Citrus Sinensis ID: 001680

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030--
MRHLFSSRSSFTKLVEETESRYLTSMAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV
ccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccEEEEEEcccccccHHHHccccEEEEEcccccccccccccccHHHHHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEcEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcHHHHHHHHHcccccccHHHHHcccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccEEEEEEccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcc
ccccccccccccccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEccccccccccccccccccccccccccccccccccccHccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEcccccccHHHHHHHHHHHccccccccccccccccHHHHccHHHHHHcccccccccccccHccccccHHHHHHHHccccccccccccEEEccHHHHHHHHHHHHHHccccccEEEEEEEcccccccHHHHHcccEEEEEHHHEHHHcccccccccccccccccccccccccccccccccccccccHccccccEcccccccccccccHHHEHEEEEEEHHHHHccccHHHHHHHHHHHHHccEEEEcccHHHccHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHcccccccEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHccccccccccccHHHHHHccHHHHHHHHHHHcccccccccccccccccEEcccccHHHHHHHHHHHcccccccccccccccccHHHccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHccccccHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccccEEEEEEEEcccccEEHHHccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHcc
mrhlfssrsSFTKLVEETESRYLTSMaaispidisssdsdldigesdtsetrqsgnvrilppwatKAAVnartgyggqsqkvpsfersyasngsssnansysqeklqmlpgfsddhqmsngqaddshylsgnknvgqlqtvnprianvasadyekiSSQQALKrtlpafpqphslntkskssvenmnssqirdtfgnayhlagpstvnskgyirdyyvkkndddimmyegnrilpsslmhgksvsmtqfggpsdlayrsgsaderavggdeRLIYQAALEdlnqpkveatlpdgllSVNLLKHQKIALAWMLQKETRSLhclggiladdqglgkTISIIALIQMQRSlqsksktevlgnqktealnldddddngnagldkvketgesddikpvpevststrsfsrrrpaagtlvvcpASVLRQWARELEDKVPDKAALSVLIYhggsrtkdpvelaKYDVVLTTYSIVtnevpkqpsvdeeeadekngetyglssefsvnkkrKKISNvskrgkkgkkgnvnssidygcgplakvgwFRVVLDEAQTIKNHRTQVARACCSLRAkrrwclsgtpiqnsIDDLYSYFrflkydpyavYKSFYstikipisrnslhGYKKLQAVLRAIMLRRtkgtfidgqpiinlppktisltkvdfskEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQAcdhpllvkeydfdsvgkISGEMAKRLPRDMLIDLLSRLetssaiccvcsdppedsvvtmCGHVFCYQcaseyitgddnmcpaprckeqlgadvvfskttlkncvsddgggsptdspfadksgildneyiSSKIRTVLDILHTQCELNTKCSIVEIHdlagsngssavhskspiegpiksIVFSQWTRMLDLVENSLNQHCIQyrrldgtmslpardravkdfntDREITVMLMSLKAGNLGLNMVAASHVILLdlwwnpttedqavdrahrigqtrpvtvtrltIRDTVEDRILKLQDDKRKMVASAfgedqgggtasrltVEDLRYLFMV
mrhlfssrssftKLVEETESRYLTSMAAispidisssdsdLDIGEsdtsetrqsgnvrilppwATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTlpafpqphslntkskssvENMNSSQIRDTFGNAYHlagpstvnskgyIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTealnldddddngNAGLDkvketgesddikpvpevststrsfsrrrpaagtlvvcpaSVLRQWARELEDKVPDKAALSVLIyhggsrtkdpveLAKYDVVLTTYSIvtnevpkqpsvdeeeadekngetyglssefsvnkkrkkisnvskrgkkgkkgnvnssidygcGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLrakrrwclsgtpiqnsIDDLYSYFRFLKYDPYAVYKSFYSTIKipisrnslhgyKKLQAVLRAIMLRRTKgtfidgqpiinlppktisltKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNcvsddgggsptdspfadksgiLDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGssavhskspiegpIKSIVFSQWTRMLDLVENSLNQHCIQYrrldgtmslpaRDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQavdrahrigqtrpvtvtrltirdtvedrilklqddkRKMVAsafgedqgggtasrltvedlrylfmv
MRHLFSSRSSFTKLVEETESRYLTSMAAispidisssdsdldigesdTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERsyasngsssnansysQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEalnldddddngnagldKVKETGESDDIKPVPEVststrsfsrrrPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKIsnvskrgkkgkkgnvnssIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV
**********************************************************ILPPWATKAA*****************************************************************************************************************************TFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRIL************************************ERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQM*****************************************************************AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTN*****************************************************SIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCV*****************GILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAG**************GPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQ***********************TVEDLRYLF**
**********************************************************************************************************************************************************************************************************************************************************************************************************NLLKHQKIALAWMLQ*****************GLGKTISIIALIQMQRSLQSKSKTEVLGNQ***************AGLD******************************AGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQP*************************************************DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTK**********NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFK******TV*QNYANILLMLLRLRQACDHPLLV********************RDMLIDLL***ET*SAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCV********************************************************S***********IEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRK**********************LRYLFMV
MRHLFSSRSSFTKLVEETESRYLTSMAAISPIDISSS****************SGNVRILPPWATKAAVNAR*****************************SQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLN***********SSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAY*********VGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKE***********************RPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEV**********************************************GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGS*********SPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV
*******************************************************NVRILPPWATKAAVNART*YGGQSQK*******************************************************************************************************************************************NDDDIMMYEGNRILP**********************************DERLIYQAALEDLNQ**VEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRS********VLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPK******************************************KKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDF****KISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFS********************************ISSKIRTVLDILHTQCELN*KCSIV****LAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQG*G*ASRLTVEDLRYLFMV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRHLFSSRSSFTKLVEETESRYLTSMAAISPIDISSSDSDLDIGESDTSETRQSGNVRILPPWATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSYSQEKLQMLPGFSDDHQMSNGQADDSHYLSGNKNVGQLQTVNPRIANVASADYEKISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1032 2.2.26 [Sep-21-2011]
Q9FNI61029 Putative SWI/SNF-related no no 0.570 0.572 0.326 4e-98
O601771040 Uncharacterized ATP-depen yes no 0.616 0.611 0.326 7e-98
Q9FIY71277 Putative SWI/SNF-related no no 0.558 0.451 0.332 5e-96
O13762897 Uncharacterized ATP-depen no no 0.610 0.702 0.318 2e-90
P31244790 DNA repair protein RAD16 yes no 0.496 0.648 0.324 1e-84
Q9FF61881 Putative SWI/SNF-related no no 0.636 0.745 0.299 2e-84
Q10332830 Uncharacterized ATP-depen no no 0.556 0.691 0.305 5e-84
Q145271009 Helicase-like transcripti yes no 0.501 0.513 0.318 3e-83
Q952161005 Helicase-like transcripti yes no 0.505 0.519 0.308 7e-83
P366071133 DNA repair protein rad5 O no no 0.563 0.513 0.302 2e-81
>sp|Q9FNI6|SM3L2_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 OS=Arabidopsis thaliana GN=At5g22750 PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (923), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 240/734 (32%), Positives = 365/734 (49%), Gaps = 145/734 (19%)

Query: 323  GGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVK 382
            GGILAD  GLGKT+  I+L+ +  S ++ S   +  N +                 DKV 
Sbjct: 414  GGILADAMGLGKTVMTISLL-LAHSWKAASTGFLCPNYEG----------------DKVI 456

Query: 383  ETGESDDIKPVPEVSTSTRSFSRRR-------PAAGTLVVCPASVLRQWARELEDKVPDK 435
             +   DD+   P  +T    F +R           G L+VCP ++L QW  E+E      
Sbjct: 457  SSS-VDDLTSPPVKATKFLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHA-KP 514

Query: 436  AALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSS 495
             +LSV +++G SR KD   L++ DVV+TTY ++T+E  ++ S D E              
Sbjct: 515  GSLSVYVHYGQSRPKDAKLLSQSDVVITTYGVLTSEFSQENSADHE-------------- 560

Query: 496  EFSVNKKRKKISNVSKRGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQV 555
                                                +  V WFR+VLDEA TIKN ++Q+
Sbjct: 561  -----------------------------------GIYAVRWFRIVLDEAHTIKNSKSQI 585

Query: 556  ARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHG 615
            + A  +L A RRWCL+GTPIQN+++DLYS  RFL+ +P+  +  +   ++ P       G
Sbjct: 586  SLAAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERG 645

Query: 616  YKKLQAVLRAIMLRRTKG-TFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKK 674
             K +Q++L+ IMLRRTK  T  +G+PI+ LPP    +   + S+ E  FY  L   S  K
Sbjct: 646  LKLVQSILKPIMLRRTKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVK 705

Query: 675  FKAFADAGTVNQNYANILLMLLRLRQACDHPLLV------KEY-DFDSV------GKISG 721
            F  F + G V  NYA+IL +LLRLRQ CDHP LV       EY D + +      GK SG
Sbjct: 706  FDQFVEQGKVLHNYASILELLLRLRQCCDHPFLVMSRGDTAEYSDLNKLSKRFLSGKSSG 765

Query: 722  --EMAKRLPRDMLI-DLLSRL-ETSSAICCVCSDPPEDSVVTMCGHVFCYQCA-SEYITG 776
                 K +P +  + +++  L +     C +C +  ED+V+T C H  C +C  + +   
Sbjct: 766  LEREGKDVPSEAFVQEVVEELRKGEQGECPICLEALEDAVLTPCAHRLCRECLLASWRNS 825

Query: 777  DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRT 836
               +CP   C+  +    + +              +PT+S F  +  +  N   SSKI  
Sbjct: 826  TSGLCPV--CRNTVSKQELIT--------------APTESRF--QVDVEKNWVESSKITA 867

Query: 837  VLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQWTRMLDLVENS 896
            +L+                  +L G   S +           KSI+FSQWT  LDL++  
Sbjct: 868  LLE------------------ELEGLRSSGS-----------KSILFSQWTAFLDLLQIP 898

Query: 897  LNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDL 956
            L+++   + RLDGT+S   R++ +K+F+ D  I V+LMSLKAG +G+N+ AAS+  ++D 
Sbjct: 899  LSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDP 958

Query: 957  WWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGG 1016
            WWNP  E+QAV R HRIGQT+ V + R  ++ TVE+R+  +Q  K++M++ A  + +   
Sbjct: 959  WWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQE--- 1015

Query: 1017 TASRLTVEDLRYLF 1030
                  +E+L+ LF
Sbjct: 1016 -VRSARIEELKMLF 1028
Possesses intrinsic ATP-dependent nucleosome-remodeling activity. This activity may be required for DNA repair.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|O60177|YG42_SCHPO Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC23E6.02 PE=3 SV=1 Back     alignment and function description
>sp|Q9FIY7|SM3L3_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1 Back     alignment and function description
>sp|O13762|YF2C_SCHPO Uncharacterized ATP-dependent helicase C17A2.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17A2.12 PE=3 SV=1 Back     alignment and function description
>sp|P31244|RAD16_YEAST DNA repair protein RAD16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAD16 PE=1 SV=1 Back     alignment and function description
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1 Back     alignment and function description
>sp|Q10332|YBMA_SCHPO Uncharacterized ATP-dependent helicase C582.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC582.10c PE=1 SV=1 Back     alignment and function description
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 Back     alignment and function description
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 Back     alignment and function description
>sp|P36607|RAD5_SCHPO DNA repair protein rad5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1032
3594841391013 PREDICTED: uncharacterized ATP-dependent 0.948 0.966 0.707 0.0
255544141993 DNA repair helicase rad5,16, putative [R 0.949 0.986 0.687 0.0
224095220923 chromatin remodeling complex subunit [Po 0.878 0.982 0.725 0.0
3565741011027 PREDICTED: ATP-dependent helicase ULS1-l 0.949 0.954 0.644 0.0
356534462975 PREDICTED: putative SWI/SNF-related matr 0.916 0.970 0.662 0.0
4494649541015 PREDICTED: uncharacterized ATP-dependent 0.944 0.960 0.631 0.0
297742732907 unnamed protein product [Vitis vinifera] 0.862 0.981 0.612 0.0
18403061981 SNF2 and helicase domain-containing prot 0.903 0.950 0.587 0.0
297847386980 SNF2 domain-containing protein [Arabidop 0.897 0.944 0.582 0.0
2978306801046 SNF2 domain-containing protein [Arabidop 0.848 0.837 0.596 0.0
>gi|359484139|ref|XP_002267403.2| PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1361 bits (3523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 709/1002 (70%), Positives = 819/1002 (81%), Gaps = 23/1002 (2%)

Query: 45   ESDTSETRQS---GNVRILPPWATKAAVNARTGYGGQSQKVPSFERSYASNGSSSNANSY 101
            E+DTS   +S    N RILPPW + +  N+++   G  QKVPS +R+ ASNGSSSN   Y
Sbjct: 21   ETDTSPVGESVAFANSRILPPWPSTSGTNSKSTSHGHFQKVPSPKRASASNGSSSNFYHY 80

Query: 102  SQEKLQMLPGFSDDHQMSNG---QADDSHYLSGNKNV----GQLQTVNPRIANVASADYE 154
               K+QM P F DD + SN    +  D +Y + N ++       Q +N   A++  ADYE
Sbjct: 81   P-PKIQMHPSFDDDIRASNRHNFREADFNYSTENGDMLDVENHQQLINLNKADIFGADYE 139

Query: 155  KISSQQALKRTLPAFPQPHSLNTKSKSSVENMNSSQIRDTFGNAYHLAGPSTVNSKGYIR 214
            K+S Q A++RTLP+  QP + +    ++V N+ SS I D+ G ++H  GP  +N+  Y++
Sbjct: 140  KLS-QPAMRRTLPSTLQPSAPSAGMNNTVGNIGSSHIHDSQGKSFHPVGP-ILNNMNYMK 197

Query: 215  DYYVKKNDDDIMMYE--GNRILPSSLMHGKSVSMTQFGGPSDLAYRSGSADERAVGGDER 272
            +++ + NDD+++MYE  G+RILP SLMHGKSV  TQ+GG S+ AYR G A+E A   DER
Sbjct: 198  EHFGRGNDDEVIMYENSGSRILPPSLMHGKSVPSTQYGGVSESAYRPGVAEEMAANTDER 257

Query: 273  LIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGL 332
            L+YQAAL+DLNQPKVEATLPDGLL+V+LL+HQKIALAWM QKETRSLHCLGGILADDQGL
Sbjct: 258  LVYQAALQDLNQPKVEATLPDGLLTVSLLRHQKIALAWMHQKETRSLHCLGGILADDQGL 317

Query: 333  GKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNA-GLDKVKETGESDDIK 391
            GKT+S+IALIQMQ+SLQSKSK+E L N  TEALNLDDDDDN NA G DK K+T E+ D K
Sbjct: 318  GKTVSMIALIQMQKSLQSKSKSEELHNHSTEALNLDDDDDNANAAGSDKGKQTEETSDSK 377

Query: 392  PVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKD 451
            P+ EVS S   F RRRPAAGTLVVCPASVLRQWAREL++KV ++A LSV +YHGGSRTKD
Sbjct: 378  PISEVSASLPEFRRRRPAAGTLVVCPASVLRQWARELDEKVSEEAKLSVCLYHGGSRTKD 437

Query: 452  PVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSK 511
            PVELAKYDVVLTTYSIVTNEVPKQP VD++E DE+NGE YGLSSEFSVNKKRKK SNVSK
Sbjct: 438  PVELAKYDVVLTTYSIVTNEVPKQPLVDDDEGDERNGEKYGLSSEFSVNKKRKKPSNVSK 497

Query: 512  RGKKGKKGNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLS 571
            RGKKG+KG  +SSIDY CGPLA+VGWFRV+LDEAQTIKNHRTQVARACCSLRAKRRWCLS
Sbjct: 498  RGKKGRKGIDSSSIDYDCGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLS 557

Query: 572  GTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRT 631
            GTPIQN+IDDLYSYFRFLKYDPYAVYKSFY+TIK+PISRNS+HGYKKLQAVLRAIMLRRT
Sbjct: 558  GTPIQNAIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSVHGYKKLQAVLRAIMLRRT 617

Query: 632  KGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANI 691
            KGT IDG PIINLPPKTI L+KVDFS EE AFY KLE+DS  +FK +A AGTVNQNYANI
Sbjct: 618  KGTLIDGTPIINLPPKTICLSKVDFSSEERAFYSKLEADSRSQFKEYAAAGTVNQNYANI 677

Query: 692  LLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLLSRLETSSAICCVCSD 751
            LLMLLRLRQACDHPLLVK Y+ DS+ K+S EMAK+LP D+LI+LL  LET SAIC VC+D
Sbjct: 678  LLMLLRLRQACDHPLLVKGYNTDSIRKVSSEMAKKLPSDILINLLDILET-SAICRVCND 736

Query: 752  PPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDGGG 811
            PPED+VVTMCGHVFCYQC SEY+TGDDN CPA  CKEQLGADVVFSK TL +C+SD+  G
Sbjct: 737  PPEDAVVTMCGHVFCYQCVSEYLTGDDNTCPALECKEQLGADVVFSKATLISCISDELDG 796

Query: 812  SPTDSP-FADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHS 870
            S ++S   A+KS  L NEY SSKIR  L+IL + C+L +  S  + H   G NGS   +S
Sbjct: 797  SLSNSSQSAEKSINLQNEYSSSKIRAALEILQSHCKLTSPDS--DPHSSMGCNGS---YS 851

Query: 871  KSPIEGPIKSIVFSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREIT 930
                EGPIK+IVFSQWT MLDLVE S+N  CIQYRRLDGTMSL +RDRAVKDFNTD E+T
Sbjct: 852  NPETEGPIKAIVFSQWTSMLDLVEMSMNHSCIQYRRLDGTMSLASRDRAVKDFNTDPEVT 911

Query: 931  VMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTV 990
            VMLMSLKAGNLGLNMVAAS VILLDLWWNPTTEDQAVDRAHRIGQTRPVTV+R+TI+DTV
Sbjct: 912  VMLMSLKAGNLGLNMVAASLVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVSRITIKDTV 971

Query: 991  EDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032
            EDRIL LQ+DKRKMVASAFGEDQ GG+A+RLTVEDL+YLFMV
Sbjct: 972  EDRILALQEDKRKMVASAFGEDQTGGSATRLTVEDLKYLFMV 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544141|ref|XP_002513133.1| DNA repair helicase rad5,16, putative [Ricinus communis] gi|223548144|gb|EEF49636.1| DNA repair helicase rad5,16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224095220|ref|XP_002310362.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222853265|gb|EEE90812.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356574101|ref|XP_003555190.1| PREDICTED: ATP-dependent helicase ULS1-like [Glycine max] Back     alignment and taxonomy information
>gi|356534462|ref|XP_003535773.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3-like [Glycine max] Back     alignment and taxonomy information
>gi|449464954|ref|XP_004150194.1| PREDICTED: uncharacterized ATP-dependent helicase C23E6.02-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297742732|emb|CBI35366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18403061|ref|NP_564568.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] gi|14532630|gb|AAK64043.1| putative DNA-binding protein [Arabidopsis thaliana] gi|23296945|gb|AAN13207.1| putative DNA-binding protein [Arabidopsis thaliana] gi|332194424|gb|AEE32545.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847386|ref|XP_002891574.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337416|gb|EFH67833.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297830680|ref|XP_002883222.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329062|gb|EFH59481.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1032
TAIR|locus:2008096981 AT1G50410 [Arabidopsis thalian 0.843 0.886 0.609 2e-278
TAIR|locus:20953601047 AT3G20010 [Arabidopsis thalian 0.605 0.596 0.652 1.5e-267
TAIR|locus:20084701280 EDA16 "embryo sac development 0.761 0.614 0.529 5.3e-208
TAIR|locus:2089318638 AT3G16600 [Arabidopsis thalian 0.099 0.161 0.718 1.7e-153
POMBASE|SPBC23E6.021040 rrp2 "ATP-dependent DNA helica 0.476 0.473 0.357 1.2e-106
ASPGD|ASPL00000301721184 AN5483 [Emericella nidulans (t 0.232 0.202 0.387 3.9e-94
POMBASE|SPAC17A2.12897 rrp1 "ATP-dependent DNA helica 0.262 0.302 0.354 5.1e-86
ZFIN|ZDB-GENE-030131-3306942 hltf "helicase-like transcript 0.253 0.278 0.350 2e-84
TAIR|locus:21583571277 AT5G43530 [Arabidopsis thalian 0.281 0.227 0.342 2.6e-84
TAIR|locus:21625041029 RAD5 [Arabidopsis thaliana (ta 0.168 0.169 0.474 2.7e-84
TAIR|locus:2008096 AT1G50410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2676 (947.1 bits), Expect = 2.0e-278, P = 2.0e-278
 Identities = 563/924 (60%), Positives = 662/924 (71%)

Query:   136 GQLQTVNPRIANVASADYEKISSQQALKRTLP-AFPQPHSLNTKSKSSVENMNSSQIRDT 194
             G    V  RI N++  DYEK SSQQA KRT P  F +P     +      N N+S  R  
Sbjct:    85 GNGSIVTSRIPNISVGDYEKFSSQQAFKRTHPPTFSRP-PFPPRPDIGTSNGNASHFR-- 141

Query:   195 FGNAYHLAGPSTVNSKGYIRDYYVKKNDDDIMMYEGNRILPSSLMHGKSVSMTQFGGPSD 254
              G A+   G   V +                    G RILP S+ HG S S + F G SD
Sbjct:   142 -GGAHDDLGMGRVTN--------------------GTRILPPSVAHGTSASPSHFNGLSD 180

Query:   255 LAYRSGSADERAVGGDERLIYQAALEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQK 314
               +R+G  +ER    DERLIYQAAL++LNQPK E  LP GLLSV L+KHQKIALAWM QK
Sbjct:   181 PMHRNGIGEERNSENDERLIYQAALQELNQPKSEVDLPAGLLSVPLMKHQKIALAWMFQK 240

Query:   315 ETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEXXXXXXXXXXX 374
             ET SLHC+GGILADDQGLGKT+S IALI  Q   ++K K++  GNQ+ E           
Sbjct:   241 ETNSLHCMGGILADDQGLGKTVSTIALILKQMH-EAKLKSKNSGNQEAEALDLDADDESE 299

Query:   375 XXXX---XKVKE-TGESDD--IKPVP--EVXXXXXXXXXXXPAAGTLVVCPASVLRQWAR 426
                     K    +G + D  IK     E            PAAGTL+VCPASV+RQWAR
Sbjct:   300 NAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRPAAGTLIVCPASVVRQWAR 359

Query:   427 ELEDKVPDKAALSVLIYHGGSRTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEK 486
             EL++KV D+A LSVLIYHGG+RTKDP+ELAKYDVV+TTY+IV+NEVPKQP VD++E DEK
Sbjct:   360 ELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAIVSNEVPKQPLVDDDENDEK 419

Query:   487 NGETYGLSSEFSVNKKRKKIXXXXXXXXXXXXXXXXX-XIDYGCGPLAKVGWFRVVLDEA 545
             N E YGL+S FS+NKKRK +                    D   G LAKVGWFRVVLDEA
Sbjct:   420 NSEKYGLASGFSINKKRKNVVGTTKKSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEA 479

Query:   546 QTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVYKSFYSTIK 605
             QTIKNHRTQVARACC LRAKRRWCLSGTPIQN+IDDLYSYFRFLKYDPYAVYKSF   IK
Sbjct:   480 QTIKNHRTQVARACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIK 539

Query:   606 IPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISLTKVDFSKEEWAFYK 665
              PISRNSL GYKKLQAVLRAIMLRRTKGT +DGQPIINLPPKTI+L++VDFS EE +FY 
Sbjct:   540 GPISRNSLQGYKKLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQVDFSVEERSFYV 599

Query:   666 KLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAK 725
             KLESDS  +FKA+A AGT+NQNYANILLMLLRLRQACDHP LVK Y+ DSVGK+S E  K
Sbjct:   600 KLESDSRSQFKAYAAAGTLNQNYANILLMLLRLRQACDHPQLVKRYNSDSVGKVSEEAVK 659

Query:   726 RLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPR 785
             +LP++ L+ LLSRLE SS ICCVC DPPED VVT+CGH+FCYQC S+YITGD++ CPAPR
Sbjct:   660 KLPKEDLVSLLSRLE-SSPICCVCHDPPEDPVVTLCGHIFCYQCVSDYITGDEDTCPAPR 718

Query:   786 CKEQLGADVVFSKTTLKNCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQC 845
             C+EQL  DVVFSK+TL++CV+DD G S ++    DKS   + E+ SSKI+ VLDIL +  
Sbjct:   719 CREQLAHDVVFSKSTLRSCVADDLGCSSSEDNSHDKSVFQNGEFSSSKIKAVLDILQSLS 778

Query:   846 ELNTKCSIVEIHDLAGSNGSS-----------AVHSKSPIE------GPIKSIVFSQWTR 888
                T  S  +   +A S+               +  K+ ++      GPIK+I+FSQWT 
Sbjct:   779 NQGTSNS-TQNGQMASSSQQPNDDDDDDDDDVTIVEKTSLKSTPSNGGPIKTIIFSQWTG 837

Query:   889 MLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAA 948
             MLDLVE SL ++ I++RRLDGTMSL ARDRAVK+F+ D ++ VM+MSLKAGNLGLNM+AA
Sbjct:   838 MLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAA 897

Query:   949 SHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASA 1008
              HVILLDLWWNPTTEDQA+DRAHRIGQTRPVTVTR+TI++TVEDRIL LQ++KRKMVASA
Sbjct:   898 CHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASA 957

Query:  1009 FGEDQGGGTASRLTVEDLRYLFMV 1032
             FGED GG +A+RLTV+DL+YLFMV
Sbjct:   958 FGEDHGGSSATRLTVDDLKYLFMV 981
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
TAIR|locus:2095360 AT3G20010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008470 EDA16 "embryo sac development arrest 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089318 AT3G16600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPBC23E6.02 rrp2 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000030172 AN5483 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPAC17A2.12 rrp1 "ATP-dependent DNA helicase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3306 hltf "helicase-like transcription factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2158357 AT5G43530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162504 RAD5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.12LOW CONFIDENCE prediction!
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CHR934
chromatin remodeling complex subunit (923 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1032
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-50
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 3e-37
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-35
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 3e-22
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 4e-20
smart0049082 smart00490, HELICc, helicase superfamily c-termina 5e-18
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 6e-18
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 7e-12
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-10
smart0018440 smart00184, RING, Ring finger 3e-09
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 5e-09
cd0016245 cd00162, RING, RING-finger (Really Interesting New 1e-08
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-07
pfam1363946 pfam13639, zf-RING_2, Ring finger domain 2e-06
pfam0009740 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING 3e-05
pfam1392049 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI 3e-05
COG5574271 COG5574, PEX10, RING-finger-containing E3 ubiquiti 0.001
PLN03208193 PLN03208, PLN03208, E3 ubiquitin-protein ligase RM 0.002
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information 
 Score =  180 bits (459), Expect = 1e-50
 Identities = 89/313 (28%), Positives = 139/313 (44%), Gaps = 78/313 (24%)

Query: 412 TLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVE------LAKYDVVLTTY 465
           TLVVCP S L  W  E E   P   AL V++YHG  R +  +       L  YDVV+TTY
Sbjct: 51  TLVVCPLSTLHNWLNEFEKWAP---ALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTY 107

Query: 466 SIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSI 525
            ++  +                               +K +S ++K              
Sbjct: 108 EVLRKD-------------------------------KKLLSLLNK-------------- 122

Query: 526 DYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSY 585
                    V W RVVLDEA  +KN ++++ +A   L+ + R  L+GTPIQN++++L++ 
Sbjct: 123 ---------VEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWAL 173

Query: 586 FRFLKYDPYAVYKSFYSTIKIPISRNSLH----------GYKKLQAVLRAIMLRRTKGTF 635
             FL+  P+  +K F     IPI+  + +          G  +L  +L+  +LRRTK   
Sbjct: 174 LNFLRPGPFGSFKVFEEWFNIPIANTADNKNKNLEKGKEGINRLHKLLKPFLLRRTKDDV 233

Query: 636 IDGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLML 695
                   LPPKT  +   + S E+   YKKL +          + G  N   A++L ++
Sbjct: 234 EKS-----LPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVGIASLLNLI 288

Query: 696 LRLRQACDHPLLV 708
           ++LR+ C+HP L 
Sbjct: 289 MQLRKICNHPYLF 301

This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain Back     alignment and domain information
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information
>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1032
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
KOG0387 923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG0386 1157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG1015 1567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
PRK04914 956 ATP-dependent helicase HepA; Validated 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.95
PHA02558501 uvsW UvsW helicase; Provisional 99.95
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.94
KOG1123776 consensus RNA polymerase II transcription initiati 99.88
PTZ00110545 helicase; Provisional 99.88
KOG0354 746 consensus DEAD-box like helicase [General function 99.86
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.85
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.85
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.84
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.84
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.84
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.84
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.84
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 99.83
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 99.83
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 99.81
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.81
PTZ00424401 helicase 45; Provisional 99.81
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.81
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.8
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.78
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 99.78
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.77
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.76
PRK10689 1147 transcription-repair coupling factor; Provisional 99.75
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 99.7
PRK13767 876 ATP-dependent helicase; Provisional 99.69
PRK02362 737 ski2-like helicase; Provisional 99.69
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.68
PRK01172 674 ski2-like helicase; Provisional 99.65
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.63
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.63
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.62
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 99.62
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.62
PRK00254 720 ski2-like helicase; Provisional 99.61
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.6
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.6
PRK09200 790 preprotein translocase subunit SecA; Reviewed 99.59
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.59
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.58
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.56
COG4096 875 HsdR Type I site-specific restriction-modification 99.53
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.53
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 99.52
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.52
PHA02653 675 RNA helicase NPH-II; Provisional 99.52
PRK05580679 primosome assembly protein PriA; Validated 99.5
PRK09401 1176 reverse gyrase; Reviewed 99.49
KOG0348 708 consensus ATP-dependent RNA helicase [RNA processi 99.47
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.47
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.46
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.46
KOG4284 980 consensus DEAD box protein [Transcription] 99.45
smart00487201 DEXDc DEAD-like helicases superfamily. 99.42
KOG0343 758 consensus RNA Helicase [RNA processing and modific 99.41
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.39
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.37
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.37
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 99.36
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.36
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.36
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.35
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.35
smart0049082 HELICc helicase superfamily c-terminal domain. 99.34
COG1205 851 Distinct helicase family with a unique C-terminal 99.32
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.32
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.32
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.31
KOG0339 731 consensus ATP-dependent RNA helicase [RNA processi 99.3
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.28
PRK14701 1638 reverse gyrase; Provisional 99.28
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.27
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 99.27
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.25
KOG0338 691 consensus ATP-dependent RNA helicase [RNA processi 99.25
COG1204766 Superfamily II helicase [General function predicti 99.25
PRK09694 878 helicase Cas3; Provisional 99.2
KOG0345 567 consensus ATP-dependent RNA helicase [RNA processi 99.19
COG1202 830 Superfamily II helicase, archaea-specific [General 99.16
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.16
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.15
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.13
COG4889 1518 Predicted helicase [General function prediction on 99.13
KOG0347 731 consensus RNA helicase [RNA processing and modific 99.1
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.03
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 98.99
PRK05298652 excinuclease ABC subunit B; Provisional 98.95
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 98.94
KOG0334 997 consensus RNA helicase [RNA processing and modific 98.93
KOG0346 569 consensus RNA helicase [RNA processing and modific 98.92
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 98.88
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 98.87
PRK12326 764 preprotein translocase subunit SecA; Reviewed 98.87
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 98.85
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 98.79
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 98.78
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 98.77
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.73
PF11496297 HDA2-3: Class II histone deacetylase complex subun 98.68
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 98.65
COG4098441 comFA Superfamily II DNA/RNA helicase required for 98.63
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 98.62
KOG0351 941 consensus ATP-dependent DNA helicase [Replication, 98.59
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.58
KOG0352 641 consensus ATP-dependent DNA helicase [Replication, 98.53
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 98.53
KOG0337 529 consensus ATP-dependent RNA helicase [RNA processi 98.49
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.48
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.41
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 98.4
KOG0327397 consensus Translation initiation factor 4F, helica 98.36
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.36
PF13871 278 Helicase_C_4: Helicase_C-like 98.35
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 98.15
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.14
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 98.09
KOG0353 695 consensus ATP-dependent DNA helicase [General func 98.05
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 97.86
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.81
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.78
CHL00122 870 secA preprotein translocase subunit SecA; Validate 97.77
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 97.76
PRK15483 986 type III restriction-modification system StyLTI en 97.59
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 97.54
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 97.48
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 97.45
smart0050463 Ubox Modified RING finger domain. Modified RING fi 97.36
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 97.34
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 97.33
KOG0953 700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.31
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 97.28
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.28
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 97.26
COG0610 962 Type I site-specific restriction-modification syst 97.24
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 97.23
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.22
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 97.12
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.1
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.08
KOG0922 674 consensus DEAH-box RNA helicase [RNA processing an 96.99
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 96.94
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 96.75
smart00488289 DEXDc2 DEAD-like helicases superfamily. 96.68
smart00489289 DEXDc3 DEAD-like helicases superfamily. 96.68
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 96.68
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 96.68
KOG0920 924 consensus ATP-dependent RNA helicase A [RNA proces 96.65
PHA02929238 N1R/p28-like protein; Provisional 96.58
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.55
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 96.49
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 96.49
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 96.35
KOG0950 1008 consensus DNA polymerase theta/eta, DEAD-box super 96.23
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 96.16
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 96.04
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 96.04
PHA02926242 zinc finger-like protein; Provisional 95.88
cd0016245 RING RING-finger (Really Interesting New Gene) dom 95.84
COG3587 985 Restriction endonuclease [Defense mechanisms] 95.74
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 95.74
PF1463444 zf-RING_5: zinc-RING finger domain 95.6
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 95.54
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 95.52
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 95.52
PRK10536262 hypothetical protein; Provisional 95.46
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.45
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.42
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 95.35
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 95.35
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 95.24
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 95.2
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 95.15
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 95.12
COG0553 866 HepA Superfamily II DNA/RNA helicases, SNF2 family 94.93
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 94.93
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 94.47
PRK14873665 primosome assembly protein PriA; Provisional 94.39
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 93.71
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 93.29
smart00492141 HELICc3 helicase superfamily c-terminal domain. 93.28
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 93.06
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 93.0
KOG1132 945 consensus Helicase of the DEAD superfamily [Replic 92.91
TIGR00376637 DNA helicase, putative. The gene product may repre 92.75
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 92.74
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 92.66
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 92.61
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 92.54
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 92.23
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 92.08
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 91.92
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 91.91
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 91.85
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 91.72
COG5222427 Uncharacterized conserved protein, contains RING Z 91.69
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 91.37
KOG1803649 consensus DNA helicase [Replication, recombination 91.26
COG5152259 Uncharacterized conserved protein, contains RING a 91.17
PHA02533534 17 large terminase protein; Provisional 90.85
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 90.51
KOG1131755 consensus RNA polymerase II transcription initiati 90.1
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 89.88
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 89.8
smart00491142 HELICc2 helicase superfamily c-terminal domain. 89.7
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 89.31
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 89.01
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 88.98
PRK10875615 recD exonuclease V subunit alpha; Provisional 88.79
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 88.49
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 88.22
KOG2660331 consensus Locus-specific chromosome binding protei 88.14
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 87.88
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 86.9
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 85.49
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 85.23
COG5220314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 83.88
PRK04296190 thymidine kinase; Provisional 83.55
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 82.9
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 82.64
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 81.3
KOG18051100 consensus DNA replication helicase [Replication, r 81.18
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 80.95
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 80.1
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-103  Score=854.42  Aligned_cols=575  Identities=41%  Similarity=0.688  Sum_probs=480.6

Q ss_pred             cCCCCCCccccCCchHHHHHHHHHHHhhccCCCcccceeecCCCCchHHHHHHHHHhhhcccccchhhhccccccccccC
Q 001680          288 EATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISIIALIQMQRSLQSKSKTEVLGNQKTEALNL  367 (1032)
Q Consensus       288 ~~~~P~~~~~~~LrpyQ~~gv~wml~~e~~~~~~~GGILADemGLGKTiqaIali~~~~~~~~~~~~~~~~~~~~~~~~~  367 (1032)
                      ...+|.++ -++|+|||+++++|+..+|.+.  ..|||||||||+|||||+|||++..                      
T Consensus       174 ~aeqP~dl-ii~LL~fQkE~l~Wl~~QE~Ss--~~GGiLADEMGMGKTIQtIaLllae----------------------  228 (791)
T KOG1002|consen  174 RAEQPDDL-IIPLLPFQKEGLAWLTSQEESS--VAGGILADEMGMGKTIQTIALLLAE----------------------  228 (791)
T ss_pred             cccCcccc-eecchhhhHHHHHHHHHhhhhh--hccceehhhhccchHHHHHHHHHhc----------------------
Confidence            34567664 7899999999999999999875  4899999999999999999999762                      


Q ss_pred             CCCCCCCCcCcccccccCCCCCCCCCCccccccccccCCCCCCceEEEcChhhHHHHHHHHHHhCCCCCCcEEEEEeCCC
Q 001680          368 DDDDDNGNAGLDKVKETGESDDIKPVPEVSTSTRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGS  447 (1032)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tLIV~P~sLl~QW~~Ei~k~~~~~~~l~vlv~~G~~  447 (1032)
                                                             ....+||||||.-.+.||.+||.+|...  .+++++|||.+
T Consensus       229 ---------------------------------------~~ra~tLVvaP~VAlmQW~nEI~~~T~g--slkv~~YhG~~  267 (791)
T KOG1002|consen  229 ---------------------------------------VDRAPTLVVAPTVALMQWKNEIERHTSG--SLKVYIYHGAK  267 (791)
T ss_pred             ---------------------------------------cccCCeeEEccHHHHHHHHHHHHHhccC--ceEEEEEeccc
Confidence                                                   1224599999999999999999999873  89999999999


Q ss_pred             CCCCccccCCCcEEEEcchhhhccCCCCCCCchhhhhhhcccccCCcchhhhhhhhhccccccccccCCCCCCCCCCccc
Q 001680          448 RTKDPVELAKYDVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKKGNVNSSIDY  527 (1032)
Q Consensus       448 r~~~~~~l~~~dVVItTY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k~~~~~~~k~~~~~~~~~~~~~~~  527 (1032)
                      |.++..++..||||+|||.++.+.+.++.              +|    |.            +      |    ...+.
T Consensus       268 R~~nikel~~YDvVLTty~vvEs~yRk~~--------------~G----fr------------r------K----ngv~k  307 (791)
T KOG1002|consen  268 RDKNIKELMNYDVVLTTYAVVESVYRKQD--------------YG----FR------------R------K----NGVDK  307 (791)
T ss_pred             ccCCHHHhhcCcEEEEecHHHHHHHHhcc--------------cc----cc------------c------c----CCccc
Confidence            99999999999999999999988765421              11    00            0      0    11223


Q ss_pred             CCCCCccccccEEEEecCcccCCcccHHHHHHHhcccCcEEEEeccCCCCChHHHHHHHHHHccCCcchh----------
Q 001680          528 GCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYAVY----------  597 (1032)
Q Consensus       528 ~~~~L~~~~w~rVIlDEAH~iKN~~S~~~kal~~L~a~~r~lLTGTPi~N~l~DL~sll~fL~p~~~~~~----------  597 (1032)
                      ..++||.+.|.|||+||||+||++.+.+++|++.|++.+||||||||+||++.|||+|++||+.+||..+          
T Consensus       308 e~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~  387 (791)
T KOG1002|consen  308 EKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASL  387 (791)
T ss_pred             ccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhcccccc
Confidence            4568999999999999999999999999999999999999999999999999999999999999986532          


Q ss_pred             ---------------------HHHHHHhccccccC-----chhHHHHHHHHHHHHHhhhccCccccCCCcccCCCCeEEE
Q 001680          598 ---------------------KSFYSTIKIPISRN-----SLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL  651 (1032)
Q Consensus       598 ---------------------~~F~~~~~~pi~~~-----~~~~~~~L~~~L~~~~lRRtk~~v~~g~p~i~LP~k~~~~  651 (1032)
                                           -.|.....+||...     ...++...+.+++.+|+||||-.-.+   -+.|||+.+.+
T Consensus       388 ~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAd---DLgLPPRiv~v  464 (791)
T KOG1002|consen  388 DWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERAD---DLGLPPRIVTV  464 (791)
T ss_pred             ceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccccc---ccCCCccceee
Confidence                                 12334445666443     23456788899999999999865333   25799999999


Q ss_pred             EEecCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhhcCcccccccccccccccchHHHhhcCChHH
Q 001680          652 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDM  731 (1032)
Q Consensus       652 v~v~ls~~er~lY~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~L~rLRq~c~hP~L~~~~~~~~~~~~~~e~~~~l~~~~  731 (1032)
                      ..--|+.+|..+|+.+...+++.|+.|...|.+..+|++|+.++.||||+++||.|+.-...           ..++.+ 
T Consensus       465 RrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~-----------~n~~~e-  532 (791)
T KOG1002|consen  465 RRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSAN-----------ANLPDE-  532 (791)
T ss_pred             ehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhh-----------cCCCcc-
Confidence            99999999999999999999999999999999999999999999999999999999864211           011110 


Q ss_pred             HHHHHhhhccccccccccCCCCCCccccccCcccchhhhhhhccC--CCCCCCCccccccccccccccccccccccCCCC
Q 001680          732 LIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITG--DDNMCPAPRCKEQLGADVVFSKTTLKNCVSDDG  809 (1032)
Q Consensus       732 ~~~~l~~le~~~~~C~ic~d~~~~~vvt~CgH~fC~~Ci~~~~~~--~~~~cp~~~c~~~l~~~~v~~~~~l~~~~~~~~  809 (1032)
                              ..+..+|.+|.|+.++++++.|.|.||.-|+.+|+.+  +.+...||.|...+..+..  ...+..      
T Consensus       533 --------nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls--e~alek------  596 (791)
T KOG1002|consen  533 --------NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS--EPALEK------  596 (791)
T ss_pred             --------ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc--chhhhh------
Confidence                    1256789999999999999999999999999998753  2222444467776655421  111100      


Q ss_pred             CCCCCCCcccc----ccCCCCccccchhHHHHHHHHHHhhhcccccchhhhhhcccCCCCCcccCCCCCCCCceEEEEec
Q 001680          810 GGSPTDSPFAD----KSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIVFSQ  885 (1032)
Q Consensus       810 ~~~~~~~~~~~----~~~~~~~~~~SsKl~~LlelL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFSq  885 (1032)
                         .....+..    ..+.++.+..|+|+++|.+.|.-+.+.+.                           ..|.|||||
T Consensus       597 ---~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~---------------------------t~KsIVFSQ  646 (791)
T KOG1002|consen  597 ---TDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDR---------------------------TAKSIVFSQ  646 (791)
T ss_pred             ---cchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHccc---------------------------chhhhhHHH
Confidence               00000111    12344567889999999999998887654                           449999999


Q ss_pred             cHHHHHHHHHHhhhcCceEEeeCCCCCHHHHHHHHHhhccCccccEEEeecCCCccccccccCCEEEEecCCCCCChHHH
Q 001680          886 WTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQ  965 (1032)
Q Consensus       886 f~~~ld~L~~~L~~~gi~~~~l~Gs~s~~eR~~~i~~F~~~~~~~VLLlStkagg~GLNL~~A~~VI~~Dp~WNp~~e~Q  965 (1032)
                      |++|||+|...|.+.|+..+.+.|+|+++.|...|+.|.++++++|||+|++|||+.|||+.|++|++|||||||+++-|
T Consensus       647 FTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Q  726 (791)
T KOG1002|consen  647 FTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQ  726 (791)
T ss_pred             HHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHhhhccCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCCCCHHHHHhhhc
Q 001680          966 AVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFM 1031 (1032)
Q Consensus       966 AigRi~RiGQ~k~V~VyrLi~~~TiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~lt~~dl~~Lf~ 1031 (1032)
                      |.+|+|||||.|||.|.+|++++|||++|+++|++|..|+++.+|+++  ....+||.+|+++||.
T Consensus       727 a~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde--~Ai~kLt~eDmqfLF~  790 (791)
T KOG1002|consen  727 AQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDE--EAISKLTEEDMQFLFN  790 (791)
T ss_pred             hhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcH--HHHHhcCHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999864  3457999999999995

>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1032
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 2e-20
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 4e-19
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 2e-20
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 3e-20
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 2e-18
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 8e-19
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 3e-18
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 532 LAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNSIDDLYSYFRFLKY 591
           L +V W  +V+DEAQ IKN +T++ +A   L++K R  L+GTPI+N +DDL+S   FL  
Sbjct: 145 LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNP 204
Query: 592 DPYAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFIDGQPIINLPPKTISL 651
                Y  F S    PI +      ++L+A++   +LRRTK    D   I +LP K  + 
Sbjct: 205 GLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTK---YDKAIINDLPDKIETN 261
Query: 652 TKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVK 709
              + + E+ A YK  E ++L  F    D+ T  +    IL  LL+L+Q  DHP L+K
Sbjct: 262 VYCNLTPEQAAMYKA-EVENL--FNNI-DSVTGIKRKGMILSTLLKLKQIVDHPALLK 315
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1032
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 5e-62
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-59
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 9e-61
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 2e-13
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 8e-39
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 2e-19
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 4e-15
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 8e-33
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 8e-07
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 1e-06
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 2e-06
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 3e-31
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 2e-17
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-06
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-04
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 2e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 3e-10
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 2e-09
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 2e-09
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 6e-09
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 6e-09
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 7e-09
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 9e-09
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 3e-08
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 4e-08
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 6e-08
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 3e-07
4epo_C149 E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 3e-07
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 6e-07
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 7e-07
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 9e-07
1z6u_A150 NP95-like ring finger protein isoform B; structura 1e-06
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 1e-06
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 2e-06
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 3e-06
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 4e-06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 4e-06
2cs3_A93 Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s 5e-06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 8e-06
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 9e-06
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 1e-05
2ysl_A73 Tripartite motif-containing protein 31; ring-type 1e-05
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 1e-05
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 2e-05
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 2e-05
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 2e-05
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 2e-05
2ysj_A63 Tripartite motif-containing protein 31; ring-type 3e-05
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 4e-05
2ecw_A85 Tripartite motif-containing protein 30; metal bind 5e-05
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 8e-05
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 4e-04
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 4e-04
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 6e-04
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 6e-04
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
 Score =  218 bits (558), Expect = 5e-62
 Identities = 108/460 (23%), Positives = 166/460 (36%), Gaps = 145/460 (31%)

Query: 279 LEDLNQPKVEATLPDGLLSVNLLKHQKIALAWMLQKETRSLHCLGGILADDQGLGKTISI 338
              +     +   P  + +  L  +Q    +WM  +    L   G  LADD GLGKT+  
Sbjct: 18  GSHMASKSFQLLEPYNIKAN-LRPYQIKGFSWM--RFMNKLG-FGICLADDMGLGKTLQT 73

Query: 339 IALIQMQRSLQSKSKTEVLGNQKTEALNLDDDDDNGNAGLDKVKETGESDDIKPVPEVST 398
           IA+                                        K+               
Sbjct: 74  IAV------------------------------------FSDAKKEN------------- 84

Query: 399 STRSFSRRRPAAGTLVVCPASVLRQWARELEDKVPDKAALSVLIYHGGSRTKDPVELAKY 458
                    P   +LV+CP SVL+ W  EL    P    L   ++H         +L  Y
Sbjct: 85  ------ELTP---SLVICPLSVLKNWEEELSKFAPH---LRFAVFHEDRSKI---KLEDY 129

Query: 459 DVVLTTYSIVTNEVPKQPSVDEEEADEKNGETYGLSSEFSVNKKRKKISNVSKRGKKGKK 518
           D++LT                          TY +                         
Sbjct: 130 DIILT--------------------------TYAV------------------------- 138

Query: 519 GNVNSSIDYGCGPLAKVGWFRVVLDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNS 578
             +          L +V W  +V+DEAQ IKN +T++ +A   L++K R  L+GTPI+N 
Sbjct: 139 --LLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENK 191

Query: 579 IDDLYSYFRFLKYDP--YAVYKSFYSTIKIPISRNSLHGYKKLQAVLRAIMLRRTKGTFI 636
           +DDL+S   FL  +P     Y  F S    PI +      ++L+A++   +LRRTK    
Sbjct: 192 VDDLWSIMTFL--NPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY--- 246

Query: 637 DGQPIINLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLL 696
           D   I +LP K  +    + + E+ A YK    +         D+ T  +    IL  LL
Sbjct: 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI----DSVTGIKRKGMILSTLL 302

Query: 697 RLRQACDHPLLVKEYDFDSVGKISGEMAKRLPRDMLIDLL 736
           +L+Q  DHP L+K     SV + SG+M         ++++
Sbjct: 303 KLKQIVDHPALLKG-GEQSVRR-SGKM------IRTMEII 334
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94 Back     alignment and structure
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101 Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133 Back     alignment and structure
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3 Length = 93 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68 Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64 Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63 Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58 Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1032
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 3e-24
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 0.004
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 7e-23
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 2e-08
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 1e-19
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 5e-09
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 4e-13
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 1e-11
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 2e-08
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 1e-11
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 2e-11
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 4e-10
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 0.002
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 4e-10
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 2e-08
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 1e-06
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 3e-06
d1wima_94 g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016 1e-05
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 3e-05
d2baya156 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 { 7e-05
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 1e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 1e-04
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 7e-04
d2cs3a180 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Huma 8e-04
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.001
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 0.003
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  100 bits (249), Expect = 3e-24
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 3/153 (1%)

Query: 879  KSIVFSQWTRMLDLVENSLNQHC-IQYRRLDGTMSLPARDRAVKDFNTDREITVMLMSLK 937
            K  +F+Q+  M  ++ N + +    +   L G +S   RD  +  F  +  +  +++S+K
Sbjct: 87   KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146

Query: 938  AGNLGLNMVAASHVILLDLWWNPTTEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKL 997
            AG  G+N+ +A+ VI  D WWNP  EDQA DR +RIGQTR V V +L    T+E++I +L
Sbjct: 147  AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQL 206

Query: 998  QDDKRKMVASAFGEDQGGGTASRLTVEDLRYLF 1030
               KR +              + L+ E+LR + 
Sbjct: 207  LAFKRSLFKDIISSGD--SWITELSTEELRKVI 237
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1032
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.91
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.88
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.85
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.85
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.8
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.79
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.76
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.75
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.72
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.71
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.71
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.63
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.58
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.53
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.53
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.46
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.35
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.33
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.23
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.18
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.17
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.16
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.13
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.07
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 98.87
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 98.86
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 98.84
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 98.82
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.8
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 98.79
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.79
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 98.78
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.76
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 98.69
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.54
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.5
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.46
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.16
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.05
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.04
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 97.99
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 97.86
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 97.81
d2c2la280 STIP1 homology and U box-containing protein 1, STU 97.76
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 97.52
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 97.23
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.2
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.17
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 97.03
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.98
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 96.81
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 96.73
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 96.52
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 96.44
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 96.13
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 95.89
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 95.69
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 95.26
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 95.24
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 91.61
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 83.0
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=355.28  Aligned_cols=264  Identities=27%  Similarity=0.407  Sum_probs=209.8

Q ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             69997389999419999999999999999999999973087750089999999998752173100122344432201179
Q 001680          643 NLPPKTISLTKVDFSKEEWAFYKKLESDSLKKFKAFADAGTVNQNYANILLMLLRLRQACDHPLLVKEYDFDSVGKISGE  722 (1032)
Q Consensus       643 ~LPpk~~~~v~v~ls~~er~~Y~~l~~~~~~~~~~~~~~g~~~~~~~~iL~~LlrLRq~c~hP~Lv~~~~~~~~~~~~~e  722 (1032)
                      .||||++.++.|+|++.|+++|+.+....+.     ...........++|..+++|||+|+||.|+........      
T Consensus         8 ~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~-----~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~------   76 (346)
T d1z3ix1           8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKP-----VESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGE------   76 (346)
T ss_dssp             TSCCEEEEEEEECCCHHHHHHHHHHHHHHCG-----GGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTC------
T ss_pred             CCCCCEEEEEEECCCHHHHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCC------
T ss_conf             0889879999969799999999999998999-----98654487168999999999999579988611110221------


Q ss_pred             HHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86119937999999620014442334689999951034696220222322102899999986110123554100120002
Q 001680          723 MAKRLPRDMLIDLLSRLETSSAICCVCSDPPEDSVVTMCGHVFCYQCASEYITGDDNMCPAPRCKEQLGADVVFSKTTLK  802 (1032)
Q Consensus       723 ~~~~l~~~~~~~~l~~le~~~~~C~iC~d~~~~~vit~CgH~fc~~ci~~~~~~~~~~cp~~~cr~~l~~~~v~~~~~l~  802 (1032)
                                       +  ......                              ...|                    
T Consensus        77 -----------------~--~~~~~~------------------------------~~~~--------------------   87 (346)
T d1z3ix1          77 -----------------E--GFDGAL------------------------------DLFP--------------------   87 (346)
T ss_dssp             -----------------T--TCTTGG------------------------------GTSC--------------------
T ss_pred             -----------------C--CCCCHH------------------------------HHCC--------------------
T ss_conf             -----------------1--232003------------------------------3123--------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             24579999999999434446877753310469999999997311036552456520026889876557899989962899
Q 001680          803 NCVSDDGGGSPTDSPFADKSGILDNEYISSKIRTVLDILHTQCELNTKCSIVEIHDLAGSNGSSAVHSKSPIEGPIKSIV  882 (1032)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SsKl~~L~elL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvII  882 (1032)
                                      ............|+|+..|.++|.......                            ++|+||
T Consensus        88 ----------------~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~----------------------------g~KvlI  123 (346)
T d1z3ix1          88 ----------------QNYSTKAVEPQLSGKMLVLDYILAMTRTTT----------------------------SDKVVL  123 (346)
T ss_dssp             ----------------SSCCSSSCCGGGSHHHHHHHHHHHHHHHHC----------------------------CCEEEE
T ss_pred             ----------------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHC----------------------------CCCEEE
T ss_conf             ----------------341000014001789999999999988751----------------------------895168


Q ss_pred             EECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCC
Q ss_conf             945288899999985326962896079989789999999660696-5208884137775555446678899956999979
Q 001680          883 FSQWTRMLDLVENSLNQHCIQYRRLDGTMSLPARDRAVKDFNTDR-EITVMLMSLKAGNLGLNMVAASHVILLDLWWNPT  961 (1032)
Q Consensus       883 FSqft~~ld~L~~~L~~~gi~~~~l~Gs~s~~~R~~~I~~F~~~~-~~~VlLlSlkagg~GLNLt~A~~VI~lDp~WNp~  961 (1032)
                      ||+|+.++++|+..|...|+.+.+++|+++.++|+++++.|+++. ...|||+|+++||+||||+.|++||+||+||||+
T Consensus       124 Fs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~  203 (346)
T d1z3ix1         124 VSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPA  203 (346)
T ss_dssp             EESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHH
T ss_pred             EEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             86301456799999763002411011100278899999865102343302540331444335656430799945788615


Q ss_pred             HHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             27788572101399443999999958999999999999999999975168889986678899999863239
Q 001680          962 TEDQAVDRAHRIGQTRPVTVTRLTIRDTVEDRILKLQDDKRKMVASAFGEDQGGGTASRLTVEDLRYLFMV 1032 (1032)
Q Consensus       962 ~e~QAigRi~RiGQ~k~V~Vyrli~~dTiEe~I~~lq~~K~~l~~~~~g~~~~~~~~~~l~~~dl~~Lf~~ 1032 (1032)
                      .+.||+||+||+||+++|+||+|+++|||||+|+++|..|..+++.+++++..  ....++.+||+.||.+
T Consensus       204 ~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K~~l~~~v~~~~~~--~~~~~~~~~l~~lf~~  272 (346)
T d1z3ix1         204 NDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD--VERHFSLGELRELFSL  272 (346)
T ss_dssp             HHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS--CCCSSCHHHHHHHTCC
T ss_pred             HHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHH--HHHCCCHHHHHHHHCC
T ss_conf             58676333403489984389998738989999999999999999987588655--5402899999999647
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure