Citrus Sinensis ID: 001623

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040--

MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQGTIVFLTFV

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccEEEEEcc

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEcHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHEcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHcccHEEccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccHHHcccEEEEEEc

medqplapetttrrskrktngastenqertsdasdqmepsgqrehspddfeeirpktkrsrasegtaaSAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAkyylqgesldeidvDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVEcqngplfdkVLFDKCMDYIialsctpprVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEkkkrvegprvesLNKRLSMTHKNITDLEDMMRKIFTGLFVhryrdidpnirmSCIQSLGVWILSYPSFFLQDLYLKYLGwtlndksasvRKSSVLALQNLyevddnvptlglFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRhqllpdddlgplydlliddppEIRRAIGELVYDHLIAQkfnssqsglkgkdndsseVHLGRMLQILRefsadpilsiyVIDDVWEYMKAMKDWKCIISMlldenplidlndddaTNLIRLLSASVKKAVgerivpasdnrkpyynKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELqlskavpieSLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEyflnspseveegsrvGNQLACRVCTILAEMWCLFrmtnfsstklsrlgycpdipVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAidsvpkeylgpeiISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVeisrsddkslteKSFVECKELSsrlsgtyvgaarnkhRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHfvsklptpdiLDILKDVQirtdnvnmdedpsgwrpFKSFVETLREKytknegiqGTIVFLTFV

medqplapetttrrskrktngastenqertsdasdqmepsgqrehspddfeeirpktkrsrasegtaasaqsIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLarrgevedyqsskrkeLKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQREttqrqlnaekkkrvegprveslnkrlsmthknitdleDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQnlyevddnvptLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKfnssqsglkgkdNDSSEVHLGRMLQILrefsadpilSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSasvkkavgerivpasdnrkpyynkaqkevfennkreiTRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSaesqgelqdsaRKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLnisdetededvNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHaveisrsddkslteksfveckelssrlsgtyvgaarnkhrsdiLKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDnvnmdedpsgwrpFKSFVETLREkytknegiqgtIVFLTFV

MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIdvddvvvALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQllpdddlgplydlliddppEIRRAIGELVYDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDkliaklksaikaVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFlllnlylylAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQGTIVFLTFV

************************************************************************IELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVE*********LKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLG***********************************NITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF*****************HLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIV***********************EITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCS******************EDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP*****GSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNIS*********KEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVE**************VECKEL**RLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQGTIVFLTF*

*****************************************************************************IEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQ**********************************ITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLI**********************LGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGER************************REITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLH****************LLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWC****************YCPDIPVLQKFWKLCEQQL**********************AVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHA***************FVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQ*****************FKSFVE***************IVFLTFV

**********************************************************************QSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQ********************VESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSS**********SSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNS**********GNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQGTIVFLTFV

*************************************************************************ELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKF************DSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETLREKYTKNEGIQGTIVFLTFV

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1042	2.2.26 [Sep-21-2011]
Q8WVM7		1258	Cohesin subunit SA-1 OS=H	yes	no	0.908	0.752	0.253	5e-76
Q9D3E6		1258	Cohesin subunit SA-1 OS=M	yes	no	0.908	0.752	0.253	3e-75
Q9UJ98		1225	Cohesin subunit SA-3 OS=H	no	no	0.833	0.709	0.259	1e-70
Q9DGN1		1265	Cohesin subunit SA-1 OS=X	N/A	no	0.919	0.757	0.249	1e-70
Q8N3U4		1231	Cohesin subunit SA-2 OS=H	no	no	0.856	0.724	0.252	3e-69
O35638		1231	Cohesin subunit SA-2 OS=M	no	no	0.856	0.724	0.252	1e-68
Q99M76		1256	Cohesin subunit SA-3 OS=R	no	no	0.831	0.689	0.264	1e-65
Q9DGN0		1194	Cohesin subunit SA-2 OS=X	N/A	no	0.842	0.735	0.253	3e-65
O70576		1240	Cohesin subunit SA-3 OS=M	no	no	0.900	0.756	0.256	1e-64
O13816		962	Cohesin subunit psc3 OS=S	yes	no	0.523	0.566	0.240	4e-40

>sp\|Q8WVM7\|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3	Back alignment and function desciption

 Score =  286 bits (732), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 254/1001 (25%), Positives = 461/1001 (46%), Gaps = 54/1001 (5%)

Query: 59   RSRASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEAC 118
            R RA+     + +   ++L EV+K     +  VV  W+E Y++D   A+ +L+    +  
Sbjct: 69   RGRANGHPQQNGEGEPVTLFEVVKLGKSAMQSVVDDWIESYKQDRDIALLDLINFFIQCS 128

Query: 119  GAKYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVE 178
            G +  ++ E    +   +++  +         +   +    + K F+ N   F   L+ +
Sbjct: 129  GCRGTVRIEMFRNMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQ 188

Query: 179  CQNGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQ 238
            CQ   ++D+ + D  +  +  LS +  R +R  ++L  ++L+T+ ++VA  L   ++ TQ
Sbjct: 189  CQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQ 248

Query: 239  RQLNAEKKKRV---EGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIR 295
            RQ  AE+ K +      R+E L ++     +N  ++E+MM  IF G+FVHRYRD    IR
Sbjct: 249  RQYEAERNKMIGKRANERLELLLQKRKELQENQDEIENMMNSIFKGIFVHRYRDAIAEIR 308

Query: 296  MSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLG 355
              CI+ +GVW+  Y   FL D YLKY+GWTL+D+   VR   + ALQ+LY   +  P L 
Sbjct: 309  AICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKCLKALQSLYTNRELFPKLE 368

Query: 356  LFTERFSNRMIELADDIDVSVAVCAIGLVKQLLR--HQLLPDDDLGPLYDLLIDDPPEIR 413
            LFT RF +R++ +  D +  VAV AI LV  +L    + L ++D   +Y L+      + 
Sbjct: 369  LFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLVYSAHRPVA 428

Query: 414  RAIGELVYDHLIAQKFNSSQSGL-KGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDV 472
             A GE ++  L ++    ++  L K +  +S   +L RML +    S     + Y++D +
Sbjct: 429  VAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLFFLESELHEHAAYLVDSL 488

Query: 473  WEYMKA-MKDWKCIISMLLDENPLID---LNDDDATNLIRLLSASVKKAVGERIVPASDN 528
            WE  +  +KDW+C+  +LL+E P+     ++D   + LI L+  ++++A           
Sbjct: 489  WESSQELLKDWECMTELLLEE-PVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGT 547

Query: 529  RKPYYNKAQKEVFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLK 588
             K      +++   +++ ++T   +   P LL K+ AD  KV +L+ I  +  LE+YS  
Sbjct: 548  GKRVLTAKERKTQIDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTG 607

Query: 589  RDEKSFETILQLVNDAFFKHGEKEALRSCVKAIK-FCSAESQGELQ-DSARKNLKDVEDK 646
            R EK  + +L+ +     KH E + L +C K     CS E   + + D AR  L    D+
Sbjct: 608  RMEKHLDALLKQIKFVVEKHVESDVLEACSKTYSILCSEEYTIQNRVDIARSQLI---DE 664

Query: 647  LIAKLKSAIKAVL------DGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHT-- 698
             + +   +++ +L      D DD Y++L  LKRL     +  +    L+ +   +L T  
Sbjct: 665  FVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTSFHNAHDLTKWDLFGNCYRLLKTGI 724

Query: 699  -FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSP 757
                +  ++V   L   +  + W L  I +     E     LL+ R T+   L       
Sbjct: 725  EHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKE----DLLVLRKTVKSFLAVCQQCL 780

Query: 758  SEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQ 817
            S V   + V  Q    +C +L  M    ++       L  L + PD  +  +        
Sbjct: 781  SNV--NTPVKEQAFMLLCDLL--MIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDH 836

Query: 818  LNISDETEDEDVNKEYIEETN-------RDAVMIAAAKLIAIDSVPKEYLGPEIISHFVM 870
            + I  + E++ +  +  +E N       R  ++ A +KLI  D V   +   +I  H++ 
Sbjct: 837  VFIDQDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDM-HAAADIFKHYMK 895

Query: 871  HGTNVAEIVKHLITVLKKKDE-DVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECK 929
            +  +  +I+K  ++  ++ D+   +   + +L++ +     E   + D++    S +  K
Sbjct: 896  YYNDYGDIIKETLSKTRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGI--K 953

Query: 930  ELSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL--------DAPKQLSFLECAVLHFV 981
            EL+ R + T+ G  + K R  +    K+GI++AF           P  L+FLE  +  F 
Sbjct: 954  ELARRFALTF-GLDQIKTREAVATLHKDGIEFAFKYQNQKGQEYPPPNLAFLE-VLSEFS 1011

Query: 982  SKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVETL 1022
            SKL   D   +   ++       M+     W P  S+  +L
Sbjct: 1012 SKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRNSL 1052

Component of cohesin complex, a complex required for the cohesion of sister chromatids after DNA replication. The cohesin complex apparently forms a large proteinaceous ring within which sister chromatids can be trapped. At anaphase, the complex is cleaved and dissociates from chromatin, allowing sister chromatids to segregate. The cohesin complex may also play a role in spindle pole assembly during mitosis.
Homo sapiens (taxid: 9606)

>sp\|Q9D3E6\|STAG1_MOUSE Cohesin subunit SA-1 OS=Mus musculus GN=Stag1 PE=1 SV=3	Back alignment and function description

>sp\|Q9UJ98\|STAG3_HUMAN Cohesin subunit SA-3 OS=Homo sapiens GN=STAG3 PE=1 SV=2	Back alignment and function description

>sp\|Q9DGN1\|STAG1_XENLA Cohesin subunit SA-1 OS=Xenopus laevis GN=stag1 PE=1 SV=1	Back alignment and function description

>sp\|Q8N3U4\|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3	Back alignment and function description

>sp\|O35638\|STAG2_MOUSE Cohesin subunit SA-2 OS=Mus musculus GN=Stag2 PE=1 SV=3	Back alignment and function description

>sp\|Q99M76\|STAG3_RAT Cohesin subunit SA-3 OS=Rattus norvegicus GN=Stag3 PE=2 SV=1	Back alignment and function description

>sp\|Q9DGN0\|STAG2_XENLA Cohesin subunit SA-2 OS=Xenopus laevis GN=stag2 PE=1 SV=1	Back alignment and function description

>sp\|O70576\|STAG3_MOUSE Cohesin subunit SA-3 OS=Mus musculus GN=Stag3 PE=1 SV=2	Back alignment and function description

>sp\|O13816\|SCC3_SCHPO Cohesin subunit psc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psc3 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1042
255559372		1106	stromal antigen, putative [Ricinus commu	0.981	0.924	0.781	0.0
296086648		1144	unnamed protein product [Vitis vinifera]	0.990	0.902	0.779	0.0
359479838		1143	PREDICTED: cohesin subunit SA-1-like [Vi	0.989	0.902	0.779	0.0
147777089		1616	hypothetical protein VITISV_016664 [Viti	0.970	0.625	0.743	0.0
449516549		1123	PREDICTED: cohesin subunit SA-1-like, pa	0.965	0.895	0.748	0.0
449435958		1866	PREDICTED: cohesin subunit SA-1-like [Cu	0.965	0.539	0.748	0.0
356505485		1126	PREDICTED: cohesin subunit SA-1-like [Gl	0.965	0.893	0.731	0.0
297824911		1085	sister-chromatide cohesion protein 3 [Ar	0.968	0.929	0.692	0.0
18407498		1098	cohesin complex subunit SA-1/2 [Arabidop	0.955	0.907	0.691	0.0
21537070		1098	putative sister-chromatide cohesion prot	0.955	0.907	0.690	0.0

>gi\|255559372\|ref\|XP_002520706.1\| stromal antigen, putative [Ricinus communis] gi\|223540091\|gb\|EEF41668.1\| stromal antigen, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1662 bits (4304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 807/1032 (78%), Positives = 917/1032 (88%), Gaps = 9/1032 (0%)

Query: 1    MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRS 60
            M+D P  PET++ R+KR  +   T+NQER SDASD      +RE SPDDFE++RPK KR+
Sbjct: 1    MDDAPQDPETSSGRAKR--SRIRTQNQERVSDASDDGPNQAEREASPDDFEDVRPKAKRN 58

Query: 61   RASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGA 120
            R SE      Q  + SLIEVIKGNGK IPQ VKLWVE YEK+ KPA+ ELLTMLFEACGA
Sbjct: 59   RPSE-----LQKSDQSLIEVIKGNGKNIPQAVKLWVEEYEKNQKPAMVELLTMLFEACGA 113

Query: 121  KYYLQGESLDEIDVDDVVVALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQ 180
            K+ ++ E LDE DVDDVVVALVNLAR+GEVEDYQSSKRK++KNFKDNLVSFWDNLVVECQ
Sbjct: 114  KFCIKEELLDETDVDDVVVALVNLARKGEVEDYQSSKRKDVKNFKDNLVSFWDNLVVECQ 173

Query: 181  NGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQ 240
            NGPLFDKVLFDKCMDYIIALSCTPPRVYRQ+AS +GLQLVTSFI+VAK LGAQRETTQRQ
Sbjct: 174  NGPLFDKVLFDKCMDYIIALSCTPPRVYRQIASTIGLQLVTSFITVAKTLGAQRETTQRQ 233

Query: 241  LNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQ 300
            LNAEKKKR +GPRVESLNKRLSMTH+ I  LEDMMRKIFTGLFVHRYRDIDPNIRMSCI+
Sbjct: 234  LNAEKKKRTDGPRVESLNKRLSMTHEKIVVLEDMMRKIFTGLFVHRYRDIDPNIRMSCIE 293

Query: 301  SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360
            SLGVWILSYPS FLQDLYLKYLGWTLNDKSA VRK+S+LALQ+LY+VDDNVPTLGLFTER
Sbjct: 294  SLGVWILSYPSLFLQDLYLKYLGWTLNDKSAGVRKASILALQSLYDVDDNVPTLGLFTER 353

Query: 361  FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPPEIRRAIGELV 420
            FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDP +IRRAIGELV
Sbjct: 354  FSNRMIELADDIDVSVAVCAIGLVKQLLRHQLLPDDDLGPLYDLLIDDPADIRRAIGELV 413

Query: 421  YDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMK 480
            YDHLIAQK NSSQSG +G +N  SEVHL RMLQILREFS +PILS YV+DDVWEYMKAMK
Sbjct: 414  YDHLIAQKLNSSQSGSRGNEN-GSEVHLSRMLQILREFSTEPILSTYVVDDVWEYMKAMK 472

Query: 481  DWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKEV 540
            DWKCIISMLLDENPL++L DDDATNL+RLL ASV+KAVGERIVPASDNRK YYNKAQKEV
Sbjct: 473  DWKCIISMLLDENPLVELTDDDATNLVRLLFASVRKAVGERIVPASDNRKQYYNKAQKEV 532

Query: 541  FENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQL 600
            FENN+++IT AMMKNYP LLRKFMADKAK+PSL++I++HM LELYSLKR E++F+ +LQL
Sbjct: 533  FENNRKDITIAMMKNYPLLLRKFMADKAKIPSLVEIIVHMNLELYSLKRQEQNFKNVLQL 592

Query: 601  VNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDKLIAKLKSAIKAVLD 660
            + ++FFKHGEKEALRSCVKAI FCS ESQGEL+D A   LK++ED+LIAKLKSA+K  + 
Sbjct: 593  MKESFFKHGEKEALRSCVKAILFCSTESQGELKDFAGNKLKNLEDELIAKLKSAMKEAV- 651

Query: 661  GDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFLLLNLYLYLAW 720
            G DEYSLLVNLKRLYELQLSKAVPIES++ED+V ++H+FRN+D++VVSFLLLN+YL++AW
Sbjct: 652  GGDEYSLLVNLKRLYELQLSKAVPIESIFEDIVKVIHSFRNVDDDVVSFLLLNMYLHVAW 711

Query: 721  SLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAE 780
            SL SI+N+ET+SEA L+SLL KRN LFEELEYFL +PSE  + ++  N LACRVC ILAE
Sbjct: 712  SLQSIVNSETISEAQLSSLLSKRNILFEELEYFLGTPSEEAKVNKYSNHLACRVCIILAE 771

Query: 781  MWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRD 840
             WCLFR TNFSSTKL  LG CPD  V+QKFW+LCEQQLNISDET+DED NKEYIEETNRD
Sbjct: 772  AWCLFRHTNFSSTKLESLGCCPDTSVVQKFWELCEQQLNISDETDDEDTNKEYIEETNRD 831

Query: 841  AVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLEA 900
            AVMIAAAKLIA D+V KE L P IISHFVMHGT+VAEIVKHL+T++KKKD+D+S IFLEA
Sbjct: 832  AVMIAAAKLIASDTVSKESLAPGIISHFVMHGTSVAEIVKHLLTIIKKKDDDISNIFLEA 891

Query: 901  LKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGID 960
            LKRA+Q H  E+S+SDD S+  KSF +CK+L++RLSGT++GAARNKHR+DILK +KEGI+
Sbjct: 892  LKRAHQWHLEELSKSDDGSVLRKSFQDCKDLAARLSGTFMGAARNKHRADILKIIKEGIE 951

Query: 961  YAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFVE 1020
            YAF DAPKQLSFLE A+LHFVSKLPTPD+L+ILKDVQ RT+NVN DEDPSGWRP+ +FV+
Sbjct: 952  YAFKDAPKQLSFLESAMLHFVSKLPTPDVLEILKDVQSRTENVNTDEDPSGWRPYFTFVD 1011

Query: 1021 TLREKYTKNEGI 1032
             LREKY KNEG+
Sbjct: 1012 NLREKYAKNEGL 1023

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|296086648\|emb\|CBI32283.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359479838\|ref\|XP_002270509.2\| PREDICTED: cohesin subunit SA-1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147777089\|emb\|CAN67841.1\| hypothetical protein VITISV_016664 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449516549\|ref\|XP_004165309.1\| PREDICTED: cohesin subunit SA-1-like, partial [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449435958\|ref\|XP_004135761.1\| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356505485\|ref\|XP_003521521.1\| PREDICTED: cohesin subunit SA-1-like [Glycine max]	Back alignment and taxonomy information

>gi\|297824911\|ref\|XP_002880338.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata] gi\|297326177\|gb\|EFH56597.1\| sister-chromatide cohesion protein 3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18407498|ref|NP_566119.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana] gi|5123720|emb|CAB45374.1| stromalin protein [Arabidopsis thaliana] gi|17380918|gb|AAL36271.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197313|gb|AAC63652.2| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20197564|gb|AAM15132.1| putative putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|20258987|gb|AAM14209.1| putative sister-chromatide cohesion protein [Arabidopsis thaliana] gi|330255826|gb|AEC10920.1| cohesin complex subunit SA-1/2 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21537070\|gb\|AAM61411.1\| putative sister-chromatide cohesion protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1042
TAIR\|locus:2043318		1098	SCC3 "sister-chromatid cohesio	0.980	0.930	0.647	0.0
UNIPROTKB\|F1P9C8		1258	STAG1 "Uncharacterized protein	0.905	0.750	0.251	1.8e-73
UNIPROTKB\|F1MC39		1258	STAG1 "Uncharacterized protein	0.905	0.750	0.251	2.3e-73
UNIPROTKB\|Q6P275		1221	STAG1 "STAG1 protein" [Homo sa	0.905	0.773	0.250	3.2e-73
UNIPROTKB\|Q8WVM7		1258	STAG1 "Cohesin subunit SA-1" [	0.905	0.750	0.250	3.8e-73
RGD\|1310744		1258	Stag1 "stromal antigen 1" [Rat	0.905	0.750	0.250	3.8e-73
MGI\|MGI:1098658		1258	Stag1 "stromal antigen 1" [Mus	0.905	0.750	0.250	8e-73
UNIPROTKB\|F1NYY6		1273	STAG1 "Uncharacterized protein	0.907	0.743	0.250	8.4e-73
UNIPROTKB\|Q9DGN1		1265	stag1 "Cohesin subunit SA-1" [	0.885	0.729	0.243	7.2e-70
UNIPROTKB\|E1B9B0		1284	STAG3 "Uncharacterized protein	0.895	0.726	0.252	1.7e-69

TAIR\|locus:2043318 SCC3 "sister-chromatid cohesion protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3430 (1212.5 bits), Expect = 0., P = 0.
 Identities = 669/1034 (64%), Positives = 804/1034 (77%)

Query:     1 MEDQPLAPETTTRRSKRKTNGASTENQERTSDASDQMEPSGQREHSPDDFEEIRPKTKRS 60
             MED P   + +    + + + +    +   S   +Q   S Q E   DDF+E RPK KRS
Sbjct:     1 MEDSPQGLKRSRDPDQDQDDDSGEAGKADGSGGENQERSSDQIELDDDDFQETRPKPKRS 60

Query:    61 RASEGTAASAQSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGA 120
             R    T    Q+    LIEV+KGNG LI + VK+WVERYE     A  ELL+MLF+ACGA
Sbjct:    61 R----THPPQQN----LIEVVKGNGDLISKAVKIWVERYEDSPSLATTELLSMLFQACGA 112

Query:   121 KYYLQGESLDEIXXXXXXXALVNLARRGEVEDYQSSKRKELKNFKDNLVSFWDNLVVECQ 180
             KY ++ + LDE        +LVNLAR GE+EDYQSS++KELKNFK+NLVSFW+NL++ECQ
Sbjct:   113 KYSIKDDLLDETDVDDVVVSLVNLARAGELEDYQSSRKKELKNFKENLVSFWNNLIIECQ 172

Query:   181 NGPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQ 240
             NGPLFD+VLFDKCMDYIIALSCTPPRVYRQ A+LMGLQLVTSFISVA  LG+QRETTQRQ
Sbjct:   173 NGPLFDRVLFDKCMDYIIALSCTPPRVYRQTATLMGLQLVTSFISVANTLGSQRETTQRQ 232

Query:   241 LNAEKKKRVEGPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQ 300
             LNAE KKR +GPRV+SLNKRLS+TH+ IT LEDMMRKIFTGLFVHRYRDID +IRMSCIQ
Sbjct:   233 LNAESKKRADGPRVDSLNKRLSVTHEQITTLEDMMRKIFTGLFVHRYRDIDNDIRMSCIQ 292

Query:   301 SLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTER 360
             SLG+WILSYPS FLQDLYLKYLGWTLNDK+A VRK+S+LALQ LYE+D+NVPTLGLFT+R
Sbjct:   293 SLGIWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASLLALQKLYEMDENVPTLGLFTQR 352

Query:   361 FSNRMIELADDIDVSVAVCAIGLVKQLLRHQXXXXXXXXXXXXXXXXXXXEIRRAIGELV 420
             FSNRMIE+ADD+D+S AVCAIGLVKQLLRHQ                   EIRRAIGELV
Sbjct:   353 FSNRMIEMADDVDMSAAVCAIGLVKQLLRHQLIPDDDLGPLYDLLIDQPQEIRRAIGELV 412

Query:   421 YDHLIAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVIDDVWEYMKAMK 480
             YDHLIAQKFNSS S L G D+ SSE+H+ RMLQILREFS DPIL +YVIDDVWEYMKAMK
Sbjct:   413 YDHLIAQKFNSSPSSLTGHDDSSSEIHIFRMLQILREFSTDPILCVYVIDDVWEYMKAMK 472

Query:   481 DWKCIISMLLDENPLI-DLNDDDATNLIRLLSASVKKAVGERIVPASDNRKPYYNKAQKE 539
             DWKCIISMLLD+NP      D+D+TNLIRLL  S++KAVGE+I+P++DNRK Y++KAQ+E
Sbjct:   473 DWKCIISMLLDQNPRTGSTTDEDSTNLIRLLFVSIRKAVGEKIIPSTDNRKQYHSKAQRE 532

Query:   540 VFENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQ 599
             +FENN+++IT AMMKNYP+LLRKFMADKAKV SL++I++ MKLELYSLKR E+SF+  ++
Sbjct:   533 IFENNRKDITVAMMKNYPQLLRKFMADKAKVSSLVEIIIFMKLELYSLKRQEQSFKAAVR 592

Query:   600 LVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDSARKNLKDVEDXXXXXXXXXXXXVL 659
             L+ DAFFKHGEKEALRSCVKAI FC++ES+GELQD +R  LKD+ED            V 
Sbjct:   593 LIKDAFFKHGEKEALRSCVKAITFCASESKGELQDFSRGKLKDLEDELLDKITSAIREVK 652

Query:   660 DGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILHTFRNLDNEVVSFXXXXXXXXXA 719
             DG+DEYSLLVNLKRLYELQLSK V +ES+++++ + LH FRNLD EV+ F         A
Sbjct:   653 DGNDEYSLLVNLKRLYELQLSKPVLVESMFDEIALTLHNFRNLDEEVICFLLLNMHMYLA 712

Query:   720 WSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILA 779
             W LHSIIN E +SEASL+SL+ KR+TLFEEL YFLN    +EE  + GNQL+ R+C ILA
Sbjct:   713 WYLHSIINCEAISEASLSSLISKRDTLFEELSYFLNG---IEESKKYGNQLSNRICAILA 769

Query:   780 EMWCLFRMTNFSSTKLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNR 839
             E WCLFR +N+ S KL RLGYCPD   L+KFWKLC +  N SDET++ED NKEYIEETNR
Sbjct:   770 ETWCLFRKSNYDSGKLERLGYCPDSVFLEKFWKLCAEMFNTSDETDEEDENKEYIEETNR 829

Query:   840 DAVMIAAAKLIAIDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKDEDVSTIFLE 899
             D  +IAA KL+A D VPK+YLGPEIISH  MHG  V  I+K+LIT L+KK++D+S I+LE
Sbjct:   830 DVSVIAACKLVASDVVPKDYLGPEIISHLGMHGPGVTGIIKNLITFLRKKEDDISNIYLE 889

Query:   900 ALKRAYQRHAVEISRSDDKSLTEKSFVECKELSSRLSGTYVGAARNKHRSDILKTVKEGI 959
             +LKRAY R++ E+S   ++S  +K   E +EL+  LSG Y+GAARNK+R +IL  VKEG+
Sbjct:   890 SLKRAYHRYSSELSSGREESRVDKCLEEWRELAGGLSGMYIGAARNKYRLEILSVVKEGV 949

Query:   960 DYAFLDAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNVNMDEDPSGWRPFKSFV 1019
             ++AF DAPKQL FLE A+L F ++L   DI+DI KDVQ R  +VN DEDPSGWRP  +F+
Sbjct:   950 EFAFRDAPKQLLFLEVAILPFATRLSVSDIIDIKKDVQGRIVHVNTDEDPSGWRPCFTFL 1009

Query:  1020 ETLREKYTKNEGIQ 1033
             ETL EK  KNE +Q
Sbjct:  1010 ETLEEKCLKNEDLQ 1023

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005694 "chromosome" evidence=IDA

GO:0051455 "attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation" evidence=IMP

GO:0051754 "meiotic sister chromatid cohesion, centromeric" evidence=IMP

GO:0000003 "reproduction" evidence=RCA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006325 "chromatin organization" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

UNIPROTKB\|F1P9C8 STAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MC39 STAG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6P275 STAG1 "STAG1 protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WVM7 STAG1 "Cohesin subunit SA-1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310744 Stag1 "stromal antigen 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1098658 Stag1 "stromal antigen 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NYY6 STAG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9DGN1 stag1 "Cohesin subunit SA-1" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

UNIPROTKB\|E1B9B0 STAG3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1042
pfam08514		118	pfam08514, STAG, STAG domain	4e-44
COG5537		740	COG5537, IRR1, Cohesin [Cell division and chromoso	2e-25

>gnl\|CDD\|219877 pfam08514, STAG, STAG domain	Back alignment and domain information

 Score =  154 bits (392), Expect = 4e-44
 Identities = 47/117 (40%), Positives = 70/117 (59%), Gaps = 2/117 (1%)

Query: 148 GEVEDYQ-SSKRKELKNFKDNLVSFWDNLVVECQNGPLFDKVLFDKCMDYIIALSCTPPR 206
            +  DY   SK  +LK F++NL  F   LV++CQ   L+D  L D  + ++ ALS +  R
Sbjct: 1   EDSGDYPLVSKGPKLKKFRENLCEFLSTLVIQCQYSLLYDDNLMDNLISWLTALSSSQVR 60

Query: 207 VYRQVASLMGLQLVTSFISVAKMLGAQRETTQRQLNAEKKKRVEGP-RVESLNKRLS 262
            +R  A+L+ L+L+T+  +VA  L   +ETTQ+QL AEKKK  +   RV+SLN +  
Sbjct: 61  PFRHTATLVALKLMTALCNVALELSNSKETTQKQLEAEKKKSRDNRARVDSLNSKRK 117

STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version. Length = 118

>gnl\|CDD\|227824 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1042
KOG2011		1048	consensus Sister chromatid cohesion complex Cohesi	100.0
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	100.0
PF08514		118	STAG: STAG domain ; InterPro: IPR013721 STAG domai	99.96
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	97.05
COG5537		740	IRR1 Cohesin [Cell division and chromosome partiti	96.26
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	96.24
PF12717		178	Cnd1: non-SMC mitotic condensation complex subunit	96.09
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.69
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	95.1
PRK09687		280	putative lyase; Provisional	94.73
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	94.04
PRK13800		897	putative oxidoreductase/HEAT repeat-containing pro	93.89
PRK09687		280	putative lyase; Provisional	93.85
KOG1020		1692	consensus Sister chromatid cohesion protein SCC2/N	93.69
PTZ00429		746	beta-adaptin; Provisional	93.0
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	92.59
KOG0414		1251	consensus Chromosome condensation complex Condensi	92.31
PF12830		187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.17
PF13646		88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	91.91
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	91.11
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	89.71
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	89.54
PF04826		254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	88.43
KOG2025		892	consensus Chromosome condensation complex Condensi	87.02
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	86.61
PF12719		298	Cnd3: Nuclear condensing complex subunits, C-term	85.85
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	85.71
KOG1820		815	consensus Microtubule-associated protein [Cytoskel	85.48
PF12333		102	Ipi1_N: Rix1 complex component involved in 60S rib	83.23
KOG2259		823	consensus Uncharacterized conserved protein [Funct	83.08
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	83.07
COG5218		885	YCG1 Chromosome condensation complex Condensin, su	82.74
PTZ00429		746	beta-adaptin; Provisional	82.46
PLN03200		2102	cellulose synthase-interactive protein; Provisiona	82.0
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	80.66
KOG1240		1431	consensus Protein kinase containing WD40 repeats [	80.19

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=7.9e-173  Score=1552.82  Aligned_cols=919  Identities=30%  Similarity=0.477  Sum_probs=821.9

Q ss_pred             cccchhHHHHHhcCCCCHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHcCCceecCccccCCCChhHHHHHHHHHHhcCCc
Q 001623           71 QSIELSLIEVIKGNGKLIPQVVKLWVERYEKDAKPAIAELLTMLFEACGAKYYLQGESLDEIDVDDVVVALVNLARRGEV  150 (1042)
Q Consensus        71 ~~~~~~L~~~v~~~~~~i~~va~~Wie~Y~~d~~~Al~eLinfil~~~Gc~~~It~~~~~~~d~~~ii~~l~e~~~~~~~  150 (1042)
                      ..+++.||.+|+.++..++++|++|++.|++|++.||++||||||+||||++.||++|++++|+++++..|++.|.++..
T Consensus        77 E~~~~eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~~~e~es  156 (1048)
T KOG2011|consen   77 EFDPNELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTELFDERES  156 (1048)
T ss_pred             ccChHHHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHHHhhhhh
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999999998667


Q ss_pred             cccc-ccccccchhHHHHHHHHHHHHHHhhcc-CCccchHhHHHHHHHhHhcCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 001623          151 EDYQ-SSKRKELKNFKDNLVSFWDNLVVECQN-GPLFDKVLFDKCMDYIIALSCTPPRVYRQVASLMGLQLVTSFISVAK  228 (1042)
Q Consensus       151 ~~y~-~sk~k~~K~Fr~n~~eF~~~Lv~~~~~-~~LyD~~lmd~l~~wL~~LS~S~vR~fRHTATl~aL~l~taLv~va~  228 (1042)
                      +||| .++||.||+||.|||+|+.+||.+|++ ++|||+++|+++++||+|||+|++|+||||||++||++||+||.||.
T Consensus       157 ~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~  236 (1048)
T KOG2011|consen  157 GDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVAL  236 (1048)
T ss_pred             ccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7886 567889999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHcccCC-CccHHHHHHHHHHHHhhHHHHHHHHHhhhcceEeccccCCChhHHHHHHHHHHHHHh
Q 001623          229 MLGAQRETTQRQLNAEKKKRVE-GPRVESLNKRLSMTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWIL  307 (1042)
Q Consensus       229 ~l~~~~~~~qrQleaek~K~~~-~~r~e~l~~~~~e~~~~~~~i~~~i~~iF~~VFvhRyRDv~p~IR~~Ci~eLG~Wi~  307 (1042)
                      +|+.+.+++|||||+|++|.+. +.|+++|..+++++|+++++|++||++||++|||||||||+|+||++||++||.||.
T Consensus       237 ~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~  316 (1048)
T KOG2011|consen  237 NLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIK  316 (1048)
T ss_pred             HHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHH
Confidence            9999999999999999987653 459999999999999999999999999999999999999999999999999999999


Q ss_pred             hCccccccchhhhhhhhhcCCCChhHHHHHHHHHHhhhhcCCCcccHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Q 001623          308 SYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIGLVKQL  387 (1042)
Q Consensus       308 ~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~~Ft~RFk~RlveM~~D~D~~V~v~AI~Ll~~l  387 (1042)
                      +||++|++++||||+||+|||++++||+.||++|++||.++++.++|++||+|||+|||||| |+|.+|+|.|++|+..+
T Consensus       317 ~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa-drd~~~~Vrav~L~~~~  395 (1048)
T KOG2011|consen  317 SYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA-DRDRNVSVRAVGLVLCL  395 (1048)
T ss_pred             hccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 88888888887777777


Q ss_pred             Hh--cCCCCCCChhhHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcCcccCCC-CCCCCchhhHHhHHHHHHHhccCCCch
Q 001623          388 LR--HQLLPDDDLGPLYDLLIDDPPEIRRAIGELVYDHLIAQKFNSSQSGLK-GKDNDSSEVHLGRMLQILREFSADPIL  464 (1042)
Q Consensus       388 ~~--~~~L~~~d~~~V~~Lvfd~~~~Vr~AAg~fv~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~f~~~~~~  464 (1042)
                      ..  .|+|+++||..||.||||.+|++|+|||+|++.++++...+....+++ ......+...+..++.++.++ ..+.|
T Consensus       396 ~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a~~e~~~~~~~~~~~~~~~~l~~lv~~fi~~-~l~~~  474 (1048)
T KOG2011|consen  396 LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVANSERVGAEKSLLKAENRELLPLLVSFFEES-ELHQH  474 (1048)
T ss_pred             HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhccccchhhhccccccccccccchHHHHHHHhhhh-hhhhh
Confidence            66  799999999999999999999999999999999999865433111111 111122233455566666664 34668


Q ss_pred             hhhHHHhhcc-ccccCCChHHHHHHHcCCCC--CCCCCchhhHHHHHHHHHHHHHH-hcCCCCCCCCCCCccchhhhhhh
Q 001623          465 SIYVIDDVWE-YMKAMKDWKCIISMLLDENP--LIDLNDDDATNLIRLLSASVKKA-VGERIVPASDNRKPYYNKAQKEV  540 (1042)
Q Consensus       465 ~~ylVDsLwd-~~~~lkDWe~m~~~LL~d~~--~~~L~~~~e~~LieiL~asVrqa-~g~~~~~~~~~rk~~~~~~~k~~  540 (1042)
                      ++|+||++|+ ....++||+||.++|+....  +..+++.+++.|+|+|++++||+ .|++|+|+.+++|...+.++.+.
T Consensus       475 ~~ylv~~l~ds~~~~lkDw~c~~s~ll~~~~~~~~~l~~~~~s~lie~m~~sirq~ae~e~~v~~~~n~k~~~S~ke~~~  554 (1048)
T KOG2011|consen  475 AAYLVDSLFDSLDFLLKDWACMTSLLLDKLLPQGQELSSADESTLIEIMLNSIRQSAEGEPPVGRHQNSKNNLSAKEDAD  554 (1048)
T ss_pred             HHHHHHHHHHhhHHHhcccHHHHHhhcccccchhhhccchhhHHHHHHHHHHHHHHhcCCCCccccccccccccHHHHHH
Confidence            8999999999 56789999999999998753  34789999999999999999985 59999999988888889999999


Q ss_pred             hhhhHHHHHHHHHHHhHHHHHHHhcCccchhHHHhhhhhcchhhhcccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Q 001623          541 FENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDIVMHMKLELYSLKRDEKSFETILQLVNDAFFKHGEKEALRSCVKA  620 (1042)
Q Consensus       541 ~~~~~~~iT~~li~~LP~LL~Ky~ad~ekv~~LL~ip~~~dLe~Y~~~r~e~~l~~LL~~i~~~~~kHsd~~VL~~~a~a  620 (1042)
                      +++++.++|+++++.+|+|+.||++|.+++++|++||+||+++.|+.+|++++|.++++++..++.+|.+++|+++|+++
T Consensus       555 ~~e~r~~~t~~~~~~lp~Ll~k~~~d~~k~~nl~~i~~~~~l~~y~~~r~~~~l~a~~~~~~~~~~khle~~~l~sc~~~  634 (1048)
T KOG2011|consen  555 LEEDRPDLTERLIENLPQLLSKYSADEEKSANLHLIPTHFSLEEYSLGRQEEHLRAASQQITDIIEKHLESEVLESCDKP  634 (1048)
T ss_pred             HHHhhhhHHHHHHHHhHHHHhhhhhHHHhhhhHHhhhhhhhHHhhhhHhHHHHHHHHHHHHHHHhhhhccHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchh--hHHHHHhhhHhHHHHHHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHh
Q 001623          621 IKFCSAESQG--ELQDSARKNLKDVEDKLIAKLKSAIK-AVLDGDDEYSLLVNLKRLYELQLSKAVPIESLYEDLVMILH  697 (1042)
Q Consensus       621 l~~L~~~~~~--~l~~~a~~~l~~L~d~lv~~l~~~~~-~~~~~~~~~~ll~~L~Rl~~l~~~~~~~~~~l~~~l~~ll~  697 (1042)
                      |+++|.++..  ..+++++.++.++.++..+.....+. ...++++.|+++++|+|++.|++.+++..|++|+.+...++
T Consensus       635 ~~~l~~~els~~~~~di~r~~~~dl~~~~~~~il~~f~~~~~~~~~~~~~l~~lk~~~~~q~~~~~~~~~l~~~l~~~l~  714 (1048)
T KOG2011|consen  635 YEFLCYEELSKITDKDIERSNLYDLFDTKYDKILDIFLLFIRDEDDEYAVLSRLKRLASFQNSIDLLKWDLFKALAESLH  714 (1048)
T ss_pred             HHHHhhHHHhhhHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            9999998443  45788888765555555544333332 23377889999999999999999999999999999999998


Q ss_pred             h--cCCCCHHHHHHHHHHHHHHHhhcccccccccCccHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccchhhhhhhHH
Q 001623          698 T--FRNLDNEVVSFLLLNLYLYLAWSLHSIINAETVSEASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVC  775 (1042)
Q Consensus       698 ~--~~~l~~e~v~~al~~~~~~l~W~l~~l~~~~~~~~~~~~~L~~~r~~f~~~l~~~L~~~~~~~~~~~~~~~~~c~~~  775 (1042)
                      .  .+++|..++..+++++++.+.|.+..+..+..+.++.+..|+++++.++..|..++.-....+  .++++       
T Consensus       715 e~~~~d~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~e~l~~f~~~~~~~~~l~~~~~~~~~~ev--~e~~~-------  785 (1048)
T KOG2011|consen  715 ERINRDPQRCIILFKLQLLGNKLTYDLVKIKNGEVCGAEFLSELRSRSDSMFNLVDEYLEEVNMEV--EEQAV-------  785 (1048)
T ss_pred             hhhccCchhhHHHHHHHHhhhhhhhhhhhhccCCCccHHHHHHHHHHhHHHHHHHHHHHHhhhhHH--HHHHH-------
Confidence            6  467899999999999999999999999667778899999999999999999999997732222  24444       


Q ss_pred             HHHHHHHHHhhcccCCCc--ccccccccCCHHHHHHHHHH-hhhhhccCCCcchhhhhHHHHHH-hhchHHHHHHHHHHh
Q 001623          776 TILAEMWCLFRMTNFSST--KLSRLGYCPDIPVLQKFWKL-CEQQLNISDETEDEDVNKEYIEE-TNRDAVMIAAAKLIA  851 (1042)
Q Consensus       776 ~~~~dl~~lf~~~~~~~~--~l~~L~y~p~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~e~-~~rR~~La~~cKLi~  851 (1042)
                      ...||++++|+.+...++  .+++++|.|+..+++.+.+| ..++|...++..  +++..+||. |+||+++|+|||||+
T Consensus       786 ~~~~~~Lii~~~~~~~~~~~~~~~~v~k~~~~~~~~l~~f~~~~Vfi~~~~~~--~~~~~~Ie~~~~~r~~~a~~~~li~  863 (1048)
T KOG2011|consen  786 RLGCDRLIIFKVQDMEGKIDGLEPLVFKPDKALVGQLRNFLLDLVFILFTSEN--TNECLKIEQLHKKRKLLASLAKLIL  863 (1048)
T ss_pred             HHHhhHHHHhhhhhcccchhccccceechHHHHHHhhhhHHHHHhhhhhcccc--hHHHHHHHHHHHhhhHHhHHHHHHH
Confidence            445667778888887643  58999999999999999774 457776665433  234457887 589999999999999


Q ss_pred             cCCcccccccccccccccccCCCHHHHHHHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHhccCCCCccchhhhHHHHH
Q 001623          852 IDSVPKEYLGPEIISHFVMHGTNVAEIVKHLITVLKKKD-EDVSTIFLEALKRAYQRHAVEISRSDDKSLTEKSFVECKE  930 (1042)
Q Consensus       852 ~~vv~~~~~aa~i~~~Y~k~y~d~gDIiK~tl~~~r~~~-~~~~~~~~~~L~~ly~~~~~~~~~~~~~~~~s~~f~~~ke  930 (1042)
                      ||++||+ +|+++||||++||++||||+|+|++++|+++ .+|++++.++|+++|.                   .++|+
T Consensus       864 ~~~~~~~-~a~~~fK~~~~~~~~~gd~~~~~l~k~r~i~~~~~~~~l~~~l~~~~~-------------------~~~~~  923 (1048)
T KOG2011|consen  864 ENKLPMM-EASDIFKMYEKFYNDYGDIIKETLSKAREIDKSEFAKTVDLSLETLFD-------------------TEIKE  923 (1048)
T ss_pred             cccccHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hHHHH
Confidence            9999995 9999999999999999999999999999997 9999999999999996                   68999


Q ss_pred             HHhHhhccccCchhhcchHHHHHHHHhhcccccc-------ccCcccchHHhhhhhhccCCCcccHHHHHHHHHhhccCC
Q 001623          931 LSSRLSGTYVGAARNKHRSDILKTVKEGIDYAFL-------DAPKQLSFLECAVLHFVSKLPTPDILDILKDVQIRTDNV 1003 (1042)
Q Consensus       931 LArRfa~tf~G~d~~k~R~ai~~lHk~GI~fA~~-------~~P~nL~FLei~l~eFs~kLl~qDk~~v~~yl~~~~~~~ 1003 (1042)
                      ||+|||++| |+|++|+|+||++|||+||.|||.       .+|||+.|||| ++|||+|  +|||++|++||+|+.+++
T Consensus       924 la~r~~~~~-~~~~~~~r~ai~~~~k~~~~~~~~~~~~~~~~~~p~~~flei-l~e~s~k--~Qdkk~~~~~~~k~~~~~  999 (1048)
T KOG2011|consen  924 LAKRLALTF-GLDQLKNRFAIAVLHKKGILFALFKKDDDPSMEPPNLAFLEI-LSEFSNK--TQDKKAVLSYLEKIETDH  999 (1048)
T ss_pred             HHHHHHhhc-CHHHHhhHHHHHHHHhhcccceeecCCCCccCCCCCchHHHH-HHHhcch--hhhhhhHhhHHHhhcccc
Confidence            999999999 999999999999999999999996       26999999999 6999999  999999999999999999


Q ss_pred             CCCCCCCCcccHHHHHHHHHhhhh
Q 001623         1004 NMDEDPSGWRPFKSFVETLREKYT 1027 (1042)
Q Consensus      1004 ~~~~~~~~W~Pl~~yr~sL~~~~~ 1027 (1042)
                      +|.++ +.|.|+.+|++||.+...
T Consensus      1000 ~~~~~-~~~~p~~~~~~~l~~~~~ 1022 (1048)
T KOG2011|consen 1000 MPTSR-DPWIPLTSYLNSLEEGSQ 1022 (1048)
T ss_pred             CCCCC-CCCcccccccccccccCC
Confidence            99877 999999999999998843

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus	Back alignment and domain information

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function	Back alignment and domain information

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]	Back alignment and domain information

>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]	Back alignment and domain information

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]	Back alignment and domain information

>PTZ00429 beta-adaptin; Provisional	Back alignment and domain information

>PLN03200 cellulose synthase-interactive protein; Provisional	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1042
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	8e-05
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 91.1 bits (225), Expect = 1e-18
 Identities = 109/715 (15%), Positives = 207/715 (28%), Gaps = 239/715 (33%)

Query: 270 DLEDMMRKIFTGLFVHRYRDI--DPNIRMSCIQSLGVWIL------SYPSFFLQDLYLKY 321
           D++DM + I +         I    +  +S    L  W L          F  + L + Y
Sbjct: 37  DVQDMPKSILSK---EEIDHIIMSKD-AVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINY 91

Query: 322 LGWTLNDKSASVRKSSVLALQNLYEVD----DNVPTLGLFTERFSNR----------MIE 367
             + ++      R+ S++    + + D    DN      F +   +R          ++E
Sbjct: 92  -KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV----FAKYNVSRLQPYLKLRQALLE 146

Query: 368 LADDIDVSV-------------AVCAIGLVKQL---------LRHQLLPDDDLGPLYDLL 405
           L    +V +              VC    V+           L++   P+  L  L  LL
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206

Query: 406 ID-DPPEIRRAIGELVYDHL--IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADP 462
              DP    R+      DH   I  + +S Q+ L             R L   + +    
Sbjct: 207 YQIDPNWTSRS------DHSSNIKLRIHSIQAEL-------------RRLLKSKPYEN-- 245

Query: 463 ILSIYVIDDVW--EYMKAMKDWKCIISMLLDENPLIDLNDDDATNLIRLLSASVKKAVGE 520
              + V+ +V   +   A  +  C I        L+       T+ +         A   
Sbjct: 246 --CLLVLLNVQNAKAWNAF-NLSCKI--------LLTTRFKQVTDFL--------SAATT 286

Query: 521 RIVPASDNRKPYYNKAQKEVF----ENNKREITRAMMKNYPRLLRKFMADKAKVPSLIDI 576
             +    +         K +     +   +++ R ++   PR L           S+I  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----------SIIA- 334

Query: 577 VMHMKLELYSLKRDEKS-FETILQLVNDAFFKHGEKEALRSCVKAIKFCSAESQGELQDS 635
                       RD  + ++    +  D          + S +  ++   AE +      
Sbjct: 335 ---------ESIRDGLATWDNWKHVNCDKL-----TTIIESSLNVLE--PAEYRKMFDRL 378

Query: 636 A--RKNLKDVEDKLIAKL-----KSAIKAVLDGDDEYSLLV-----NLKRLYELQLSKAV 683
           +    +   +   L++ +     KS +  V++   +YSL+      +   +  + L   V
Sbjct: 379 SVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 684 PIESLYEDLVMILH--------TFRNLDNEVVSFLLLNLYLY--LAWSLHSIINAETVSE 733
            +E+ Y      LH          +  D++ +    L+ Y Y  +   L +I + E    
Sbjct: 438 KLENEYA-----LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE---- 488

Query: 734 ASLASLLLKRNTLFEELEYFLNSPSEVEEGSRVGNQLACRVCTILAEMWCLFRMTNFSST 793
                    R TLF  +  FL+                             FR   F   
Sbjct: 489 ---------RMTLFRMV--FLD-----------------------------FR---FLEQ 505

Query: 794 KLSRLGYCPDIPVLQKFWKLCEQQLNISDETEDEDVNKEYIEETNRDAVMIAAAKLIAID 853
           K+                       +I +  +     K YI +                D
Sbjct: 506 KIRHDST------------AWNASGSILNTLQQLKFYKPYICDN---------------D 538

Query: 854 SVPKEYLGPEIISHFVM-HGTNVAEIVKHLITVLKKKDEDVSTIFLEALKRAYQR 907
              +  +    I  F+     N+    K+   +      +   IF EA K+  QR
Sbjct: 539 PKYERLV--NAILDFLPKIEENLI-CSKYTDLLRIALMAEDEAIFEEAHKQV-QR 589

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1042
d1u6gc_		1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 0.001
 Identities = 46/249 (18%), Positives = 90/249 (36%), Gaps = 45/249 (18%)

Query: 263  MTHKNITDLEDMMRKIFTGLFVHRYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYL 322
            ++  ++  L+  +  I+  L  H     +   R    + LG   L  P   L  L     
Sbjct: 914  ISSASVVGLKPYVENIWALLLKH-CECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY-- 970

Query: 323  GWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRMIELADDIDVSVAVCAIG 382
               L   S+  R S V A++    + D+   +    +      ++  +D D++V   A+ 
Sbjct: 971  ---LISGSSYARSSVVTAVKFT--ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025

Query: 383  LVKQLLRH----------QLLPDD--------------DLGPLYDLLIDDPPEIRRAIGE 418
                   +           +LP                ++GP +   +DD  +IR+A  E
Sbjct: 1026 TFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGP-FKHTVDDGLDIRKAAFE 1084

Query: 419  LVYDHL--------IAQKFNSSQSGLKGKDNDSSEVHLGRMLQILREFSADPILSIYVID 470
             +Y  L        I +  N  + GLK    D  ++ +   L ++R  +  P   +  +D
Sbjct: 1085 CMYTLLDSCLDRLDIFEFLNHVEDGLK----DHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1140

Query: 471  DVWEYMKAM 479
             + E ++A 
Sbjct: 1141 RLVEPLRAT 1149

PyMOL of d1u6gc_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1042
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.97
d1b3ua_		588	Constant regulatory domain of protein phosphatase	97.52
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.21
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.13
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.14
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	96.06
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.86
d1te4a_		111	MTH187 {Archaeon Methanobacterium thermoautotrophi	95.06
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.56
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	93.14
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	92.61
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.6
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.49
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	90.08
d1lrva_		233	Leucine-rich repeat variant {Azotobacter vinelandi	86.64
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	85.92
d2vgla_		584	Adaptin alpha C subunit N-terminal fragment {Mouse	84.93
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	83.34
d1lsha1		336	Lipovitellin-phosvitin complex, superhelical domai	83.15

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=0.00062  Score=41.94  Aligned_cols=133  Identities=18%  Similarity=0.150  Sum_probs=94.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             02678736999999999998842820003301123563213799854899999999963506897010888999989999
Q 001623          286 RYRDIDPNIRMSCIQSLGVWILSYPSFFLQDLYLKYLGWTLNDKSASVRKSSVLALQNLYEVDDNVPTLGLFTERFSNRM  365 (1042)
Q Consensus       286 RyRDv~p~IR~~Ci~eLG~Wi~~yP~~FL~d~YLKYlGW~L~Dk~~~VR~~~L~aL~~Ly~~~~~~~~L~lFt~RFk~Rl  365 (1042)
                      -..|.+|.+|..+...+|.+....+.....+.-+..+--.++|.+..||..++.+|..+...-..    ..+....-+-+
T Consensus       172 l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l  247 (588)
T d1b3ua_         172 LCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTL  247 (588)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHH
T ss_conf             85169989999999999989987157877999999999974488524678999888776305888----99999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHC-C-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             6640466446999999999999845-9-9998871-347755327997899999999999
Q 001623          366 IELADDIDVSVAVCAIGLVKQLLRH-Q-LLPDDDL-GPLYDLLIDDPPEIRRAIGELVYD  422 (1042)
Q Consensus       366 veM~~D~D~~Vav~AI~Ll~~l~~~-~-~L~~~d~-~~v~~Lifd~~~~Ir~AAg~fv~~  422 (1042)
                      ..++.|.+..||..+++.+..+... + -....++ ..+..++-|.++.||.+|...+..
T Consensus       248 ~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~  307 (588)
T d1b3ua_         248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE  307 (588)
T ss_dssp             HHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             972023568888999985788887766534344416899998721335777999987999

PyMOL of d1b3ua_

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}	Back information, alignment and structure