Citrus Sinensis ID: 001582

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHcHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccHHHHHHccccccccccHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccccc

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNckavrvlpriadcakNDRNAVLRARCCEYALLVLehwpdapeiqrsADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTwpersrrlfssfdPAIQRIINeedggmhrrhaspsvrergahlsftsqtstasnlsgygtSAIVAMdrssnlssgaslssGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGleisdkqnpstlrsssldlgvdppssrdppfpavvpasnddtnaFMVESTTsglnkgsnrnggmVLSDIITQIqaskdsgklsyhsnteslsslssystrrgseklqeRVSVEENDMREARrfvnphidrqyldasykdgnfrdshnsyipnfqrpllrkhgtgrmsasrrksfddsqlqlgemsnytdgpaslsdalseglspssdwcARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLAdiipscrkpfESYMERILPHVfsrlidpkelvrqpcsttldivsktysvdSLLPALLRSldeqrspkAKLAVIEFAISSLNKhamnsegsgnLGILKLWLAkltplvhdkntkLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQrlkssydpsdvvgtsseeGYAVASKKshyfgryssgsidsdggrkwssmqesnlmtgsmghamsdetKENLYQNfetganadvssktkdltgsntylegfstpridinglrdhlevsegaghnneippeldlnhhkpsaiktnsltdagpsipQILHLmcngndgsptskhGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVlsqydpfrclsVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRisqartgttidasq

MFIPVLFKLVVITVLVIaessdnciKTMLRNCKAVRVLPRIAdcakndrnavLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKtwpersrrlfssfdPAIQRIineedggmhrRHASPSVRERGAHLsftsqtstasnlsgYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRgleisdkqnpstLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTtsglnkgsnrnGGMVLSDIITQIQAskdsgklsyhsnteslsslssystrrgseklqervsveendmrearrfvnphidrqyLDASYKDGNFRDSHnsyipnfqrpllrkhgtgrmsasrrksfddsqlqLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTtldivsktysVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAlkqytprieVDLMNYLQSkkerqrlkssydpsdvvgtsseEGYAVAskkshyfgryssgsidsdggrkWSSMQESNLMTGSMGHAMSDETKENLYQNFETganadvssktkdltgsntylegfstpridiNGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVvlsqydpfrCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYAnrisqartgttidasq

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRssnlssgaslssglllsqakslNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLsyhsnteslsslssystrrgseKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ

*FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRII**********************************************************************************************************************************************************************I*********************************************************HIDRQYLDASY*********************************************************************DWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL*******AKLAVIEFAISSLNKHAM***GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL******************************************************************************************************YLEGFSTPRIDINGL*******************************************QILHLMCN***********ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDP***********************************************************************************************************************************************************************************************************************************************************************************************MSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE*SGNLGILKLWLAKLTP***********AAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVD**********************************************************************************************************************************************DLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT*******************

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDG****************************NLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQ*********************KVSAIESMLRGLEISDK*********************DPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQA**************************************ENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKH****************QLQLGEMSNYTDGPASLS**********SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKK*************************ASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ

MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEED****************************************************************************************************************************************************************************************************************************************D********SYIPNFQRP*L************************EMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEV*********************************************************************************************************************************************ELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************

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SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1049	2.2.26 [Sep-21-2011]
Q8RWY6		1439	CLIP-associated protein O	yes	no	0.989	0.721	0.746	0.0
A1A5K2		1456	CLIP-associating protein	N/A	no	0.186	0.134	0.325	1e-29
A1A5G0		1452	CLIP-associating protein	yes	no	0.186	0.134	0.33	2e-29
Q4U0G1		1460	CLIP-associating protein	N/A	no	0.177	0.127	0.325	2e-29
Q7Z460		1538	CLIP-associating protein	yes	no	0.186	0.127	0.33	5e-29
Q80TV8		1535	CLIP-associating protein	yes	no	0.186	0.127	0.33	5e-29
O75122		1294	CLIP-associating protein	no	no	0.192	0.156	0.312	3e-28
Q8BRT1		1286	CLIP-associating protein	no	no	0.192	0.157	0.312	3e-28
Q99JD4		1286	CLIP-associating protein	no	no	0.192	0.157	0.312	4e-28
Q6NYW6		1288	CLIP-associating protein	no	no	0.186	0.152	0.31	8e-27

>sp\|Q8RWY6\|CLASP_ARATH CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1	Back alignment and function desciption

 Score = 1570 bits (4066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/1074 (74%), Positives = 906/1074 (84%), Gaps = 36/1074 (3%)

Query: 2    FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 61
            FIPVLFKLVVITVLVIAES+DNCIKTMLRNCKA RVLPRIA+ AK+DRNA+LRARCCEYA
Sbjct: 372  FIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHDRNAILRARCCEYA 431

Query: 62   LLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSS 121
            LL LEHWPDAPEIQRS DLYEDLIRCCVADAMSEVR+TARMCYRMFAKTWP+RSRRLFSS
Sbjct: 432  LLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFAKTWPDRSRRLFSS 491

Query: 122  FDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSN 181
            FDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL GYGTSAIVAMDRSSN
Sbjct: 492  FDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPGYGTSAIVAMDRSSN 550

Query: 182  LSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLR 241
            LSSG SLSSGLLLSQ+K +NK +ERSLESVL +SKQKVSAIESMLRGL ISD+QNP+ LR
Sbjct: 551  LSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLRGLHISDRQNPAALR 610

Query: 242  SSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQI 301
            SSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSNRNGG+ LSDIITQI
Sbjct: 611  SSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSNRNGGLGLSDIITQI 669

Query: 302  QASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMREARRFVNPHIDR 358
            QASKDSG+ SY  N  +ES  + SS + +RGSE+  ER S+EE ND RE RRF+  H DR
Sbjct: 670  QASKDSGRSSYRGNLLSESHPTFSSLTAKRGSER-NERSSLEESNDAREVRRFMAGHFDR 728

Query: 359  QYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDG 418
            Q +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDSQLQ+G++SN+ DG
Sbjct: 729  QQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGDISNFVDG 788

Query: 419  PASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDP 478
            PASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FEKVMKLF +HLDDP
Sbjct: 789  PASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKVMKLFLRHLDDP 848

Query: 479  HHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY 538
            HHKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQPCS+TL+IVSKTY
Sbjct: 849  HHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTLEIVSKTY 908

Query: 539  SVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV 598
            SVDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN GILKLWLAKLTPL 
Sbjct: 909  SVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWLAKLTPLT 968

Query: 599  HDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNY 658
             DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALKQYTPRIEVDL+NY
Sbjct: 969  RDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRIEVDLLNY 1028

Query: 659  LQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQES 718
            +QSKKE+QR+K SYDPSD +GTSSEEGYA ASKK+ + GRYS GSIDSD GRKWSS QE 
Sbjct: 1029 MQSKKEKQRIK-SYDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRKWSSSQEP 1087

Query: 719  NLMTGSMGHAMSDETKENLYQNFETG---ANADVSSKTKDLT----GSNT---------- 761
             ++TG +G  +S  T+E LYQN  TG   A+  ++ K  D T    G N+          
Sbjct: 1088 TMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSISRTSPNGSS 1147

Query: 762  ----YLEGFSTPRIDINGLR----DHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTD 813
                 L+  S P ++ NGL     D LE      H NE+  ELDL H+  ++IK N+  +
Sbjct: 1148 ENIEILDDLSPPHLEKNGLNLTSVDSLE----GRHENEVSRELDLGHYMLTSIKVNTTPE 1203

Query: 814  AGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA 873
            +GPSIPQILH++   +    +SK   LQQLI+ASVAN+ S+WTKYFNQILT VLEVLDD 
Sbjct: 1204 SGPSIPQILHMINGSDGSPSSSKKSGLQQLIEASVANEESVWTKYFNQILTVVLEVLDDE 1263

Query: 874  DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 933
            D S++E+ALSLI+EMLK+QKD MEDSVEIVIEKLLHV+KD VPKVS EAE CLT VLSQY
Sbjct: 1264 DFSIKELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPKVSTEAEQCLTTVLSQY 1323

Query: 934  DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSA 993
            DPFRCLSVIVPLLVTEDEKTLV CINCLTKLVGRLSQEELM QL SFLPA+FEAFG+QSA
Sbjct: 1324 DPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQLSSFLPAVFEAFGSQSA 1383

Query: 994  DVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDA 1047
            DVRKTVVFCLVDIYIMLGKAFLPYLE LNSTQ+RLVTIYANRISQAR G  IDA
Sbjct: 1384 DVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARNGAPIDA 1437

Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. Promotes the stabilization of dynamic microtubules during mitosis. Regulates microtubule-cortex attachment, thereby contributing to self-organization of cortical microtubules and subsequent cell shape.
Arabidopsis thaliana (taxid: 3702)

>sp\|A1A5K2\|CLA1B_XENLA CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1	Back alignment and function description

>sp\|A1A5G0\|CLAP1_XENTR CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1	Back alignment and function description

>sp\|Q4U0G1\|CLA1A_XENLA CLIP-associating protein 1-A OS=Xenopus laevis GN=clasp1-a PE=2 SV=2	Back alignment and function description

>sp\|Q7Z460\|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1	Back alignment and function description

>sp\|Q80TV8\|CLAP1_MOUSE CLIP-associating protein 1 OS=Mus musculus GN=Clasp1 PE=1 SV=2	Back alignment and function description

>sp\|O75122\|CLAP2_HUMAN CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2	Back alignment and function description

>sp\|Q8BRT1\|CLAP2_MOUSE CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1	Back alignment and function description

>sp\|Q99JD4\|CLAP2_RAT CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=2 SV=1	Back alignment and function description

>sp\|Q6NYW6\|CLAP2_DANRE CLIP-associating protein 2 OS=Danio rerio GN=clasp2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1049
224069969		1426	predicted protein [Populus trichocarpa]	0.996	0.732	0.832	0.0
255560273		1384	conserved hypothetical protein [Ricinus	0.999	0.757	0.814	0.0
225437885		1440	PREDICTED: CLIP-associating protein-like	0.993	0.723	0.803	0.0
356505094		1440	PREDICTED: uncharacterized protein LOC10	0.996	0.725	0.793	0.0
356572317		1444	PREDICTED: uncharacterized protein LOC10	0.997	0.724	0.790	0.0
357510361		1169	CLIP-associating protein [Medicago trunc	0.996	0.893	0.766	0.0
356548119		1428	PREDICTED: uncharacterized protein LOC10	0.983	0.722	0.760	0.0
356537272		1436	PREDICTED: uncharacterized protein LOC10	0.990	0.723	0.756	0.0
147819117		1135	hypothetical protein VITISV_032909 [Viti	0.981	0.907	0.774	0.0
357510363		1156	CLIP-associating protein [Medicago trunc	0.983	0.892	0.755	0.0

>gi\|224069969\|ref\|XP_002303094.1\| predicted protein [Populus trichocarpa] gi\|222844820\|gb\|EEE82367.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1767 bits (4577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1059 (83%), Positives = 947/1059 (89%), Gaps = 14/1059 (1%)

Query: 1    MFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEY 60
            MFIP LFKLVVITVLVIAES+DNCIKTMLRNCK  RVLPRIADCAKNDR AVLRARCCEY
Sbjct: 371  MFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRAAVLRARCCEY 430

Query: 61   ALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFS 120
            ALL+LEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLF 
Sbjct: 431  ALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFM 490

Query: 121  SFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSS 180
            SFDP IQRI+NEEDGG+HRRHASPS+R+R A  SFT Q S AS++ GYGTSAIVAMDR+S
Sbjct: 491  SFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGTSAIVAMDRTS 550

Query: 181  NLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTL 240
            +LSSG SLSSGLLLSQAKSL K TERSLESVL+ASKQKV+AIESMLRGLE+SDKQNPS L
Sbjct: 551  SLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLELSDKQNPSAL 610

Query: 241  RSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQ 300
            RSSSLDLGVDPPSSRDPPFPA VPASN  TN+   EST SG+ KGSNRNGG+VLSDIITQ
Sbjct: 611  RSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNGGLVLSDIITQ 670

Query: 301  IQASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMREARRFVNPHID 357
            IQASKDS KLSY +N   ESL + SSYST+R    + ER SVEE ND+RE RRF NPH+D
Sbjct: 671  IQASKDSAKLSYRNNMAAESLPTFSSYSTKR----ISERGSVEEDNDIREPRRFANPHVD 726

Query: 358  RQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTD 417
            RQY+D  YKD N+RDSH+S+IPNFQRPLLRKH  GRMSA RRKSFDDSQL LGE+S+Y +
Sbjct: 727  RQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQLSLGEVSSYVE 786

Query: 418  GPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDD 477
            GPASLSDALSEGLSPSSDW ARV+AFNYL SLLQQGPKG+QEVIQNFEKVMKLFFQHLDD
Sbjct: 787  GPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKVMKLFFQHLDD 846

Query: 478  PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKT 537
            PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTL+IVSKT
Sbjct: 847  PHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLEIVSKT 906

Query: 538  YSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPL 597
            Y VD LLPALLRSLDEQRSPKAKLAVIEFA+SS NKHAMNSEGSGN GILKLWLAKLTPL
Sbjct: 907  YGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGILKLWLAKLTPL 966

Query: 598  VHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMN 657
            VHDKNTKLKEAAITCIISVY+H+DS AVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMN
Sbjct: 967  VHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMN 1026

Query: 658  YLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQE 717
            ++QSKKERQR KSSYDPSDVVGTSSEEGY  ASKKSHYFGRYS GS+DSDGGRKWSS QE
Sbjct: 1027 FVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSDGGRKWSSTQE 1086

Query: 718  SNLMTGSMGHAMSDETKENLYQNFETGANADV-SSKTKD---LTGSNTYLEGFSTPRID- 772
            S L++GS+G A  DET+ENLYQNFET +N DV SSK +D   + GS     G    R++ 
Sbjct: 1087 STLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLNLGSRPGRLEN 1146

Query: 773  -INGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 831
              NGL     ++ G GH+N +  ELDLN+HKP+A+K NSL D GPSIPQILHL+CNGND 
Sbjct: 1147 MDNGLNFEGLLTPGYGHDNNVLSELDLNNHKPAAVKINSLADTGPSIPQILHLICNGNDE 1206

Query: 832  SPT-SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK 890
            SPT SK GALQQLI+AS+AND S+W+KYFNQILTAVLEVLDD+DSS+RE+ LSLI EMLK
Sbjct: 1207 SPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVLEVLDDSDSSIRELTLSLIVEMLK 1266

Query: 891  NQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTED 950
            NQKD MEDS+EI IEKLLHVT+D VPKVSNEAEHCLTV LSQYDPFRCLSVIVPLLVTED
Sbjct: 1267 NQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLTVALSQYDPFRCLSVIVPLLVTED 1326

Query: 951  EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1010
            EKTLVTCINCLTKLVGRLSQEELM QLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML
Sbjct: 1327 EKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1386

Query: 1011 GKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ 1049
            GKAFLP+LE LNSTQLRLVTIYANRISQARTGT IDAS 
Sbjct: 1387 GKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDASH 1425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255560273\|ref\|XP_002521154.1\| conserved hypothetical protein [Ricinus communis] gi\|223539723\|gb\|EEF41305.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|225437885\|ref\|XP_002265367.1\| PREDICTED: CLIP-associating protein-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356505094\|ref\|XP_003521327.1\| PREDICTED: uncharacterized protein LOC100796697 [Glycine max]	Back alignment and taxonomy information

>gi\|356572317\|ref\|XP_003554315.1\| PREDICTED: uncharacterized protein LOC100820523 [Glycine max]	Back alignment and taxonomy information

>gi\|357510361\|ref\|XP_003625469.1\| CLIP-associating protein [Medicago truncatula] gi\|355500484\|gb\|AES81687.1\| CLIP-associating protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356548119\|ref\|XP_003542451.1\| PREDICTED: uncharacterized protein LOC100801377 [Glycine max]	Back alignment and taxonomy information

>gi\|356537272\|ref\|XP_003537153.1\| PREDICTED: uncharacterized protein LOC100775793 [Glycine max]	Back alignment and taxonomy information

>gi\|147819117\|emb\|CAN66676.1\| hypothetical protein VITISV_032909 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357510363\|ref\|XP_003625470.1\| CLIP-associating protein [Medicago truncatula] gi\|355500485\|gb\|AES81688.1\| CLIP-associating protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1049
TAIR\|locus:2061599		1439	CLASP "CLIP-associated protein	0.909	0.662	0.606	2.1e-297
ZFIN\|ZDB-GENE-040426-2343		1529	clasp2 "cytoplasmic linker ass	0.599	0.411	0.218	5.5e-44
UNIPROTKB\|O75122		1294	CLASP2 "CLIP-associating prote	0.591	0.479	0.241	6e-43
UNIPROTKB\|E7EW49		1514	CLASP2 "CLIP-associating prote	0.591	0.409	0.241	8.1e-43
UNIPROTKB\|E1BQ15		1540	CLASP2 "Uncharacterized protei	0.591	0.402	0.241	1.3e-42
MGI\|MGI:1923749		1286	Clasp2 "CLIP associating prote	0.224	0.182	0.294	1.4e-42
UNIPROTKB\|A1A5K2		1456	clasp1b "CLIP-associating prot	0.593	0.427	0.228	1.9e-42
UNIPROTKB\|G3N2Y5		1539	G3N2Y5 "Uncharacterized protei	0.220	0.150	0.306	2.3e-42
RGD\|619789		1286	Clasp2 "cytoplasmic linker ass	0.224	0.182	0.294	3.6e-42
UNIPROTKB\|Q99JD4		1286	Clasp2 "CLIP-associating prote	0.224	0.182	0.294	3.6e-42

TAIR\|locus:2061599 CLASP "CLIP-associated protein" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2855 (1010.1 bits), Expect = 2.1e-297, P = 2.1e-297
 Identities = 598/986 (60%), Positives = 722/986 (73%)

Query:     2 FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 61
             FIPVLFKLVVITVLVIAES+DNCIKTMLRNCKA RVLPRIA+ AK+DRNA+LRARCCEYA
Sbjct:   372 FIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHDRNAILRARCCEYA 431

Query:    62 LLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRRLFSS 121
             LL LEHWPDAPEIQRS DLYEDLIRCCVADAMSEVR+TARMCYRMFAKTWP+RSRRLFSS
Sbjct:   432 LLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFAKTWPDRSRRLFSS 491

Query:   122 FDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRXXX 181
             FDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL GYGTSAIVAMDR   
Sbjct:   492 FDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPGYGTSAIVAMDRSSN 550

Query:   182 XXXXXXXXXXXXXXXXXXXNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLR 241
                                NK +ERSLESVL +SKQKVSAIESMLRGL ISD+QNP+ LR
Sbjct:   551 LSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLRGLHISDRQNPAALR 610

Query:   242 SSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQI 301
             SSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSNRNGG+ LSDIITQI
Sbjct:   611 SSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSNRNGGLGLSDIITQI 669

Query:   302 QASKDSGKLXXXXXXXXXXX-XXXXXXXXXXXKLQERVSVEE-NDMREARRFVNPHIDRQ 359
             QASKDSG+                        +  ER S+EE ND RE RRF+  H DRQ
Sbjct:   670 QASKDSGRSSYRGNLLSESHPTFSSLTAKRGSERNERSSLEESNDAREVRRFMAGHFDRQ 729

Query:   360 YLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGP 419
              +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDSQLQ+G++SN+ DGP
Sbjct:   730 QMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQLQIGDISNFVDGP 789

Query:   420 ASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPH 479
             ASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FEKVMKLF +HLDDPH
Sbjct:   790 ASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKVMKLFLRHLDDPH 849

Query:   480 HKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYS 539
             HKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQPCS+TL+IVSKTYS
Sbjct:   850 HKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPCSSTLEIVSKTYS 909

Query:   540 VDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVH 599
             VDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN GILKLWLAKLTPL  
Sbjct:   910 VDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGILKLWLAKLTPLTR 969

Query:   600 DKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 659
             DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALKQYTPRIEVDL+NY+
Sbjct:   970 DKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQYTPRIEVDLLNYM 1029

Query:   660 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESN 719
             QSKKE+QR+KS YDPSD +GTSSEEGYA ASKK+ + GRYS GSIDSD GRKWSS QE  
Sbjct:  1030 QSKKEKQRIKS-YDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSDSGRKWSSSQEPT 1088

Query:   720 LMTGSMGHAMSDETKENLYQNFETGANA--DV-SSKTKDLTGSNTYLEGFSTPRIDINGL 776
             ++TG +G  +S  T+E LYQN  TG ++  D+ + K  D T ++      S  R   NG 
Sbjct:  1089 MITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQNSIS--RTSPNGS 1146

Query:   777 RDHLEVSEGAGHNNEIPPELD---LNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSP 833
              +++E+ +        PP L+   LN     +++     +    +  + H M      + 
Sbjct:  1147 SENIEILDDLS-----PPHLEKNGLNLTSVDSLEGRHENEVSREL-DLGHYMLTSIKVNT 1200

Query:   834 TSKHG-ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 892
             T + G ++ Q++     +D S  +       + + ++++ + ++   V     N++L   
Sbjct:  1201 TPESGPSIPQILHMINGSDGSPSSSK----KSGLQQLIEASVANEESVWTKYFNQILTVV 1256

Query:   893 KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEK 952
              +V++D    + E  L +  + +    +  E  + +V+ +          VP + TE E+
Sbjct:  1257 LEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKL--LHVSKDTVPKVSTEAEQ 1314

Query:   953 TLVTCIN------CLTKLVGRLSQEE 972
              L T ++      CL+ +V  L  E+
Sbjct:  1315 CLTTVLSQYDPFRCLSVIVPLLVTED 1340

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0009524 "phragmoplast" evidence=IDA

GO:0016049 "cell growth" evidence=RCA;IMP

GO:0050821 "protein stabilization" evidence=IMP

GO:0051010 "microtubule plus-end binding" evidence=IDA

GO:0043622 "cortical microtubule organization" evidence=IDA;IMP

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

ZFIN\|ZDB-GENE-040426-2343 clasp2 "cytoplasmic linker associated protein 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|O75122 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EW49 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BQ15 CLASP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1923749 Clasp2 "CLIP associating protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|A1A5K2 clasp1b "CLIP-associating protein 1-B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|G3N2Y5 G3N2Y5 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|619789 Clasp2 "cytoplasmic linker associated protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q99JD4 Clasp2 "CLIP-associating protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RWY6	CLASP_ARATH	No assigned EC number	0.7467	0.9895	0.7213	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1049
pfam12348		228	pfam12348, CLASP_N, CLASP N terminal	1e-39
pfam12348		228	pfam12348, CLASP_N, CLASP N terminal	0.001

>gnl\|CDD\|221541 pfam12348, CLASP_N, CLASP N terminal	Back alignment and domain information

 Score =  146 bits (371), Expect = 1e-39
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 2   FIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV-RVLPRIADCAKNDRNAVLRARCCEY 60
            +P L KL   T  +I+++++  +  +L N     R+  +    A  D+N   R     +
Sbjct: 95  LLPTLLKLCGDTKKIISQNANQAVADILSNVSYTPRLELQHISAALQDKNVQPREYSAIW 154

Query: 61  ALLVLEHWPD-APEIQRSA--DLYEDLIRCCVADAMSEVRSTARMCYRMFAKTWPERSRR 117
             ++L         I+     DLYE  ++  + DA   VR TAR  +  F + WP R++ 
Sbjct: 155 LKILLIRHGHHKSHIEHHGGLDLYEKSLKKGLEDANPGVRETARSTFWEFFRVWPARAKS 214

Query: 118 LFSSFDPAIQRIIN 131
           L SS DP +++ + 
Sbjct: 215 LLSSLDPNVRKALE 228

This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228

>gnl\|CDD\|221541 pfam12348, CLASP_N, CLASP N terminal	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1049
KOG2956		516	consensus CLIP-associating protein [General functi	100.0
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	99.84
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.82
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.79
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	99.76
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.39
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.3
KOG1242		569	consensus Protein containing adaptin N-terminal re	99.21
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.21
KOG1824		1233	consensus TATA-binding protein-interacting protein	99.05
KOG2933		334	consensus Uncharacterized conserved protein [Funct	98.9
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.85
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	98.75
KOG2933		334	consensus Uncharacterized conserved protein [Funct	98.72
KOG1824		1233	consensus TATA-binding protein-interacting protein	98.7
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.7
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	98.66
PTZ00429		746	beta-adaptin; Provisional	98.62
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	98.57
KOG2956		516	consensus CLIP-associating protein [General functi	98.51
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.48
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.38
KOG0212		675	consensus Uncharacterized conserved protein [Funct	98.38
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.32
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.25
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	98.23
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.21
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.06
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.04
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	98.02
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.93
PF05004		309	IFRD: Interferon-related developmental regulator (	97.91
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	97.9
PTZ00429		746	beta-adaptin; Provisional	97.89
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	97.87
PRK09687		280	putative lyase; Provisional	97.79
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	97.76
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.72
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	97.71
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.71
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.71
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.7
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.68
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	97.5
PRK09687		280	putative lyase; Provisional	97.42
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.17
KOG2032		533	consensus Uncharacterized conserved protein [Funct	97.16
KOG0211		759	consensus Protein phosphatase 2A regulatory subuni	97.08
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	97.08
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	97.05
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	96.87
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	96.85
PF05004		309	IFRD: Interferon-related developmental regulator (	96.84
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.76
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	96.75
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.72
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	96.71
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	96.65
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.64
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	96.6
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	96.56
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	96.56
KOG1243		690	consensus Protein kinase [General function predict	96.53
COG5240		898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.43
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	96.42
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	96.41
KOG2025		892	consensus Chromosome condensation complex Condensi	96.31
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	96.19
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	96.17
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	96.08
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	96.05
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	96.02
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.01
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	95.94
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	95.92
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	95.92
KOG2032		533	consensus Uncharacterized conserved protein [Funct	95.92
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	95.84
KOG1078		865	consensus Vesicle coat complex COPI, gamma subunit	95.81
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.8
cd03561		133	VHS VHS domain family; The VHS domain is present i	95.77
PF04118		307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	95.62
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.56
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	95.45
KOG1061		734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.38
KOG2149		393	consensus Uncharacterized conserved protein [Funct	95.24
KOG4524		1014	consensus Uncharacterized conserved protein [Funct	95.17
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	95.08
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	95.08
KOG2259		823	consensus Uncharacterized conserved protein [Funct	95.07
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	95.0
PF10274		183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.0
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	94.99
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	94.91
KOG4653		982	consensus Uncharacterized conserved protein [Funct	94.86
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	94.85
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	94.82
COG5096		757	Vesicle coat complex, various subunits [Intracellu	94.82
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	94.8
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	94.77
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	94.71
PF12231		372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.64
KOG2259		823	consensus Uncharacterized conserved protein [Funct	94.58
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	94.49
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	94.36
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	94.34
PF13251		182	DUF4042: Domain of unknown function (DUF4042)	94.17
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	94.06
KOG2137		700	consensus Protein kinase [Signal transduction mech	94.05
KOG1837		1621	consensus Uncharacterized conserved protein [Funct	94.02
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	93.99
PF04388		668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	93.71
PF12783		168	Sec7_N: Guanine nucleotide exchange factor in Golg	93.61
KOG0392		1549	consensus SNF2 family DNA-dependent ATPase domain-	93.46
COG5096		757	Vesicle coat complex, various subunits [Intracellu	93.37
TIGR02270		410	conserved hypothetical protein. Members are found	93.36
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	93.35
KOG0803		1312	consensus Predicted E3 ubiquitin ligase [Posttrans	93.32
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	93.27
KOG1087		470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	93.14
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	93.0
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	92.94
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	92.52
KOG1060		968	consensus Vesicle coat complex AP-3, beta subunit	92.28
KOG2149		393	consensus Uncharacterized conserved protein [Funct	92.08
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.08
TIGR02270		410	conserved hypothetical protein. Members are found	92.01
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.99
KOG0168		1051	consensus Putative ubiquitin fusion degradation pr	91.82
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	91.67
cd03561		133	VHS VHS domain family; The VHS domain is present i	91.44
cd03568		144	VHS_STAM VHS domain family, STAM subfamily; member	91.35
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	91.04
cd00197		115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	90.97
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	90.84
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	90.83
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	90.63
COG1413		335	FOG: HEAT repeat [Energy production and conversion	90.41
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	90.39
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.18
cd03565		141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	90.11
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	89.89
COG1413		335	FOG: HEAT repeat [Energy production and conversion	89.88
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	89.22
PF10521		282	DUF2454: Protein of unknown function (DUF2454); In	89.21
PF00790		140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.07
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.07
cd03567		139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	88.96
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	88.91
PF08623		169	TIP120: TATA-binding protein interacting (TIP20);	88.9
cd03572		122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.9
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.77
COG5064		526	SRP1 Karyopherin (importin) alpha [Intracellular t	88.37
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	88.3
KOG2137		700	consensus Protein kinase [Signal transduction mech	87.79
PF05536		543	Neurochondrin: Neurochondrin	87.69
PLN03076		1780	ARF guanine nucleotide exchange factor (ARF-GEF);	87.67
PF11698		119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	87.51
KOG2549		576	consensus Transcription initiation factor TFIID, s	87.47
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	87.28
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	87.22
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	87.01
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	86.79
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	86.77
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	86.74
KOG2025		892	consensus Chromosome condensation complex Condensi	86.7
cd03569		142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.49
KOG1077		938	consensus Vesicle coat complex AP-2, alpha subunit	86.32
KOG4224		550	consensus Armadillo repeat protein VAC8 required f	86.1
KOG1967		1030	consensus DNA repair/transcription protein Mms19 [	85.97
PF08161		198	NUC173: NUC173 domain; InterPro: IPR012978 This is	85.89
PF11640		155	TAN: Telomere-length maintenance and DNA damage re	85.71
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	85.67
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	85.61
KOG4653		982	consensus Uncharacterized conserved protein [Funct	85.36
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	85.23
KOG2062		929	consensus 26S proteasome regulatory complex, subun	85.12
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	85.02
PF12074		339	DUF3554: Domain of unknown function (DUF3554); Int	84.97
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	84.75
PF14664		371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	84.68
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	84.51
KOG1243		690	consensus Protein kinase [General function predict	84.32
smart00288		133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	84.24
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	84.22
KOG4535		728	consensus HEAT and armadillo repeat-containing pro	83.06
KOG1943		1133	consensus Beta-tubulin folding cofactor D [Posttra	82.52
KOG1949		1005	consensus Uncharacterized conserved protein [Funct	82.26
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	82.17
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	81.83
PF11640		155	TAN: Telomere-length maintenance and DNA damage re	81.68
PF12765		42	Cohesin_HEAT: HEAT repeat associated with sister c	81.56
KOG2160		342	consensus Armadillo/beta-catenin-like repeat-conta	81.28
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	80.96
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	80.72
PF13001		501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	80.42
smart00802		107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	80.37
KOG0946		970	consensus ER-Golgi vesicle-tethering protein p115	80.13
PF08713		213	DNA_alkylation: DNA alkylation repair enzyme; Inte	80.08

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=5.3e-43  Score=388.08  Aligned_cols=506  Identities=24%  Similarity=0.356  Sum_probs=366.6

Q ss_pred             HHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhc-
Q 001582          439 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI-  517 (1049)
Q Consensus       439 R~egL~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~aL~tL~~l~~~~~~~~~~~l~~lL~~ll~klg-  517 (1049)
                      ..+|...|..++..-....    .+++.+...+.+.+.+.+-+.   .|+++..++..+-+.+..|+..-+-.+|.|.| 
T Consensus         2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~---~l~~~S~~~rt~~srls~w~~l~l~k~~~k~g~   74 (516)
T KOG2956|consen    2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTL---VLETISIFVKTHYSRLSNWLKLALGKLFAKKGA   74 (516)
T ss_pred             cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhccccee---eeehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777776544222    356777788888787766554   34999999988889999999999999999996 


Q ss_pred             CCchhhhHHHHHHHHHHHhhcCCcchHHHHHHhhccC---CCHHHHHHHHHHHHHHhhhhccCCCCCCChhhHHHHHHhH
Q 001582          518 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL  594 (1049)
Q Consensus       518 D~k~~vR~~a~~~L~~~~e~~~~d~~l~~L~r~l~~~---~~pkvk~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  594 (1049)
                      +....+......+...+...|++..|+. +..++.++   ..||.+...++|++..+.+|. ......++++++..+.++
T Consensus        75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~-~~g~s~~t~~~~~s~rkm  152 (516)
T KOG2956|consen   75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYP-ERGTSPNTKETKAAIRKM  152 (516)
T ss_pred             HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhccccccc-ccCCCCCCCcchhhhhhc
Confidence            8898899999999999999999999999 88888875   479999999999998888874 333345678899999999


Q ss_pred             ccccCC-CC-HHHHHHHHHHHHHHHHhcCchhHHHHhhcCCHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhhccCCCC
Q 001582          595 TPLVHD-KN-TKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY  672 (1049)
Q Consensus       595 ~~~~~D-kn-~~VR~aA~~~L~~ly~h~~~~~~~~~l~~L~~~~~~~~~~aL~~~~p~~~~~l~~~l~~~~~~~~~~s~~  672 (1049)
                      .+|+.| +. .-+-......|-++|..+ -..|......|++.+.+-...-+               +..+.-   ++++
T Consensus       153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~---------------~~n~~~---~~~~  213 (516)
T KOG2956|consen  153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSL---------------QSNGID---NGSP  213 (516)
T ss_pred             cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHH---------------HhhCcC---CCCC
Confidence            999998 32 222223333444444433 12233333335555443332212               222111   0011


Q ss_pred             CCCCCC-CCCCcccccccccCCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCchhhhhhhhhccccCCCccCCc
Q 001582          673 DPSDVV-GTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS  751 (1049)
Q Consensus       673 ~~~~~~-~~~s~~~~~~~~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~e~~~q~~~~~~~~~~~~  751 (1049)
                      ++.... +..++..+...+-        ++    ++.+              .++..+..-+.+      +.+...+...
T Consensus       214 ~~~a~~e~~~~~~n~~~~~~--------~~----P~~~--------------~~~~~~~~~~~~------~~~~~n~~~~  261 (516)
T KOG2956|consen  214 SPSAEKERFDSSNNKPSLPL--------SP----PEEE--------------KPGLGSTKVNPE------ELRLSNETER  261 (516)
T ss_pred             CchhhhcccccccccccccC--------CC----hhhc--------------ccCCCccccCcc------ccccccchhh
Confidence            110000 0000000000000        00    0000              000000000000      0000000000


Q ss_pred             ccccCCCCCCCcCCCCCCcccccccccccccccccCCCCCCCCccccCCCCCcccccCCcCCCCCCHHHHHHHhccCCCC
Q 001582          752 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG  831 (1049)
Q Consensus       752 ~~~d~~~~~~~~~~~~~Pr~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~lL~~l~~~~~~  831 (1049)
                      +.+.+        +..                  |..+.+.     ++         ....++.+.|.++|++++++ ++
T Consensus       262 ~~~l~--------e~~------------------~~~~~~~-----~~---------p~~~~~~~~v~~~l~~~~g~-e~  300 (516)
T KOG2956|consen  262 LSRLE--------EYS------------------TDDSMDQ-----LT---------PNSVDQSALVADLLKEISGS-ER  300 (516)
T ss_pred             hhhch--------hhc------------------cCcchhh-----CC---------CCCcchhHHHHHHHHhccCc-cc
Confidence            00000        000                  0000000     00         11223556688899998877 34


Q ss_pred             ChhHHHHHHHHHHHHHhcCCccchHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 001582          832 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV  910 (1049)
Q Consensus       832 ~~~eR~~aL~~L~~li~~~~~~~w~~~f~~lL~~Ll~~L~D-~n~~vr~~AL~~L~~L~~~~~~~~~~~~e~lLp~Ll~~  910 (1049)
                       .+++++||.+|..++.++++.+|.+||++||..++++|.| .+..+++.||++|++||++|+.+|.++.|+.+.++|++
T Consensus       301 -a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  301 -ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             -hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence             7899999999999999999999999999999999999999 78889999999999999999999999999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHHHhhcCchhhHHhhhhhhcccchhHHHHHHHHHHHHHhhcCHHHHHhhhhhHHHHHHHHhcC
Q 001582          911 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN  990 (1049)
Q Consensus       911 ~~Ds~~~Vr~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~t~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~~~D  990 (1049)
                      .+|++++|.+.|++++..++..++|.+|+.++.|+|.+.++++.++||||++++++++..++|...+++|+|+++++|+.
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S  459 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS  459 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence            99999999999999888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh-hhHHHhhhcCChhhHHHHHHHHHHhhhcccCCCCC
Q 001582          991 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1046 (1049)
Q Consensus       991 ~~seVRKaAv~clv~l~~~lG-e~l~p~l~~L~~s~~kLL~~yi~R~~~~r~~~~~~ 1046 (1049)
                      +++.|||+||||||++|.++| +++.|||.+|+.++++||++||+|+++.++|+++|
T Consensus       460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~  516 (516)
T KOG2956|consen  460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD  516 (516)
T ss_pred             chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999 79999999999999999999999999999999876

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2956 consensus CLIP-associating protein [General function prediction only]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>PF13251 DUF4042: Domain of unknown function (DUF4042)	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1837 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor	Back alignment and domain information

>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal	Back alignment and domain information

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]	Back alignment and domain information

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>TIGR02270 conserved hypothetical protein	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)	Back alignment and domain information

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG1413 FOG: HEAT repeat [Energy production and conversion]	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []	Back alignment and domain information

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins	Back alignment and domain information

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []	Back alignment and domain information

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF05536 Neurochondrin: Neurochondrin	Back alignment and domain information

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional	Back alignment and domain information

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)	Back alignment and domain information

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []	Back alignment and domain information

>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs)	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>KOG1243 consensus Protein kinase [General function prediction only]	Back alignment and domain information

>smart00288 VHS Domain present in VPS-27, Hrs and STAM	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]	Back alignment and domain information

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs)	Back alignment and domain information

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion	Back alignment and domain information

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3	Back alignment and domain information

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1	Back alignment and domain information

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1049
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-27
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-19
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-08
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-05
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	3e-24
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	8e-14
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-10
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-09
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-08
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	7e-08
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-07
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-05
2iw3_A		986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-08
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-07
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	1e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	2e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	7e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	5e-04
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	5e-09
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	2e-08
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	8e-09
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	2e-08
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	5e-06
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-04
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	4e-04
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-08
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	3e-08
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	1e-04
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	2e-04
2db0_A		253	253AA long hypothetical protein; heat repeats, hel	1e-06
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	2e-06
1qgr_A		876	Protein (importin beta subunit); transport recepto	7e-06
1qgr_A		876	Protein (importin beta subunit); transport recepto	4e-05
1qgr_A		876	Protein (importin beta subunit); transport recepto	8e-05

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

 Score =  111 bits (279), Expect = 1e-27
 Identities = 38/245 (15%), Positives = 93/245 (37%), Gaps = 15/245 (6%)

Query: 411 EMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKL 470
           ++ +  D  + +     + L     W  R  +   L  LL   PK        +  ++  
Sbjct: 5   DLLDPVDILSKMPKDFYDKLE-EKKWTLRKESLEVLEKLLTDHPK---LENGEYGALVSA 60

Query: 471 FFQHL-DDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCST 529
             + +  D +  +   A   LA +     K F +Y    +P +  +  + K  V      
Sbjct: 61  LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120

Query: 530 TLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKL 589
            +D +  + S+++   +++ SL   ++P  K     F   +L +       + N  +LKL
Sbjct: 121 AIDAIYASTSLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPT---ALNKKLLKL 176

Query: 590 WLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRA-LKQYT 648
               L   +++ +  +++++   + ++       AV   +  +     + L+ A +K+  
Sbjct: 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV-----DPLKMAKIKECQ 231

Query: 649 PRIEV 653
            + E+
Sbjct: 232 EKAEI 236

PyMOL of 2qk2

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230	Back alignment and structure

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1049
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-13
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-12
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-11
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-10
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-10
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-09
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-07
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-06
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-08
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-06
d1b3ua_		588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-05
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-07
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-07
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-06
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-05
d2vglb_		579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-07
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-07
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-06
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-06
d1ibrb_		458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-04
d1qgra_		876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	9e-06
d2vgla_		584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-05

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 6e-13
 Identities = 99/999 (9%), Positives = 250/999 (25%), Gaps = 96/999 (9%)

Query: 36   RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 95
            ++  R+        +  ++    +    +L        +          +   +      
Sbjct: 130  KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG--GLLVNFHPSILTCLLPQLTSPRLA 187

Query: 96   VRSTARMCYRMFAKTWPERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRE--RGAHL 153
            VR    +       +       +F      +   +++ D     R     +    R A  
Sbjct: 188  VRKRTIIALGHLVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 154  SFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLN 213
                       L     +      R   + +  S          +   K     + +++N
Sbjct: 245  RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF--------VRRCPKEVYPHVSTIIN 296

Query: 214  ASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAF 273
               + ++   +     E  D+           D G D   S D      V  +       
Sbjct: 297  ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 356

Query: 274  MVESTTSGLNKGSNRNGGMVLSDIITQIQASKDS-GKLSYHSNTESLSSLSSYSTRRGSE 332
            +V +    L +        V   +I++ +  +++     +H+    L       +     
Sbjct: 357  VVSTRHEMLPEFYK----TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDP 412

Query: 333  KLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTG 392
               E+       ++     +   + +Q  + S K      +  + + N     L +H   
Sbjct: 413  DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472

Query: 393  RMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQ 452
             +        D                             SS    ++ A + L  +L  
Sbjct: 473  LVPGIIFSLND----------------------------KSSSSNLKIDALSCLYVILCN 504

Query: 453  GPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLAD-------IIPSCRKPFESYM 505
                 Q    + + ++      + DP +K+   AL            +          Y+
Sbjct: 505  HSP--QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 562

Query: 506  ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSV-DSLLPALLRSLDEQRSPKAKLAVI 564
            + +      RL                +     ++ D+L   L  +L             
Sbjct: 563  KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR 622

Query: 565  EFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTA 624
               + +L   A +        +L   +  L   +      LK   ++ +  +  +Y  + 
Sbjct: 623  LTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL 682

Query: 625  VLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTS-SE 683
                                        +D +  L S+ +    + +      +      
Sbjct: 683  T--------------------AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 722

Query: 684  EGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFET 743
                ++    +         +   G           L+     +    +    L     +
Sbjct: 723  SLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 782

Query: 744  GANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKP 803
             + A    ++             + P+     +   ++  + +   + I           
Sbjct: 783  QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSI------RLLAL 836

Query: 804  SAIKTNSLTDAGPSIPQILH-LMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQI 862
             ++             ++   ++   +  S   K  A   L   SV N          + 
Sbjct: 837  LSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLP--------EY 888

Query: 863  LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEA 922
            L  VL+ +         +  SL   +       ++  VE +   LL   + A     N  
Sbjct: 889  LPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVV 948

Query: 923  EHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 982
              CL   L+  DP   L  +   L++       + +  +   +     + +   L + + 
Sbjct: 949  AECLGK-LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISD-HPQPIDPLLKNCIG 1006

Query: 983  ALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERL 1021
               +   +   +VR+  +                 L+ +
Sbjct: 1007 DFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

PyMOL of d1u6gc_

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1049
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.87
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.86
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.84
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.8
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.74
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.72
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.64
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	99.64
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.59
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.55
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.28
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.24
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	98.97
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.75
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.37
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.37
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.31
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.29
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.1
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.62
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.55
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	97.23
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	96.87
d1ujka_		145	ADP-ribosylation factor binding protein Gga1 {Huma	96.84
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1mhqa_		143	ADP-ribosylation factor binding protein Gga2 {Huma	96.72
d1dvpa1		145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	96.71
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	96.71
d1juqa_		151	ADP-ribosylation factor binding protein Gga3 {Huma	96.59
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.21
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.08
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.7
d1elka_		153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	94.24
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	80.85

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-16  Score=124.75  Aligned_cols=178  Identities=15%  Similarity=0.159  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf             2589999999999984089500488699999999999428898899999999999998414-536789999999999991
Q 001582          833 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVT  911 (1049)
Q Consensus       833 ~~~r~~aL~~L~~li~~~~~~~~~~~f~~lL~~Ll~~L~D~n~~Vr~~AL~~L~~L~~~~~-~~~~~~~e~iLp~Ll~~~  911 (1049)
                      ++.|.+|...|..+...        +....+..++..+... ...+...|..|.+++...+ ..+.+|.+.+++.|+...
T Consensus       867 ~~vr~aAa~aLg~l~~~--------~~~~~lp~il~~l~~~-~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~  937 (1207)
T d1u6gc_         867 EEVKSAASYALGSISVG--------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC  937 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHH--------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999976--------2888759999987247-35899999999999985455546878999999999881


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             89937799999999999994129102577521320056336798999999999952198899956666999999982599
Q 001582          912 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ  991 (1049)
Q Consensus       912 ~Ds~~~V~~aA~~~l~~i~~~~~p~~~l~vL~p~l~s~~~~~~~~al~~L~~lie~~~~~~l~~~L~~iip~L~~~l~D~  991 (1049)
                      .+....+|..+-+|+..++. ..|..+++.|...+.+.++.++..++..+..++...+ .....++..++|.+...+.|.
T Consensus       938 ~~~~~~vr~~~a~~lg~L~~-~~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~-~~~~~~l~~li~~ll~~l~d~ 1015 (1207)
T d1u6gc_         938 ECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPLLKNCIGDFLKTLEDP 1015 (1207)
T ss_dssp             CCSSTTHHHHHHHHHHHHHH-SSGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC-CTHHHHHHHHSTTTHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCC
T ss_conf             79718799999999998870-2789999999998579999999999999999998665-546789999999999986799


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             978999999999999999645588841049
Q 001582          992 SADVRKTVVFCLVDIYIMLGKAFLPYLERL 1021 (1049)
Q Consensus       992 ~seVRKAAv~clV~l~~~lGe~i~p~l~~L 1021 (1049)
                      +.+||.+|+.|+..+...-++-+.||++.+
T Consensus      1016 ~~~vR~~al~~l~~~~~~~p~li~~~l~~l 1045 (1207)
T d1u6gc_        1016 DLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045 (1207)
T ss_dssp             STHHHHHHHHHHHHHHHHCGGGTGGGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf             989999999999999984869899999999

PyMOL of d1u6gc_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure