Citrus Sinensis ID: 001693
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1027 | 2.2.26 [Sep-21-2011] | |||||||
| Q6S001 | 685 | Kinesin-related protein 1 | yes | no | 0.327 | 0.490 | 0.432 | 7e-73 | |
| Q54NP8 | 1922 | Kinesin-related protein 4 | no | no | 0.337 | 0.180 | 0.415 | 2e-71 | |
| Q02224 | 2701 | Centromere-associated pro | yes | no | 0.350 | 0.133 | 0.414 | 5e-71 | |
| Q6RT24 | 2474 | Centromere-associated pro | yes | no | 0.333 | 0.138 | 0.439 | 1e-70 | |
| P46869 | 786 | Kinesin-like protein FLA1 | N/A | no | 0.345 | 0.451 | 0.366 | 4e-61 | |
| Q9P2E2 | 1029 | Kinesin-like protein KIF1 | no | no | 0.336 | 0.336 | 0.379 | 5e-59 | |
| O15066 | 747 | Kinesin-like protein KIF3 | no | no | 0.340 | 0.468 | 0.367 | 1e-58 | |
| Q61771 | 747 | Kinesin-like protein KIF3 | no | no | 0.338 | 0.465 | 0.360 | 2e-58 | |
| P46871 | 742 | Kinesin-II 95 kDa subunit | no | no | 0.345 | 0.478 | 0.354 | 5e-58 | |
| P46872 | 699 | Kinesin-II 85 kDa subunit | no | no | 0.342 | 0.503 | 0.354 | 9e-57 |
| >sp|Q6S001|KIF11_DICDI Kinesin-related protein 11 OS=Dictyostelium discoideum GN=kif11 PE=3 SV=1 | Back alignment and function desciption |
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Score = 276 bits (706), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 229/361 (63%), Gaps = 25/361 (6%)
Query: 69 SYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIG------- 121
SYT+D +F C +VY+ A+E+ + + G N+S+ AYG TSSGKT+TM G
Sbjct: 116 SYTYDHLFPPTCDNYEVYDTVARELVKSAMEGYNASIMAYGITSSGKTFTMTGSGKKNPG 175
Query: 122 ITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP--LRLLDDPERGTIV 179
I ++ DI+ YI++ KEREF+L+ S +EIYNE+V DLL + L++ + P G V
Sbjct: 176 IIPLSIQDIFTYIQECKEREFLLRVSYLEIYNETVNDLLGVNQENFNLKIHEHPVTGVYV 235
Query: 180 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239
L EE + H+ L+S EA R +G TS N SSRSH I ++ +ES G+
Sbjct: 236 AGLKEEIVLSVEHVLSLISAGEAHRHVGSTSYNLQSSRSHTIFKMIIESKEVLPEGSGSG 295
Query: 240 SL-----TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 294
L +T+N +DLAGSE+AS++ + R KEG +IN+SLLTLGTVI KLS+ G++
Sbjct: 296 GLESPVRYSTLNLIDLAGSEKASESTISAIRNKEGSYINKSLLTLGTVISKLSEKDTGYI 355
Query: 295 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVM 354
P+RDSKLTR+LQ+SL GN+R AIICT++ A ++ E+S NTL FAS AK+++ NA+VN ++
Sbjct: 356 PYRDSKLTRVLQNSLSGNSRVAIICTITLASNNFEESHNTLKFASRAKKISNNAKVNEIL 415
Query: 355 SDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLA 414
DKAL+K + E++ L+++L D++S EK+L+ EKE ++T Q L
Sbjct: 416 DDKALLKQYRNEIAELKSKLS---------DALST--EKELQETLTEKEKMKITNQELLH 464
Query: 415 R 415
+
Sbjct: 465 K 465
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Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q54NP8|KIF4_DICDI Kinesin-related protein 4 OS=Dictyostelium discoideum GN=kif4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2 | Back alignment and function description |
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| >sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1 | Back alignment and function description |
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| >sp|P46869|FLA10_CHLRE Kinesin-like protein FLA10 OS=Chlamydomonas reinhardtii GN=FLA10 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9P2E2|KIF17_HUMAN Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3 | Back alignment and function description |
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| >sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 | Back alignment and function description |
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| >sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 | Back alignment and function description |
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| >sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1027 | ||||||
| 297735041 | 973 | unnamed protein product [Vitis vinifera] | 0.913 | 0.964 | 0.571 | 0.0 | |
| 359476842 | 960 | PREDICTED: uncharacterized protein LOC10 | 0.900 | 0.963 | 0.573 | 0.0 | |
| 255581406 | 959 | conserved hypothetical protein [Ricinus | 0.925 | 0.991 | 0.566 | 0.0 | |
| 356495368 | 966 | PREDICTED: uncharacterized protein LOC10 | 0.933 | 0.992 | 0.550 | 0.0 | |
| 449500027 | 992 | PREDICTED: uncharacterized LOC101218717 | 0.924 | 0.956 | 0.558 | 0.0 | |
| 449457642 | 1000 | PREDICTED: uncharacterized protein LOC10 | 0.924 | 0.949 | 0.554 | 0.0 | |
| 356561169 | 937 | PREDICTED: uncharacterized protein LOC10 | 0.891 | 0.977 | 0.537 | 0.0 | |
| 356502134 | 949 | PREDICTED: uncharacterized protein LOC10 | 0.900 | 0.974 | 0.531 | 0.0 | |
| 356540801 | 953 | PREDICTED: uncharacterized protein LOC10 | 0.923 | 0.994 | 0.542 | 0.0 | |
| 357483693 | 963 | Kinesin-related protein [Medicago trunca | 0.906 | 0.966 | 0.536 | 0.0 |
| >gi|297735041|emb|CBI17403.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/1038 (57%), Positives = 734/1038 (70%), Gaps = 100/1038 (9%)
Query: 1 MGAAGDEEPMQAQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSV 60
MG+AG EE M+ S G ER+ VSVRLRPLNEKEI+RND DWECIND+TII++N+L +
Sbjct: 1 MGSAGGEEVMRGPSGRG--ERVVVSVRLRPLNEKEISRNDALDWECINDTTIIFKNHLPI 58
Query: 61 AERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMI 120
ERSMYP++YTFDRVF D TTR+VYE GAKEVAL+VVSGINSS+FAYGQTSSGKT+TM
Sbjct: 59 PERSMYPSAYTFDRVFRSDSTTREVYEAGAKEVALSVVSGINSSIFAYGQTSSGKTFTMS 118
Query: 121 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVE 180
GITEYTM+DIYD+IE+HKEREF+LKFSAMEIYNESVRDLLS+DT+PLRLLDDPERGTIVE
Sbjct: 119 GITEYTMADIYDHIERHKEREFLLKFSAMEIYNESVRDLLSSDTAPLRLLDDPERGTIVE 178
Query: 181 KLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSS 240
KLTEETL+DWNHL ELLS CEAQRQIGET+LNETSSRSHQILRLTVESSA EF+GND SS
Sbjct: 179 KLTEETLRDWNHLIELLSLCEAQRQIGETALNETSSRSHQILRLTVESSAREFLGNDNSS 238
Query: 241 -LTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 299
LT+TVNFVDLAGSERASQ+LSAGTRLKEGCHINRSLLTLGTVIRKLSKGR+GH+P+RDS
Sbjct: 239 VLTSTVNFVDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVIRKLSKGRSGHIPYRDS 298
Query: 300 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKAL 359
KLTRILQSSLGGNA+TAIICT+SPARSHVEQSRNTLLFASCAKEVTTNAQVN+VMSDKAL
Sbjct: 299 KLTRILQSSLGGNAKTAIICTMSPARSHVEQSRNTLLFASCAKEVTTNAQVNVVMSDKAL 358
Query: 360 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVE 419
VKHLQREL+RLEN LR P I D+ ++LR+KDL+IEKLEKE+ ELT+QRDLA+++VE
Sbjct: 359 VKHLQRELARLENSLRSPEPTSICLDTATLLRDKDLQIEKLEKELRELTLQRDLAQSQVE 418
Query: 420 NLLRGAGKGSAESPPVVYVDDRPPVVYAGLDHQYPRLRVRSSWDFENLNIET----QNMI 475
+LL G DDR P+++A +D YP+LRVR SW+ EN ET +
Sbjct: 419 DLLGVVG------------DDRLPMIWADMDDHYPKLRVRRSWESENPTSETFALADDQT 466
Query: 476 P------------HCIDISVRSSDTSPCSDGHS--SSDENFFPLPSLEENILKTKCNEQD 521
P D+ +R+ DTS SDG+S SD+++ PLP E+N L +
Sbjct: 467 PASGLRTFALADDQTPDVGLRTCDTSQYSDGNSVDDSDDHYPPLPESEDNFLHNGTSALV 526
Query: 522 EVSVPSFVGTDL--HQEEIEEQNDENA-DVYKNVGCVQMGKGTTGYTDLKKSEPSLNKDR 578
V+ P+ V DL ++IEEQ++ N+ D+ K V C+++ + + D++ + S +D
Sbjct: 527 SVNTPNHVAIDLSSQWDKIEEQSNANSEDLCKEVRCIEI-EHSIMKRDIESNTLSPVRDT 585
Query: 579 DLNMTSVDINPATSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRP 638
D ++++ +G D E S LKE ELN V PS E SPW
Sbjct: 586 D----ALELKVVRNG-------DGANQEFTSPLLKEDKELNCNQRTVVIPSPQEFSPWLL 634
Query: 639 EKYTPTPSILNLTRSRSCKACLMTSYSPDWFENDEKVVSTPPIVFEKDFTGRPRGLEIKV 698
EK + L LTRSRSCKA M S WFE +EK TP VFEKDF GRP G + K+
Sbjct: 635 EKENSSCRSLKLTRSRSCKASFMYCSSSPWFEKEEKDKYTPSNVFEKDFIGRPEGFQKKL 694
Query: 699 SALKYAADTEISSTNESQTSARSSSFDDLKSQNVVTPEVAENIGTSARSSTLDIKSQNVK 758
++L Y + + S QT SSS D LK Q VVT E++
Sbjct: 695 ASLNYDTEIDKLSRKGGQTFRGSSSVDQLKEQ-VVTTSTDEDV----------------- 736
Query: 759 APDDAENTRNSARSPAFADLKSRNNKTPGAAESTSESISVAQMVEMTEPRNEMQPADNVD 818
TS + VA + EM + + E + AD+ +
Sbjct: 737 ---------------------------------TSLNTYVAGLKEMAKFQYEERLADDQE 763
Query: 819 TLLKSGVPAKSVRDIGVDNIQEDFINHWEWPLEFKRLQREIIELWHACNVSLVHRTYFFL 878
+ ++ K+V+D+G+D IQ+D + WP EFKRLQ+EIIELWH+CNVSLVHRTYFFL
Sbjct: 764 SEPEANKSVKNVKDVGLDPIQDDLASPSRWPFEFKRLQKEIIELWHSCNVSLVHRTYFFL 823
Query: 879 LFKGDPKDSIYMEVEQRRLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRERHMLSQHVK 938
LF+GDP DSIYMEVE RRLSFLKD+FSRGN + DG ++ ASS++ALRRER ML + ++
Sbjct: 824 LFQGDPADSIYMEVELRRLSFLKDTFSRGNQTVVDGHALTPASSVRALRREREMLCKQMQ 883
Query: 939 KRFSREQRENLFLKWGIGLQTKHRSLQLAHLLWT-SKDLNHVAESAAIVSKLVTFVKPDQ 997
K+ S ++R +LFLKWG+ L K+R LQLA+ LWT ++D+NH++ESA IV++L FV+P++
Sbjct: 884 KKLSEDERMSLFLKWGVQLNAKNRRLQLAYRLWTDTEDMNHISESANIVARLTRFVQPEE 943
Query: 998 AFREMFGLNFAPRRPNKK 1015
AF+EMFGLNF PRR +++
Sbjct: 944 AFKEMFGLNFTPRRMSRR 961
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476842|ref|XP_003631897.1| PREDICTED: uncharacterized protein LOC100854194 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255581406|ref|XP_002531511.1| conserved hypothetical protein [Ricinus communis] gi|223528864|gb|EEF30865.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356495368|ref|XP_003516550.1| PREDICTED: uncharacterized protein LOC100809766 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449500027|ref|XP_004160983.1| PREDICTED: uncharacterized LOC101218717 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449457642|ref|XP_004146557.1| PREDICTED: uncharacterized protein LOC101218717 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356561169|ref|XP_003548857.1| PREDICTED: uncharacterized protein LOC100775190 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356502134|ref|XP_003519876.1| PREDICTED: uncharacterized protein LOC100785401 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356540801|ref|XP_003538873.1| PREDICTED: uncharacterized protein LOC100802226 [Glycine max] | Back alignment and taxonomy information |
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| >gi|357483693|ref|XP_003612133.1| Kinesin-related protein [Medicago truncatula] gi|355513468|gb|AES95091.1| Kinesin-related protein [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1027 | ||||||
| TAIR|locus:2050115 | 862 | AT2G21300 [Arabidopsis thalian | 0.409 | 0.488 | 0.690 | 7.6e-219 | |
| TAIR|locus:2120272 | 836 | AT4G38950 [Arabidopsis thalian | 0.390 | 0.479 | 0.705 | 1.3e-200 | |
| TAIR|locus:2135006 | 1004 | AT4G24170 [Arabidopsis thalian | 0.921 | 0.942 | 0.442 | 1.5e-184 | |
| TAIR|locus:2155051 | 1063 | AT5G66310 [Arabidopsis thalian | 0.722 | 0.698 | 0.517 | 1.7e-176 | |
| UNIPROTKB|Q8S950 | 959 | nack1 "Kinesin-like protein NA | 0.394 | 0.422 | 0.604 | 1.2e-165 | |
| TAIR|locus:2014069 | 974 | HIK "HINKEL" [Arabidopsis thal | 0.377 | 0.398 | 0.6 | 2.2e-163 | |
| TAIR|locus:2084701 | 938 | TES "TETRASPORE" [Arabidopsis | 0.394 | 0.431 | 0.583 | 3.9e-155 | |
| TAIR|locus:2162351 | 1087 | AT5G42490 [Arabidopsis thalian | 0.263 | 0.249 | 0.692 | 3e-154 | |
| DICTYBASE|DDB_G0291039 | 685 | kif11 "kinesin-7" [Dictyosteli | 0.340 | 0.510 | 0.428 | 1.7e-73 | |
| TAIR|locus:2050044 | 1058 | AT2G21380 [Arabidopsis thalian | 0.333 | 0.323 | 0.430 | 9.3e-70 |
| TAIR|locus:2050115 AT2G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1503 (534.1 bits), Expect = 7.6e-219, Sum P(4) = 7.6e-219
Identities = 295/427 (69%), Positives = 360/427 (84%)
Query: 1 MGA-AGDE-EPMQ-AQSQSGCPERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNN 57
MGA AG+E + M+ Q E+I V VRLRPLNEKEI N+ +DWECIND+T++YRN
Sbjct: 1 MGAIAGEELKKMEKTQVHVAREEKILVLVRLRPLNEKEILANEAADWECINDTTVLYRNT 60
Query: 58 LSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTY 117
L E S +P++Y+FDRV+ +C TR+VYE+G KEVAL+VV GINSS+FAYGQTSSGKTY
Sbjct: 61 LR--EGSTFPSAYSFDRVYRGECPTRQVYEDGPKEVALSVVKGINSSIFAYGQTSSGKTY 118
Query: 118 TMIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGT 177
TM GITE+ ++DI+DYI KH++R FV+KFSA+EIYNE++RDLLS D++PLRL DDPE+G
Sbjct: 119 TMSGITEFAVADIFDYIFKHEDRAFVVKFSAIEIYNEAIRDLLSPDSTPLRLRDDPEKGA 178
Query: 178 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGND 237
VEK TEETL+DWNHLKEL+S CEAQR+IGETSLNE SSRSHQI++LTVESSA EF+G +
Sbjct: 179 AVEKATEETLRDWNHLKELISVCEAQRKIGETSLNERSSRSHQIIKLTVESSAREFLGKE 238
Query: 238 PSS-LTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 296
S+ L A+VNF+DLAGSERASQALSAG RLKEGCHINRSLLTLGTVIRKLS GR GH+ +
Sbjct: 239 NSTTLMASVNFIDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGRQGHINY 298
Query: 297 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD 356
RDSKLTRILQ LGGNARTAI+CTLSPARSHVEQ+RNTLLFA CAKEVTT AQ+N+VMSD
Sbjct: 299 RDSKLTRILQPCLGGNARTAIVCTLSPARSHVEQTRNTLLFACCAKEVTTKAQINVVMSD 358
Query: 357 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLART 416
KALVK LQREL+RLE+ELR P + D LR+KDL+I+K+EK++ E+T QRD+A++
Sbjct: 359 KALVKQLQRELARLESELRNPAPATSSCDCGVTLRKKDLQIQKMEKQLAEMTKQRDIAQS 418
Query: 417 EVENLLR 423
+E+ ++
Sbjct: 419 RLEDFMK 425
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| TAIR|locus:2120272 AT4G38950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2135006 AT4G24170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2155051 AT5G66310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8S950 nack1 "Kinesin-like protein NACK1" [Nicotiana tabacum (taxid:4097)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014069 HIK "HINKEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2084701 TES "TETRASPORE" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2162351 AT5G42490 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0291039 kif11 "kinesin-7" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| TAIR|locus:2050044 AT2G21380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036821001 | SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (922 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1027 | |||
| cd01374 | 321 | cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E | 1e-152 | |
| pfam00225 | 326 | pfam00225, Kinesin, Kinesin motor domain | 1e-122 | |
| smart00129 | 335 | smart00129, KISc, Kinesin motor, catalytic domain | 1e-119 | |
| cd00106 | 328 | cd00106, KISc, Kinesin motor domain | 1e-102 | |
| cd01370 | 338 | cd01370, KISc_KIP3_like, Kinesin motor domain, KIP | 4e-91 | |
| cd01369 | 325 | cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine | 2e-86 | |
| pfam11995 | 162 | pfam11995, DUF3490, Domain of unknown function (DU | 2e-86 | |
| cd01365 | 356 | cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K | 4e-84 | |
| cd01372 | 341 | cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik | 1e-79 | |
| cd01371 | 333 | cd01371, KISc_KIF3, Kinesin motor domain, kinesins | 2e-79 | |
| cd01366 | 329 | cd01366, KISc_C_terminal, Kinesin motor domain, KI | 6e-79 | |
| cd01364 | 352 | cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC | 6e-76 | |
| cd01367 | 322 | cd01367, KISc_KIF2_like, Kinesin motor domain, KIF | 2e-72 | |
| COG5059 | 568 | COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | 5e-65 | |
| cd01373 | 337 | cd01373, KISc_KLP2_like, Kinesin motor domain, KLP | 5e-64 | |
| cd01375 | 334 | cd01375, KISc_KIF9_like, Kinesin motor domain, KIF | 2e-60 | |
| cd01376 | 319 | cd01376, KISc_KID_like, Kinesin motor domain, KIF2 | 1e-58 | |
| PLN03188 | 1320 | PLN03188, PLN03188, kinesin-12 family protein; Pro | 1e-55 | |
| cd01368 | 345 | cd01368, KISc_KIF23_like, Kinesin motor domain, KI | 4e-50 | |
| cd01363 | 186 | cd01363, Motor_domain, Myosin and Kinesin motor do | 4e-31 |
| >gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
Score = 454 bits (1169), Expect = e-152
Identities = 171/330 (51%), Positives = 217/330 (65%), Gaps = 17/330 (5%)
Query: 22 IFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCT 81
I VSVR+RPLN +E N+ W ND+TI S S+TFDRVF + T
Sbjct: 2 IKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEE-------STPGQSFTFDRVFGGEST 53
Query: 82 TRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM------IGITEYTMSDIYDYIE 135
R+VYE AK V + + G N ++FAYGQTSSGKT+TM GI + DI+ I+
Sbjct: 54 NREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQ 113
Query: 136 KHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKE 195
+REF+L+ S +EIYNE ++DLLS LR+ +DP +G +V LTEE + HL +
Sbjct: 114 DTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQ 173
Query: 196 LLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSER 255
L++ E R +GET NE SSRSH I +LT+ES + + +T+N +DLAGSER
Sbjct: 174 LIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRV-STLNLIDLAGSER 232
Query: 256 ASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRN-GHVPFRDSKLTRILQSSLGGNAR 314
ASQ AG R KEG IN+SLLTLGTVI KLS+G+N GH+P+RDSKLTRILQ SL GNAR
Sbjct: 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNAR 291
Query: 315 TAIICTLSPARSHVEQSRNTLLFASCAKEV 344
TAIICT+SPA SHVE++ NTL FAS AK+V
Sbjct: 292 TAIICTISPASSHVEETLNTLKFASRAKKV 321
|
This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321 |
| >gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|238054 cd00106, KISc, Kinesin motor domain | Back alignment and domain information |
|---|
| >gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|221365 pfam11995, DUF3490, Domain of unknown function (DUF3490) | Back alignment and domain information |
|---|
| >gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1027 | |||
| KOG0245 | 1221 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0242 | 675 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0243 | 1041 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| PF11995 | 161 | DUF3490: Domain of unknown function (DUF3490); Int | 100.0 | |
| KOG4280 | 574 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0240 | 607 | consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | 100.0 | |
| PLN03188 | 1320 | kinesin-12 family protein; Provisional | 100.0 | |
| cd01370 | 338 | KISc_KIP3_like Kinesin motor domain, KIP3-like sub | 100.0 | |
| KOG0241 | 1714 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01373 | 337 | KISc_KLP2_like Kinesin motor domain, KLP2-like sub | 100.0 | |
| cd01368 | 345 | KISc_KIF23_like Kinesin motor domain, KIF23-like s | 100.0 | |
| cd01365 | 356 | KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p | 100.0 | |
| cd01367 | 322 | KISc_KIF2_like Kinesin motor domain, KIF2-like gro | 100.0 | |
| cd01371 | 333 | KISc_KIF3 Kinesin motor domain, kinesins II or KIF | 100.0 | |
| cd01364 | 352 | KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind | 100.0 | |
| cd01374 | 321 | KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like | 100.0 | |
| cd01369 | 325 | KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy | 100.0 | |
| cd01376 | 319 | KISc_KID_like Kinesin motor domain, KIF22/Kid-like | 100.0 | |
| cd01372 | 341 | KISc_KIF4 Kinesin motor domain, KIF4-like subfamil | 100.0 | |
| cd01375 | 334 | KISc_KIF9_like Kinesin motor domain, KIF9-like sub | 100.0 | |
| cd01366 | 329 | KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ | 100.0 | |
| smart00129 | 335 | KISc Kinesin motor, catalytic domain. ATPase. Micr | 100.0 | |
| cd00106 | 328 | KISc Kinesin motor domain. This catalytic (head) d | 100.0 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 100.0 | |
| KOG0239 | 670 | consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | 100.0 | |
| KOG0246 | 676 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0244 | 913 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| KOG0247 | 809 | consensus Kinesin-like protein [Cytoskeleton] | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 100.0 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 100.0 | |
| COG5059 | 568 | KIP1 Kinesin-like protein [Cytoskeleton] | 97.68 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 94.08 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 92.34 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 91.32 | |
| PRK06620 | 214 | hypothetical protein; Validated | 88.76 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 87.68 | |
| PRK12377 | 248 | putative replication protein; Provisional | 87.66 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 87.48 | |
| PRK08116 | 268 | hypothetical protein; Validated | 85.92 | |
| PRK06526 | 254 | transposase; Provisional | 85.38 | |
| PRK09087 | 226 | hypothetical protein; Validated | 84.7 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 84.64 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 84.64 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 84.41 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 83.98 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.94 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 83.86 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 83.61 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 82.95 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 82.75 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 82.59 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 82.51 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 82.4 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 80.81 |
| >KOG0245 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=783.20 Aligned_cols=357 Identities=36% Similarity=0.551 Sum_probs=326.3
Q ss_pred CCCeEEEEEeCCCChhhhhcCCCcceEeeCCCEEEecCCcccccCCcCCceeecceeeCCC-------CChhhHHHhhHH
Q 001693 19 PERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD-------CTTRKVYEEGAK 91 (1027)
Q Consensus 19 ~e~I~V~VRVRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~sF~FD~VF~~~-------asQeeVYe~~v~ 91 (1027)
...|+|+|||||||.+|..+...+++.+.+..+.+.++... .....|+||+.||.. ++|.+||+.++.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~-----k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~ 77 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS-----KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGR 77 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc-----ccCCceecceeeecCCCCCCchhhHHHHHHHHhH
Confidence 34699999999999999999888888888777666654321 123359999999864 689999999999
Q ss_pred HHHHHHhcCCCeeEEEecccCCCCccccc--------CChhhHHHHHHHHHHhcc--ccceeEeeeeeEeeccccccccC
Q 001693 92 EVALAVVSGINSSVFAYGQTSSGKTYTMI--------GITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLS 161 (1027)
Q Consensus 92 plV~svL~G~NatIfAYGQTGSGKTyTM~--------GIi~rav~dLF~~Ie~~~--e~~f~V~vS~lEIYnE~V~DLL~ 161 (1027)
++++++++|||+||||||||||||||||+ ||||+++++||.+|...+ +..|.|.|||||||||+|+|||+
T Consensus 78 ~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~ 157 (1221)
T KOG0245|consen 78 EMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLN 157 (1221)
T ss_pred HHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhh
Confidence 99999999999999999999999999998 699999999999998654 56899999999999999999999
Q ss_pred -CC-CCCceeecCCCCCeEecCCeeEEecCHHHHHHHHHHhhhhhccccccCCCcCCCceeEEEEEEEeecccccCCCCc
Q 001693 162 -AD-TSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 239 (1027)
Q Consensus 162 -~~-~~~L~i~ed~~~g~~V~gLtev~V~S~ee~~~LL~~g~~~R~~~sT~~N~~SSRSH~IftI~Ve~~~~e~~g~~~s 239 (1027)
+. +.+|+++++|..|+||++|+.+.|.|+.++..++..|+++|++++|+||++|||||+||+|++.+...+..++..+
T Consensus 158 ~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~s 237 (1221)
T KOG0245|consen 158 APKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDS 237 (1221)
T ss_pred CCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcc
Confidence 44 3589999999999999999999999999999999999999999999999999999999999999987766665566
Q ss_pred ceeeeEEEEecCCCccccccccchhhhhhhhhhhhhHHHHHHHHHHhcCC------CCCccccCCchhhhhhhhccCCCc
Q 001693 240 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG------RNGHVPFRDSKLTRILQSSLGGNA 313 (1027)
Q Consensus 240 ~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL~aLg~VI~aLs~~------k~~hIPYRDSKLTrLLqdSLGGNs 313 (1027)
..+|+|+|||||||||++.+++.|+|+|||.+||+||+|||+||.||++. ++.+||||||.|||||+++||||+
T Consensus 238 ek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNS 317 (1221)
T KOG0245|consen 238 EKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNS 317 (1221)
T ss_pred eeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcc
Confidence 88999999999999999999999999999999999999999999999742 345999999999999999999999
Q ss_pred cceeeeecCCCCcchHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001693 314 RTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVF 381 (1027)
Q Consensus 314 kT~mIatISPs~~~~eETlsTLrFAsRAK~Ikn~~~vN~~~s~kalik~Lq~Ei~~Le~eL~~~~~~~ 381 (1027)
||+|||+|||+..||+|||+|||||+|||+|+|+|+||+.+..+ +|++|++|+.+|+..|+..+...
T Consensus 318 KTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~ 384 (1221)
T KOG0245|consen 318 KTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGD 384 (1221)
T ss_pred hhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999998776 89999999999999998877554
|
|
| >KOG0242 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0243 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG4280 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03188 kinesin-12 family protein; Provisional | Back alignment and domain information |
|---|
| >cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup | Back alignment and domain information |
|---|
| >KOG0241 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup | Back alignment and domain information |
|---|
| >cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup | Back alignment and domain information |
|---|
| >cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins | Back alignment and domain information |
|---|
| >cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group | Back alignment and domain information |
|---|
| >cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins | Back alignment and domain information |
|---|
| >cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division | Back alignment and domain information |
|---|
| >cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis | Back alignment and domain information |
|---|
| >cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup | Back alignment and domain information |
|---|
| >cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup | Back alignment and domain information |
|---|
| >cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily | Back alignment and domain information |
|---|
| >cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling | Back alignment and domain information |
|---|
| >cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins | Back alignment and domain information |
|---|
| >smart00129 KISc Kinesin motor, catalytic domain | Back alignment and domain information |
|---|
| >cd00106 KISc Kinesin motor domain | Back alignment and domain information |
|---|
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
| >KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0246 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0244 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0247 consensus Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
| >COG5059 KIP1 Kinesin-like protein [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1027 | ||||
| 1t5c_A | 349 | Crystal Structure Of The Motor Domain Of Human Kine | 2e-68 | ||
| 3b6u_A | 372 | Crystal Structure Of The Motor Domain Of Human Kine | 1e-57 | ||
| 2y5w_A | 365 | Crystal Structure Of Drosophila Melanogaster Kinesi | 7e-53 | ||
| 1mkj_A | 349 | Human Kinesin Motor Domain With Docked Neck Linker | 1e-51 | ||
| 4atx_C | 340 | Rigor Kinesin Motor Domain With An Ordered Neck-Lin | 4e-51 | ||
| 2vvg_A | 350 | Crystal Structure Of The G.Intestinalis Kinesin 2 G | 6e-51 | ||
| 3b6v_A | 395 | Crystal Structure Of The Motor Domain Of Human Kine | 7e-51 | ||
| 1bg2_A | 325 | Human Ubiquitous Kinesin Motor Domain Length = 325 | 9e-51 | ||
| 4aqv_C | 373 | Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma | 2e-49 | ||
| 4ap0_A | 370 | The Mitotic Kinesin Eg5 In Complex With Mg-Adp And | 4e-49 | ||
| 3hqd_A | 369 | Human Kinesin Eg5 Motor Domain In Complex With Ampp | 2e-48 | ||
| 1x88_A | 359 | Human Eg5 Motor Domain Bound To Mg-Adp And Monastro | 2e-48 | ||
| 4a1z_A | 368 | Eg5-1 Length = 368 | 2e-48 | ||
| 1ii6_A | 368 | Crystal Structure Of The Mitotic Kinesin Eg5 In Com | 2e-48 | ||
| 2wbe_C | 373 | Kinesin-5-Tubulin Complex With Amppnp Length = 373 | 2e-48 | ||
| 1q0b_A | 367 | Crystal Structure Of The Motor Protein Ksp In Compl | 3e-48 | ||
| 4a28_A | 368 | Eg5-2 Length = 368 | 5e-48 | ||
| 1goj_A | 355 | Structure Of A Fast Kinesin: Implications For Atpas | 6e-48 | ||
| 3lre_A | 355 | Crystal Structure Analysis Of Human Kinesin-8 Motor | 3e-47 | ||
| 1sdm_A | 369 | Crystal Structure Of Kinesin-Like Calmodulin Bindin | 3e-47 | ||
| 3zcw_A | 348 | Eg5 - New Allosteric Binding Site Length = 348 | 4e-47 | ||
| 1ia0_K | 394 | Kif1a Head-Microtubule Complex Structure In Atp-For | 4e-47 | ||
| 1i5s_A | 367 | Crystal Structure Of The Kif1a Motor Domain Complex | 7e-47 | ||
| 1i6i_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-46 | ||
| 1vfv_A | 366 | Crystal Structure Of The Kif1a Motor Domain Complex | 1e-46 | ||
| 3gbj_A | 354 | Crystal Structure Of The Motor Domain Of Kinesin Ki | 1e-46 | ||
| 4a14_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 1e-45 | ||
| 3h4s_A | 386 | Structure Of The Complex Of A Mitotic Kinesin With | 5e-45 | ||
| 2h58_A | 330 | Crystal Structure Of The Kifc3 Motor Domain In Comp | 6e-43 | ||
| 2xt3_A | 344 | Human Kif7, A Kinesin Involved In Hedgehog Signalli | 2e-42 | ||
| 2owm_A | 443 | Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 | 2e-40 | ||
| 3u06_A | 412 | Crystal Structure Of The Kinesin-14 Ncdg347d Length | 7e-39 | ||
| 2ncd_A | 420 | Ncd (Non-Claret Disjunctional) Dimer From D. Melano | 7e-39 | ||
| 1cz7_A | 406 | The Crystal Structure Of A Minus-End Directed Micro | 8e-39 | ||
| 3l1c_A | 383 | Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | 2e-38 | ||
| 1n6m_A | 409 | Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY | 4e-38 | ||
| 4gkr_A | 371 | Structure Of The C-Terminal Motor Domain Of Kar3 Fr | 1e-37 | ||
| 3bfn_A | 388 | Crystal Structure Of The Motor Domain Of Human Kine | 4e-37 | ||
| 3nwn_A | 359 | Crystal Structure Of The Human Kif9 Motor Domain In | 2e-36 | ||
| 4etp_A | 403 | C-Terminal Motor And Motor Homology Domain Of Kar3v | 2e-36 | ||
| 4h1g_A | 715 | Structure Of Candida Albicans Kar3 Motor Domain Fus | 6e-36 | ||
| 3t0q_A | 349 | Motor Domain Structure Of The Kar3-Like Kinesin Fro | 5e-35 | ||
| 2gry_A | 420 | Crystal Structure Of The Human Kif2 Motor Domain In | 6e-35 | ||
| 3kar_A | 346 | The Motor Domain Of Kinesin-Like Protein Kar3, A Sa | 7e-35 | ||
| 1f9t_A | 358 | Crystal Structures Of Kinesin Mutants Reveal A Sign | 8e-35 | ||
| 1f9w_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-34 | ||
| 1f9u_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 4e-34 | ||
| 1f9v_A | 347 | Crystal Structures Of Mutants Reveal A Signalling P | 5e-34 | ||
| 2heh_A | 387 | Crystal Structure Of The Kif2c Motor Domain (Casp T | 5e-34 | ||
| 1v8j_A | 410 | The Crystal Structure Of The Minimal Functional Dom | 1e-33 | ||
| 3edl_D | 331 | Kinesin13-Microtubule Ring Complex Length = 331 | 1e-32 | ||
| 1ry6_A | 360 | Crystal Structure Of Internal Kinesin Motor Domain | 8e-32 | ||
| 2rep_A | 376 | Crystal Structure Of The Motor Domain Of Human Kine | 8e-32 | ||
| 2kin_A | 238 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 6e-29 | ||
| 3pxn_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 8e-24 | ||
| 3dc4_A | 344 | Crystal Structure Of The Drosophila Kinesin Family | 1e-23 | ||
| 3kin_B | 117 | Kinesin (Dimeric) From Rattus Norvegicus Length = 1 | 3e-15 | ||
| 2kin_B | 100 | Kinesin (Monomeric) From Rattus Norvegicus Length = | 3e-14 |
| >pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 | Back alignment and structure |
|
| >pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 | Back alignment and structure |
| >pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 | Back alignment and structure |
| >pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 | Back alignment and structure |
| >pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 | Back alignment and structure |
| >pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 | Back alignment and structure |
| >pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 | Back alignment and structure |
| >pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 | Back alignment and structure |
| >pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 | Back alignment and structure |
| >pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 | Back alignment and structure |
| >pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 | Back alignment and structure |
| >pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 | Back alignment and structure |
| >pdb|4A1Z|A Chain A, Eg5-1 Length = 368 | Back alignment and structure |
| >pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 | Back alignment and structure |
| >pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 | Back alignment and structure |
| >pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 | Back alignment and structure |
| >pdb|4A28|A Chain A, Eg5-2 Length = 368 | Back alignment and structure |
| >pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 | Back alignment and structure |
| >pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 | Back alignment and structure |
| >pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 | Back alignment and structure |
| >pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 | Back alignment and structure |
| >pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 | Back alignment and structure |
| >pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 | Back alignment and structure |
| >pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 | Back alignment and structure |
| >pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 | Back alignment and structure |
| >pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 | Back alignment and structure |
| >pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 | Back alignment and structure |
| >pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 | Back alignment and structure |
| >pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 | Back alignment and structure |
| >pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 | Back alignment and structure |
| >pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 | Back alignment and structure |
| >pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 | Back alignment and structure |
| >pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 | Back alignment and structure |
| >pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 | Back alignment and structure |
| >pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 | Back alignment and structure |
| >pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 | Back alignment and structure |
| >pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 | Back alignment and structure |
| >pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 | Back alignment and structure |
| >pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 | Back alignment and structure |
| >pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 | Back alignment and structure |
| >pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 | Back alignment and structure |
| >pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 | Back alignment and structure |
| >pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 | Back alignment and structure |
| >pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 | Back alignment and structure |
| >pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 | Back alignment and structure |
| >pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 | Back alignment and structure |
| >pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 | Back alignment and structure |
| >pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 | Back alignment and structure |
| >pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 | Back alignment and structure |
| >pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 | Back alignment and structure |
| >pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 | Back alignment and structure |
| >pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 | Back alignment and structure |
| >pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 | Back alignment and structure |
| >pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 | Back alignment and structure |
| >pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 | Back alignment and structure |
|---|
Score = 472 bits (1216), Expect = e-159
Identities = 150/355 (42%), Positives = 210/355 (59%), Gaps = 20/355 (5%)
Query: 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD 79
+ V VR+RPLN +E + + + D+ +IY+ + S+ FDRVF +
Sbjct: 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDG--------SKSFNFDRVFHGN 55
Query: 80 CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTMIGITEY------TMSDIYDY 133
TT+ VYEE A + + + G N ++FAYGQT+SGKTYTM+G ++ + DI+
Sbjct: 56 ETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQK 115
Query: 134 IEKHKEREFVLKFSAMEIYNESVRDLLSADTS--PLRLLDDPERGTIVEKLTEETLKDWN 191
I+K +REF+L+ S MEIYNE++ DLL PL + +D R V LTEE +
Sbjct: 116 IKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSE 175
Query: 192 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSL-TATVNFVDL 250
+ ++ E R GET +N+ SSRSH I R+ +ES N S+ + +N VDL
Sbjct: 176 MALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDL 235
Query: 251 AGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG-HVPFRDSKLTRILQSSL 309
AGSERA+Q +AG RLKEGC+INRSL LG VI+KLS G+ G + +RDSKLTRILQ+SL
Sbjct: 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSL 295
Query: 310 GGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQ 364
GGNA+T IICT++P +++ L FAS AK + VN V +D+ H
Sbjct: 296 GGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHH 348
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 | Back alignment and structure |
|---|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 | Back alignment and structure |
|---|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 | Back alignment and structure |
|---|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 | Back alignment and structure |
|---|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 | Back alignment and structure |
|---|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 | Back alignment and structure |
|---|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 | Back alignment and structure |
|---|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 | Back alignment and structure |
|---|
| >1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 | Back alignment and structure |
|---|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 | Back alignment and structure |
|---|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 | Back alignment and structure |
|---|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 | Back alignment and structure |
|---|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 | Back alignment and structure |
|---|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 | Back alignment and structure |
|---|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 | Back alignment and structure |
|---|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 | Back alignment and structure |
|---|
| >2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 | Back alignment and structure |
|---|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 | Back alignment and structure |
|---|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 | Back alignment and structure |
|---|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 | Back alignment and structure |
|---|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 | Back alignment and structure |
|---|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 | Back alignment and structure |
|---|
| >2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 | Back alignment and structure |
|---|
| >3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 | Back alignment and structure |
|---|
| >2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1027 | ||||
| d1goja_ | 354 | c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 | 7e-74 | |
| d1bg2a_ | 323 | c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId | 2e-70 | |
| d2zfia1 | 349 | c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), | 5e-69 | |
| d1x88a1 | 345 | c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), | 2e-67 | |
| d1ry6a_ | 330 | c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu | 4e-66 | |
| d1v8ka_ | 362 | c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c | 1e-65 | |
| d1sdma_ | 364 | c.37.1.9 (A:) Kinesin heavy chain-like protein {Po | 6e-65 | |
| d1f9va_ | 342 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 3e-63 | |
| d2ncda_ | 368 | c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun | 2e-58 |
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Score = 246 bits (627), Expect = 7e-74
Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 26/365 (7%)
Query: 20 ERIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCD 79
I V R RP N EI T + + S+TFDRVF
Sbjct: 5 NSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEA-------QGSFTFDRVFDMS 57
Query: 80 CTTRKVYEEGAKEVALAVVSGINSSVFAYGQTSSGKTYTM----------IGITEYTMSD 129
C +++ K +++G N +VFAYGQT +GK+YTM G+ +
Sbjct: 58 CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQ 117
Query: 130 IYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLK 188
I+ I E+ ++ S MEIY E +RDLL+ L + ++ RG V+ L E +
Sbjct: 118 IFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVS 177
Query: 189 DWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFV 248
+ E++ R + T++N+ SSRSH I +T+ E S+ + + V
Sbjct: 178 SVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE----TGSAKSGQLFLV 233
Query: 249 DLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS 308
DLAGSE+ + ++G L+E IN+SL LG VI L+ G++ HVP+RDSKLTRILQ S
Sbjct: 234 DLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQES 293
Query: 309 LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELS 368
LGGN+RT +I SP+ + ++ +TL F AK + A+VN +S L++ L+
Sbjct: 294 LGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAE----LKQMLA 349
Query: 369 RLENE 373
+ + +
Sbjct: 350 KAKTQ 354
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 | Back information, alignment and structure |
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| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 | Back information, alignment and structure |
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| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 | Back information, alignment and structure |
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| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 | Back information, alignment and structure |
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| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1027 | |||
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 100.0 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 100.0 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 100.0 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 100.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 100.0 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ry6a_ | 330 | Kinesin {Malaria parasite (Plasmodium falciparum) | 100.0 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 100.0 | |
| d1f9va_ | 342 | Kinesin motor Ncd (non-claret disjunctional) {Bake | 100.0 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.25 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.99 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.56 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 87.17 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 84.77 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.24 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.16 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 82.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 81.33 |
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=0 Score=625.05 Aligned_cols=341 Identities=35% Similarity=0.533 Sum_probs=310.0
Q ss_pred CEEEEEEECCCCHHHHHCCCCCCEEEECCCEEEECCCCCCCCCCCCCCEEECCEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 74999980899935541199765495189789962885433477688134436243999872467775399999998549
Q 001693 21 RIFVSVRLRPLNEKEIARNDVSDWECINDSTIIYRNNLSVAERSMYPTSYTFDRVFSCDCTTRKVYEEGAKEVALAVVSG 100 (1027)
Q Consensus 21 ~IkV~VRIRPl~~~E~~~~~~~~~~~~~~~tii~~~~~~~~~rs~~~~~F~FD~VF~~~~sQeeVY~~~v~plV~~vL~G 100 (1027)
||+|+|||||+++.|...+....+.+.++.++...... ..++.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 rIkV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~------~~~~~f~FD~vf~~~~~q~~vy~~v-~~lv~~~l~G 73 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD------DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDG 73 (364)
T ss_dssp CCEEEEEECCCCHHHHHTTCCBCEEECSTTEEEEECSS------SSEEEEECSEEECTTCCHHHHHHTT-THHHHHHHTT
T ss_pred CEEEEEECCCCCHHHCCCCCCCEEEECCCCEEEECCCC------CCCEEEECCEECCCCCCHHHHHHHH-HHHHHHHHCC
T ss_conf 96999992789936622589875996799758735789------9854777885649999989999989-9999999669
Q ss_pred CCEEEEEECCCCCCCCCCCC------CCHHHHHHHHHHHHHHCC-CCCEEEEEEEEEEECCCCCCCCCCCCC---CCEEE
Q ss_conf 97369974235999964336------980568999999999411-234167542567534421123589999---95211
Q 001693 101 INSSVFAYGQTSSGKTYTMI------GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTS---PLRLL 170 (1027)
Q Consensus 101 ~N~tIfAYGQTGSGKTyTM~------GIi~rai~dLF~~Ie~~~-e~~f~V~vS~lEIYnE~V~DLL~~~~~---~L~I~ 170 (1027)
||+||||||||||||||||+ |++|+++.+||..+.... ...|.|++||+|||||+++|||.+... .+.++
T Consensus 74 ~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~ 153 (364)
T d1sdma_ 74 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 153 (364)
T ss_dssp CEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEE
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 85035522347877620165676655136789999886553103465536999988872363223357654555443313
Q ss_pred CCCCCCEEECCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCEEEEEEEEEC
Q ss_conf 18999758527736884597789999988663100144567776788626999999842021248999601356799746
Q 001693 171 DDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDL 250 (1027)
Q Consensus 171 ed~~~g~~V~gLte~~V~s~eel~~lL~~g~~~R~~~sT~lN~~SSRSH~IftI~Ie~~~~e~~~~~~s~~~SkL~lVDL 250 (1027)
+++..+++|.|++++.|.++++++.++..|.++|.+++|.+|..|||||+||+|++++... .......++|+||||
T Consensus 154 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~----~~~~~~~~kl~~vDL 229 (364)
T d1sdma_ 154 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL----QTQAIARGKLSFVDL 229 (364)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEET----TTCCEEEEEEEEEEC
T ss_pred ECCCCCCCCCCCEEEEECCHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEEEECC----CCCEEEEEEEEEECH
T ss_conf 3146760203530001177889789864066000445343541033363599999997036----765035679984041
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 89742122344012566532111218999999999528999854568863456643216998410045405998742598
Q 001693 251 AGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 330 (1027)
Q Consensus 251 AGSEr~skt~s~G~rlkEg~~INkSLlaLg~VI~aLs~~k~~hIPYRdSKLTrLLqdSLGGNskT~lIatISPs~~~~eE 330 (1027)
|||||..++++.|.+++|+.+||+||++|++||.+|+++. .|||||+||||+||+|+|||||+|+|||||||+..+++|
T Consensus 230 AGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~-~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~e 308 (364)
T d1sdma_ 230 AGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDE 308 (364)
T ss_dssp CCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHH
T ss_pred HHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHH
T ss_conf 0035200146667502332335643206899999997499-757730112138878634999509999996987001899
Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7999999999621224301122269799999999999999999813
Q 001693 331 SRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRG 376 (1027)
Q Consensus 331 TLsTLrFAsRAK~Ikn~~~vN~v~s~~alik~Lq~Ei~~Lk~eL~~ 376 (1027)
|++||+||++||+|+|+|.+|+... .+.+|+++++.|+.++..
T Consensus 309 Tl~TL~fa~~ak~i~n~p~~n~~~~---~~~~l~~~i~~l~~~~~~ 351 (364)
T d1sdma_ 309 THNSLTYASRVRSIVNDPSKNVSSK---EVARLKKLVSYWKEQAGR 351 (364)
T ss_dssp HHHHHHHHHHHTTCCCCCCCCEECH---HHHHHHTTTTCC------
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999842066783557989---999999999999999874
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|