Citrus Sinensis ID: 001675

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030---
MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
ccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccEccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcEcccccccHHHHHHHHcccHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MDLPSLALILqgalspnpeerKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKnfiaknwaphepneqqkisqvDKDMVRDHILVFVAQVPPLLRVQLGECLKTIihadypeqwpHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpvYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSiyleipkqlldpnvFNAWMILFLNVlerpvpsegepadpeqrkswgwwkvKKWTVHILNRLYTrfgdlklqnpenRAFAQMFQKNYAGKILECHLNLLNrirvggylpdRVTNLILQYLSNSisknsmynllqPRLDVLLFEIVFPlmcfndndqklwdedpheyvRKGYDIIedlysprtasMDFVSELVRKRGKENLQKFIQFIVGIFKrydetpveykpyrqkdgALLAIGALCDklkqtepykSELERMLVQhvfpefsspvghlrAKAAWVAGQYAHINFSDQNNFRKALHSVVsglrdpelpvrvDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNtaeadedaddpgaLAAVGCLRAISTILEsvsrlphlfvqieptLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAidffpnilvpldnyisrgtahfltckepdyqQSLWSMVSSIMadknledgdiepapKLIEVVFQNCkgqvdhwvepYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNglrvnfkrehdkkvccLGLTSLLALTadqlpgeaLGRVFRATLDLLVAYKEQVAEAAkdeeaeddddmdgfqtddedddgdgsdkemgvdaedgdeaDSIRLQKLAAQARafrphdeddddsdddfsddeelqspidevdpfvFFVDTIKvmqasdplrfQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFiaknwaphepnEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRkyefksdeertpVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSegepadpeqrkswgwwkvKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILesvsrlphlfVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNckgqvdhwvePYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAeaakdeeaeddddmdgfqtddedddgdgsDKEMGVDAEDGDEADSIRLQKLAAQArafrphdeddddsddDFSDDeelqspidevdpFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEkasaaatq
MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTaeadedaddpgalaaVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVaeaakdeeaeddddmdgfqtddedddgdgsdKEMGVDAEDGDEADSIRLQKLAAQARAFRPHdeddddsdddfsddeeLQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVeiekekvekasaaaTQ
****************************NQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAP***********VDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLE****************SWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQ*************************************************************************************EVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVA************************
MDLPSLALILQGALSPNPE*RKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY*E**VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAE************MDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQ***********************
MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV************KSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVA**************DGFQTD**********************ADSIRLQKLAA************************LQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANG********RVEIE*************
MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDE**************************MGVDAED***ADSIRLQK************************DEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE*************
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MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIEKEKVEKASAAATQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1033 2.2.26 [Sep-21-2011]
Q55CX91065 Probable importin-7 homol yes no 0.936 0.907 0.297 1e-130
Q9EPL81038 Importin-7 OS=Mus musculu yes no 0.961 0.956 0.305 1e-122
O953731038 Importin-7 OS=Homo sapien yes no 0.961 0.956 0.306 1e-122
O153971037 Importin-8 OS=Homo sapien no no 0.966 0.962 0.297 1e-117
Q7TMY71010 Importin-8 OS=Mus musculu no no 0.800 0.818 0.307 1e-113
O598091029 Probable importin c550.11 yes no 0.933 0.936 0.283 1e-109
P469701048 Nonsense-mediated mRNA de yes no 0.659 0.649 0.253 5e-55
Q04175944 Importin beta SMX1 OS=Sac no no 0.729 0.798 0.222 1e-37
Q8SR54939 Probable importin ECU10_0 yes no 0.788 0.867 0.194 6e-20
Q9XZU1975 Exportin-2 OS=Drosophila no no 0.429 0.455 0.231 9e-18
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1 Back     alignment and function desciption
 Score =  467 bits (1202), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 309/1039 (29%), Positives = 546/1039 (52%), Gaps = 72/1039 (6%)

Query: 9    ILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAK 68
            + Q  L  +    KAAE  L Q + T  +   LL+I+  N  D+S+RQ  SI  KN I  
Sbjct: 10   LFQHTLHHDANVIKAAEAQLQQIKVTDGYSRILLKILASNEVDISIRQGVSIFLKNMIIT 69

Query: 69   NWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
             W   E  ++  I+Q D + ++++++  +     L++ Q+   ++ I + D+PE+W  LL
Sbjct: 70   KWRGAE--DESPITQEDAEFIKENLIDLLVHSHHLVQNQIEAMIEIIANRDFPEKWTSLL 127

Query: 129  -DWVKH-NLQDQQVYGALFV---LRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRL 183
               +++ N QD ++  A      L I   +Y    D+++  +Y IV E F  LL I   L
Sbjct: 128  PKSIQYINTQDVKLILAGLTSIQLGIKRFRYVTMGDKKKELLYTIVNEIFPLLLQILEFL 187

Query: 184  VQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPV-PSEGE 242
             Q  + ++E A + K + KIF  +I+ EIP  L+ P VFN W+  F+ +++RP+ P E  
Sbjct: 188  SQ--HQTIESALMQKKVIKIFGYAIHFEIPDLLIQPEVFNKWLSQFVRIIQRPITPQENV 245

Query: 243  PADPEQRKSWGWWKVKKWTVHILNRLYTRFGD--LKLQNPENRAFAQMFQKNYAGKILEC 300
                + RK+  WW +K+ T  +LN L+ +         +   +A  ++F   Y+ ++++ 
Sbjct: 246  KHADDCRKN-QWWLLKRTTAKLLNLLFRKSATSVRSTDHSSVKALNKLFMPVYSVEVMKV 304

Query: 301  ---HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCF 357
                L+ L ++  G +  +R    +++Y S +I     Y  ++P L  L+ +++FP++CF
Sbjct: 305  FYEQLSTLEQLYKGVHY-ERYQQKLIEYFSFAIKYGVTYVAMKPWLSTLIQQVLFPIICF 363

Query: 358  NDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIF 417
            ND D +LW+ DP+E++R  ++      + R   ++F+ ++V KRG+ NL   + F +   
Sbjct: 364  NDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSL 423

Query: 418  KRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
             +Y+  T    K  R+KDG L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L
Sbjct: 424  NKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFL 483

Query: 477  RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
            +A+A  +  ++ +I F+D   F  AL  ++  + D +LPVRV +  ++ + V A + ++E
Sbjct: 484  KARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDE 543

Query: 537  IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
            +RPILPQLLD+ F L++E E+EDLV  +E+I+ +F  E+APYA+ LC+NL+  F R +  
Sbjct: 544  LRPILPQLLDKIFSLLSEAESEDLVIAIESIIQRFKHEIAPYAVNLCKNLSEQFLRLLEL 603

Query: 597  AEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
             E+DE  +     A+  CL    T+L ++  +P +F  +E  ++PI++++ T+D     +
Sbjct: 604  EESDESGE--SGFASQECLGVYCTLLRALKDIPDVFNSLEQQIVPILQKLFTSDHMMYLD 661

Query: 657  EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
            E L I++++T++  +IS  +WSL+P +M    + A DF  + + PLDNYIS GT +FL+ 
Sbjct: 662  EALRILTFVTYYPKSISPLVWSLFPQIMNLFDECACDFASSYVNPLDNYISYGTEYFLSN 721

Query: 717  KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
            ++  Y + +++M   ++ D N +  D     K++E + Q  KG++D+ + P L +   RL
Sbjct: 722  QQ--YIEMVFNMYKKMVGDINQQPVDAGDCCKIMESLIQRAKGRIDYMIVPVLELACGRL 779

Query: 777  RRAEKSYLK-----CLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNG 831
               +K+  K       L+++IA+ +YYN  ++   L    +   +F LWF  ++      
Sbjct: 780  LNTDKNNQKSKEFTVYLLEIIANCIYYNPLISTQYLESKNLVEPIFGLWFNRIK------ 833

Query: 832  LRVNFKREHDKKVCCLGLTSLLALTADQ-----LPGEALGRVFRATLDLLVAYKEQVAEA 886
               +F+R +DKK+  L  +SLL L              L ++ + T D+L   KE   + 
Sbjct: 834  ---HFQRFYDKKISVLAFSSLLTLNPSPNFVKFGTSLILEKMLQFTKDMLSIEKELDKQE 890

Query: 887  AKDEEAEDDDDMDGFQTD--DEDDDGDGSDKEM----------GVDAEDGDEADSIRLQK 934
            A+ E+   D  +   + +  DE+D+ D  D               D +  DE + + L  
Sbjct: 891  AEREQKIKDGTLKPEEEEFIDENDEEDYFDNHKFEFEFTEIPDNQDCQHDDEGE-VFLDD 949

Query: 935  LAAQARAFRPHDEDDDDSDDD----------------FSDDE--ELQSPIDEVDPFVFFV 976
            +      F    +  +D  D+                F D++  + ++PIDEVD F F +
Sbjct: 950  IEKATEYFENGGDLGEDEGDNFDDQNDDDDQDSEEDLFEDEDTPDFETPIDEVDGFEFMI 1009

Query: 977  DTIKVMQASDPLRFQNLTQ 995
            ++I+     +P   Q +++
Sbjct: 1010 NSIQNFFQINPTCIQQISE 1028
May function in nuclear protein import.
Dictyostelium discoideum (taxid: 44689)
>sp|Q9EPL8|IPO7_MOUSE Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2 Back     alignment and function description
>sp|O95373|IPO7_HUMAN Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1 Back     alignment and function description
>sp|O15397|IPO8_HUMAN Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2 Back     alignment and function description
>sp|Q7TMY7|IPO8_MOUSE Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=3 Back     alignment and function description
>sp|O59809|IMA3_SCHPO Probable importin c550.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.11 PE=3 SV=1 Back     alignment and function description
>sp|P46970|NMD5_YEAST Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD5 PE=1 SV=2 Back     alignment and function description
>sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SR54|IMPO_ENCCU Probable importin ECU10_0620 OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU10_0620 PE=1 SV=1 Back     alignment and function description
>sp|Q9XZU1|XPO2_DROME Exportin-2 OS=Drosophila melanogaster GN=Cas PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
2254337071034 PREDICTED: probable importin-7 homolog [ 0.999 0.998 0.905 0.0
2555736711032 Importin-7, putative [Ricinus communis] 0.998 0.999 0.911 0.0
3565689051032 PREDICTED: probable importin-7 homolog [ 0.998 0.999 0.889 0.0
2241288921045 predicted protein [Populus trichocarpa] 0.999 0.987 0.890 0.0
2960896301080 unnamed protein product [Vitis vinifera] 0.999 0.955 0.866 0.0
3565266251032 PREDICTED: probable importin-7 homolog [ 0.998 0.999 0.885 0.0
2240690641058 predicted protein [Populus trichocarpa] 0.999 0.975 0.868 0.0
3575027571035 Importin-7 [Medicago truncatula] gi|3554 0.998 0.996 0.874 0.0
4494666971029 PREDICTED: probable importin-7 homolog [ 0.996 1.0 0.848 0.0
4495084661029 PREDICTED: probable importin-7 homolog [ 0.996 1.0 0.854 0.0
>gi|225433707|ref|XP_002268048.1| PREDICTED: probable importin-7 homolog [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1872 bits (4850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 935/1033 (90%), Positives = 985/1033 (95%), Gaps = 1/1033 (0%)

Query: 1    MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASI 60
            MDLPSLA+ILQ ALSPNP++ KAAE SLNQFQYTPQHLVRLLQIIVD NCD++VRQVASI
Sbjct: 1    MDLPSLAVILQAALSPNPDQLKAAEESLNQFQYTPQHLVRLLQIIVDGNCDMAVRQVASI 60

Query: 61   HFKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADY 120
            HFKNFIAKNW+PHEP+EQQKISQ DK+MVRD+ILV+VAQVPPLLR QLGECLKTI+HADY
Sbjct: 61   HFKNFIAKNWSPHEPDEQQKISQSDKEMVRDNILVYVAQVPPLLRAQLGECLKTIVHADY 120

Query: 121  PEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIF 180
            PEQWP LLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPV+RIVEETF HLL IF
Sbjct: 121  PEQWPRLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVHRIVEETFPHLLGIF 180

Query: 181  NRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSE 240
            NRLVQIVNP LEVA+LIKLICKIFWSSIYLEIPKQL DPNVFN+WMILFLNVLERPVP E
Sbjct: 181  NRLVQIVNPPLEVAELIKLICKIFWSSIYLEIPKQLFDPNVFNSWMILFLNVLERPVPLE 240

Query: 241  GEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILEC 300
            G+PADPE RKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKN+AGKILEC
Sbjct: 241  GQPADPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNFAGKILEC 300

Query: 301  HLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDN 360
            HLNLLN IR+GGYLPDRV NLILQYLSNSISK SMY LLQPRLDVLLFEIVFPLMCFNDN
Sbjct: 301  HLNLLNVIRMGGYLPDRVINLILQYLSNSISKMSMYQLLQPRLDVLLFEIVFPLMCFNDN 360

Query: 361  DQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY 420
            DQKLWDEDPHEYVRKGYDIIEDLYSPRTA+MDFVSELVRKR KENL KFIQFIV IFKRY
Sbjct: 361  DQKLWDEDPHEYVRKGYDIIEDLYSPRTAAMDFVSELVRKRAKENLHKFIQFIVEIFKRY 420

Query: 421  DETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKA 480
            DE  +EYK YRQKDGALLAIGALCDKLKQTEPYKSELE MLVQHVFPEFSSPVGHLRAKA
Sbjct: 421  DEASLEYKAYRQKDGALLAIGALCDKLKQTEPYKSELEHMLVQHVFPEFSSPVGHLRAKA 480

Query: 481  AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPI 540
            AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEAC+DLNEIRPI
Sbjct: 481  AWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACKDLNEIRPI 540

Query: 541  LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD 600
            LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD
Sbjct: 541  LPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEAD 600

Query: 601  EDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 660
            ++ADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE
Sbjct: 601  DEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLE 660

Query: 661  IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPD 720
            IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISR TAHFLTCK+P+
Sbjct: 661  IVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRSTAHFLTCKDPN 720

Query: 721  YQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRRAE 780
            YQQSLW M+S+IM D+N+ED DIEPAPKLIEVVFQNC+GQVD WVEPYLRITVERLRRAE
Sbjct: 721  YQQSLWDMISTIMPDRNMEDSDIEPAPKLIEVVFQNCRGQVDQWVEPYLRITVERLRRAE 780

Query: 781  KSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREH 840
            K YLKCLL+QVIADALYYN++LTLSILHKLGVATE+F LWFQMLQQVKK+G+R NFKREH
Sbjct: 781  KPYLKCLLIQVIADALYYNAALTLSILHKLGVATEIFGLWFQMLQQVKKSGVRANFKREH 840

Query: 841  DKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQV-AEAAKDEEAEDDDDMD 899
            DKKVCCLGLTSLLAL ADQLPGEALGR+FRATLDLLVAYK+QV   A ++E  +DDDDMD
Sbjct: 841  DKKVCCLGLTSLLALPADQLPGEALGRIFRATLDLLVAYKDQVAEAAKEEEAEDDDDDMD 900

Query: 900  GFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDD 959
            GFQTDDED+DGDGSDKEMG DAEDGDEADSIRLQKLAAQA+  RP+DEDDDDSD+D+SDD
Sbjct: 901  GFQTDDEDEDGDGSDKEMGFDAEDGDEADSIRLQKLAAQAKDLRPNDEDDDDSDNDYSDD 960

Query: 960  EELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEI 1019
            EELQSPIDEVDPF+FFVDT+K MQASDPLR QNLTQTL+F YQALANGVAQHA+QRRVEI
Sbjct: 961  EELQSPIDEVDPFIFFVDTVKAMQASDPLRLQNLTQTLDFHYQALANGVAQHAEQRRVEI 1020

Query: 1020 EKEKVEKASAAAT 1032
            EKEK+EKASA   
Sbjct: 1021 EKEKMEKASAGGA 1033

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573671|ref|XP_002527757.1| Importin-7, putative [Ricinus communis] gi|223532844|gb|EEF34618.1| Importin-7, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356568905|ref|XP_003552648.1| PREDICTED: probable importin-7 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224128892|ref|XP_002320447.1| predicted protein [Populus trichocarpa] gi|222861220|gb|EEE98762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296089630|emb|CBI39449.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356526625|ref|XP_003531917.1| PREDICTED: probable importin-7 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224069064|ref|XP_002302891.1| predicted protein [Populus trichocarpa] gi|222844617|gb|EEE82164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357502757|ref|XP_003621667.1| Importin-7 [Medicago truncatula] gi|355496682|gb|AES77885.1| Importin-7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449466697|ref|XP_004151062.1| PREDICTED: probable importin-7 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|449508466|ref|XP_004163320.1| PREDICTED: probable importin-7 homolog [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1033
TAIR|locus:20659391040 SAD2 "AT2G31660" [Arabidopsis 0.983 0.976 0.748 0.0
TAIR|locus:20777151030 AT3G59020 "AT3G59020" [Arabido 0.978 0.981 0.723 0.0
DICTYBASE|DDB_G02698601065 DDB_G0269860 "putative importi 0.800 0.776 0.313 1.5e-123
FB|FBgn00262521049 msk "moleskin" [Drosophila mel 0.827 0.815 0.302 1.6e-117
ZFIN|ZDB-GENE-030131-4581039 ipo7 "importin 7" [Danio rerio 0.813 0.808 0.317 8.7e-115
UNIPROTKB|E2R7031036 IPO8 "Uncharacterized protein" 0.832 0.830 0.305 1.4e-114
UNIPROTKB|E1BGE51038 IPO7 "Uncharacterized protein" 0.959 0.954 0.290 7.3e-114
UNIPROTKB|F6X4J21038 IPO7 "Uncharacterized protein" 0.959 0.954 0.290 7.3e-114
UNIPROTKB|O953731038 IPO7 "Importin-7" [Homo sapien 0.959 0.954 0.290 7.3e-114
MGI|MGI:21524141038 Ipo7 "importin 7" [Mus musculu 0.959 0.954 0.290 7.3e-114
TAIR|locus:2065939 SAD2 "AT2G31660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4007 (1415.6 bits), Expect = 0., P = 0.
 Identities = 764/1021 (74%), Positives = 862/1021 (84%)

Query:     1 MDLPSLALILQ-GALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVAS 59
             MDL SLALIL+  ALSP P+ERK +E  LNQ ++TPQHLVRLLQI VD NCD++VRQ+AS
Sbjct:     1 MDLHSLALILRTAALSPIPDERKVSEQQLNQLEHTPQHLVRLLQIAVDGNCDMAVRQIAS 60

Query:    60 IHFKNFIAKNWAPHE--PN-EQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTII 116
             I FKN IAKNW+P +  P   QQ+I + DK++VRD+ILV+V QVP LLR QLGE LKTII
Sbjct:    61 IQFKNLIAKNWSPEDCGPAVRQQQIFESDKELVRDNILVYVTQVPTLLRSQLGESLKTII 120

Query:   117 HADYPEQWPHLLDWVKHNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHL 176
             +ADYPEQWP LLDWVK+NLQ+QQ+YGALFVLRILSRKYEFKSDEERTPV RIVEETF  L
Sbjct:   121 YADYPEQWPRLLDWVKYNLQNQQIYGALFVLRILSRKYEFKSDEERTPVSRIVEETFPQL 180

Query:   177 LNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP 236
             L IFN L+QI NPSLE+A+L+KLICKIFWSSIYLE+P+QL D NVFNAWM+LFL+V ERP
Sbjct:   181 LTIFNGLIQIPNPSLEIAELMKLICKIFWSSIYLELPRQLFDLNVFNAWMVLFLSVSERP 240

Query:   237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGK 296
             VP EG+P DPE RKSWGWWKVKKWTVHILNRLY+RFGD KLQ+PEN+ FAQMFQKNYAG+
Sbjct:   241 VPVEGQPMDPELRKSWGWWKVKKWTVHILNRLYSRFGDPKLQSPENKPFAQMFQKNYAGR 300

Query:   297 ILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMC 356
             ILE HLN LN IRVGGYLPDRV NL+LQYLSNSISKNSMY LL PRLDVLLFEIVFPLMC
Sbjct:   301 ILEGHLNFLNTIRVGGYLPDRVINLLLQYLSNSISKNSMYKLLLPRLDVLLFEIVFPLMC 360

Query:   357 FNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGI 416
             FNDNDQKLW+EDPHEYVRKGY+IIEDLYSPRTASMDFV+ELVRKRGKENL KF++F+V I
Sbjct:   361 FNDNDQKLWEEDPHEYVRKGYNIIEDLYSPRTASMDFVNELVRKRGKENLPKFVKFVVEI 420

Query:   417 FKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL 476
             F  Y++  VE KPYRQKDGA+LA+GALCDKLKQT+PYKS+LE MLVQH+FP+F+SPVGHL
Sbjct:   421 FLSYEKATVEEKPYRQKDGAMLAVGALCDKLKQTDPYKSQLELMLVQHIFPDFNSPVGHL 480

Query:   477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNE 536
             RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP+LPVRVDSVFALRSFVEAC+DLNE
Sbjct:   481 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPDLPVRVDSVFALRSFVEACKDLNE 540

Query:   537 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNT 596
             IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAP+A GLCQNLAAAFWRC+NT
Sbjct:   541 IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPFAFGLCQNLAAAFWRCLNT 600

Query:   597 XXXXXXXXXXXXXXXVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFE 656
                            VGCLRAISTILESVS LP LFV+IEPT+LPIM++MLTTDGQEVFE
Sbjct:   601 SEANDDSDDMGALAAVGCLRAISTILESVSSLPQLFVEIEPTILPIMQKMLTTDGQEVFE 660

Query:   657 EVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTC 716
             EVLEI SYMTF+SP+ISL++WSLWPLM+EAL DW IDFFPNILVP+DN+ISRGTAHFLTC
Sbjct:   661 EVLEIASYMTFYSPSISLDIWSLWPLMVEALVDWGIDFFPNILVPMDNFISRGTAHFLTC 720

Query:   717 KEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERL 776
             KEPDYQQSL++++S++M D+N+ED +IE APKLIEVVFQNCKGQVD WVEPYLR+TV+RL
Sbjct:   721 KEPDYQQSLYNVLSTLMTDRNIEDSEIESAPKLIEVVFQNCKGQVDQWVEPYLRLTVDRL 780

Query:   777 RRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNF 836
             +RAE SY+K LL+QV+A+ LYYN  LTL +LH  G+A++VF+LWFQMLQQ +K+GL  NF
Sbjct:   781 QRAETSYVKSLLIQVVANMLYYNPGLTLGVLHNTGLASKVFDLWFQMLQQKRKSGLPANF 840

Query:   837 KREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVXXXXXXXXXXXXX 896
             KREHDKKVCCLGLTSLLAL   Q P EAL RVFRATLDLLVAYK Q+             
Sbjct:   841 KREHDKKVCCLGLTSLLALPGGQFPDEALQRVFRATLDLLVAYKNQLAEAAKETEVDYEE 900

Query:   897 XXXXXXXXXXXXXXXXXXKEMGVDAEDGDEADSIRLQKLAAQARAFRPHXXXXXXXXXXX 956
                                EM  D E+GDEA S++LQKLAAQA+AF              
Sbjct:   901 EMNGLQSSDDDYDDDGSDGEMD-DTEEGDEAQSVKLQKLAAQAKAFHYDDDDDDDSDDDF 959

Query:   957 XXXXXLQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRR 1016
                   QSPIDEVD FVFFVD I+VMQASD  RFQNL Q+L+F YQA+ANG+AQHA+ RR
Sbjct:   960 SDEDEFQSPIDEVDAFVFFVDAIRVMQASDAQRFQNLNQSLDFTYQAIANGIAQHAELRR 1019

Query:  1017 V 1017
             V
Sbjct:  1020 V 1020
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS;IDA
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS;IDA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0006606 "protein import into nucleus" evidence=RCA;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0035280 "miRNA loading onto RISC involved in gene silencing by miRNA" evidence=IMP
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TAIR|locus:2077715 AT3G59020 "AT3G59020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269860 DDB_G0269860 "putative importin 7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0026252 msk "moleskin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-458 ipo7 "importin 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R703 IPO8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGE5 IPO7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6X4J2 IPO7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95373 IPO7 "Importin-7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2152414 Ipo7 "importin 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9EPL8IPO7_MOUSENo assigned EC number0.30510.96120.9566yesno
O95373IPO7_HUMANNo assigned EC number0.30600.96120.9566yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033560001
SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (1034 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00014046001
SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa)
   •  • 0.471
GSVIVG00021307001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)
   •    0.434
GSVIVG00008629001
SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (922 aa)
   •  ••0.430
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
   •    0.416
GSVIVG00001918001
SubName- Full=Chromosome chr5 scaffold_124, whole genome shotgun sequence; (1153 aa)
   •    0.406
GSVIVG00025547001
RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa)
   •    0.402

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 1e-116
COG5657947 COG5657, CSE1, CAS/CSE protein involved in chromos 3e-16
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 3e-13
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 3e-10
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-05
pfam09073424 pfam09073, BUD22, BUD22 3e-05
TIGR01651 600 TIGR01651, CobT, cobaltochelatase, CobT subunit 2e-04
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 3e-04
pfam05285317 pfam05285, SDA1, SDA1 6e-04
pfam04147 809 pfam04147, Nop14, Nop14-like family 9e-04
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.001
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 0.002
PRK14891131 PRK14891, PRK14891, 50S ribosomal protein L24e/unk 0.002
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.003
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.004
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  381 bits (979), Expect = e-116
 Identities = 232/1007 (23%), Positives = 422/1007 (41%), Gaps = 84/1007 (8%)

Query: 14  LSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNW--- 70
           L  +  +R  AE  L   +  P  ++ LL I   +  DL+V+  A+I+FKN I ++W   
Sbjct: 13  LDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSK 72

Query: 71  --APHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLL 128
                + +E+ +     K  + ++IL      P + R  L   L  I   D P     L 
Sbjct: 73  RDDGIKADEKSEA----KKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWGLF 128

Query: 129 DWVK---HNLQDQQVYGALFVLRILSRKYEFKSDEERTPVYRIVEETFHHLLNIFNRLVQ 185
                   + +   VY  L  L  L + Y +K ++E+  +  ++   F  L  +   L  
Sbjct: 129 PKAANLLRSSEANHVYTGLLCLEELFKAYRWKYNDEQVDILMLITALFPILEKVGGNLES 188

Query: 186 IVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPAD 245
             N      + + LI K F S  Y  +P  L     F++W  L L +L++P+P+E    D
Sbjct: 189 QGN--YGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRILQKPLPNEVLSLD 246

Query: 246 PEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLL 305
           PE R    W K KKW  + L R + R+     +     +F   F       IL      +
Sbjct: 247 PEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSY-LSFYITFM-TRVPMILATFFKQI 304

Query: 306 NRIRVGG-YLPDRVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKL 364
                G  +L D     I  ++   +  +  + L++P L  ++  ++FPL+C ++ +++L
Sbjct: 305 EEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEEL 364

Query: 365 WDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETP 424
           ++ DP EY+R+ YD  ++  SP  A++ F+     KR +E  Q  + F++ I  +   TP
Sbjct: 365 FENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATP 424

Query: 425 VEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVA 484
                 RQ +GAL  + ++   + +  P  + +E  +V HV P F S  G L+++A    
Sbjct: 425 SNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFI 484

Query: 485 GQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQL 544
                 +F D     +A  +  + L++  LPV +++  AL+ F+   +   +    +P+ 
Sbjct: 485 STIE-EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPET 543

Query: 545 LDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRC-----MNTAEA 599
           +++   L N  E + L   +E+ V+ F EE++P+A  L  +L   F +       N+++ 
Sbjct: 544 MEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT 603

Query: 600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVL 659
               DD   +AA G LR I +++ S+   P +   +E +L P++  +L  +  + ++E L
Sbjct: 604 SSVVDDK-QMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL 662

Query: 660 EIVSYMTFFSPTISLEMWSLWPLMMEALADW-AIDFFPNILVPLDNYISRGTAHFLTCKE 718
           +I+   TF S  I   MW ++ L++  L D     +   +   LDN+I+ G   F+    
Sbjct: 663 DILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFM--DA 720

Query: 719 PDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLR---ITVER 775
             Y      +    +  +     D     ++IE +  N + ++     P       +  +
Sbjct: 721 GIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780

Query: 776 LRRAEKSYLKCLLVQVIADALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVN 835
           +           L ++I + L      TL IL + G     F  WF  +           
Sbjct: 781 MIDELGPASVYAL-ELIINNLILRPKETLQILEEQGYLQSFFEKWFSQIP---------K 830

Query: 836 FKREHDKKVCCLGLTSLLALTADQLPGE----ALGRVFRATLDLLVAYKEQVAEAAKDEE 891
           FKR HDKK+  L + +++ L       E     LG V  A +  L       A+   DE+
Sbjct: 831 FKRVHDKKLSVLAILTIIRLQEVGALPELLVHNLGEVLVALVTSLPEAIRLRAKEKDDED 890

Query: 892 AEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDD 951
             + D      T+ ++           VDA D  E                     ++D 
Sbjct: 891 FPEPD----LTTEYDE----------CVDASDISETF-----------------ILEEDP 919

Query: 952 SDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLE 998
                      ++ +D+VDPF +F + +  +Q +    ++ +  TL 
Sbjct: 920 L---------FETELDQVDPFGYFSEFLSNLQPASGTYYEKIISTLT 957

Length = 970
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|220102 pfam09073, BUD22, BUD22 Back     alignment and domain information
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1033
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
COG5656970 SXM1 Importin, protein involved in nuclear import 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG22741005 consensus Predicted importin 9 [Intracellular traf 100.0
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 100.0
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.94
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.89
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.73
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.69
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.55
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.54
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.52
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.5
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.34
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.3
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.29
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.86
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.7
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.22
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 98.12
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.97
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 97.93
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.9
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.8
KOG1242569 consensus Protein containing adaptin N-terminal re 97.79
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.75
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.62
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.53
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.52
PTZ00429746 beta-adaptin; Provisional 97.51
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.49
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.41
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.37
KOG22741005 consensus Predicted importin 9 [Intracellular traf 97.29
PTZ00429746 beta-adaptin; Provisional 97.26
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 97.26
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 97.25
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.25
KOG1242569 consensus Protein containing adaptin N-terminal re 97.23
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.04
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 96.96
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.93
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.88
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.82
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.81
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.7
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.66
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.65
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.64
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.53
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.31
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.13
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.98
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.97
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 95.97
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 95.96
PF08167165 RIX1: rRNA processing/ribosome biogenesis 95.9
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.71
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 95.7
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.59
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 95.42
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 95.37
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.36
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 95.3
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.23
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 95.13
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.09
PF14500262 MMS19_N: Dos2-interacting transcription regulator 94.92
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 94.81
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.71
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 94.66
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.49
PRK09687280 putative lyase; Provisional 93.97
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 93.77
PRK09687280 putative lyase; Provisional 93.73
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 93.63
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 93.41
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 93.29
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.1
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.94
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 92.88
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 92.7
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 92.57
PF05804708 KAP: Kinesin-associated protein (KAP) 92.51
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 92.4
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 92.35
PF05004309 IFRD: Interferon-related developmental regulator ( 92.08
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 91.99
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.8
PF08167165 RIX1: rRNA processing/ribosome biogenesis 91.42
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 90.71
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 90.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 90.48
COG5096757 Vesicle coat complex, various subunits [Intracellu 89.79
PF1036392 DUF2435: Protein of unknown function (DUF2435) 89.39
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 89.06
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 89.02
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 89.01
KOG4653982 consensus Uncharacterized conserved protein [Funct 88.73
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 88.34
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 87.68
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 87.07
KOG4653982 consensus Uncharacterized conserved protein [Funct 86.18
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 85.79
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 84.92
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 84.83
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 84.77
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 84.46
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 83.91
KOG2549576 consensus Transcription initiation factor TFIID, s 83.41
KOG2956516 consensus CLIP-associating protein [General functi 83.4
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 83.04
PF14500262 MMS19_N: Dos2-interacting transcription regulator 82.15
PF05536543 Neurochondrin: Neurochondrin 81.91
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 81.21
KOG4224550 consensus Armadillo repeat protein VAC8 required f 80.96
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 80.72
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 80.71
PF05804708 KAP: Kinesin-associated protein (KAP) 80.12
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-166  Score=1399.65  Aligned_cols=998  Identities=46%  Similarity=0.779  Sum_probs=914.5

Q ss_pred             CChHHHHHHHHHhcCCCHHHHHHHHHHHHHhhCCCChHHHHHHHHHhcCcChhhhHHHHHHHHHHHhhcCCCCCC-CcCC
Q 001675            1 MDLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEP-NEQQ   79 (1033)
Q Consensus         1 Md~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~I~~~W~~~~~-~~~~   79 (1033)
                      ||.+.+.++|.+|+++|++.|+.||++|++++++|||...|++|+.+++++.+|||+|||||||+|.++|+..+. ..+.
T Consensus         1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~   80 (1010)
T KOG1991|consen    1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPF   80 (1010)
T ss_pred             CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998642 2456


Q ss_pred             CCChhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHhchh---hHHHHHHHHHHHHHHhcc
Q 001675           80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF  156 (1033)
Q Consensus        80 ~l~~~~k~~ir~~Ll~~l~~~~~~ir~~la~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~  156 (1033)
                      .+++++|+.||++|+..+...|..||.|+..|+..|.+.|||++||++++.+...++++   .++|||.||++++|.|+|
T Consensus        81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~  160 (1010)
T KOG1991|consen   81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW  160 (1010)
T ss_pred             CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999998   589999999999999999


Q ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHhHHhhhhcCCcccCChhhHHHHHHHHHHHhcCC
Q 001675          157 KSDEERTPVYRIVEETFHHLLNIFNRLVQIVNPSLEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERP  236 (1033)
Q Consensus       157 ~~~~~~~~l~~i~~~~~p~l~~l~~~~~~~~~~~~~~~~~~~~~lki~~~l~~~~lp~~~~~~~~l~~w~~~~~~~l~~~  236 (1033)
                      |+.+.|.++..++..+||.+++++.+++..+  +.++.++.++|+|||++++++++|..+.+.+.|..||++|+++++++
T Consensus       161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~--s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rp  238 (1010)
T KOG1991|consen  161 KKDEERQPLGEAVEELFPDILQIFNGLLSQE--SYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRP  238 (1010)
T ss_pred             ccccccccHHHHHHHHHHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998764  46788999999999999999999999988999999999999999999


Q ss_pred             CCCCCCCCChhhhhhcchhHHHHHHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHhHHHHHHHHHHHHHhhhCCcccCH
Q 001675          237 VPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNRIRVGGYLPD  316 (1033)
Q Consensus       237 ~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~y~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~d  316 (1033)
                      +|.++++.|+++|..|+|||||||++++++|+|+|||+|+++.+++++|+++|..++++.+++.+++++..++.+.|+++
T Consensus       239 vP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~  318 (1010)
T KOG1991|consen  239 VPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSD  318 (1010)
T ss_pred             CChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence            99999999999999999999999999999999999999999889999999999999999999999999999877889999


Q ss_pred             HHHHHHHHHHHhhcCChhhhhhhhhhHHHHHHHHhhhcccCChhhHhhhhhCHHHHHHHhcCcccccCCHHHHHHHHHHH
Q 001675          317 RVTNLILQYLSNSISKNSMYNLLQPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSE  396 (1033)
Q Consensus       317 ~~~~~~l~fl~~~~~~~~~~~~~~~~l~~li~~~i~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s~R~aa~~ll~~  396 (1033)
                      +++++++.|+..|++.+.+|++++||+..++..+|||.||++++|+|+|++||.||+|+.+|.++|.+||+.||.+++..
T Consensus       319 rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~  398 (1010)
T KOG1991|consen  319 RVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTT  398 (1010)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcccchHHHHHHHHHHhhccccCCCCCCCchhhHhHHHHHHHHHHHhhhcCCcchhHHHHHHHHhhcccCCCCcccc
Q 001675          397 LVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHL  476 (1033)
Q Consensus       397 L~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~w~~keaal~~lg~la~~l~~~~~~~~~l~~~l~~~v~p~l~~~~~~l  476 (1033)
                      ++++||+++++.+++|+.+++++|..++.+..+.|++||||+++|++++.+.+..+|+..++.|+.+||+|+|+++.++|
T Consensus       399 ~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~L  478 (1010)
T KOG1991|consen  399 LVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYL  478 (1010)
T ss_pred             HHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHH
Confidence            99999999999999999999999988765567999999999999999999999889999999999999999999999999


Q ss_pred             hHHHHHHHHhhhccccCChhHHHHHHHHHHhcCC-CCCCchHHHHHHHHHHHHHhcc-ccchhhcchHHHHHHHHHHhhh
Q 001675          477 RAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLR-DPELPVRVDSVFALRSFVEACR-DLNEIRPILPQLLDEFFKLMNE  554 (1033)
Q Consensus       477 r~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~-d~~~~Vr~~Aa~al~~~~~~~~-~~~~l~p~l~~il~~L~~ll~~  554 (1033)
                      |+||||++++|++..|+++..+.+++..+.++|. |.++|||+.||.||+.|+.++. .++.++|+++++|+.|++++++
T Consensus       479 rarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  479 RARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998 8999999999999999999886 5577999999999999999999


Q ss_pred             hchhhHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhccCCCCCCChhHHHHHHHHHHHHHHHHhccCChHHHHH
Q 001675          555 VENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILESVSRLPHLFVQ  634 (1033)
Q Consensus       555 ~~~~~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~i~~li~~~~~~~~~~~~  634 (1033)
                      +++|.+..+|+++|..|+++++||+.+++++|..+|++++.+.+++.+.++++.+.++|+++||++|+.+++++|+++.+
T Consensus       559 ~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~  638 (1010)
T KOG1991|consen  559 VENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ  638 (1010)
T ss_pred             cchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999999998755555566789999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHcccCchhHHHHHHHHHHHhhhcCCCCCHhHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhccCccccc
Q 001675          635 IEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRGTAHFL  714 (1033)
Q Consensus       635 l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~isp~l~~l~~~l~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~l  714 (1033)
                      +++.++|++.++|.++..+|+++++++..++++.++.+||.||+++|.+++++.+++.+|++++++.|+||+.+|...++
T Consensus       639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~  718 (1010)
T KOG1991|consen  639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLL  718 (1010)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccCCcchHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHcccCchhchHHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Q 001675          715 TCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKGQVDHWVEPYLRITVERLRR-AEKSYLKCLLVQVIA  793 (1033)
Q Consensus       715 ~~~~~~~~~~il~i~~~~l~~~~~~~~~~~~a~~ll~~il~~~~~~~~~~l~~il~~~~~~l~~-~~~~~~~~~~l~v~~  793 (1033)
                        ++|.|++.++.++++++.++..+++|+..||+|++.++++|+|.+++|+|.+++.++.|+.. .++..++..++.|++
T Consensus       719 --s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvi  796 (1010)
T KOG1991|consen  719 --SNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVI  796 (1010)
T ss_pred             --ccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence              78899999999999999988888999999999999999999999999999999999999987 789999999999999


Q ss_pred             HHhhhChHHHHHHHHhhCchHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHhcc-ccCCCChhhHHHHHHHH
Q 001675          794 DALYYNSSLTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLAL-TADQLPGEALGRVFRAT  872 (1033)
Q Consensus       794 ~~~~~~~~~~l~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~d~Kl~~lal~~ll~~-~~~~l~~~~~~~~~~~~  872 (1033)
                      ++++|||..++++|+..|++..||..|++...         .+.+.||||+|++||++|++. +.+++|....+++++++
T Consensus       797 nalyynP~ltL~iLe~~~~~~~ff~~wf~~~~---------~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~l  867 (1010)
T KOG1991|consen  797 NALYYNPKLTLGILENQGFLNNFFTLWFQFIN---------QFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPAL  867 (1010)
T ss_pred             HHHHcCcHHHHHHHHHcCCcccHHHHHHHHHH---------HHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999         888899999999999999999 45667766778999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcCCCCCCCCCC
Q 001675          873 LDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDS  952 (1033)
Q Consensus       873 ~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  952 (1033)
                      +.++.+||++++++++..++.++++   +++  ++++|++..++ ++|+++   .+++|.+.+..-+....+..+++||+
T Consensus       868 v~L~~~Lp~ala~ra~~~ee~~~e~---~~~--~~~~~e~~~~d-~dD~d~---~d~d~~~~~~~~~~~~~~~~~~ddd~  938 (1010)
T KOG1991|consen  868 VELLLSLPEALAERAQVEEEDSEEG---EEE--DDDEEEDFIDD-EDDIDE---DDQDYLDEYGELALEKEDSLDDDDDF  938 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccc---cCC--CCcchhhccCc-cccccc---cchhHHHhhccccccccccccccccc
Confidence            9999999999999987554321111   111  11111111111 111111   11233444433211111112222222


Q ss_pred             -CC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHhhChHHHHHHhcCCCHHHHHHHHHHHHHHHHhHHHHH
Q 001675          953 -DD--DFSDDEELQSPIDEVDPFVFFVDTIKVMQASDPLRFQNLTQTLEFQYQALANGVAQHADQRRVEIE 1020 (1033)
Q Consensus       953 -~~--~~~dd~~~~~pl~~vd~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~ 1020 (1033)
                       +|  +.+||+.++||||+||+|.+|+++++.++.+++++|+.|+++|++++|+.||.+++++++||++++
T Consensus       939 d~~~~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~~~~~~r~a~~~ 1009 (1010)
T KOG1991|consen  939 DEDELDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTILTHAEQRRAVAE 1009 (1010)
T ss_pred             cchhccccccccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHHHhHHHHHHHhc
Confidence             22  446789999999999999999999999999999999999999999999999999999999998764

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
1wa5_C960 Crystal Structure Of The Exportin Cse1p Complexed W 4e-15
1z3h_A968 The Exportin Cse1 In Its Cargo-free, Cytoplasmic St 4e-15
>pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 188/439 (42%), Gaps = 42/439 (9%)
Query: 22  KAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQKI 81
           K +E +L Q +      + LL +I   N  LS R   ++ FKNFI + W     N     
Sbjct: 21  KTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80
Query: 82  SQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQQVY 141
           + V+  +++  I+  +  +P  L+VQ+GE + +I  +D+P++WP LL  +   L +  + 
Sbjct: 81  NNVE--LIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMV 138
Query: 142 ---GALFVLRILSRKYE--FKSDE---ERTPVYRIVEETFHHLLNIFNRLVQIV-----N 188
              G L V   + +++   F+SDE   E   V  +    F +LL   +   QI       
Sbjct: 139 TNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE--QITANENNK 196
Query: 189 PSLEVA-DLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILFLNVLERPVPSEGEPADPE 247
            SL +  D++ ++ K+++     +IP +  + N+    M +F   L    P   +P + E
Sbjct: 197 ASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNI-QVGMGIFHKYLSYSNPLLEDPDETE 254
Query: 248 QRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR 307
                   KVK     ++    TR+ D+         F  M       + ++   NLL  
Sbjct: 255 HASV--LIKVKSSIQELVQLYTTRYEDV---------FGPMI-----NEFIQITWNLLTS 298
Query: 308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLW 365
           I       D + +  L +L+        + +   +  ++ +  +I+ P +   + D +L+
Sbjct: 299 ISNQPKY-DILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF 357
Query: 366 DEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPV 425
           ++DP EY+R+  +   D  + R A  DF+ EL  K        F+  + G   +Y   P 
Sbjct: 358 EDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDP- 415
Query: 426 EYKPYRQKDGALLAIGALC 444
             K ++ KD  +    AL 
Sbjct: 416 -SKNWKFKDLYIYLFTALA 433
>pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1033
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-139
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 8e-45
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 7e-41
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 5e-30
2x19_B963 Importin-13; nuclear transport, protein transport; 8e-30
1qgr_A876 Protein (importin beta subunit); transport recepto 4e-29
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 5e-25
2x1g_F971 Cadmus; transport protein, developmental protein, 3e-19
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 5e-19
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 1e-16
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 8e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-05
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
 Score =  441 bits (1134), Expect = e-139
 Identities = 156/950 (16%), Positives = 346/950 (36%), Gaps = 107/950 (11%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPS-------LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETE--HASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNL--LQPRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +   +  ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+  +   D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLE-GSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALC------DKLKQTEPYKSELERML 461
            F+  + G   +Y   P +   ++ KD  +    AL       +    +      +    
Sbjct: 399 IFLAHMKGFVDQYMSDPSK--NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456

Query: 462 VQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRV 518
            + + P+ +S   P   LR  A      +   N   +    + +  + + L+  E  V  
Sbjct: 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFR--NQLTKAQLIELMPILATFLQTDEYVVYT 514

Query: 519 DSVFALRSFVE---------ACRDLNEIRPILPQLLDEFFKLMNEV--------ENEDLV 561
            +   +   +                +I      LL     L+ +         ENE L+
Sbjct: 515 YAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLM 574

Query: 562 FTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTI 621
            ++  ++    + + P    L                  ++  +P          +I  I
Sbjct: 575 RSIFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAI 626

Query: 622 LESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWP 681
           L            +  +++P    + + D QE    V +I++++   S TI   +  L  
Sbjct: 627 LNYTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQ 684

Query: 682 LMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDG 741
            ++           P +   L ++I   ++ F           +  +   ++A K  E  
Sbjct: 685 PLLAPNVWELKGNIPAVTRLLKSFIKTDSSIF------PDLVPVLGIFQRLIASKAYEVH 738

Query: 742 DIEPAPKLIEVVFQNCKGQ-VDHWVEPYLRITVERLRRAEK-SYLKCLLVQVIADALYYN 799
                  L+E +        +  +++    + ++RL+ ++   Y+K L V     +    
Sbjct: 739 ----GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794

Query: 800 SSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALT 856
           S   +  + ++  G+  +++ N     L                D+K+  +G+ ++  + 
Sbjct: 795 SDFLIHFIDEVQDGLFQQIWGNFIITTLP---------TIGNLLDRKIALIGVLNM--VI 843

Query: 857 ADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEE---AEDDDDMDGFQT 903
             Q        +  +T++ ++      + A    +    ++ +++  F +
Sbjct: 844 NGQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDLDNLEEISTFGS 893
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1033
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-133
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 8e-38
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 7e-37
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 7e-36
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-32
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.003
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  423 bits (1088), Expect = e-133
 Identities = 155/1037 (14%), Positives = 348/1037 (33%), Gaps = 135/1037 (13%)

Query: 2   DLPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIH 61
           DL ++A  L    S      K +E +L Q +      + LL +I   N  LS R   ++ 
Sbjct: 3   DLETVAKFLAE--SVIASTAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALF 60

Query: 62  FKNFIAKNWAPHEPNEQQKISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYP 121
           FKNFI + W     N    +   + ++++  I+  +  +P  L+VQ+GE + +I  +D+P
Sbjct: 61  FKNFIKRKWVDENGN--HLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP 118

Query: 122 EQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKY--EFKSDEERTPVYRIVEETFHHL 176
           ++WP LL  +   L +       G L V   + +++   F+SDE    +  +++      
Sbjct: 119 DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPF 178

Query: 177 LNIFNRLVQIVNPSL-------EVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMILF 229
           LN+   + + +  +         + D++ ++ K+++     +IP+   D       M +F
Sbjct: 179 LNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFED--NIQVGMGIF 236

Query: 230 LNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMF 289
              L    P   +P + E   +    KVK     ++    TR+ D               
Sbjct: 237 HKYLSYSNPLLEDPDETEH--ASVLIKVKSSIQELVQLYTTRYED--------------V 280

Query: 290 QKNYAGKILECHLNLLNRIRVGGYLPDRVTNLILQYLSNSISKNSMYNLLQ--PRLDVLL 347
                 + ++   NLL  I       D + +  L +L+        + +      ++ + 
Sbjct: 281 FGPMINEFIQITWNLLTSIS-NQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339

Query: 348 FEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQ 407
            +I+ P +   + D +L+++DP EY+R+      D  + R A  DF+ EL  K       
Sbjct: 340 EQIILPNVTLREEDVELFEDDPIEYIRR-DLEGSDTDTRRRACTDFLKELKEKNEVLVTN 398

Query: 408 KFIQFIVGIFKRYDETPVEYKPYR----QKDGALLAIGALCDKLKQTEPYKSELERMLVQ 463
            F+  + G   +Y   P +   ++        AL   G + +    +      +     +
Sbjct: 399 IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK 458

Query: 464 HVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDS 520
            + P+ +S   P   LR  A      + +          + +  + + L+  E  V   +
Sbjct: 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATFLQTDEYVVYTYA 516

Query: 521 VFALRSFVEACRD---------LNEIRPILPQLLDEFFKLMNEV--------ENEDLVFT 563
              +   +                +I      LL     L+ +         ENE L+ +
Sbjct: 517 AITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS 576

Query: 564 LETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEADEDADDPGALAAVGCLRAISTILE 623
           +  ++    + + P    L                  ++  +P          +I  IL 
Sbjct: 577 IFRVLQTSEDSIQPLFPQLLAQFIEIVT------IMAKNPSNP--RFTHYTFESIGAILN 628

Query: 624 SVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLM 683
                      +  +++P    + + D QE    V +I++++   S TI   +  L   +
Sbjct: 629 YTQ--RQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPL 686

Query: 684 MEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDI 743
           +           P +   L ++I   ++ F           +  +   ++A K  E    
Sbjct: 687 LAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYEVH-- 738

Query: 744 EPAPKLIEVVFQNCKGQV-DHWVEPYLRITVERLRRAEK-SYLKCLLVQVIADALYYNSS 801
                L+E +           +++    + ++RL+ ++   Y+K L V     +    S 
Sbjct: 739 --GFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796

Query: 802 LTLSILHKLGVATEVFNLWFQMLQQVKKNGLRVNFKREHDKKVCCLGLTSLLALTADQLP 861
             +  + ++        L+ Q+        L        D+K+  +G+ +++        
Sbjct: 797 FLIHFIDEV-----QDGLFQQIWGNFIITTLP-TIGNLLDRKIALIGVLNMVINGQFFQS 850

Query: 862 GEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSDKEMGVDA 921
                 +  +T++ +                     ++   +    +  +       ++ 
Sbjct: 851 --KYPTLISSTMNSI---------------------IETASSQSIANLKNDYVDLDNLEE 887

Query: 922 EDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKV 981
                +   +L  ++                       + L          ++  + +  
Sbjct: 888 ISTFGSHFSKLVSISE-------------------KPFDPLPEIDVNNGVRLYVAEALNK 928

Query: 982 MQASDPLR-FQNLTQTL 997
             A         +   L
Sbjct: 929 YNAISGNTFLNTILPQL 945
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1033
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.91
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.88
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.87
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.83
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.78
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.72
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.27
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.14
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.7
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.61
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.45
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.43
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.36
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.48
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.36
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.13
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.66
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 95.22
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.97
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 94.45
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.75
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 88.97
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 82.05
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=0  Score=743.17  Aligned_cols=911  Identities=17%  Similarity=0.241  Sum_probs=714.6

Q ss_pred             CC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99-47899999982399988899999999972079871999999987127680246999999998784117988888689
Q 001675            1 MD-LPSLALILQGALSPNPEERKAAEHSLNQFQYTPQHLVRLLQIIVDNNCDLSVRQVASIHFKNFIAKNWAPHEPNEQQ   79 (1033)
Q Consensus         1 Md-~~~L~~~L~~tls~d~~~r~~AE~~L~~~~~~p~f~~~Ll~i~~~~~~~~~vRq~Aai~lKn~i~~~W~~~~~~~~~   79 (1033)
                      |+ +++|.++|.++++|+  +||+||++|++++++|||+.+|++|+.+++.+.++|++|+|+|||.|+++|+...+  ++
T Consensus         1 ~~d~~~l~~ll~~s~~~~--~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~--~~   76 (959)
T d1wa5c_           1 MSDLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG--NH   76 (959)
T ss_dssp             CCHHHHHHHHHHHTTSGG--GHHHHHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS--CB
T ss_pred             CCCHHHHHHHHHHCCCHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CC
T ss_conf             971999999998789968--99999999999770998999999998358999999999999999999985564344--57


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHCC
Q ss_conf             99966799999999989712895889999999999997317999625799999972034---498899999999997046
Q 001675           80 KISQVDKDMVRDHILVFVAQVPPLLRVQLGECLKTIIHADYPEQWPHLLDWVKHNLQDQ---QVYGALFVLRILSRKYEF  156 (1033)
Q Consensus        80 ~i~~~~k~~ir~~ll~~l~~~~~~ir~~l~~~i~~Ia~~d~P~~Wp~Ll~~l~~~l~s~---~~~~~L~~L~~i~k~~~~  156 (1033)
                      .+|+++|+.||+.+++++.++++.||++++.+++.|+++|||++||+|++.+.+.++++   .++++|.+++.++|.+++
T Consensus        77 ~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~  156 (959)
T d1wa5c_          77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRP  156 (959)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTT
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999837969999999999999998768402579999999985799999999999999999999876


Q ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCC---CCC----HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             78--54622799999999899999999984022---997----2399999999999687665138712279233889999
Q 001675          157 KS--DEERTPVYRIVEETFHHLLNIFNRLVQIV---NPS----LEVADLIKLICKIFWSSIYLEIPKQLLDPNVFNAWMI  227 (1033)
Q Consensus       157 ~~--~~~~~~l~~i~~~~~p~L~~l~~~~~~~~---~~~----~~~~~~~~~~lki~~~~~~~~lp~~~~~~~~l~~w~~  227 (1033)
                      ..  ++.+..+..+...++|.+.+++.......   ..+    .......+.++|+|++++..+.+..+.  +.+..|+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  234 (959)
T d1wa5c_         157 LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE--DNIQVGMG  234 (959)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH--HTHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHH
T ss_conf             5132547767999999999999999999999976352419999999999999999999977520469999--99999999


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99997258999999999946642102268999999999999998489899984349999999997399999999999996
Q 001675          228 LFLNVLERPVPSEGEPADPEQRKSWGWWKVKKWTVHILNRLYTRFGDLKLQNPENRAFAQMFQKNYAGKILECHLNLLNR  307 (1033)
Q Consensus       228 ~~~~~l~~~~p~~~~~~d~~~~~~~~~~k~kk~~~~~l~~l~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~l~~  307 (1033)
                      .|..++....+...  .+.+......++++|+++++++..+..+|++              +..++++.+++.+++.+..
T Consensus       235 ~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~  298 (959)
T d1wa5c_         235 IFHKYLSYSNPLLE--DPDETEHASVLIKVKSSIQELVQLYTTRYED--------------VFGPMINEFIQITWNLLTS  298 (959)
T ss_dssp             HHHHHHSCCSCCCC--------CCCHHHHHHHHHHHHHHHHHHHCHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_conf             99999800553135--8014555028999999999999999998589--------------8999999999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCCC
Q ss_conf             41886358899999999998212770336650--4219998999864126679213765510989999881574344578
Q 001675          308 IRVGGYLPDRVTNLILQYLSNSISKNSMYNLL--QPRLDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYS  385 (1033)
Q Consensus       308 ~~~~~~~~~~~~~~~l~fl~~~v~~~~~~~~~--~~~l~~li~~ii~p~l~l~~~d~e~we~Dp~efi~~~~d~~~d~~s  385 (1033)
                      .... +..+.++..+++|+..+++.+.+++.+  .+++..++..+++|+++++++|.+.|++||++|++++.+. .+.++
T Consensus       299 ~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~-~~~~~  376 (959)
T d1wa5c_         299 ISNQ-PKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEG-SDTDT  376 (959)
T ss_dssp             CCSC-TTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC-----C
T ss_pred             HHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHH-CCCCC
T ss_conf             8335-552899999999999998517899887204678889999999885678778987750638777877400-00021


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHH
Q ss_conf             888999999999985060109999999999631156898788763568589999999877511------28962467999
Q 001675          386 PRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLK------QTEPYKSELER  459 (1033)
Q Consensus       386 ~R~aa~~ll~~l~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~keaal~~lg~la~~l~------~~~~~~~~le~  459 (1033)
                      +|.+|..++..+++++++.+.+.+.+++.+.++++...+.  .+|+.+++++.++|+++....      .......++.+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  454 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPS--KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD  454 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             7789999999999753411268899999999975146876--21677889999999998631266665521230434999


Q ss_pred             HHHHHHCCCCCC---CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC----
Q ss_conf             998830226789---8651069999999961105668944899999999842899997358979999999997122----
Q 001675          460 MLVQHVFPEFSS---PVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACR----  532 (1033)
Q Consensus       460 ~l~~~v~p~l~~---~~~~lr~ra~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~d~~~~Vr~~A~~al~~~~~~~~----  532 (1033)
                      ++.+++.|.+..   +++++|+|+||++|+|++..  .++.+..+++.++++|++++.+||.+||.|+..+++...    
T Consensus       455 ~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~--~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~  532 (959)
T d1wa5c_         455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS  532 (959)
T ss_dssp             HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999973688750999999999998777412--6788999999999872799615899999999999986600332


Q ss_pred             -----CCCHHHCCHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             -----320111002999999999852111--------0149999999999604565443898999999999999840237
Q 001675          533 -----DLNEIRPILPQLLDEFFKLMNEVE--------NEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWRCMNTAEA  599 (1033)
Q Consensus       533 -----~~~~l~p~l~~il~~L~~ll~~~~--------~e~l~~~l~~iv~~~~~~i~p~~~~l~~~L~~~~~~~~~~~~~  599 (1033)
                           ..+.+.|+++++++.++..+.+..        .+.+..++..++..+++.+.||+..+++.|.+.+.+..+    
T Consensus       533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~----  608 (959)
T d1wa5c_         533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAK----  608 (959)
T ss_dssp             CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTT----
T ss_pred             CHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_conf             0010328877756999999999999861220256788999999999999987988888999999999999999856----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999836889999999999999820588478998776599999997135803579999999999660399999867887
Q 001675          600 DEDADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSL  679 (1033)
Q Consensus       600 d~~~~~~~~~~~~~~l~~i~~ii~~~~~~~~~~~~l~~~~~p~i~~il~~~~~~~~~~~l~ll~~l~~~~~~is~~l~~l  679 (1033)
                      ++    .+....+.++++++.++...  +++.+..+++.++|++..+++++..++.++++++|..++++.+.+++.+|.+
T Consensus       609 ~~----~~~~~~~~~~e~l~~l~~~~--~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l  682 (959)
T d1wa5c_         609 NP----SNPRFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPL  682 (959)
T ss_dssp             SC----CCHHHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGG
T ss_pred             CC----CCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             84----23678999999999999842--8135999999999999999843316478999999999987477866889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999996555852452244321124312721223668860599999999997617899987557354799999997256
Q 001675          680 WPLMMEALADWAIDFFPNILVPLDNYISRGTAHFLTCKEPDYQQSLWSMVSSIMADKNLEDGDIEPAPKLIEVVFQNCKG  759 (1033)
Q Consensus       680 ~~~l~~~~~~~~~~~l~~~~~~L~~~i~~~~~~~l~~~~~~~~~~il~~~~~~l~~~~~~~~~~~~a~~ll~~ii~~~~~  759 (1033)
                      ++.++........++++.+..++++|+.++++.+..      ...+++++.+++..+..+    ..++.++..+++++++
T Consensus       683 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~l~~~~~~l~~~~~~----~~~~~ll~~ii~~~~~  752 (959)
T d1wa5c_         683 AQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD------LVPVLGIFQRLIASKAYE----VHGFDLLEHIMLLIDM  752 (959)
T ss_dssp             HHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC------SHHHHHHHHHHHTCTTTH----HHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC------HHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHCCH
T ss_conf             999863788877611899999999999728786446------287999999987798306----8999999999997851


Q ss_pred             C-CHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCHHHHHHHHHHH--CCHHHHH-HHHHHHHHHHHHHCCCC
Q ss_conf             7-301018899999999973234489999999-99997600969999999960--8449999-99999899988505444
Q 001675          760 Q-VDHWVEPYLRITVERLRRAEKSYLKCLLVQ-VIADALYYNSSLTLSILHKL--GVATEVF-NLWFQMLQQVKKNGLRV  834 (1033)
Q Consensus       760 ~-~~~~l~~il~~~l~~l~~~~~~~~~~~~l~-v~~~~~~~~p~~~~~~L~~~--~~~~~~~-~~w~~~~~~~~~~~~~~  834 (1033)
                      . +.++++.++..++.+++..+.+.+...++. +...+++++|+.+++++++.  +....++ ..|+++.+         
T Consensus       753 ~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------  823 (959)
T d1wa5c_         753 NRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLP---------  823 (959)
T ss_dssp             HHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGG---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCC---------
T ss_conf             44676899999999999870460899999999999999871999999999984321589999999973141---------


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             43200245888999888740255899923587899999999999999999997200016887768989999888999999
Q 001675          835 NFKREHDKKVCCLGLTSLLALTADQLPGEALGRVFRATLDLLVAYKEQVAEAAKDEEAEDDDDMDGFQTDDEDDDGDGSD  914 (1033)
Q Consensus       835 ~~~~~~d~Kl~~lal~~ll~~~~~~l~~~~~~~i~~~~~~ll~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~d~~~~~  914 (1033)
                      ++.+.++||++++|+++|++.++..++  .+..++..++..+.   +...   ....   ++..++..    +.+++  +
T Consensus       824 ~~~~~~~~k~~~l~l~~ll~~~~~~~~--~~~~~~~~~~~~l~---~~~~---~~~~---~~~~~~~~----~~~~~--~  886 (959)
T d1wa5c_         824 TIGNLLDRKIALIGVLNMVINGQFFQS--KYPTLISSTMNSII---ETAS---SQSI---ANLKNDYV----DLDNL--E  886 (959)
T ss_dssp             GCCSHHHHHHHHHHHHHHHHSCHHHHH--HCGGGHHHHHHHHH---HHHH---SCST---TCSCCSCC-----------C
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHH---HHHH---CCCC---CCCCCCCH----HCCCC--C
T ss_conf             039999999999999998658861425--79999999999999---8762---6543---32013201----11445--6


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCH-HHHHHH
Q ss_conf             7888998777614689999999998423999999999889988877788989888367999999999973090-889998
Q 001675          915 KEMGVDAEDGDEADSIRLQKLAAQARAFRPHDEDDDDSDDDFSDDEELQSPIDEVDPFVFFVDTIKVMQASDP-LRFQNL  993 (1033)
Q Consensus       915 ~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~e~~~~~~pl~~vd~~~~~~~~~~~~~~~~~-~~~~~l  993 (1033)
                      +        .++++.. +..+..               .. ..+.+-+.+|.+++|+++||+++++++++++| ..|+.+
T Consensus       887 ~--------~~~~~~~-~~~~~~---------------~~-~~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~  941 (959)
T d1wa5c_         887 E--------ISTFGSH-FSKLVS---------------IS-EKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTI  941 (959)
T ss_dssp             C--------CCCTTCC-CCCCGG---------------GC-CCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             C--------CCCCCHH-HHHHHH---------------HH-HCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf             4--------2231202-567998---------------66-343697445776522999999999999875977899999


Q ss_pred             HCCCCHHHHHHHHHHHH
Q ss_conf             63799999999999999
Q 001675          994 TQTLEFQYQALANGVAQ 1010 (1033)
Q Consensus       994 ~~~l~~~~~~~l~~~~~ 1010 (1033)
                      .++++++.++.|++++.
T Consensus       942 ~~~l~~~~~~~L~~~l~  958 (959)
T d1wa5c_         942 LPQLTQENQVKLNQLLV  958 (959)
T ss_dssp             GGGSCHHHHHHHHHHHC
T ss_pred             HHHCCHHHHHHHHHHHC
T ss_conf             97399999999999856
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure