Citrus Sinensis ID: 001704

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020----

MKIWCCLCFTDDDEEEEQRPENSNSNKMKEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSGENTNDDASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSASTGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS

ccEEEEEEEccHHHHHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccEEccccccccHHHHHHHHHccccEEEEEEcccccccHHHHHHHHccccccEEEcccccccHHHHHHHcccccccEEEEccccccHHHHHHccccccccEEEEcccccHHHccccccccEEEcccccHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccccccccccccEEEcccccccccHHHHHHcccccccEEEcccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHccccccccccccccHHHHHHHHccccccEEcccccccccHHHHHHHHcccccccccEEEEEccccccccccccccccEEcccccccHHHHHHccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccEEEccccccccHHHHHHHHcccccccEEEEcccccccHHHHHHccccccccEEEccccccccHHHHHHccccccEEEEcccccccHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHccccccEEEEccccccccHHHHccccccccccccccccccccccHHHHHHHcccccccEEEccccccccccccccccccccccEEcccccccccccccccccccEEEccccccHHHHHcccccccEEEEccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEccccc

ccEEEEEEccccHccccccccccHHcccccccHHcccccccccccccccHHHHHccccccccccEEEEEEEEccHHHEcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHcccccHEEEcccccEEEEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHcccccEEEcccccccHHHHHHHHccccccEEEcccccccccHHHHHHHcccccEEccccccHHHHHcccccccEcccccccHHHHHcccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHcccccccEEEccccccccHHHHHHHHHcccccEEEcccccccccHHcccccccEEEccccccccHHHHHHHHHccccccccccccccccEEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccccEEEcccccccccHHHHHccccEEEccccccHHHHHHHcccccEEEccccccccHHHHHHHcccEEccccccccccHHcccccccEEEcccccccccHccccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHcccccHccHcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccHcccHHHHHHHcccccccEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEEcccc

mkiwcclcftdddeeeeqrpensnsnkmKEGISAIEhesegnignvsGDVAMQLgrrnastsnntgilpfeimpqailddvystmsgentnddasvpsarrhasrrgpvirgtrrfdgessggscsagskalavedsqhkrakvysastghyvttgssdagassslaggdynvsqgssvpgtgeifcnyftwnsggdgnpfdasggndggddngtpktedLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCqrypnatevniygaPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSmlkslnvndatlgngvqeipinhdQLRRLEITKCRVMrvsircpqlehlsLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAAtscpqlesldmsncscvsdESLREIALSCANLrilnssycpnislesvrlpmlTVLQLHscegitsaSMAAISHSYMLEVLEldncnlltsvslelprlqnirlvHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQclqevdltdcesltnsvcevfsdgggcpmlkslvldncegltVVRFCSTSLVSLSLVGCRAITALElkcpilekvcldgcdhiesasfVPVALQslnlgicpklstLGIEALHMVVLELKgcgvlsdayincplltsldasfcsqlkddclsatttscpLIESLILMscqsigpdglysLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLtntsleslykkgslpalqeLDLSYGTLCQSAIEELLAYCTHLthvslngcgnmhdlnwgasgcqpfespsvynscgifphenihesidqpnrllqnlncvgcpnirkvfippqarcfhLSSLNLSLSANLKEVDVACFNLCFlnlsnccsletlkldcpkltslFLQSCNIDEEGVESAITqcgmletldvrfcpkicstsmgrlraaCPSLKRIFSSLTTS

mkiwcclcftdddeeeeqrpensnsnkmKEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSGENtnddasvpsarrhasrrgpvirgtrrfdgessggscSAGSKALAVEDSQHKRAKVYSASTGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNgvqeipinhdqlrRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICStsmgrlraacpslkrifssltts

MKIWCCLCFTDDDEEEEQRPENSNSNKMKEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSGENTNDDASVPSARRHASRRGPVIRGTRRFDgessggscsagsKALAVEDSQHKRAKVYSASTGHYVTTgssdagassslaggdYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASggndggddngTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHlsslnlslsanlKEVDVAcfnlcflnlsnccslETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS

**IWCCLCFT*******************************************************GILPFEIMPQAILDDVY**************************************************************************************************GTGEIFCNYFTWNS****************************IRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIF******

MKIWCCLCF**********************************************************************************************************************************************************************************************************************RMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLT**

MKIWCCLCFTDD****************KEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG*******************GPVIRGTRR******************************SASTGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS

MKIWCCLCFTDD***EEQRPENSNSNKMKEGI**I***SEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSGENTNDDAS***************************************EDSQHKRAKVYSASTGHYVTTGSSDAG****LAGGDYNVSQGSSVPGTGEIFCNYFTWNS*********************PKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTT*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1024	2.2.26 [Sep-21-2011]
Q9SMY8		990	F-box/LRR-repeat protein	yes	no	0.856	0.885	0.709	0.0
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.344	0.809	0.255	2e-19
Q96IG2		436	F-box/LRR-repeat protein	no	no	0.344	0.809	0.255	3e-19
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.344	0.809	0.255	3e-19
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.374	0.627	0.25	6e-19
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.337	0.817	0.259	2e-17
Q9UKC9		423	F-box/LRR-repeat protein	no	no	0.336	0.815	0.260	2e-17
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.342	0.829	0.257	1e-16
A6H779		423	F-box/LRR-repeat protein	no	no	0.299	0.725	0.272	2e-16
Q9UJT9		491	F-box/LRR-repeat protein	no	no	0.311	0.649	0.251	8e-16

>sp\|Q9SMY8\|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2	Back alignment and function desciption

 Score = 1243 bits (3216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/889 (70%), Positives = 733/889 (82%), Gaps = 12/889 (1%)

Query: 133  AVEDSQHKRAKVYSA-STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFT 191
            A  DS HKRAKVYS  +    V+  SSDAG S S      +    SS     ++FC  F 
Sbjct: 107  ADHDSYHKRAKVYSGLAECRSVSGVSSDAGNSVSSVERTVSFGIASSSRTDTDMFCQNFI 166

Query: 192  WNSGGDGNPFDASGGNDGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVC 251
             N           G  D GDDNG+  TED E+ +DLTDDLLHMVFSFL++VDLCR+A+VC
Sbjct: 167  LNYN------RKDGKKDDGDDNGSSDTEDFEVHIDLTDDLLHMVFSFLNHVDLCRSAMVC 220

Query: 252  RQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLL 311
            RQWR ASAHEDFWR LNFEN +IS+EQFE++C RYPNATEVN+YGAPA++ L MKA + L
Sbjct: 221  RQWRVASAHEDFWRVLNFENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTL 280

Query: 312  RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 371
            RNLE LT+G+G + ++FF AL +C+ML+S+ V+DA LGNG QEI ++HD+LR L+ITKCR
Sbjct: 281  RNLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLRELKITKCR 340

Query: 372  VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESL 431
            VMR+SIRCPQL  LSLKRSNM+QA+LNCPLL LLDIASCHKL DAAIR AA SCPQLESL
Sbjct: 341  VMRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESL 400

Query: 432  DMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASM 491
            D+SNCSCVSDE+LREIA +CANL ILN+SYCPNISLESV LPMLTVL+LHSCEGITSASM
Sbjct: 401  DVSNCSCVSDETLREIAQACANLHILNASYCPNISLESVHLPMLTVLKLHSCEGITSASM 460

Query: 492  AAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 551
              I++S  LEVLELDNCNLLT+VSL L RLQ+I LVHCRKF DLNL+++MLSSI VSNC 
Sbjct: 461  TWIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVHCRKFTDLNLQSIMLSSITVSNCP 520

Query: 552  ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 611
            AL RI ITSN+L++L+LQKQENLT+L LQC  LQEVDL+DCESL+NSVC++FSD GGCPM
Sbjct: 521  ALRRITITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLSNSVCKIFSDDGGCPM 580

Query: 612  LKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFV 671
            LKSL+LDNCE LT VRFC++SL SLSLVGCRA+T+LELKCP +E++CLDGCDH+E+A F 
Sbjct: 581  LKSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDHLETAFFQ 640

Query: 672  PVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDD 731
            PVAL+SLNLGICPKLS L IEA +MV LELKGCGVLS+A I CPLLTSLDASFCSQL+DD
Sbjct: 641  PVALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLSEASIMCPLLTSLDASFCSQLRDD 700

Query: 732  CLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQL 791
            CLSATT SCPLIESL+LMSC SIG DGL SL  L NLT+LDLSYTFL NLEPVF+SC+QL
Sbjct: 701  CLSATTASCPLIESLVLMSCPSIGSDGLSSLNGLPNLTVLDLSYTFLMNLEPVFKSCIQL 760

Query: 792  KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 851
            KVLKLQACKYLT++SLE LYK+G+LPAL+ELDLSYGTLCQ+AI++LLA CTHLTH+SLNG
Sbjct: 761  KVLKLQACKYLTDSSLEPLYKEGALPALEELDLSYGTLCQTAIDDLLACCTHLTHLSLNG 820

Query: 852  CGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVF 911
            C NMHDL+WG++    F+   VY+S      +N  E  +  NRLLQNLNCVGCPNIRKV 
Sbjct: 821  CVNMHDLDWGSTSVHLFDYFGVYSS-----SDNTQEPAETANRLLQNLNCVGCPNIRKVL 875

Query: 912  IPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSC 971
            IPP AR +HLS+LNLSLS NLKEVD+ C NL  LNLSNCCSLE LKL CP+L SLFLQSC
Sbjct: 876  IPPAARFYHLSTLNLSLSVNLKEVDLTCSNLVLLNLSNCCSLEVLKLGCPRLASLFLQSC 935

Query: 972  NIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSS 1020
            N+DE GVE+AI+ C  LETLD+RFCPKI S SM + R  CPSLKR+FSS
Sbjct: 936  NMDEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFRTVCPSLKRVFSS 984

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UJT9\|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1024
343887327		1068	F-box / LRR-repeat protein [Citrus unshi	0.966	0.926	0.765	0.0
255550167		997	conserved hypothetical protein [Ricinus	0.897	0.921	0.789	0.0
224141687		957	predicted protein [Populus trichocarpa]	0.894	0.957	0.775	0.0
356552386		975	PREDICTED: F-box/LRR-repeat protein 15-l	0.864	0.907	0.750	0.0
296081717		957	unnamed protein product [Vitis vinifera]	0.862	0.922	0.770	0.0
356564031		982	PREDICTED: F-box/LRR-repeat protein 15-l	0.876	0.914	0.725	0.0
356514729		893	PREDICTED: F-box/LRR-repeat protein 15-l	0.862	0.988	0.721	0.0
297798620		990	predicted protein [Arabidopsis lyrata su	0.878	0.909	0.697	0.0
334187119		990	F-box/LRR-repeat protein 15 [Arabidopsis	0.856	0.885	0.709	0.0
357437317		1026	F-box/LRR-repeat protein [Medicago trunc	0.958	0.957	0.624	0.0

>gi\|343887327\|dbj\|BAK61873.1\| F-box / LRR-repeat protein [Citrus unshiu]	Back alignment and taxonomy information

 Score = 1456 bits (3770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1075 (76%), Positives = 865/1075 (80%), Gaps = 85/1075 (7%)

Query: 28   MKEGISAIEHESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG 87
            MKEGISAIE ESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG
Sbjct: 1    MKEGISAIEDESEGNIGNVSGDVAMQLGRRNASTSNNTGILPFEIMPQAILDDVYSTMSG 60

Query: 88   ENTNDDASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA 147
            ENTN DASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA
Sbjct: 61   ENTNVDASVPSARRHASRRGPVIRGTRRFDGESSGGSCSAGSKALAVEDSQHKRAKVYSA 120

Query: 148  STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN 207
            STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN
Sbjct: 121  STGHYVTTGSSDAGASSSLAGGDYNVSQGSSVPGTGEIFCNYFTWNSGGDGNPFDASGGN 180

Query: 208  DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 267
            DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL
Sbjct: 181  DGGDDNGTPKTEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCL 240

Query: 268  NFENRKISVEQ----FEDVCQRYPNATEVNIYGAPAIHL-LVMKAVSLLRNLEALTLGRG 322
            NFENRKISVEQ        C    +           + + ++ +    ++N    +L   
Sbjct: 241  NFENRKISVEQLTMHLAKCCGALLDLVHGGDVVVVDLSIGMIRRHFGFVKNYMWWSLKCS 300

Query: 323  QLGDAFFHA-LADCSMLKSLN------VNDATLGNGVQEIPINHDQLRRLEI-----TKC 370
             L  A F A +    M+ SL            +   V+++   +     + I        
Sbjct: 301  ILELAIFRADMVIACMMGSLESSFDLLYTPKKMKGLVEDVCQRYPNATEVNIYGAPAIHL 360

Query: 371  RVMRVSIRCPQLEHLSLKRSNMAQAVL----NCPLLHLLDIASCH--------------- 411
             VM+       LE L+L R  +  A      +C +L  L++                   
Sbjct: 361  LVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQL 420

Query: 412  ---KLSDAAIRLAATSCPQLES--------------------LDMSNCSCVSDESLREIA 448
               +++   +   +  CPQLE                     LD+++C  +SD ++R  A
Sbjct: 421  RRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA 480

Query: 449  LSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 508
             SC  L  L+ S C  +S ES+R   L+   L     + S+    IS    LEVLELDNC
Sbjct: 481  TSCPQLESLDMSNCSCVSDESLREIALSCANLRI---LNSSYCPNIS----LEVLELDNC 533

Query: 509  NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 568
            NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL
Sbjct: 534  NLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 593

Query: 569  QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE------- 621
            QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE       
Sbjct: 594  QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCECEEPCSY 653

Query: 622  ------------GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS 669
                        GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS
Sbjct: 654  DGKHCYIKNEKGGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS 713

Query: 670  FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 729
            FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK
Sbjct: 714  FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 773

Query: 730  DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCL 789
            DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCL
Sbjct: 774  DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCL 833

Query: 790  QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 849
            QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL
Sbjct: 834  QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 893

Query: 850  NGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRK 909
            NGCGNMHDLNWG+SGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRK
Sbjct: 894  NGCGNMHDLNWGSSGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRK 953

Query: 910  VFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQ 969
            VFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQ
Sbjct: 954  VFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQ 1013

Query: 970  SCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 1024
            SCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS
Sbjct: 1014 SCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 1068

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255550167\|ref\|XP_002516134.1\| conserved hypothetical protein [Ricinus communis] gi\|223544620\|gb\|EEF46136.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|224141687\|ref\|XP_002324196.1\| predicted protein [Populus trichocarpa] gi\|222865630\|gb\|EEF02761.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356552386\|ref\|XP_003544549.1\| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|296081717\|emb\|CBI20722.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356564031\|ref\|XP_003550260.1\| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|356514729\|ref\|XP_003526056.1\| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max]	Back alignment and taxonomy information

>gi\|297798620\|ref\|XP_002867194.1\| predicted protein [Arabidopsis lyrata subsp. lyrata] gi\|297313030\|gb\|EFH43453.1\| predicted protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187119\|ref\|NP_567916.2\| F-box/LRR-repeat protein 15 [Arabidopsis thaliana] gi\|124007179\|sp\|Q9SMY8.2\|FBL15_ARATH RecName: Full=F-box/LRR-repeat protein 15 gi\|332660791\|gb\|AEE86191.1\| F-box/LRR-repeat protein 15 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357437317\|ref\|XP_003588934.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355477982\|gb\|AES59185.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1024
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.349	0.846	0.26	2.3e-24
RGD\|1562243		422	Fbxl2 "F-box and leucine-rich	0.348	0.845	0.260	4.3e-24
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.345	0.811	0.257	4.3e-24
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.345	0.811	0.257	5.7e-24
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.345	0.811	0.257	5.7e-24
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.340	0.827	0.265	1.4e-23
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.337	0.817	0.271	1.5e-23
UNIPROTKB\|Q9UKC9		423	FBXL2 "F-box/LRR-repeat protei	0.340	0.825	0.263	2.1e-23
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.340	0.825	0.263	2.1e-23
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.340	0.825	0.260	4.6e-22

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 287 (106.1 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
 Identities = 104/400 (26%), Positives = 189/400 (47%)

Query:   218 TEDLEIRMDLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVE 277
             ++D  I   L  +LL  +FSFLD V LCR A + + W   +     W+ ++  N +  VE
Sbjct:     6 SDDGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWNILALDGSNWQRVDLFNFQTDVE 65

Query:   278 Q--FEDVCQRYPN-ATEVNIYGAPAIHLLVMKAVSL-LRNLEALTL-GRGQLGDAFFHAL 332
                 E++ +R      ++++ G   +    +K  +   RN+E L L G  ++ D+  ++L
Sbjct:    66 GRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSL 125

Query:   333 AD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VSIR-CPQLEHLSLKR 389
             +  CS LK L++           + + +  L+ +    CR +  +++  C Q+      +
Sbjct:   126 SRFCSKLKHLDLTSC--------VSVTNSSLKGIS-EGCRNLEYLNLSWCDQIT-----K 171

Query:   390 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL 449
               +   V  C  L  L +  C +L D A++     C +L SL++ +CS ++D+ + +I  
Sbjct:   172 EGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICR 231

Query:   450 SCANLRILNSSYCPNI---SLESVRL--PMLTVLQLHSCEGITSASMAAISHS-YMLEVL 503
              C  L+ L  S C N+   SL ++ L  P L VL+   C  +T A    ++ + + LE +
Sbjct:   232 GCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKM 291

Query:   504 ELDNCNLLTS-----VSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 558
             +L+ C L+T      +S+  P+LQ + L HC    D  +  + LSS   S C    R+ +
Sbjct:   292 DLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGI--LHLSS---STCGH-ERLRV 345

Query:   559 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 598
                 L    L    +L  L   C+ L+ ++L DC+ +T +
Sbjct:   346 LE--LDNCLLVTDASLEHLE-NCRGLERLELYDCQQVTRA 382

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

RGD\|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SMY8	FBL15_ARATH	No assigned EC number	0.7097	0.8564	0.8858	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_VI001491	f-box family protein (975 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1024
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-16
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-09
pfam12937		47	pfam12937, F-box-like, F-box-like	3e-09
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-07
smart00256		41	smart00256, FBOX, A Receptor for Ubiquitination Ta	7e-07
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-06
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-06
pfam00646		48	pfam00646, F-box, F-box domain	2e-06
smart00367		26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	0.001
pfam13855		60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 21/184 (11%)

Query: 353 QEIPINHDQLRRLEITKCRV----MRVSIRCPQLEHLSLKRSN------MAQAVLNCPLL 402
           Q + I H  L  LE+  C +    +     C +L+ L L  S       +     +CP L
Sbjct: 21  QLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80

Query: 403 HLLDIASCHKLSDAAIRLAATSCPQLESLDMS---NCSCVSDESLREIALSCANLRILNS 459
            +LD+ +C  ++D+ I   AT+CP+L+++++    N   ++D SL  +  +C  L+ +  
Sbjct: 81  QVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140

Query: 460 SYCP-----NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYM---LEVLELDNCNLL 511
           + C         L S     L  L L++C  +T  S+ AI  S     L VLE   C L+
Sbjct: 141 AGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200

Query: 512 TSVS 515
           T  S
Sbjct: 201 TDFS 204

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|221867 pfam12937, F-box-like, F-box-like	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|201368 pfam00646, F-box, F-box domain	Back alignment and domain information

>gnl\|CDD\|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>gnl\|CDD\|206026 pfam13855, LRR_8, Leucine rich repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1024
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	99.94
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.83
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.82
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.79
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.77
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.74
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.71
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.7
KOG4341		483	consensus F-box protein containing LRR [General fu	99.69
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.47
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.34
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.34
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.29
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.2
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.06
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.06
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.05
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.01
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.93
KOG1947		482	consensus Leucine rich repeat proteins, some prote	98.9
KOG0617		264	consensus Ras suppressor protein (contains leucine	98.88
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.83
KOG0617		264	consensus Ras suppressor protein (contains leucine	98.82
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
KOG1947		482	consensus Leucine rich repeat proteins, some prote	98.74
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.71
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.55
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.45
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.27
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.23
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.2
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.11
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	98.1
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.07
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.04
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.0
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.0
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.94
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.89
PLN03150		623	hypothetical protein; Provisional	97.87
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.8
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.75
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	97.66
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	97.64
PLN03150		623	hypothetical protein; Provisional	97.56
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	97.48
PRK15386		426	type III secretion protein GogB; Provisional	97.41
PRK15386		426	type III secretion protein GogB; Provisional	97.38
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.35
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	97.13
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.09
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	97.01
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	96.72
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	96.7
KOG3864		221	consensus Uncharacterized conserved protein [Funct	96.6
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.53
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.5
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.33
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	96.26
KOG3864		221	consensus Uncharacterized conserved protein [Funct	96.24
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.13
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	96.08
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.85
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	95.85
KOG2123		388	consensus Uncharacterized conserved protein [Funct	95.33
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.39
KOG4308		478	consensus LRR-containing protein [Function unknown	93.82
KOG4308		478	consensus LRR-containing protein [Function unknown	93.73
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.02
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	92.51
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.64
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	91.11
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	90.67
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.02
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.49
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.9

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.9e-35  Score=376.96  Aligned_cols=507  Identities=20%  Similarity=0.184  Sum_probs=376.1

Q ss_pred             CCCceEEEEcCCCchhHHHHHHHhcCCCCCEEEccCcccchHHHHhhc-CCCCCCEEEecCCCCCCCcccccccCCcccE
Q 001704          286 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRR  364 (1024)
Q Consensus       286 ~~~l~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~~~i~~~~~~~l~-~~~~L~~L~L~~~~l~~~l~~~~~~~~~L~~  364 (1024)
                      ..+|+.|++++ +.+....+.++..+++|+.|+|++|.+.+.++..+. .+++|++|++++|.+.+.+|.  ..+++|++
T Consensus        68 ~~~v~~L~L~~-~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~  144 (968)
T PLN00113         68 SSRVVSIDLSG-KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET  144 (968)
T ss_pred             CCcEEEEEecC-CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence            35799999998 566777788899999999999999999877776655 899999999999999887764  45789999


Q ss_pred             EEecccccchh-c---ccCCCCceecccCccHH----HHHhcCCCccEEEEeCCCCCChHHHHHHHhcCCCCCEEEecCC
Q 001704          365 LEITKCRVMRV-S---IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC  436 (1024)
Q Consensus       365 L~L~~~~~~~~-~---~~~~~L~~L~L~~~~l~----~~~~~~~~L~~L~L~~~~~i~~~~l~~~~~~~~~L~~L~L~~~  436 (1024)
                      |+|++|.+... +   ..+++|++|++++|.+.    ..+.++++|++|++++|. ++ ..++..+..+++|++|++++|
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-LV-GQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-Cc-CcCChHHcCcCCccEEECcCC
Confidence            99999987632 2   36889999999988764    557788999999998884 43 234566778899999999988


Q ss_pred             CcCChHHHHHHHHhCCcccEEeccCCC---CCCccccCCCCccEEEecCCCCCChhHHHhhhcCCCccEEEecCCCCCcc
Q 001704          437 SCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS  513 (1024)
Q Consensus       437 ~~l~~~~l~~l~~~~~~L~~L~L~~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~  513 (1024)
                      . +++..+..+. ++++|++|++++|.   .++..+..+++|++|++++| .+....+..+..+++|+.|++++|...+.
T Consensus       223 ~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  299 (968)
T PLN00113        223 N-LSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGE  299 (968)
T ss_pred             c-cCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEECcCCeeccC
Confidence            7 6555555554 78899999998886   45667778889999999886 55555666777888899999988877666


Q ss_pred             ccccCCcCceEeeccccccccccccccccccc---ccccccccceecccccccccccccchhhHHHHHHhcCcccEEecc
Q 001704          514 VSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLT  590 (1024)
Q Consensus       514 ~~~~~~~L~~L~l~~c~~L~~l~l~~~~l~~l---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~Ls  590 (1024)
                      +|..+.        .+++|+.+++.+|.+...   .+..+++|+.|++++|.+.+..+...       ..+++|+.|+++
T Consensus       300 ~p~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-------~~~~~L~~L~Ls  364 (968)
T PLN00113        300 IPELVI--------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL-------GKHNNLTVLDLS  364 (968)
T ss_pred             CChhHc--------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH-------hCCCCCcEEECC
Confidence            554322        122233333334433322   35667777777777777765432211       145677778877


Q ss_pred             CCcCchhhhhhhhcCCCCCCCccEEeccCCCCCceeccccCccceeecccCcccccccccCCCccEEEcCCCCCcccccc
Q 001704          591 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF  670 (1024)
Q Consensus       591 ~c~~l~~~~~~~l~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~  670 (1024)
                      +| .+++..+..+   ..+++|+.|++.+|. ++..                 +......+++|+.|++++|....   .
T Consensus       365 ~n-~l~~~~p~~~---~~~~~L~~L~l~~n~-l~~~-----------------~p~~~~~~~~L~~L~L~~n~l~~---~  419 (968)
T PLN00113        365 TN-NLTGEIPEGL---CSSGNLFKLILFSNS-LEGE-----------------IPKSLGACRSLRRVRLQDNSFSG---E  419 (968)
T ss_pred             CC-eeEeeCChhH---hCcCCCCEEECcCCE-eccc-----------------CCHHHhCCCCCCEEECcCCEeee---E
Confidence            73 6666555555   456677777777765 2211                 11112246788888888875432   3


Q ss_pred             cccccceeeccCCCCccccccccccceEEeeecccccCccccCCCcccEEecccCCCCchhhHhhhhhcCCCccEEEecc
Q 001704          671 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS  750 (1024)
Q Consensus       671 ~p~~L~~L~l~~~~~L~~L~l~~n~l~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~~l~d~~l~~~~~~~~~L~~L~L~~  750 (1024)
                      .|..     +..++.|+.+++++|.+.       +.++..+..+++|+.|++++|. +. ..++..+ ..++|+.|++++
T Consensus       420 ~p~~-----~~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~n~-~~-~~~p~~~-~~~~L~~L~ls~  484 (968)
T PLN00113        420 LPSE-----FTKLPLVYFLDISNNNLQ-------GRINSRKWDMPSLQMLSLARNK-FF-GGLPDSF-GSKRLENLDLSR  484 (968)
T ss_pred             CChh-----HhcCCCCCEEECcCCccc-------CccChhhccCCCCcEEECcCce-ee-eecCccc-ccccceEEECcC
Confidence            4443     678889999999999886       6677777789999999999984 44 2334333 457899999999


Q ss_pred             CCCCCchhhhhhccCCCCCEEecCCCccCC-chhhhhcCCCCcEEEecCCCCcchhhhHhhhhcCCCCCCcEEeCCCCcc
Q 001704          751 CQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL  829 (1024)
Q Consensus       751 ~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~L~~L~l~~n~l  829 (1024)
                      |... ...+..+..+++|+.|+|++|.+.+ +|..+..+++|++|++++|. +++..+..+   ..+++|+.|++++|.+
T Consensus       485 n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~---~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        485 NQFS-GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ-LSGQIPASF---SEMPVLSQLDLSQNQL  559 (968)
T ss_pred             CccC-CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc-ccccCChhH---hCcccCCEEECCCCcc
Confidence            9854 3445678889999999999999986 67788999999999999988 888777776   7889999999999999


Q ss_pred             chHHHHHHHhhCCcccEEEecCCCCccccccc
Q 001704          830 CQSAIEELLAYCTHLTHVSLNGCGNMHDLNWG  861 (1024)
Q Consensus       830 ~~~~~~~~l~~~~~L~~L~l~~c~~l~~~~~~  861 (1024)
                      ++ .+|..+..+++|+.|++++|+....+|..
T Consensus       560 ~~-~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        560 SG-EIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             cc-cCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            76 57778888999999999999877666543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1024
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-50
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	7e-34
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-24
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	4e-08
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-46
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-21
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-15
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-13
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-45
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-34
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-25
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	7e-22
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-21
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-10
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	2e-11
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-16
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-15
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-09
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-16
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-15
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-15
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-09
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-15
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-15
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-10
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	6e-07
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-13
1o6v_A		466	Internalin A; bacterial infection, extracellular r	4e-10
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A		466	Internalin A; bacterial infection, extracellular r	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1fs1_A		53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-09
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-08
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-06
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	6e-08
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	8e-08
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	9e-08
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	9e-08
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	3e-04
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	6e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-08
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	2e-08
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A		567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3l2o_B		312	F-box only protein 4; small G protein fold, UBL co	8e-08
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-07
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-06
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	8e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	3e-07
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	7e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-07
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	4e-06
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	5e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-06
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-04
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	8e-06
3v47_A		455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
2e31_A		297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	9e-06
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
1ds9_A		198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A		149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-04
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
1a9n_A		176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2ell_A		168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1wwl_A		312	Monocyte differentiation antigen CD14; LPS, immune	7e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	6e-04
1p22_A		435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	7e-04
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	9e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  187 bits (475), Expect = 3e-50
 Identities = 94/617 (15%), Positives = 183/617 (29%), Gaps = 126/617 (20%)

Query: 223 IRMDLTDDLLHMVFSFLD-YVDLCRAAIVCRQWRAASAHEDFWRCLNFENRKISVEQFED 281
           I +   +++L  VFSF+    D    ++VC+ W         W                 
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIER----WCRRKVFIGNCYAVSPAT 60

Query: 282 VCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD-CSMLKS 340
           V +R+P    V + G P              +   +  G G     +  A++   + L+ 
Sbjct: 61  VIRRFPKVRSVELKGKPHF-----------ADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109

Query: 341 LNVNDATLGN-GVQEIPINHDQLRRLEITKCR------VMRVSIRCPQLEHLSLKRSN-- 391
           + +    + +  ++ I  +    + L ++ C       +  ++  C  L+ L L+ S+  
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169

Query: 392 ------MAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 444
                 ++        L  L+I+    ++S +A+    T CP L+SL ++    V  E L
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKL 227

Query: 445 REIALSCANLRILNSSYCPNISLESVRLPMLTVLQ-------LHSCEGITSASMAAI-SH 496
             +      L  L +          V   +   L        L        A + A+ S 
Sbjct: 228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287

Query: 497 SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRI 556
              L  L L    + +   ++L       L  C K   L +                   
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKL-------LCQCPKLQRLWVLD----------------- 323

Query: 557 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG------GCP 610
            I    L+            LA  C+ L+E+ +   E          ++ G      GCP
Sbjct: 324 YIEDAGLE-----------VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 611 MLKSLVLDNC----EGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIE 666
            L+S++          L  +     ++    L                            
Sbjct: 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA------------PDYLTLEPL 420

Query: 667 SASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI-----NCPLLTSLD 721
              F  +         C  L  L +             G+L+D            +  L 
Sbjct: 421 DIGFGAIVEH------CKDLRRLSL------------SGLLTDKVFEYIGTYAKKMEMLS 462

Query: 722 ASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 780
            +F     D  +    + C  +  L +  C       L +   L+ +  L +S   ++  
Sbjct: 463 VAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

Query: 781 -LEPVFESCLQLKVLKL 796
             + + +   +L V  +
Sbjct: 522 ACKLLGQKMPKLNVEVI 538

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455	Back alignment and structure

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149	Back alignment and structure

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176	Back alignment and structure

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1024
d1fs1a1		41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-09
d1p22a1		118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-09
d1nexb1		100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-09
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-06
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-04
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d2ovrb1		102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-08
d1koha1		162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	8e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1h6ua2		227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d2omza2		384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1h6ta2		210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41	Back information, alignment and structure


class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 226 DLTDDLLHMVFSFLDYVDLCRAAIVCRQWRAASAHEDFW 264
            L D+LL  +FS L   +L + + VC++W   ++ E  W
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

PyMOL of d1fs1a1

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1024
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.94
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.94
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.93
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.83
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.77
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.74
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.73
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.72
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.58
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.43
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.42
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.33
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.25
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.22
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.17
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.04
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.94
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.93
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.9
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.85
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.83
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.73
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.0

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.7e-25  Score=149.11  Aligned_cols=100  Identities=25%  Similarity=0.332  Sum_probs=39.5

Q ss_pred             CCCCCCEEEECCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             49996699712588879225662004998798953897347923664138987699823787863021475661399999
Q 001704          739 SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA  818 (1024)
Q Consensus       739 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~l~~  818 (1024)
                      .++.++.+.+..+....   +..+..+++++.|++++|.+.++++ +..+++|++|++++|. +++..  .+   ..+++
T Consensus       283 ~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~-l~~l~--~l---~~l~~  352 (384)
T d2omza2         283 GLTALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK-VSDVS--SL---ANLTN  352 (384)
T ss_dssp             TCTTCSEEECCSSCCSC---CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG--GG---GGCTT
T ss_pred             CCCCCCCCCCCCCCCCC---CCCCCHHCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCC-CCCCH--HH---CCCCC
T ss_conf             56522223323233333---2210000246767777887789845-3668988989898998-99974--67---08999


Q ss_pred             CCEEECCCCCCCHHHHHHHHHHCCCCCEEEECC
Q ss_conf             729848998554579999995199612998069
Q 001704          819 LQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG  851 (1024)
Q Consensus       819 L~~L~ls~n~l~~~~~~~~l~~~~~L~~L~l~~  851 (1024)
                      |+.|++++|.+++. ++  +..+++|+.|++++
T Consensus       353 L~~L~l~~N~l~~l-~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         353 INWLSAGHNQISDL-TP--LANLTRITQLGLND  382 (384)
T ss_dssp             CCEEECCSSCCCBC-GG--GTTCTTCSEEECCC
T ss_pred             CCEEECCCCCCCCC-HH--HCCCCCCCEEECCC
T ss_conf             99898979958998-00--00399999963978

PyMOL of d2omza2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure