Citrus Sinensis ID: 001567

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050--
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTSFKEQSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLSVSL
cccccccccEEcccccccccccEEEEEEEcccEEEEEcccEEEEEEccccEEEEEEEEcccHHHHHcccEEEEEEcccccEEEEEEcccEEEEEEEEEcccEEEEcccccccccEEEEEccccccccccccccEEEEEEEcccEEEEEEEcccEEEEEccccccccEEEEccccccccccccccccccccccccccccEEEcccccccccEEEEEEcccccEEEEEEEccEEEEEEEccccccccccEEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEccEEccccccccccccEEEEEcccEEEEEEcccccccEEEEEccccccccccccEEEEEEcccccEEEEEccccEEEEEEEcccEEEcccccccccEEEEEEEEEccEEEEEEEEcccccEEEEEEccccccccccEEEEEcccccEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEEEEEEEEEcccccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccEEEcccEEEEEEEcccccccccccEEEEEEEEcccccEEEccccccccccccccccccccccccccEEEEEEEccccEEEEEEEEEEEccccccccEEEccccEEEHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHcccHHHHHHHHHHcccHHHHHHHEEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHccccEEEEccHHHHHHHHHHccccccccccccccccc
cccccccccEcccccccccccEEEEEEccccEEEEEEEccEEEEEEccccEEEEEEEEEcHHHHHHccccEEEEEcccccEEEEEEcccEEEEEEEEEcccccccccccccccccccccEcEEEEEEEEcccEEEEEEEccccEEEEEEcccEEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccEEEEEEcccEEEEEEEEcccEEEEEEEccccccccEEEEccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccHHHHccccccccccccccccccccccccHHHcccEEEEEcccccEEEEEcccccccEEEEEEHHHccccccccccccEEEEEcccEEEEEEcccccccccEEEEccHHHHHccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEccHHHHHHHHcccEEEEccEEEEEEEEEccccEEEEEEEccccccccEEEEEEccccEEEEEEcccEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEEEEEccccccccEEEEEccccccccccccccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHcEEEEEEcccccccccccHHcEEEEEccccccEEEEccccccccccccHccccccccccccEcEEEEEHccEEEEEEccccEEcccccccEEEcccccHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
mymaygwpqvipleqglcpssqqIIYFKVnngllliaspchielwsssqhkvrlgkykrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEksiqiggkqpsgLFFIKISLVLneqlpfaekglsvsnivsdnkhmllglsdgslysisWKGEFYGAFELVhssndssvaalshhfpsnglasvdtsgafvsdhkfpiSSAIIWLELCLPMRLLFVLysngqlmscsvskkgLKLAEFIKIDkelgsgdavcasiapeqQILAVGTRRGVVELYDLAESASLIRTVSlydwgysmddtgpvsciawtpdnsafavgwksrgltvwsvSGCRLMSTIRQISlssisspivkpnqdckyeplmsgtsmmqwdeyGYRLYAIEEGSSERVLIFSFGKcclnrgvsgmtyaRQVIYGEDrllvvqsedtdelkilhlnlpvsyisqnwpvqhvaasKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNyidssntyellfypryhldqssLLCRKSllakpivmdvYEDYILvtyrpfdvHIFHVKlfgeltpsttpdlqlsTVRELSIMTakshpaamrfipdqvprecslnnhvstssdmlarEPARCLILRAngelslldlddgrereltDSVELFWVTCgqleektslieevswldygyrgmqvwypspgvdpykqedflqldpelefdrevyplgllpnagvVVGVsqrmsfsactefpcfeptpqAQTILHCLLRHLLQRDKIEEALRLAQLsaekphfsHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGreyeqastdsdklsprflgyflfpssyrrpsldkstsfkeqspnvaSVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLSVSL
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYkrdsesvqregenlqavwspdtKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISlssisspivkpnqdCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKiqskgllwlGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFgeltpsttpdlqLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWvtcgqleektsliEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGREYeqastdsdklsprFLGYFLFPSSYRRPSLDKStsfkeqspnvasVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLEligqkvsisvnfsqltlsvsl
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANgelslldlddgrerelTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTSFKEQSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLSVSL
**MAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV******************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSS****VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIM**********FI************************PARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSG**************PRFLGYFLFP**************************ILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLT*****
MYMAYGWPQVIPL*****PSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS***************ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG*********LQLSTVRELSIMTAKSHPAAMRFIPDQVPR*************MLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSP*****************EFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEIS*********************EKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLL**************************************************VKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLS***
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSS**********************LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGR*********DKLSPRFLGYFLFPSSYRR***************VASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLSVSL
MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSL*****TSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISR************RAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSG*******************************************NVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQL******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTSFKEQSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIGQKVSISVNFSQLTLSVSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1052 2.2.26 [Sep-21-2011]
Q69ZJ7 1422 Protein RIC1 homolog OS=M yes no 0.923 0.682 0.254 4e-71
Q4ADV7 1423 Protein RIC1 homolog OS=H no no 0.925 0.684 0.253 1e-69
Q9V3C5 1429 Protein RIC1 homolog OS=D yes no 0.815 0.600 0.242 8e-53
Q09417 1470 Protein RIC1 homolog OS=C yes no 0.234 0.168 0.304 2e-24
O426561052 Protein ric1 OS=Schizosac yes no 0.323 0.323 0.25 8e-13
>sp|Q69ZJ7|RIC1_MOUSE Protein RIC1 homolog OS=Mus musculus GN=Kiaa1432 PE=2 SV=2 Back     alignment and function desciption
 Score =  270 bits (690), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 298/1171 (25%), Positives = 475/1171 (40%), Gaps = 200/1171 (17%)

Query: 1    MYMAYGWPQVIPLEQGLC-PSSQQIIYFKVNN----GLLLIASPCHIELWSSSQHKVRLG 55
            MY   GWP+ +     LC P S       V +        + +P  + +W S +  V + 
Sbjct: 1    MYFLSGWPKRL-----LCAPRSPAEAPLHVQSDPRRAFFAVLAPARLSIWYS-RPSVLIV 54

Query: 56   KYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ-------ITEKSIQIGGK 108
             YK  ++S  + G   QA W PD+ +IAV T++ Y+  F +        + E     G  
Sbjct: 55   TYKEPAKSSTQFGSYKQAEWRPDSTMIAVSTANGYILFFHITSSRGDKYLYEPVYPKGSP 114

Query: 109  QPSGLFFIK-------ISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKG 161
            Q  G+   K       ++L + + L      +S+ +++ D   +L+  SDG L+ I W+G
Sbjct: 115  QMKGIPHFKEEHCAPALNLEMKKILDLQAPIMSLQSVLED---LLVATSDGLLHLIHWEG 171

Query: 162  EFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR 221
               G   +  S+   SV   S              G+F+      I      +E C  + 
Sbjct: 172  MTNGRKAINLSTVPFSVDLQSSRV-----------GSFLGFADVHIKD----MEYCATLD 216

Query: 222  LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVE 281
               V++++G++   +         +   +  +    D  C ++  + +++A G   G V+
Sbjct: 217  GFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQ-DVIDGTCVAVNNKYRLMAFGCASGCVQ 275

Query: 282  LYDLAESAS---LIRTVSLYDWGYS--MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336
            +Y +  +     L   + L    Y    + TG V  I W+PDNSA  V W+  GL++WSV
Sbjct: 276  VYTIDNTTGAMLLSHKLELTAKQYPDIWNKTGAVKLIRWSPDNSAVIVTWEYGGLSLWSV 335

Query: 337  SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSER- 395
             G +L+ T+               +   K +PL   +  M W   GY L+ I    S+  
Sbjct: 336  FGAQLICTL--------GGDFAYRSDGTKKDPLKINS--MSWGAEGYHLWVISGLGSQHT 385

Query: 396  --------------VLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD------ 435
                          +L+F F K  L          + ++ GEDRL +   E +       
Sbjct: 386  QIETDLRSTVKEPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQAQNPKY 445

Query: 436  -----ELKILHLNLPV--------------------------SYISQNWPVQHVAASKDG 464
                 E    H   P                           +Y+  NWP++  A  K G
Sbjct: 446  SSARAERMPRHEKSPFADGGLEAPGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLG 505

Query: 465  MFLAVAGLHGLILYDIRQKKWRVFGDITQEQK-IQSKGLLWLGKIIVVCNYIDSSNTYEL 523
              +AVAG  G   Y +  KKW++FG+ITQEQ  I + GL W    +V+  Y  S    EL
Sbjct: 506  QNIAVAGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWDDFMVLACYNLSDCQEEL 565

Query: 524  LFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTP 582
              Y R  +LD +     K+ + + +++ V+ D ++V      + ++ ++   + + +TT 
Sbjct: 566  RIYLRTSNLDNAFAHVTKAPM-ETLLLSVFRDMVVVFRADCSICLYSIERKSDGS-NTTA 623

Query: 583  DLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANG 642
             +Q+  ++E+S+     HP     +        S  N +S      AR+ A  ++L   G
Sbjct: 624  SVQV--LQEVSMSRYIPHPF---LVVSVTLTSVSTENGISLKMPQQARD-AESIMLNLAG 677

Query: 643  ELSLLDLDDG----RERE----------------LTDSVELFWVTCGQLEEKTSLIEEVS 682
            +L ++  D      RE++                L  SVE  W TC   ++K  L+E + 
Sbjct: 678  QLIMMQRDRSGPQIREKDSHPNQRKLLPFCPPVVLAQSVENVWTTCRANKQKRHLLEAL- 736

Query: 683  WLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGV------ 736
            WL  G  GM+VW P    D  K   FL     L F   +YPL +L    +V+G       
Sbjct: 737  WLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLL 796

Query: 737  --------SQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKP 788
                    S R        F   E T  +Q  LH +LR LL R+  E+AL LAQ  A  P
Sbjct: 797  YDSLYTRSSAREQLEVLFPFCVVERT--SQIYLHHILRQLLVRNLGEQALLLAQSCAALP 854

Query: 789  HFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSV 848
            +F H LE +L  V + E +    ++  I  P       LL     FI  FP +L  VV  
Sbjct: 855  YFPHVLELMLHEVLEEEAT----SREPIPDP-------LLPTVAKFITEFPLFLQTVVHC 903

Query: 849  ARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQ 908
            ARKT+   W  LF+A G   +LFEEC   +   TAA Y++++  +E PAVS+  A  L  
Sbjct: 904  ARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFN 963

Query: 909  ATLDECLYELAGELVRFLLRSGR-EYEQASTDSDKLSPRFLGYFLFPSSYRRPSLDKSTS 967
              L++  ++L   ++RFL   G  E E   +      P   G F F   +R  S+  S S
Sbjct: 964  TALEQGKWDLCRHMIRFLKAIGSGESETPPSTPTSQEPSSSGGFEF---FRNRSISLSQS 1020

Query: 968  FKEQSPNVASVKNILE---------------------------SHASYLMSGKELSKLVA 1000
             +   P    ++  L                             HA  L+    L  L  
Sbjct: 1021 AENVPPGKFGLQKTLSMPTGPSGKRWSKDSECAENMYIDMMLWRHARRLLEEVRLKDLGC 1080

Query: 1001 FVKGTQFDLVEYLQREGRVCARLENFASGLE 1031
            F     F+L+ +L +E    AR++NF   L+
Sbjct: 1081 FAAQLGFELISWLCKERTRAARVDNFVVALK 1111
Required for phosphorylation and localization of GJA1.
Mus musculus (taxid: 10090)
>sp|Q4ADV7|RIC1_HUMAN Protein RIC1 homolog OS=Homo sapiens GN=KIAA1432 PE=1 SV=2 Back     alignment and function description
>sp|Q9V3C5|RIC1_DROME Protein RIC1 homolog OS=Drosophila melanogaster GN=CG9063 PE=1 SV=1 Back     alignment and function description
>sp|Q09417|RIC1_CAEEL Protein RIC1 homolog OS=Caenorhabditis elegans GN=R06F6.8 PE=3 SV=2 Back     alignment and function description
>sp|O42656|RIC1_SCHPO Protein ric1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ric1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1052
2240640531122 predicted protein [Populus trichocarpa] 0.992 0.930 0.830 0.0
2555416621124 conserved hypothetical protein [Ricinus 0.994 0.930 0.841 0.0
3594896641126 PREDICTED: protein RIC1 homolog isoform 0.993 0.928 0.829 0.0
2977453531124 unnamed protein product [Vitis vinifera] 0.991 0.927 0.829 0.0
3565684151121 PREDICTED: protein RIC1 homolog isoform 0.988 0.927 0.813 0.0
1478606491122 hypothetical protein VITISV_010293 [Viti 0.980 0.919 0.827 0.0
3565319671121 PREDICTED: protein RIC1 homolog isoform 0.988 0.927 0.815 0.0
871629091123 WD40-like [Medicago truncatula] 0.992 0.929 0.807 0.0
4494416201135 PREDICTED: protein RIC1 homolog [Cucumis 0.991 0.918 0.779 0.0
3594896661086 PREDICTED: protein RIC1 homolog isoform 0.955 0.925 0.800 0.0
>gi|224064053|ref|XP_002301368.1| predicted protein [Populus trichocarpa] gi|222843094|gb|EEE80641.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1795 bits (4650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1046 (83%), Positives = 948/1046 (90%), Gaps = 2/1046 (0%)

Query: 1    MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
            MYMAYGWPQVIPLEQGLCPS Q+IIYFKV N L L+ SP  +ELWSSSQHKVRLGKYKRD
Sbjct: 1    MYMAYGWPQVIPLEQGLCPSQQRIIYFKVINRLFLVVSPSRLELWSSSQHKVRLGKYKRD 60

Query: 61   SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
            +ES++REGEN+QAVWSPDTKLIA++T+S +LHIFKVQ +EK IQIGGKQPSGLF   I+L
Sbjct: 61   AESLEREGENIQAVWSPDTKLIAILTTSFFLHIFKVQFSEKRIQIGGKQPSGLFLANITL 120

Query: 121  VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
            VLNEQ+PFA+K L+VSN VSDNKHMLLGLS+GSLYSISWKGEFYGAFE+   S DSS  +
Sbjct: 121  VLNEQVPFADKELTVSNFVSDNKHMLLGLSNGSLYSISWKGEFYGAFEINPYSRDSSDTS 180

Query: 181  LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
            +S H   NG AS   S   VS+H     +AI+ LELCLPMRLLFVLYS+GQL+SCSVSK+
Sbjct: 181  ISPHSLGNGFASGRASSGSVSNHNITRKTAIVQLELCLPMRLLFVLYSDGQLVSCSVSKR 240

Query: 241  GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
            GLK  E+IK +K+LGS DAVC S+A +QQILAVGTRRGVVELY+LAESASLIR+VSL DW
Sbjct: 241  GLKQVEYIKPEKKLGSDDAVCTSVASDQQILAVGTRRGVVELYNLAESASLIRSVSLSDW 300

Query: 301  GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
            GYSMD+TGPVSCIAWTPDNSAFAVGWK RGLTVWSVSGCRLMSTIRQI LS +SSP VKP
Sbjct: 301  GYSMDETGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLS-LSSPKVKP 359

Query: 361  NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
            NQ+CKYE LM+GTS+MQWDEYGY+LY IEE S ERV+ FSFGKCCL+RGVSGMTY RQVI
Sbjct: 360  NQECKYEALMNGTSLMQWDEYGYKLYVIEEESLERVIAFSFGKCCLSRGVSGMTYVRQVI 419

Query: 421  YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
            YGEDRLLVVQSEDTDEL+ILHLNLPVSYISQNWPVQHVAASKDGM LAVAGLHGLILYDI
Sbjct: 420  YGEDRLLVVQSEDTDELRILHLNLPVSYISQNWPVQHVAASKDGMHLAVAGLHGLILYDI 479

Query: 481  RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
            + KKWRVFGDITQEQKIQ KGLLWLGKI+VVCNYIDSSNTYELLFYPRYHLDQSSLLCRK
Sbjct: 480  QLKKWRVFGDITQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 539

Query: 541  SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
             LLAKP+VMDVY+D+ILVTYRPFDVHIFHV+L GELTPS+TPDLQLSTVRELSIMTAKSH
Sbjct: 540  PLLAKPMVMDVYQDHILVTYRPFDVHIFHVRLLGELTPSSTPDLQLSTVRELSIMTAKSH 599

Query: 601  PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANGELSLLDLDDGRERELTDS 660
            PAAMRFIPD++PRE + +NH+S SS+ L  EPARCLILR NGELSLLDLDDG ERELTDS
Sbjct: 600  PAAMRFIPDRLPRELASDNHIS-SSEFLDTEPARCLILRTNGELSLLDLDDGHERELTDS 658

Query: 661  VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDRE 720
            VELFWVTCGQ EEK SLIEEVSWLDYG+RGMQVWYP PG DP+KQEDFLQLDPELEFDRE
Sbjct: 659  VELFWVTCGQSEEKASLIEEVSWLDYGHRGMQVWYPCPGADPFKQEDFLQLDPELEFDRE 718

Query: 721  VYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRL 780
            VYPLGLLPNAG+VVGVSQRMSFSACTEFPCFEP+PQAQTILHCLLRHLLQRDK EEALRL
Sbjct: 719  VYPLGLLPNAGLVVGVSQRMSFSACTEFPCFEPSPQAQTILHCLLRHLLQRDKTEEALRL 778

Query: 781  AQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840
            AQLSAEKPHFSHCLE LLFTVFDAEISRQN+ KNQ+S+PK A + SLLEKTC+ IRNF E
Sbjct: 779  AQLSAEKPHFSHCLELLLFTVFDAEISRQNVIKNQVSVPKHAGNCSLLEKTCDLIRNFSE 838

Query: 841  YLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQ 900
            YL+VVVSVARKTDGR+WADLFSAAGRSTELFEECF RRWYRTAACYILVIAKLEGPAVSQ
Sbjct: 839  YLDVVVSVARKTDGRYWADLFSAAGRSTELFEECFLRRWYRTAACYILVIAKLEGPAVSQ 898

Query: 901  YSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRP 960
            Y AL+LLQATLDE LY+LAGELVRFLLRSG+EY+Q STDSD  SPRFLGYFLF SSY++P
Sbjct: 899  YCALQLLQATLDESLYDLAGELVRFLLRSGKEYDQTSTDSDMPSPRFLGYFLFHSSYKKP 958

Query: 961  SLDKSTSFKEQSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVC 1020
            SLDKS S KEQS ++ASVK+ILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRE    
Sbjct: 959  SLDKSNSLKEQSAHIASVKSILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYGS 1018

Query: 1021 ARLENFASGLELIGQKVSISVNFSQL 1046
            ARLENFASGLELIGQK+ + +  S+L
Sbjct: 1019 ARLENFASGLELIGQKLQMGMLQSRL 1044

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541662|ref|XP_002511895.1| conserved hypothetical protein [Ricinus communis] gi|223549075|gb|EEF50564.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359489664|ref|XP_003633961.1| PREDICTED: protein RIC1 homolog isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745353|emb|CBI40433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568415|ref|XP_003552406.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|147860649|emb|CAN81454.1| hypothetical protein VITISV_010293 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531967|ref|XP_003534547.1| PREDICTED: protein RIC1 homolog isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|87162909|gb|ABD28704.1| WD40-like [Medicago truncatula] Back     alignment and taxonomy information
>gi|449441620|ref|XP_004138580.1| PREDICTED: protein RIC1 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|359489666|ref|XP_003633962.1| PREDICTED: protein RIC1 homolog isoform 2 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1052
TAIR|locus:21465891127 AT5G28350 "AT5G28350" [Arabido 0.986 0.921 0.736 0.0
UNIPROTKB|Q4ADV7 1423 KIAA1432 "Protein RIC1 homolog 0.502 0.371 0.297 5.2e-60
FB|FBgn0028500 1429 Rich "RIC1 homolog" [Drosophil 0.437 0.321 0.291 5.8e-57
MGI|MGI:1924893 1422 C030046E11Rik "RIKEN cDNA C030 0.304 0.225 0.332 5.4e-50
UNIPROTKB|G4MP371118 MGG_05699 "Uncharacterized pro 0.230 0.216 0.318 2e-35
WB|WBGene00011071 1470 R06F6.8 [Caenorhabditis elegan 0.267 0.191 0.298 2.2e-35
ASPGD|ASPL00000587511048 AN1283 [Emericella nidulans (t 0.325 0.326 0.250 6.4e-32
POMBASE|SPAC1851.04c1052 ric1 "Ypt/Rab-specific guanyl- 0.339 0.339 0.248 2.3e-17
TAIR|locus:2146589 AT5G28350 "AT5G28350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3985 (1407.8 bits), Expect = 0., P = 0.
 Identities = 766/1040 (73%), Positives = 874/1040 (84%)

Query:     1 MYMAYGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRD 60
             MYMAYGWPQVIPL  G CPSSQ+++Y K+   LLL+ SP H+ELW SSQ +VRLGKY RD
Sbjct:     1 MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRD 60

Query:    61 SESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120
              +SV+ EGENLQAVWSPD KLIAV+TSS +LHI+K++ T+K ++ G +QPS L F  ISL
Sbjct:    61 DKSVREEGENLQAVWSPDAKLIAVLTSSFFLHIYKIKFTDKRVKPGERQPSELCFATISL 120

Query:   121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180
             +L+EQ+PFA K LSVSN V D+K MLLGLSDGSLYSISWKGEF GAF +    +DS+   
Sbjct:   121 LLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWKGEFGGAFSIGSHPSDSNDDR 180

Query:   181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKK 240
             L  +   NGL S   S    SD KF  + AI+ LELC   +LLFVL S+GQL+ CSV+KK
Sbjct:   181 LLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK 240

Query:   241 GLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300
             GLK  E I+ +K++G GDAVCAS+A EQQILAVGTR+G+VELYDL+ S SL+RTVSL+DW
Sbjct:   241 GLKYTESIRAEKKVG-GDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDW 299

Query:   301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360
             GYS D TGPV+ IAWTPDNSAFAVGWKSRGL VWSVSGCRLMST+RQI L+S SSP + P
Sbjct:   300 GYSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINP 359

Query:   361 NQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420
              QDCKYEPLMSGTS +QWDEYGYRL+A EE S +R+L FSFGKCCLNRGVSG TY RQV+
Sbjct:   360 KQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSFGKCCLNRGVSGKTYVRQVM 419

Query:   421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDI 480
             YG+DRLL+VQ+EDTDELK+LHL LPVSYISQNWPVQHVAAS+DG +LA AGLHGLILYDI
Sbjct:   420 YGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDI 479

Query:   481 RQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540
             R KKWRVFGD++QEQ+I  KGLLWLGKI+V+CNYI++S TYELLFYPRYHLDQSSLLCRK
Sbjct:   480 RFKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRK 539

Query:   541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSH 600
              LL KP+VMDVY+DYILV+Y PF +H++HVK++GELTPS+  DLQLSTVRELSIMTAKSH
Sbjct:   540 VLLGKPMVMDVYQDYILVSYLPFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSH 599

Query:   601 PAAMRFIPDQVPRECSLNNHVSTSSDMLAREPARCLILRANXXXXXXXXXXXXXXXXTDS 660
             PAAM F+PDQ  RE  L+N  + SSD+  REP+RCLILR N                TDS
Sbjct:   600 PAAMGFVPDQHLREGELDND-NLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDS 658

Query:   661 VELFWVTCGQLEEKTSLIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDRE 720
             VELFWVTCGQ EEKT+L+EEVSWLDYG+RGMQVWYPS G DP+ QEDFLQLDPELEFDRE
Sbjct:   659 VELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDRE 718

Query:   721 VYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRL 780
             VYPLGLLPN GVVVGVSQRMSFSA  EF CFEPTPQAQTILHCLLRHLLQRDK EEAL L
Sbjct:   719 VYPLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILHCLLRHLLQRDKNEEALLL 778

Query:   781 AQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPE 840
             AQLSAEKPHFSHCLEWLLFTVFDAEISR N N+NQIS P      SLL K C+ I+ FPE
Sbjct:   779 AQLSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPE 838

Query:   841 YLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQ 900
             Y +VVV+VARKTD RHWADLFSAAG ST LFE+CFQRRWYRTAACYILVIAKLEG AVSQ
Sbjct:   839 YYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQ 898

Query:   901 YSALRLLQATLDECLYELAGELVRFLLRSGREYEQASTDSDKLSPRFLGYFLFPSSYRRP 960
             Y ALRLLQATLDE LY+LAGELVRFLLRSGR+ EQA T+SD LSP+ LG+ +F SS+++ 
Sbjct:   899 YCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLLGFLIFGSSHKKS 958

Query:   961 SLDKSTSFKEQSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVC 1020
             SLDKS+SFKEQSP+VASVK+ILESHASYLMSGKELSKLVAFVKGTQFD+V++LQRE   C
Sbjct:   959 SLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGC 1018

Query:  1021 ARLENFASGLELIGQKVSIS 1040
             A+L+NFA+GLELIGQK+ +S
Sbjct:  1019 AQLQNFAAGLELIGQKLQMS 1038
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
UNIPROTKB|Q4ADV7 KIAA1432 "Protein RIC1 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0028500 Rich "RIC1 homolog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1924893 C030046E11Rik "RIKEN cDNA C030046E11 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G4MP37 MGG_05699 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00011071 R06F6.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000058751 AN1283 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC1851.04c ric1 "Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1052
pfam07064251 pfam07064, RIC1, RIC1 6e-83
COG2319466 COG2319, COG2319, FOG: WD40 repeat [General functi 1e-06
>gnl|CDD|219284 pfam07064, RIC1, RIC1 Back     alignment and domain information 
 Score =  268 bits (688), Expect = 6e-83
 Identities = 94/256 (36%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 677 LIEEVSWLDYGYRGMQVWYPSPGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGV 736
            + +  WL  G  G+ VW P    D  +   F+     L    + YPL +L N G+V+G 
Sbjct: 1   HLRDSLWLFCGLSGLLVWLPVQPSDAVELPRFVSKRIMLP--LDFYPLSVLLNKGIVLGA 58

Query: 737 SQRMSFSACTEFPCFEPTPQAQTILHCLLRHLLQRDKIEEALRLAQLSAEKPHFSHCLEW 796
                    + FP      +    L  +LRHLL+R+  E+AL LAQ     P+F H LE 
Sbjct: 59  ESESVQRRDSSFPFLRFEIRTHLFLPYILRHLLKRNWGEQALYLAQHMRHLPYFPHVLEL 118

Query: 797 LLFTVFDAEISRQNINKNQISIPKRAASFSLLEKTCNFIRNFPEYLNVVVSVARKTDGRH 856
           LL TV D E+     +  Q S        SLL    +F++ FPE+L++VV   RKT+ R 
Sbjct: 119 LLHTVLDEEVD----SSEQDSPRD-----SLLPAVISFLQEFPEFLDIVVQCTRKTELRL 169

Query: 857 WADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQATLDECLY 916
           W  LF   G   +LFEEC +    +TAA Y+LV+  LEG A S   A+RLL   L+E  +
Sbjct: 170 WRTLFDYLGPPKDLFEECLELGRLKTAASYLLVLQNLEGSASSSDCAVRLLVLALEEKNW 229

Query: 917 ELAGELVRFLLRSGRE 932
           EL  EL RFL     E
Sbjct: 230 ELCKELARFLAALDEE 245

RIC1 has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor. Length = 251
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1052
KOG20061023 consensus WD40 repeat protein [General function pr 100.0
PF07064258 RIC1: RIC1; InterPro: IPR009771 This entry represe 100.0
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 100.0
KOG0291893 consensus WD40-repeat-containing subunit of the 18 100.0
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.97
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.97
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.97
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.97
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.97
KOG0286343 consensus G-protein beta subunit [General function 99.96
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.95
KOG0263707 consensus Transcription initiation factor TFIID, s 99.95
KOG0263707 consensus Transcription initiation factor TFIID, s 99.95
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.94
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.94
KOG0645312 consensus WD40 repeat protein [General function pr 99.94
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.94
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.94
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.93
KOG0286343 consensus G-protein beta subunit [General function 99.93
KOG0645312 consensus WD40 repeat protein [General function pr 99.93
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.93
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.93
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.93
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.92
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.92
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.92
KOG0266456 consensus WD40 repeat-containing protein [General 99.92
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.92
KOG0266456 consensus WD40 repeat-containing protein [General 99.92
KOG0295406 consensus WD40 repeat-containing protein [Function 99.91
KOG0315311 consensus G-protein beta subunit-like protein (con 99.91
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.91
KOG0315311 consensus G-protein beta subunit-like protein (con 99.91
PLN00181793 protein SPA1-RELATED; Provisional 99.9
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.9
KOG0296399 consensus Angio-associated migratory cell protein 99.9
KOG0295406 consensus WD40 repeat-containing protein [Function 99.9
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.9
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.9
PLN00181793 protein SPA1-RELATED; Provisional 99.89
KOG0293519 consensus WD40 repeat-containing protein [Function 99.89
KOG0293519 consensus WD40 repeat-containing protein [Function 99.89
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.89
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.89
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.88
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.88
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.88
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.88
KOG0296399 consensus Angio-associated migratory cell protein 99.87
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.87
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.87
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.86
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.85
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.85
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.85
PTZ00421493 coronin; Provisional 99.85
KOG2048691 consensus WD40 repeat protein [General function pr 99.85
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.85
KOG0643327 consensus Translation initiation factor 3, subunit 99.84
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.84
KOG2096420 consensus WD40 repeat protein [General function pr 99.84
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.84
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.83
KOG0283712 consensus WD40 repeat-containing protein [Function 99.83
KOG0641350 consensus WD40 repeat protein [General function pr 99.82
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.82
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.82
KOG2096420 consensus WD40 repeat protein [General function pr 99.82
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.82
KOG0772641 consensus Uncharacterized conserved protein, conta 99.81
PTZ00420568 coronin; Provisional 99.81
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.81
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.81
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.81
KOG1274933 consensus WD40 repeat protein [General function pr 99.81
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.81
KOG2048691 consensus WD40 repeat protein [General function pr 99.81
KOG0283712 consensus WD40 repeat-containing protein [Function 99.81
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.81
KOG1539910 consensus WD repeat protein [General function pred 99.81
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.81
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.8
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.8
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.8
KOG0294362 consensus WD40 repeat-containing protein [Function 99.8
KOG1539910 consensus WD repeat protein [General function pred 99.8
PTZ00421493 coronin; Provisional 99.8
KOG2106626 consensus Uncharacterized conserved protein, conta 99.79
KOG0300481 consensus WD40 repeat-containing protein [Function 99.79
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.79
KOG0643327 consensus Translation initiation factor 3, subunit 99.79
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.79
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.79
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.79
KOG0289506 consensus mRNA splicing factor [General function p 99.77
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.76
PTZ00420568 coronin; Provisional 99.76
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.76
KOG0294362 consensus WD40 repeat-containing protein [Function 99.75
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.75
KOG0641350 consensus WD40 repeat protein [General function pr 99.74
KOG0289506 consensus mRNA splicing factor [General function p 99.74
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.74
KOG0639705 consensus Transducin-like enhancer of split protei 99.74
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.73
KOG0301745 consensus Phospholipase A2-activating protein (con 99.73
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.73
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.73
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.72
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.72
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.72
KOG0301745 consensus Phospholipase A2-activating protein (con 99.72
KOG0639705 consensus Transducin-like enhancer of split protei 99.71
KOG0300481 consensus WD40 repeat-containing protein [Function 99.71
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.71
KOG1273405 consensus WD40 repeat protein [General function pr 99.71
KOG0772641 consensus Uncharacterized conserved protein, conta 99.7
KOG0267825 consensus Microtubule severing protein katanin p80 99.7
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.7
KOG2106626 consensus Uncharacterized conserved protein, conta 99.69
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.68
KOG0269839 consensus WD40 repeat-containing protein [Function 99.68
KOG4283397 consensus Transcription-coupled repair protein CSA 99.68
KOG2055514 consensus WD40 repeat protein [General function pr 99.68
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.67
KOG0646476 consensus WD40 repeat protein [General function pr 99.66
KOG0646476 consensus WD40 repeat protein [General function pr 99.66
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.65
KOG0267825 consensus Microtubule severing protein katanin p80 99.65
KOG1274933 consensus WD40 repeat protein [General function pr 99.65
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.65
KOG0269839 consensus WD40 repeat-containing protein [Function 99.64
KOG2055514 consensus WD40 repeat protein [General function pr 99.64
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.64
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.62
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.61
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.61
KOG4283397 consensus Transcription-coupled repair protein CSA 99.59
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.57
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.56
KOG1273405 consensus WD40 repeat protein [General function pr 99.56
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.55
KOG0302440 consensus Ribosome Assembly protein [General funct 99.53
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.52
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.5
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.49
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.49
KOG0303472 consensus Actin-binding protein Coronin, contains 99.48
KOG0270463 consensus WD40 repeat-containing protein [Function 99.48
COG2319466 FOG: WD40 repeat [General function prediction only 99.48
KOG4328498 consensus WD40 protein [Function unknown] 99.47
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 99.47
KOG4328498 consensus WD40 protein [Function unknown] 99.47
KOG0302440 consensus Ribosome Assembly protein [General funct 99.46
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.45
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.44
KOG0649325 consensus WD40 repeat protein [General function pr 99.44
KOG0771398 consensus Prolactin regulatory element-binding pro 99.43
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.43
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 99.4
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.4
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 99.39
KOG1963792 consensus WD40 repeat protein [General function pr 99.38
KOG1963792 consensus WD40 repeat protein [General function pr 99.37
KOG0270463 consensus WD40 repeat-containing protein [Function 99.37
COG2319466 FOG: WD40 repeat [General function prediction only 99.37
KOG06441113 consensus Uncharacterized conserved protein, conta 99.36
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.36
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.35
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.34
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 99.34
KOG0303472 consensus Actin-binding protein Coronin, contains 99.33
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.32
PRK01742429 tolB translocation protein TolB; Provisional 99.32
KOG0771398 consensus Prolactin regulatory element-binding pro 99.31
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 99.3
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 99.29
PRK11028330 6-phosphogluconolactonase; Provisional 99.29
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.28
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.26
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 99.26
KOG1188376 consensus WD40 repeat protein [General function pr 99.26
KOG15171387 consensus Guanine nucleotide binding protein MIP1 99.26
PRK11028330 6-phosphogluconolactonase; Provisional 99.25
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.25
KOG4497447 consensus Uncharacterized conserved protein WDR8, 99.25
KOG2110391 consensus Uncharacterized conserved protein, conta 99.25
KOG2111346 consensus Uncharacterized conserved protein, conta 99.25
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 99.25
KOG1188376 consensus WD40 repeat protein [General function pr 99.2
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.2
KOG4227609 consensus WD40 repeat protein [General function pr 99.18
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.16
PRK01742429 tolB translocation protein TolB; Provisional 99.16
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 99.14
KOG2110391 consensus Uncharacterized conserved protein, conta 99.14
KOG0644 1113 consensus Uncharacterized conserved protein, conta 99.14
KOG0322323 consensus G-protein beta subunit-like protein GNB1 99.12
KOG1310758 consensus WD40 repeat protein [General function pr 99.07
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 99.05
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 99.05
KOG0649325 consensus WD40 repeat protein [General function pr 99.05
KOG14451012 consensus Tumor-specific antigen (contains WD repe 99.04
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 99.04
PRK03629429 tolB translocation protein TolB; Provisional 99.04
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 99.02
KOG0290364 consensus Conserved WD40 repeat-containing protein 99.02
KOG12401431 consensus Protein kinase containing WD40 repeats [ 99.01
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.0
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 99.0
KOG2139445 consensus WD40 repeat protein [General function pr 98.98
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.96
PRK05137435 tolB translocation protein TolB; Provisional 98.93
KOG2139445 consensus WD40 repeat protein [General function pr 98.91
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.9
KOG4227609 consensus WD40 repeat protein [General function pr 98.89
PRK04922433 tolB translocation protein TolB; Provisional 98.88
KOG2321703 consensus WD40 repeat protein [General function pr 98.88
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.85
PRK03629429 tolB translocation protein TolB; Provisional 98.84
KOG4497447 consensus Uncharacterized conserved protein WDR8, 98.84
PRK02889427 tolB translocation protein TolB; Provisional 98.81
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.8
PRK04922433 tolB translocation protein TolB; Provisional 98.78
KOG1310758 consensus WD40 repeat protein [General function pr 98.77
PRK02889427 tolB translocation protein TolB; Provisional 98.76
PRK05137435 tolB translocation protein TolB; Provisional 98.72
KOG2315566 consensus Predicted translation initiation factor 98.72
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 98.72
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.71
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.68
PRK04792448 tolB translocation protein TolB; Provisional 98.66
KOG4547541 consensus WD40 repeat-containing protein [General 98.66
KOG2111346 consensus Uncharacterized conserved protein, conta 98.64
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.62
KOG19121062 consensus WD40 repeat protein [General function pr 98.6
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 98.59
KOG4547541 consensus WD40 repeat-containing protein [General 98.59
KOG1334559 consensus WD40 repeat protein [General function pr 98.58
KOG0974967 consensus WD-repeat protein WDR6, WD repeat superf 98.58
KOG2321703 consensus WD40 repeat protein [General function pr 98.57
PRK01029428 tolB translocation protein TolB; Provisional 98.56
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.56
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.54
KOG1334559 consensus WD40 repeat protein [General function pr 98.54
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.53
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.51
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.51
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 98.5
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.5
KOG0974967 consensus WD-repeat protein WDR6, WD repeat superf 98.49
PRK00178430 tolB translocation protein TolB; Provisional 98.47
KOG1409404 consensus Uncharacterized conserved protein, conta 98.4
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.37
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.34
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 98.34
PRK01029428 tolB translocation protein TolB; Provisional 98.31
PRK00178430 tolB translocation protein TolB; Provisional 98.28
PRK04792448 tolB translocation protein TolB; Provisional 98.28
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 98.27
KOG2314698 consensus Translation initiation factor 3, subunit 98.26
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.23
KOG2315566 consensus Predicted translation initiation factor 98.22
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.2
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.12
COG4946668 Uncharacterized protein related to the periplasmic 98.1
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.1
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 98.09
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.05
KOG4532344 consensus WD40-like repeat containing protein [Gen 98.04
KOG0280339 consensus Uncharacterized conserved protein [Amino 98.04
KOG2314698 consensus Translation initiation factor 3, subunit 98.03
COG4946668 Uncharacterized protein related to the periplasmic 98.02
PRK04043419 tolB translocation protein TolB; Provisional 98.02
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 98.01
KOG2041 1189 consensus WD40 repeat protein [General function pr 98.01
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.0
KOG1409404 consensus Uncharacterized conserved protein, conta 97.94
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.88
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 97.86
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.82
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.81
KOG0280339 consensus Uncharacterized conserved protein [Amino 97.79
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.75
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 97.74
PRK04043419 tolB translocation protein TolB; Provisional 97.73
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 97.73
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 97.67
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 97.67
KOG1912 1062 consensus WD40 repeat protein [General function pr 97.64
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.62
KOG4714319 consensus Nucleoporin [Nuclear structure] 97.61
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 97.58
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 97.54
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 97.49
KOG41901034 consensus Uncharacterized conserved protein [Funct 97.46
KOG4714319 consensus Nucleoporin [Nuclear structure] 97.42
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.41
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 97.32
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 97.3
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 97.28
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 97.26
KOG3621726 consensus WD40 repeat-containing protein [General 97.24
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 97.22
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 97.22
KOG2695425 consensus WD40 repeat protein [General function pr 97.21
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 97.15
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.15
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 97.13
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 97.03
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 96.99
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 96.76
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.65
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 96.65
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.57
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 96.53
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 96.44
KOG2695425 consensus WD40 repeat protein [General function pr 96.42
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 96.41
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 96.38
KOG18971096 consensus Damage-specific DNA binding complex, sub 96.35
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 96.31
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 96.28
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 96.12
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 96.12
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 96.04
KOG3621726 consensus WD40 repeat-containing protein [General 96.02
COG0823425 TolB Periplasmic component of the Tol biopolymer t 95.93
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 95.8
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 95.67
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 95.6
PRK02888635 nitrous-oxide reductase; Validated 95.57
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 95.54
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 95.42
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 95.41
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 95.37
smart0032040 WD40 WD40 repeats. Note that these repeats are per 94.96
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.52
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 94.48
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 94.39
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 94.27
COG3490366 Uncharacterized protein conserved in bacteria [Fun 94.26
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 94.26
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 93.91
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 93.9
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 93.89
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 93.66
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 93.49
PRK02888635 nitrous-oxide reductase; Validated 93.37
KOG1008783 consensus Uncharacterized conserved protein, conta 93.15
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 93.0
PRK13616591 lipoprotein LpqB; Provisional 92.86
COG3391381 Uncharacterized conserved protein [Function unknow 92.63
KOG20061023 consensus WD40 repeat protein [General function pr 92.32
COG0823425 TolB Periplasmic component of the Tol biopolymer t 92.21
PRK13616591 lipoprotein LpqB; Provisional 92.15
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 91.82
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 91.78
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 91.39
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 91.05
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 90.95
KOG18981205 consensus Splicing factor 3b, subunit 3 [RNA proce 90.7
KOG2444238 consensus WD40 repeat protein [General function pr 89.41
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 89.4
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 89.32
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 89.27
PF15390671 DUF4613: Domain of unknown function (DUF4613) 87.89
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 87.68
PF12657173 TFIIIC_delta: Transcription factor IIIC subunit de 87.02
PF11635753 Med16: Mediator complex subunit 16; InterPro: IPR0 86.66
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 86.6
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 85.78
KOG18971096 consensus Damage-specific DNA binding complex, sub 85.69
KOG3630 1405 consensus Nuclear pore complex, Nup214/CAN compone 84.55
KOG4649354 consensus PQQ (pyrrolo-quinoline quinone) repeat p 84.11
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 83.36
KOG1008783 consensus Uncharacterized conserved protein, conta 82.97
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 81.59
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 81.46
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 81.28
KOG2377657 consensus Uncharacterized conserved protein [Funct 81.23
COG3204316 Uncharacterized protein conserved in bacteria [Fun 80.92
>KOG2006 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-102  Score=907.15  Aligned_cols=781  Identities=34%  Similarity=0.487  Sum_probs=599.8

Q ss_pred             eCCcEEEEEecCCceeeeeecccceecCCCCeEEEEEcCCCCEEEEEeeCCeEEEEecCCCCceeEEEEeecCCCCCCCC
Q 001567          228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT  307 (1052)
Q Consensus       228 ~dG~~~~~~~~d~~i~~w~~~~~~~~~gh~~~v~va~spd~~~lAsgs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~  307 (1052)
                      .||+......+....+.-.....+. .--++++|++++..++++|+|+..|.+.+|+..............++    +++
T Consensus       121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~t  195 (1023)
T KOG2006|consen  121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLT  195 (1023)
T ss_pred             ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----ccc
Confidence            7787665555443322211111111 23468889999999999999999999999998763332222222122    255


Q ss_pred             CCeeEEEECCCCCEEEEEEcCCcEEEEEcCCCeEEEEecccccCceeeeeEcCCCCCCccceeeeeeeeEEecCCceEEE
Q 001567          308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA  387 (1052)
Q Consensus       308 g~V~~l~~SpDg~~Lasg~~Dg~v~vWd~~~~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~  387 (1052)
                      -++..+.|+|+++.+|.++..|...+|+..++..+.+.............|+|.......+-.+......|...+..++.
T Consensus       196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~  275 (1023)
T KOG2006|consen  196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP  275 (1023)
T ss_pred             ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence            58899999999999999999999999999999877766654344555666766654444444555577788888777776


Q ss_pred             EecCCcccEEEEeccceeeeeccCCceeeeEeeecCceEEEEecCC---cchheeeeeccCcccccCCCcEEEEEEccCC
Q 001567          388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG  464 (1052)
Q Consensus       388 ~~~~~~~~v~~~s~~k~~~s~s~d~~v~~w~~~~~~~~l~~~~~~~---~~~~~w~~~~~p~~~~~h~~~V~~va~SpdG  464 (1052)
                      ........+..+.....+.   ..++........++.++++....+   .+...|.++++|.+|...+|||++++.++||
T Consensus       276 ~~~~~~~~~~~~~s~sc~~---~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg  352 (1023)
T KOG2006|consen  276 HGEQILTISDFKVSKSCLV---ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG  352 (1023)
T ss_pred             ccccccchhheeecccccc---cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence            5433222221111111111   123333333445555554444333   5566899999999999999999999999999


Q ss_pred             CEEEEEeCCceEEEEccCCcEEEecCccceeeeEEEE-EEEeCCEEEEEEEecCCCeEEEEEeeCC-CCCCcceeEEeec
Q 001567          465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSKG-LLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL  542 (1052)
Q Consensus       465 ~~lavag~dG~ilwd~~s~~w~~f~~~~~e~~~~v~g-l~W~~~~li~~~~~~~~~~~elrly~~~-~ld~~~~l~~~~~  542 (1052)
                      .++|+||..|.++|++.+++||.|+++.||+.+.|+| +.|++++++.||+...+..+++++|+++ ++|+. ..+....
T Consensus       353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~  431 (1023)
T KOG2006|consen  353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA  431 (1023)
T ss_pred             cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence            9999999999999999999999999999999999884 9999999999999999999999999998 67764 3444333


Q ss_pred             CCccEEEEeeCCEEEEEEcCCeEEEEEEEEecccCCCCCCceEEEEEEEEeeecccCCCceEEEccCCCccccccCCCCC
Q 001567          543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS  622 (1052)
Q Consensus       543 ~~~~~~~s~~~~~llv~~~d~~i~l~~~~~~~~~~~~~~~~i~l~~~~~i~~~~~~~hp~~v~~i~~~~~~~~~~~~~~~  622 (1052)
                      ......+.+.++.+++++.|+.+.+|++..+.      ...+.+..+++++++.+++||++|++++.+++++.....  +
T Consensus       432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~--~  503 (1023)
T KOG2006|consen  432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN--D  503 (1023)
T ss_pred             hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc--c
Confidence            33344466777888899999999999886432      456788889999999999999999999999876321111  1


Q ss_pred             CCccccccCCceeEEEeeCCEEEEEecCC-------CceeeeccceeEEEEcCCCCccccCccceeeEEEECCCC-----
Q 001567          623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG-----  690 (1052)
Q Consensus       623 ~~~~~~~~~~~~~~il~~~g~l~~l~~~~-------~~~~~l~~~VE~~w~~~~~~~~~~~~~~~~~~~~~~~~g-----  690 (1052)
                      ..+.+      ..+....+|.+.++....       ..+..++.+||++|++. +..  ...+.+..|+.+|..|     
T Consensus       504 ~l~~~------~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~s-s~~--~~~~~d~~Wl~~g~~~~~~~~  574 (1023)
T KOG2006|consen  504 NLQFY------KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNS-SFE--DQQVLDLHWLGDGANGCHMKN  574 (1023)
T ss_pred             chhHh------hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCc-HHh--hhhhhhceeeccCCCcccccc
Confidence            11211      122333445554444322       25678999999999883 222  2245577888999999     


Q ss_pred             cEEe---------ccC-----CCCCCCCcccccccCcccccccceeeeeeecCCcEEEEEeeeeecccCcC-----ccce
Q 001567          691 MQVW---------YPS-----PGVDPYKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFSACTE-----FPCF  751 (1052)
Q Consensus       691 ~~vw---------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~yPl~i~~~~~~i~g~~~~~~~~~~~~-----~~~~  751 (1052)
                      |+.|         ++.     .+.+.+..++|.++++|++|++++|||.++++++++.|++|+.....+..     +++.
T Consensus       575 ~~g~~~~l~~~~~~~~g~~~~~~~~~~~~~sF~~k~~ml~f~l~~Ypl~~l~~~~~~~gv~~~~~l~asa~~~~~~~~f~  654 (1023)
T KOG2006|consen  575 MDGCPNHLCLALWLSEGNVWDLVMDAYRVPSFLSKRIMLPFTLNIYPLVLLKNVNLVLGVEQEDALLASAEIILFTLTFD  654 (1023)
T ss_pred             ccCCccccccceeecccchhhcccccccCchhhhhccccccchhhceeeeecccceeeeccchhhhhhhccccccccchH
Confidence            6555         333     34567788999999999999999999999999999999999976554333     3444


Q ss_pred             ecCCcceecHHHHHH--HHHHcccHHHHHHHHHHcCCCCCchHHHHHHHHHhhccccccccccccccCCccccchhhhHH
Q 001567          752 EPTPQAQTILHCLLR--HLLQRDKIEEALRLAQLSAEKPHFSHCLEWLLFTVFDAEISRQNINKNQISIPKRAASFSLLE  829 (1052)
Q Consensus       752 ~~~~~~~~~L~~il~--~ll~~~~~~~a~~~a~~~~~l~~f~~~LE~lLh~vle~e~~~~~~~~~~~~i~~~~~~~~ll~  829 (1052)
                      -..++|++|+|.+++  |+|+||.++.|+.+|+.|+.+|||+|+||+|||+|||+|+++++|      ||+     ++||
T Consensus       655 v~~~~h~~~l~~i~~l~q~lkrnl~~~aLllaq~~a~~p~f~h~le~ll~~Vle~e~ts~~p------~~d-----~~l~  723 (1023)
T KOG2006|consen  655 VQERLHQIYLHIILHLYQLLKRNLGEDALLLAQECAILPHFTHALELLLHFVLEEEATSSEP------IPD-----KLLP  723 (1023)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHhhccHHHHHhHHHHHhcccchHHHHHHHHHHHHHhhcCCCC------ccc-----hhHH
Confidence            456789999999999  999999999999999999999999999999999999999999875      887     7999


Q ss_pred             HHHHHHHccchhHHHHhhhcccccccchHHhHhccCChHHHHHHHHhcCcHhHHhhhhhhhhhccCcchhHHHHHHHHHH
Q 001567          830 KTCNFIRNFPEYLNVVVSVARKTDGRHWADLFSAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVSQYSALRLLQA  909 (1052)
Q Consensus       830 ~v~~fi~~~~~~l~ivv~caRKtE~~~W~~lF~~~g~P~~Lf~~cl~~~~l~~aa~yLiv~~~~e~~~~~~~~~~~Ll~~  909 (1052)
                      ++++||++||+|+++|||||||||.++|++||+++|.|+||||+||++.+++|||+||||+||+|++++++++|++|+++
T Consensus       724 ~i~d~I~eFp~fl~~vv~caRKTe~~lW~~lF~~~G~PkdLfe~Clqt~~~~tAA~~Liilqnle~savs~~~a~~L~q~  803 (1023)
T KOG2006|consen  724 KIIDFIREFPEFLKTVVNCARKTEAALWPDLFSAVGIPKDLFEECLQTEDLDTAASYLIILQNLEGSAVSVQHALRLLQL  803 (1023)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhcCCcHHHHHHHhhccchhhhceeeeeeeccccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccHhHHHHHHHHhhhcCcCcccCCC----CCCCCCCcccc---ceecCC-------CCC--------------CCC
Q 001567          910 TLDECLYELAGELVRFLLRSGREYEQAST----DSDKLSPRFLG---YFLFPS-------SYR--------------RPS  961 (1052)
Q Consensus       910 al~~~~w~l~~eL~RFl~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~-------~~~--------------~~~  961 (1052)
                      ||++++||+|+||+|||++|||+..+.|+    .+.-.+|...+   ++-.+.       +.+              +.+
T Consensus       804 aL~~~kwdl~~Elirfl~~i~p~~~~~~~~~~~~~~~~~~s~d~~~~f~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~  883 (1023)
T KOG2006|consen  804 ALEEKKWDLAKELIRFLRSIGPEKIDLPTKLIATPTLRSPSLDKSLEFIDQRNNVLSEHAILESVHSSMLSIQKNCKRKS  883 (1023)
T ss_pred             HHHhhcchhHHHHHHHHHhcCcchhhccchhccCccccCccchhhhHHHHhhccccccccccCCccchhhcccccccccc
Confidence            99999999999999999999999887776    12111222211   110000       000              111


Q ss_pred             CCCCCcc-----cc--CCcchhhHHHHHHHHHHhhhcccchhhHHhhhhccCCCchHHhhhcccceeeeccHHHHHHHHh
Q 001567          962 LDKSTSF-----KE--QSPNVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQREGRVCARLENFASGLELIG 1034 (1052)
Q Consensus       962 ~~~~~~~-----~~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~l~~~~ 1034 (1052)
                      ..+..+.     +.  ...+.++|+.||+|||++||.+..|.|+|+|+++++|++++||.+||.|+|+.++|+.++..+|
T Consensus       884 ~~~g~~~~~~~~~~~~~~~l~~~i~~~l~~ha~~lL~~~~l~dlg~~~~~l~f~l~~~l~~er~~~~~~~~~~~~~~~l~  963 (1023)
T KOG2006|consen  884 GTKGWNHDKTNLKQTPRDRLALCIDEILARHARVLLLNFLLLDLGCFGADLHFKLVSLLTEERKRAADNDTFKSELSVLH  963 (1023)
T ss_pred             CCCCcccchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcceeehhhhHHHHHHHhcCchhhhHHHHHH
Confidence            1111110     00  1225568999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccce
Q 001567         1035 QKVSISVNFSQ 1045 (1052)
Q Consensus      1035 ~~~~~~~~~~~ 1045 (1052)
                      ++|-++-++--
T Consensus       964 ~~~~l~l~~~~  974 (1023)
T KOG2006|consen  964 EDFDLELPLKV  974 (1023)
T ss_pred             Hhhccccchhh
Confidence            99999887643

>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2006 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] Back     alignment and domain information
>KOG2444 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF15390 DUF4613: Domain of unknown function (DUF4613) Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) Back     alignment and domain information
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] Back     alignment and domain information
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG2377 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1052
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 1e-05
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 3e-05
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 65.6 bits (159), Expect = 8e-11
 Identities = 65/464 (14%), Positives = 126/464 (27%), Gaps = 165/464 (35%)

Query: 240 KGLKLAEFIKIDKELGSG-----DAVCASIAPEQQI------LAVGTRRGVVELYDLAES 288
             L+ A+ + ID  LGSG       VC S   + ++      L +        +      
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV------ 198

Query: 289 ASLIRTVSLYDWGYSMD--DTGPVSCIAWTPDNSAFAVGWKSRGLT-------------V 333
             L     L    Y +D   T      +              R L              V
Sbjct: 199 --LEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 334 WSVS-------GCRLMSTIRQISLSSISSPIVK--------------------------- 359
            +          C+++ T R   ++   S                               
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 360 -----PNQDCKYEPL---MSGTSM----MQWDEYGY-----------------------R 384
                P +     P    +   S+      WD + +                       +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 385 LY---AI-------------------EEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYG 422
           ++   ++                    +     V+        + +     T +   I  
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPS 430

Query: 423 EDRLLVVQSEDTDEL--KIL-HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYD 479
               L V+ E+   L   I+ H N+P ++ S +    ++    D  F +  G H   L +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHH---LKN 483

Query: 480 IRQ-KKWRVFGDITQ-----EQKIQSKGLLW---------LGKIIVVCNYI-DSSNTYEL 523
           I   ++  +F  +       EQKI+     W         L ++     YI D+   YE 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 524 L------FYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561
           L      F P+   +++ +  + + L +  +M   E      ++
Sbjct: 544 LVNAILDFLPKI--EENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1052
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 2e-05
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 6e-04
d1gxra_337 b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum 7e-04
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 0.002
d1nr0a2299 b.69.4.1 (A:313-611) Actin interacting protein 1 { 0.002
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 0.003
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 16/124 (12%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320
           C +   ++  +A+      V +Y+       ++   L +        G V+ + W PD++
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKE------HNGQVTGVDWAPDSN 64

Query: 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380
                   R   VW++ G     T+  + ++  +  +     + K+        +     
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 381 YGYR 384
               
Sbjct: 125 EQEN 128
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1052
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 100.0
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 100.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 100.0
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.97
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.97
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.97
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.96
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.96
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.96
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.95
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.95
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.94
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.94
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.93
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.92
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.92
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.9
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.9
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.9
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.88
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.88
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.87
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.86
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.86
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.77
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.76
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.73
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.72
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.72
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.72
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.71
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.65
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.64
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.64
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.63
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.62
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.61
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.5
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.33
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.14
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.02
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.76
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.75
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.67
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.46
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.27
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 98.18
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 98.12
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 97.97
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.94
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.65
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.63
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.61
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.4
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 97.4
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.07
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 96.73
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 96.29
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 96.26
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 96.09
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 93.89
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 90.84
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-30  Score=210.95  Aligned_cols=315  Identities=13%  Similarity=0.117  Sum_probs=205.8

Q ss_pred             EEEEECCEEEEEECCCCEEEEECCCCEEEEEEEECCHHHHHHCCCCCEEEECCCCCEEEEEECCCEEEEEEEEECCCEEE
Q ss_conf             99863771999983890799514885047999861916665128521699967963999996894899999873674121
Q 001567           25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ  104 (1052)
Q Consensus        25 v~fs~dg~lla~~~~~~v~IW~~~~~~~~l~~~~rs~~sl~~~G~n~~v~wsPDg~~Lav~T~dg~l~i~~i~~~~~~~~  104 (1052)
                      ...++||.+..+.....-.+- ..-|+-     .+....+.|.+.+.+++|+|||++||+++ ||.|+||++........
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~-~~~p~~-----~~~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~   87 (337)
T d1gxra_          15 FHVTADGQMQPVPFPPDALIG-PGIPRH-----ARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP   87 (337)
T ss_dssp             EEECSSSCEEECCCCTTSSSS-TTCCSE-----EEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred             CCCCCCCCEEEECCCCCCEEC-CCCCCC-----CEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCE
T ss_conf             219899978740369751456-799987-----54999879999289999989999999997-99889977367763311


Q ss_pred             CCCCCCCCCEEEEEEEEECCCCCCCCCCCEEEEE--EECCCEEEEEECCCCEEEEECCCCCCCCEEECCCCCCCCCCEEE
Q ss_conf             1799999841245755411200133366208887--53498399996389199994368556630101367888630120
Q 001567          105 IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS  182 (1052)
Q Consensus       105 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~v~~i--~~d~~~llv~t~dg~i~~~~w~~~~~~~~~l~~~~~~~~~i~~i  182 (1052)
                                +.        ......+...|.++  .+++..+++++.||.+++|..........               
T Consensus        88 ----------~~--------~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~---------------  134 (337)
T d1gxra_          88 ----------VS--------QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK---------------  134 (337)
T ss_dssp             ----------SE--------EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---------------
T ss_pred             ----------EE--------EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCC---------------
T ss_conf             ----------68--------764048899689999867998898861233211111111111111---------------


Q ss_pred             CCCCCCCCEEECCCCCEEECCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEEEEECCCCEE---CCCCCE
Q ss_conf             24689963010279970212446888619999965786359999608959999862794244110123210---698980
Q 001567          183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA  259 (1052)
Q Consensus       183 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~s~dG~~~~~~~~d~~i~~w~~~~~~~~---~gh~~~  259 (1052)
                                         .....+...+..+.          +++++..+++++.++.++.|+....+..   .+|.+.
T Consensus       135 -------------------~~~~~~~~~v~~~~----------~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~  185 (337)
T d1gxra_         135 -------------------AELTSSAPACYALA----------ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG  185 (337)
T ss_dssp             -------------------EEEECSSSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             -------------------CCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             -------------------11111111111111----------1111111111111111111111111111111111111


Q ss_pred             E-EEEECCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf             9-999948998999995199499996688984049997313788889998835999987999799998699499997478
Q 001567          260 V-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG  338 (1052)
Q Consensus       260 v-~va~sp~~~llAsGs~Dg~V~vwd~~~~~~~~~~l~~~~~~~~~~h~g~V~~l~wSpDg~~Lasg~~Dg~i~vWs~~g  338 (1052)
                      + +++|++++..+++|+.||.|++|++.+ ++.+..+.         |.++|.+++|+|++..+++|+.|+.+++|++.+
T Consensus       186 v~~l~~s~~~~~~~~~~~d~~v~i~d~~~-~~~~~~~~---------~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         186 ASCIDISNDGTKLWTGGLDNTVRSWDLRE-GRQLQQHD---------FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTT-TEEEEEEE---------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEECCCC---------CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCC
T ss_conf             11012344432112235665532111111-00000246---------666157999715303000000256421111111


Q ss_pred             CEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCCCCEEEEECCCEEEEECCCCCEEEEE
Q ss_conf             85779854666673220367389888855056500236880588659999528964099992142465204699535667
Q 001567          339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ  418 (1052)
Q Consensus       339 ~~l~~tl~~~~~~~v~s~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~I~~~~~~k~~~s~s~d~~~~~w~  418 (1052)
                      ..... ...| ...++++.|+|++    +.++                                    +++.|+.+++|+
T Consensus       256 ~~~~~-~~~~-~~~i~~v~~s~~g----~~l~------------------------------------s~s~Dg~i~iwd  293 (337)
T d1gxra_         256 PDKYQ-LHLH-ESCVLSLKFAYCG----KWFV------------------------------------STGKDNLLNAWR  293 (337)
T ss_dssp             SCEEE-ECCC-SSCEEEEEECTTS----SEEE------------------------------------EEETTSEEEEEE
T ss_pred             CCCCC-CCCC-CCCCCEEEECCCC----CEEE------------------------------------EEECCCEEEEEE
T ss_conf             11000-0124-5654169998999----9999------------------------------------994899699998


Q ss_pred             EEECCCEEEEEECCCCCHHEEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEE-EEECC
Q ss_conf             6665855899706996500002202571002699867999992699999999589649-99935
Q 001567          419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR  481 (1052)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~w~~~~~p~~~~~h~~~I~~va~SpdG~~lavag~dG~i-iw~~~  481 (1052)
                      +..+..                    . ....|..+|++++|+|||++||+||.||.+ +|++.
T Consensus       294 ~~~~~~--------------------~-~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         294 TPYGAS--------------------I-FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             TTTCCE--------------------E-EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             CCCCCE--------------------E-EECCCCCCEEEEEEECCCCEEEEEECCCEEEEEEEE
T ss_conf             999979--------------------9-992699987999992799999999089969999778
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure