Citrus Sinensis ID: 001672

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030---
MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKRNKDVSGSKSNKKRKS
cccHHHHHHHHHHHHHHHcccEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccHHHHHHHcccccEEEEccccccHHHHHHHHHHHccccEEEEEccccccHHHHccccccccccccccccccccccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHcccccccccccccccEEccccccccccEEEEEEEccccEEEEEccccccccccccEEEEEccccccHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccHHHHHHHHHcccccccccccccccccccccEEEEccccHHccccccHHHHHHHHHHHHHccccccHHHHHHHHcccccEEEEEEccccccccccccEEEEEEEEccccccHHHHHHHHccccccccccHHHHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHccccccEEEEcccccHHHHHHHHHccccEEEEEccccccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccccccc
cccHccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccccccccEEEEEcHHcccccHHHHHHHHHHHHHHccccccccccccEEEEEcccEEEEEEccHHHHHcccccEEEEHcHHHccHHHHHHHHHHHccccHEEEEcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccEEEEEccccEcEcccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHccccHcccEEEEEccccccccEEEEEEEEccccEEEEEEcccHHHHHcccEEEEEHHHHHccHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccEEcccccHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHccccccEEEEEEccccccccccccEEEEEEEEEcccccHHHHHHHHHccccccccccHHHHHHHccccHHHcccccEEEEEEccccHcccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccHcccccccccccHHHccccccccHccEEEEcccccHHHHHHHHHccccEEEEEEcccccccccEEEEEEEcccccHccccccccHHHHHHHHHHHHHHHHHHccccHccccHHHHHHHHccHHcccccccccccccccHHHHHHHccHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccHEEEcccHHHHHHHHHHHccccccccEEEEEcccccccccccccHHHccccccccccccccccccccc
MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSkavvksrptvlwcykdklelssHKKKRQKQIKKLMQrglldpekvdpfqlfletgglthclykdserilgnTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHerfrteshsEAAGRFNERFLLSLASCRacvvmddelnvlpisshirsitavpvkedseglSEAERDLKDLKEqlcddfpvgplikkcstlDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAgysnifvtapspenlKTLFEFVCKGfnaieykehidydivrssnpdlrkpivrINIYRQHRQTiqymephehekLAQVELLVIDeaaaiplpvvrSLLGPYLVFLSStvngyegtgrSLSLKLLHQLEQqshmpakgvegsahgclfkkielsesiryapgdpieswLNGLlcldvmnsiphinrlpppsecdlyyvnrDTLFSYHKESELFLQRMMALYVSshyknspndlqlmadapAHHLFVLlgpvdesknqlpdILCVIQVCLEGQISRRSVLKsfseghqpsgdqipwkfSEQFrdavfpslsgaRIVRiathpsamrlgygSTAVELLTRYYEgqlttfseidvedtvetpeVRVTEAAKKVSLLEenikpktnlpplLVHLRERQPEKLNYIGVSFGLTLDLFRFWrkhkfapfyvsqnanavtgehtcmvlkplhsedievnesdewgffgpfyrDFKQRFFWLLVQHKLQRMDYKLLMSVldpkinfkeldprqdnsDKFLKSLtgvfsandilRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSeeiktapprlkegafephnisldedlnDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQsgggkiaaggvisvksskskidkpakhkeshqsgkkrnkdvsgsksnkkrks
MRKKVDERIRTLiengvkqrhrsMFVIIGDKSRDQIVNLHYMqskavvksrptVLWCYKdklelsshkkkrqKQIKKLmqrglldpekVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLpisshirsitavpvkedsegLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEykehidydivrssnpdlrkpivrINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRiathpsamrlgYGSTAVELLTRYYEGQlttfseidvedtvetpevrVTEAAKkvslleenikpktnlpplLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSltgvfsandiLRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISseeiktapprlkEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSgggkiaaggvisvksskskidkpakhkeshqsgkkrnkdvsgsksnkkrks
MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHkkkrqkqikkLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVlllrslssltrlCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSaalglaiagaiaagYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGvisvksskskidkPAKHKESHQSGKKRNKDVSGSKSNKKRKS
**********TLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLE******************GLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAV********************EQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQ*************GSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVL*************IPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIK*KTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKEL********KFLKSLTGVFSANDILRLKDYTNGLIEHYAI********HLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEIS*********************************************LNPELLQQYAIVDKNAD**********************************************************
**KKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLEL*******************LDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAV******************LKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQ***************AHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLK****GHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKK**LLE*NIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEI***************************************************LQQYAIVDKNADL*********************************************************
MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLEL************KLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAV***********AERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVK*************************************
*RKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKE**EGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQS***********HGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLT***************************LEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKIN**********SDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGG*************************************************
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MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPxxxxxxxxxxxxxxxxxxxxxLCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKRNKDVSGSKSNKKRKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1033 2.2.26 [Sep-21-2011]
Q9XIK41028 UPF0202 protein At1g10490 yes no 0.993 0.998 0.722 0.0
Q9M2Q41028 UPF0202 protein At3g57940 no no 0.939 0.944 0.730 0.0
Q9H0A01025 N-acetyltransferase 10 OS yes no 0.969 0.976 0.499 0.0
Q8K2241024 N-acetyltransferase 10 OS yes no 0.978 0.987 0.500 0.0
Q55EJ31057 N-acetyltransferase 10 ho yes no 0.941 0.920 0.493 0.0
P539141056 UPF0202 protein KRE33 OS= yes no 0.962 0.941 0.482 0.0
P871151033 UPF0202 protein C20G8.09c yes no 0.967 0.967 0.485 0.0
O017571043 UPF0202 protein F55A12.8 yes no 0.961 0.952 0.450 0.0
Q9W3C11008 Polycomb protein l(1)G002 yes no 0.939 0.963 0.450 0.0
P54008373 UPF0202 protein (Fragment N/A no 0.315 0.873 0.513 5e-90
>sp|Q9XIK4|U202A_ARATH UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2 Back     alignment and function desciption
 Score = 1482 bits (3836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 748/1035 (72%), Positives = 872/1035 (84%), Gaps = 9/1035 (0%)

Query: 1    MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKD 60
            MRKKVDERIRTLIENGVK RHRSMFVIIGDK+RDQIVNLH++ SK+VVKS P+VLWCYK+
Sbjct: 1    MRKKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKN 60

Query: 61   KLELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMC 120
            +L++SSH KKR KQ+KK+ +RG LDPEK+D F LFL+   +THCLYKDSERILGNTFG+C
Sbjct: 61   RLDISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGIC 120

Query: 121  VLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAG 180
            +LQDFEALTPNLLARTIETVEGGGL+VLLL+SL+SLT LCTMVMDVH+RFRTESHSEA+G
Sbjct: 121  ILQDFEALTPNLLARTIETVEGGGLVVLLLQSLASLTSLCTMVMDVHDRFRTESHSEASG 180

Query: 181  RFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQ 240
            RFNERFLLSLASC+ACVVMDDELN+LP+SSHI+SIT VP KEDSE LSEAERDLK LK+ 
Sbjct: 181  RFNERFLLSLASCKACVVMDDELNLLPLSSHIKSITKVPTKEDSEALSEAERDLKSLKDA 240

Query: 241  LCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300
            L DDFPVGPLI KC TLDQGKAV+TF DAILDKTLRS VAL+A+RGRGKSAALGLA+AGA
Sbjct: 241  LNDDFPVGPLINKCCTLDQGKAVVTFFDAILDKTLRSIVALIASRGRGKSAALGLAVAGA 300

Query: 301  IAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIY 360
            +AAGYSNI+VTAPSP+NLKT+FEFVCKGF+A+EYKEH++YD+VRS NP+  K IVRINI+
Sbjct: 301  VAAGYSNIYVTAPSPDNLKTVFEFVCKGFDALEYKEHLEYDVVRSVNPEFNKAIVRINIF 360

Query: 361  RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGR 420
            +QHRQTIQY++PHEHEKL+QVELLVIDEAAAIPLPVV+SLLGPYLVFLSSTV+GYEGTGR
Sbjct: 361  KQHRQTIQYIQPHEHEKLSQVELLVIDEAAAIPLPVVKSLLGPYLVFLSSTVSGYEGTGR 420

Query: 421  SLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVM 480
            SLSLKLL QLE+QS  P  GVEGS  GCLFKKIELSESIRYA GDPIESWLNGLLCLDV 
Sbjct: 421  SLSLKLLQQLEEQSRAPVTGVEGSLSGCLFKKIELSESIRYASGDPIESWLNGLLCLDVA 480

Query: 481  NSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMAD 540
            N +P+    P PS+CDLYYVNRDTLFSYHK+SELFLQRMMAL VSSHYKNSPNDLQL++D
Sbjct: 481  NCLPNPACHPLPSQCDLYYVNRDTLFSYHKDSELFLQRMMALCVSSHYKNSPNDLQLLSD 540

Query: 541  APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFS 600
            APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISR+S  KS  EGH P GDQIPWKF 
Sbjct: 541  APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRKSAEKSLREGHSPHGDQIPWKFC 600

Query: 601  EQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVET 660
            EQFRD VFP LSGARIVRIA HP+AM++GYGS AVELLTRY+EGQL + SE D E  VE 
Sbjct: 601  EQFRDVVFPKLSGARIVRIAVHPNAMKMGYGSAAVELLTRYFEGQLASISEGDDELEVEP 660

Query: 661  PEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKH 720
              VRVTEAA KVSLLEE IKP+ NLPPLLV LR+R+PE+L+YIGVSFGLTLDLFRFWRKH
Sbjct: 661  SPVRVTEAAAKVSLLEEQIKPRANLPPLLVPLRDRRPERLHYIGVSFGLTLDLFRFWRKH 720

Query: 721  KFAPFYVSQNANAVTGEHTCMVLKP--LHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLV 778
            KFAPFY+SQ  +AVTGEHTCM+LKP  L +++ EV+ESDE GFF PFY+DF+ RF  LL 
Sbjct: 721  KFAPFYISQIPSAVTGEHTCMLLKPLTLSNDEFEVDESDELGFFAPFYKDFRIRFSKLL- 779

Query: 779  QHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIE 838
              K ++MDYKL MSVL+PKINF E+D   ++ D FLK L GV S  D+ R + YT  L++
Sbjct: 780  SDKFKKMDYKLAMSVLNPKINFPEVDLTGNSPDGFLKKLDGVLSPYDMERFRAYTANLVD 839

Query: 839  HYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLF 898
               + D+   LAH YFQEKLPV+LSYVQA+VLL +G+   D S I+ QM+LE  +I+ L 
Sbjct: 840  FNLVYDICKTLAHHYFQEKLPVSLSYVQASVLLCLGLQESDFSSIERQMQLERGQIYSLL 899

Query: 899  RKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGL 958
             KV  KL  YL  I+++E+++  PRLK+   EPH +S+DEDL +GA++ EE M+ ++E L
Sbjct: 900  LKVGKKLYKYLNGIATKELESTLPRLKDRVLEPHKVSVDEDLREGAKEVEEQMRARIEEL 959

Query: 959  LNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKR 1018
            L+PELL Q+AI DK A+   ALQ    KI++ G+IS++S+K+  +K  K     +S KKR
Sbjct: 960  LDPELLDQFAIGDKEAE---ALQK--SKISSSGLISIESTKTD-NKKEKPSGFDKSAKKR 1013

Query: 1019 NKDVSGSKSNKKRKS 1033
              D   S SNKKR++
Sbjct: 1014 GNDKHSSTSNKKRRA 1028

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M2Q4|U202B_ARATH UPF0202 protein At3g57940 OS=Arabidopsis thaliana GN=At3g57940 PE=2 SV=2 Back     alignment and function description
>sp|Q9H0A0|NAT10_HUMAN N-acetyltransferase 10 OS=Homo sapiens GN=NAT10 PE=1 SV=2 Back     alignment and function description
>sp|Q8K224|NAT10_MOUSE N-acetyltransferase 10 OS=Mus musculus GN=Nat10 PE=2 SV=1 Back     alignment and function description
>sp|Q55EJ3|NAT10_DICDI N-acetyltransferase 10 homolog OS=Dictyostelium discoideum GN=nat10 PE=3 SV=1 Back     alignment and function description
>sp|P53914|KRE33_YEAST UPF0202 protein KRE33 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRE33 PE=1 SV=1 Back     alignment and function description
>sp|P87115|YDK9_SCHPO UPF0202 protein C20G8.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC20G8.09c PE=3 SV=1 Back     alignment and function description
>sp|O01757|YIL8_CAEEL UPF0202 protein F55A12.8 OS=Caenorhabditis elegans GN=F55A12.8 PE=3 SV=1 Back     alignment and function description
>sp|Q9W3C1|U202_DROME Polycomb protein l(1)G0020 OS=Drosophila melanogaster GN=l(1)G0020 PE=1 SV=2 Back     alignment and function description
>sp|P54008|YXX1_ACHAM UPF0202 protein (Fragment) OS=Achlya ambisexualis PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
2254385271032 PREDICTED: UPF0202 protein At1g10490 [Vi 0.987 0.988 0.800 0.0
3565255491026 PREDICTED: UPF0202 protein At1g10490-lik 0.993 1.0 0.757 0.0
4494484261030 PREDICTED: UPF0202 protein At1g10490-lik 0.996 0.999 0.762 0.0
4495158191030 PREDICTED: LOW QUALITY PROTEIN: UPF0202 0.996 0.999 0.761 0.0
3565127661029 PREDICTED: UPF0202 protein At1g10490-lik 0.992 0.996 0.757 0.0
2240963741033 predicted protein [Populus trichocarpa] 0.989 0.989 0.763 0.0
152185521028 uncharacterized protein [Arabidopsis tha 0.993 0.998 0.722 0.0
1107415361028 hypothetical protein [Arabidopsis thalia 0.993 0.998 0.721 0.0
2978171241027 hypothetical protein ARALYDRAFT_486246 [ 0.941 0.947 0.730 0.0
50915411058 T10O24.10 [Arabidopsis thaliana] 0.993 0.969 0.702 0.0
>gi|225438527|ref|XP_002279361.1| PREDICTED: UPF0202 protein At1g10490 [Vitis vinifera] gi|296082521|emb|CBI21526.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1610 bits (4168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1021 (80%), Positives = 915/1021 (89%), Gaps = 1/1021 (0%)

Query: 1    MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKD 60
            MRKKVDERIRTLIENGVK RHRSMFVIIGDKSRDQIVNLHYM SKAV+KSRPTVLWCYKD
Sbjct: 1    MRKKVDERIRTLIENGVKTRHRSMFVIIGDKSRDQIVNLHYMLSKAVIKSRPTVLWCYKD 60

Query: 61   KLELSSHKKKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMC 120
            KLELSSHKKKR KQ+KKLMQRGLLDPEKVDPF LF+E+GGLT+CLYKDSERILGNTFGMC
Sbjct: 61   KLELSSHKKKRAKQVKKLMQRGLLDPEKVDPFSLFVESGGLTYCLYKDSERILGNTFGMC 120

Query: 121  VLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAG 180
            VLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLT L TMVMDVHERFRTESHSEAAG
Sbjct: 121  VLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTSLYTMVMDVHERFRTESHSEAAG 180

Query: 181  RFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQ 240
            RFNERFLLSLASC+ACV+MDDELN+LPISSHIRSITAVPVKEDSEGLSEAERDLK+LKEQ
Sbjct: 181  RFNERFLLSLASCKACVIMDDELNILPISSHIRSITAVPVKEDSEGLSEAERDLKNLKEQ 240

Query: 241  LCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGA 300
            L +DFPVGPLIKKC TLDQGKAVITFLDAILDK LRSTV  LAARGRGKSAALGLA+AGA
Sbjct: 241  LNEDFPVGPLIKKCCTLDQGKAVITFLDAILDKALRSTVVSLAARGRGKSAALGLAVAGA 300

Query: 301  IAAGYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIY 360
            IAAGYSNIFVTAPSP+NLKTLFEF+CKGF+A+EYKEHIDYD+V+S+NP+ +K  VRINIY
Sbjct: 301  IAAGYSNIFVTAPSPDNLKTLFEFICKGFDALEYKEHIDYDVVKSTNPEFKKATVRINIY 360

Query: 361  RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGR 420
            RQHRQTIQY++PHEHEKL+QVELLV+DEAAAIPLPVV+SLLGPYLVFLSSTVNGYEGTGR
Sbjct: 361  RQHRQTIQYIQPHEHEKLSQVELLVVDEAAAIPLPVVKSLLGPYLVFLSSTVNGYEGTGR 420

Query: 421  SLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVM 480
            SLSLKLL QLE+QS MP K VE S  G LFKKIELSESIRYA GDPIESWLN LLCLDV 
Sbjct: 421  SLSLKLLQQLEEQSQMPTKSVENSLSGRLFKKIELSESIRYASGDPIESWLNTLLCLDVA 480

Query: 481  NSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMAD 540
            NSIP+I+RLPPPSECDLYYVNRDTLFSYHK+SELFLQRMMALYV+SHYKNSPNDLQLMAD
Sbjct: 481  NSIPNISRLPPPSECDLYYVNRDTLFSYHKDSELFLQRMMALYVASHYKNSPNDLQLMAD 540

Query: 541  APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFS 600
            APAHHLFVLLGPVDESKN LPDILCVIQVCLEG ISR+S +KS S+G QP GDQIPWKF 
Sbjct: 541  APAHHLFVLLGPVDESKNHLPDILCVIQVCLEGHISRKSAIKSLSDGRQPFGDQIPWKFC 600

Query: 601  EQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVET 660
            EQF+D VFP+LSGARIVRIATHPSAMRLGYGS AVELLTRY+EGQLT  SEIDVE+TVET
Sbjct: 601  EQFQDTVFPTLSGARIVRIATHPSAMRLGYGSAAVELLTRYFEGQLTPISEIDVENTVET 660

Query: 661  PEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKH 720
            P VRVTEAA+KVSLLEENIKP+T+LP LLVHL ERQPEKL+YIGVSFGLTLDLFRFWR+H
Sbjct: 661  PHVRVTEAAEKVSLLEENIKPRTDLPHLLVHLHERQPEKLHYIGVSFGLTLDLFRFWRRH 720

Query: 721  KFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQH 780
            KFAPFY+ Q  + VTGEHTCMVLKPL++++IEV+ SD+WGFFGPFY+DFK+RF  LL   
Sbjct: 721  KFAPFYIGQIQSTVTGEHTCMVLKPLNNDEIEVSGSDQWGFFGPFYQDFKRRFARLL-GA 779

Query: 781  KLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHY 840
              + M+YKL MS+LDPKINF++++P    S+ FL SL G+FS +D+ RL+ YTN L + +
Sbjct: 780  SFRTMEYKLAMSILDPKINFQDVEPTMPPSNGFLTSLNGIFSPHDMKRLEAYTNNLADFH 839

Query: 841  AILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLFRK 900
             ILDLVP L H Y+QEKLPVTLSY QA+VLL IG+  Q+IS I+ ++KLE  +I  LF K
Sbjct: 840  MILDLVPILVHQYYQEKLPVTLSYAQASVLLCIGLQNQNISYIEGEIKLERQQILSLFIK 899

Query: 901  VMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGLLN 960
             M KL  YLY I+S+EI++  PRL+E   EPH IS+DEDLND A+Q E+GMK K E LL+
Sbjct: 900  SMKKLHKYLYGIASKEIESTLPRLREIVMEPHTISVDEDLNDAAKQVEDGMKAKTESLLD 959

Query: 961  PELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKRNK 1020
            P+ LQQYAI D+ AD EKALQ+GGGK+ + G+ISVKSS++K++K  K ++SH+SG+KR+K
Sbjct: 960  PDFLQQYAIADREADFEKALQNGGGKLPSSGLISVKSSRTKMEKHGKQEKSHKSGEKRSK 1019

Query: 1021 D 1021
            D
Sbjct: 1020 D 1020

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356525549|ref|XP_003531387.1| PREDICTED: UPF0202 protein At1g10490-like [Glycine max] Back     alignment and taxonomy information
>gi|449448426|ref|XP_004141967.1| PREDICTED: UPF0202 protein At1g10490-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515819|ref|XP_004164945.1| PREDICTED: LOW QUALITY PROTEIN: UPF0202 protein At1g10490-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356512766|ref|XP_003525087.1| PREDICTED: UPF0202 protein At1g10490-like [Glycine max] Back     alignment and taxonomy information
>gi|224096374|ref|XP_002310611.1| predicted protein [Populus trichocarpa] gi|222853514|gb|EEE91061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15218552|ref|NP_172519.1| uncharacterized protein [Arabidopsis thaliana] gi|322510079|sp|Q9XIK4.2|U202A_ARATH RecName: Full=UPF0202 protein At1g10490 gi|332190464|gb|AEE28585.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|110741536|dbj|BAE98717.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817124|ref|XP_002876445.1| hypothetical protein ARALYDRAFT_486246 [Arabidopsis lyrata subsp. lyrata] gi|297322283|gb|EFH52704.1| hypothetical protein ARALYDRAFT_486246 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|5091541|gb|AAD39570.1|AC007067_10 T10O24.10 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
TAIR|locus:21945791028 AT1G10490 [Arabidopsis thalian 0.991 0.996 0.691 0.0
TAIR|locus:20958281028 AT3G57940 "AT3G57940" [Arabido 0.991 0.996 0.680 0.0
UNIPROTKB|E2RBB41025 NAT10 "Uncharacterized protein 0.978 0.986 0.476 3.1e-257
UNIPROTKB|Q9H0A01025 NAT10 "N-acetyltransferase 10" 0.978 0.986 0.473 5e-257
ZFIN|ZDB-GENE-040426-15431025 nat10 "N-acetyltransferase 10" 0.934 0.941 0.492 1e-256
UNIPROTKB|F1MPG71026 NAT10 "Uncharacterized protein 0.978 0.985 0.475 2.8e-256
MGI|MGI:21389391024 Nat10 "N-acetyltransferase 10" 0.936 0.944 0.489 4.1e-255
UNIPROTKB|F1SGS71028 NAT10 "Uncharacterized protein 0.977 0.982 0.471 5.2e-255
RGD|13067171024 Nat10 "N-acetyltransferase 10 0.977 0.986 0.474 1.1e-254
SGD|S0000050761056 KRE33 "Protein required for bi 0.460 0.450 0.526 1.2e-245
TAIR|locus:2194579 AT1G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3641 (1286.8 bits), Expect = 0., P = 0.
 Identities = 717/1037 (69%), Positives = 830/1037 (80%)

Query:     1 MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKD 60
             MRKKVDERIRTLIENGVK RHRSMFVIIGDK+RDQIVNLH++ SK+VVKS P+VLWCYK+
Sbjct:     1 MRKKVDERIRTLIENGVKLRHRSMFVIIGDKARDQIVNLHHILSKSVVKSNPSVLWCYKN 60

Query:    61 KLELSSHXXXXXXXXXXLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMC 120
             +L++SSH          + +RG LDPEK+D F LFL+   +THCLYKDSERILGNTFG+C
Sbjct:    61 RLDISSHNKKRAKQLKKMKERGQLDPEKLDAFSLFLDVVDVTHCLYKDSERILGNTFGIC 120

Query:   121 VLQDFEALTPNLLARTIETVEGGGLIVXXXXXXXXXXXXCTMVMDVHERFRTESHSEAAG 180
             +LQDFEALTPNLLARTIETVEGGGL+V            CTMVMDVH+RFRTESHSEA+G
Sbjct:   121 ILQDFEALTPNLLARTIETVEGGGLVVLLLQSLASLTSLCTMVMDVHDRFRTESHSEASG 180

Query:   181 RFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQ 240
             RFNERFLLSLASC+ACVVMDDELN+LP+SSHI+SIT VP KEDSE LSEAERDLK LK+ 
Sbjct:   181 RFNERFLLSLASCKACVVMDDELNLLPLSSHIKSITKVPTKEDSEALSEAERDLKSLKDA 240

Query:   241 LCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSXXXXXXXXXX 300
             L DDFPVGPLI KC TLDQGKAV+TF DAILDKTLRS VAL+A+RGRGKS          
Sbjct:   241 LNDDFPVGPLINKCCTLDQGKAVVTFFDAILDKTLRSIVALIASRGRGKSAALGLAVAGA 300

Query:   301 XXXXYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIY 360
                 YSNI+VTAPSP+NLKT+FEFVCKGF+A+EYKEH++YD+VRS NP+  K IVRINI+
Sbjct:   301 VAAGYSNIYVTAPSPDNLKTVFEFVCKGFDALEYKEHLEYDVVRSVNPEFNKAIVRINIF 360

Query:   361 RQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPYLVFLSSTVNGYEGTGR 420
             +QHRQTIQY++PHEHEKL+QVELLVIDEAAAIPLPVV+SLLGPYLVFLSSTV+GYEGTGR
Sbjct:   361 KQHRQTIQYIQPHEHEKLSQVELLVIDEAAAIPLPVVKSLLGPYLVFLSSTVSGYEGTGR 420

Query:   421 SLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVM 480
             SLSLKLL QLE+QS  P  GVEGS  GCLFKKIELSESIRYA GDPIESWLNGLLCLDV 
Sbjct:   421 SLSLKLLQQLEEQSRAPVTGVEGSLSGCLFKKIELSESIRYASGDPIESWLNGLLCLDVA 480

Query:   481 NSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMAD 540
             N +P+    P PS+CDLYYVNRDTLFSYHK+SELFLQRMMAL VSSHYKNSPNDLQL++D
Sbjct:   481 NCLPNPACHPLPSQCDLYYVNRDTLFSYHKDSELFLQRMMALCVSSHYKNSPNDLQLLSD 540

Query:   541 APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFS 600
             APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISR+S  KS  EGH P GDQIPWKF 
Sbjct:   541 APAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRKSAEKSLREGHSPHGDQIPWKFC 600

Query:   601 EQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVET 660
             EQFRD VFP LSGARIVRIA HP+AM++GYGS AVELLTRY+EGQL + SE D E  VE 
Sbjct:   601 EQFRDVVFPKLSGARIVRIAVHPNAMKMGYGSAAVELLTRYFEGQLASISEGDDELEVEP 660

Query:   661 PEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKH 720
               VRVTEAA KVSLLEE IKP+ NLPPLLV LR+R+PE+L+YIGVSFGLTLDLFRFWRKH
Sbjct:   661 SPVRVTEAAAKVSLLEEQIKPRANLPPLLVPLRDRRPERLHYIGVSFGLTLDLFRFWRKH 720

Query:   721 KFAPFYVSQNANAVTGEHTCMVLKPL--HSEDIEVNESDEWGFFGPFYRDFKQRFFWLLV 778
             KFAPFY+SQ  +AVTGEHTCM+LKPL   +++ EV+ESDE GFF PFY+DF+ RF  LL 
Sbjct:   721 KFAPFYISQIPSAVTGEHTCMLLKPLTLSNDEFEVDESDELGFFAPFYKDFRIRFSKLL- 779

Query:   779 QHKLQRMDYKLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIE 838
               K ++MDYKL MSVL+PKINF E+D   ++ D FLK L GV S  D+ R + YT  L++
Sbjct:   780 SDKFKKMDYKLAMSVLNPKINFPEVDLTGNSPDGFLKKLDGVLSPYDMERFRAYTANLVD 839

Query:   839 HYAILDLVPRLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKLEADRIFVLF 898
                + D+   LAH YFQEKLPV+LSYVQA+VLL +G+   D S I+ QM+LE  +I+ L 
Sbjct:   840 FNLVYDICKTLAHHYFQEKLPVSLSYVQASVLLCLGLQESDFSSIERQMQLERGQIYSLL 899

Query:   899 RKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEGL 958
              KV  KL  YL  I+++E+++  PRLK+   EPH +S+DEDL +GA++ EE M+ ++E L
Sbjct:   900 LKVGKKLYKYLNGIATKELESTLPRLKDRVLEPHKVSVDEDLREGAKEVEEQMRARIEEL 959

Query:   959 LNPELLQQYAIVDKNADLEKALQSGGGKIAAGGXXXXXXXXXXXXXPAKHKES--HQSGK 1016
             L+PELL Q+AI DK A+   ALQ    KI++ G               K K S   +S K
Sbjct:   960 LDPELLDQFAIGDKEAE---ALQKS--KISSSGLISIESTKTDNK---KEKPSGFDKSAK 1011

Query:  1017 KRNKDVSGSKSNKKRKS 1033
             KR  D   S SNKKR++
Sbjct:  1012 KRGNDKHSSTSNKKRRA 1028
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2095828 AT3G57940 "AT3G57940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBB4 NAT10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H0A0 NAT10 "N-acetyltransferase 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1543 nat10 "N-acetyltransferase 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPG7 NAT10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2138939 Nat10 "N-acetyltransferase 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGS7 NAT10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1306717 Nat10 "N-acetyltransferase 10 (GCN5-related)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
SGD|S000005076 KRE33 "Protein required for biogenesis of the small ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O01757YIL8_CAEELNo assigned EC number0.45070.96120.9520yesno
Q8K224NAT10_MOUSE2, ., 3, ., 1, ., -0.50040.97870.9873yesno
Q9M2Q4U202B_ARATHNo assigned EC number0.73050.93990.9445nono
P53914KRE33_YEASTNo assigned EC number0.48220.96220.9412yesno
Q9XIK4U202A_ARATHNo assigned EC number0.72270.99320.9980yesno
Q9W3C1U202_DROMENo assigned EC number0.45080.93990.9632yesno
Q9H0A0NAT10_HUMAN2, ., 3, ., 1, ., -0.49950.96900.9765yesno
Q55EJ3NAT10_DICDI2, ., 3, ., 1, ., -0.49360.94190.9205yesno
P87115YDK9_SCHPONo assigned EC number0.48560.96700.9670yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037695001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (245 aa)
  ••• • 0.954
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •• • 0.953
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •• • 0.945
GSVIVG00038815001
SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)
   •• • 0.939
GSVIVG00017910001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (481 aa)
  ••• • 0.939
GSVIVG00018070001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)
   •• • 0.935
GSVIVG00018638001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)
   •• • 0.933
GSVIVG00000597001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (926 aa)
   •• • 0.926
GSVIVG00000661001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa)
   •• • 0.925
GSVIVG00038090001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)
   •• • 0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
COG1444758 COG1444, COG1444, Predicted P-loop ATPase fused to 1e-153
pfam13718169 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 1e-80
pfam05127160 pfam05127, Helicase_RecD, Helicase 4e-62
pfam0835192 pfam08351, DUF1726, Domain of unknown function (DU 2e-38
COG1444758 COG1444, COG1444, Predicted P-loop ATPase fused to 2e-23
pfam13725102 pfam13725, tRNA_bind_2, Possible tRNA binding doma 3e-10
>gnl|CDD|224361 COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information 
 Score =  472 bits (1216), Expect = e-153
 Identities = 221/629 (35%), Positives = 296/629 (47%), Gaps = 68/629 (10%)

Query: 20  RHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLM 79
             RS  V++G  +   + NLH    ++  +    VLW   + L   +   K    +K+  
Sbjct: 2   NKRSFVVLVGTAAELALSNLHRRLIQSQGRDLRRVLWLAGEALLGFASALKLDA-LKRDA 60

Query: 80  QRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIET 139
             G   PE  DPF+     G   H  YK+SERILG TF + VL   E L PN LAR + T
Sbjct: 61  LAGDRLPESPDPFE-----GEFEHIDYKESERILGRTFDLLVLDLTEGLDPNALARLVGT 115

Query: 140 VEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVM 199
           V GGGL+VLLL        L T               +   RFN RF+ SL++    + +
Sbjct: 116 VRGGGLLVLLLPPWEEWKTLPTADSRRL---SVPPFPDVTPRFNRRFIRSLSAHPDGIFI 172

Query: 200 DDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVGPLIKKCSTLDQ 259
           DD           + I + PV         A    K+ K+   D      L + C T DQ
Sbjct: 173 DDVDP--------KKIESGPV--------SANEPSKERKKPPLDPVFPRELYELCLTEDQ 216

Query: 260 GKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIA-AGYSNIFVTAPSPENL 318
            +A+      +LD   +  + L A RGRGKSAALG+A+A A   AG   I VTAP+P N+
Sbjct: 217 AEALEILER-LLDAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANV 274

Query: 319 KTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKL 378
           +TLFEF  KG   + YK  +  D +                       I+Y+ P + ++ 
Sbjct: 275 QTLFEFAGKGLEFLGYKRKVAPDALGEIREVSGDGFR-----------IEYVPPDDAQEE 323

Query: 379 AQVELLVIDEAAAIPLPVVRSLLGP-YLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMP 437
           A  +LLV+DEAAAIPLP++  LL     V  S+T++GYEGTGR  SLK L +L +Q    
Sbjct: 324 A--DLLVVDEAAAIPLPLLHKLLRRFPRVLFSTTIHGYEGTGRGFSLKFLARLRKQRDT- 380

Query: 438 AKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDL 497
                         ++EL E IRYAPGDPIE WL   L LD   +      L   S   L
Sbjct: 381 -----------TLHELELEEPIRYAPGDPIEKWLYDALLLDAEPAELEPEDL-RGSLEIL 428

Query: 498 YYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESK 557
               RD LF      E  L+++  L VS+HY+NSPNDL+ + DAP HH+F L  P     
Sbjct: 429 EVDQRDLLF-----DEELLRQVYGLLVSAHYRNSPNDLRRLLDAPHHHIFALRAPE---- 479

Query: 558 NQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIV 617
                 + V QV  EG +S   +   +  G +P G+ IP   ++  RD  F  L G RIV
Sbjct: 480 ---GKPVAVWQVAEEGGLSDELIDI-WLGGRRPRGNLIPDLLAKHHRDPEFAKLVGWRIV 535

Query: 618 RIATHPSAMRLGYGSTAVELLTRYYEGQL 646
           RIA HP   R+G GS  + LL       L
Sbjct: 536 RIAVHPELQRMGIGSRLLALLIEEARKGL 564

Length = 758
>gnl|CDD|222340 pfam13718, GNAT_acetyltr_2, GNAT acetyltransferase 2 Back     alignment and domain information
>gnl|CDD|218449 pfam05127, Helicase_RecD, Helicase Back     alignment and domain information
>gnl|CDD|149420 pfam08351, DUF1726, Domain of unknown function (DUF1726) Back     alignment and domain information
>gnl|CDD|224361 COG1444, COG1444, Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>gnl|CDD|222344 pfam13725, tRNA_bind_2, Possible tRNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1033
KOG20361011 consensus Predicted P-loop ATPase fused to an acet 100.0
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 100.0
PF13718196 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2Z 100.0
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 100.0
PF0835192 DUF1726: Domain of unknown function (DUF1726); Int 99.91
PF13725101 tRNA_bind_2: Possible tRNA binding domain; PDB: 2Z 99.7
PHA03333752 putative ATPase subunit of terminase; Provisional 99.47
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 98.55
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 98.43
PRK10875615 recD exonuclease V subunit alpha; Provisional 98.4
PF13673117 Acetyltransf_10: Acetyltransferase (GNAT) domain; 98.34
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 98.28
PF1350879 Acetyltransf_7: Acetyltransferase (GNAT) domain; P 98.25
TIGR01575131 rimI ribosomal-protein-alanine acetyltransferase. 98.05
smart00487201 DEXDc DEAD-like helicases superfamily. 97.97
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.96
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.89
PRK138261102 Dtr system oriT relaxase; Provisional 97.88
PTZ00330147 acetyltransferase; Provisional 97.81
PHA03368738 DNA packaging terminase subunit 1; Provisional 97.79
COG0456177 RimI Acetyltransferases [General function predicti 97.72
PF0058383 Acetyltransf_1: Acetyltransferase (GNAT) family; I 97.69
PRK10146144 aminoalkylphosphonic acid N-acetyltransferase; Pro 97.65
PRK10314153 putative acyltransferase; Provisional 97.65
TIGR00376637 DNA helicase, putative. The gene product may repre 97.64
PRK09491146 rimI ribosomal-protein-alanine N-acetyltransferase 97.59
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 97.55
PRK03624140 putative acetyltransferase; Provisional 97.51
TIGR03103547 trio_acet_GNAT GNAT-family acetyltransferase TIGR0 97.51
PHA02533534 17 large terminase protein; Provisional 97.44
TIGR03827266 GNAT_ablB putative beta-lysine N-acetyltransferase 97.44
PRK13688156 hypothetical protein; Provisional 97.43
TIGR01890429 N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi 97.37
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 97.36
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 97.3
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 97.28
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 97.25
PHA00673154 acetyltransferase domain containing protein 97.25
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 97.21
PRK10562145 putative acetyltransferase; Provisional 97.18
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 97.17
PRK08939306 primosomal protein DnaI; Reviewed 97.07
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 97.06
PF13527127 Acetyltransf_9: Acetyltransferase (GNAT) domain; P 97.06
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 97.05
TIGR02382191 wecD_rffC TDP-D-fucosamine acetyltransferase. This 97.04
PLN02706150 glucosamine 6-phosphate N-acetyltransferase 97.03
KOG1803649 consensus DNA helicase [Replication, recombination 97.02
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 97.02
cd02169297 Citrate_lyase_ligase Citrate lyase ligase. Citrate 97.01
TIGR00643630 recG ATP-dependent DNA helicase RecG. 96.97
PRK10514145 putative acetyltransferase; Provisional 96.93
PRK05279441 N-acetylglutamate synthase; Validated 96.91
PRK07757152 acetyltransferase; Provisional 96.9
TIGR01686320 FkbH FkbH-like domain. The C-terminal portion of t 96.87
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 96.84
PRK10140162 putative acetyltransferase YhhY; Provisional 96.83
TIGR02406157 ectoine_EctA L-2,4-diaminobutyric acid acetyltrans 96.83
PRK10975194 TDP-fucosamine acetyltransferase; Provisional 96.79
PRK07922169 N-acetylglutamate synthase; Validated 96.77
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 96.76
PF0844586 FR47: FR47-like protein; InterPro: IPR013653 Prote 96.72
PRK07952244 DNA replication protein DnaC; Validated 96.72
PHA02653675 RNA helicase NPH-II; Provisional 96.7
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 96.7
PRK12308614 bifunctional argininosuccinate lyase/N-acetylgluta 96.69
PF04851184 ResIII: Type III restriction enzyme, res subunit; 96.66
PRK09831147 putative acyltransferase; Provisional 96.59
COG4098441 comFA Superfamily II DNA/RNA helicase required for 96.58
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 96.57
PLN02825515 amino-acid N-acetyltransferase 96.52
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 96.45
PHA02558501 uvsW UvsW helicase; Provisional 96.43
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.41
PRK08084235 DNA replication initiation factor; Provisional 96.36
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 96.33
PRK15130186 spermidine N1-acetyltransferase; Provisional 96.32
KOG18051100 consensus DNA replication helicase [Replication, r 96.27
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 96.27
PRK04296190 thymidine kinase; Provisional 96.24
cd0430165 NAT_SF N-Acyltransferase superfamily: Various enzy 96.22
TIGR03448292 mycothiol_MshD mycothiol biosynthesis acetyltransf 96.18
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.18
PRK12377248 putative replication protein; Provisional 96.17
PF03237384 Terminase_6: Terminase-like family; InterPro: IPR0 96.16
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 96.15
TIGR03448292 mycothiol_MshD mycothiol biosynthesis acetyltransf 96.08
PRK106891147 transcription-repair coupling factor; Provisional 96.07
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 96.06
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 96.02
PRK10536262 hypothetical protein; Provisional 95.99
PRK05580679 primosome assembly protein PriA; Validated 95.76
PF13523152 Acetyltransf_8: Acetyltransferase (GNAT) domain; P 95.72
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 95.71
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.71
PRK08181269 transposase; Validated 95.71
COG1484254 DnaC DNA replication protein [DNA replication, rec 95.64
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 95.63
PRK01172674 ski2-like helicase; Provisional 95.49
COG1246153 ArgA N-acetylglutamate synthase and related acetyl 95.44
PTZ00424401 helicase 45; Provisional 95.42
PF1324576 AAA_19: Part of AAA domain 95.28
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.24
TIGR00124332 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP 95.24
PRK01346411 hypothetical protein; Provisional 95.24
PF13420155 Acetyltransf_4: Acetyltransferase (GNAT) domain; P 95.2
TIGR03585156 PseH pseudaminic acid biosynthesis N-acetyl transf 95.15
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 95.14
PRK08903227 DnaA regulatory inactivator Hda; Validated 95.12
PRK08116268 hypothetical protein; Validated 95.1
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 95.1
PRK02362737 ski2-like helicase; Provisional 95.04
PRK10151179 ribosomal-protein-L7/L12-serine acetyltransferase; 95.02
PRK10809194 ribosomal-protein-S5-alanine N-acetyltransferase; 94.97
PRK00254720 ski2-like helicase; Provisional 94.9
PF0454550 Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763 94.89
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 94.8
PRK06921266 hypothetical protein; Provisional 94.69
PRK09401 1176 reverse gyrase; Reviewed 94.68
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 94.47
PTZ00110545 helicase; Provisional 94.46
PRK05642234 DNA replication initiation factor; Validated 94.42
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 94.4
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 94.25
PRK08727233 hypothetical protein; Validated 94.23
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 94.21
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 94.17
smart00382148 AAA ATPases associated with a variety of cellular 94.13
PRK14974336 cell division protein FtsY; Provisional 94.08
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 94.08
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 94.07
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 93.99
KOG3396150 consensus Glucosamine-phosphate N-acetyltransferas 93.94
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 93.78
PF13173128 AAA_14: AAA domain 93.78
PHA02544316 44 clamp loader, small subunit; Provisional 93.73
KOG3139165 consensus N-acetyltransferase [General function pr 93.57
COG4626546 Phage terminase-like protein, large subunit [Gener 93.55
COG2153155 ElaA Predicted acyltransferase [General function p 93.54
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 93.49
TIGR02688449 conserved hypothetical protein TIGR02688. Members 93.43
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 93.37
PF10236309 DAP3: Mitochondrial ribosomal death-associated pro 93.37
PRK06526254 transposase; Provisional 93.36
KOG3138187 consensus Predicted N-acetyltransferase [General f 93.32
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 93.24
PRK06835329 DNA replication protein DnaC; Validated 93.21
PHA03372668 DNA packaging terminase subunit 1; Provisional 93.2
PF13302142 Acetyltransf_3: Acetyltransferase (GNAT) domain; P 93.01
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 93.01
PRK09183259 transposase/IS protein; Provisional 92.72
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 92.72
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 92.69
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 92.63
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 92.55
COG3153171 Predicted acetyltransferase [General function pred 92.51
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 92.35
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 92.31
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 92.23
PF04466387 Terminase_3: Phage terminase large subunit; InterP 92.2
PRK13767876 ATP-dependent helicase; Provisional 92.19
PHA01807153 hypothetical protein 92.18
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 92.17
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 92.13
COG0454156 WecD Histone acetyltransferase HPA2 and related ac 92.1
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 92.09
PRK14701 1638 reverse gyrase; Provisional 92.09
PRK06893229 DNA replication initiation factor; Validated 92.06
COG3393268 Predicted acetyltransferase [General function pred 91.99
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 91.85
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 91.81
COG1247169 Sortase and related acyltransferases [Cell envelop 91.8
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 91.72
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 91.72
cd0617155 Sigma70_r4 Sigma70, region (SR) 4 refers to the mo 91.69
PRK12402337 replication factor C small subunit 2; Reviewed 91.66
PRK00771437 signal recognition particle protein Srp54; Provisi 91.59
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 91.37
PF05673249 DUF815: Protein of unknown function (DUF815); Inte 91.31
PRK12422445 chromosomal replication initiation protein; Provis 91.27
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 91.24
TIGR01211522 ELP3 histone acetyltransferase, ELP3 family. The S 91.16
PRK14087450 dnaA chromosomal replication initiation protein; P 91.15
PRK10865857 protein disaggregation chaperone; Provisional 91.09
PRK13342413 recombination factor protein RarA; Reviewed 91.0
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 90.89
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 90.68
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 90.67
PRK00440319 rfc replication factor C small subunit; Reviewed 90.61
TIGR02959170 SigZ RNA polymerase sigma factor, SigZ family. Thi 90.56
PRK14712 1623 conjugal transfer nickase/helicase TraI; Provision 90.31
PRK13766773 Hef nuclease; Provisional 90.29
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 90.26
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 90.07
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 89.98
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 89.97
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 89.92
PRK09652182 RNA polymerase sigma factor RpoE; Provisional 89.84
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 89.84
cd01124187 KaiC KaiC is a circadian clock protein primarily f 89.78
PRK12529178 RNA polymerase sigma factor; Provisional 89.73
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 89.64
PRK04195482 replication factor C large subunit; Provisional 89.62
PRK00118104 putative DNA-binding protein; Validated 89.62
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 89.61
PRK09047161 RNA polymerase factor sigma-70; Validated 89.53
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 89.52
COG1200677 RecG RecG-like helicase [DNA replication, recombin 89.5
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 89.45
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 89.3
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 89.18
PF13191185 AAA_16: AAA ATPase domain; PDB: 2V1U_A. 89.14
PRK07037163 extracytoplasmic-function sigma-70 factor; Validat 89.08
PRK12536181 RNA polymerase sigma factor; Provisional 88.97
PF02399824 Herpes_ori_bp: Origin of replication binding prote 88.93
PRK11924179 RNA polymerase sigma factor; Provisional 88.87
PRK12512184 RNA polymerase sigma factor; Provisional 88.76
PRK07940394 DNA polymerase III subunit delta'; Validated 88.69
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 88.63
PRK09642160 RNA polymerase sigma factor SigW; Reviewed 88.59
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 88.53
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 88.47
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 88.41
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 88.35
PRK09639166 RNA polymerase sigma factor SigX; Provisional 88.17
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 88.12
PRK12524196 RNA polymerase sigma factor; Provisional 88.12
TIGR02999183 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 f 88.08
PRK00411394 cdc6 cell division control protein 6; Reviewed 87.96
PRK09643192 RNA polymerase sigma factor SigM; Reviewed 87.95
PF1388070 Acetyltransf_13: ESCO1/2 acetyl-transferase 87.9
PRK05602186 RNA polymerase sigma factor; Reviewed 87.82
PF12568128 DUF3749: Acetyltransferase (GNAT) domain; InterPro 87.75
PRK12523172 RNA polymerase sigma factor; Reviewed 87.75
PRK08533230 flagellar accessory protein FlaH; Reviewed 87.72
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 87.68
TIGR02937158 sigma70-ECF RNA polymerase sigma factor, sigma-70 87.62
PRK09637181 RNA polymerase sigma factor SigZ; Provisional 87.59
PRK00149450 dnaA chromosomal replication initiation protein; R 87.54
PRK12519194 RNA polymerase sigma factor; Provisional 87.53
PRK12542185 RNA polymerase sigma factor; Provisional 87.36
TIGR00708173 cobA cob(I)alamin adenosyltransferase. Alternate n 87.32
TIGR02954169 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02 87.27
KOG3216163 consensus Diamine acetyltransferase [Amino acid tr 87.16
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 87.16
TIGR02943188 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02 87.12
COG1670187 RimL Acetyltransferases, including N-acetylases of 87.1
PRK12547164 RNA polymerase sigma factor; Provisional 87.06
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 87.01
PRK12526206 RNA polymerase sigma factor; Provisional 86.88
TIGR02948187 SigW_bacill RNA polymerase sigma-W factor. This si 86.87
CHL00181287 cbbX CbbX; Provisional 86.83
PRK09641187 RNA polymerase sigma factor SigW; Provisional 86.82
PRK09648189 RNA polymerase sigma factor SigD; Reviewed 86.78
COG0507696 RecD ATP-dependent exoDNAse (exonuclease V), alpha 86.72
TIGR00595505 priA primosomal protein N'. All proteins in this f 86.62
COG2607287 Predicted ATPase (AAA+ superfamily) [General funct 86.56
PRK12546188 RNA polymerase sigma factor; Provisional 86.45
PRK06759154 RNA polymerase factor sigma-70; Validated 86.4
PRK09694878 helicase Cas3; Provisional 86.39
PRK12531194 RNA polymerase sigma factor; Provisional 86.28
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 86.19
PRK12539184 RNA polymerase sigma factor; Provisional 86.11
PRK12528161 RNA polymerase sigma factor; Provisional 86.1
PRK12514179 RNA polymerase sigma factor; Provisional 86.01
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 85.93
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 85.84
PRK12530189 RNA polymerase sigma factor; Provisional 85.84
COG2812515 DnaX DNA polymerase III, gamma/tau subunits [DNA r 85.81
PRK04217110 hypothetical protein; Provisional 85.81
PRK12520191 RNA polymerase sigma factor; Provisional 85.75
PRK11923193 algU RNA polymerase sigma factor AlgU; Provisional 85.72
PRK12516187 RNA polymerase sigma factor; Provisional 85.59
PRK09646194 RNA polymerase sigma factor SigK; Reviewed 85.56
PF05729166 NACHT: NACHT domain 85.56
PRK13919186 putative RNA polymerase sigma E protein; Provision 85.5
PRK13709 1747 conjugal transfer nickase/helicase TraI; Provision 85.48
PRK13695174 putative NTPase; Provisional 85.46
KOG4144190 consensus Arylalkylamine N-acetyltransferase [Gene 85.46
PRK12527159 RNA polymerase sigma factor; Reviewed 85.41
PRK12525168 RNA polymerase sigma factor; Provisional 85.4
COG1204766 Superfamily II helicase [General function predicti 85.37
PRK12534187 RNA polymerase sigma factor; Provisional 85.3
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 85.1
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 85.01
PRK09415179 RNA polymerase factor sigma C; Reviewed 85.0
KOG3234173 consensus Acetyltransferase, (GNAT) family [Genera 84.84
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 84.84
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 84.75
PRK12543179 RNA polymerase sigma factor; Provisional 84.66
TIGR00362405 DnaA chromosomal replication initiator protein Dna 84.58
PRK12540182 RNA polymerase sigma factor; Provisional 84.5
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 84.46
TIGR02989159 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodop 84.38
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 84.37
TIGR02983162 SigE-fam_strep RNA polymerase sigma-70 factor, sig 84.34
PRK09645173 RNA polymerase sigma factor SigL; Provisional 84.28
TIGR02985161 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Ba 84.28
PRK12545201 RNA polymerase sigma factor; Provisional 84.28
PRK09200790 preprotein translocase subunit SecA; Reviewed 84.22
PRK12537182 RNA polymerase sigma factor; Provisional 84.21
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 84.2
PRK09644165 RNA polymerase sigma factor SigM; Provisional 84.12
TIGR02012321 tigrfam_recA protein RecA. This model describes or 84.09
TIGR02984189 Sig-70_plancto1 RNA polymerase sigma-70 factor, Pl 84.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 83.97
PRK12522173 RNA polymerase sigma factor; Provisional 83.94
TIGR02950154 SigM_subfam RNA polymerase sigma factor, SigM fami 83.67
PRK11773721 uvrD DNA-dependent helicase II; Provisional 83.56
PRK08301234 sporulation sigma factor SigE; Reviewed 83.49
PRK12904830 preprotein translocase subunit SecA; Reviewed 83.48
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 83.46
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 83.44
TIGR01074664 rep ATP-dependent DNA helicase Rep. Designed to id 83.42
PRK06288268 RNA polymerase sigma factor WhiG; Reviewed 83.41
PRK11054684 helD DNA helicase IV; Provisional 83.4
TIGR02939190 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A s 83.4
PRK09112351 DNA polymerase III subunit delta'; Validated 83.08
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 83.05
TIGR01075715 uvrD DNA helicase II. Designed to identify uvrD me 82.94
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 82.94
smart0042158 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulo 82.84
PHA02535581 P terminase ATPase subunit; Provisional 82.8
PRK06930170 positive control sigma-like factor; Validated 82.77
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 82.7
PHA00729226 NTP-binding motif containing protein 82.52
PRK12532195 RNA polymerase sigma factor; Provisional 82.49
PRK09647203 RNA polymerase sigma factor SigE; Reviewed 82.39
PRK12515189 RNA polymerase sigma factor; Provisional 82.24
PRK12533216 RNA polymerase sigma factor; Provisional 82.2
TIGR02947193 SigH_actino RNA polymerase sigma-70 factor, TIGR02 82.15
TIGR02980227 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G 82.1
PRK12511182 RNA polymerase sigma factor; Provisional 82.06
PRK12544206 RNA polymerase sigma factor; Provisional 82.06
TIGR02952170 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02 81.56
COG4096875 HsdR Type I site-specific restriction-modification 81.53
PRK05803233 sporulation sigma factor SigK; Reviewed 81.44
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 81.38
PRK09649185 RNA polymerase sigma factor SigC; Reviewed 81.34
PRK06986236 fliA flagellar biosynthesis sigma factor; Validate 81.34
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 81.22
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 81.02
PF0844489 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acylt 80.99
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 80.88
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 80.88
cd01393226 recA_like RecA is a bacterial enzyme which has rol 80.83
PRK09651172 RNA polymerase sigma factor FecI; Provisional 80.79
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 80.75
PRK12538233 RNA polymerase sigma factor; Provisional 80.65
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 80.58
cd0617057 LuxR_C_like C-terminal DNA-binding domain of LuxR- 80.55
PRK06851367 hypothetical protein; Provisional 80.29
PRK12541161 RNA polymerase sigma factor; Provisional 80.24
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 80.22
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-321  Score=2678.84  Aligned_cols=1007  Identities=60%  Similarity=0.989  Sum_probs=960.6

Q ss_pred             CchhHHHHHHHHHHHhHhcCeeEEEEEEeCCchhhHHHHHHHHHhhhhcCCCeEEEEeeCCcchhhhHHHHHHHHHHHHh
Q 001672            1 MRKKVDERIRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHKKKRQKQIKKLMQ   80 (1033)
Q Consensus         1 ~~kk~d~ri~~Lien~v~~~~Rs~~vivGd~~~~qv~~lh~~l~~~~~~~~psvLwcyk~~l~~ss~~kkR~~~~kk~~~   80 (1033)
                      ||||+|+|||++|||||+.+|||||||+||+++|||||||+||++++++++|+||||||++++||||||||++++|+.++
T Consensus         1 mrkk~D~RIrtliengv~~~hRS~fvvvGDkardQvp~lh~iLsks~vk~~psVlWcyK~~l~~sshrkkr~kk~kk~~~   80 (1011)
T KOG2036|consen    1 MRKKVDGRIRTLIENGVKLRHRSMFVVVGDKARDQVPNLHHILSKSTVKARPSVLWCYKKDLGFSSHRKKRAKKIKKAIK   80 (1011)
T ss_pred             CcchhhhhHHHHHHccccccceeEEEEEccchhhhhhHHHHHHhhcccCCCCceEEEeeccccchhhhHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCccccccccCCccccchhhhhhhcccccceEEEecCCCCCHHHHHHHhhhhccCcEEEEEeCCCchhhhhh
Q 001672           81 RGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEALTPNLLARTIETVEGGGLIVLLLRSLSSLTRLC  160 (1033)
Q Consensus        81 ~g~~~~~~~d~f~~F~~~~~Ir~~~Yket~kiLG~T~~~lVlqdfe~ltPN~LartieTV~GGGlvvLLl~~~~sl~qly  160 (1033)
                      +|.+|++++|||++|+++++||||||||||+||||||||||||||||+|||+||||||||||||+|||||.++.||+|||
T Consensus        81 ~g~~~~~~~D~f~lFi~~~~I~~cyYkEsekILGnT~gmciLQDFEALTPNLLArTiETVeGGGlVVLLL~sl~SLkqLy  160 (1011)
T KOG2036|consen   81 RGTLDPNSEDPFSLFISSTNIRYCYYKESEKILGNTFGMCILQDFEALTPNLLARTIETVEGGGLVVLLLKSLNSLKQLY  160 (1011)
T ss_pred             ccCCCccccCcHHHHhhccceEEEEeccHHHhhccccceEEeehhhhcChhhhhheeeeeecCcEEEEeHhhhhhHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccccCCcccchhHHHHHHHhhhcCCcEEEEeCCCCeeccCCCccccccCCCCCCccCchhhHhhHHHHHhh
Q 001672          161 TMVMDVHERFRTESHSEAAGRFNERFLLSLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQ  240 (1033)
Q Consensus       161 t~~md~h~r~rt~~~~~v~~rF~eRFi~sL~~~~~~lv~DdelnvlP~s~~~~~i~~~~~~~~~~~~~~~~~~l~~lk~~  240 (1033)
                      ||+||||+|||||+|+++++|||||||+||++|++|+|+||++|+||+|+|.++++++|+. ++++.++.+.++++||++
T Consensus       161 Tm~mDVH~R~rTEaH~ev~~RfNeRfilSLasc~~clv~DDeLnvLplssh~~nv~~~P~~-~~~~~~~~e~~lk~Lkes  239 (1011)
T KOG2036|consen  161 TMSMDVHSRYRTEAHSEVTARFNERFILSLASCKNCLVLDDELNVLPLSSHIKNVEAVPPK-DDENLSPSERELKELKES  239 (1011)
T ss_pred             heeeeHHhhhccccchhhhhhhhHHHHHHHhcCCceEEEcCccccccccccccccccCCCc-ccccCChhhhhhHhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999984 457788999999999999


Q ss_pred             hccCCCCCcccccCCCHHHHHHHHHHHHHHhcccCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhhHHH
Q 001672          241 LCDDFPVGPLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNIFVTAPSPENLKT  320 (1033)
Q Consensus       241 l~~~~p~~~L~~~~~T~DQ~~av~~~~~~i~ek~~r~~vvLTA~RGRGKSAaLGlaiA~~i~~g~~nI~VTAPs~env~t  320 (1033)
                      +.+++|+|+|+++|+|.||++||++|+++|.+|++|.++.|||+|||||||||||++|+|+++||+|||||||||||++|
T Consensus       240 l~~~~P~G~Lv~~~kT~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~GysnIyvtSPspeNlkT  319 (1011)
T KOG2036|consen  240 LSDDQPAGPLVGLCKTLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFGYSNIYVTSPSPENLKT  319 (1011)
T ss_pred             hcCCCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcCcceEEEcCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccccccccccccccCCCCCCcceEEEeeeeccceEEEEeCCccccccCCccEEEEecccCCCHHHHHHh
Q 001672          321 LFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVRSL  400 (1033)
Q Consensus       321 lFef~~kgl~aLgy~e~~dy~i~~s~~p~~~~ai~ri~~~~~h~q~Iqyi~Pd~~~~l~~adLLvIDEAAAIPlplL~~L  400 (1033)
                      ||||+++|||+|+|+||+||+||||+||+|+|||+||||||+||||||||+|.|..+++||||||||||||||+|+|++|
T Consensus       320 lFeFv~kGfDaL~Yqeh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAAIPLplvk~L  399 (1011)
T KOG2036|consen  320 LFEFVFKGFDALEYQEHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAAIPLPLVKKL  399 (1011)
T ss_pred             HHHHHHcchhhhcchhhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhcCCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCeEEEEecccCCCCCCcchhHHHHHHhhhcCCCCCC--CcCCCccCcceeEEEeccccccCCCCcHHHHHHHhccCC
Q 001672          401 LGPYLVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAK--GVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLD  478 (1033)
Q Consensus       401 l~~y~V~lsSTI~GYEGTGRgfsLKf~~~L~~~~~~~~~--~~~~~~~~~~~~ei~L~ePIRya~gDPlE~WL~~lL~LD  478 (1033)
                      +|||+|||||||||||||||+||||++||||+|+..++.  +..+...|+.+++++|+|||||++|||||+|||++||||
T Consensus       400 igPylVfmaSTinGYEGTGRSlSlKLlqqLr~qs~~~~~~~~k~~~~sg~~~kei~l~EsIRY~~gD~IE~WLn~lLcLD  479 (1011)
T KOG2036|consen  400 IGPYLVFMASTINGYEGTGRSLSLKLLQQLRKQSRASNARENKSSSKSGRTLKEISLEESIRYAPGDPIEKWLNRLLCLD  479 (1011)
T ss_pred             hcceeEEEeecccccccccceehHHHHHHHHHhccccccccCcccccccceeccccccccccCCCCCcHHHHHhhhhhhc
Confidence            999999999999999999999999999999999865333  111334689999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccceeeeCcccccccCcCcHHHHHHHHHHHHhcccCCChhHHHHhhcCCCCeEEEEecCCcccCC
Q 001672          479 VMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKN  558 (1033)
Q Consensus       479 a~~~~~~~~~~p~p~~c~l~~Vnrd~Lfs~h~~sE~fLqq~~~LlV~AHYknsPnDLqlLlDaP~h~lfvL~~p~~~~~~  558 (1033)
                      |+...+...+||+|++|+|||||||+|||||++||.|||+||+|||+|||||||||||||+|||+||||||++|++++++
T Consensus       480 as~~~~~~~g~P~Ps~CeLyyVnRdtLFSyh~~sE~FLqr~mal~VSSHYKNSPNDLQllsDAPaH~LFvLl~PVd~~~~  559 (1011)
T KOG2036|consen  480 ASNCLPITSGCPSPSACELYYVNRDTLFSYHKASEAFLQRLMALYVSSHYKNSPNDLQLLSDAPAHHLFVLLGPVDPSQN  559 (1011)
T ss_pred             cccCCcccCCCCChhHceEEEEcchhhhcCCchHHHHHHHHHHHHHHHhccCCchhhhhhccCcccceEEEecCcCcccC
Confidence            99987788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEEEEeeecCCCCHHHHHHHHhcCCCCCCCchhHHHHhhhcCCCCCCCcceEEEEEeeCcccccCChHHHHHHHH
Q 001672          559 QLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELL  638 (1033)
Q Consensus       559 ~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~GdLIP~~ls~q~~d~~f~~l~g~RIVRIAvhPd~q~~GyGsraL~~L  638 (1033)
                      .+|+|+||+|||+||.||++++++++++|+|+.||||||++++||+|.+|+.++|+|||||||||+||+||||+|++++|
T Consensus       560 ~iPdvlcviQv~lEG~isr~si~~sL~~G~~a~GdlIpW~vseQf~D~~F~~l~GaRIVRIAvhP~y~~MGYGsrAvqLL  639 (1011)
T KOG2036|consen  560 AIPDVLCVIQVCLEGRISRQSIENSLRRGKRAAGDLIPWTVSEQFQDEDFPKLSGARIVRIAVHPEYQKMGYGSRAVQLL  639 (1011)
T ss_pred             CCCcceEEEEEeecceecHHHHHHHHhccccccCCccceehhhhhcccchhcccCceEEEEEeccchhccCccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccccccccccccCCcchhhhhHHhhhhcccccccCCCCCCcccccccccCCCCcceEEEecCCCHHHHHHHH
Q 001672          639 TRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWR  718 (1033)
Q Consensus       639 ~~~~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~p~ll~~l~e~~~~~~dylGvSFG~T~~Ll~FW~  718 (1033)
                      .+||+|++++++|+.  .+....+.+++++ ++++|++|.|+||++|||||.+|+|++|+.+||+|||||+|++|++||+
T Consensus       640 ~~y~eG~~~~i~e~~--~~~~~~~k~v~e~-~~vsllee~i~pR~~lppLL~~L~er~perldylGvSfGLT~~L~kFWk  716 (1011)
T KOG2036|consen  640 TDYFEGKFTSISEDV--LAVDHSIKRVEEA-EKVSLLEEQIKPRKDLPPLLLKLSERPPERLDYLGVSFGLTPSLLKFWK  716 (1011)
T ss_pred             HHHHhccCCCccccc--cccCccccccchh-hhhhhhhhhcccccCCCceeeEcccCCCcccceeeecccCCHHHHHHHH
Confidence            999999999998543  2223455666665 7899999999999999999999999999999999999999999999999


Q ss_pred             HCCCeEEEeeecccCCCCcceEEEEccCCccccccccccccchHHHHHHHHHHHHHhhhhhccCCCCCHHHHHHhcCCcc
Q 001672          719 KHKFAPFYVSQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDYKLLMSVLDPKI  798 (1033)
Q Consensus       719 k~gF~pvylrq~~n~~tGEhS~imlk~L~~~~~~~~~~~~~~wl~~~~~dF~~rf~~lL~~~~fr~l~~~lal~lL~~~~  798 (1033)
                      |+||+||||||+.|+.||||||||||+|+.        +...|+..|++||++||+.+| ++.|++|++.+|+++|++..
T Consensus       717 ~~gF~PvylrQt~n~lTGEHtcimLk~L~~--------~e~~wl~~f~qdFr~Rf~~lL-s~~F~~f~~~laLslL~~~~  787 (1011)
T KOG2036|consen  717 KNGFVPVYLRQTSNDLTGEHTCIMLKTLEG--------DESGWLGAFYQDFRRRFLKLL-SYDFKKFTAKLALSLLQNKN  787 (1011)
T ss_pred             hcCceeEEeeccccccccceeEEEEecCCC--------cccchHHHHHHHHHHHHHHHh-hHHHhccCHHHHHHHhcccc
Confidence            999999999999999999999999999997        667899999999999999999 99999999999999999887


Q ss_pred             cCCCCCCCCCCCcccccccCCCCCHHHHHHHHHHhcCccchhhhhchHHHHHHHHhhccCC-CCccHHHHHHHHHHHhcC
Q 001672          799 NFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVPRLAHLYFQEKLP-VTLSYVQAAVLLYIGMLG  877 (1033)
Q Consensus       799 ~~~~~~~~~~~~~l~~~~~~~~ls~~dl~rL~~ya~~~~dy~~i~Dllp~La~lyf~~~~~-~~Ls~~q~~iLla~gLQ~  877 (1033)
                      ...+  ++.....++..+++.+|+|+|++||++|++|++|||+|.|++|.||++||.++++ +.||.+|++||+|+|||+
T Consensus       788 ~~~~--~~~~~~~l~~~~l~~~fsp~Dl~Rl~~ys~n~vD~~li~Dlip~ia~lYF~~klp~~~Ls~vq~siLL~lGlQ~  865 (1011)
T KOG2036|consen  788 NGKE--VSTLSSVLTREELDGYFSPYDLKRLRSYSRNLVDFHLIVDLIPDIAHLYFEGKLPSVKLSVVQSSILLALGLQH  865 (1011)
T ss_pred             cCCC--CcccccccchHHhhcccChhhHHHHHHHhcCCchhhHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHhcccc
Confidence            6652  2333456788899999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchhHHhhCCCCCccCcccccccchhHHHHhhHHHHHHHHHHHHhc
Q 001672          878 QDISCIQEQMKLEADRIFVLFRKVMTKLTDYLYEISSEEIKTAPPRLKEGAFEPHNISLDEDLNDGAEQFEEGMKTKMEG  957 (1033)
Q Consensus       878 ks~~~v~~el~l~~~Q~~a~~~k~v~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  957 (1033)
                      |+++.|++||+||++|++++|.|+++++++||+++.+++||++||++++..++|+..++++||+|+|+|++++||+++++
T Consensus       866 k~vd~i~kel~Lp~~Q~~all~k~~kk~~~~~~~v~~~~ie~~l~~~~~~~~e~~~~sl~~dl~e~ake~~~~~r~~~~~  945 (1011)
T KOG2036|consen  866 KSVDAIEKELNLPSNQLLALLTKAMKKLSKYFDEVEEKAIEETLPREKDRVNEPTPVSLEDDLEEAAKEAEEQMREKQKE  945 (1011)
T ss_pred             CCHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhcCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             cCCccccccccccCChhHHHHHHhcCCCCCCCCceEEEecCccccCCccccccccccccccCCCCCCCCccccc
Q 001672          958 LLNPELLQQYAIVDKNADLEKALQSGGGKIAAGGVISVKSSKSKIDKPAKHKESHQSGKKRNKDVSGSKSNKKR 1031 (1033)
Q Consensus       958 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1031 (1033)
                      +++ ++|++|+|.|++++|.+|+.+.+.+ ...++||+|+++++       ++.+++.+|++.+.+.++|||.|
T Consensus       946 L~~-~~L~~y~i~gd~e~~a~~~~~~~~~-~~~~v~S~Ks~~kr-------~~~~~~~~k~~~~k~~~~~kk~~ 1010 (1011)
T KOG2036|consen  946 LKA-EELDKYAIIGDEEEWAEALEKIGSS-GGIGVVSVKSGKKR-------AAFDKSASKKKANKKPSKKKKFK 1010 (1011)
T ss_pred             HHh-hhhhhhhhcCCHHHHHHHHhhhccc-ccceeEEecccccc-------ccCChhhhhcccccCccchhhcc
Confidence            988 8999999999999999998864322 55789999999877       36677777777777777777665

>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO) Back     alignment and domain information
>PF13725 tRNA_bind_2: Possible tRNA binding domain; PDB: 2ZPA_B Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A Back     alignment and domain information
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PTZ00330 acetyltransferase; Provisional Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>COG0456 RimI Acetyltransferases [General function prediction only] Back     alignment and domain information
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2 Back     alignment and domain information
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional Back     alignment and domain information
>PRK10314 putative acyltransferase; Provisional Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK03624 putative acetyltransferase; Provisional Back     alignment and domain information
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103 Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase Back     alignment and domain information
>PRK13688 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PHA00673 acetyltransferase domain containing protein Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK10562 putative acetyltransferase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase Back     alignment and domain information
>PLN02706 glucosamine 6-phosphate N-acetyltransferase Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>cd02169 Citrate_lyase_ligase Citrate lyase ligase Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK10514 putative acetyltransferase; Provisional Back     alignment and domain information
>PRK05279 N-acetylglutamate synthase; Validated Back     alignment and domain information
>PRK07757 acetyltransferase; Provisional Back     alignment and domain information
>TIGR01686 FkbH FkbH-like domain Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK10140 putative acetyltransferase YhhY; Provisional Back     alignment and domain information
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase Back     alignment and domain information
>PRK10975 TDP-fucosamine acetyltransferase; Provisional Back     alignment and domain information
>PRK07922 N-acetylglutamate synthase; Validated Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT) Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK09831 putative acyltransferase; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PLN02825 amino-acid N-acetyltransferase Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK15130 spermidine N1-acetyltransferase; Provisional Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate Back     alignment and domain information
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging [] Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase Back     alignment and domain information
>PRK01346 hypothetical protein; Provisional Back     alignment and domain information
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A Back     alignment and domain information
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional Back     alignment and domain information
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>KOG3139 consensus N-acetyltransferase [General function prediction only] Back     alignment and domain information
>COG4626 Phage terminase-like protein, large subunit [General function prediction only] Back     alignment and domain information
>COG2153 ElaA Predicted acyltransferase [General function prediction only] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG3153 Predicted acetyltransferase [General function prediction only] Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PHA01807 hypothetical protein Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only] Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>COG3393 Predicted acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs) Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>TIGR02959 SigZ RNA polymerase sigma factor, SigZ family Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09652 RNA polymerase sigma factor RpoE; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK12529 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK00118 putative DNA-binding protein; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09047 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A Back     alignment and domain information
>PRK07037 extracytoplasmic-function sigma-70 factor; Validated Back     alignment and domain information
>PRK12536 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK11924 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12512 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK09642 RNA polymerase sigma factor SigW; Reviewed Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09639 RNA polymerase sigma factor SigX; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12524 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02999 Sig-70_X6 RNA polymerase sigma factor, TIGR02999 family Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK09643 RNA polymerase sigma factor SigM; Reviewed Back     alignment and domain information
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase Back     alignment and domain information
>PRK05602 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length Back     alignment and domain information
>PRK12523 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>PRK08533 flagellar accessory protein FlaH; Reviewed Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family Back     alignment and domain information
>PRK09637 RNA polymerase sigma factor SigZ; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK12519 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12542 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR00708 cobA cob(I)alamin adenosyltransferase Back     alignment and domain information
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family Back     alignment and domain information
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family Back     alignment and domain information
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12547 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>PRK12526 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK09641 RNA polymerase sigma factor SigW; Provisional Back     alignment and domain information
>PRK09648 RNA polymerase sigma factor SigD; Reviewed Back     alignment and domain information
>COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>PRK12546 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK06759 RNA polymerase factor sigma-70; Validated Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK12531 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PRK12539 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12528 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12514 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK12530 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04217 hypothetical protein; Provisional Back     alignment and domain information
>PRK12520 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional Back     alignment and domain information
>PRK12516 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09646 RNA polymerase sigma factor SigK; Reviewed Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK13919 putative RNA polymerase sigma E protein; Provisional Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK12527 RNA polymerase sigma factor; Reviewed Back     alignment and domain information
>PRK12525 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK12534 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PRK09415 RNA polymerase factor sigma C; Reviewed Back     alignment and domain information
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only] Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK12543 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK12540 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>TIGR02983 SigE-fam_strep RNA polymerase sigma-70 factor, sigma-E family Back     alignment and domain information
>PRK09645 RNA polymerase sigma factor SigL; Provisional Back     alignment and domain information
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 Back     alignment and domain information
>PRK12545 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12537 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09644 RNA polymerase sigma factor SigM; Provisional Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>TIGR02984 Sig-70_plancto1 RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1 Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK12522 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02950 SigM_subfam RNA polymerase sigma factor, SigM family Back     alignment and domain information
>PRK11773 uvrD DNA-dependent helicase II; Provisional Back     alignment and domain information
>PRK08301 sporulation sigma factor SigE; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>TIGR01074 rep ATP-dependent DNA helicase Rep Back     alignment and domain information
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR01075 uvrD DNA helicase II Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon Back     alignment and domain information
>PHA02535 P terminase ATPase subunit; Provisional Back     alignment and domain information
>PRK06930 positive control sigma-like factor; Validated Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK12532 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK09647 RNA polymerase sigma factor SigE; Reviewed Back     alignment and domain information
>PRK12515 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12533 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02947 SigH_actino RNA polymerase sigma-70 factor, TIGR02947 family Back     alignment and domain information
>TIGR02980 SigBFG RNA polymerase sigma-70 factor, sigma-B/F/G subfamily Back     alignment and domain information
>PRK12511 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PRK12544 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>PRK05803 sporulation sigma factor SigK; Reviewed Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK09649 RNA polymerase sigma factor SigC; Reviewed Back     alignment and domain information
>PRK06986 fliA flagellar biosynthesis sigma factor; Validated Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2 Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK09651 RNA polymerase sigma factor FecI; Provisional Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PRK12538 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins Back     alignment and domain information
>PRK06851 hypothetical protein; Provisional Back     alignment and domain information
>PRK12541 RNA polymerase sigma factor; Provisional Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
2zpa_A671 Crystal Structure Of Trna(Met) Cytidine Acetyltrans 5e-19
>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase Length = 671 Back     alignment and structure 
Iteration: 1

 Score = 93.6 bits (231), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 141/366 (38%), Gaps = 76/366 (20%)
Query: 279 VALLAARGRGKSXXXXXXXXXXXXXXYSNIFVTAPSPENLKTLFEFVCKGFNAIEYKEHI 338
            A+ AARGRGKS                   VTAP+  +   L +F  + F  I     +
Sbjct: 195 AAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEKFRFIAPDALL 250
Query: 339 DYDIVRSSNPDLRKPIVRINIYRQHRQTIQYMEPHEHEKLAQVELLVIDEAAAIPLPVVR 398
             D                                      Q + LV+DEAAAIP P++ 
Sbjct: 251 ASD-------------------------------------EQADWLVVDEAAAIPAPLLH 273
Query: 399 SLLGPY-LVFLSSTVNGYEGTGRSLSLKLLHQLEQQSHMPAKGVEGSAHGCLFKKIELSE 457
            L+  +    L++TV GYEGTGR   LK   +                      + EL +
Sbjct: 274 QLVSRFPRTLLTTTVQGYEGTGRGFLLKFCARFPH-----------------LHRFELQQ 316
Query: 458 SIRYAPGDPIESWLNGLLCLDVMNSIPHINRLPPPSECDLYYVNRDTLFSYHKESELFLQ 517
            IR+A G P+E  ++  L  D  N   H      P    +      TL+    E+ L   
Sbjct: 317 PIRWAQGCPLEKXVSEALVFDDEN-FTHT-----PQGNIVISAFEQTLWQSDPETPL--- 367
Query: 518 RMMALYVSSHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISR 577
           ++  L   +HY+ SP DL+   DAP  H     G     +N++   L ++    EG +S+
Sbjct: 368 KVYQLLSGAHYRTSPLDLRRXXDAPGQHFLQAAG-----ENEIAGALWLVD---EGGLSQ 419
Query: 578 RSVLKSFSEGHQPSGDQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVEL 637
           +     ++   +P G+ +    +    + +  +L G R+ RIA HP+  R G G   +  
Sbjct: 420 QLSQAVWAGFRRPRGNLVAQSLAAHGNNPLAATLRGRRVSRIAVHPARQREGTGRQLIAG 479
Query: 638 LTRYYE 643
             +Y +
Sbjct: 480 ALQYTQ 485

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 1e-149
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Length = 671 Back     alignment and structure
 Score =  458 bits (1180), Expect = e-149
 Identities = 149/882 (16%), Positives = 253/882 (28%), Gaps = 258/882 (29%)

Query: 9   IRTLIENGVKQRHRSMFVIIGDKSRDQIVNLHYMQSKAVVKSRPTVLWCYKDKLELSSHK 68
           + TL     ++  R + V+ G++                        WC++         
Sbjct: 7   LHTLTAQMKREGIRRLLVLSGEEG-----------------------WCFE--------- 34

Query: 69  KKRQKQIKKLMQRGLLDPEKVDPFQLFLETGGLTHCLYKDSERILGNTFGMCVLQDFEAL 128
                   KL           D   +        HC     + +LG  F   V       
Sbjct: 35  -----HTLKLRDA-----LPGDWLWISPRPDAENHCSPSALQTLLGREFRHAVFDARHGF 84

Query: 129 TPNLLARTIETVEGGGLIVLLLRSLSSLTRLCTMVMDVHERFRTESHSEAAGRFNERFLL 188
                A    T++ G  +VLLL                  R+       A   F +    
Sbjct: 85  DAAAFAALSGTLKAGSWLVLLLPVWEEWE---NQPDADSLRWSDCPDPIATPHFVQHLKR 141

Query: 189 SLASCRACVVMDDELNVLPISSHIRSITAVPVKEDSEGLSEAERDLKDLKEQLCDDFPVG 248
            L +    ++           +   S+     + D    +                    
Sbjct: 142 VLTADNEAILWRQ--------NQPFSLAHFTPRTDWYPATG------------------- 174

Query: 249 PLIKKCSTLDQGKAVITFLDAILDKTLRSTVALLAARGRGKSAALGLAIAGAIAAGYSNI 308
                    +Q + +   +            A+ AARGRGKSA  G  I+          
Sbjct: 175 -----APQPEQQQLLKQLM-----TMPPGVAAVTAARGRGKSALAGQLISR----IAGRA 220

Query: 309 FVTAPSPENLKTLFEFVCKGFNAIEYKEHIDYDIVRSSNPDLRKPIVRINIYRQHRQTIQ 368
            VTAP+  +   L +F  + F  I     +  D                           
Sbjct: 221 IVTAPAKASTDVLAQFAGEKFRFIAPDALLASDE-------------------------- 254

Query: 369 YMEPHEHEKLAQVELLVIDEAAAIPLPVVRSLLGPY-LVFLSSTVNGYEGTGRSLSLKLL 427
                      Q + LV+DEAAAIP P++  L+  +    L++TV GYEGTGR   LK  
Sbjct: 255 -----------QADWLVVDEAAAIPAPLLHQLVSRFPRTLLTTTVQGYEGTGRGFLLKFC 303

Query: 428 HQLEQQSHMPAKGVEGSAHGCLFKKIELSESIRYAPGDPIESWLNGLLCLDVMNSIPHIN 487
            +                      + EL + IR+A G P+E  ++  L  D  N      
Sbjct: 304 ARFPH-----------------LHRFELQQPIRWAQGCPLEKMVSEALVFDDENF----- 341

Query: 488 RLPPPSECDLYYVNRDTLFSYHKESELFLQRMMALYVSSHYKNSPNDLQLMADAPAHHLF 547
               P    +      TL+    E+     ++  L   +HY+ SP DL+ M DAP  H  
Sbjct: 342 -THTPQGNIVISAFEQTLWQSDPET---PLKVYQLLSGAHYRTSPLDLRRMMDAPGQHFL 397

Query: 548 VLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSGDQIPWKFSEQFRDAV 607
              G          +I   + +  EG +S++     ++   +P G+ +    +    + +
Sbjct: 398 QAAGE--------NEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPL 449

Query: 608 FPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTE 667
             +L G R+ RIA H                                      P  +   
Sbjct: 450 AATLRGRRVSRIAVH--------------------------------------PARQ--- 468

Query: 668 AAKKVSLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYV 727
                         +      L+    +  + L+Y+ VSFG T +L+RFW++  F    +
Sbjct: 469 --------------REGTGRQLIAGALQYTQDLDYLSVSFGYTGELWRFWQRCGFVLVRM 514

Query: 728 SQNANAVTGEHTCMVLKPLHSEDIEVNESDEWGFFGPFYRDFKQRFFWLLVQHKLQRMDY 787
             +  A +G +T M L P+     +             +   ++    L  Q   + +  
Sbjct: 515 GNHREASSGCYTAMALLPMSDAGKQ--------LAEREHYRLRRDAQALA-QWNGETLPV 565

Query: 788 KLLMSVLDPKINFKELDPRQDNSDKFLKSLTGVFSANDILRLKDYTNGLIEHYAILDLVP 847
             L   +                           S +D L L  +          L  + 
Sbjct: 566 DPLNDAV--------------------------LSDDDWLELAGFAFAHRPLLTSLGCLL 599

Query: 848 RLAHLYFQEKLPVTLSYVQAAVLLYIGMLGQDISCIQEQMKL 889
           RL               +    L          + +   +KL
Sbjct: 600 RLLQTSE----------LALPALRGRLQKNASDAQLCTTLKL 631
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1033
d1n71a_180 Aminoglycoside 6'-N-acetyltransferase {Enterococcu 98.86
d1tiqa_173 Protease synthase and sporulation negative regulat 98.83
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.69
d2atra1137 Probable acetyltransferase SP0256 {Streptococcus p 98.54
d2jdca1145 Probable acetyltransferase YitI {Bacillus lichenif 98.48
d1ghea_170 Tabtoxin resistance protein {Pseudomonas syringae 98.47
d1z4ra1162 Catalytic domain of GCN5 histone acetyltransferase 98.43
d1qsra_162 Catalytic domain of GCN5 histone acetyltransferase 98.42
d2gana1182 Hypothetical protein PH0736 {Pyrococcus horikoshii 98.41
d1yx0a1151 Hypothetical protein YsnE {Bacillus subtilis [TaxI 98.36
d1y9ka1152 IAA acetyltransferase {Bacillus cereus [TaxId: 139 98.36
d1wwza1157 Hypothetical protein PH1933 {Pyrococcus horikoshii 98.32
d1y9wa1140 Probable acetyltransferase BC2806 {Bacillus cereus 98.29
d2g3aa1137 Probable acetyltransferase Atu2258 {Agrobacterium 98.27
d1z4ea1150 Transcriptional regulator BH1968 {Bacillus halodur 98.27
d2i6ca1160 Putative acetyltransferase PA4794 {Pseudomonas aer 98.26
d1y7ra1133 Hypothetical protein SA2161 {Staphylococcus aureus 98.23
d1s3za_147 Aminoglycoside N-acetyltransferase AAC(6')-IY {Sal 98.2
d2fl4a1146 Probable spermine/spermidine acetyltransferase EF1 98.14
d1q2ya_140 Probable acetyltransferase YjcF {Bacillus subtilis 98.12
d2fe7a1156 Probable N-acetyltransferase PA0478 {Pseudomonas a 98.03
d1vkca_149 Putative acetyltransferase PF0028 {Pyrococcus furi 98.02
d1yr0a1163 Phosphinothricin acetyltransferase {Agrobacterium 98.0
d1vhsa_165 Putative phosphinothricin acetyltransferase YwnH { 97.99
d1yvoa1169 Hypothetical protein PA4866 {Pseudomonas aeruginos 97.99
d2fiaa1157 Probable acetyltransferase EF1919 {Enterococcus fa 97.97
d2fiwa1156 Probable N-acetyltransferase RPA1999 {Rhodopseudom 97.95
d2cy2a1174 Probable acetyltransferase TTHA1209 {Thermus therm 97.94
d1cjwa_166 Serotonin N-acetyltranferase {Sheep (Ovis aries) [ 97.93
d1u6ma_189 Putative acetyltransferase EF0945 {Enterococcus fa 97.92
d1xeba_149 Hypothetical protein PA0115 {Pseudomonas aeruginos 97.85
d1ufha_155 Putative acetyltransferase YycN {Bacillus subtilis 97.77
d1mk4a_157 Hypothetical protein YqiY {Bacillus subtilis [TaxI 97.77
d1ygha_164 Catalytic domain of GCN5 histone acetyltransferase 97.75
d1yvka1152 Hypothetical protein YvbK (BSu33890) {Bacillus sub 97.57
d2ae6a1161 Putative acetyltransferase EF0244 {Enterococcus fa 97.52
d1i12a_157 Glucosamine-phosphate N-acetyltransferase GNA1 {Ba 97.49
d1m4ia_181 Aminoglycoside 2'-N-acetyltransferase {Mycobacteri 97.38
d2beia1167 Diamine acetyltransferase 2 {Human (Homo sapiens) 97.34
d2b5ga1167 Diamine acetyltransferase 1 {Human (Homo sapiens) 97.12
d2ge3a1164 Probable acetyltransferase Atu2290 {Agrobacterium 97.09
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 96.99
d2aj6a1118 Hypothetical protein MW0638 {Staphylococcus aureus 96.99
d2ozga2283 Putative acetyltransferase Ava4977 {Anabaena varia 96.9
d1sqha_297 Hypothetical protein cg14615-pa {Fruit fly (Drosop 96.89
d2hv2a2285 Hypothetical protein EF1021 {Enterococcus faecalis 96.8
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 96.8
d1bo4a_137 Aminoglycoside 3-N-acetyltransferase {Serratia mar 96.65
d1qsma_150 Histone acetyltransferase HPA2 {Baker's yeast (Sac 96.58
d1p0ha_308 Mycothiol synthase MshD {Mycobacterium tuberculosi 96.51
d2i00a2291 Putative acetyltransferase EF2353 {Enterococcus fa 96.4
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 96.27
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 96.25
d2euia1153 Probable acetyltransferase PA4026 {Pseudomonas aer 96.0
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 95.97
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 95.96
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 95.89
d1nsla_180 Probable acetyltransferase YdaF {Bacillus subtilis 95.46
d2fcka1178 Putative ribosomal-protein-serine acetyltransferas 95.04
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 94.95
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 94.81
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 94.53
d1s7ka1174 L7/L12-Ribosomal-protein-serine acetyltransferase 94.49
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 94.05
d1ro5a_197 Autoinducer synthesis protein LasI {Pseudomonas ae 94.01
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 93.97
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 93.27
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 92.39
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 92.25
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 91.89
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 91.78
d1r57a_102 Hypothetical protein SA2309 {Staphylococcus aureus 91.02
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 90.45
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 89.94
d1rp3a271 Sigma factor sigma-28 (FliA) {Aquifex aeolicus [Ta 89.49
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 89.14
d1yk3a1198 Hypothetical protein Rv1347c/MT1389 {Mycobacterium 88.84
d1boba_315 Histone acetyltransferase HAT1 {Baker's yeast (Sac 87.91
d1yrea1183 Hypothetical protein PA3270 {Pseudomonas aeruginos 87.89
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 86.29
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 84.71
d1p0ha_308 Mycothiol synthase MshD {Mycobacterium tuberculosi 84.57
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 82.22
d1or7a168 SigmaE factor (RpoE) {Escherichia coli [TaxId: 562 81.11
>d1n71a_ d.108.1.1 (A:) Aminoglycoside 6'-N-acetyltransferase {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: N-acetyl transferase, NAT
domain: Aminoglycoside 6'-N-acetyltransferase
species: Enterococcus faecium [TaxId: 1352]

Probab=98.86  E-value=2e-07  Score=65.48  Aligned_cols=162  Identities=12%  Similarity=0.124  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHCCCCCCH-HHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf             9999999999834369996-699985329997289984577656787899289999631279998989979834999998
Q 001672          514 LFLQRMMALYVSSHYKNSP-NDLQLMADAPAHHLFVLLGPVDESKNQLPDILCVIQVCLEGQISRRSVLKSFSEGHQPSG  592 (1033)
Q Consensus       514 ~~Lq~i~~LlVsAHYkNsP-nDLqlLlDaP~h~lfvL~~p~~~~~~~lp~il~viqva~EG~is~~~i~~~l~~G~Rp~G  592 (1033)
                      ..+..++.+.....|..++ .++..+++.+. ..++...     +   ..++|.+.+...-                   
T Consensus        15 ~~l~~l~~~~~p~~~~~~~~~~~~~~~~~~~-~~~va~~-----~---~~iig~~~~~~~~-------------------   66 (180)
T d1n71a_          15 DQLSDLLRLTWPEEYGDSSAEEVEEMMNPER-IAVAAVD-----Q---DELVGFIGAIPQY-------------------   66 (180)
T ss_dssp             HHHHHHHHHHCTTTSSSTHHHHHHHHTCTTS-EEEEEEE-----T---TEEEEEEEEEEEE-------------------
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCC-EEEEEEE-----C---CEEEEEEEEEEEC-------------------
T ss_conf             9999999986775447641999999748997-8999999-----9---9687888889726-------------------


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             82008898621278789876208999863865114895899999999997112554443444455577511313677531
Q 001672          593 DQIPWKFSEQFRDAVFPSLSGARIVRIATHPSAMRLGYGSTAVELLTRYYEGQLTTFSEIDVEDTVETPEVRVTEAAKKV  672 (1033)
Q Consensus       593 dLIPw~ls~q~~d~~f~~lsg~RIVRIAvhP~~q~~GyGsraL~~L~~y~~g~~~~~~e~~~~~~~~~~~~~~~~~~~~~  672 (1033)
                                       .-..+.|.+|+|||+|||+|+|+++|+.++++...+....-           ...++++..++
T Consensus        67 -----------------~~~~~~I~~i~V~p~~rg~GiG~~Ll~~~~~~a~~~G~~~i-----------~L~t~~~~~~~  118 (180)
T d1n71a_          67 -----------------GITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITI-----------YLGTDDLDHGT  118 (180)
T ss_dssp             -----------------TTTEEEEEEEEECTTSCSSSHHHHHHHHHHHHHHHTTCCEE-----------EEEEECSSSCB
T ss_pred             -----------------CCCEEEEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEE-----------EEEECCCCCCC
T ss_conf             -----------------99889999999836772168999999999999998799799-----------99825743422


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf             0000025678888820000001287786528972488987899999799828976514567889615899713886
Q 001672          673 SLLEENIKPKTNLPPLLVHLRERQPEKLNYIGVSFGLTLDLFRFWRKHKFAPFYVSQNANAVTGEHTCMVLKPLHS  748 (1033)
Q Consensus       673 ~l~~~~i~~~~~~p~ll~~l~e~~~~~lDylGvSFG~T~~Ll~FW~k~gF~pVylrq~~n~~TGEhS~imlk~L~~  748 (1033)
                      .     +...+-.|+......+.           .-.+....+||+|+||..+...+..|. .|.+..+|.|+|.+
T Consensus       119 ~-----~~~~~~~~~~~~~~~~~-----------~~~n~~a~~fY~k~Gf~~~g~~~~~~g-~~~~~~~m~k~l~~  177 (180)
T d1n71a_         119 T-----LSQTDLYEHTFDKVASI-----------QNLREHPYEFYEKLGYKIVGVLPNANG-WDKPDIWMAKTIIP  177 (180)
T ss_dssp             T-----TSSSCTTSSHHHHHHTC-----------CBSSCCTHHHHHHTTCEEEEEETTTTS-TTCCEEEEEEECSC
T ss_pred             C-----HHHHHCCCCCCCCCCHH-----------CCCCHHHHHHHHHCCCEEEEEECCCCC-CCCCCEEEEEECCC
T ss_conf             0-----23332012211000000-----------015287999999779989866667788-99974999986579
>d1tiqa_ d.108.1.1 (A:) Protease synthase and sporulation negative regulatory protein PaiA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2atra1 d.108.1.1 (A:1-137) Probable acetyltransferase SP0256 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1ghea_ d.108.1.1 (A:) Tabtoxin resistance protein {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1z4ra1 d.108.1.1 (A:497-658) Catalytic domain of GCN5 histone acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qsra_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Tetrahymena thermophila [TaxId: 5911]} Back     information, alignment and structure
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1y9ka1 d.108.1.1 (A:1-152) IAA acetyltransferase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1wwza1 d.108.1.1 (A:1-157) Hypothetical protein PH1933 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y9wa1 d.108.1.1 (A:1-140) Probable acetyltransferase BC2806 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2g3aa1 d.108.1.1 (A:1-137) Probable acetyltransferase Atu2258 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ca1 d.108.1.1 (A:1001-1160) Putative acetyltransferase PA4794 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]} Back     information, alignment and structure
>d2fl4a1 d.108.1.1 (A:1-146) Probable spermine/spermidine acetyltransferase EF1086 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1q2ya_ d.108.1.1 (A:) Probable acetyltransferase YjcF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vkca_ d.108.1.1 (A:) Putative acetyltransferase PF0028 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2fiaa1 d.108.1.1 (A:1-157) Probable acetyltransferase EF1919 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2fiwa1 d.108.1.1 (A:2-157) Probable N-acetyltransferase RPA1999 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2cy2a1 d.108.1.1 (A:1-174) Probable acetyltransferase TTHA1209 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1u6ma_ d.108.1.1 (A:) Putative acetyltransferase EF0945 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ufha_ d.108.1.1 (A:) Putative acetyltransferase YycN {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ygha_ d.108.1.1 (A:) Catalytic domain of GCN5 histone acetyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yvka1 d.108.1.1 (A:5-156) Hypothetical protein YvbK (BSu33890) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ae6a1 d.108.1.1 (A:1-161) Putative acetyltransferase EF0244 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1i12a_ d.108.1.1 (A:) Glucosamine-phosphate N-acetyltransferase GNA1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m4ia_ d.108.1.1 (A:) Aminoglycoside 2'-N-acetyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ge3a1 d.108.1.1 (A:6-169) Probable acetyltransferase Atu2290 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1sqha_ d.108.1.5 (A:) Hypothetical protein cg14615-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2hv2a2 d.108.1.10 (A:2-286) Hypothetical protein EF1021 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bo4a_ d.108.1.1 (A:) Aminoglycoside 3-N-acetyltransferase {Serratia marcescens [TaxId: 615]} Back     information, alignment and structure
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i00a2 d.108.1.10 (A:10-300) Putative acetyltransferase EF2353 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1nsla_ d.108.1.1 (A:) Probable acetyltransferase YdaF {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fcka1 d.108.1.1 (A:1-178) Putative ribosomal-protein-serine acetyltransferase VC1889 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s7ka1 d.108.1.1 (A:3-176) L7/L12-Ribosomal-protein-serine acetyltransferase RimL {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1ro5a_ d.108.1.3 (A:) Autoinducer synthesis protein LasI {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1r57a_ d.108.1.1 (A:) Hypothetical protein SA2309 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yk3a1 d.108.1.1 (A:10-207) Hypothetical protein Rv1347c/MT1389 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1boba_ d.108.1.1 (A:) Histone acetyltransferase HAT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yrea1 d.108.1.1 (A:11-193) Hypothetical protein PA3270 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p0ha_ d.108.1.1 (A:) Mycothiol synthase MshD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure