Citrus Sinensis ID: 001688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------103
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHcccccHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHHHHHHHcccHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHHHHHHHHHcccEEccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHccccccccHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccc
cccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHcccccccccccHHHHHHHHHHHHHEEEEEccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccHccccHHHHHHHHHHHHHcccccccccccccHHHcccEEEEEccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHcccHHHHHcEEEEEEccccccccccccccHHHHHHHHHHHHHHcccHcccEEEccccEEEcccccccHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccccccccEcEEccccccccccEEccccHHHcEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHccccHHHHHHHHHcccccccHHHHHHccEEccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHccccccEEEEEcccccccccccEEEHHHcEEEccccccHHHHHHHHHHHHHHccccccc
mffsgdpttrkrvdlggrsskerDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIqnvnrqcfgpqsaFFRQLFFFfnarnvsdISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDqlfvtpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIphigqkpcicpnidprwsffsqiltipflwHLFPYIKEvfatgrtsqHYIHQMALCVQNhanvlphevsmelpgYACLLGNILETagvalsqpdcsfemGVDLAAITTFLLkalppikssressmvsdddmtagdevmepvINRDLEKQITSAIDSRFLLQLTNVLFSgfhllrgphdegpgdkeVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCheirkwpflpylsgdapgwllplavfcpvykhmltivdneefyeqekplslkDIRHLIVILREALWHLLwlnptshpnvgksvsspppankmlpaeAIQHRVSTVASEVLSQLQDwnnrrefvppsdfhadgvndffisqatidgtraneilkqapflvpftSRAKIFQSQLASVRqrhgshgvftrsrfRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNElgveeagidgggiFKDFMENITRAAFDVQYGlfketsdhllypnpgsgmiheQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNylndlpsldpeLYRHLIFLKHYEADISELELYFVILNNeygeqteeellpggknirvtNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLIsgsldsldfddlrqntnyvggyhsEHYVIEMFWEVLKSFSLENQKKFLKFVtgcsrgpllgfkylepLFCIQRAAgsaseealdrlptsatcmnllklppyrskeqMSTKLLYAINAEAGFDLS
mffsgdpttrkrvdlggrsskerdrqklleqtrlernrrlylrrqnhaaikiqkcfrgkkAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTpeesntpptLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAlppikssressmvsdddmtagDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLasvrqrhgshgvftrsrfrirrDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEAldrlptsatcmnllklppyrskeqMSTKLLYAINaeagfdls
MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTrlernrrlylrrQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAffrqlffffNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHElqllisgsldsldfddlRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
**************************************RLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVT******PPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL***************************INRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHD****DKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNP*******************************VASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYS********DLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAG************SATCMNLLKLP**********KLLYAIN********
MFF********************************************AAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKE**********ISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQ**************PGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKA********************************L**QITSAIDSRFLLQLTNVLFSGF*****************AVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC*****************GWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTS***************************STVASEVLSQLQDWNNRREFVPPSDFHADGVN****************ILKQAPFLVPFTSRAKIFQSQLA****************FRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
************************RQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIK*************TAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHP**********PANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQS************GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
*************************QKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPI*********************EPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA*****
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISSLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKALPPIKSSRESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRCHEIRKWPFLPYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1028 2.2.26 [Sep-21-2011]
Q8RWB81029 E3 ubiquitin-protein liga yes no 0.995 0.994 0.719 0.0
Q80U951083 Ubiquitin-protein ligase yes no 0.955 0.906 0.301 1e-108
Q153861083 Ubiquitin-protein ligase yes no 0.955 0.906 0.296 1e-106
Q7Z3V41068 Ubiquitin-protein ligase no no 0.551 0.530 0.358 1e-101
Q08CZ01072 Ubiquitin-protein ligase no no 0.566 0.542 0.356 1e-101
Q9ES341070 Ubiquitin-protein ligase no no 0.551 0.529 0.357 1e-100
Q9SCQ21142 E3 ubiquitin-protein liga no no 0.500 0.450 0.365 4e-97
Q1K9C41029 Probable E3 ubiquitin pro yes no 0.498 0.497 0.372 1e-92
P53119910 Probable E3 ubiquitin-pro yes no 0.378 0.427 0.405 2e-71
Q8GY233681 E3 ubiquitin-protein liga no no 0.371 0.103 0.394 6e-68
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1 Back     alignment and function desciption
 Score = 1561 bits (4042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 744/1034 (71%), Positives = 857/1034 (82%), Gaps = 11/1034 (1%)

Query: 1    MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
            MFFSGDP+TRKRVDLGGRS+KERD +KLLEQTR+ERNRRL  ++QN AA+KIQK FRG++
Sbjct: 1    MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query: 61   AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
            +M IE SKVR  F  TYG + QNV+R CF P S+F RQ  FFF A+N  D  +LVETCRL
Sbjct: 61   SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query: 121  MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
            ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct: 121  LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query: 181  NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
            +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct: 181  SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query: 241  LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
            LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct: 241  LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query: 301  QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
            QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct: 301  QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query: 361  KALPPIKSSRESSM--VSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
            + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct: 361  ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query: 419  FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
              L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct: 421  VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query: 479  HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
            HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct: 478  HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query: 535  LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
            LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct: 538  LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query: 595  NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
            NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct: 596  NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query: 655  QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
            Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct: 656  QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query: 715  IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
            IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct: 716  IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query: 775  ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
            ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct: 776  ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query: 835  GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
            GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct: 836  GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query: 895  FNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 954
            FNEHELQ+LISGS+DSLD DDLR NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLKF
Sbjct: 896  FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKF 955

Query: 955  VTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTK 1014
            VTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE + TK
Sbjct: 956  VTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETK 1015

Query: 1015 LLYAINAEAGFDLS 1028
            L+YAI+AEAGFDLS
Sbjct: 1016 LMYAISAEAGFDLS 1029
Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2 Back     alignment and function description
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3 Back     alignment and function description
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3 Back     alignment and function description
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1 Back     alignment and function description
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3 Back     alignment and function description
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1 Back     alignment and function description
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1 Back     alignment and function description
>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HUL5 PE=1 SV=1 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1028
3594770931034 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.989 0.764 0.0
3594770951016 PREDICTED: E3 ubiquitin-protein ligase U 0.981 0.993 0.758 0.0
2241088021027 predicted protein [Populus trichocarpa] 0.994 0.995 0.755 0.0
2555564921067 ubiquitin-protein ligase, putative [Rici 0.974 0.939 0.768 0.0
3565217191026 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.998 0.728 0.0
3565559691031 PREDICTED: E3 ubiquitin-protein ligase U 0.995 0.992 0.730 0.0
2978303421029 hypothetical protein ARALYDRAFT_479191 [ 0.995 0.994 0.725 0.0
794052971029 E3 ubiquitin-protein ligase UPL6 [Arabid 0.995 0.994 0.719 0.0
3565649801026 PREDICTED: E3 ubiquitin-protein ligase U 0.996 0.998 0.722 0.0
3565217211012 PREDICTED: E3 ubiquitin-protein ligase U 0.984 1.0 0.721 0.0
>gi|359477093|ref|XP_003631936.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Vitis vinifera] gi|296083205|emb|CBI22841.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1666 bits (4315), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/1039 (76%), Positives = 900/1039 (86%), Gaps = 16/1039 (1%)

Query: 1    MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKK 60
            MFFSGD +TRKRVDLGGRSSKERDRQKLLEQTRLERNRR +LR+QN AA++IQKCFRG+K
Sbjct: 1    MFFSGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRWWLRQQNSAALRIQKCFRGRK 60

Query: 61   AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAFFRQLFFFFNARNVSDISVLVETCRL 120
            A+E EH+KVREQFF TYGRH QNV+R  FGP S F RQL FFF+ARNV D S LVETCRL
Sbjct: 61   AVEAEHAKVREQFFTTYGRHCQNVDRHSFGPDSEFLRQLLFFFDARNVGDFSALVETCRL 120

Query: 121  MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
            +++FV++SGD V LFAG+DYSSK ALVD+RVK+ A+ACIQAVHQNR + K QL +T +E 
Sbjct: 121  LQNFVRDSGDAVNLFAGMDYSSKNALVDYRVKQLAYACIQAVHQNRNQFKGQLLMTSDEP 180

Query: 181  NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
            ++P  LLLEAVV L+DS+LPW CK+V +LL+RN ++LLRE+++T KES+E +S+ GR+ S
Sbjct: 181  SSPTILLLEAVVMLLDSKLPWVCKIVGHLLQRNTYSLLREIVLTAKESVETYST-GRVPS 239

Query: 241  LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
            LE +LT++I H+GQ  CICP IDPRWSF SQILTIPFLW LFPY+KEVF     S+HYIH
Sbjct: 240  LECLLTILISHVGQNHCICPIIDPRWSFSSQILTIPFLWALFPYLKEVFMRRGLSEHYIH 299

Query: 301  QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
            QMALCVQNH NVLP ++S + PGYACLLGNILETA V  SQPDCS +M +D+AA+ TFLL
Sbjct: 300  QMALCVQNHTNVLPDDISADFPGYACLLGNILETASVFFSQPDCSLDMAIDIAAVMTFLL 359

Query: 361  KALPPIKSS----RESSMVSDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLF 416
            +ALPP+KSS    +E+S   +D+M  GDE+ME V++RDLE+QI++AID RFLLQLTN LF
Sbjct: 360  QALPPMKSSNRESKENSSGGEDEMAVGDEIMEKVVSRDLEQQISNAIDPRFLLQLTNALF 419

Query: 417  SGFHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMK 476
             G  L+    +EGP D+EVAA+GAACAFLHV FN LPLE IMTVLAYRTELV LLW ++K
Sbjct: 420  GGISLINHLCEEGPDDREVAAIGAACAFLHVTFNILPLERIMTVLAYRTELVPLLWKFIK 479

Query: 477  RCHEIRKWPFL----PYLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDI 532
            RCHE +KW  L     YLSGD PGW LPLAVFCPVYKHMLTIVDNEEFYEQEKPLSL DI
Sbjct: 480  RCHENQKWSSLSEQLAYLSGDMPGWQLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLSDI 539

Query: 533  RHLIVILREALWHLLWLNPTSHPNVGKSVSSPPP---ANKMLPAEAIQHRVSTVASEVLS 589
            R LIVILR+ALW LLW+NP   PN+ K    P P   +++  P E  Q RVS V +E+LS
Sbjct: 540  RCLIVILRQALWQLLWVNPAMPPNLMK----PAPEVTSHRGHPIEFTQQRVSIVTAELLS 595

Query: 590  QLQDWNNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQ 649
            QLQDWNNRR+F PPS FHAD VN++FISQA I+ TRA  ILKQAPFLVPFTSR KIF SQ
Sbjct: 596  QLQDWNNRRQFAPPSYFHADAVNEYFISQAVIENTRAYTILKQAPFLVPFTSRVKIFTSQ 655

Query: 650  LASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAG 709
            LA+ RQR GSH VFTR+RFRIRRDHILEDA++Q+S +SE+DLRG IR++FVNE GVEEAG
Sbjct: 656  LAAARQRDGSHSVFTRNRFRIRRDHILEDAFNQLSVLSEDDLRGLIRISFVNEFGVEEAG 715

Query: 710  IDGGGIFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAK 769
            IDGGGIFKDFMENITRAAFDVQYGLFKET+DHLLYPNPGSGMIHEQHLQFFHFLG +L K
Sbjct: 716  IDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTVLGK 775

Query: 770  AMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI 829
            AMFEGILVDIPFATFFLSKLKQK+NYLNDLPSLDPELYRHLIFLKH+E D+SELELYFVI
Sbjct: 776  AMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHFEGDLSELELYFVI 835

Query: 830  LNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQK 889
            +NNEYGEQTEEELLPGGKNIRVTNENVITFIHL++NHRLNFQIRQQS+HFLRGFQQLIQ+
Sbjct: 836  VNNEYGEQTEEELLPGGKNIRVTNENVITFIHLIANHRLNFQIRQQSTHFLRGFQQLIQR 895

Query: 890  DWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQK 949
            DWI+MF+EHELQLLISGSLD LD DDLR NTNY GGYHSEHYVIE FWEVLKSF+LENQ 
Sbjct: 896  DWIEMFDEHELQLLISGSLDGLDVDDLRSNTNYAGGYHSEHYVIETFWEVLKSFTLENQM 955

Query: 950  KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 1009
            KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE
Sbjct: 956  KFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKE 1015

Query: 1010 QMSTKLLYAINAEAGFDLS 1028
            QM+TKLLYAINA+AGFDLS
Sbjct: 1016 QMATKLLYAINADAGFDLS 1034

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359477095|ref|XP_003631937.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108802|ref|XP_002314972.1| predicted protein [Populus trichocarpa] gi|222864012|gb|EEF01143.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255556492|ref|XP_002519280.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223541595|gb|EEF43144.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356521719|ref|XP_003529499.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356555969|ref|XP_003546300.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like [Glycine max] Back     alignment and taxonomy information
>gi|297830342|ref|XP_002883053.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] gi|297328893|gb|EFH59312.1| hypothetical protein ARALYDRAFT_479191 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79405297|ref|NP_188346.2| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|334185408|ref|NP_001189915.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|75247591|sp|Q8RWB8.1|UPL6_ARATH RecName: Full=E3 ubiquitin-protein ligase UPL6; Short=Ubiquitin-protein ligase 6 gi|20260606|gb|AAM13201.1| unknown protein [Arabidopsis thaliana] gi|37202000|gb|AAQ89615.1| At3g17205 [Arabidopsis thaliana] gi|332642397|gb|AEE75918.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] gi|332642399|gb|AEE75920.1| E3 ubiquitin-protein ligase UPL6 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564980|ref|XP_003550723.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356521721|ref|XP_003529500.1| PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1028
TAIR|locus:20879391029 UPL6 "AT3G17205" [Arabidopsis 0.995 0.994 0.693 0.0
UNIPROTKB|Q5W7241030 OSJNBa0017J22.6 "Os05g0159000 0.996 0.994 0.590 0.0
UNIPROTKB|E1BZA81086 UBE3C "Uncharacterized protein 0.392 0.372 0.452 1.7e-101
UNIPROTKB|F1NZJ61084 UBE3C "Uncharacterized protein 0.392 0.372 0.452 2.1e-101
RGD|15599861083 Ube3c "ubiquitin protein ligas 0.392 0.373 0.443 2.6e-101
UNIPROTKB|F1N7031085 UBE3C "Uncharacterized protein 0.392 0.372 0.450 1.3e-99
UNIPROTKB|Q153861083 UBE3C "Ubiquitin-protein ligas 0.392 0.373 0.443 1.7e-99
UNIPROTKB|F1PB351088 UBE3C "Uncharacterized protein 0.392 0.371 0.443 3.4e-99
MGI|MGI:21409981083 Ube3c "ubiquitin protein ligas 0.392 0.373 0.445 5.5e-99
FB|FBgn00359531078 CG5087 [Drosophila melanogaste 0.522 0.498 0.338 3.4e-97
TAIR|locus:2087939 UPL6 "AT3G17205" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3739 (1321.3 bits), Expect = 0., P = 0.
 Identities = 717/1034 (69%), Positives = 825/1034 (79%)

Query:     1 MFFSGDPTTRKRVDLGGRSSKERDRQKLLEQTXXXXXXXXXXXXQNHAAIKIQKCFRGKK 60
             MFFSGDP+TRKRVDLGGRS+KERD +KLLEQT            QN AA+KIQK FRG++
Sbjct:     1 MFFSGDPSTRKRVDLGGRSTKERDARKLLEQTRMERNRRLLQKQQNSAALKIQKFFRGRR 60

Query:    61 AMEIEHSKVREQFFATYGRHIQNVNRQCFGPQSAXXXXXXXXXNARNVSDISVLVETCRL 120
             +M IE SKVR  F  TYG + QNV+R CF P S+          A+N  D  +LVETCRL
Sbjct:    61 SMAIERSKVRHDFCETYGNNCQNVDRHCFEPGSSFLRQFLFFFKAQNSGDFVILVETCRL 120

Query:   121 MKHFVQESGDVVGLFAGIDYSSKRALVDFRVKKFAFACIQAVHQNRKELKDQLFVTPEES 180
             ++ FV  SGD+V LF+G+DYSS+  LVDFRVKK AF CI+A+HQNR  L+DQL VTPEE+
Sbjct:   121 LQSFVDSSGDIVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEA 180

Query:   181 NTPPTLLLEAVVFLIDSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRISS 240
             +    +L+EAV  L+D +LPW CK+VSYL +R VF L+RE++ T KES    +  G I S
Sbjct:   181 SISTAILMEAVSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAKESPRGKTMTGNILS 240

Query:   241 LERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIH 300
             LERVL LI+PHIG++PC C  +DPRWSF S ILTIP +W LFP +K VFA    SQHYIH
Sbjct:   241 LERVLILIVPHIGREPCCCTVVDPRWSFSSMILTIPLIWKLFPNLKVVFANPSLSQHYIH 300

Query:   301 QMALCVQNHANVLPHEVSMELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLL 360
             QMA C+Q    VLP E S E PGYACLLGN L+TA V LSQP+CS +M +D+A + TF L
Sbjct:   301 QMASCIQKDTCVLPMETSPEFPGYACLLGNTLDTANVVLSQPECSLDMAIDIALVATFFL 360

Query:   361 KALPPIKSSRESSMV--SDDDMTAGDEVMEPVINRDLEKQITSAIDSRFLLQLTNVLFSG 418
             + LPP+KSS   S    SD+D    D+V   V+N+ LE+QIT+AIDSRFLLQLTNVLF  
Sbjct:   361 ETLPPVKSSEGESRQGSSDEDDMLIDDVPGLVLNKALEQQITNAIDSRFLLQLTNVLFRQ 420

Query:   419 FHLLRGPHDEGPGDKEVAAVGAACAFLHVAFNTLPLECIMTVLAYRTELVQLLWHYMKRC 478
               L    +DE   DKE  A+G A +FL+ AFNTLPLE IMT+LAYRTELV +LW+YMKRC
Sbjct:   421 VSLGMQSYDE---DKEALAIGTASSFLYAAFNTLPLERIMTILAYRTELVAVLWNYMKRC 477

Query:   479 HEIRKWPFLP----YLSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRH 534
             HE +KW  +P    YL GDAPGWLLPL VFCPVYKHML IVDNEEFYE+EKPLSL+DIR 
Sbjct:   478 HENQKWSSMPKLLAYLPGDAPGWLLPLVVFCPVYKHMLMIVDNEEFYEREKPLSLQDIRL 537

Query:   535 LIVILREALWHLLWLNPTSHPNVGKSVSSPPPANKMLPAEAIQHRVSTVASEVLSQLQDW 594
             LI+IL++ALW LLW+NP + PN GKSVS+    +K  P E IQ+R+  V SE+LSQLQDW
Sbjct:   538 LIIILKQALWQLLWVNPLTQPNTGKSVSND--LSKKNPIELIQNRMGIVVSELLSQLQDW 595

Query:   595 NNRREFVPPSDFHADGVNDFFISQATIDGTRANEILKQAPFLVPFTSRAKIFQSQLASVR 654
             NNR++F   SDF AD VN++FISQA ++GTRAN IL QAPFL+PFTSR KIF +QLA+ R
Sbjct:   596 NNRKQFTSSSDFQADSVNEYFISQAIMEGTRANYILMQAPFLIPFTSRVKIFTTQLATAR 655

Query:   655 QRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 714
             Q HGS G+F R+RFRIRRDHILEDAY+QMS +SE+DLR +IRVTFVNELGVEEAGIDGGG
Sbjct:   656 QSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGG 715

Query:   715 IFKDFMENITRAAFDVQYGLFKETSDHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEG 774
             IFKDFME ITRAAFDVQYGLFKET+DH+LYPNPGSGMIHEQHLQFFHFLG LLAKAMFEG
Sbjct:   716 IFKDFMEKITRAAFDVQYGLFKETADHMLYPNPGSGMIHEQHLQFFHFLGSLLAKAMFEG 775

Query:   775 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEY 834
             ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLK Y+ DIS+LELYFVILNNEY
Sbjct:   776 ILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDLELYFVILNNEY 835

Query:   835 GEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDM 894
             GE+TEEELLPGG+++RVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLI K+WIDM
Sbjct:   836 GERTEEELLPGGQDMRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIPKEWIDM 895

Query:   895 FNEHEXXXXXXXXXXXXXXXXXRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 954
             FNEHE                 R NTNY GGYH+ HYVI+MFWEV+KSFS ENQKKFLKF
Sbjct:   896 FNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKF 955

Query:   955 VTGCSRGPLLGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTK 1014
             VTGCSRGPLLGFKYLEP FCIQRAAGSAS E++DRLPTSATCMNLLKLPPY+SKE + TK
Sbjct:   956 VTGCSRGPLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETK 1015

Query:  1015 LLYAINAEAGFDLS 1028
             L+YAI+AEAGFDLS
Sbjct:  1016 LMYAISAEAGFDLS 1029
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IBA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0016881 "acid-amino acid ligase activity" evidence=IEA
GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA
GO:0000151 "ubiquitin ligase complex" evidence=ISS
GO:0016567 "protein ubiquitination" evidence=ISS
UNIPROTKB|Q5W724 OSJNBa0017J22.6 "Os05g0159000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZA8 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZJ6 UBE3C "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1559986 Ube3c "ubiquitin protein ligase E3C" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N703 UBE3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q15386 UBE3C "Ubiquitin-protein ligase E3C" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB35 UBE3C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2140998 Ube3c "ubiquitin protein ligase E3C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0035953 CG5087 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWB8UPL6_ARATH6, ., 3, ., 2, ., -0.71950.99510.9941yesno
Q80U95UBE3C_MOUSE6, ., 3, ., 2, ., -0.30160.95520.9067yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033190001
SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1036 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1028
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-152
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 1e-117
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 1e-100
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 5e-97
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  455 bits (1174), Expect = e-152
 Identities = 172/363 (47%), Positives = 226/363 (62%), Gaps = 15/363 (4%)

Query: 667  RFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRA 726
            +  +RRD ILEDA  Q+S +S  DL+  + V FV E      GID GG+ ++F   +++ 
Sbjct: 2    KITVRRDRILEDALRQLSKVSSSDLKKVLEVEFVGE-----EGIDAGGVTREFFTLVSKE 56

Query: 727  AFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 784
             F+  YGLF+ T D   LLYPNP S    E HL+ F FLG LL KA++EG L+D+PF+  
Sbjct: 57   LFNPSYGLFRYTPDDSGLLYPNPSSFA-DEDHLKLFRFLGRLLGKALYEGRLLDLPFSRA 115

Query: 785  FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVI-LNNEYGEQTEEELL 843
            F  KL  K   L DL  LDPELY+ L  L   + D  +LEL F I L++ +G     EL 
Sbjct: 116  FYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGDEDDLELTFTIELDSSFGGAVTVELK 175

Query: 844  PGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLL 903
            PGG++I VTNEN   ++ L  ++RLN  I +Q   F  GF ++I ++ + +F   EL+LL
Sbjct: 176  PGGRDIPVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELL 235

Query: 904  ISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL 963
            I GS D +D +DL++NT Y GGY S+   I+ FWEVL+SF+ E +KKFL+FVTG SR P+
Sbjct: 236  ICGSED-IDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPV 294

Query: 964  LGFKYLEPLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1023
             GF  L P F I+R          DRLPT+ TC NLLKLPPY SKE +  KLLYAIN  A
Sbjct: 295  GGFADLNPKFTIRRV-----GSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAINEGA 349

Query: 1024 GFD 1026
            GF 
Sbjct: 350  GFG 352

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1028
KOG44271096 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG09421001 consensus E3 ubiquitin protein ligase [Posttransla 100.0
KOG0941850 consensus E3 ubiquitin protein ligase [Posttransla 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
KOG0939720 consensus E3 ubiquitin-protein ligase/Putative ups 100.0
KOG0170621 consensus E3 ubiquitin protein ligase [Posttransla 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0940358 consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos 100.0
KOG09433015 consensus Predicted ubiquitin-protein ligase/hyper 100.0
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.53
smart0001526 IQ Short calmodulin-binding motif containing conse 96.91
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.9e-186  Score=1558.01  Aligned_cols=978  Identities=30%  Similarity=0.466  Sum_probs=837.3

Q ss_pred             CCCCcccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCChHH
Q 001688           18 RSSKERDRQKLLEQTRLERNRRLYLRRQNHAAIKIQKCFRGKKAMEIEHSKVREQFFATYGRHIQNVNR---QCFGPQSA   94 (1028)
Q Consensus        18 ~S~~e~~r~~lL~q~r~eRe~R~~~rrr~~aAi~IQ~~~Rg~~~r~~~~~~~r~efd~~~~~~~~~~~~---~~~~~~~~   94 (1028)
                      .+..+++|++||+|+++|||+|+.+|||++||++||++||||++|++++.+|+++||.+|..+..+.++   ....|...
T Consensus         2 ~~~~q~sra~fl~k~~qeREer~~qrrr~~aa~~iq~~lrsyl~Rkk~~~~I~~e~d~~f~~d~~d~~~~~erv~~~~l~   81 (1096)
T KOG4427|consen    2 FSSGQISRAAFLAKVSQEREERSYQRRREAAALFIQRVLRSYLVRKKAQIEIQEEFDNLFSCDSVDLTKVLERVARPFLP   81 (1096)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHhhhHHH
Confidence            344558999999999999999999999999999999999999999999999999999999988865433   33345667


Q ss_pred             hhhhheeeeccCCcccHHHHHHHHHHHHHHHhhcCCccccccccccccc-chhHHHHHHHHHHHHHHHHHHhhhhhhccc
Q 001688           95 FFRQLFFFFNARNVSDISVLVETCRLMKHFVQESGDVVGLFAGIDYSSK-RALVDFRVKKFAFACIQAVHQNRKELKDQL  173 (1028)
Q Consensus        95 ~lr~llFf~~~~~~~D~~rL~~lc~~ll~s~~~~~~~~~~~~~~~~~~~-~~~W~~qiKkll~lC~~~l~~~~~~lk~~~  173 (1028)
                      ++|.+++.++.+ ..|.+||+++||+|+.+|++++|.+.+||++++++| ...|+.|||+++++|++.|.+    ++||.
T Consensus        82 var~ll~q~r~i-e~~~e~~~~iCr~il~smds~n~~~~sfvsl~l~ke~sk~w~~qik~ils~c~~lL~e----ln~Er  156 (1096)
T KOG4427|consen   82 VARSLLVQHRKI-EAREERLEQICRKILLSMDSENDQKYSFVSLALGKEDSKTWICQIKRILSLCSFLLTE----LNPER  156 (1096)
T ss_pred             HHHHHHHHHHHH-HhHHHHHHHHHHHHHHhhcCCCCcceeeeeehhcccchHHHHHHHHHHHHHHHHHHHh----cCHHH
Confidence            899999999877 234899999999999999999999999999999999 999999999999999988888    99999


Q ss_pred             cCCCCCCCCcchhHHHHhhhcc--------------CCCchhHHHHHHHHHhcchHHHHHHHHHccCCCcccccccCCcc
Q 001688          174 FVTPEESNTPPTLLLEAVVFLI--------------DSRLPWTCKVVSYLLERNVFTLLRELIVTGKESMEIHSSYGRIS  239 (1028)
Q Consensus       174 ~~~~~~~al~~l~~L~~ft~~~--------------~~~~~~~~~i~~~L~~~g~y~~Lr~ll~~~~~~~~~~~~~~~~~  239 (1028)
                      ..|+...++. +|+|++|||++              ++|+.+|++||||++|+|||+.+|.+|.+++.+.+..  + ...
T Consensus       157 ~ad~~~~all-l~~livfTdpksWkilrn~n~e~lqtamn~ic~~i~gh~~q~~~Ys~mr~~l~~~t~~~~~~--l-~~~  232 (1096)
T KOG4427|consen  157 IADSIVNALL-LHILIVFTDPKSWKILRNENFEDLQTAMNIICQNIMGHLCQHGFYSAMRRYLKRGTKRTDPR--L-VIT  232 (1096)
T ss_pred             HHHHHHHHHH-HHeeeEEeCCcceeehhccchhhhHHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCCCcc--e-eee
Confidence            9999999999 99999999999              7788899999999999999999999999999776653  2 256


Q ss_pred             hHHHHHHHHcccccCCCCCCCCCCchhhhhhhhcchhhhhhccchhhHHHhhhccchhhHHHHHHhhhcccccCCccccc
Q 001688          240 SLERVLTLIIPHIGQKPCICPNIDPRWSFFSQILTIPFLWHLFPYIKEVFATGRTSQHYIHQMALCVQNHANVLPHEVSM  319 (1028)
Q Consensus       240 ~l~~l~tl~~r~~~~~~~~~~~~~~~~~f~~~IlsIP~L~~~~p~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~  319 (1028)
                      ++++.+++.+||+.+.  ++ ++++...|.+.|||||+|..|+|+..++.....-+..+.+++++++.........+.+.
T Consensus       233 Tl~a~~sl~~rpvk~~--nf-sd~l~~~fv~~IltvPaLv~hL~~~~~q~le~~ss~~l~~K~l~~l~d~~~~ee~~tsm  309 (1096)
T KOG4427|consen  233 TLAATFSLRLRPVKQP--NF-SDNLVEEFVSLILTVPALVCHLPSALPQALEHLSSLMLLDKILNILRDMENSEEQSTSM  309 (1096)
T ss_pred             ehhhhhhhccccccCC--ch-HHHHHHHHHHHHhchhHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHhhcCC
Confidence            8999999999999988  66 77889999999999999999999866654444444556667777777766666667789


Q ss_pred             CcchHHHHHHHHHHhhhhccCCCCcccccchhHHHHHHHHHhhC-CCCCCC--CccC--------CCCCCCCCCCCCCcc
Q 001688          320 ELPGYACLLGNILETAGVALSQPDCSFEMGVDLAAITTFLLKAL-PPIKSS--RESS--------MVSDDDMTAGDEVME  388 (1028)
Q Consensus       320 ~~p~~~~lL~Nl~~l~~~~l~~~~~~~~~~~~~~~v~~~lL~~l-~~~~~~--~~~~--------~~~~dd~~~~~~~~~  388 (1028)
                      ++|+.+|+||||+++|+.  ++.+...++...++..|++.|.+| ++.++.  +.+.        |....-|...+..+.
T Consensus       310 e~~~~l~llgNiv~la~i--s~~~~e~~~~~~f~~~~~~sl~~~~e~tv~~~tk~~l~~wH~vlg~~s~~~ek~~n~~i~  387 (1096)
T KOG4427|consen  310 EGPSVLWLLGNIVHLATI--SETDLEDELESNFYVLYTHSLVTLAENTVSQVTKVGLTDWHPVLGWTSNETEKGNNVKIS  387 (1096)
T ss_pred             cccHhHHHHhhhheeeec--CcccccccccccchhhhHHHHHHHHHHHhhcccccceeeeehhhccccCCCCCccchhHH
Confidence            999999999999999996  444444444456999999999999 665541  2221        222222111000000


Q ss_pred             c--------------------------------c-ccchhhhh--hhhHHHHHHHHHH--HHHHHhhhccc-CCC-CCCC
Q 001688          389 P--------------------------------V-INRDLEKQ--ITSAIDSRFLLQL--TNVLFSGFHLL-RGP-HDEG  429 (1028)
Q Consensus       389 ~--------------------------------~-~~~~~~~~--~~~~~~~~~L~~~--v~~ll~~~~~~-~~~-~~~~  429 (1028)
                      .                                . ..+..+++  ...+.++++++..  ++..+.++... ..+ +++.
T Consensus       388 ~v~~q~~mlw~~~likll~~dile~~~las~~~~~~sk~s~~~~l~Is~l~sr~lrk~~~~~~~l~~v~ss~~~~~~~k~  467 (1096)
T KOG4427|consen  388 LVEKQLPMLWQWRLIKLLFGDILEIRVLASKDASTSSKKSPETLLDISRLLSRALRKSCVMGPVLGPVPSSNMLSFCPKW  467 (1096)
T ss_pred             HHHHHHHHHhhhhHHHHHhhhHHHhhhhccccccccCCCCCcchhHHHHHHHHHHHHhcccCCccCCCccchhhhccccc
Confidence            0                                0 00101100  0112222222221  12222222221 000 4567


Q ss_pred             CCchhhhHHHHHHHHHHHHHhhchh--hHHHHHHhchhhHHHHHHHHHHHhhccCCCCC--C--C--------------C
Q 001688          430 PGDKEVAAVGAACAFLHVAFNTLPL--ECIMTVLAYRTELVQLLWHYMKRCHEIRKWPF--L--P--------------Y  489 (1028)
Q Consensus       430 ~~~~~~~~v~~~c~~~~~~l~~l~~--~~iL~~Laf~~~ll~~LW~~i~~~~~~~~~~~--l--s--------------~  489 (1028)
                      .+++++..+..+|..|++.++|+.+  .+|+++|+|.+++++.+|.+|...++..+-..  .  +              .
T Consensus       468 ~s~~~v~lv~~iC~~y~aslnTl~~mr~~iltgl~~~dnll~~lW~~i~e~G~~~G~~~gs~~~~~~~k~~~ev~~~l~s  547 (1096)
T KOG4427|consen  468 NSSAEVLLVENICTAYDASLNTLWQMRLPILTGLCYLDNLLVNLWVNILELGPSPGPQPGSGQVNESTKDVLEVETLLGS  547 (1096)
T ss_pred             cCcccceehhhhhhHHHhhhhhHHHhhhHHhhcchhhhhhHHHHHHHHHHhCCCCCCCCCccccchhHHHHHhHHHHhCC
Confidence            7889999999999999999999988  89999999999999999999999998765211  1  0              1


Q ss_pred             CCCCCCcchhhHHhHHHHHhhhhccccchhhhccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCccCcccCCCCCCCC
Q 001688          490 LSGDAPGWLLPLAVFCPVYKHMLTIVDNEEFYEQEKPLSLKDIRHLIVILREALWHLLWLNPTSHPNVGKSVSSPPPANK  569 (1028)
Q Consensus       490 ~~~~~~~~~~~L~lFc~l~s~~L~ildD~Ef~~~~~Pfsl~el~~ls~~L~~~l~~l~~~~p~~~~~~~~~~~~~~~~~~  569 (1028)
                      ....+.+..++|.+||+||.|+++|+||+|||++|.||.++|+..++.+||.++|+++|         .+.++++.    
T Consensus       548 ~~~~sk~~tamL~LFcdc~ahlitILDd~e~yekq~pF~lee~~~i~s~lN~~vyk~i~---------~g~v~eak----  614 (1096)
T KOG4427|consen  548 PTGISKPVTAMLMLFCDCYAHLITILDDIEFYEKQVPFKLEELVRIASFLNTFVYKGIW---------DGTVPEAK----  614 (1096)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhhHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHH---------cccchhhh----
Confidence            11456778899999999999999999999999999999999999999999999999999         45665542    


Q ss_pred             CChhHHHHhHHHHHHHHHHHHHhhccccCCCCCCCCcccccCChhh-hhhhhccccchhhhhhcCCccccccchHHHHHH
Q 001688          570 MLPAEAIQHRVSTVASEVLSQLQDWNNRREFVPPSDFHADGVNDFF-ISQATIDGTRANEILKQAPFLVPFTSRAKIFQS  648 (1028)
Q Consensus       570 ~~~~~~~~~~~~~~~~~ll~~l~~rd~r~~f~p~~~w~~~~~~~~~-~~~~~~~~~~~~~il~~~Pf~~pf~~Rv~~f~~  648 (1028)
                           .....+|.+++++|..||+|||||+|+|++||+++++++.- ..+-+....++..++..+||+||+++||.+||.
T Consensus       615 -----~~t~~lF~S~h~~l~vLYeRDcRr~Fta~d~WL~pevkPs~f~~e~ek~~~~a~lll~~mpHviP~edRv~lFR~  689 (1096)
T KOG4427|consen  615 -----QLTTGLFDSAHRLLHVLYERDCRRPFTASDHWLIPEVKPSAFAAELEKVLPTADLLLTKMPHVIPHEDRVLLFRE  689 (1096)
T ss_pred             -----hHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcCCCCChhHHHHHHHhhcccceeEeccCCcccChHHHHHHHHH
Confidence                 23455999999999999999999999999999999998643 333333346677889999999999999999999


Q ss_pred             HHHHHHHhcCCC-----CCCccceEEEeCCchHHHHHHHhcCCCcccccCcEEEEEEeccCcccccccCCCchHHHHHHH
Q 001688          649 QLASVRQRHGSH-----GVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENI  723 (1028)
Q Consensus       649 ~~~~~~~~~~~~-----~~~~~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~G~~E~GiD~GG~~rEf~~~l  723 (1028)
                      +++++|...+..     .+-.+..|+|||++|+||+|+|+++++...+|+.++|+|+||.|++|+|||.||++|||++++
T Consensus       690 fVqkdKa~~~lv~ts~a~p~~~t~IvvrR~rivEDGf~qL~~l~~~alKs~IrVkFVNeqGl~EAGiDqdGvfKEFLeei  769 (1096)
T KOG4427|consen  690 FVQKDKASRGLVETSDASPARSTEIVVRRGRIVEDGFQQLNSLGSPALKSVIRVKFVNEQGLDEAGIDQDGVFKEFLEEI  769 (1096)
T ss_pred             HHhhhHHhhcccccccCCccceeEEEEEcccchhhHHHHHHhccchhhhceEEEEEecccCCcccccCccchHHHHHHHH
Confidence            999999776543     222234899999999999999999999889999999999999999999999999999999999


Q ss_pred             HHHhhcccCCCccccC-cceEeeCCCCCCchhhHhHHHHHHhhhHHHHHhcCCccccCCcHHHHHHhhcCCC--CCCccc
Q 001688          724 TRAAFDVQYGLFKETS-DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYN--YLNDLP  800 (1028)
Q Consensus       724 ~~~~f~p~~~lF~~~~-~~~l~pnp~~~~~~~~~l~~f~fiG~llG~al~~~~~l~l~f~~~f~k~Llg~~~--~l~DL~  800 (1028)
                      .|.+|||++|||..|+ |..+||+|+++ .+++|+++|+|+|||+|||+|+|+++|+||+++|+.+++|...  .+|+|+
T Consensus       770 iKkvFdp~lnLFstTs~d~~LyPSPts~-~~en~lqlfeFvGrmlGKAvYEGIvvDv~fa~vflsqlLG~~~~s~~DELs  848 (1096)
T KOG4427|consen  770 IKKVFDPELNLFSTTSTDRRLYPSPTSY-HHENHLQLFEFVGRMLGKAVYEGIVVDVPFASVFLSQLLGRHSLSFIDELS  848 (1096)
T ss_pred             HHHHhcccccccccCCCCceecCCchhh-hhhchhHHHHHHHHHHHHHHhcceEEecccHHHHHHHHhcccchhhhhhcc
Confidence            9999999999999998 89999999998 7899999999999999999999999999999999999999987  899999


Q ss_pred             CCChhhHHHHHHHhhcccccccceeeEEEEeccCCcceeEeccCCCcccccchhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001688          801 SLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFL  880 (1028)
Q Consensus       801 ~~Dp~l~~~L~~L~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~~q~~af~  880 (1028)
                      ++|||+|+||.++|+|+||+.||+|+|++++|..|+..++||+|||+.++||++||.+|||.|++|+++++|++|+.||.
T Consensus       849 ~LDpElYrnLtfvKhYdgd~~dL~LtfSvdedfmGkis~~eL~PgGkt~sVtneNKi~YIH~MA~~rmnrqi~eqt~Af~  928 (1096)
T KOG4427|consen  849 SLDPELYRNLTFVKHYDGDLKDLCLTFSVDEDFMGKISTIELKPGGKTISVTNENKIQYIHAMAHFRMNRQIVEQTNAFY  928 (1096)
T ss_pred             ccCHHHHhhhhHHHhhcccHhhheeeeEechhhccceeEEEeccCCcceeccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHhchhhhhcCCCHHHHHHhhcCCCCCCCHHHHhhcceeCCCCCCCcHHHHHHHHHHh-hCCHHHHHhhceeecCcC
Q 001688          881 RGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLK-SFSLENQKKFLKFVTGCS  959 (1028)
Q Consensus       881 ~Gf~~vip~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~-~~s~eer~~fL~FvTG~s  959 (1028)
                      +||.++|.|+||++|+|.|||.||+|...+||++||++||+|.|||+.+|++|+|||+|++ +|++|||+.||||||+||
T Consensus       929 rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCS 1008 (1096)
T KOG4427|consen  929 RGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCS 1008 (1096)
T ss_pred             HHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999 599999999999999999


Q ss_pred             CCCCCCcccCCCceEEecCCCCC-------------------CCcCCCCCceeecccCeeccCCCCCHHHHHHHHHHHHH
Q 001688          960 RGPLLGFKYLEPLFCIQRAAGSA-------------------SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN 1020 (1028)
Q Consensus       960 r~P~~Gf~~L~p~f~I~~~~~~~-------------------~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~ 1020 (1028)
                      |+|+.||++|+|||.|+++..+.                   .+++.+||||||||||+||||+|+.+.+|||||+|||+
T Consensus      1009 rpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLKLPnY~kkStlreKLrYAIs 1088 (1096)
T KOG4427|consen 1009 RPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLKLPNYKKKSTLREKLRYAIS 1088 (1096)
T ss_pred             CCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhhCCCcchhHHHHHHHHHHhh
Confidence            99999999999999999654211                   14688999999999999999999999999999999999


Q ss_pred             cCCCccCC
Q 001688         1021 AEAGFDLS 1028 (1028)
Q Consensus      1021 ~~~GF~Ls 1028 (1028)
                      +|+|||||
T Consensus      1089 sntGFELS 1096 (1096)
T KOG4427|consen 1089 SNTGFELS 1096 (1096)
T ss_pred             cCCCcccC
Confidence            99999998

>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939 consensus E3 ubiquitin-protein ligase/Putative upstream regulatory element binding protein [Posttranslational modification, protein turnover, chaperones; Transcription] Back     alignment and domain information
>KOG0170 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1028
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 2e-48
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 4e-47
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 8e-45
3jvz_C385 E2~ubiquitin-Hect Length = 385 8e-44
3jw0_C385 E2~ubiquitin-Hect Length = 385 1e-43
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 8e-43
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 2e-42
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 1e-41
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 6e-40
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 3e-38
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 7e-38
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (484), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 203/407 (49%), Gaps = 22/407 (5%)
Query: 628  EILKQAPFLVPFTSRAKIFQSQLASVRQ--RHGSHGVFTRSRFRIRRDHILEDAYSQMST 685
            E+L Q P +  F  + K F+ +L  + +  R     V       +RRDH+ ED+Y ++  
Sbjct: 15   EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDMAV------HVRRDHVFEDSYRELHR 67
Query: 686  MSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKET-SDHLLY 744
             S E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +  D + Y
Sbjct: 68   KSPEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTY 122
Query: 745  PNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDP 804
                S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D 
Sbjct: 123  TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDY 182
Query: 805  ELYRHLIFLKHYEADISEL--ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHL 862
              Y+ L++L   E D+S L  +L F     E+G     +L P G NI VT EN   ++HL
Sbjct: 183  HFYQGLVYL--LENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHL 240
Query: 863  VSNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHEXXXXXXXXXXXXXXXXXRQNTNY 922
            V   R+   IR+Q + FL GF ++I K  I +F E E                 + NT Y
Sbjct: 241  VCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQE-LELLISGLPTIDIDDLKSNTEY 299
Query: 923  VGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSA 982
               Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+     
Sbjct: 300  -HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHR 358
Query: 983  SEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAIN-AEAGFDLS 1028
             + + DRLP++ TC N L LP Y S E++   LL AI  A  GF L+
Sbjct: 359  DDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1028
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-170
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-163
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-158
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 1e-156
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-156
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 1e-149
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 9e-42
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
 Score =  502 bits (1296), Expect = e-170
 Identities = 137/404 (33%), Positives = 209/404 (51%), Gaps = 16/404 (3%)

Query: 628  EILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS 687
            E+L Q P +  F  + K F+ +L  + +      +       +RRDH+ ED+Y ++   S
Sbjct: 15   EVLFQGPHM-DFDVKRKYFRQELERLDEGLRKEDM----AVHVRRDHVFEDSYRELHRKS 69

Query: 688  EEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD--HLLYP 745
             E+++  + + F  E      G D GG+ +++   I+R  F+  Y LF+ +         
Sbjct: 70   PEEMKNRLYIVFEGE-----EGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTI 124

Query: 746  NPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPE 805
            NP S   +  HL +F F+G ++AKA+++  L++  F   F   +  K     D+ S D  
Sbjct: 125  NPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYH 183

Query: 806  LYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSN 865
             Y+ L++L   +      +L F     E+G     +L P G NI VT EN   ++HLV  
Sbjct: 184  FYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ 243

Query: 866  HRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGG 925
             R+   IR+Q + FL GF ++I K  I +F E EL+LLISG    +D DDL+ NT Y   
Sbjct: 244  MRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPT-IDIDDLKSNTEY-HK 301

Query: 926  YHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEE 985
            Y S    I+ FW  L+SF   ++ KFL+FVTG S+ PL GF  LE +  IQ+      + 
Sbjct: 302  YQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR 361

Query: 986  ALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA-GFDLS 1028
            + DRLP++ TC N L LP Y S E++   LL AI   + GF L+
Sbjct: 362  STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA 405
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1028
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-101
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 3e-94
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  319 bits (819), Expect = e-101
 Identities = 121/382 (31%), Positives = 196/382 (51%), Gaps = 21/382 (5%)

Query: 646  FQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGV 705
            F+ +LA  R    S+ + +  +  + R  + ED++ Q+  +   DLR  + V F  E   
Sbjct: 4    FRWKLAHFRYLCQSNALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRGE--- 60

Query: 706  EEAGIDGGGIFKDFMENITRAAFDVQYGLFKET--SDHLLYPNPGSGMIHEQHLQFFHFL 763
               G+D GG+ +++   ++    +  Y LF+    +++ L  NP S  I+  HL +F F+
Sbjct: 61   --EGLDYGGLAREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAS-TINPDHLSYFCFI 117

Query: 764  GILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISEL 823
            G  +A A+F G  +D  F+  F  ++  K   + DL S+D E Y  LI+++    +   L
Sbjct: 118  GRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIEECGL 177

Query: 824  ELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGF 883
            E+YF +     G+ T  +L  GG NI VT EN   +I L++  R +  +++Q+  FL GF
Sbjct: 178  EMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGF 237

Query: 884  QQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 943
             +++   W+  F+E EL++++ G  + +D  D ++NT Y   Y      I  FW+ +K  
Sbjct: 238  NEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKET 295

Query: 944  SLENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMN 998
              E + + L+FVTG  R PL GF  L        FCI++            LP S TC N
Sbjct: 296  DNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQKFCIEKVGKD------TWLPRSHTCFN 349

Query: 999  LLKLPPYRSKEQMSTKLLYAIN 1020
             L LPPY+S EQ+  KLL+AI 
Sbjct: 350  RLDLPPYKSYEQLKEKLLFAIE 371
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1028
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 94.89
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 94.64
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 93.83
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 91.1
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 88.98
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=655.67  Aligned_cols=365  Identities=33%  Similarity=0.596  Sum_probs=337.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf             3610118999999999998419999875-511898087458999998647990001572799998336753344357884
Q 001688          637 VPFTSRAKIFQSQLASVRQRHGSHGVFT-RSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGI  715 (1028)
Q Consensus       637 ~pf~~rv~~f~~~i~~~~~~~~~~~~~~-~~~i~VrR~~i~eda~~~l~~~~~~~lk~~l~V~F~~e~g~~E~GiD~GG~  715 (1028)
                      ++|+.|...|+......        ... ..+|+|||+++++|+++++...++.+++++++|+|+|     |+|+|+|||
T Consensus         2 ~~~~~~~~~f~~~~~~~--------~~~~~~~i~V~R~~l~~d~~~~l~~~~~~~l~~~l~V~F~g-----E~g~D~GG~   68 (374)
T d1nd7a_           2 MGFRWKLAHFRYLCQSN--------ALPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGL   68 (374)
T ss_dssp             CTHHHHHHHHHHHHHHT--------CCSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHH
T ss_pred             CCHHHHHHHHHHHHHHC--------CCCCCEEEEECCCCHHHHHHHHHHHCCHHHHCCCEEEEECC-----CCCCCCCCC
T ss_conf             63789999999887616--------89885599976565899999999716989847876999789-----874478711


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             39999999999633358974335740--1742999988614576799987455777876397026677198999741689
Q 001688          716 FKDFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKY  793 (1028)
Q Consensus       716 ~rEf~~~l~~~~f~p~~glF~~~~~~--~l~pnp~~~~~~~~~l~~f~fiG~llGkal~~g~~i~l~f~~~f~k~Llg~~  793 (1028)
                      +||||+++++++++|++|+|..++++  .++|||.+. ..++++++|+|+|+++|+||++|.+++++|+++|||+|+|++
T Consensus        69 ~rEff~~l~~el~~p~~~lf~~~~~~~~~~~~~p~~~-~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~  147 (374)
T d1nd7a_          69 AREWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKK  147 (374)
T ss_dssp             HHHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC
T ss_conf             9999999999980886687566479885535587443-680589999885799999998496138775689998854998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99896667896657888988601464333201389980557850147435999542135111999999999999838799
Q 001688          794 NYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIR  873 (1028)
Q Consensus       794 ~~l~DL~~~Dp~l~~~L~~l~~~~~dv~~l~L~Ft~~~~~~g~~~~~eL~p~G~~i~VT~~Nk~eYI~~~~~~~l~~~i~  873 (1028)
                      ++++||+++||++|++|.++++++.+..+++++|++..+.+|...++||+|||++++||.+|+.+||+++++|+++++++
T Consensus       148 ~t~~DL~~iD~~~~~sl~~l~~~~~e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~~l~~~~~  227 (374)
T d1nd7a_         148 LTIKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQ  227 (374)
T ss_dssp             CCHHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTH
T ss_pred             CCHHHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             98999988578988749999854641046603578775127874225447899765206878999999999999721178


Q ss_pred             HHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHHCCEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHCE
Q ss_conf             99999999885833013320799999988214888877978873404407988898689999999995099999976220
Q 001688          874 QQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLK  953 (1028)
Q Consensus       874 ~q~~af~~Gf~~vi~~~~l~~F~~~EL~~li~G~~~~id~~dl~~~t~y~ggy~~~~~~i~~FW~vl~~~s~eer~~fL~  953 (1028)
                      .|++||++||++|+|..++++|+|+||+.++||.++ +|+++|+++|.|. ||+++|++|+|||+++++|++|+|++||+
T Consensus       228 ~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~-id~~~l~~~~~y~-gy~~~s~~i~~fw~vl~~~t~ee~~~fL~  305 (374)
T d1nd7a_         228 EQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYR-HYTRNSKQIIWFWQFVKETDNEVRMRLLQ  305 (374)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHCCCCC-CCHHHHHHHEEEC-CCCCCCHHHHHHHHHHHHCCHHHHHHHHE
T ss_conf             999999986987679898764889999986279987-7889996432613-67899889999999877069999987446


Q ss_pred             EECCCCCCCCCCCCCCC-----CCEEEECCCCCCCCCCCCCCCEEECCCCEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             01476777889855678-----81688517899899679999632054481214799999999999999997199
Q 001688          954 FVTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 1023 (1028)
Q Consensus       954 FvTG~sr~P~~Gf~~l~-----p~f~I~~~~~~~~~~~~~~LPtA~TCfn~L~LP~Y~s~e~l~ekL~~AI~~~~ 1023 (1028)
                      |+||++|+|++||+.+.     ++|+|++.+      ++++||+||||||.|+||.|+|+++|++||++||++++
T Consensus       306 FvTGs~rlP~~G~~~l~~~~~~~~~~i~~~~------~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~e  374 (374)
T d1nd7a_         306 FVTGTCRLPLGGFAELMGSNGPQKFCIEKVG------KDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE  374 (374)
T ss_dssp             HHHSCSCCCTTCGGGCEETTEECCEEEECCS------CTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred             EECCCCCCCCCCHHHHCCCCCCCCEEECCCC------CCCCCCCHHHHHCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             6368998898645654356788751314689------99999705440267669898899999999999997149
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure