+
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIE 59

Query: 174 NVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQEL 233
              +        KL++L L G+ + D   ++ ++    +L  L+L   +  +       L
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSD--PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 234 HNFTNLEYLTLD--DSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEH 291
            + + L+ L L          +  ++  +  ++  L++SG   N   S       +    
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 292 LDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDN 351
           + +  +   +  +        +  L++LSLS        +      L  +  L+ L +  
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET---LLELGEIPTLKTLQVFG 234

Query: 352 NDLRGSLPWCLANTTSLRILDVSFNQLT 379
               G+L         L+I    F  + 
Sbjct: 235 IVPDGTLQLLKEALPHLQINCSHFTTIA 262

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 4e-06
 Identities = 51/288 (17%), Positives = 94/288 (32%), Gaps = 21/288 (7%)

Query: 87  SLDLSWNNIAGCAENEGLERLSRLSKLKKLDLR-GNLCNNSILSSVARLSSLTSLHLSHN 145
           +LDL+  N+         +   RL     +  R      +  L+       +  + LS++
Sbjct: 4   TLDLTGKNLHP-------DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 146 ILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS--RGYRGLRKLKSLDLSGVGIRDGNKL 203
           +++ S         S L+ L +    + +  V+       L +L     SG        L
Sbjct: 57  VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 204 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 263
           L S      LN                  +        L+    +L  S L ++    P+
Sbjct: 117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 176

Query: 264 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 323
           L +L +S   +      Q F     L+HL +      +  + L++    +P+LK L + G
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL--GEIPTLKTLQVFG 234

Query: 324 STLGTNSSRILDQGLCPLAH-LQELYIDNNDLRGSLPWCLANTTSLRI 370
                    + D  L  L   L  L I+ +         + N  +  I
Sbjct: 235 I--------VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 43/275 (15%), Positives = 89/275 (32%), Gaps = 17/275 (6%)

Query: 396 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 455
           L L+  +   P     L +   +  F    + ++  + E  S     +++ + LS++  +
Sbjct: 5   LDLTGKNLH-PDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPF---RVQHMDLSNSVIE 59

Query: 456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSH 515
             T    L    +L+   L  +++     N  L  N+ L  L L   S    F L     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYF-------NISMNALDGSIPSSFGNVIFLQ 568
              R  +++ +         +   +  +              N     + +       L 
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 569 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN-NSLKGHIFSRIFSLRNLRWLLLEGNHFV 627
            LDLS++ +              L+ LSLS    +       +  +  L+ L + G    
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPD 238

Query: 628 GEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 662
           G +         L+   +N ++ +      +GN K
Sbjct: 239 GTLQLLKEALPHLQ---INCSHFTTIARPTIGNKK 270

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 35/255 (13%), Positives = 75/255 (29%), Gaps = 12/255 (4%)

Query: 473 ELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHI 532
           +L+   +  +    LL               +  P      S  R++ +D+SN+  +   
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIA--FRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVST 62

Query: 533 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL-SNNKLTGEIPDHLAMCCVN 591
              I      L   ++    L   I ++      L  L+L   +  +      L   C  
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 592 LEFLSLSNNSLKGHIFSRIFSLRNLRW-------LLLEGNHFVGEIPQSLSKCSSLKGLY 644
           L+ L+LS          ++                  +               + +    
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 645 LNNNNLSGKIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLP 703
            ++  L     +    L  LQH+ + +   +     +E   + +L+ L +      G+L 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 704 SCFYPLSIKQVHLSK 718
                L   Q++ S 
Sbjct: 243 LLKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 45/218 (20%), Positives = 83/218 (38%), Gaps = 10/218 (4%)

Query: 58  VIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLD 117
           VI      ++  +    + S F    +++ +DLS + I     +     LS+ SKL+ L 
Sbjct: 25  VIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNSVIEV---STLHGILSQCSKLQNLS 77

Query: 118 LRGNLCNNSILSSVARLSSLTSLHLSHNI-LQGSIDAKEFDSLSNLEELDINDNEIDNVE 176
           L G   ++ I++++A+ S+L  L+LS               S S L+EL+++       +
Sbjct: 78  LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 137

Query: 177 VSRGY--RGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELH 234
             +         +  L+LSG         L ++            S++        QE  
Sbjct: 138 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 197

Query: 235 NFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGC 272
               L++L+L      I          P+LK L + G 
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 8e-11
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 7/208 (3%)

Query: 588 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 647
              +   ++    +L   +   +   ++   L L  N        +L   + L  L L+ 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 648 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY 707
             L+         L  L  + +  N L+    +         + D+S N ++        
Sbjct: 65  AELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPLGALR 121

Query: 708 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 767
            L   Q    K      L  G       L  L L+ N L       ++GL  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 768 NNLEGEVPIQLCRLNQLQLLDLSDNNLH 795
           N+L   +P      + L    L  N   
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 14/213 (6%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             +S + ++     L  ++P  +      + L+L+ N L       L    +L  L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 792 NNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 850
             L  L            +  +N          +            ++  +     + + 
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124

Query: 851 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 910
              +  +           N+L    P  +    +++ L+L++NNLT       + L +++
Sbjct: 125 ELQELYL---------KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 911 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 943
           +L L  N L   IP+     + L    +  N  
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKL 577
              ++    N    +P ++          ++S N L     ++      L  L+L     
Sbjct: 12  HLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-- 65

Query: 578 TGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKC 637
             E+        + +      +++    +     +L  L  L +  N        +L   
Sbjct: 66  --ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 638 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 697
             L+ LYL  N L    P  L     L+ + +  N+L          L++L  L + +N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 698 ISGSLPSCFYPLSIKQVHLSKNMLH 722
           +       F    +    L  N   
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
            +P  L K      L+L+ N L       L     L  + +  +  E         L  L
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQVDGTLPVL 79

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
             LD+S N +           ++  + +S N L   L  G       L  L L  N L  
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKT 138

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 807
             P  +    +L  L+LA+NNL       L  L  L  L L +N+L+ +    F +  L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 8e-05
 Identities = 29/188 (15%), Positives = 50/188 (26%), Gaps = 8/188 (4%)

Query: 510 LPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQF 569
           LP    K    L +S N         +      L   N     LD +  +       L  
Sbjct: 25  LPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLN-----LDRAELTKLQVDGTLPV 78

Query: 570 LDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           L   +          L    +    +   + +    +             L    + +  
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138

Query: 630 IPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
           +P  L   +          NNL+      L  L+ L  +++ +N L   IP  F     L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL 197

Query: 689 QILDISDN 696
               +  N
Sbjct: 198 PFAFLHGN 205

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (150), Expect = 1e-10
 Identities = 63/446 (14%), Positives = 117/446 (26%), Gaps = 33/446 (7%)

Query: 518 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLS 573
           ++ LD+           E+  +L       +    L       I S+      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 574 NNKLTGE----IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGE 629
           +N+L       +   L      ++ LSL N  L G     + S       L E +     
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123

Query: 630 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 689
           +  +  +      L         ++     +    + +            +     D  +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183

Query: 690 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 749
                        P     L ++   ++ +                 + L  +     G 
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243

Query: 750 IPDWIDGLSQLSHLNL-------AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 802
                  L   S L               G++   L     L+ L L+ N L        
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303

Query: 803 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQG------- 855
             T L       S   K    + +      SV  +   + E    N      G       
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363

Query: 856 --RVLSLLAGLDLSCNKL----VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS----- 904
             +  S+L  L L+   +       +   +     ++ L+LS+N L     L        
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 905 NLRHIESLDLSYNKLSGKIPRQLVDL 930
               +E L L     S ++  +L  L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (149), Expect = 2e-10
 Identities = 55/451 (12%), Positives = 120/451 (26%), Gaps = 22/451 (4%)

Query: 365 TTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR---IPVSLEPLFNHSKLKIF 421
           +  ++ LD+   +L+ +  +  L  L   + +RL +              L  +  L   
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 422 DAKNNEINGEINESHS---LTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIK 478
           + ++NE+             TP  +++ LSL +                 L         
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL------PTL 114

Query: 479 MIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 538
                 + LL +         + D      +L +              +     P     
Sbjct: 115 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 174

Query: 539 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 598
            + +       +  L   +  S   +  L+                +     +L  L+L 
Sbjct: 175 TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALG 234

Query: 599 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWL 658
           +N L     + +          L           +       + L    +     +    
Sbjct: 235 SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 294

Query: 659 GNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 718
              +G + +          +   + +  S      S  +   +       L I      +
Sbjct: 295 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LE 353

Query: 719 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGEV 774
           +    +L +G     S L  L L+   ++     S+   +     L  L+L++N L    
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 775 PIQLCR-----LNQLQLLDLSDNNLHGLIPS 800
            +QL          L+ L L D      +  
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 8e-09
 Identities = 56/464 (12%), Positives = 135/464 (29%), Gaps = 30/464 (6%)

Query: 161 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD--GNKLLQSMGSFPSLNTLHL 218
           +++ LDI   E+ +   +     L++ + + L   G+ +     +  ++   P+L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 219 ESNNFT---ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVN 275
            SN                    ++ L+L +  L  +    + S   +L  L       N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 276 GVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILD 335
            +         + L     R  ++ L    L        +    +       T S+  ++
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 336 QGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEE 395
           +    +    +   D+     +L       TS    D+     + +      +    + +
Sbjct: 183 EAGVRVLC--QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 396 LRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGD 455
           + ++     +      L      +         +         + K    + +   + G 
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 456 SVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV--------NDSLAGP 507
            +     L    +L+   +          +       +  FL  +        +  +   
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 508 FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL---PSLVYFNISMNALDGSIPSSFGNV 564
            +        LR L +++ +        +   L    SL   ++S N L  +        
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 565 IF-----LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK 603
           +      L+ L L +   + E+ D        L+ L     SL+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDR-------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 5e-08
 Identities = 54/462 (11%), Positives = 118/462 (25%), Gaps = 30/462 (6%)

Query: 315 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRG----SLPWCLANTTSLRI 370
            ++ L +    L   S     + L  L   Q + +D+  L       +   L    +L  
Sbjct: 3   DIQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 371 LDVSFNQLTG----SISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           L++  N+L       +          I++L L N                 +     +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT--------GAGCGVLSSTLRTL 111

Query: 427 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 486
               E++ S +L     L+ L               L +      +      ++   P++
Sbjct: 112 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 171

Query: 487 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 546
                +  +        L    +      + L+       +        I     SL   
Sbjct: 172 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 231

Query: 547 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 606
            +  N L     +     +      L    +            +     +  +       
Sbjct: 232 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 291

Query: 607 FSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQH 666
            + +                       +  CS        ++  S            + +
Sbjct: 292 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA--ACCSHFSSVLAQNRFLLELQISN 349

Query: 667 IVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG----SLPSCFYPL-SIKQVHLSKNML 721
             +    +             L++L ++D ++S     SL +      S++++ LS N L
Sbjct: 350 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409

Query: 722 HGQ----LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 759
                  L E        L  L L   Y +  + D +  L +
Sbjct: 410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 52/448 (11%), Positives = 118/448 (26%), Gaps = 23/448 (5%)

Query: 238 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLS---GQGFPHFKSLEHLDM 294
           +++ L +    L  +    +  +    + + +  C +                +L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 295 RFARI--ALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNN 352
           R   +        LQ +      ++ LSL    L      +L   L  L  LQEL++ +N
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 353 DLRGSLPW-CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP 411
            L  +            +           S+S++    L S+   +       +  +   
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 412 LFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKE 471
                 L      +      +            + L        S+       ++     
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 472 AELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 531
                  ++            +          L    R      +     +   +     
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 532 IPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD-------- 583
           +   + +    L    +   +   +  S F +V+      L        + D        
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 584 HLAMCCVNLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSK--- 636
            L      L  L L++  +       + + + +  +LR L L  N         L +   
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 637 --CSSLKGLYLNNNNLSGKIPRWLGNLK 662
                L+ L L +   S ++   L  L+
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (108), Expect = 1e-05
 Identities = 55/451 (12%), Positives = 108/451 (23%), Gaps = 27/451 (5%)

Query: 187 LKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT--QELHNFTNLEYLTL 244
           ++SLD+    + D  +  + +        + L+    T          L     L  L L
Sbjct: 4   IQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 245 DDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIA 300
             + L       +LQ + +    ++ LS+  C + G   G      ++L  L        
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS-- 120

Query: 301 LNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPW 360
            +        + +                    L    C           +         
Sbjct: 121 -DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 361 CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 420
            +       +     +      +        + +  R          SL  L   S    
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 421 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMI 480
                    G ++ S  L   +  +    +   GD     +      EL  A        
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 481 GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI- 539
                  L           V             S    +   +       +   + G   
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 359

Query: 540 --------LPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGE----IPD 583
                      L    ++   +      S+ ++      L+ LDLSNN L       + +
Sbjct: 360 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419

Query: 584 HLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR 614
            +      LE L L +      +  R+ +L 
Sbjct: 420 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 6e-05
 Identities = 62/463 (13%), Positives = 128/463 (27%), Gaps = 42/463 (9%)

Query: 263 SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE---SMPSLKYL 319
            +++L +   E++     +  P  +  + + +    +    +  + I       P+L  L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL--TEARCKDISSALRVNPALAEL 60

Query: 320 SLSGSTLGTNSSRILDQGL-CPLAHLQELYIDNNDLR----GSLPWCLANTTSLRILDVS 374
           +L  + LG      + QGL  P   +Q+L + N  L     G L   L    +L+ L +S
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 375 FNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINE 434
            N L  +        L   +            +S       + +        E+    N+
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 435 SHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKL 494
            +    +   + L  S    +++            ++               L  N    
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 240

Query: 495 EFL-YLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNAL 553
             +  L    L    RL                +    +  +      SL    +     
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300

Query: 554 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA--------MCCVNLEFLSLSNNSLKGH 605
                +       L+ L + +   T     H +        +  + +    L +  ++  
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360

Query: 606 IFSRIFSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 661
                     LR L L            +  +L    SL+ L L+NN L       L  +
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL--V 418

Query: 662 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS 704
           + ++                      L+ L + D   S  +  
Sbjct: 419 ESVRQ-----------------PGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 311 ESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA-----NT 365
           +    L+ L L+   +  +S   L   L     L+EL + NN L  +    L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 366 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 405
             L  L +     +  +          ++ L       R+
Sbjct: 426 CLLEQLVLYDIYWSEEMED-------RLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 6e-04
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 11/94 (11%)

Query: 85  LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGN----LCNNSILSSVARLSSLTSL 140
           ++SLD+    +   ++    E L  L + + + L            I S++    +L  L
Sbjct: 4   IQSLDIQCEEL---SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 141 HLSHNILQGSIDAKEFDSLS----NLEELDINDN 170
           +L  N L           L      +++L + + 
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 71  YWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSS 130
              L   L  P   L  L L+  +++  + +     L     L++LDL  N   ++ +  
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 131 VAR-----LSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDI 167
           +          L  L L        ++ +      +   L +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 0.001
 Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 4/110 (3%)

Query: 709 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLN 764
           L I+ + +    L                 + L    L       I   +     L+ LN
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 765 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNN 814
           L  N L       + +  Q     +   +L     +      L  +    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL 111

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.002
 Identities = 41/433 (9%), Positives = 90/433 (20%), Gaps = 21/433 (4%)

Query: 542 SLVYFNISMNAL-DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC---CVNLEFLSL 597
            +   +I    L D         +   Q + L +  LT      ++        L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 598 SNNSLKGHIFSRIFSL-----RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 652
            +N L       +          ++ L L+     G     LS            +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL--- 119

Query: 653 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIK 712
                      L    +                 S    +   + +          +S  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 179

Query: 713 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 772
            ++ +   +  Q  + +     +L          N      I             +N  G
Sbjct: 180 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239

Query: 773 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 832
           +V +       L                                  K    + +  G +G
Sbjct: 240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 299

Query: 833 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 892
           +       +         +       +       S          +     +I    L  
Sbjct: 300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-----LAQNRFLLELQISNNRLED 354

Query: 893 NNLTGTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSGKIP 948
             +             +  L L+   +S      +   L+  ++L    ++ N L     
Sbjct: 355 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 414

Query: 949 EWTAQFATFNKSS 961
               +        
Sbjct: 415 LQLVESVRQPGCL 427

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 136 SLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNV---EVSRGYRGLRKLKSLDL 192
            + SL +    L  +  A+    L   + + ++D  +      ++S   R    L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 193 SGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 223
               +  G+  +  +       +  ++  + 
Sbjct: 63  RSNEL--GDVGVHCVLQGLQTPSCKIQKLSL 91

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-07
 Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 8/138 (5%)

Query: 559 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 618
           + + N +  + LDL   K+   I  +L       + +  S+N +          LR L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67

Query: 619 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG----KIPRWLGNLKGLQHIVMPKNHL 674
           LL+  N               L  L L NN+L           L +L  L  +  P  + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 675 EGPIPVEFCRLDSLQILD 692
           +        ++  +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 3/127 (2%)

Query: 877  PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 936
             Q  N  R + L+L    +   I    + L   +++D S N++          L  L   
Sbjct: 12   AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 937  IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLATMSEASTSNEGDDNLI 996
            +V  N +               +     N  +    L    SL +++          N  
Sbjct: 69   LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 997  DMDSFFI 1003
                + I
Sbjct: 129  HYRLYVI 135

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 17/194 (8%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             +  +  +L    +  ++    + L+ +  +   +++++    IQ   L  +  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTT----- 846
           N L  + P            + N   D                   I +I          
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 847 -----KNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 901
                 N                    +  +  I P +  LT++Q L LS N+++  +  
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLR- 194

Query: 902 TFSNLRHIESLDLS 915
             + L++++ L+L 
Sbjct: 195 ALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.003
 Identities = 34/209 (16%), Positives = 64/209 (30%), Gaps = 33/209 (15%)

Query: 532 IPVEIGDILP-----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLA 586
           +P  I  I         +  N+   ++  ++  +   +  +  +  +N+ +         
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQGIQ-- 65

Query: 587 MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL------------------LLEGNHFVG 628
               N+  L L+ N L               +L                   L   H   
Sbjct: 66  -YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSL 688
                L     L+ LYL NN ++         L  L  + +  N +   +P     L  L
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKL 180

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLS 717
           Q L +S N+IS  L +     ++  + L 
Sbjct: 181 QNLYLSKNHIS-DLRALAGLKNLDVLELF 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 3e-07
 Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 20/318 (6%)

Query: 509 RLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQ 568
           RL     ++   L+++N          + ++ P L     S N+L   +P    ++  L 
Sbjct: 31  RLRDCLDRQAHELELNNLGLS-----SLPELPPHLESLVASCNSLT-ELPELPQSLKSLL 84

Query: 569 FLDLSNNKLTGEIP----------DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 618
             + +   L+   P              +  +         +     +        +L +
Sbjct: 85  VDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 619 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 678
           +    N              +      N+      +P  L ++    +I+     L+   
Sbjct: 145 IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 204

Query: 679 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 738
            +     D+  +  + D   S    +           L +++    + E  F   S L  
Sbjct: 205 FLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 264

Query: 739 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 798
                N  +  I    D    L  LN+++N L  E+P    RL   + L  S N+L  + 
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLAEVP 320

Query: 799 PSCFDNTTLHESYNNNSS 816
               +   LH  YN    
Sbjct: 321 ELPQNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 10/159 (6%)

Query: 459 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL 518
              FL   +       +   +        + +N   +   L            I S    
Sbjct: 202 NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 261

Query: 519 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 578
              ++   N   +    + D+ PSL   N+S N L   +P+       L+ L  S N L 
Sbjct: 262 LPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA 317

Query: 579 GEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 617
            E+P+       NL+ L +  N L+        S+ +LR
Sbjct: 318 -EVPELPQ----NLKQLHVEYNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 50/330 (15%), Positives = 94/330 (28%), Gaps = 17/330 (5%)

Query: 339 CPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRL 398
           C      EL ++N  L  SLP    +   L  L  S N LT        +    ++   L
Sbjct: 35  CLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNL 90

Query: 399 SNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVT 458
                  P+      ++++L+      N    +I +  + + K                 
Sbjct: 91  KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNN 150

Query: 459 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLP---IHSH 515
             + L     L      +           L  + +               +        +
Sbjct: 151 QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIY 210

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNN 575
                L    +       + + D   + +              + F  +  L       N
Sbjct: 211 ADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLN 270

Query: 576 KLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 635
             + EI         +LE L++SNN L             L  L+   NH   E+P+   
Sbjct: 271 ASSNEIRSLC-DLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHL-AEVPELP- 323

Query: 636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 665
              +LK L++  N L  + P    +++ L+
Sbjct: 324 --QNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 56/337 (16%), Positives = 102/337 (30%), Gaps = 32/337 (9%)

Query: 614 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 673
           R    L L        +P+       L+ L  + N+L+ ++P    +LK    +++  N+
Sbjct: 38  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLT-ELPELPQSLK---SLLVDNNN 89

Query: 674 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC 733
           L+         L  L       NN    LP       +K + +  N L            
Sbjct: 90  LKA-----LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEF 144

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
                          +  + +  L  L  L   + +      +    L+   ++  ++  
Sbjct: 145 ----------IAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNIL 194

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
                       T   + NN          S      + +    + E+ +  T       
Sbjct: 195 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 254

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
               LS L       N     I         ++ LN+S+N L   +P     L     L 
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LI 310

Query: 914 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 950
            S+N L+ ++P    +L  L    V YN L  + P+ 
Sbjct: 311 ASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 8e-06
 Identities = 30/164 (18%), Positives = 53/164 (32%), Gaps = 14/164 (8%)

Query: 436 HSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE 495
             LT  +   +L  +            +   +     EL       +    +    ++L 
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 496 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG 555
                 ++ +   R        L  L+VSNN        E+  + P L     S N L  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-----ELPALPPRLERLIASFNHL-A 317

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
            +P    N   L+ L +  N L  E PD       ++E L +++
Sbjct: 318 EVPELPQN---LKQLHVEYNPLR-EFPDIPE----SVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 48/333 (14%), Positives = 85/333 (25%), Gaps = 26/333 (7%)

Query: 84  QLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLS 143
           Q   L+L+   ++   E            L+ L        NS+        SL SL + 
Sbjct: 39  QAHELELNNLGLSSLPEL--------PPHLESLVAS----CNSLTELPELPQSLKSLLVD 86

Query: 144 HNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 203
           +N L+   D         +    +                +       L  +        
Sbjct: 87  NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 204 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPS 263
             +          +L                       L    +  +I          P 
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYA-DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 205

Query: 264 LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSG 323
           L  +      +  +          ++    +        +     + E++ S        
Sbjct: 206 LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 265

Query: 324 STLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSIS 383
                 SS  +         L+EL + NN L   LP        L  L  SFN L   + 
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVP 320

Query: 384 SSPLVHLTSIEELRLSNNHFR----IPVSLEPL 412
             P     ++++L +  N  R    IP S+E L
Sbjct: 321 ELP----QNLKQLHVEYNPLREFPDIPESVEDL 349

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 33/163 (20%), Positives = 57/163 (34%), Gaps = 3/163 (1%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 615
            IP           L L++N+L     D L     +L  L L  N L G   +      +
Sbjct: 22  EIPRDIPLH--TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 616 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
           ++ L L  N       +       LK L L +N +S  +P    +L  L  + +  N   
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 676 GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 718
               + +   + L+   ++        PS    + IK +  S+
Sbjct: 140 CNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPVEFCRLDS 687
           EIP+ +        L LN+N L       L G L  L  + + +N L G  P  F     
Sbjct: 22  EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 688 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 747
           +Q L + +N I       F  L   +     +     +  G+F + +SL +L+L+ N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 748 GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNL 794
            +          L   +L         P    ++  +Q+ DL  +  
Sbjct: 140 CNCHLAW-FAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 32/182 (17%), Positives = 61/182 (33%), Gaps = 6/182 (3%)

Query: 635 SKCS-SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILD 692
           + C      +      L  +IPR +        +++  N L              L  L+
Sbjct: 4   AMCHCEGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLE 60

Query: 693 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD 752
           +  N ++G  P+ F   S  Q          ++    F     L TL+L  N ++  +P 
Sbjct: 61  LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

Query: 753 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 812
             + L+ L+ LNLA N       +        +   L+        PS   +  + +  +
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK-KSLNGGAARCGAPSKVRDVQIKDLPH 179

Query: 813 NN 814
           + 
Sbjct: 180 SE 181

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 31/237 (13%), Positives = 74/237 (31%), Gaps = 26/237 (10%)

Query: 363 ANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 422
               +   +    + +T +++ +    L  I  L           ++E +   + L   +
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 423 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGE 482
            K+N+I       +          L+  +    S    K +     L+  +   +     
Sbjct: 70  LKDNQITDLAPLKN----------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 483 FPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 542
                L   + L+ LYL  + +     L   ++ +   +  +  +    +          
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL-----SK 174

Query: 543 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 599
           L       N +    P    ++  L  + L NN+++   P        NL  ++L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 9e-06
 Identities = 35/244 (14%), Positives = 79/244 (32%), Gaps = 33/244 (13%)

Query: 157 DSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTL 216
            +L+N  ++    + + +         L  + +L   G G+      ++ +    +L  L
Sbjct: 16  PALANAIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT----IEGVQYLNNLIGL 68

Query: 217 HLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNG 276
            L+ N             +   L+ LT               S    L+++         
Sbjct: 69  ELKDNQI----------TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118

Query: 277 VLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQ 336
           +          +L+ L +   +I   +    +      S+             +      
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN-----------AQVSDLT 167

Query: 337 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 396
            L  L+ L  L  D+N +    P  LA+  +L  + +  NQ++      PL + +++  +
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIV 222

Query: 397 RLSN 400
            L+N
Sbjct: 223 TLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 3e-05
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 15/202 (7%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             ++ + +    + +  ++      L  ++ L+     +     +Q   LN L  L+L D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--YLNNLIGLELKD 72

Query: 792 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAY 851
           N +  L P            + N   +                  +I ++      +   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 852 AYQGRVLSLLAGLDLSCNKLVGHI---------PPQIGNLTRIQTLNLSHNNLTGTIPLT 902
                +  +     L+    + ++            + NL+++ TL    N ++   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 903 FSNLRHIESLDLSYNKLSGKIP 924
            ++L ++  + L  N++S   P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 18/210 (8%)

Query: 715 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 774
              K+ +   +   T  +   + TL      +     + +  L+ L  L L  N +    
Sbjct: 25  AAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 775 PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 834
           P++         L  +       I       TL  +    +        S          
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 835 EKKILEIFEFTTKNIAYAYQGRVLSL---------LAGLDLSCNKLVGHIPPQIGNLTRI 885
           +   +      T     +     +S          L  L    NK+    P  + +L  +
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNL 197

Query: 886 QTLNLSHNNLTGTIPLTFSNLRHIESLDLS 915
             ++L +N ++   PL  +N  ++  + L+
Sbjct: 198 IEVHLKNNQISDVSPL--ANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 29/218 (13%), Positives = 73/218 (33%), Gaps = 15/218 (6%)

Query: 110 LSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDIND 169
           L+   K+    +  N +   + A L  +T+L      +      +    L+NL  L++ D
Sbjct: 18  LANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKD 72

Query: 170 NEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH-----LESNNFT 224
           N+I ++   +    + +L+        +     L        +   +         +N  
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 225 ATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFP 284
                  ++ N + L  LT        +   S  +   +L  L+    + N +       
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 285 HFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLS 322
              +L  + ++  +I+  +        +  +L  ++L+
Sbjct: 193 SLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLT 225

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-06
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 3/114 (2%)

Query: 861 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKL 919
            +GL  + +  +      +     +  L + +      +       L  + +L +  + L
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 920 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 973
               P        L+   +++N L   +   T Q  +  +    GNP  C   L
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCAL 121

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 27/175 (15%), Positives = 48/175 (27%), Gaps = 26/175 (14%)

Query: 588 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 647
           C      L  + +                            +    L    +L  LY+ N
Sbjct: 6   CPHGSSGLRCTRDGAL-------------------------DSLHHLPGAENLTELYIEN 40

Query: 648 NNLSGKIPR-WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 706
                 +    L  L  L+++ + K+ L    P  F     L  L++S N +        
Sbjct: 41  QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100

Query: 707 YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 761
             LS++++ LS N LH                  +    L       +  +   S
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 3/148 (2%)

Query: 567 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHF 626
              L  + +    +   HL       E    +   L+      +  L  LR L +  +  
Sbjct: 10  SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 627 VGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRL 685
               P +      L  L L+ N L   +         LQ +V+  N L     +    R 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 686 DSLQILDISDNNISGSLPSCFYPLSIKQ 713
           +   +  + +  +          +    
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 17/130 (13%), Positives = 34/130 (26%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 615
                      L  L + N +    +          L  L++  + L+            
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 616 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
           L  L L  N       +++   S  + +   N        RWL   +      +P+  L+
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141

Query: 676 GPIPVEFCRL 685
                    +
Sbjct: 142 CHGQGPLAHM 151

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 7/124 (5%)

Query: 643 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSL 702
           L+L + +L+  +   L  L  + H+ +  N L    P     L  L++L  SDN +  ++
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALE-NV 58

Query: 703 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL---NGSIPDWIDGLSQ 759
                   ++++ L  N L          +C  LV L+L  N L    G      + L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 760 LSHL 763
           +S +
Sbjct: 119 VSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 7e-06
 Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 88  LDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNIL 147
           L L+  ++        L  L +L  +  LDL     +N + +    L++L  L +     
Sbjct: 3   LHLAHKDL------TVLCHLEQLLLVTHLDLS----HNRLRALPPALAALRCLEVLQASD 52

Query: 148 QGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 207
               +     +L  L+EL + +N +      +      +L  L+L G  +     + + +
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 208 GS-FPSLNTL 216
               PS++++
Sbjct: 113 AEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 6/110 (5%)

Query: 689 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 748
           ++L ++  +++  L      L +  + LS N L              L  L  S N L  
Sbjct: 1   RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALEN 57

Query: 749 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGL 797
                     Q   L L +N L+    IQ L    +L LL+L  N+L   
Sbjct: 58  VDGVANLPRLQ--ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%)

Query: 547 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI 606
           +++   L  ++      ++ +  LDLS+N+L    P   A+ C+ +       +      
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL----QASDNALEN 57

Query: 607 FSRIFSLRNLRWLLLEGNHFVG-EIPQSLSKCSSLKGLYLNNNNLSGK---IPRWLGNLK 662
              + +L  L+ LLL  N        Q L  C  L  L L  N+L  +     R    L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 663 GLQHIV 668
            +  I+
Sbjct: 118 SVSSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 26/114 (22%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 79  FTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLT 138
                 +  LDLS N +           L+ L  L+ L    +      +  VA L  L 
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPPA-----LAALRCLEVLQ--ASDNALENVDGVANLPRLQ 68

Query: 139 SLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGY--RGLRKLKSL 190
            L L +N LQ S   +   S   L  L++  N +   E  +      L  + S+
Sbjct: 69  ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 38/154 (24%)

Query: 763 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFK 822
           L+LAH +L   V   L +L  +  LDLS N L  L P+      L     ++++ +    
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 823 TSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGN 881
            +      +                                L L  N+L      Q + +
Sbjct: 61  VANLPRLQE--------------------------------LLLCNNRLQQSAAIQPLVS 88

Query: 882 LTRIQTLNLSHNNLT---GTIPLTFSNLRHIESL 912
             R+  LNL  N+L    G        L  + S+
Sbjct: 89  CPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 24/105 (22%)

Query: 864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP---------------------LT 902
           L L+   L   +   +  L  +  L+LSHN L    P                       
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 903 FSNLRHIESLDLSYNKL-SGKIPRQLVDLNTLAIFIVAYNNLSGK 946
            +NL  ++ L L  N+L      + LV    L +  +  N+L  +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 10/132 (7%)

Query: 188 KSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDS 247
           + L L+   +      L  +     +  L L  N   A             L  L +  +
Sbjct: 1   RVLHLAHKDLTV----LCHLEQLLLVTHLDLSHNRLRALPP------ALAALRCLEVLQA 50

Query: 248 SLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQ 307
           S +        +  P L+ L +    +    + Q       L  L+++   +       +
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

Query: 308 IIGESMPSLKYL 319
            + E +PS+  +
Sbjct: 111 RLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 511 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 570
            +     +  LD+S+N  +   P     +        +  +           N+  LQ L
Sbjct: 15  HLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNALENVDGVANLPRLQEL 70

Query: 571 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKG 604
            L NN+L         + C  L  L+L  NSL  
Sbjct: 71  LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 48/346 (13%), Positives = 97/346 (28%), Gaps = 47/346 (13%)

Query: 611 FSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 668
           FS+  ++L+   +        +   L +  S+K + L+ N +  +  RWL          
Sbjct: 3   FSIEGKSLKLDAITTED-EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN------- 54

Query: 669 MPKNHLEGPIPVEFCRLDSLQILDISDN---NISGSLPSCFYPLSIKQVHLSKNMLHGQL 725
                              L+I + SD     +   +P     L    +   K       
Sbjct: 55  -------------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101

Query: 726 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ 785
                      +   LS +     +    +GL   +   +A    E  V  +      L+
Sbjct: 102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 161

Query: 786 LLDLSDNNL--------HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKK 837
            +    N L             S     T+    N              ++  Q      
Sbjct: 162 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 221

Query: 838 ILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN------LTRIQTLNLS 891
           + +       + A A   +    L  L L+   L       + +         +QTL L 
Sbjct: 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 281

Query: 892 HNNLTGTIPLT-----FSNLRHIESLDLSYNKLS--GKIPRQLVDL 930
           +N +      T        +  +  L+L+ N+ S    +  ++ ++
Sbjct: 282 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 52/339 (15%), Positives = 106/339 (31%), Gaps = 20/339 (5%)

Query: 288 SLEHLDMRFARIALN--TSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQ 345
           S+E   ++   I      S   ++     S+K + LSG+T+GT ++R L + +     L+
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62

Query: 346 ELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRI 405
                +                L    +   +L  ++  S      + +E  +       
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-TVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 406 PVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYH 465
           P+    L N+       AK      E+  +        L+S+    N  ++ +  ++   
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 466 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 525
               +      +   G  P             +L+ + LA    L +   +   F  + +
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEG---------IEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232

Query: 526 NNFQGHIPVEIGDILPSLVYFNISMNALDGSI-PSSFGNVIFLQFLDLSNNKLTGEIPDH 584
           +     +          L    +S       +   S    I LQ L L  N++  +    
Sbjct: 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292

Query: 585 LAMC----CVNLEFLSLSNNSLK--GHIFSRIFSLRNLR 617
           L         +L FL L+ N       +   I  + + R
Sbjct: 293 LKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.2 bits (92), Expect = 9e-04
 Identities = 45/313 (14%), Positives = 90/313 (28%), Gaps = 15/313 (4%)

Query: 106 RLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQG---SIDAKEFDSLSNL 162
           R S   K  KLD        S+ + +    S+  + LS N +        ++   S  +L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 163 EELDINDNEIDNV--EVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 220
           E  + +D     V  E+    R L +          +R  +         P ++ L   +
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 221 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 280
                 L                L + +++     +            +    +      
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181

Query: 281 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCP 340
                      +     R       L         LK L L  +T     S  L   L  
Sbjct: 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 341 LAHLQELYIDNNDLRGSLPWCLANT------TSLRILDVSFNQLTG----SISSSPLVHL 390
             +L+EL +++  L       + +         L+ L + +N++      ++ +     +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 391 TSIEELRLSNNHF 403
             +  L L+ N F
Sbjct: 302 PDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 38/331 (11%), Positives = 92/331 (27%), Gaps = 34/331 (10%)

Query: 516 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLD 571
           K L+   ++  + +    V +     S+    +S N +       +  +  +   L+  +
Sbjct: 8   KSLKLDAITTEDEKSVFAVLLE--DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 572 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK---GHIFSRIFSLRNLRWLLLEGNHFVG 628
            S+      + D +      L    L    L        +   + +      L  +  + 
Sbjct: 66  FSDIFTG-RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 629 EIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC----- 683
            +    +      G  +        + +   N   L+ I+  +N LE     E+      
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 684 --------RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSS 735
                    + +    +  ++ +   L  C     +     +   L          +  +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 244

Query: 736 LVTLDLSYNYLNGSIPDWI------DGLSQLSHLNLAHNNLEGEVPIQLC-----RLNQL 784
           L  L L+   L+      +           L  L L +N +E +    L      ++  L
Sbjct: 245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304

Query: 785 QLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 815
             L+L+ N          +   +  +     
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 33/219 (15%), Positives = 68/219 (31%), Gaps = 7/219 (3%)

Query: 556 SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRN 615
            IPS          L     KL        +      +     N+ L+        +L  
Sbjct: 22  EIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 79

Query: 616 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 675
           L  + +E  + +  I     +        L +N     +P         + ++  ++++ 
Sbjct: 80  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 139

Query: 676 GPIPVEFCRLDSLQI---LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 732
                    +        L ++ N I       F    + +++LS N    +L    F  
Sbjct: 140 IHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHG 199

Query: 733 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 771
            S  V LD+S   ++      ++ L +L   +    NL+
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 8/234 (3%)

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           S ++    ++ ++  +PS   P +  ++      L   +++G F     L  +++S N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDV 65

Query: 747 NGSIPDWIDGLSQLSHLNLAH--NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 804
              I   +       H       NNL    P     L  LQ L +S+  +  L      +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 805 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGL 864
           +      +   + +       S  G         L        +       ++       
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE---LN 182

Query: 865 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 918
               N L           +    L++S   +         NL+ + +      K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 6/234 (2%)

Query: 343 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNH 402
             +      + +   +P  L    +   L     +L   I          +E++ +S N 
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 64

Query: 403 FRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKF 462
               +  +   N  K           N       +      L+ L +S+     +     
Sbjct: 65  VLEVIEADVFSNLPK-LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 463 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLD 522
           ++   ++      +I +     N  +  + +   L+L  + +        +  +     +
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL-N 182

Query: 523 VSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 576
           +S+NN    +P ++       V  +IS   +         N+  L+     N K
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 23/200 (11%), Positives = 47/200 (23%), Gaps = 1/200 (0%)

Query: 734 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 793
            + + L      L         G   L  + ++ N++   +   +            +  
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 794 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 853
            + L  +      L        S     K    +       +  +          I    
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 854 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 913
              +      L L+ N +              +     +NNL       F        LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 914 LSYNKLSGKIPRQLVDLNTL 933
           +S  ++       L +L  L
Sbjct: 208 ISRTRIHSLPSYGLENLKKL 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 27/235 (11%), Positives = 56/235 (23%), Gaps = 7/235 (2%)

Query: 367 SLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNN 426
           S R+     +++T      P     +  ELR      R+ +          L+  +   N
Sbjct: 9   SNRVFLCQESKVT----EIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQN 63

Query: 427 EINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW 486
           ++   I            +     +N    +    F    +       +         + 
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 487 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 546
           +      L  +    +         +        L ++ N  Q                 
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT-QLDELN 182

Query: 547 NISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNS 601
               N L+      F        LD+S  ++   +P +       L   S  N  
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 33/192 (17%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 791
             +  +   L    +  ++      L Q++ L      ++    ++   LN L  ++ S+
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSN 71

Query: 792 NNLHGLIP-----------SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 840
           N L  + P              +         N ++       +  I+          L 
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 841 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 900
             E ++  I+       L+ L  L+ S N++    P  + NLT ++ L++S N ++    
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 189

Query: 901 LTFSNLRHIESL 912
           L  + L ++ESL
Sbjct: 190 L--AKLTNLESL 199

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 7/119 (5%)

Query: 687 SLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL 746
           S Q LD+        L +         ++   +M           N   L++L+LS N L
Sbjct: 23  SQQALDLKGLRSDPDLVAQNI---DVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRL 77

Query: 747 NG--SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 803
                +   +     L  LNL+ N L+ E  +   +  +L+ L L  N+L         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1056
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	100.0
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.93
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.92
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.9
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.88
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.87
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.86
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.82
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.66
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.62
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.15

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=0  Score=272.07  Aligned_cols=154  Identities=27%  Similarity=0.403  Sum_probs=97.8

Q ss_pred             CCCHHHHHHHHHHHHCCCCC----CCCCCCCCCC--CCCEEECCCC--CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             67799899998401018899----9999999633--3604637998--94299932665568743235556867879987
Q 001547           16 GCLDHERFALLRLKHFFTDP----YDKGATDCCQ--WEGVECSNTT--GRVIGLYLSETYSGEYWYLNASLFTPFQQLES   87 (1056)
Q Consensus        16 ~~~~~~~~~ll~~k~~~~~~----~~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~~~~~~~L~~   87 (1056)
                      .|+++||+|||+||+++.||    +|..++|||.  |+||+|+..+  +||+++|++++...+... .++.+.++++|++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~-lp~~l~~L~~L~~   80 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP-IPSSLANLPYLNF   80 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEE-CCGGGGGCTTCSE
T ss_pred             CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEECCCCCCCCCCC-CCHHHHCCCCCCC
T ss_conf             989899999999999779998677889999998894889697489994798899898998888887-9847846753352


Q ss_pred             EECCC-CCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEE
Q ss_conf             63899-98897544542100138999858847898689964010028999859956998466866921105999986686
Q 001547           88 LDLSW-NNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELD  166 (1056)
Q Consensus        88 L~Ls~-~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L~  166 (1056)
                      |+|++ |.+.+..+    ..++++++|++|++++|.+.+..+..+..+..|+++++++|.+.+.+|. .+.++++|++++
T Consensus        81 L~Ls~~N~l~g~iP----~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~  155 (313)
T d1ogqa_          81 LYIGGINNLVGPIP----PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGIT  155 (313)
T ss_dssp             EEEEEETTEESCCC----GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEE
T ss_pred             CCCCCCCCCCCCCC----CCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCH-HHCCCCCCCEEE
T ss_conf             02026543330024----3114542001102035643443322222011100111122455556851-220674000000


Q ss_pred             CCCCCCCCC
Q ss_conf             789978863
Q 001547          167 INDNEIDNV  175 (1056)
Q Consensus       167 Ls~n~l~~~  175 (1056)
                      +++|.+.+.
T Consensus       156 l~~n~l~~~  164 (313)
T d1ogqa_         156 FDGNRISGA  164 (313)
T ss_dssp             CCSSCCEEE
T ss_pred             CCCCCCCCC
T ss_conf             235533562

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.2e-45  Score=239.40  Aligned_cols=259  Identities=34%  Similarity=0.571  Sum_probs=218.2

Q ss_pred             CCCEEECCCCCCCC--CCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99499877986899--8972235999974898689-94558883000399988699831675755689877777404898
Q 001547          639 SLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVH  715 (1056)
Q Consensus       639 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~  715 (1056)
                      .++.|+++++.+.+  .+|..+++++.|++|++++ |.+.+.+|..+.++++|++|++++|++.+..             
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~-------------  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI-------------  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC-------------
T ss_pred             EEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC-------------
T ss_conf             9889989899888888798478467533520202654333002431145420011020356434433-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCC-CEEECCCCCC
Q ss_conf             478515332575534699986599853740775552433335888899858873644477000189998-8998527858
Q 001547          716 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQL-QLLDLSDNNL  794 (1056)
Q Consensus       716 l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l  794 (1056)
                                +. .+..+..|+.++++.|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|++
T Consensus       118 ----------~~-~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         118 ----------PD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------CG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------CC-CCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             ----------22-2220111001111224555568512206740000002355335620312144311232310224643


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCC
Q ss_conf             64478553566422234799999999754434579999602212103431035421011100003567377689813677
Q 001547          795 HGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH  874 (1056)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~  874 (1056)
                      ++..|..+....                                                      ...++++.+...+.
T Consensus       187 ~~~~~~~~~~l~------------------------------------------------------~~~l~l~~~~~~~~  212 (313)
T d1ogqa_         187 TGKIPPTFANLN------------------------------------------------------LAFVDLSRNMLEGD  212 (313)
T ss_dssp             EEECCGGGGGCC------------------------------------------------------CSEEECCSSEEEEC
T ss_pred             CCCCCCCCCCCC------------------------------------------------------CCCCCCCCCCCCCC
T ss_conf             533243322222------------------------------------------------------22333333433222


Q ss_pred             CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf             91100397768877687864854465235699999989853860753478121189878768735674623699765345
Q 001547          875 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF  954 (1056)
Q Consensus       875 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~  954 (1056)
                      +|..+..+++++.+++++|.+.+.+| .++.+++|+.|++++|+++|.+|..+..++.|++|++++|+++|.+|. ...+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCC-CCCC
T ss_conf             22222222221112222222222222-222455444444765706660876884799999897958835166898-6667


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88885566788788889998988
Q 001547          955 ATFNKSSYDGNPFLCGLPLPICR  977 (1056)
Q Consensus       955 ~~~~~~~~~~n~~~c~~~l~~c~  977 (1056)
                      ..++...+.+|+.+||.|+..|.
T Consensus       291 ~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         291 QRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             GGSCGGGTCSSSEEESTTSSCCC
T ss_pred             CCCCHHHHCCCCCCCCCCCCCCC
T ss_conf             99897886889500198988989

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.1e-38  Score=207.37  Aligned_cols=58  Identities=26%  Similarity=0.366  Sum_probs=23.9

Q ss_pred             CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf             876199855776556665000299998699776884867689722226788758975587444
Q 001547          342 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFR  404 (1056)
Q Consensus       342 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~  404 (1056)
                      .+|++|+++++.++..  +.+..+++|++|++++|.++ .+  ..++++++|++|++++|.+.
T Consensus        44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l--~~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DI--TPLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CC--GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCCCCCC--CCCCCCCCCCEEECCCCCCC-CC--CCCCCCCCCCCCCCCCCCCC
T ss_conf             7878998999898776--24245899998968188179-88--63347711010301343332

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=2.2e-36  Score=195.82  Aligned_cols=59  Identities=36%  Similarity=0.483  Sum_probs=22.8

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             8887619985577655666500029999869977688486768972222678875897558744
Q 001547          340 PLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF  403 (1056)
Q Consensus       340 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l  403 (1056)
                      .+++|++|++++|++++..+  ++++++|++|++++|.+. .+  ..++.+++|+.++++++.+
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~-~i--~~l~~l~~L~~L~~~~~~~  122 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DI--TPLANLTNLTGLTLFNNQI  122 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CC--GGGTTCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCCCCCCCCCCC
T ss_conf             58999989681881798863--347711010301343332-22--2111233433344332222

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-35  Score=190.64  Aligned_cols=71  Identities=21%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf             34699986599853740775552433335888899858873644477000189998899852785864478553
Q 001547          729 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF  802 (1056)
Q Consensus       729 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  802 (1056)
                      .+..+++|+.+++++|.+... +..  .+++|+.|++++|...+..+..+..++.++.|++++|.+++..+..+
T Consensus       145 ~~~~l~~L~~l~l~~n~l~~l-~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~  215 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNITTI-PQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL  215 (305)
T ss_dssp             GGGGCTTCCEEECCSSCCCSC-CSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCC--CCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             223456567120346774516-710--17766789897886778882676413413301544553322234543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-34  Score=184.39  Aligned_cols=83  Identities=20%  Similarity=0.241  Sum_probs=37.1

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC------CCCCCC
Q ss_conf             56737768981367791100397768877687864854465235699999989853860753478121------189878
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL------VDLNTL  933 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------~~l~~L  933 (1056)
                      .++.|++++|.+.+..+..+.++++|++|+|++|+|+ .+|+.|..+++|+.|++++|+|+...+..|      ..+.+|
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L  274 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY  274 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCHHCCCCCC
T ss_conf             1330154455332223454334433224302554002-463110334678989898986576381002672100215888


Q ss_pred             CEEECCCCCC
Q ss_conf             7687356746
Q 001547          934 AIFIVAYNNL  943 (1056)
Q Consensus       934 ~~l~ls~N~l  943 (1056)
                      +.+++++|++
T Consensus       275 ~~L~L~~N~~  284 (305)
T d1xkua_         275 SGVSLFSNPV  284 (305)
T ss_dssp             SEEECCSSSS
T ss_pred             CEEECCCCCC
T ss_conf             9788989957

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=191.25  Aligned_cols=166  Identities=27%  Similarity=0.277  Sum_probs=80.5

Q ss_pred             CCCCCCCCEEECC-CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             4699986599853-740775552433335888899858873644477000189998899852785864478553566422
Q 001547          730 FFNCSSLVTLDLS-YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH  808 (1056)
Q Consensus       730 ~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  808 (1056)
                      +..+..+..++.. .+.+....+..|.++++|+.|++++|.+....+..+...++|+.+++++|.++++.+..|...+  
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~--  153 (284)
T d1ozna_          76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--  153 (284)
T ss_dssp             TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCHHHHCCCCCCCCCHHHHCCCC--
T ss_conf             122222222222210223544620101010277875688544320135332000121102001431445805740434--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEE
Q ss_conf             23479999999975443457999960221210343103542101110000356737768981367791100397768877
Q 001547          809 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL  888 (1056)
Q Consensus       809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  888 (1056)
                                                                         .|+.|++++|++.+..+..|.++++|+.+
T Consensus       154 ---------------------------------------------------~L~~L~l~~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         154 ---------------------------------------------------NLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             ---------------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ---------------------------------------------------CHHHCCCCCCCCCCCCHHHHCCCCCCCHH
T ss_conf             ---------------------------------------------------05022314176566256665465634131


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             687864854465235699999989853860753478121189878768735674623699
Q 001547          889 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP  948 (1056)
Q Consensus       889 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p  948 (1056)
                      ++++|++++..|..|..+++|+.||+++|++.+..|..+..+.+|+++++++|++.|.++
T Consensus       183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf             421143466281676653200023333352210000023554656889811998878756

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-34  Score=187.18  Aligned_cols=62  Identities=29%  Similarity=0.291  Sum_probs=27.8

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             56737768981367791100397768877687864854465235699999989853860753
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG  921 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  921 (1056)
                      +|+.+++++|++++..|..|..+++|+.|++++|.+.+..|..|+.+.+|+.|++++|++.+
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf             34131421143466281676653200023333352210000023554656889811998878

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-32  Score=175.47  Aligned_cols=179  Identities=26%  Similarity=0.304  Sum_probs=123.3

Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             04898478515332575534699986599853740775552433335888899858873644477000189998899852
Q 001547          711 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS  790 (1056)
Q Consensus       711 L~~L~l~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  790 (1056)
                      ++.|++++|.+. .++.++|.++++|+.|++++|+++.. + .++.+++|+.|++++|++. ..+..+..+++|++|+++
T Consensus        33 l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          33 TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             CCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCC-CCCHHHHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCC
T ss_conf             898988499289-85977863456552213566544443-1-1111223211111222221-111121222222222222


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCC
Q ss_conf             78586447855356642223479999999975443457999960221210343103542101110000356737768981
Q 001547          791 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK  870 (1056)
Q Consensus       791 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  870 (1056)
                      +|.+....+..+...                                                     ..+..|++++|.
T Consensus       109 ~~~~~~~~~~~~~~l-----------------------------------------------------~~l~~L~l~~n~  135 (266)
T d1p9ag_         109 FNRLTSLPLGALRGL-----------------------------------------------------GELQELYLKGNE  135 (266)
T ss_dssp             SSCCCCCCSSTTTTC-----------------------------------------------------TTCCEEECTTSC
T ss_pred             CCCCCEEECCCCCCC-----------------------------------------------------CCCCCCCCCCCC
T ss_conf             231101100112222-----------------------------------------------------111122124342


Q ss_pred             CCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf             36779110039776887768786485446523569999998985386075347812118987876873567462369
Q 001547          871 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI  947 (1056)
Q Consensus       871 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~  947 (1056)
                      +....+..+..++.++.+++++|++++..++.|..+++|+.|+|++|+|+ .+|.++..++.|+.+++++|++.|.+
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             10221233322111000000015652237200134212423430139785-56866777888999983699987886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=171.80  Aligned_cols=135  Identities=31%  Similarity=0.277  Sum_probs=67.7

Q ss_pred             CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99986599853740775552433335888899858873644477000189998899852785864478553566422234
Q 001547          732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESY  811 (1056)
Q Consensus       732 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~  811 (1056)
                      .+++|+.|++++|+++. .+..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+.     
T Consensus        75 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~-----  148 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-----  148 (266)
T ss_dssp             CCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-----
T ss_conf             12232111112222211-111212222222222222311011001122221111221243421022123332211-----


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf             79999999975443457999960221210343103542101110000356737768981367791100397768877687
Q 001547          812 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLS  891 (1056)
Q Consensus       812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  891 (1056)
                                                                      .++.+++++|++++..+..|..+++|+.|+|+
T Consensus       149 ------------------------------------------------~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         149 ------------------------------------------------KLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             ------------------------------------------------TCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ------------------------------------------------CCHHCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             ------------------------------------------------10000000156522372001342124234301


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf             864854465235699999989853860753
Q 001547          892 HNNLTGTIPLTFSNLRHIESLDLSYNKLSG  921 (1056)
Q Consensus       892 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  921 (1056)
                      +|+|+ .+|..+..+++|+.|+|++|++.+
T Consensus       181 ~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             SSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCCC-CCCHHHCCCCCCCEEEECCCCCCC
T ss_conf             39785-568667778889999836999878

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.96  E-value=5.2e-25  Score=138.54  Aligned_cols=57  Identities=32%  Similarity=0.547  Sum_probs=24.8

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             567377689813677911003977688776878648544652356999999898538607534781
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR  925 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  925 (1056)
                      +|++|++++|+++ .+|..   +++|+.|+|++|+|+ .+|..   +++|+.|++++|+++ .+|.
T Consensus       285 ~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         285 SLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCC
T ss_conf             8898979799168-35665---487998989999687-54532---288898987699189-7776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-30  Score=164.78  Aligned_cols=11  Identities=9%  Similarity=0.434  Sum_probs=3.5

Q ss_pred             CCCCEEECCCC
Q ss_conf             98868944696
Q 001547          262 PSLKNLSMSGC  272 (1056)
Q Consensus       262 ~~L~~L~L~~~  272 (1056)
                      +++++|++++|
T Consensus        27 ~~l~~L~L~~~   37 (460)
T d1z7xw1          27 QQCQVVRLDDC   37 (460)
T ss_dssp             TTCSEEEEESS
T ss_pred             CCCCEEEECCC
T ss_conf             79999982899

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.95  E-value=2.2e-24  Score=135.41  Aligned_cols=59  Identities=31%  Similarity=0.519  Sum_probs=31.2

Q ss_pred             CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf             77688776878648544652356999999898538607534781211898787687356746236997
Q 001547          882 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE  949 (1056)
Q Consensus       882 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~  949 (1056)
                      +++|++|+|++|+++ .+|..   +++|+.|++++|+|+ .+|..   +++|+.|++++|+++ .+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCCC---CCCCCEEECCCCCCC-CCCC
T ss_conf             898898979799168-35665---487998989999687-54532---288898987699189-7776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3e-25  Score=139.78  Aligned_cols=79  Identities=16%  Similarity=-0.029  Sum_probs=36.7

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             5673776898136779110039776887768786485446523569999998985386075347812118987876873
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  938 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l  938 (1056)
                      .+..+++++|+++...+..|....-++.+++++|+++.+.+..|.++++|+.|++++|+++...+..|..+..|+++++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             CCEEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             1001220012333322222220111012123543246424788668999998989799289459779737713414767

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=1.4e-24  Score=136.36  Aligned_cols=59  Identities=17%  Similarity=0.260  Sum_probs=24.4

Q ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             999994998779868998972235999974898689945588830003999886998316757
Q 001547          636 KCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI  698 (1056)
Q Consensus       636 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~  698 (1056)
                      .+.+|+.|++.+|.+.. + ..+.++++|+.|++++|.+.+..+  +..+++++.+++++|.+
T Consensus        39 ~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HCCCCCEEECCCCCCCC-C-HHHHCCCCCCEEECCCCEEECCCC--CCCCCCCCCCCCCCCCC
T ss_conf             84886899777999976-6-457448888376357853202543--11233432012111222

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=8.1e-25  Score=137.58  Aligned_cols=176  Identities=23%  Similarity=0.273  Sum_probs=99.9

Q ss_pred             CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5998537407755524333358888998588736444-770001899988998527858644785535664222347999
Q 001547          737 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE-VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS  815 (1056)
Q Consensus       737 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~  815 (1056)
                      +.++.++++++ .+|..+  .++++.|+|++|++++. .+..|..+++|+.|++++|.+.+..+..|...+         
T Consensus        11 ~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~---------   78 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS---------   78 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred             CEEEEECCCCC-CCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC---------
T ss_conf             99997089967-029898--978788984898775530200257876272130136322121212221122---------


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCC
Q ss_conf             99999754434579999602212103431035421011100003567377689813677911003977688776878648
Q 001547          816 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL  895 (1056)
Q Consensus       816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  895 (1056)
                                                                  .|+.|+|++|++....|..|.++++|++|+|++|+|
T Consensus        79 --------------------------------------------~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l  114 (192)
T d1w8aa_          79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI  114 (192)
T ss_dssp             --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred             --------------------------------------------CCCEEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf             --------------------------------------------221010035534434979980797465524577453


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54465235699999989853860753478121189878768735674623699765345888855667887888899
Q 001547          896 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP  972 (1056)
Q Consensus       896 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~  972 (1056)
                      +++.|+.|..+++|++++|++|.+.+..+.... ...+....+..|.+.+..|.   .+....-.++..|.+.|.++
T Consensus       115 ~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~~~c~~p~---~l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC
T ss_pred             CCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHCCCCCCEEECCCH---HHCCCEEEECCHHHCCCCCC
T ss_conf             535977856875334200036443435302777-64235403568982768984---33698861448755758998

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=136.18  Aligned_cols=52  Identities=12%  Similarity=0.042  Sum_probs=26.3

Q ss_pred             EECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             7768981367791100397768877687864854465235699999989853
Q 001547          864 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS  915 (1056)
Q Consensus       864 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  915 (1056)
                      +++++|+++...+..|.++++|+.|+|++|+++...+..|.++++|+.+++.
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf             1235432464247886689999989897992894597797377134147678

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=4.2e-23  Score=128.96  Aligned_cols=16  Identities=25%  Similarity=0.389  Sum_probs=5.5

Q ss_pred             CCCCCCCCEEECCCCC
Q ss_conf             3599997489868994
Q 001547          658 LGNLKGLQHIVMPKNH  673 (1056)
Q Consensus       658 ~~~l~~L~~L~l~~n~  673 (1056)
                      +..++.++.+++++|.
T Consensus        81 l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          81 LKNLTKITELELSGNP   96 (227)
T ss_dssp             GTTCCSCCEEECCSCC
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             1123343201211122

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.6e-23  Score=131.03  Aligned_cols=69  Identities=26%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CCCEEECCCCCCCC-CCCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf             86599853740775-5524333358888998588736444770001899988998527858644785535
Q 001547          735 SLVTLDLSYNYLNG-SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD  803 (1056)
Q Consensus       735 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  803 (1056)
                      +++.|+|++|+++. ..+..|.++++|+.|++++|++....+..+..+++|++|+|++|+++.+.+.+|.
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~   99 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL   99 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHH
T ss_conf             8788984898775530200257876272130136322121212221122221010035534434979980

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.3e-21  Score=121.41  Aligned_cols=52  Identities=27%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             56737768981367791100397768877687864854465235699999989853
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLS  915 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  915 (1056)
                      +|+.+++++|++++. + .+.++++|+.|+|++|+++. +| .+..+++|+.|+|+
T Consensus       157 ~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         157 KLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCCC-C-CCCCCCCCCEEECCCCCCCC-CH-HHCCCCCCCEEECC
T ss_conf             321001346430256-4-53678989999897998998-72-11699998999711

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=2.2e-21  Score=120.35  Aligned_cols=14  Identities=57%  Similarity=0.769  Sum_probs=4.5

Q ss_pred             CCCCCCEEECCCCC
Q ss_conf             99999989853860
Q 001547          905 NLRHIESLDLSYNK  918 (1056)
Q Consensus       905 ~l~~L~~L~L~~N~  918 (1056)
                      ++++|+.|++++|+
T Consensus       170 ~l~~L~~L~ls~N~  183 (199)
T d2omxa2         170 NLTTLERLDISSNK  183 (199)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCC
T ss_conf             79989999787997

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=8.9e-22  Score=122.28  Aligned_cols=74  Identities=28%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             CCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             56737768981367791100397768877687864854465235699999989853860753478121189878768735
Q 001547          860 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  939 (1056)
Q Consensus       860 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls  939 (1056)
                      .++.+++++|.+++  +..+..+++|+.+++++|++++..+  ++++++|+.|++++|+++ .+| .+..+++|++|+++
T Consensus       135 ~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         135 QLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCC-CCH-HHCCCCCCCEEECC
T ss_conf             12221122233345--4310001332100134643025645--367898999989799899-872-11699998999711

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-22  Score=125.96  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=21.7

Q ss_pred             CCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             8876199855776-55666500029999869977688-4867689722226788758975587
Q 001547          341 LAHLQELYIDNND-LRGSLPWCLANTTSLRILDVSFN-QLTGSISSSPLVHLTSIEELRLSNN  401 (1056)
Q Consensus       341 l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n-~l~~~i~~~~l~~l~~L~~L~L~~n  401 (1056)
                      +++|++|++++|. +++.....+..+++|++|++++| .+++.. ...++++++|++|++.++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTS
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCHHH-HHHHHCCCCCCEEEEECC
T ss_conf             22212355322347783033332135768779899999787378-999726999898964488

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=3.4e-20  Score=114.30  Aligned_cols=18  Identities=33%  Similarity=0.678  Sum_probs=7.2

Q ss_pred             CCCCCCCCEEECCCCCCC
Q ss_conf             039776887768786485
Q 001547          879 IGNLTRIQTLNLSHNNLT  896 (1056)
Q Consensus       879 ~~~l~~L~~L~Ls~N~l~  896 (1056)
                      ++++++|+.|++++|+++
T Consensus       168 l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         168 LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             GTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCEEECCCCCCC
T ss_conf             167998999978799799

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-22  Score=123.42  Aligned_cols=40  Identities=20%  Similarity=0.099  Sum_probs=22.2

Q ss_pred             CCCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             77788876199855776-55666500029999869977688
Q 001547          337 GLCPLAHLQELYIDNND-LRGSLPWCLANTTSLRILDVSFN  376 (1056)
Q Consensus       337 ~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n  376 (1056)
                      .+..+++|++|++++|. +++.....++.+++|+.|+++++
T Consensus       195 ~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHCCCCCCCEEECCCCCCCCHHHHHHHHCCCCCCEEEEECC
T ss_conf             32135768779899999787378999726999898964488

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.82  E-value=2.7e-21  Score=119.86  Aligned_cols=269  Identities=18%  Similarity=0.198  Sum_probs=0.0

Q ss_pred             CCEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC----CCHHHCCCCCCCEEECCCCCCCCCCC--------
Q ss_conf             987638999889754454210013899985884789868996----40100289998599569984668669--------
Q 001547           85 LESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNILQGSID--------  152 (1056)
Q Consensus        85 L~~L~Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~Ls~~~~~~~~~--------  152 (1056)
                      ++--.|.-+.++.........++.....++.|+|++|.+...    +...+...++|+.++++++... ...        
T Consensus         5 ~~~~~L~l~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~-~~~~~~~~~~~   83 (344)
T d2ca6a1           5 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG-RVKDEIPEALR   83 (344)
T ss_dssp             CTTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT-SCGGGSHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC-CCCCCCCHHHH
T ss_conf             17888877889987899999999638997889784983778999999999985899888888777543-34542106787


Q ss_pred             --HHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf             --211059999866867899788633322334544302227789766543201110278899868825788778864442
Q 001547          153 --AKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTT  230 (1056)
Q Consensus       153 --~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~  230 (1056)
                        ...+...++|++|++++|                       ..+......+...+...++|++|++++|.+.....  
T Consensus        84 ~l~~~l~~~~~L~~L~L~~n-----------------------~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~--  138 (344)
T d2ca6a1          84 LLLQALLKCPKLHTVRLSDN-----------------------AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--  138 (344)
T ss_dssp             HHHHHHTTCTTCCEEECCSC-----------------------CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH--
T ss_pred             HHHHHHHHCCCCCCCCCCCC-----------------------CCCCCCCCCHHHHHCCCCCCHHEECCCCCCCCCCC--
T ss_conf             99988754777563300001-----------------------34554333101110023432100000246666543--


Q ss_pred             CCC-------------CCCCCCCEEECCCCCCC----CCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf             123-------------58874319965899898----3034543101898868944696356844589877656562320
Q 001547          231 QEL-------------HNFTNLEYLTLDDSSLH----ISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD  293 (1056)
Q Consensus       231 ~~l-------------~~l~~L~~L~L~~~~~~----~~~~~~l~~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~  293 (1056)
                      ..+             ...+.|+.+.++.+.+.    ......+.. .+.|+.++++.|.+.....              
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~g~--------------  203 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS-HRLLHTVKMVQNGIRPEGI--------------  203 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH-CTTCCEEECCSSCCCHHHH--------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHH-HHHHCCCCCCCCCCCCCCC--------------
T ss_conf             1111212222110001467642111013650135543322111123-3321335433322222223--------------


Q ss_pred             CHHHHHCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC------CCCCC
Q ss_conf             112131025202444037866541420258867899864466677788876199855776556665000------29999
Q 001547          294 MRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCL------ANTTS  367 (1056)
Q Consensus       294 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l------~~l~~  367 (1056)
                               ..........++.|+.++++++.+...+...+...+..+++|++|++++|.+.+.....+      ...+.
T Consensus       204 ---------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~  274 (344)
T d2ca6a1         204 ---------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG  274 (344)
T ss_dssp             ---------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC
T ss_pred             ---------CCCHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             ---------20024332110121122233332222222234443323221111030047567156678887763156888


Q ss_pred             CCEEECCCCCCCCCCCCCCCC-----CCCCCCEEECCCCCCC
Q ss_conf             869977688486768972222-----6788758975587444
Q 001547          368 LRILDVSFNQLTGSISSSPLV-----HLTSIEELRLSNNHFR  404 (1056)
Q Consensus       368 L~~L~L~~n~l~~~i~~~~l~-----~l~~L~~L~L~~n~l~  404 (1056)
                      |++|++++|.+...- ...+.     ++++|+.|++++|.+.
T Consensus       275 L~~L~ls~N~i~~~~-~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         275 LQTLRLQYNEIELDA-VRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECCSSCCBHHH-HHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCEEECCCCCCCHHH-HHHHHHHHHCCCCCCCEEECCCCCCC
T ss_conf             898989898698089-99999999703899998978798089

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1e-18  Score=106.88  Aligned_cols=39  Identities=18%  Similarity=0.166  Sum_probs=13.6

Q ss_pred             CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf             9998659985374077555243333588889985887364
Q 001547          732 NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE  771 (1056)
Q Consensus       732 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  771 (1056)
                      +...++.|++++|+|+.+ +..+..+++|+.|++++|+++
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~   54 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR   54 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC
T ss_pred             CCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCC
T ss_conf             857484897889978865-762004145998989799787

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=96.85  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=37.7

Q ss_pred             CCCEEECCCC-CCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf             5673776898-136779110039776887768786485446523569999998985386075347812118987876873
Q 001547          860 LLAGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV  938 (1056)
Q Consensus       860 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l  938 (1056)
                      ++++|++++| .++...+..|.++++|+.|+|++|+|+.+.|..|..+++|+.|+|++|+++ .+|........|+.+++
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEEC
T ss_pred             CCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC-CCCHHHHCCCCCCCCCC
T ss_conf             65743168986644369212256666672162021247742011124554333322678785-15745633532124335


Q ss_pred             CCCCCCC
Q ss_conf             5674623
Q 001547          939 AYNNLSG  945 (1056)
Q Consensus       939 s~N~l~~  945 (1056)
                      ++|++.+
T Consensus       111 ~~Np~~C  117 (156)
T d2ifga3         111 SGNPLHC  117 (156)
T ss_dssp             CSSCCCC
T ss_pred             CCCCCCC
T ss_conf             7986338

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.66  E-value=3.2e-16  Score=94.33  Aligned_cols=121  Identities=22%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             CEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf             87638999889754454210013899985884789868996401002899985995699846686692110599998668
Q 001547           86 ESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEEL  165 (1056)
Q Consensus        86 ~~L~Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~l~~l~~L~~L  165 (1056)
                      |+|+|++|.++....      +..+++|++|++++|.+. .+|+.++.+++|++|++++|.+. .++  .+..+++|++|
T Consensus         1 R~L~Ls~n~l~~l~~------l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSCCC------GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEE
T ss_pred             CEEECCCCCCCCCCC------CCCCCCCCEEECCCCCCC-CCHHHHHHHHCCCCCCCCCCCCC-CCC--CCCCCCCCCEE
T ss_conf             989868998988710------105898898979787168-65215655431354532432112-357--41233555768


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHH-HCCCCCCCCEE
Q ss_conf             6789978863332233454430222778976654320111-02788998688
Q 001547          166 DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQ-SMGSFPSLNTL  216 (1056)
Q Consensus       166 ~Ls~n~l~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L  216 (1056)
                      ++++|.+........+..++.++.++++++.+....+... ....+|+|+.+
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ECCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEE
T ss_conf             8889865888882565379999999897996886826799999989673138

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.66  E-value=2.6e-18  Score=104.82  Aligned_cols=130  Identities=24%  Similarity=0.283  Sum_probs=70.6

Q ss_pred             CCHHHHCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             52433335888899858873644477000189998899852785864478553566422234799999999754434579
Q 001547          750 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG  829 (1056)
Q Consensus       750 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  829 (1056)
                      .+..+..+++|+.|++++|+++.. + .+..+++|+.|++++|.++.. +..+.                          
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~--------------------------   90 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKI-ENLDA--------------------------   90 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSC-SSHHH--------------------------
T ss_pred             HHHHHHCCCCCCEEECCCCCCCCC-C-CCCCCCCCCCHHHCCCCCCCC-CCCCC--------------------------
T ss_conf             246776260461519944689986-4-424782535734135343210-00033--------------------------


Q ss_pred             CCCCHHHHHHEEEEECCCCCCCCCCCHHCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCC-CCCCCCCC
Q ss_conf             99960221210343103542101110000356737768981367791100397768877687864854465-23569999
Q 001547          830 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP-LTFSNLRH  908 (1056)
Q Consensus       830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  908 (1056)
                                                 .++.|+.|++++|+++..  +.+..+++|+.|++++|+++.... ..++.+++
T Consensus        91 ---------------------------~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~  141 (198)
T d1m9la_          91 ---------------------------VADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDK  141 (198)
T ss_dssp             ---------------------------HHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred             ---------------------------CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCC
T ss_conf             ---------------------------221233333333222222--222222234111234102125542212367776


Q ss_pred             CCEEECCCCCCCCCCCCC----------CCCCCCCCEEE
Q ss_conf             998985386075347812----------11898787687
Q 001547          909 IESLDLSYNKLSGKIPRQ----------LVDLNTLAIFI  937 (1056)
Q Consensus       909 L~~L~L~~N~l~~~~p~~----------~~~l~~L~~l~  937 (1056)
                      |+.|++++|++....+..          +..++.|+.||
T Consensus       142 L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             CSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             CCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEC
T ss_conf             302342798434676322220558999998788958769

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.4e-16  Score=93.63  Aligned_cols=112  Identities=16%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             CCEEECCCCCCCCCCCHHCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf             673776898136779110039776887768786-4854465235699999989853860753478121189878768735
Q 001547          861 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN-NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA  939 (1056)
Q Consensus       861 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~ls  939 (1056)
                      ...++.+++.+. ..|..+..+++|+.|++++| .++.+.+..|.++++|+.|++++|+|+...|..|..++.|+.++++
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEECC
T ss_conf             996985289976-5860025765657431689866443692122566666721620212477420111245543333226


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             67462369976534588885566788788889998
Q 001547          940 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP  974 (1056)
Q Consensus       940 ~N~l~~~~p~~~~~~~~~~~~~~~~n~~~c~~~l~  974 (1056)
                      +|+++...+. .-+...+..+.+.+||+.|+|.+.
T Consensus        89 ~N~l~~l~~~-~~~~~~l~~L~L~~Np~~C~C~~~  122 (156)
T d2ifga3          89 FNALESLSWK-TVQGLSLQELVLSGNPLHCSCALR  122 (156)
T ss_dssp             SSCCSCCCST-TTCSCCCCEEECCSSCCCCCGGGH
T ss_pred             CCCCCCCCHH-HHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7878515745-633532124335798633881179

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.62  E-value=4.9e-18  Score=103.45  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=5.4

Q ss_pred             CCCCCCCEEECCCCCC
Q ss_conf             3977688776878648
Q 001547          880 GNLTRIQTLNLSHNNL  895 (1056)
Q Consensus       880 ~~l~~L~~L~Ls~N~l  895 (1056)
                      ..+++|+.|++++|.+
T Consensus       137 ~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         137 AALDKLEDLLLAGNPL  152 (198)
T ss_dssp             TTTTTCSEEEECSSHH
T ss_pred             CCCCCCCEEECCCCCC
T ss_conf             6777630234279843

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.2e-11  Score=69.95  Aligned_cols=16  Identities=38%  Similarity=0.524  Sum_probs=5.8

Q ss_pred             CCCCCCEEECCCCCCC
Q ss_conf             9776887768786485
Q 001547          881 NLTRIQTLNLSHNNLT  896 (1056)
Q Consensus       881 ~l~~L~~L~Ls~N~l~  896 (1056)
                      .+++|+.|+|++|.|+
T Consensus        89 ~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          89 KAPNLKILNLSGNELK  104 (162)
T ss_dssp             HSTTCCCCCCTTSCCC
T ss_pred             HCCCCCCCCCCCCCCC
T ss_conf             5885610004357213

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.83  E-value=1.2e-09  Score=61.30  Aligned_cols=41  Identities=10%  Similarity=0.138  Sum_probs=15.1

Q ss_pred             CCCCEEECCCC-CCCCCCCCCCCHHCCCCCCCCEEECCCCCC
Q ss_conf             79987638999-889754454210013899985884789868
Q 001547           83 QQLESLDLSWN-NIAGCAENEGLERLSRLSKLKKLDLRGNLC  123 (1056)
Q Consensus        83 ~~L~~L~Ls~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~  123 (1056)
                      +.|++|+|+++ .++.......+.++...++|++|++++|.+
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l   56 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI   56 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC
T ss_pred             CCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             998197827999989899999999976377645401201562

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.58  E-value=1.3e-08  Score=56.02  Aligned_cols=39  Identities=8%  Similarity=0.263  Sum_probs=14.6

Q ss_pred             CCCCCEEECCCC-CCCCC----CCHHHCCCCCCCEEECCCCCCC
Q ss_conf             999858847898-68996----4010028999859956998466
Q 001547          110 LSKLKKLDLRGN-LCNNS----ILSSVARLSSLTSLHLSHNILQ  148 (1056)
Q Consensus       110 l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~Ls~~~~~  148 (1056)
                      .++|++|+|+++ .+...    +...+...+.|++|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCC
T ss_conf             99981978279999898999999999763776454012015621

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.15  E-value=1.2e-07  Score=51.21  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=0.0

Q ss_pred             CCEEEEECCCC--CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCC----CCH
Q ss_conf             94299932665--568743235556867879987638999889754454210013899985884789868996----401
Q 001547           56 GRVIGLYLSET--YSGEYWYLNASLFTPFQQLESLDLSWNNIAGCAENEGLERLSRLSKLKKLDLRGNLCNNS----ILS  129 (1056)
Q Consensus        56 ~~v~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~----~~~  129 (1056)
                      ..++.+++++.  ...+.+..-...+...++|++|++++|.++......+.+.+...+.++.++++++.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHH
T ss_conf             99868876899998989999999888419825743015896117789999987752122101210254322014788999


Q ss_pred             HHCCCCCCCE--EECCCCCCCC----CCCHHHHCCCCCCCEEECCCCC
Q ss_conf             0028999859--9569984668----6692110599998668678997
Q 001547          130 SVARLSSLTS--LHLSHNILQG----SIDAKEFDSLSNLEELDINDNE  171 (1056)
Q Consensus       130 ~l~~l~~L~~--L~Ls~~~~~~----~~~~~~l~~l~~L~~L~Ls~n~  171 (1056)
                      .+...++|+.  |+++++.+..    .+.. .+...++|++|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             HHHHCCCCCEEEECCCCCCCCHHHHHHHHH-HHHHCCCCCEEECCCCC
T ss_conf             998486524773216778676799999999-99849984788581898