Citrus Sinensis ID: 001599

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------105
MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccEEEcccEEEEccccccccccEEEEEEcccccccccccEEEEEEEEEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccEEEEEEEEEEEEccccEEEEEEEEcccEEEccccHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEEccccccEEEEEcccccccccccccccccccEEEHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccccccccEEEEEEEcccccEEEccccccccccccccEEEcccccEEcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEEEcccccccccccccEEEEEEEcccccccEEEEEEEEccccHHHHHHHHHHccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccccccccccccccccccccEEEccccccccccEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccEEEc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHHHcHHHHccccccccccccEEccccccccccEEEEEEEcccccccccccEEEEEEEEEEEEccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccEcccccccccccccccccEEEEccccccccccccccEEEEEcccHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccEEEEEcccccEEEEEEEccccccccccEccccccccEEEHHHHHHHHcccEEEcccccccEcccccccccccHHHHHHHcHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHcccEEccccEEEEEEEccccEEEEcccccEEEEcccccEEEccccEEEccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccEEEEEEcccccEEEEEEEEcccccccccHHHHHHHEEEEEEEcccccEEEcccccccccccccccEEEEEcccccccccccccccEEEEEEccccccHHHHHEEEEcccHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEccccccccccccccccccccccEEcccccccccccEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHcHEEHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHcHHHHHEEEEc
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggtseyqgrgrggppqpggrggygggrggvgmgsggrgghsggptrssqipelhqatptpfssgvmtqptqsqagssshspelsEVSQQFQqlslpeevsssqviqpappssksvrfplrpgrgstgtrcIVKANHffaelpdkdlhqydvtitpevtsrgvNRAVMEQLVKLYREShlgkrlpaydgrkslytagplpflskEFRITllddddgqggqreREFKVVIKLAARADLHHLGlflqgrqadapqEALQVLDIVLrelpttrycpvgrsfyspdlgrrqplgegleSWRGFYQsirptqmglslnidmsstafieplpviDFVQQLLnrdvssrplsdadRVKIKKALRGVRVEvthrgnmrrkyrisgltsqttgeltfpvdesgtlkSVVEYFYETYGFVIQhtqwpclqvgnqqrpnylpmevckivegqrySKRLNERQITALLKVTCqrphererDIMQTvhhnayhedpyarEFGIKISEKLASVEArilpapwlkyhdtgkekdclpqvgqwnmmnkkmvnggtvNHWICINFSRHVQDSIARGFCFELAQMCYisgmafnpepvippisarpeHVEKVLKTRYHDAMtklgqgkeLDLLIVIlpdnngslygdLKRICetdlglvsqccLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAIsrriplvsdrptiifgadvthphpgedsspsIAAVVAsqdwpevtkYAGLVCAQAHRQELIQDLFKtwqdpgtpyifpdgvsegQFYQVLLYELDAIRKACAslepnyqppvtFVVVQKRhhtrlfannhhdrnavdrsgnilpgtvvdskichptefdfylcshagiqgtsrpahyhvlwdenkftadgLQSLTNNLCytyarctrsvsivppaYYAHLAAFRARfymepetsdsgsmtsgtigrggmgggvgarstrgpgvgaavrplpalkeNVKRVMFYC
mvrkkrteqpstggessesqetsagggrgsqrpsersappsqggggGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQViqpappssksvrfplrpgrgstGTRCIVKANHFfaelpdkdlhqYDVTItpevtsrgvnrAVMEQLVKLYReshlgkrlpaydgrkSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRelpttrycpvgrsfyspdlgrrqPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRdvssrplsdadrvkikkalrgvrvevthrgnmrrkyrisgltsqttgeltfpvdesGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPapwlkyhdtgkEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAisrriplvsdrpTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLfannhhdrnavdrsgnilPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARStrgpgvgaavrplpalkenvkrVMFYC
MVRKKRteqpstggessesqetsagggRGSQRPSERSAPPSQggggggtgyqgsgrgwgppsqqggrggygggrgrggpqqqhyggTSEYQgrgrggppqpggrggygggrggvgmgsggrgghsggptrssQIPELHQATPTPFSSGVMTQPTQSQAGssshspelsevsQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLddddgqggqREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSgsmtsgtigrggmgggvgarstrgpgVGAAVRPLPALKENVKRVMFYC
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD*******EREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDV*********RVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVT***********IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYM*******************************************************
******************************************************************************************************************************************************************************************************************GTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRIT**************EFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLG**QPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTF**DESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKR****QITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPG***SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFA*************NILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY**************************************VRPLPALKENVKRVMFYC
****************************************************GSGRG***************************GGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGS****************PELHQATPTP*******************************************************RFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP********TSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
******************************************************************************P***HYGGTSE*****RGGP**P*************************************************************************************************VRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPH*GEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANN*********SGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEP**********************************AVRPLPALKENVKRVMFYC
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGPPSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1047 2.2.26 [Sep-21-2011]
O043791048 Protein argonaute 1 OS=Ar yes no 0.901 0.900 0.796 0.0
Q6EU141082 Protein argonaute 1A OS=O yes no 0.983 0.951 0.730 0.0
Q7XSA21118 Protein argonaute 1B OS=O no no 0.872 0.816 0.807 0.0
Q5Z5B21038 Protein argonaute 1D OS=O no no 0.880 0.888 0.733 0.0
Q6K9721011 Protein argonaute 1C OS=O no no 0.811 0.840 0.780 0.0
Q9XGW1988 Protein argonaute 10 OS=A no no 0.799 0.847 0.745 0.0
Q69VD5979 Protein argonaute PNH1 OS no no 0.800 0.855 0.737 0.0
Q851R21058 Protein argonaute MEL1 OS no no 0.803 0.794 0.592 0.0
Q9SJK3997 Protein argonaute 5 OS=Ar no no 0.847 0.889 0.543 0.0
Q7Y0011049 Protein argonaute 12 OS=O no no 0.787 0.786 0.549 0.0
>sp|O04379|AGO1_ARATH Protein argonaute 1 OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1 Back     alignment and function desciption
 Score = 1588 bits (4112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/985 (79%), Positives = 850/985 (86%), Gaps = 41/985 (4%)

Query: 89   EYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGGRGGHSGGPTRSSQIPELHQATPTPFSSG 148
            EYQGRGRGGPP            G  G G G  GG S GP +   +PELHQAT +P    
Sbjct: 79   EYQGRGRGGPPH---------QGGRGGYGGGRGGGPSSGPPQRQSVPELHQAT-SPTYQA 128

Query: 149  VMTQPTQSQAGSSSHSPELSEVSQQFQQLSLPEEVSSSQVIQPAPPSSKSVRFPLRPGRG 208
            V +QPT S+  S +  PE + ++QQF+QLS+ E+ + SQ IQP P SSK+ +FP+RPG+G
Sbjct: 129  VSSQPTLSEV-SPTQVPEPTVLAQQFEQLSV-EQGAPSQAIQPIPSSSKAFKFPMRPGKG 186

Query: 209  STGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLP 268
             +G RCIVKANHFFAELPDKDLH YDVTITPEVTSRGVNRAVM+QLV  YR+SHLG RLP
Sbjct: 187  QSGKRCIVKANHFFAELPDKDLHHYDVTITPEVTSRGVNRAVMKQLVDNYRDSHLGSRLP 246

Query: 269  AYDGRKSLYTAGPLPFLSKEFRITLLDDDDGQGGQR-EREFKVVIKLAARADLHHLGLFL 327
            AYDGRKSLYTAGPLPF SKEFRI LLD++ G GGQR EREFKVVIKL ARADLHHLG+FL
Sbjct: 247  AYDGRKSLYTAGPLPFNSKEFRINLLDEEVGAGGQRREREFKVVIKLVARADLHHLGMFL 306

Query: 328  QGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIR 387
            +G+Q+DAPQEALQVLDIVLRELPT+RY PVGRSFYSPD+G++Q LG+GLESWRGFYQSIR
Sbjct: 307  EGKQSDAPQEALQVLDIVLRELPTSRYIPVGRSFYSPDIGKKQSLGDGLESWRGFYQSIR 366

Query: 388  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 447
            PTQMGLSLNIDMSSTAFIE  PVI FV  LLNRD+SSRPLSDADRVKIKKALRGV+VEVT
Sbjct: 367  PTQMGLSLNIDMSSTAFIEANPVIQFVCDLLNRDISSRPLSDADRVKIKKALRGVKVEVT 426

Query: 448  HRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVIQHTQWPCLQVGNQ 507
            HRGNMRRKYRISGLT+  T ELTFPVDE  T KSVVEYF+ETYGF IQHTQ PCLQVGN 
Sbjct: 427  HRGNMRRKYRISGLTAVATRELTFPVDERNTQKSVVEYFHETYGFRIQHTQLPCLQVGNS 486

Query: 508  QRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVHHNAYHEDPY 567
             RPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRP +RE+DI+QTV  N Y +D Y
Sbjct: 487  NRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIDREKDILQTVQLNDYAKDNY 546

Query: 568  AREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWI 627
            A+EFGIKIS  LASVEARILP PWLKYH++G+E  CLPQVGQWNMMNKKM+NGGTVN+WI
Sbjct: 547  AQEFGIKISTSLASVEARILPPPWLKYHESGREGTCLPQVGQWNMMNKKMINGGTVNNWI 606

Query: 628  CINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMT 687
            CINFSR VQD++AR FC ELAQMCY+SGMAFNPEPV+PP+SARPE VEKVLKTRYHDA +
Sbjct: 607  CINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVSARPEQVEKVLKTRYHDATS 666

Query: 688  KLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYMANVALK 747
            KL QGKE+DLLIVILPDNNGSLYGDLKRICET+LG+VSQCCLTKHVFKMSKQYMANVALK
Sbjct: 667  KLSQGKEIDLLIVILPDNNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALK 726

Query: 748  INVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEV 807
            INVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE+
Sbjct: 727  INVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEI 786

Query: 808  TKYAGLVCAQAHRQELIQDLFKTWQDPGTPYI-------------------------FPD 842
            TKYAGLVCAQAHRQELIQDLFK W+DP    +                         + D
Sbjct: 787  TKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRD 846

Query: 843  GVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRS 902
            GVSEGQFYQVLLYELDAIRKACASLE  YQPPVTFVVVQKRHHTRLFA NH+DR++VDRS
Sbjct: 847  GVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRS 906

Query: 903  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 962
            GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDEN FTADGLQSLTNNLC
Sbjct: 907  GNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTNNLC 966

Query: 963  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGGMGGGVGARSTR 1022
            YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSM SG++ R   GGG+  RSTR
Sbjct: 967  YTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMASGSMAR---GGGMAGRSTR 1023

Query: 1023 GPGVGAAVRPLPALKENVKRVMFYC 1047
            GP V AAVRPLPALKENVKRVMFYC
Sbjct: 1024 GPNVNAAVRPLPALKENVKRVMFYC 1048
Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Requires DRB1 for directional loading of the small RNA duplex (guide stand and passenger strand) onto RISC for passenger strand degradation. Unlike animal RISC that associates in high molecular weight complex, Arabidopsis RISC is probably composed only of the AGO1 protein and associated RNA without any other proteins. Associates mainly with miRNAs of 21 nucleotide in length and preferentially recruits small RNAs with a 5' terminal uridine. Associates with 22 nucleotide miRNAs to trigger RDR6-dependent secondary siRNAs biogenesis. This pathway amplifies silencing by using the target RNA as substrate to generate secondary siRNAs. Binds to miR168 which targets its own mRNA for repression, establishing a homeostatic regulatory loop. Involved in antiviral RNA silencing by contributing to viral RNA clearance. Is capable of targeting viral RNAs with more compact structures than AGO7 which favors less structured RNA targets. May not associate with 24 nucleotide siRNAs involved in chromatin silencing. Essential for multiple processes in development. Essential for proper development of leaves and floral organs, and formation of axillary meristems. Like AGO10, required for stem cell function and organ polarity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6EU14|AGO1A_ORYSJ Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1 Back     alignment and function description
>sp|Q7XSA2|AGO1B_ORYSJ Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3 Back     alignment and function description
>sp|Q5Z5B2|AGO1D_ORYSJ Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1 Back     alignment and function description
>sp|Q6K972|AGO1C_ORYSJ Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1 Back     alignment and function description
>sp|Q9XGW1|AGO10_ARATH Protein argonaute 10 OS=Arabidopsis thaliana GN=AGO10 PE=2 SV=1 Back     alignment and function description
>sp|Q69VD5|PNH1_ORYSJ Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1 Back     alignment and function description
>sp|Q851R2|MEL1_ORYSJ Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SJK3|AGO5_ARATH Protein argonaute 5 OS=Arabidopsis thaliana GN=AGO5 PE=1 SV=2 Back     alignment and function description
>sp|Q7Y001|AGO12_ORYSJ Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1047
2555706391063 eukaryotic translation initiation factor 0.986 0.971 0.841 0.0
2254642791085 PREDICTED: protein argonaute 1-like [Vit 0.996 0.961 0.803 0.0
2960880131038 unnamed protein product [Vitis vinifera] 0.954 0.962 0.790 0.0
3565600551053 PREDICTED: protein argonaute 1-like [Gly 0.976 0.970 0.807 0.0
2241204741062 argonaute protein group [Populus trichoc 0.871 0.858 0.866 0.0
3565310361058 PREDICTED: protein argonaute 1-like [Gly 0.980 0.970 0.820 0.0
4091279481054 AGO1A [Solanum lycopersicum] gi|40989306 0.971 0.964 0.790 0.0
4494392251064 PREDICTED: protein argonaute 1A-like [Cu 0.982 0.967 0.821 0.0
846889061052 AGO1-1, partial [Nicotiana benthamiana] 0.973 0.968 0.786 0.0
2986763331061 ARGONAUTE 1 [Nicotiana tabacum] 0.979 0.967 0.782 0.0
>gi|255570639|ref|XP_002526275.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] gi|223534406|gb|EEF36112.1| eukaryotic translation initiation factor 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1729 bits (4477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 906/1077 (84%), Positives = 949/1077 (88%), Gaps = 44/1077 (4%)

Query: 1    MVRKKRTEQPSTGGESSESQETSAGGGRGSQRPSERSAPPSQGGGGGGTGYQGSGRGWGP 60
            MVRK+RTE P++GGESSE  E ++GG   SQRP ER+A        G  G    GR WGP
Sbjct: 1    MVRKRRTEAPASGGESSEPHEAASGG---SQRPYERNA----PPQQGPGGPYQGGRSWGP 53

Query: 61   PSQQGGRGGYGGGRGRGGPQQQHYGGTSEYQGRGRGGPPQPGGRGGYGGGRGGVGMGSGG 120
             SQQGGRGG G GR  G  QQQ YGG  EYQGRGRG           G G  G G  S  
Sbjct: 54   QSQQGGRGGGGRGRSGGMSQQQQYGGGPEYQGRGRGP------PQQGGRGGYGGGRSSSN 107

Query: 121  RGGH-SGGPTRSSQIPELHQATPTPFSSGVMTQPTQSQAGSSSHSPELSEV--SQQFQQL 177
            RGG  S GP+R   +PELHQAT  P+ +GV  Q   S+  SSS  PE S V  +QQ Q+L
Sbjct: 108  RGGPPSVGPSRPP-VPELHQATLAPYQAGVSPQLMPSEGSSSSGPPEPSPVVVAQQMQEL 166

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTI 237
            S+ +EVSSSQ IQ  PPSSKS+RFPLRPG+GSTG RCIVKANHFFAELPDKDLHQYDVTI
Sbjct: 167  SIQQEVSSSQPIQAPPPSSKSMRFPLRPGKGSTGIRCIVKANHFFAELPDKDLHQYDVTI 226

Query: 238  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDDD 297
            TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPF+SKEF+ITL+D+D
Sbjct: 227  TPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFKITLIDED 286

Query: 298  DGQGGQR-EREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 356
            DG GGQR EREF+VVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP
Sbjct: 287  DGSGGQRREREFRVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCP 346

Query: 357  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQ 416
            VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFV Q
Sbjct: 347  VGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVNQ 406

Query: 417  LLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES 476
            LLNRDVSSRPLSDADRVKIKKALRGV+VEVTHRGNMRRKYRISGLTSQ T ELTFPVDE 
Sbjct: 407  LLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDER 466

Query: 477  GTLKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQIT 536
            GT+KSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCK+VEGQRYSKRLNERQIT
Sbjct: 467  GTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKVVEGQRYSKRLNERQIT 526

Query: 537  ALLKVTCQRPHERERDIMQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHD 596
            ALLKVTCQRP ERERDIMQTVHHNAY  DPYA+EFGIKISEKLASVEARILPAPWLKYHD
Sbjct: 527  ALLKVTCQRPQERERDIMQTVHHNAYGNDPYAKEFGIKISEKLASVEARILPAPWLKYHD 586

Query: 597  TGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGM 656
            TG+EKDCLPQVGQWNMMNKKMVNGGTVN+WICINFSR+VQDS+ARGFC+ELAQMCYISGM
Sbjct: 587  TGREKDCLPQVGQWNMMNKKMVNGGTVNNWICINFSRNVQDSVARGFCYELAQMCYISGM 646

Query: 657  AFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRI 716
            AFNPEPV+PP+SARPE VEKVLKTRYHDAMTKL QGKELDLLIVILPDNNGSLYG+LKRI
Sbjct: 647  AFNPEPVLPPVSARPEQVEKVLKTRYHDAMTKLQQGKELDLLIVILPDNNGSLYGELKRI 706

Query: 717  CETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTI 776
            CETDLGLVSQCCLTKHVF+M+KQY+ANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTI
Sbjct: 707  CETDLGLVSQCCLTKHVFRMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTI 766

Query: 777  IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPGT 836
            IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK WQDP  
Sbjct: 767  IFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKEWQDPVR 826

Query: 837  PYI-------------------------FPDGVSEGQFYQVLLYELDAIRKACASLEPNY 871
              +                         + DGVSEGQFYQVLLYELDAIRKACASLEPNY
Sbjct: 827  GRVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNY 886

Query: 872  QPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI 931
            QPPVTFVVVQKRHHTRLFANNH+DRNAVD+SGNILPGTVVDSKICHPTEFDFYLCSHAGI
Sbjct: 887  QPPVTFVVVQKRHHTRLFANNHNDRNAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGI 946

Query: 932  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 991
            QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY
Sbjct: 947  QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFY 1006

Query: 992  MEPETSDSGSMTSGTI-GRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047
            MEPETSDSGSMTSG + GRGGMGGG GARSTRGP   AAVRPLPALKENVKRVMFYC
Sbjct: 1007 MEPETSDSGSMTSGPVGGRGGMGGGAGARSTRGPAASAAVRPLPALKENVKRVMFYC 1063

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225464279|ref|XP_002271225.1| PREDICTED: protein argonaute 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088013|emb|CBI35296.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356560055|ref|XP_003548311.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120474|ref|XP_002318338.1| argonaute protein group [Populus trichocarpa] gi|222859011|gb|EEE96558.1| argonaute protein group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356531036|ref|XP_003534084.1| PREDICTED: protein argonaute 1-like [Glycine max] Back     alignment and taxonomy information
>gi|409127948|gb|AFV15377.1| AGO1A [Solanum lycopersicum] gi|409893066|gb|AFV46190.1| argonaute1-1, partial [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|449439225|ref|XP_004137387.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] gi|449523970|ref|XP_004168996.1| PREDICTED: protein argonaute 1A-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|84688906|gb|ABC61502.1| AGO1-1, partial [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|298676333|dbj|BAJ09698.1| ARGONAUTE 1 [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1047
TAIR|locus:2170897988 AGO10 "ARGONAUTE 10" [Arabidop 0.608 0.644 0.751 0.0
UNIPROTKB|Q69VD5979 PHN1 "Protein argonaute PNH1" 0.616 0.658 0.753 0.0
UNIPROTKB|Q851R21058 MEL1 "Protein argonaute MEL1" 0.610 0.603 0.575 7.9e-280
TAIR|locus:2057851997 AGO5 "ARGONAUTE 5" [Arabidopsi 0.644 0.677 0.525 4.1e-263
UNIPROTKB|F1P3Z0860 EIF2C3 "Protein argonaute-3" [ 0.757 0.922 0.438 2.4e-170
UNIPROTKB|F1MG44860 EIF2C3 "Protein argonaute-3" [ 0.742 0.903 0.443 4e-170
UNIPROTKB|Q9H9G7860 EIF2C3 "Protein argonaute-3" [ 0.742 0.903 0.443 4e-170
UNIPROTKB|F1LUS2854 Eif2c3 "Protein Eif2c3" [Rattu 0.742 0.909 0.442 5e-170
UNIPROTKB|E2R0U1860 EIF2C3 "Uncharacterized protei 0.742 0.903 0.442 1.3e-169
UNIPROTKB|Q5ZLG4860 EIF2C3 "Protein argonaute-3" [ 0.757 0.922 0.436 3.6e-169
TAIR|locus:2170897 AGO10 "ARGONAUTE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2564 (907.6 bits), Expect = 0., Sum P(3) = 0.
 Identities = 481/640 (75%), Positives = 552/640 (86%)

Query:   197 KSVRFPLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVK 256
             K+  F  RPG G+ GT+CIVKANHF A+LP KDL+QYDVTITPEV+S+ VNRA++ +LV+
Sbjct:   124 KNSNFAPRPGFGTLGTKCIVKANHFLADLPTKDLNQYDVTITPEVSSKSVNRAIIAELVR 183

Query:   257 LYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLXXXXXXXXX--REREFKVVIKL 314
             LY+ES LG+RLPAYDGRKSLYTAG LPF  KEF + ++           RER +KV IK 
Sbjct:   184 LYKESDLGRRLPAYDGRKSLYTAGELPFTWKEFSVKIVDEDDGIINGPKRERSYKVAIKF 243

Query:   315 AARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGE 374
              ARA++HHLG FL G++AD PQEA+Q+LDIVLREL   R+CPVGRSF+SPD+   Q LGE
Sbjct:   244 VARANMHHLGEFLAGKRADCPQEAVQILDIVLRELSVKRFCPVGRSFFSPDIKTPQRLGE 303

Query:   375 GLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVK 434
             GLESW GFYQSIRPTQMGLSLNIDM+S AFIEPLPVI+FV QLL +DV S+PLSD+DRVK
Sbjct:   304 GLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVIEFVAQLLGKDVLSKPLSDSDRVK 363

Query:   435 IKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDESGTLKSVVEYFYETYGFVI 494
             IKK LRGV+VEVTHR N+RRKYR++GLT+Q T EL FPVDE+ T+KSV+EYF E YGF I
Sbjct:   364 IKKGLRGVKVEVTHRANVRRKYRVAGLTTQPTRELMFPVDENCTMKSVIEYFQEMYGFTI 423

Query:   495 QHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIM 554
             QHT  PCLQVGNQ++ +YLPME CKIVEGQRY+KRLNE+QITALLKVTCQRP +RE DI+
Sbjct:   424 QHTHLPCLQVGNQKKASYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDIL 483

Query:   555 QTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMN 614
             +TV HNAY +DPYA+EFG+ ISEKLASVEARILPAPWLKYH+ GKEKDCLPQVGQWNMMN
Sbjct:   484 RTVQHNAYDQDPYAKEFGMNISEKLASVEARILPAPWLKYHENGKEKDCLPQVGQWNMMN 543

Query:   615 KKMVNGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHV 674
             KKM+NG TV+ W C+NFSR VQ+++ARGFC EL QMC +SGM FNPEPVIP  SARP+ V
Sbjct:   544 KKMINGMTVSRWACVNFSRSVQENVARGFCNELGQMCEVSGMEFNPEPVIPIYSARPDQV 603

Query:   675 EKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVF 734
             EK LK  YH +M K  +GKEL+LL+ ILPDNNGSLYGDLKRICET+LGL+SQCCLTKHVF
Sbjct:   604 EKALKHVYHTSMNKT-KGKELELLLAILPDNNGSLYGDLKRICETELGLISQCCLTKHVF 662

Query:   735 KMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPS 794
             K+SKQY+ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP  GE+SSPS
Sbjct:   663 KISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPS 722

Query:   795 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDP 834
             IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTWQDP
Sbjct:   723 IAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDP 762
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0035019 "somatic stem cell maintenance" evidence=IMP
GO:0010586 "miRNA metabolic process" evidence=IMP
GO:0035198 "miRNA binding" evidence=IDA
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009855 "determination of bilateral symmetry" evidence=RCA
GO:0009887 "organ morphogenesis" evidence=RCA
GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA
GO:0010014 "meristem initiation" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010051 "xylem and phloem pattern formation" evidence=RCA
GO:0010073 "meristem maintenance" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0048439 "flower morphogenesis" evidence=RCA
GO:0048519 "negative regulation of biological process" evidence=RCA
UNIPROTKB|Q69VD5 PHN1 "Protein argonaute PNH1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q851R2 MEL1 "Protein argonaute MEL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2057851 AGO5 "ARGONAUTE 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P3Z0 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG44 EIF2C3 "Protein argonaute-3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9G7 EIF2C3 "Protein argonaute-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LUS2 Eif2c3 "Protein Eif2c3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0U1 EIF2C3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLG4 EIF2C3 "Protein argonaute-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EU14AGO1A_ORYSJNo assigned EC number0.73030.98370.9519yesno
Q6K972AGO1C_ORYSJNo assigned EC number0.78000.81180.8407nono
Q7XSA2AGO1B_ORYSJNo assigned EC number0.80750.87200.8166nono
O04379AGO1_ARATHNo assigned EC number0.79690.90160.9007yesno
Q69VD5PNH1_ORYSJNo assigned EC number0.73770.80030.8559nono
Q5Z5B2AGO1D_ORYSJNo assigned EC number0.73380.88060.8882nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1047
PLN03202900 PLN03202, PLN03202, protein argonaute; Provisional 0.0
cd04657426 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain 0.0
pfam02171296 pfam02171, Piwi, Piwi domain 1e-114
smart00950301 smart00950, Piwi, This domain is found in the prot 1e-105
cd04658448 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P 1e-66
cd02826393 cd02826, Piwi-like, Piwi-like: PIWI domain 1e-65
cd02846114 cd02846, PAZ_argonaute_like, PAZ domain, argonaute 6e-43
pfam02170114 pfam02170, PAZ, PAZ domain 7e-37
pfam12764102 pfam12764, Gly-rich_Ago1, Glycine-rich region of a 9e-27
pfam0869952 pfam08699, DUF1785, Domain of unknown function (DU 5e-23
cd02825115 cd02825, PAZ, PAZ domain, named PAZ after the prot 1e-12
smart00949138 smart00949, PAZ, This domain is named PAZ after th 2e-11
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 8e-08
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 2e-07
pfam12810248 pfam12810, Gly_rich, Glycine rich protein 3e-07
pfam03276582 pfam03276, Gag_spuma, Spumavirus gag protein 3e-06
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 6e-06
PTZ00146293 PTZ00146, PTZ00146, fibrillarin; Provisional 1e-05
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-05
pfam02084239 pfam02084, Bindin, Bindin 2e-05
pfam05268261 pfam05268, GP38, Phage tail fibre adhesin Gp38 2e-05
pfam0717291 pfam07172, GRP, Glycine rich protein family 6e-05
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 1e-04
pfam06682317 pfam06682, DUF1183, Protein of unknown function (D 2e-04
smart00157218 smart00157, PRP, Major prion protein 3e-04
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
pfam07466280 pfam07466, DUF1517, Protein of unknown function (D 0.002
PRK12678672 PRK12678, PRK12678, transcription termination fact 0.002
pfam04959211 pfam04959, ARS2, Arsenite-resistance protein 2 0.003
pfam06273496 pfam06273, eIF-4B, Plant specific eukaryotic initi 0.003
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.004
PRK06958182 PRK06958, PRK06958, single-stranded DNA-binding pr 0.004
>gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional Back     alignment and domain information 
 Score =  625 bits (1613), Expect = 0.0
 Identities = 343/943 (36%), Positives = 492/943 (52%), Gaps = 125/943 (13%)

Query: 178  SLPEEVSSSQVIQPAPPSSKSVRFPL-RPGRGSTGTRCIVKANHFFAEL--PDKDLHQYD 234
             +P  V   ++ +P    SK  R P+ R G GS G +  +  NHF   +  PD     Y 
Sbjct: 10   VVPPNVVPIKL-EPTKKPSKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYS 68

Query: 235  VTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFR 290
            V++T E    V  +G+ R V++++ + Y     GK   AYDG KSL+T G LP    EF 
Sbjct: 69   VSLTYEDGRPVDGKGIGRKVIDKVQETYSSDLAGKDF-AYDGEKSLFTVGALPQNKLEFT 127

Query: 291  ITLLD--------------DDDGQGGQRER--------EFKVVIKLAARADLHHLGLFLQ 328
            + L D              +    GG R+R         FKV I  AA+  +  +   L+
Sbjct: 128  VVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANALR 187

Query: 329  GRQADAPQEALQVLDIVLRELPTTRYCPVGR-SFYSPDLGRRQPLGEGLESWRGFYQSIR 387
            G++++  Q+AL+VLDI+LR+    + C + R SF+  D      LG G+   RGF+ S R
Sbjct: 188  GQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247

Query: 388  PTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVT 447
             TQ GLSLNID+S+T  ++P PV+DF+  + N++V   P    D  K K+ L+ +RV+V+
Sbjct: 248  TTQGGLSLNIDVSTTMIVQPGPVVDFL--IANQNVRD-PFQ-IDWSKAKRMLKNLRVKVS 303

Query: 448  HRGNMRRKYRISGLTSQTTGELTFPV-------DESGTLK-SVVEYFYETYGFVIQHT-Q 498
               N   +Y+I+GL+ +   E TF +       +E  T++ +V +YF +  G  ++++  
Sbjct: 304  PS-NQ--EYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGD 360

Query: 499  WPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQTVH 558
             PC+ VG  +RP Y P+E+C +V  QRY+K L+  Q ++L++ + Q+P ER + +   + 
Sbjct: 361  LPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDALK 420

Query: 559  HNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMV 618
             + Y  DP  R  GI IS +   VE R+LPAP LK    G  +D  P+ G+WN  NKK+V
Sbjct: 421  SSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLK---VGNGEDFFPRNGRWNFNNKKLV 477

Query: 619  NGGTVNHWICINFSRHVQDSIARGFCFELAQMCYISGMAF-NPEPVIP--PISAR---PE 672
                +  W  +NFS        R    +L +   + G+    P  V    P   R   P 
Sbjct: 478  EPTKIERWAVVNFSARCD---IRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPV 534

Query: 673  HVEKVLKTRYHDAMTKLGQGKELDLLIVILPD-NNGSLYGDLKRICETDLGLVSQCCLTK 731
             VEK+ +       +KL    +   L+ ILP+  N  +YG  K+   ++ G+V+QC    
Sbjct: 535  RVEKMFEQ----IQSKLPGPPQF--LLCILPERKNSDIYGPWKKKNLSEFGIVTQCIAP- 587

Query: 732  HVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDS 791
               +++ QY+ NV LKIN K+GG N++L    S  IPLVS  PTII G DV+H  PG+  
Sbjct: 588  --TRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSD 645

Query: 792  SPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQD------------------ 833
             PSIAAVV+S+ WP +++Y   V  Q+ + E+I  LFK   D                  
Sbjct: 646  VPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSS 705

Query: 834  ----PGTPYIFPDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLF 889
                P    IF DGVSE QF QVL  ELD I +AC  L+ ++ P  T +V QK HHT+ F
Sbjct: 706  GKRKPEQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFF 765

Query: 890  ANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKF 949
                 D        N+ PGTVVD+KICHP   DFY+C+HAG+ GT+RP HYHVL DE  F
Sbjct: 766  QAGSPD--------NVPPGTVVDNKICHPRNNDFYMCAHAGMIGTTRPTHYHVLLDEIGF 817

Query: 950  TADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME----PETSDS-GSMTS 1004
            +AD LQ L ++L Y Y R T ++S+V P  YAHLAA +   +M+     ETS S G +TS
Sbjct: 818  SADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGITS 877

Query: 1005 GTIGRGGMGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047
                        GA           V  LP L ENV   MF+C
Sbjct: 878  -----------AGA---------VPVPELPRLHENVASSMFFC 900

Length = 900
>gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>gnl|CDD|216915 pfam02171, Piwi, Piwi domain Back     alignment and domain information
>gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives Back     alignment and domain information
>gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain Back     alignment and domain information
>gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily Back     alignment and domain information
>gnl|CDD|216914 pfam02170, PAZ, PAZ domain Back     alignment and domain information
>gnl|CDD|221759 pfam12764, Gly-rich_Ago1, Glycine-rich region of argonaut Back     alignment and domain information
>gnl|CDD|219976 pfam08699, DUF1785, Domain of unknown function (DUF1785) Back     alignment and domain information
>gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|221784 pfam12810, Gly_rich, Glycine rich protein Back     alignment and domain information
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|216868 pfam02084, Bindin, Bindin Back     alignment and domain information
>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38 Back     alignment and domain information
>gnl|CDD|219320 pfam07172, GRP, Glycine rich protein family Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183) Back     alignment and domain information
>gnl|CDD|197548 smart00157, PRP, Major prion protein Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517) Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|218350 pfam04959, ARS2, Arsenite-resistance protein 2 Back     alignment and domain information
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1047
PLN03202900 protein argonaute; Provisional 100.0
KOG1041876 consensus Translation initiation factor 2C (eIF-2C 100.0
KOG1042845 consensus Germ-line stem cell division protein Hiw 100.0
cd04657426 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut 100.0
cd04658448 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain 100.0
cd02826393 Piwi-like Piwi-like: PIWI domain. Domain found in 100.0
PF02171302 Piwi: Piwi domain; InterPro: IPR003165 This domain 100.0
cd04659404 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI 100.0
PF02170135 PAZ: PAZ domain; InterPro: IPR003100 This domain i 99.88
cd02846114 PAZ_argonaute_like PAZ domain, argonaute_like subf 99.84
cd02825115 PAZ PAZ domain, named PAZ after the proteins Piwi 99.82
cd02845117 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In 99.71
PF0869952 DUF1785: Domain of unknown function (DUF1785); Int 99.49
cd02844135 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( 99.4
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 99.26
COG1431685 Argonaute homolog, implicated in RNA metabolism [T 99.24
cd02843122 PAZ_dicer_like PAZ domain, dicer_like subfamily. D 98.42
KOG1596317 consensus Fibrillarin and related nucleolar RNA-bi 94.08
PF12764104 Gly-rich_Ago1: Glycine-rich region of argonaut; In 89.82
COG4371334 Predicted membrane protein [Function unknown] 86.97
PF13032138 DUF3893: Domain of unknown function (DUF3893) 86.55
smart00157217 PRP Major prion protein. The prion protein is a ma 84.11
PRK11617224 endonuclease V; Provisional 83.13
KOG4307944 consensus RNA binding protein RBM12/SWAN [General 80.54
>PLN03202 protein argonaute; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.7e-170  Score=1579.15  Aligned_cols=811  Identities=38%  Similarity=0.648  Sum_probs=689.6

Q ss_pred             CCCCccCCCCCCCCCCCCcceEEeeeEEeecC--CCceeeeEEEEcCC----cccchhhHHHHHHHHHHHHhhccCCccc
Q 001599          195 SSKSVRFPLRPGRGSTGTRCIVKANHFFAELP--DKDLHQYDVTITPE----VTSRGVNRAVMEQLVKLYRESHLGKRLP  268 (1047)
Q Consensus       195 s~~~~~~p~RP~~Gt~G~~v~l~aN~f~v~~~--~~~iy~YdV~i~pe----~~~k~~~r~i~~~l~~~~~~~~~~~~~~  268 (1047)
                      ..+...+|+||||||.|++|.|+||||+|+++  +..||||||+|+|+    +.+++++++|++++++++... +.+..+
T Consensus        27 ~~~~~~~~~RPg~Gt~G~~i~l~aN~f~v~~~~~~~~ly~Y~V~i~p~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~  105 (900)
T PLN03202         27 SKPKRLPMARRGFGSKGQKIQLLTNHFKVSVNNPDGHFFHYSVSLTYEDGRPVDGKGIGRKVIDKVQETYSSD-LAGKDF  105 (900)
T ss_pred             cccccccCCCCCCCCCCCEEEEEeeEEEEeccCCCCcEEEEEEEeccCCCCcccchhhhHHHHHHHHHhhHHh-hCCCce
Confidence            34444678899999999999999999999975  56799999999964    445667889999998766443 444467


Q ss_pred             eeeccceEEecCCCCCCCceEEEEEecCCCC------------CC----------CCCCcEEEEEEEEeeeeChhhHHHH
Q 001599          269 AYDGRKSLYTAGPLPFLSKEFRITLLDDDDG------------QG----------GQREREFKVVIKLAARADLHHLGLF  326 (1047)
Q Consensus       269 ~yDG~~~lys~~~Lp~~~~~~~v~~~~~~~~------------~~----------~~~~~~~~V~i~~~~~i~l~~l~~~  326 (1047)
                      ||||+++|||..+||++..+|.|++.++++.            .+          ..+.+.|+|+|++++++++.+|.+|
T Consensus       106 ~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~~~  185 (900)
T PLN03202        106 AYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIANA  185 (900)
T ss_pred             eecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHHHH
Confidence            9999999999999998767788887542111            00          1246889999999999999999999


Q ss_pred             hccCCCCChHHHHHHHHHHHhcCCCCC-cccccccccCCCCCCcccCCCCeEEeecceeeeeccCCeeeeeeecccceee
Q 001599          327 LQGRQADAPQEALQVLDIVLRELPTTR-YCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFI  405 (1047)
Q Consensus       327 l~~~~~~~~~~~lq~Lniilr~~~~~~-~~~~Gr~ff~~~~~~~~~l~~Gle~~~G~~~Svr~~~~~l~LniD~s~~~F~  405 (1047)
                      |.+.....+.++|||||||||+.++.. ++.+||+||+++.....+|+.|+|+|+||++|||+++++|+||||+++++||
T Consensus       186 l~~~~~~~~~~~iq~lnivlr~~~~~~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr~~~~~l~LnvDvs~~~F~  265 (900)
T PLN03202        186 LRGQESENSQDALRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIV  265 (900)
T ss_pred             HcCCCCCCcHHHHHHHHHHHhhhhhhCCCceeccccCCCCCcccccCCCceEEeeeeeeEeeeccCceEEeeeeeeeeee
Confidence            999988888999999999999988765 8899999998654445679999999999999999999999999999999999


Q ss_pred             cCccHHHHHHHHhcCCCCCCCCChHHHHHHHHHccceEEEEeecCCcCceEEEeccCCCCCcceeeeecCC--------C
Q 001599          406 EPLPVIDFVQQLLNRDVSSRPLSDADRVKIKKALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVDES--------G  477 (1047)
Q Consensus       406 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~l~~~L~gl~V~~~~~~~~~r~~~I~~i~~~~a~~~~F~~~~~--------g  477 (1047)
                      ++++|+|+|.++.+...    ....++.++.++|+|++|.++|+   +++|+|.+|++.++++.+|++++.        +
T Consensus       266 ~~~~l~~~l~~~~~~~~----~~~~~~~~~~~~lkGl~V~t~~~---~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~  338 (900)
T PLN03202        266 QPGPVVDFLIANQNVRD----PFQIDWSKAKRMLKNLRVKVSPS---NQEYKITGLSEKPCKEQTFSLKQRNGNGNEVET  338 (900)
T ss_pred             cCCcHHHHHHHhcCcCC----ccchhHHHHHHHhcCCEEEEecC---CceEEEeeccCCCCcceEEEcccCCcccccCCc
Confidence            99999999998765322    11234567999999999999998   478999999999999999987521        3


Q ss_pred             ceeeHHHHHHHHcCCccCCC-CCcEEEeccCCCCccccccceEecCCccccccCCHHHHHHHHHhhcCCchHHHHHHHHH
Q 001599          478 TLKSVVEYFYETYGFVIQHT-QWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDIMQT  556 (1047)
Q Consensus       478 ~~isV~~Yf~~~Y~i~L~~p-~lP~v~~g~~~~~~ylP~Elc~i~~gQ~~~~kl~~~q~~~mik~a~~~P~~R~~~I~~~  556 (1047)
                      ++|||+|||+++|||+|+|| +||||++|+.++++|||||||.|++||+++++|++.|+++||++|+.+|.+|.+.|.++
T Consensus       339 ~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~~P~~R~~~i~~~  418 (900)
T PLN03202        339 VEITVYDYFVKHRGIELRYSGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMKVLTDA  418 (900)
T ss_pred             ceEEHHHHHHHHcCccccCCCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            58999999999999999996 99999999988999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCccccccCeEEcccceEeeeEEeCCCceeecCCCCccccCCCCcceeccCceeeeCcccceeEEEEecCcch
Q 001599          557 VHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRHVQ  636 (1047)
Q Consensus       557 ~~~~~~~~~~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~p~~G~Wnl~~~kf~~~~~l~~W~~v~~~~~~~  636 (1047)
                      ++.++++.+++|++|||+|+++|++|+|||||+|+|.|+++.   .+.|++|+|||++++|++++.+++|+|++|.++. 
T Consensus       419 ~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~---~~~p~~g~Wn~~~~kf~~~~~l~~W~vv~~~~~~-  494 (900)
T PLN03202        419 LKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGE---DFFPRNGRWNFNNKKLVEPTKIERWAVVNFSARC-  494 (900)
T ss_pred             HHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCc---ccCCCCCceecCCCEecCCCccceEEEEEecCch-
Confidence            988888888999999999999999999999999999998743   2457899999999999999999999999886442 


Q ss_pred             hHHHHHHHHHHHHHHHhcCcccCCCCcccCCCCC--chhHHHHHHHHHHHHHhhhcCCCCceEEEEEeeCC-CCchhhhh
Q 001599          637 DSIARGFCFELAQMCYISGMAFNPEPVIPPISAR--PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDN-NGSLYGDL  713 (1047)
Q Consensus       637 ~~~~~~f~~~l~~~~~~~Gm~i~~~p~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~lvlvilp~~-~~~~Y~~I  713 (1047)
                        .++.|++.|.+.|+.+||.+..++.+.....+  ....+..++..++.+.++++  ..++|||||||++ +.++|+.|
T Consensus       495 --~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~qlv~vIlp~~~~~~~Y~~I  570 (900)
T PLN03202        495 --DIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLP--GPPQFLLCILPERKNSDIYGPW  570 (900)
T ss_pred             --hHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhcc--CCCeEEEEEEcCCCCcchHHHH
Confidence              57899999999999999999763322111100  01122335555555444443  4689999999974 67899999


Q ss_pred             hHhhhcccCceeEeEeecccccccHHHHHHHHHHHHHhcCccccccccccccCCCCcCCCCeEEEeeeecCCCCCCCCCC
Q 001599          714 KRICETDLGLVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP  793 (1047)
Q Consensus       714 K~~~d~~~GI~TQcv~~~~~~k~~~q~~~Nv~lKiN~KlGG~N~~l~~~~~~~~p~~~~~~tmiiG~DVtHp~~g~~~~p  793 (1047)
                      |++||+++||+||||...   +.++||++|||||||+||||+||.+..+....+|++++.+|||||+||+||+++....|
T Consensus       571 K~~~~~~~gV~TQcv~~~---~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtHp~~g~~~~p  647 (900)
T PLN03202        571 KKKNLSEFGIVTQCIAPT---RVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSHGSPGQSDVP  647 (900)
T ss_pred             HHHHhhccCcccEEeCcc---ccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeecCCCCCCCCC
Confidence            999999999999999654   35789999999999999999999987654455788888899999999999999875579


Q ss_pred             cEEEEEEecCCCCccceEEEEEeecCchhHHHHHH----------------HHhc-CCC--Cc---EEecCCCChhhHHH
Q 001599          794 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLF----------------KTWQ-DPG--TP---YIFPDGVSEGQFYQ  851 (1047)
Q Consensus       794 SiaavVaS~D~~~~~ky~~~~~~Q~~r~EiI~~l~----------------~~~~-~~~--~P---IiyRDGVSEgQf~~  851 (1047)
                      ||||||||+||+++++|.+.+++|.+++|+|++|+                ..|. +.+  .|   ||||||||||||.+
T Consensus       648 Siaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRDGVseGQ~~~  727 (900)
T PLN03202        648 SIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRDGVSESQFNQ  727 (900)
T ss_pred             ceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEecCCCHHHHHH
Confidence            99999999998889999999999999999988652                1233 222  35   89999999999999


Q ss_pred             HHHHHHHHHHHHHHhhCCCCCCCEEEEEEeecccccccccCCCCCCcCCCCCCCcCceeccCcccCCCcccEEeeeccCC
Q 001599          852 VLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI  931 (1047)
Q Consensus       852 Vl~~El~~Ik~A~~~l~~~~~P~iT~Ivv~KRHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DFyL~Sh~~~  931 (1047)
                      |+++|+++|++||++++++|+|+||||||+||||||||+.+        +.+||+||||||++||||..||||||||.++
T Consensus       728 Vl~~Ev~~i~~a~~~~~~~~~Pkit~Ivv~Krh~tRff~~~--------~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~  799 (900)
T PLN03202        728 VLNIELDQIIEACKFLDESWSPKFTVIVAQKNHHTKFFQAG--------SPDNVPPGTVVDNKICHPRNNDFYMCAHAGM  799 (900)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCcEEEEEEeccceeeeeccC--------CCCCCCCceEeccccccCCcceEEEeccccc
Confidence            99999999999999998899999999999999999999863        3589999999999999999999999999999


Q ss_pred             cccccCCeEEEEecCCCCCHHHHHHHHHHhhcccccccCccccCcHHHHHHHHHHHHhhhcCCCCCCCCCCcccCCCCCC
Q 001599          932 QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGTIGRGG 1011 (1047)
Q Consensus       932 qGTsrPthY~VL~De~~~~~d~Lq~LT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~~~~~~s~~~~~~~~~~ 1011 (1047)
                      |||||||||+||+||+++++|+||+|||+|||+|+|||++||||||||||||||+|||+||..+.++++++.+++++   
T Consensus       800 qGTarPthY~Vl~de~~~~~d~lq~lty~lc~~y~~~t~~VsvpaP~yYAhlla~r~r~~l~~~~~~~~~~~~~~~~---  876 (900)
T PLN03202        800 IGTTRPTHYHVLLDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGQFMKFEDMSETSSSHGGIT---  876 (900)
T ss_pred             ccCCcCceEEEEECCCCCCHHHHHHHHHHHhhhhcccCCceecchhHHHHHHHHHHhhhhccccCCccccccccccC---
Confidence            99999999999999999999999999999999999999999999999999999999999998543222221111110   


Q ss_pred             CCCCCCCccCCCCCCCCCCCCCcccccccccCeeeC
Q 001599         1012 MGGGVGARSTRGPGVGAAVRPLPALKENVKRVMFYC 1047 (1047)
Q Consensus      1012 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 1047 (1047)
                            +  +    ...+...+++||+||+++||||
T Consensus       877 ------~--~----~~~~~~~~~~~h~~~~~~Mfy~  900 (900)
T PLN03202        877 ------S--A----GAVPVPELPRLHENVASSMFFC  900 (900)
T ss_pred             ------C--C----CccccccccccchhhcCCeeeC
Confidence                  0  0    1111335788999999999998

>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily Back     alignment and domain information
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes Back     alignment and domain information
>cd02826 Piwi-like Piwi-like: PIWI domain Back     alignment and domain information
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] Back     alignment and domain information
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria Back     alignment and domain information
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily Back     alignment and domain information
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille Back     alignment and domain information
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily Back     alignment and domain information
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO Back     alignment and domain information
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily Back     alignment and domain information
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Back     alignment and domain information
>PF12764 Gly-rich_Ago1: Glycine-rich region of argonaut; InterPro: IPR024357 This domain is found in the N terminus of some argonaut proteins Back     alignment and domain information
>COG4371 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13032 DUF3893: Domain of unknown function (DUF3893) Back     alignment and domain information
>smart00157 PRP Major prion protein Back     alignment and domain information
>PRK11617 endonuclease V; Provisional Back     alignment and domain information
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1047
4f3t_A861 Human Argonaute-2 - Mir-20a Complex Length = 861 0.0
4ei1_A859 Crystal Structure Of Human Argonaute2 Length = 859 0.0
3vna_A154 Structural Insights Into Small Rna Sorting And Mrna 2e-77
4g0p_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 3e-76
3vnb_A155 Structural Insights Into Small Rna Sorting And Mrna 4e-74
4g0x_A147 Crystal Structure Of Arabidopsis Thaliana Ago1 Mid 3e-73
2yhb_A437 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 3e-45
4f1n_A1046 Crystal Structure Of Kluyveromyces Polysporus Argon 3e-42
4g0o_A139 Crystal Structure Of Arabidopsis Thaliana Ago5 Mid 4e-37
1r4k_A169 Solution Structure Of The Drosophila Argonaute 1 Pa 1e-28
2yha_A388 Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi 2e-28
1si2_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 1e-26
1si3_A149 Crystal Structure Of The Paz Domain Of Human Eif2c1 4e-25
4g0m_A150 Crystal Structure Of Arabidopsis Thaliana Ago2 Mid 8e-12
3luc_A138 Crystal Structure Of Mid Domain From Hago2 Length = 5e-09
3luk_A138 Crystal Structure Of Mid Domain From Hago2 Length = 6e-08
1r6z_P509 The Crystal Structure Of The Argonaute2 Paz Domain 5e-07
1vyn_A143 Structure And Nucleic Acid Binding Of The Drosophil 6e-07
1t2r_A123 Structural Basis For 3' End Recognition Of Nucleic 9e-06
3mj0_A124 Crystal Structure Of Drosophia Ago-Paz Domain In Co 1e-05
2xdy_A145 Crystal Structure Of The N. Crassa Qde-2 Ago Mid Do 1e-04
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/821 (42%), Positives = 499/821 (60%), Gaps = 45/821 (5%)
Query: 202 PLRPGRGSTGTRCIVKANHFFAELPDKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRES 261
           P RP  G++G    ++AN F  ++P  D++ Y++ I PE   R VNR ++E +V+ ++  
Sbjct: 28  PPRPDFGTSGRTIKLQANFFEMDIPKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQ 87
Query: 262 HLGKRLPAYDGRKSLYTAGPLPFLSK--EFRITLLXXXXXXXXXREREFKVVIKLAARAD 319
             G R P +DGRK+LYTA PLP      E  +TL          ++R FKV IK  +   
Sbjct: 88  IFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVTL------PGEGKDRIFKVSIKWVSCVS 141
Query: 320 LHHLGLFLQGRQADAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESW 379
           L  L   L GR    P E +Q LD+V+R LP+ RY PVGRSF++   G   PLG G E W
Sbjct: 142 LQALHDALSGRLPSVPFETIQALDVVMRHLPSMRYTPVGRSFFTASEGCSNPLGGGREVW 201
Query: 380 RGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVQQLLNR---DVSSRPLSDADRVKIK 436
            GF+QS+RP+   + LNID+S+TAF +  PVI+FV ++L+    +   +PL+D+ RVK  
Sbjct: 202 FGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFT 261
Query: 437 KALRGVRVEVTHRGNMRRKYRISGLTSQTTGELTFPVD-ESGTLK--SVVEYFYETYGFV 493
           K ++G++VE+TH G M+RKYR+  +T +     TFP+  ESG     +V +YF + +  V
Sbjct: 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLV 321
Query: 494 IQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPHERERDI 553
           +++   PCLQVG +Q+  YLP+EVC IV GQR  K+L + Q + +++ T +   +R+ +I
Sbjct: 322 LRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQEEI 381
Query: 554 MQTVHHNAYHEDPYAREFGIKISEKLASVEARILPAPWLKYHDTGKEKD-CLPQVGQWNM 612
            + +   +++ DPY REFGI + +++  V  R+L  P + Y   G+ K    P  G W+M
Sbjct: 382 SKLMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILY--GGRNKAIATPVQGVWDM 439
Query: 613 MNKKMVNGGTVNHWICINFS--RHVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISAR 670
            NK+   G  +  W    F+  R   +   + F  +L ++   +GM    +P     +  
Sbjct: 440 RNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQG 499
Query: 671 PEHVEKVLKTRYHDAMTKLGQGKELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLT 730
            + VE + +   H   T  G    L L++VILP     +Y ++KR+ +T LG+ +QC   
Sbjct: 500 ADSVEPMFR---HLKNTYAG----LQLVVVILPGKT-PVYAEVKRVGDTVLGMATQCVQM 551
Query: 731 KHVFKMSKQYMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGED 790
           K+V + + Q ++N+ LKINVK+GG N +L   + +  P V  +P I  GADVTHP  G+ 
Sbjct: 552 KNVQRTTPQTLSNLCLKINVKLGGVNNIL---LPQGRPPVFQQPVIFLGADVTHPPAGDG 608
Query: 791 SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL-----------FKTWQDPGTPYI 839
             PSIAAVV S D     +Y   V  Q HRQE+IQDL           +K+ +   T  I
Sbjct: 609 KKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLAAMVRELLIQFYKSTRFKPTRII 667
Query: 840 F-PDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNA 898
           F  DGVSEGQF QVL +EL AIR+AC  LE +YQP +TF+VVQKRHHTRLF  + ++R  
Sbjct: 668 FYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNER-- 725
Query: 899 VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLT 958
           V +SGNI  GT VD+KI HPTEFDFYLCSHAGIQGTSRP+HYHVLWD+N+F++D LQ LT
Sbjct: 726 VGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILT 785
Query: 959 NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 999
             LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct: 786 YQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 826
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 Back     alignment and structure
>pdb|3VNA|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Mid Domains Length = 154 Back     alignment and structure
>pdb|4G0P|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain In Complex With Ump Length = 147 Back     alignment and structure
>pdb|3VNB|A Chain A, Structural Insights Into Small Rna Sorting And Mrna Binding By Arabidopsis Ago Domains Length = 155 Back     alignment and structure
>pdb|4G0X|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago1 Mid Domain Length = 147 Back     alignment and structure
>pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 Back     alignment and structure
>pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 Back     alignment and structure
>pdb|4G0O|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago5 Mid Domain Length = 139 Back     alignment and structure
>pdb|1R4K|A Chain A, Solution Structure Of The Drosophila Argonaute 1 Paz Domain Length = 169 Back     alignment and structure
>pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 Back     alignment and structure
>pdb|1SI2|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Of Deoxynucleotide Overhang Length = 149 Back     alignment and structure
>pdb|1SI3|A Chain A, Crystal Structure Of The Paz Domain Of Human Eif2c1 In Complex With A 9-Mer Sirna-Like Duplex Length = 149 Back     alignment and structure
>pdb|4G0M|A Chain A, Crystal Structure Of Arabidopsis Thaliana Ago2 Mid Domain Length = 150 Back     alignment and structure
>pdb|3LUC|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|3LUK|A Chain A, Crystal Structure Of Mid Domain From Hago2 Length = 138 Back     alignment and structure
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A Mbp Fusion) Length = 509 Back     alignment and structure
>pdb|1T2R|A Chain A, Structural Basis For 3' End Recognition Of Nucleic Acids By The Drosophila Argonaute 2 Paz Domain Length = 123 Back     alignment and structure
>pdb|3MJ0|A Chain A, Crystal Structure Of Drosophia Ago-Paz Domain In Complex With 3'-End 2'-O-Methylated Rna Length = 124 Back     alignment and structure
>pdb|2XDY|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid Domain Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1047
d1yvua2392 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 1e-102
d1w9ha1316 c.55.3.10 (A:93-408) Hypothetical protein AF1318 { 9e-73
d1u04a2447 c.55.3.10 (A:324-770) Argonaute homologue PF0537 { 2e-64
d1si2a_126 b.34.14.1 (A:) Eukaryotic translation initiation f 1e-46
d1t2sa_123 b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila 5e-46
d1u04a1322 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py 5e-14
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

 Score =  324 bits (831), Expect = e-102
 Identities = 58/395 (14%), Positives = 122/395 (30%), Gaps = 63/395 (15%)

Query: 623 VNHWICINFSRHVQDSI-ARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTR 681
           V     I+ S + +       F  EL       G+    +     ++   E  ++ L   
Sbjct: 37  VLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPV 96

Query: 682 YHDAMTKLGQGKELDLLIVILPDNNGS-------LYGDLKRICETDLGLVSQCCLTKHVF 734
            +         K++DL+IV L +           LY  +KR       + SQ  L + + 
Sbjct: 97  INKI-------KDVDLVIVFLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLK 148

Query: 735 KMSKQYMA-NVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSP 793
             + +++  NVA ++  K G     L +        +  +     G D++       +  
Sbjct: 149 NENLKFVLLNVAEQVLAKTGNIPYKLKE--------IEGKVDAFVGIDISRITRDGKTVN 200

Query: 794 SIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK---------TWQDPGTPYIFPDGV 844
           ++A         E+ +Y  L    A  ++L +              ++      +  DG 
Sbjct: 201 AVAFTKIFNSKGELVRYY-LTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDGR 259

Query: 845 SEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGN 904
                      E+ A +K        Y   +  + + KR++ R F+N             
Sbjct: 260 LYRD-------EVAAFKKYG----ELYGYSLELLEIIKRNNPRFFSN-----------EK 297

Query: 905 ILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYT 964
            + G           +       +   +GT +P     ++ E     + L S   +L   
Sbjct: 298 FIKGYFYK----LSEDSVILATYNQVYEGTHQPIKVRKVYGELPV--EVLCSQILSLTLM 351

Query: 965 YARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 999
                + + +    +Y+          +EP   + 
Sbjct: 352 NYSSFQPIKLPATVHYSDKITKLMLRGIEPIKKEG 386
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1047
d1yvua2392 Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax 100.0
d1w9ha1316 Hypothetical protein AF1318 {Archaeoglobus fulgidu 100.0
d1u04a2447 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1u04a1322 Argonaute homologue PF0537 {Pyrococcus furiosus [T 100.0
d1si2a_126 Eukaryotic translation initiation factor 2C 1, EIF 99.97
d1t2sa_123 Argonaute 2 {Fruit fly (Drosophila melanogaster) [ 99.96
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: PIWI domain
domain: Argonaute homologue Aq 1447
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=0  Score=505.11  Aligned_cols=329  Identities=17%  Similarity=0.143  Sum_probs=257.7

Q ss_pred             CCCEEEEEEECC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf             104149999368-6126899999999999988429646899920689999055999999999999865069998519999
Q 001599          622 TVNHWICINFSR-HVQDSIARGFCFELAQMCYISGMAFNPEPVIPPISARPEHVEKVLKTRYHDAMTKLGQGKELDLLIV  700 (1047)
Q Consensus       622 ~i~~W~~v~~~~-~~~~~~~~~f~~~l~~~~~~~Gi~i~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~lil~  700 (1047)
                      .+..|.+|.+.. +..+..+++|+++|.+.|+.+||++..+|..........+.+..+.+.+++       ...+++++|
T Consensus        36 ~~~~~~~i~~~~~~~~~~~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~v  108 (392)
T d1yvua2          36 DVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLIPVINK-------IKDVDLVIV  108 (392)
T ss_dssp             SEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEECSSTTHHHHHHHHHHTT-------TSSCSEEEE
T ss_pred             CCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCHHHHHHHHHHH-------CCCCCEEEE
T ss_conf             6344247899996310667999999999999862926457886713127751159999999840-------267778999


Q ss_pred             EEECCCC-------CHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9518998-------415555576211357112767312113454879-99999999873295233222010147777579
Q 001599          701 ILPDNNG-------SLYGDLKRICETDLGLVSQCCLTKHVFKMSKQY-MANVALKINVKVGGRNTVLVDAISRRIPLVSD  772 (1047)
Q Consensus       701 ilp~~~~-------~~Y~~IK~~~d~~~GI~TQci~~~~~~k~~~q~-~~Ni~lKiN~KlGG~N~~l~~~~~~~~p~~~~  772 (1047)
                      |++++..       ++|..||+.| ++.||+||||+.+++.+.+.++ +.||+||||+||||+||.|.+.     +   .
T Consensus       109 i~~~~~~~~~~~~~~~Y~~IK~~~-~~~gIptQ~i~~~tl~~~~~~~~~~NIalqinaKlGGipw~l~~~-----~---~  179 (392)
T d1yvua2         109 FLEEYPKVDPYKSFLLYDFVKREL-LKKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKLKEI-----E---G  179 (392)
T ss_dssp             EEC----------CHHHHHHHHHH-HHTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEESCC-----T---T
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCCC-----C---C
T ss_conf             976888866555404799999998-549966489886661689835899999999999849834688788-----9---9


Q ss_pred             CCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHH----HHCCCC--CC---EEECCC
Q ss_conf             994999653048999999998189999730788866147899960571358999999----842999--94---896389
Q 001599          773 RPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFK----TWQDPG--TP---YIFPDG  843 (1047)
Q Consensus       773 ~~tmiiG~DVsHp~~g~~~~pSiaavVaS~d~~~~~ky~~~~~~Q~~r~EiI~~l~~----~~~~~~--~P---IiyRDG  843 (1047)
                      .+|||||+||+|++++.. .++++|++++.|......+......|..++|++.++.+    .|++.+  .|   ||||||
T Consensus       180 ~~tmiIGiDv~h~~~~~~-~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ee~~~~~~~~~l~~~~~~~~~~P~rIIi~RdG  258 (392)
T d1yvua2         180 KVDAFVGIDISRITRDGK-TVNAVAFTKIFNSKGELVRYYLTSYPAFGEKLTEKAIGDVFSLLEKLGFKKGSKIVVHRDG  258 (392)
T ss_dssp             CCSEEEEECEEECCCSSS-CCCEEEEEEEECTTSCEEEEEEEEECSCTTHHHHHHHHHHHHHHHHTTCCTTCEEEEEESS
T ss_pred             CCEEEEEEEEEECCCCCC-CCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf             975999999871588898-4638999999868997789998854776078999999999999999649998669999588


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCE
Q ss_conf             99256999999999999999995099999989999993201232122489997867788987672001576557985528
Q 001599          844 VSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDF  923 (1047)
Q Consensus       844 VSEgq~~~Vl~~El~~Ik~A~~~~~~~~~P~it~Ivv~KrHhtRff~~~~~~~~~~~~~~N~~pGTVVD~~It~p~~~DF  923 (1047)
                      +++       ++|+++|++||.++    .|+|+||+|+||||+|||+.+           |+++||+|+    .+..++|
T Consensus       259 ~~~-------~~El~~i~~a~~~~----~pki~~IvV~Krh~~Rff~~~-----------~~~~Gt~v~----~~~~~~~  312 (392)
T d1yvua2         259 RLY-------RDEVAAFKKYGELY----GYSLELLEIIKRNNPRFFSNE-----------KFIKGYFYK----LSEDSVI  312 (392)
T ss_dssp             CCC-------HHHHHHHHHHHHHH----TCEEEEEEEECSSCCCEECSC-----------SCCTTEEEE----BSSSEEE
T ss_pred             CCC-------HHHHHHHHHHHHHC----CCCEEEEEEEECCCEEECCCC-----------CCCCCCEEE----CCCCEEE
T ss_conf             773-------79999999999864----995899999815882656789-----------999998771----7989299


Q ss_pred             EEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             962046874433587379994399889778999999843055423576446757888999999986402777
Q 001599          924 YLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPE  995 (1047)
Q Consensus       924 yL~Sh~~~qGTsrPthY~VL~De~~~~~d~lq~lT~~LCy~y~r~t~sVSip~P~yYA~l~a~Rar~~~~~~  995 (1047)
                      ||+||.++|||+||+||+||+||+  +.|+||++||+|||+|+|||++||+|+|+||||++|+|+|.++++.
T Consensus       313 ~~~s~~~~qGT~rP~~Y~vl~d~~--~~d~l~~lt~~Lc~l~~~~t~svslPapi~YA~~lA~~~r~~~~p~  382 (392)
T d1yvua2         313 LATYNQVYEGTHQPIKVRKVYGEL--PVEVLCSQILSLTLMNYSSFQPIKLPATVHYSDKITKLMLRGIEPI  382 (392)
T ss_dssp             ECCSCCCSTTCCCCEEEEEEECSS--CHHHHHHHHHHGGGGGCCSSSCCCSCTTTTTHHHHHHHHHTCSSCC
T ss_pred             EEECCCCCCCCCCCCEEEEECCCC--CHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHCCCCC
T ss_conf             997688578777885899988989--9899999999977512671899800779999999999975117865
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure