Citrus Sinensis ID: 001596

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105

MSDSKPSKTKNKEDVELLKSDIASFASSLGLSSASAASSGFNDSDFRKTGPIKPQKKFSKNNEKGGAQQEPSNTQKPNIAKFNKTNKKPKPDKKFVKPQKHNDNDKTHFEQELREEMEKSNSKPVPKAPVLTLESGANHDKYKKMPKLPLVKAGNLGVWYVDAKELEDKVLGGEEKSNSKRVVDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTKKPKKKKKKKGAEDEAAEELFDVDGDDYEVEGGDESDNEEIDNMLDSTDLSLVGDGDYDYDDLDKVADEDDDDLVGDASDLEMGAPDDSAEREDFDTNYFSHSDDDDDNVQLNIGAEDDGSDEGSKLGRRKRKRKSHKKAGATPFASLEDYQHLLDDNDPSEMKSAGEKKLNLKKKRMPSM

cccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHcccccccccHHHHHHHHcccccccc

ccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHccccccccccccccccHHccccccccccHHcccHHHccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHccccccEEEEEEHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHcHHHHHcccccccccHHHHccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHccccccHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHcHHHHHHHHHHHcccccccccccccccccHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccHHHcccccccccHHHHcccccccccccccccccccccccccccccHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccc

msdskpsktknkeDVELLKSDIASFASslglssasaassgfndsdfrktgpikpqkkfsknnekggaqqepsntqkpniakfnktnkkpkpdkkfvkpqkhndndkTHFEQELREEMeksnskpvpkapvltlesganhdkykkmpklplvkagnlgVWYVDAKEledkvlggeeksnskrvvDLKYVERKRELGERLLWQYVsdyegsrgqtgdiKMLAATQrsgtaadkvSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFvssllpdrklktlvqrpldnlpetkdgySLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKlgdpqnkgasnadfhlsnlladhpnmkAVVINEVdsflfrphlglrakYHAVNFLSQIrlshkgdgpkVAKRLIDVYFALFKVLITeagagdkmdknsktgnkhistfskksqlkispephieLDSRILSALLMGVNrafpyvssneaddiievQTPMLFKLVHSKNFNVAVQALMLLDKissknhivsDRFYRALYSKLLlpaamnssKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLqqppqyacgCLFLLSEvlkarpplwnmvlqnesvdedLEHFEDVVeetdnepsdaskteendvklvkrtddaksdsessedediptsdseedvsdqpeelFIRDNskdlqkskapshhvpqpptssksslpggynprhrepsycnadhVSWWELMVLASHvhpsvstmagTLLSGAnivyngnplsdLTLTAFLDKfmekkpkpttwhggsqiepakkldmnhQLIGQEILslaevdvppedlvFHKFYMNkvnttkkpkkkkkkkgaEDEAAEElfdvdgddyeveggdesdneeidnmldstdlslvgdgdydyddldkvadeddddlvgdasdlemgapddsaeredfdtnyfshsdddddnvqlnigaeddgsdegsklgrrkrkrkshkkagatpfaslEDYQhllddndpsemksAGEKKLNLKKKRMPSM

msdskpsktknkedVELLKSDIASFASSLGLSSASaassgfndsdfrktgpikpqkkfsknnekggaqqepsntqkpniakfnktnkkpkpdkkfvkpqkhndndkTHFEQELREemeksnskpvpkapVLTLesganhdkykkmpklplvkagNLGVWYVDAKELedkvlggeeksnskrvvdlkyverKRELGERLLWQYVSdyegsrgqtgdIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELfvssllpdrKLKTlvqrpldnlpetkdgysLLLFWYYEEFLKQRYERFVLALEessrdvlpvlKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITeagagdkmdknsktgnkhistfskksqlkispEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVeetdnepsdaskteendvklvkrtddaksdsessedediptsdseedvsdqpeELFIRDNSKDLQKSkapshhvpqpptssksslpggYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKfymnkvnttkkpkkkkkkkgaedeaaeelfdvdgddyeVEGGDESDNEEIDNMLDSTDLSLVGDGDYDYDDLDKVADEDDDDLVGDASDlemgapddsaereDFDTNYFshsdddddnVQLNigaeddgsdegsklgrrkrkrkshkkagatpfasledyQHLLDDndpsemksagekklnlkkkrmpsm

MSDSKPSKTKNKEDVELLKSDIasfasslglssasaassgfNDSDFRKTGPIKPQKKFSKNNEKGGAQQEPSNTQKPNIAkfnktnkkpkpdkkfvkpqkHNDNDKTHFEQELREEMEKSNSKPVPKAPVLTLESGANHDKYKKMPKLPLVKAGNLGVWYVDAKELEDKVLGGEEKSNSKRVVDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRllqvvlqqppqYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTddaksdsessedediptsdseedVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTkkpkkkkkkkGAEDEAAEELFdvdgddyeveggdesdNEEIDNMLDSTdlslvgdgdydyddldkvadeddddlvgdasdleMGAPDDSAEREDFDTNYFSHSDDDDDNVQLNIGAEDDGSDEgsklgrrkrkrkshkkAGATPFASLEDYQHLLDDNDPSEMKSAGEKKLNLKKKRMPSM

**************************************************************************************************************************************************KLPLVKAGNLGVWYVDAKELEDKVL*********RVVDLKYVERKRELGERLLWQYVSDYEGSR***GDIKMLA*******AADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTS*******LLSALV**************DFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEA**********************************ELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQN***************************************************************************************************************YCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFME*******************LDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNK*****************************************************************************************************************************************************************************************

***********************SFASSL****************************************************************************************************************************GNLGVWYVDAKE*************************KRELGERLLWQ*********************QRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLD*****KDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVL*******************************************ILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFE*********************************************DS*EDVSDQP*************************************NPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGAN**YNGNPLSDLTLTAFLDKFM*******************************ILSLAEVDVPPEDLVFHKF**********************************************************************************************************************************************************SLEDYQHLL**************************

************EDVELLKSDIASFASS**************DSDFRKTGPIKPQKKF****************QKPNIAKFNKTNKKPKPDKKFVKPQKHNDNDKTHFE***************PKAPVLTLESGANHDKYKKMPKLPLVKAGNLGVWYVDAKELEDKVLGGEEKSNSKRVVDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAA********DKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFED******************DVKLVK******************************EELFIRDNSK*****************************RHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNT*****************AEELFDVDGDDYEVEGGDESDNEEIDNMLDSTDLSLVGDGDYDYDDLDKVADEDDDDLVGDASDLEMGAPDDSAEREDFDTNYFSHSDDDDDNVQLNIGAED***********************ATPFASLEDYQHLLDDNDPSEMKSAGEKKL**********

********************D*ASFASSLG****************************************************************************************************************KKMPKLPLVKAGNLGVWYVDAKELEDKVLGGEEKSNSKRVVDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEA*******************************PHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQN*****************************************************************************************************GYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKP*******************QLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTKK***********************************************************************************************************************************************ASLEDYQHLLDDN***********************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSDSKPSKTKNKEDVELLKSDIASFASSLGLSSASAASSGFNDSDFRKTGPIKPQKKFSKNNEKGGAQQEPSNTQKPNIAKFNKTNKKPKPDKKFVKPQKHNDNDKTHFEQELREEMEKSNSKPVPKAPVLTLESGANHDKYKKMPKLPLVKAGNLGVWYVDAKELEDKVLGGEEKSNSKRVVDLKYVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQxxxxxxxxxxxxxxxxxxxxxPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTKKPKKKKKKKGAEDEAAEELFDVDGDDYEVEGGDESDNEEIDNMLDSTDLSLVGDGDYDYDDLDKVADEDDDDLVGDASDLEMGAPDDSAEREDFDTNYFSHSDDDDDNVQLNIGAEDDGSDEGSKLGRRKRKRKSHKKAGATPFASLEDYQHLLDDNDPSEMKSAGEKKLNLKKKRMPSM

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1048	2.2.26 [Sep-21-2011]
Q03701		1054	CCAAT/enhancer-binding pr	yes	no	0.686	0.682	0.340	1e-114
P53569		1052	CCAAT/enhancer-binding pr	yes	no	0.714	0.711	0.323	1e-112
O36021		860	Uncharacterized protein C	yes	no	0.608	0.741	0.315	2e-77
Q19753		953	Uncharacterized protein F	yes	no	0.591	0.650	0.288	4e-63
Q12176		1025	Ribosome biogenesis prote	yes	no	0.410	0.419	0.349	5e-63
Q8VI84		807	Nucleolar complex protein	no	no	0.042	0.055	0.466	3e-05
Q91Y26		800	Nucleolar complex protein	no	no	0.042	0.056	0.466	4e-05
Q8WTT2		800	Nucleolar complex protein	no	no	0.048	0.063	0.431	6e-05
Q5XGZ8		795	Nucleolar complex protein	N/A	no	0.042	0.056	0.466	0.0001
Q5R952		800	Nucleolar complex protein	no	no	0.048	0.063	0.431	0.0001

>sp\|Q03701\|CEBPZ_HUMAN CCAAT/enhancer-binding protein zeta OS=Homo sapiens GN=CEBPZ PE=1 SV=3	Back alignment and function desciption

 Score =  414 bits (1065), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 293/861 (34%), Positives = 448/861 (52%), Gaps = 142/861 (16%)

Query: 219  LAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFV 278
            + A   SGT  D+++A  +++ D+ +  L+ ++ L+ +V  K  K+  L   +  KEL +
Sbjct: 235  MKAIVSSGTLGDRMAAMILLIQDDAVHTLQFVETLVNLVKKKGSKQQCLMALDTFKELLI 294

Query: 279  SSLLPD-RKLKTLVQRPLDNLPETKDGYS-----LLLFWYYEEFLKQRYERFVLALEESS 332
            + LLPD RKL+   QRP D L +   G        L+ WY+E  LK     FV  LE  S
Sbjct: 295  TDLLPDNRKLRIFSQRPFDKLEQLSSGNKDSRDRRLILWYFEHQLKHLVAEFVQVLETLS 354

Query: 333  RDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHP 392
             D L   KT+AL + + LL +KPE+E  LL  +VNKLGDPQN+ A+ A   L  LL  HP
Sbjct: 355  HDTLVTTKTRALTVAHELLCNKPEEEKALLVQVVNKLGDPQNRIATKASHLLETLLCKHP 414

Query: 393  NMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVL 452
            NMK VV  EV+  LFR ++  +A+Y+A+ FL+Q+ LSH  +  ++A +LI VYF  F+  
Sbjct: 415  NMKGVVSGEVERLLFRSNISSKAQYYAICFLNQMALSH--EESELANKLITVYFCFFRTC 472

Query: 453  ITEAGAGDKMDKNSKTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVS 512
            + +                                   +++S++LSALL GVNRA+PY  
Sbjct: 473  VKKK----------------------------------DVESKMLSALLTGVNRAYPY-- 496

Query: 513  SNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPA 572
            S   DD +  Q   LFK++H  NFN +VQALMLL ++ +    +SDR+Y ALY K+L P 
Sbjct: 497  SQTGDDKVREQIDTLFKVLHIVNFNTSVQALMLLFQVMNSQQTISDRYYTALYRKMLDPG 556

Query: 573  AMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKAR 632
             M  SK  MF+ L+++++K D+ L+RV AF KRLLQV  QQ P + CG L+L+SE+LKA+
Sbjct: 557  LMTCSKQAMFLNLVYKSLKADIVLRRVKAFVKRLLQVTCQQMPPFICGALYLVSEILKAK 616

Query: 633  PPLWNMVLQNESVDEDLEHFEDVVEETDNEP-SDASKTEENDVKLVKRTDDAKSDSESSE 691
            P L +  L +    +D E+F D  ++ D E  +DA K  E    +VK+ +          
Sbjct: 617  PGLRSQ-LDDHPESDDEENFIDANDDEDMEKFTDADKETE----IVKKLE---------T 662

Query: 692  DEDIPTSDSEEDVSDQPEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGG-----YN 746
            +E +P +D E   + +PE               A   H          +L GG     Y+
Sbjct: 663  EETVPETDVE---TKKPE--------------VASWVHF--------DNLKGGKQLNKYD 697

Query: 747  PRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLD 806
            P  R P +C A++ S WEL  L+ H HPSV+  A T+L G  I Y+G+PL D TL  FLD
Sbjct: 698  PFSRNPLFCGAENTSLWELKKLSVHFHPSVALFAKTILQGNYIQYSGDPLQDFTLMRFLD 757

Query: 807  KFMEKKPKPTTWHGGSQ------IEPAKK---LDMNHQLI-GQEILSLAEVDVPPEDLVF 856
            +F+ + PKP   H G +      ++P +K    D+ H  +  +E L+  E  +P +++ F
Sbjct: 758  RFVYRNPKP---HKGKENTDSVVMQPKRKHFIKDIRHLPVNSKEFLAKEESQIPVDEVFF 814

Query: 857  HKFYMNKVNTTKKPKKKKKKKGAEDEA--------AEELFDVDGDDYEVEGGDESDNEEI 908
            H++Y       K   K+K+K+ A++E+         EEL D   DD     G        
Sbjct: 815  HRYY------KKVAVKEKQKRDADEESIEDVDDEEFEELIDTFEDDNCFSSGK------- 861

Query: 909  DNMLDSTDLSLVGDGDYDYDDLDKVADEDDDDLVG-DASDLEMGAPDDS--AEREDFDTN 965
            D+M  + ++     G  D + LD+ ++  DD+L   D  ++ +G+ DD   AE ++    
Sbjct: 862  DDMDFAGNVKKRTKGAKD-NTLDEDSEGSDDELGNLDDDEVSLGSMDDEEFAEVDEDGGT 920

Query: 966  YFSHSDDDDDNV-QLNIGAE-----------DDGSDEGSKLGRRKRKRKSHKKAGATPFA 1013
            +    DD+ ++V +L + ++           DD    GS  G RK+KR  +    ++ F 
Sbjct: 921  FMDVLDDESESVPELEVHSKVSTKKSKRKGTDDFDFAGSFQGPRKKKRNLN---DSSLFV 977

Query: 1014 SLEDYQHLLDDNDPSEMKSAG 1034
            S E++ HLLD+N  S+  + G
Sbjct: 978  SAEEFGHLLDENMGSKFDNIG 998

Stimulates transcription from the HSP70 promoter.
Homo sapiens (taxid: 9606)

>sp\|P53569\|CEBPZ_MOUSE CCAAT/enhancer-binding protein zeta OS=Mus musculus GN=Cebpz PE=2 SV=2	Back alignment and function description

>sp\|O36021\|YEK9_SCHPO Uncharacterized protein C4F10.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4F10.09c PE=1 SV=1	Back alignment and function description

>sp\|Q19753\|YU0O_CAEEL Uncharacterized protein F23B12.7 OS=Caenorhabditis elegans GN=F23B12.7 PE=3 SV=1	Back alignment and function description

>sp\|Q12176\|MAK21_YEAST Ribosome biogenesis protein MAK21 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAK21 PE=1 SV=1	Back alignment and function description

>sp\|Q8VI84\|NOC3L_MOUSE Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=2	Back alignment and function description

>sp\|Q91Y26\|NOC3L_CRIGR Nucleolar complex protein 3 homolog OS=Cricetulus griseus GN=NOC3L PE=2 SV=1	Back alignment and function description

>sp\|Q8WTT2\|NOC3L_HUMAN Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1	Back alignment and function description

>sp\|Q5XGZ8\|NOC3L_XENLA Nucleolar complex protein 3 homolog OS=Xenopus laevis GN=noc3l PE=2 SV=1	Back alignment and function description

>sp\|Q5R952\|NOC3L_PONAB Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1048
359482456		1030	PREDICTED: CCAAT/enhancer-binding protei	0.945	0.962	0.650	0.0
255582706		1033	conserved hypothetical protein [Ricinus	0.940	0.954	0.662	0.0
224119658		986	predicted protein [Populus trichocarpa]	0.896	0.953	0.658	0.0
449448132		1030	PREDICTED: CCAAT/enhancer-binding protei	0.931	0.947	0.636	0.0
356522432		1018	PREDICTED: CCAAT/enhancer-binding protei	0.927	0.954	0.646	0.0
317106701		1004	JHL06B08.2 [Jatropha curcas]	0.922	0.963	0.649	0.0
147782665		968	hypothetical protein VITISV_015796 [Viti	0.877	0.950	0.602	0.0
357483225		1085	CCAAT/enhancer-binding protein zeta [Med	0.927	0.895	0.586	0.0
160334208		1043	slow walker 2 [Arabidopsis thaliana]	0.873	0.877	0.618	0.0
186494836		1043	protein embryo sac development arrest 25	0.873	0.877	0.617	0.0

>gi\|359482456\|ref\|XP_002271838.2\| PREDICTED: CCAAT/enhancer-binding protein zeta-like [Vitis vinifera] gi\|297742950\|emb\|CBI35817.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1269 bits (3283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/1060 (65%), Positives = 815/1060 (76%), Gaps = 69/1060 (6%)

Query: 1    MSDSKPSKTKNKEDVELLKSDIASFASSLGLSSASAASSGFNDSDFRKTGPIKPQKKFSK 60
            M++SKP K+ N E +EL+++++AS+ASS    S+S  SSGFNDSDFRKTG +K       
Sbjct: 1    MANSKPKKSSNPESMELIRNEVASYASS-IGLSSSLPSSGFNDSDFRKTGTLKA------ 53

Query: 61   NNEKGGAQQEPSNTQKPNIAKFNKTNKKPKPDKKFVKPQKHNDNDKTHFEQELREEMEKS 120
                            P   K  K + KP   + F  PQK          Q+ RE+    
Sbjct: 54   ----------------PKTPKLLKDSSKP---EDF--PQK---------TQKRREQ---- 79

Query: 121  NSKPVPKAPVLTLESGANHDKYKKMPKLPLVKAGNLGVWYVDAKELEDKVLG--GEEKSN 178
            N KP PK     L+     D++K +PKLPLVKA  LGVWYVDA ELE KV G  G++K  
Sbjct: 80   NQKPKPKVFESALDQNKGFDRFKNLPKLPLVKASVLGVWYVDAAELEAKVFGKEGKKKLE 139

Query: 179  SKRVVDLK-YVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADKVSAFSV 237
            +K V + K  V RKRE+ ERL+ QYV DYE  +GQ+GDIKML  T ++GTAADKVSAFSV
Sbjct: 140  AKSVEEWKVVVARKREVAERLMAQYVLDYESPKGQSGDIKMLVTTAKAGTAADKVSAFSV 199

Query: 238  IVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDN 297
            +VG+NP+ANLRSLDALLGMV+SKVGKRHALTGFEALKELFVSSLLPDRKLKTL+Q+PL++
Sbjct: 200  MVGENPIANLRSLDALLGMVASKVGKRHALTGFEALKELFVSSLLPDRKLKTLLQQPLNH 259

Query: 298  LPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ 357
            LP TKDGYSLLL WY+EE LKQRYERFV+ALEE+SRD+LP+LK KA K +YALL  KPEQ
Sbjct: 260  LPATKDGYSLLLLWYWEECLKQRYERFVVALEEASRDMLPILKDKATKTMYALLRGKPEQ 319

Query: 358  EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHLGLRAKY 417
            E RLLSALVNKLGDP  KGAS ADFHLSNLL DHPNMKAVVI+EVD+FLFRPHLGLRAKY
Sbjct: 320  ERRLLSALVNKLGDPGAKGASYADFHLSNLLTDHPNMKAVVIDEVDAFLFRPHLGLRAKY 379

Query: 418  HAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSKTGNKHISTFS 477
            H VNFLSQIRLS++GDGPKVAKRL+DVYFALFKVLI+EAG   K+DK+SK G K  S+F 
Sbjct: 380  HGVNFLSQIRLSNRGDGPKVAKRLLDVYFALFKVLISEAGGDQKIDKSSKAGGKTSSSF- 438

Query: 478  KKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFN 537
            K ++ K + E H+E+DSR+LS LL GVNRAFPYVSS EADDIIEVQTPMLF+LVHS NFN
Sbjct: 439  KNNKAKDAMESHVEMDSRLLSVLLTGVNRAFPYVSSIEADDIIEVQTPMLFQLVHSNNFN 498

Query: 538  VAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLK 597
            + VQALMLLDKISSKN IVSDRFYRALYSKLLLPAAMNSSKA+MFIGLL RAMKNDVNLK
Sbjct: 499  IGVQALMLLDKISSKNQIVSDRFYRALYSKLLLPAAMNSSKAKMFIGLLLRAMKNDVNLK 558

Query: 598  RVAAFSKRLLQVVLQQPPQYACGCLFLLSEVLKARPPLWNMVLQNESVDEDLEHFEDVVE 657
            RVAAF+KR+LQ+ LQQPPQYACGCLFLLSEVL+ARPPLWN VLQNESVD++LEHFED+VE
Sbjct: 559  RVAAFAKRILQMALQQPPQYACGCLFLLSEVLRARPPLWNAVLQNESVDDELEHFEDIVE 618

Query: 658  ETDNEPSDASKTEENDVKLVKRTDDAKSDSESSED-----------EDIPTSDSEEDVSD 706
            ET+NEPS   +TE+    ++++ +  +    SSE+           +D P SD E DVSD
Sbjct: 619  ETENEPSTVKETEDKGNTVLEKRESTRELINSSENMKSDGDSSEDEDDSPASDLESDVSD 678

Query: 707  QPEELFIRDNSKDLQKSKAPS-HHVPQPPTS-SKSSLPGGYNPRHREPSYCNADHVSWWE 764
            + E+L I ++ ++LQ+SK  S H+  Q   S +K  LPGGY+PRHREPSYCNAD VSWWE
Sbjct: 679  EGEDLLIENDLENLQESKTFSDHNGNQSQVSVTKPRLPGGYDPRHREPSYCNADRVSWWE 738

Query: 765  LMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQI 824
            L VLASHVHPSV+TMA T+LSGANIVYNGNPL+DL+L+AFLDK MEKKPK +TWHGGS I
Sbjct: 739  LTVLASHVHPSVATMARTILSGANIVYNGNPLNDLSLSAFLDKLMEKKPKASTWHGGSTI 798

Query: 825  EPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTKKPKKKKKKKGAEDEAA 884
            EPAKKLDMNH LIG EILSLAE+DVPPEDLVFHKFY NKV T+ K  KKKKKKGAEDEAA
Sbjct: 799  EPAKKLDMNHHLIGAEILSLAEMDVPPEDLVFHKFYANKV-TSSKKPKKKKKKGAEDEAA 857

Query: 885  EELFDVDG------DDYEVEGGDESDNEEIDNMLDSTDLSLVGDGDYDYDDLDKVADEDD 938
            EE  D DG      +  EV+GGDESDNEEI+NMLD+ D SL  + DYDYDDLD+VA +DD
Sbjct: 858  EEFLDADGSNGSDDEQVEVDGGDESDNEEIENMLDTADPSLESNSDYDYDDLDQVAGDDD 917

Query: 939  DDLVGDASDLEMGAPDDSAEREDFDTNYFSHSDDDDDNVQLNIGAEDDGSDEGSKLGRRK 998
            DDLVG+ SD EM  P D AE ED +    + ++ ++    ++ G   D SD+G++L  +K
Sbjct: 918  DDLVGNVSDAEMDIPPDMAEGEDDEDLVGNDNNGENSEDDIDFG---DASDDGNQLNSKK 974

Query: 999  RK-RKSHKKAGATPFASLEDYQHLLDDNDPSEMKSAGEKK 1037
            RK RKS  K G +PFASLEDY+HLL++  P++ K    K+
Sbjct: 975  RKQRKSGGKTGKSPFASLEDYEHLLNEETPADKKPKSRKR 1014

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255582706\|ref\|XP_002532131.1\| conserved hypothetical protein [Ricinus communis] gi\|223528190\|gb\|EEF30251.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224119658\|ref\|XP_002331214.1\| predicted protein [Populus trichocarpa] gi\|222873335\|gb\|EEF10466.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449448132\|ref\|XP_004141820.1\| PREDICTED: CCAAT/enhancer-binding protein zeta-like [Cucumis sativus] gi\|449480661\|ref\|XP_004155960.1\| PREDICTED: CCAAT/enhancer-binding protein zeta-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356522432\|ref\|XP_003529850.1\| PREDICTED: CCAAT/enhancer-binding protein zeta-like [Glycine max]	Back alignment and taxonomy information

>gi\|317106701\|dbj\|BAJ53201.1\| JHL06B08.2 [Jatropha curcas]	Back alignment and taxonomy information

>gi\|147782665\|emb\|CAN61791.1\| hypothetical protein VITISV_015796 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357483225\|ref\|XP_003611899.1\| CCAAT/enhancer-binding protein zeta [Medicago truncatula] gi\|355513234\|gb\|AES94857.1\| CCAAT/enhancer-binding protein zeta [Medicago truncatula]	Back alignment and taxonomy information

>gi\|160334208\|gb\|ABX24524.1\| slow walker 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|186494836\|ref\|NP_177388.2\| protein embryo sac development arrest 25 [Arabidopsis thaliana] gi\|332197204\|gb\|AEE35325.1\| protein embryo sac development arrest 25 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1048
TAIR\|locus:2193972		1043	EDA25 "embryo sac development	0.839	0.843	0.567	9.3e-266
ZFIN\|ZDB-GENE-050417-261		1029	zgc:112104 "zgc:112104" [Danio	0.310	0.315	0.333	7.4e-94
UNIPROTKB\|Q03701		1054	CEBPZ "CCAAT/enhancer-binding	0.351	0.349	0.321	2.7e-93
RGD\|1304994		1045	Cebpz "CCAAT/enhancer binding	0.338	0.339	0.341	1.9e-92
MGI\|MGI:109386		1052	Cebpz "CCAAT/enhancer binding	0.281	0.280	0.350	9.1e-89
ASPGD\|ASPL0000056318		1109	AN1200 [Emericella nidulans (t	0.425	0.402	0.358	3.7e-88
POMBASE\|SPAC4F10.09c		860	SPAC4F10.09c "ribosome biogene	0.470	0.573	0.326	2e-83
CGD\|CAL0003265		1066	MAK21 [Candida albicans (taxid	0.451	0.443	0.346	1.4e-76
UNIPROTKB\|Q5ANI8		1066	MAK21 "Potential pre-rRNA nucl	0.451	0.443	0.346	1.4e-76
UNIPROTKB\|G4N7W3		1045	MGG_06346 "Ribosome biogenesis	0.340	0.341	0.361	9.2e-73

TAIR\|locus:2193972 EDA25 "embryo sac development arrest 25" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2478 (877.4 bits), Expect = 9.3e-266, Sum P(2) = 9.3e-266
 Identities = 536/945 (56%), Positives = 651/945 (68%)

Query:     1 MSDSKPSKTKNKEDVELLKSDIXXXXXXXXXXXXXXXXXXXNDSDFRKTGPIKPQKKFSK 60
             MS  KP  +K+ +D+ LL SDI                   ND+DFRK    K QK+   
Sbjct:     1 MSKIKPL-SKSSQDLSLLTSDIASFASSIGLASALPSSGF-NDTDFRKPAKSKTQKRKKP 58

Query:    61 NNEKGGAQQEPSNTQKPNIAXXXXXXXXXXXXXXXXXXXXHNDNDKTHFEQELREEME-K 119
               ++    ++     K NI                      N+  K    ++  ++   K
Sbjct:    59 KKDQQHKDEDEEGEPKSNIG---------------------NEKGKDFGARKQNKDAPVK 97

Query:   120 SNSKPVPKAPVLTLESGAN------HDKYKKMPKLPLVKAGNLGV-WYVDAKELEDKVLG 172
                +P PK   L+++  +        D++K +PKLPLVKA  L   WY DA E E+KV G
Sbjct:    98 QTLQPKPKPGFLSIDDESTGYKKKRFDEFKSLPKLPLVKASLLSSEWYNDAAEFEEKVFG 157

Query:   173 GEEKSNSKRVVDLK-YVERKRELGERLLWQYVSDYEGSRGQTGDIKMLAATQRSGTAADK 231
             G + + + +  D K  VE+KRELGERL+WQY  D+  S+G+ GD+KM+ + Q+SGT ADK
Sbjct:   158 GRKVAVANKE-DFKGVVEKKRELGERLMWQYAEDFATSKGKGGDMKMVISAQKSGTVADK 216

Query:   232 VSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLV 291
             ++AF ++VG+NP+AN+RSLDALLGMV+SKVGKR A  G +AL E+ +  LLPDRKLK+L+
Sbjct:   217 ITAFEIMVGENPIANMRSLDALLGMVTSKVGKRFAFKGLKALSEILIR-LLPDRKLKSLL 275

Query:   292 QRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALL 351
             QRPL+ +PE KDGYSLLLFWY+E+ LKQRYERFV AL+ESS+D+LP LK KALK +Y +L
Sbjct:   276 QRPLNIIPENKDGYSLLLFWYWEDCLKQRYERFVTALDESSKDMLPELKDKALKTIYFML 335

Query:   352 TSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNMKAVVINEVDSFLFRPHL 411
             TSK EQE +LL +LVNKLGDPQNK ASNAD+HL+NLLADHPNMKAVVI+EVDSFLFRPHL
Sbjct:   336 TSKSEQERKLLVSLVNKLGDPQNKSASNADYHLTNLLADHPNMKAVVIDEVDSFLFRPHL 395

Query:   412 GLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEA----GAGDKMDKNSK 467
             GLRAKYHAVNFLSQIRLSHKG+ PKVAKRLIDVYFALFKVL TEA    GA DK   + K
Sbjct:   396 GLRAKYHAVNFLSQIRLSHKGEDPKVAKRLIDVYFALFKVLTTEANRKQGADDKGAADKK 455

Query:   468 TGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPML 527
               N       K ++ ++S +  IELDSRILSALL GVNRAFPYVS++EADDIIE QTP+L
Sbjct:   456 KSNP------KDTKQEVSTDSPIELDSRILSALLTGVNRAFPYVSTDEADDIIESQTPVL 509

Query:   528 FKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLH 587
             FKLVHS NFNV VQ+LMLLDKISSKN IVSDRFYRALYSKLLLP+AMNSSKAEMFIGLL 
Sbjct:   510 FKLVHSANFNVGVQSLMLLDKISSKNKIVSDRFYRALYSKLLLPSAMNSSKAEMFIGLLL 569

Query:   588 RAMKNDVNLKRVAAFSKRXXXXXXXXXXXYACGCLFLLSEVLKARPPLWNMVLQNESVDE 647
             RAMKND+N+KRVAAFSKR           YACGCLFLLSEVLK+RPPLW MV+Q ESV+E
Sbjct:   570 RAMKNDINIKRVAAFSKRVLQVALQQPPQYACGCLFLLSEVLKSRPPLWKMVVQRESVEE 629

Query:   648 --DLEHFEDVVEETDNEPSDASKTEENDVKL----VKRTXXXXXXXXXXXXXXXXXXXXX 701
               D+EHFEDV+E  D +P+  ++ +EN V++    V+++                     
Sbjct:   630 EEDIEHFEDVIEGDDVDPNKKAENDENVVEVDHDGVEKSSRDGDSSSDDEEALAIRLSDE 689

Query:   702 XX--VSDQPEELFIRDNSKDLQKSKAPSHHVP---QPPTSSKSSLPGGYNPRHREPSYCN 756
                  SD  EEL IR+ +  L++    S+ +    QPP    SSLPGGY+PRHREPSYCN
Sbjct:   690 EDDNASDDSEEL-IRNETPQLEEVMEVSNDMEKRSQPPMRP-SSLPGGYDPRHREPSYCN 747

Query:   757 ADHVSWWELMVLASHVHPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLDKFMEKKPKPT 816
             AD  SWWEL VL+ H HPSV+TMAGTLLSG NIVYNGNPL+DL+LTAFLDKFMEKKPK  
Sbjct:   748 ADRASWWELGVLSKHAHPSVATMAGTLLSGTNIVYNGNPLNDLSLTAFLDKFMEKKPKQN 807

Query:   817 TWHGGSQIEPAKKLDMNHQLIGQEILSLAEVDVPPEDLVFHKFYMNKVNTTXXXXXXXXX 876
             TWHGGSQIEP+KKLDM++++IG EILSLAE DV PEDLVFHKFY+NK+ +T         
Sbjct:   808 TWHGGSQIEPSKKLDMSNRVIGAEILSLAEGDVAPEDLVFHKFYVNKMTSTKQSKKKKKK 867

Query:   877 XGAEDEAAEELFXXXX--------XXXXXXXXXXXXNEEIDNMLD 913
                E+EAAEEL+                        NEEI+NMLD
Sbjct:   868 KLPEEEAAEELYDVNDGDGGENYDSDVEFEAGDESDNEEIENMLD 912

GO:0005634 "nucleus" evidence=ISM

GO:0010197 "polar nucleus fusion" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

ZFIN\|ZDB-GENE-050417-261 zgc:112104 "zgc:112104" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q03701 CEBPZ "CCAAT/enhancer-binding protein zeta" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1304994 Cebpz "CCAAT/enhancer binding protein zeta" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:109386 Cebpz "CCAAT/enhancer binding protein zeta" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000056318 AN1200 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

POMBASE\|SPAC4F10.09c SPAC4F10.09c "ribosome biogenesis protein Noc1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

CGD\|CAL0003265 MAK21 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ANI8 MAK21 "Potential pre-rRNA nuclear export protein" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

UNIPROTKB\|G4N7W3 MGG_06346 "Ribosome biogenesis protein MAK21" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1048
COG5593		821	COG5593, COG5593, Nucleic-acid-binding protein pos	6e-66
pfam03914		151	pfam03914, CBF, CBF/Mak21 family	1e-32
COG5593		821	COG5593, COG5593, Nucleic-acid-binding protein pos	3e-19
pfam03914		151	pfam03914, CBF, CBF/Mak21 family	7e-12
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	1e-04
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	4e-04
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	4e-04

>gnl\|CDD\|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

 Score =  238 bits (608), Expect = 6e-66
 Identities = 145/466 (31%), Positives = 235/466 (50%), Gaps = 22/466 (4%)

Query: 213 TGDIKMLAATQRSGTAADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEA 272
           T   K+       GT  D++SA +++V  +P  N ++L+ LL     K  +  A    + 
Sbjct: 85  TSQAKIEKDLLSHGTVKDRISALTLLVQRSPSHNAKNLETLLSFCEKK-SRNVAYQVLKN 143

Query: 273 LKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSLLLFWYYEEFLKQRYERFVLALEESS 332
           LK+LF+S LLP+RKL+    +P  +          L    +E FLK    R +  LE  S
Sbjct: 144 LKDLFISGLLPNRKLRYFKNQPGLSKEVQN---KYLKQRIFESFLKNLRFRVLEVLEVLS 200

Query: 333 RDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNLLADHP 392
            D +  +K + +++VY LL ++PEQE  LL   +NKLGD ++K +S A + +  L   HP
Sbjct: 201 HDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHP 260

Query: 393 NMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVL 452
            MK VV++ ++ F F+P+   R++Y+A+  L+Q  L ++     VA +L+ VYF++F+  
Sbjct: 261 GMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQTELENREKA--VANKLVKVYFSIFRKF 318

Query: 453 ITEAGAGDKMDKNS------KTGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNR 506
           +       +++ N           K+  +        I  E H E +S   SA+L G NR
Sbjct: 319 LENIPKEHRVNSNILEEKLVIGLGKNKGSEKICKTEIIRKEVHTEKNSFYGSAVLTGCNR 378

Query: 507 AFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNHIVSDRFYRALYS 566
           A P+       + ++     LFK+ H   FN + QALML+D+   +  + SDR+Y  LY 
Sbjct: 379 AGPFALLFR--NAVKSHMMTLFKITHEFLFNTSEQALMLIDQEFYRFLLDSDRYYTPLYE 436

Query: 567 KLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVV--LQQPPQYACGCLFL 624
            L+ P    SSK  +++ LL+++++ D N+ RV AF KR LQV+      P +  G    
Sbjct: 437 SLIDPRLSESSKQGIYLNLLYKSLRVDTNVHRVDAFRKRALQVISGWMVLP-FDTGDFMS 495

Query: 625 LSEVLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTE 670
           L ++  A   L N+ L N  VD +   +E   EE +    D  + E
Sbjct: 496 LLQLEMACGDLKNL-LTNTPVDYE---YESDAEE-EQGDKDIKRKE 536

Length = 821

>gnl\|CDD\|217788 pfam03914, CBF, CBF/Mak21 family	Back alignment and domain information

>gnl\|CDD\|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|217788 pfam03914, CBF, CBF/Mak21 family	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1048
KOG2038		988	consensus CAATT-binding transcription factor/60S r	100.0
COG5593		821	Nucleic-acid-binding protein possibly involved in	100.0
PF03914		164	CBF: CBF/Mak21 family; InterPro: IPR005612 This do	100.0
KOG2154		505	consensus Predicted nucleolar protein involved in	99.96
KOG2153		704	consensus Protein involved in the nuclear export o	99.96
COG5117		657	NOC3 Protein involved in the nuclear export of pre	99.94
PF07540		95	NOC3p: Nucleolar complex-associated protein; Inter	98.68
PTZ00429		746	beta-adaptin; Provisional	98.02
KOG2038		988	consensus CAATT-binding transcription factor/60S r	97.49
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.11
KOG1832		1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.84
PTZ00429		746	beta-adaptin; Provisional	96.43
KOG2153		704	consensus Protein involved in the nuclear export o	96.4
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	95.87
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	95.82
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	95.77
KOG1059		877	consensus Vesicle coat complex AP-3, delta subunit	94.71
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	93.86
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.49
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	93.49
KOG3064		303	consensus RNA-binding nuclear protein (MAK16) cont	93.15
PF04931		784	DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070	93.08
KOG1058		948	consensus Vesicle coat complex COPI, beta subunit	92.79
KOG1062		866	consensus Vesicle coat complex AP-1, gamma subunit	92.28
PF05918		556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.6
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.3
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	89.54
PF14632		92	SPT6_acidic: Acidic N-terminal SPT6	87.68
KOG1824		1233	consensus TATA-binding protein-interacting protein	87.62
cd00256		429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	87.5
PF04147		840	Nop14: Nop14-like family ; InterPro: IPR007276 Emg	87.22
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	86.82
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	86.64
PF10363		92	DUF2435: Protein of unknown function (DUF2435)	86.39
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	85.77
PF14500		262	MMS19_N: Dos2-interacting transcription regulator	85.72
PF06524		314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	83.54
COG5231		432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	83.41
KOG1248		1176	consensus Uncharacterized conserved protein [Funct	83.28
KOG0413		1529	consensus Uncharacterized conserved protein relate	82.37
KOG0526		615	consensus Nucleosome-binding factor SPN, POB3 subu	81.8
COG5098		1128	Chromosome condensation complex Condensin, subunit	81.71
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	81.64

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.1e-209  Score=1780.95  Aligned_cols=798  Identities=42%  Similarity=0.623  Sum_probs=631.8

Q ss_pred             CCCCCCCCCCChhhHHHHHhHHHHHhhhhcccccccCCCCCCCcccccCCCCCCCCcCCCCccCCCCCCCCCCCCCcccc
Q 001596            1 MSDSKPSKTKNKEDVELLKSDIASFASSLGLSSASAASSGFNDSDFRKTGPIKPQKKFSKNNEKGGAQQEPSNTQKPNIA   80 (1048)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (1048)
                      |++.+|.. ...-++-+++||+++|||+.||.++ +++.||||.+||+....+.++.+..+.+++ -+++..  .+|.  
T Consensus         1 ea~~~~~s-ee~l~L~~~~sD~~~~as~~e~~~v-~d~kGf~ddlq~~~~k~~~q~~kl~k~dk~-~~~ee~--e~~~--   73 (988)
T KOG2038|consen    1 EAKIKPLS-EESLDLSLLTSDIASFASSIELASV-LDSKGFNDDLQRKPMKLKKQPMKLAKKDKP-KQPEEK--EGKA--   73 (988)
T ss_pred             CCcccccc-HHHHHHhccchhHHHhhhhhhhhhh-cccccccchhhhhhhhhccccccccccCcc-cCchhh--ccch--
Confidence            56777776 5566777899999999999999998 788999999999988777765555444442 111111  1111  


Q ss_pred             ccccCCCCCCCCcccCCCCCCCCCCcchhhhHhHHHhhhcCCCCCCCCCccc-cCCC--CC----ccccCCCCCCccccc
Q 001596           81 KFNKTNKKPKPDKKFVKPQKHNDNDKTHFEQELREEMEKSNSKPVPKAPVLT-LESG--AN----HDKYKKMPKLPLVKA  153 (1048)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~----~~~~~~~~~~~~~~~  153 (1048)
                      +.+    +.+++   +        -..+.+....+.+..+...|++.|...+ ..+.  ++    +.....++.++....
T Consensus        74 qen----~~~e~---~--------k~~k~~~~n~d~~~~qt~n~~~~~n~~s~~~~es~~~~~~~~ee~q~~~~~~~~~i  138 (988)
T KOG2038|consen   74 QEN----KLKED---L--------KIAKKIMANFDSGAVQTNNKKQAANLASKPVDESPGNKKKSNEEKQGKKILGQDGI  138 (988)
T ss_pred             hhh----hhhhh---h--------ccHhHHhhccccchhhhcccccccCCCCCCCcccCCCccchhhhhcCcccccccee
Confidence            000    00000   0        0011122223333333333444333333 1111  11    344445555554433


Q ss_pred             ----CCCccccccchhhhhhhcCCccccCcccc-ccHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCchHHHHHHHHhhch
Q 001596          154 ----GNLGVWYVDAKELEDKVLGGEEKSNSKRV-VDLKYVERKRELGERLLWQYVSDYE-GSRGQTGDIKMLAATQRSGT  227 (1048)
Q Consensus       154 ----~~~~~Wy~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~a~~ll~~~~~~y~-~~~~~~Sd~kwl~ti~~sGT  227 (1048)
                          -.++.||+.....+...         ..+ .....|++++++|+.||+++++.|. ....++|+.+||.+|++|||
T Consensus       139 ~~~~p~g~~wYe~~l~~~~~e---------~~k~~~~~~VeKl~e~G~~lm~qdae~f~~t~~~~gsd~k~l~siiSsGT  209 (988)
T KOG2038|consen  139 LLLHPEGTKWYEIPLDPEHDE---------DTKEMNKDVVEKLLELGKDLMAQDAELFQETKQDKGSDAKWLYSIISSGT  209 (988)
T ss_pred             eeecCCCCcceeeccCcccch---------hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhcCc
Confidence                33556999876444311         111 2337899999999999999999998 45577999999999999999


Q ss_pred             HHHHHHHHHHHHhhChhhhHHHHHHHHHhhhccCChhHHHHHHHHHHHHHhcCCCCCCcccccccCCCCCCCCCcccccc
Q 001596          228 AADKVSAFSVIVGDNPMANLRSLDALLGMVSSKVGKRHALTGFEALKELFVSSLLPDRKLKTLVQRPLDNLPETKDGYSL  307 (1048)
Q Consensus       228 lsDKIaAltllVQesPvhnl~~L~~Ll~m~~~K~srr~al~Al~aLkdLF~~~LLPdRKLr~f~qqPl~~l~~~k~~~~~  307 (1048)
                      ++|||+||+||||+|||||+++|++||+||.+| |||+|++||.+|+|||+++|||+||||+|.|||+..|+....++++
T Consensus       210 ~~DkitA~~LlvqesPvh~lk~lEtLls~c~KK-sk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~  288 (988)
T KOG2038|consen  210 LTDKITAMTLLVQESPVHNLKSLETLLSSCKKK-SKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKI  288 (988)
T ss_pred             chhhhHHHHHhhcccchhHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccce
Confidence            999999999999999999999999999999655 9999999999999999999999999999999999998887778899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhhcCchhHHHHHHHhhhcCCCCCcchhhHHHHHHHHH
Q 001596          308 LLFWYYEEFLKQRYERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHLSNL  387 (1048)
Q Consensus       308 L~lWyFEd~LK~~Y~~Fvq~Le~ls~D~l~~~R~kal~~i~~LL~~kPEQE~~LL~lLVNKLGDp~~KVASkAs~lL~~L  387 (1048)
                      |++|||||+||.+|++||++|+++++||++++|.+||++||.||+++||||++||++||||||||++||||+|+|+|++|
T Consensus       289 Ll~WyfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L  368 (988)
T KOG2038|consen  289 LLMWYFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGL  368 (988)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCchHHHHHHHHHhhcCCCCCcchHHHHHHHhhhhhcccCCCchHHHHHHHHHHHHHHHHHHhhccCCCccccccc
Q 001596          388 LADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALFKVLITEAGAGDKMDKNSK  467 (1048)
Q Consensus       388 L~~HP~MK~VVv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lFk~lv~~~~~~~k~~Kk~K  467 (1048)
                      ++.|||||.||+.||++|+||||++.||+||||||||||+|+|++.  +||++||+|||+||+.|+.......+...++-
T Consensus       369 ~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~--dvAnrLi~iYF~lFk~l~~~~~~d~~k~~k~~  446 (988)
T KOG2038|consen  369 LAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKES--DVANRLISIYFSLFKTLVGKKDKDNRKDDKGA  446 (988)
T ss_pred             HhhCCcceeehHHHHHHHHcccCccccceeehhhhhhhhHhccchH--HHHHHHHHHHHHHHHHHHHhhhhhhhhcccch
Confidence            9999999999999999999999999999999999999999999974  79999999999999999986544332222221


Q ss_pred             cCCCCcCcccccccccCCCCCcccchhhHHHHHHhhHHhhccCCCCchhhhHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 001596          468 TGNKHISTFSKKSQLKISPEPHIELDSRILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLD  547 (1048)
Q Consensus       468 ~~~K~~~~k~kK~~~~~~~e~~~e~~sKLLsALLtGVNRA~Py~~~d~~ddi~e~~ldtLFrI~Hs~nfntsIQAL~LLf  547 (1048)
                      .++|+...+.++  ++.++++..+.+|||||||||||||||||++++  ++++++||+|||+|+|++|||||||||||||
T Consensus       447 ~k~kks~k~~k~--e~~~~e~~~e~nsrllSAlLTGvNRAfPfaq~~--ddk~~~~~~tLFkl~HssNFNTsVQaLmLlf  522 (988)
T KOG2038|consen  447 AKKKKSNKKDKK--EEVSTESPIELNSRLLSALLTGVNRAFPFAQTA--DDKLEEQMKTLFKLTHSSNFNTSVQALMLLF  522 (988)
T ss_pred             hhcccccccchh--hhhcccchhhhhHHHHHHHHhcccccCCcccCc--hHHHHHHhHHHHHHHhhcccchhHHHHHHHH
Confidence            122222222222  345677788999999999999999999999997  7899999999999999999999999999999


Q ss_pred             HHHhcCCCChhHHHHHHHhhhcCccccCCccHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 001596          548 KISSKNHIVSDRFYRALYSKLLLPAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRLLQVVLQQPPQYACGCLFLLSE  627 (1048)
Q Consensus       548 qI~s~~~~~sdRFYraLY~kLLdP~l~~SSk~~mfLnLL~ksLK~D~~~~RVaAFVKRLLQval~~pP~facg~L~LIse  627 (1048)
                      ||+.++.++|||||||||++||||++++||+|+|||||||++||+|.+++||+||||||||||++++|+|||||||||++
T Consensus       523 Qvs~~~~~vSDRyY~aLY~kLLdP~l~~sSKq~m~LnLlykslK~D~ni~RV~AFvKRlLQVa~~q~P~~i~G~l~Llse  602 (988)
T KOG2038|consen  523 QVSKKNDYVSDRYYRALYRKLLDPRLMNSSKQAMFLNLLYKSLKEDINIQRVRAFVKRLLQVAVQQQPPFICGILFLLSE  602 (988)
T ss_pred             HHHHhhhhhHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCchhHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCccccccccCCCcccccccccccccccCCCCCCcccccchhhhhhhcccccCCCCCCCCCCCCCCCCCCcCCCCc
Q 001596          628 VLKARPPLWNMVLQNESVDEDLEHFEDVVEETDNEPSDASKTEENDVKLVKRTDDAKSDSESSEDEDIPTSDSEEDVSDQ  707 (1048)
Q Consensus       628 LLk~~P~L~~ll~~~e~~dd~~E~f~Dv~~~~d~~~~~~~k~e~~~~~~v~~~~~~~sd~~~~~~e~~~~a~~~~~e~d~  707 (1048)
                      |++++|.||.|+.+.+..|++ +.|.++.+++|.+...-...+. .+..|.+    ++-.++.+++            |.
T Consensus       603 l~Karp~l~~lv~~~~~~D~e-~dv~~~~e~DD~deek~vd~Dk-e~~~vdk----~~~e~~~~e~------------ds  664 (988)
T KOG2038|consen  603 LLKARPTLRKLVVNSEDIDPE-EDVVAQMENDDVDEEKKVDLDK-EGKEVDK----NGVEEEVEEE------------DS  664 (988)
T ss_pred             HHHhcchHHHHhhCCcccChh-hhhhhhhcccccchhhhccccc-cceeecc----cccccccccc------------cc
Confidence            999999999999988765543 3455554444433211000000 0111110    0000000000            10


Q ss_pred             hhhhhhhccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcchhHHHHHHhhccCchHHHHHHHhhcCC
Q 001596          708 PEELFIRDNSKDLQKSKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMVLASHVHPSVSTMAGTLLSGA  787 (1048)
Q Consensus       708 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~YDp~kRdP~yanA~~S~LWEL~~L~~HyHPSVa~fA~~LL~G~  787 (1048)
                      .-++.|.        .+|..   .+  .+.+....++|||++|||+||||++||||||.+|+.||||||++||++|++|.
T Consensus       665 ~s~k~E~--------~~~~~---~d--~~~~~~~~~~YD~r~R~P~f~nAd~tslWEl~~ls~HfHPSVa~~Akall~G~  731 (988)
T KOG2038|consen  665 VSEKKED--------LDKKK---VD--PIGARGAKTPYDPRKRNPLFCNADHTSLWELLLLSKHFHPSVATFAKALLEGE  731 (988)
T ss_pred             cccchhh--------hhhhh---cc--ccccccCCCCCCcccCCccccCCccchHHHHHHHhhhcCchHHHHHHHHhcCc
Confidence            0000000        01110   11  12334467899999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCccCcHHHHHHHHHHhCCCCCCCCCCcc-cccccccc---cc--ccccchhHhhhccCCCCchhHHHHHHHH
Q 001596          788 NIVYNGNPLSDLTLTAFLDKFMEKKPKPTTWHGGSQ-IEPAKKLD---MN--HQLIGQEILSLAEVDVPPEDLVFHKFYM  861 (1048)
Q Consensus       788 ~I~y~GdPL~DfTL~~FLDRFvyknPK~~~~~~gs~-iqp~~~~~---~~--~~~~~~~~~~~~~~~V~~de~FFh~yf~  861 (1048)
                      .|+|+|+||+|||||||||||||||||+.++++|.+ |||.++..   ++  .+|+|++|+++++++|||||+||||||+
T Consensus       732 ~i~y~g~~L~dfTL~~FLDrF~yRnPK~~t~~~Gt~imqP~~~~~~v~~s~~~pVns~e~lskk~eeIp~de~fFhry~~  811 (988)
T KOG2038|consen  732 EIQYGGPPLNDFTLMAFLDRFAYRNPKQVTKARGTSIMQPKAKGPWVKRSDQLPVNSEEFLSKKEEEIPPDELFFHRYYS  811 (988)
T ss_pred             eeecCCCchhHHHHHHHHHHHHhcCcccccccCCcccccccccCCCccccccCcccHHHHHHhhhccCChhHHHHHHHhh
Confidence            999999999999999999999999999999888865 69987652   22  3567899999999999999999999999


Q ss_pred             hhhccc
Q 001596          862 NKVNTT  867 (1048)
Q Consensus       862 ~k~~~~  867 (1048)
                      .+....
T Consensus       812 ~~k~~~  817 (988)
T KOG2038|consen  812 SKKTVK  817 (988)
T ss_pred             hhhhhh
Confidence            764433

>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03914 CBF: CBF/Mak21 family; InterPro: IPR005612 This domain is present in the CAATT-binding protein which is essential for growth and necessary for 60S ribosomal subunit biogenesis	Back alignment and domain information

>KOG2154 consensus Predicted nucleolar protein involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]	Back alignment and domain information

>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae []	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]	Back alignment and domain information

>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar	Back alignment and domain information

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms	Back alignment and domain information

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF14632 SPT6_acidic: Acidic N-terminal SPT6	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments	Back alignment and domain information

>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production []	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF10363 DUF2435: Protein of unknown function (DUF2435)	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II	Back alignment and domain information

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues	Back alignment and domain information

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]	Back alignment and domain information

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]	Back alignment and domain information

>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]	Back alignment and domain information

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1048
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1yo8_A		634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 74.9 bits (183), Expect = 1e-13
 Identities = 96/612 (15%), Positives = 184/612 (30%), Gaps = 153/612 (25%)

Query: 271 EALKELFVSSL----LPDRKLKTLVQRPLDNLPETKDGYS--LLLFWYYEEFLKQRYERF 324
              ++ FV +     + D     L +  +D++  +KD  S  L LFW      ++  ++F
Sbjct: 23  SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82

Query: 325 VLALEESSRDVLPVLKTKALKIVYALLTSKPEQEHRLLSALVNKLGDPQNKGASNADFHL 384
           V   EE  R     L +            +P    R+     ++L    N     A +++
Sbjct: 83  V---EEVLRINYKFLMSP-----IKTEQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNV 131

Query: 385 SNLLADHPNMKAVVINEVDSFLFRPHLGLRAKYHAVNFLSQIRLS-----H--KGDGPKV 437
           S L                    +P+L LR        L ++R +         G G   
Sbjct: 132 SRL--------------------QPYLKLRQA------LLELRPAKNVLIDGVLGSG--- 162

Query: 438 AKRLIDVYFALFK-VLITEAGAGDKMDKNSKTGNKHIS--TFSKKSQLKISPEPHIELDS 494
                       K  +  +     K+       +  I        +    SPE  +E+  
Sbjct: 163 ------------KTWVALDVCLSYKVQCKM---DFKIFWLNLKNCN----SPETVLEMLQ 203

Query: 495 RILSALLMGVNRAFPYVSSNEADDIIEVQTPMLFKLVHSKNFNVAVQALMLLDKISSKNH 554
           + L   +     +    SSN    I  +Q   L +L+ SK +      L++L  + +   
Sbjct: 204 K-LLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYE---NCLLVLLNVQNAKA 258

Query: 555 IVSDRFYRALYSKLLL--------PAAMNSSKAEMFIGLLHRAMKNDVNLKRVAAFSKRL 606
              + F   L  K+LL             ++   + +      +  D      +   K L
Sbjct: 259 W--NAF--NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK---SLLLKYL 311

Query: 607 LQVVLQQPPQYACGC----LFLLSEVLKARPPLWNMVLQ--NESVDEDLEHFEDVVEETD 660
                  P +         L +++E ++     W+       + +   +E   +V+E  +
Sbjct: 312 DCRPQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 661 NE---------PSDASKTEENDVKLVKR--TDDAKSDSESSEDEDIPTSDSEEDVSDQPE 709
                      P  A         L+     D  KSD     ++    S  E+    +  
Sbjct: 371 YRKMFDRLSVFPPSAHIPT----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ--PKES 424

Query: 710 ELFIRDNSKDLQK--SKAPSHHVPQPPTSSKSSLPGGYNPRHREPSYCNADHVSWWELMV 767
            + I     +L+       + H          S+   YN      ++ + D +  +    
Sbjct: 425 TISIPSIYLELKVKLENEYALH---------RSIVDHYNIPK---TFDSDDLIPPYLDQY 472

Query: 768 LASHV--HPSVSTMAGTLLSGANIVYNGNPLSDLTLTAFLD-KFMEKKPKPTTWHGGSQI 824
             SH+  H          L              +    FLD +F+E+K +       +  
Sbjct: 473 FYSHIGHH----------LKNIEHPERMTLFRMV----FLDFRFLEQKIRHD---STAWN 515

Query: 825 EPAKKLDMNHQL 836
                L+   QL
Sbjct: 516 ASGSILNTLQQL 527

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1048
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.71
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.22
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.31
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	88.45
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	86.77
d1xm9a1		457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	85.55
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	84.63
d1b3ua_		588	Constant regulatory domain of protein phosphatase	84.63
d1b3ua_		588	Constant regulatory domain of protein phosphatase	83.08
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	81.4

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.63  E-value=0.82  Score=19.95  Aligned_cols=124  Identities=12%  Similarity=0.112  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC--HHH
Q ss_conf             999999999713903899999999999996049146--9999998530579988631507999999998309984--588
Q 001596          322 ERFVLALEESSRDVLPVLKTKALKIVYALLTSKPEQ--EHRLLSALVNKLGDPQNKGASNADFHLSNLLADHPNM--KAV  397 (1048)
Q Consensus       322 ~~Fvq~Le~l~~D~l~~~r~kAl~~i~~LL~~kPEq--E~~LL~lLVNKLGDp~~KVASkAs~lL~~LL~~HP~M--K~V  397 (1048)
                      ..+++.+..++.|..+.+|..+..++..+....+..  ...|+.++.+-+.|++..|-..|...|..+...-+.-  ...
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999985169989999999999989987157877999999999974488524678999888776305888999999


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             9999998650889996427899999442210468993589999999999999
Q 001596          398 VINEVDSFLFRPHLGLRAKYHAVNFLSQIRLSHKGDGPKVAKRLIDVYFALF  449 (1048)
Q Consensus       398 Vv~EVe~lLfRpni~~rAqYYAv~fLnQi~Ls~k~d~~~vA~~LI~iYF~lF  449 (1048)
                      |+.-+..++-  +.+.+.++.++..|.++.-.-..  ......++.++..++
T Consensus       243 i~~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll  290 (588)
T d1b3ua_         243 VMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLM  290 (588)
T ss_dssp             THHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf             9999997202--35688889999857888877665--343444168999987

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure