Citrus Sinensis ID: 001749

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAPKS
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc
cHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccEEEccccHHHHHccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHccHHHHHHHHHHHHHHHHHHHHHHccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHccc
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITghwaklspQLKQLVKQSLIESitlehsapvrraSANVVSIIAKYavpagewpdllpflFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFleftndgaevvkfreFIPSILNVSRQCLASGEEDVAVIAFEIFDEliespapllgdsVKSIVHFSLEvssshnlepntrHQAIQIISWLAKYKYnslkkhklvIPILQVMCpllaesneagedddlapdRAAAEVIDTMALNLakhvfppvfefasvscqnaspKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGalrdpeqfVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEdesdevkeKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESvgrarmepilppfVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPlafsscnlddgsavdidgsddeningfggvssddeahcersVRNISVRTGVLDEKAAATQALGLFAlhtkssyapfLEESLKILSHNEGPAKAREILDTVMNIFIRTmtedddkdVVAQACTSIVEIIndygymavepyMSRLVDATLLLLREestcqqpdndsdieddddtahDEVIMDAVSDLLPAFaksmgphfapIFAKLFDPLmkfakssrplqdrTMVVATLAEVARDMGSPIAAYVDRVMPLVLKelaspdamnrrnAAFCVGELCKNGGESALKYYGDILrglyplfgdsepddavRDNAAGAVARMIMVnpqsiplnqvLPVLLKvlplkedfeeSMAVYNCISTLvlssnpqilsLVPELVNLFAEVVvspeessevKSQVGMAFSHLISLYGQqmqpllsnlspAHATALAAFAPKS
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHlrtaktpnvRQLAAVLLRKKITGhwaklspqlKQLVKQSLIESitlehsapvrrASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVssshnlepntrHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFggvssddeahcERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTmtedddkdvVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEStcqqpdndsdieddDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAkssrplqdrtMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPqsiplnqvLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAPKS
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPdndsdieddddtahdEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQvlpvllkvlplkEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAevvvspeessevksQVGMAFSHLISLYGQQMQPLLSNLSPahatalaafaPKS
******LLLIQFLM********************QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS***EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS*******NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA****************AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI************************SVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIR***********AQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLR************************VIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS****AVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVS**********VGMAFSHLISLYGQQMQ*********************
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ****EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLA***********LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQ**********DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEE**EV*SQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFA***
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVV**********QVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAPKS
*AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDEN*N****VSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAPK*
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MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAPKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1018 2.2.26 [Sep-21-2011]
O601001067 Probable importin subunit yes no 0.955 0.911 0.268 1e-90
Q8VI751082 Importin-4 OS=Mus musculu yes no 0.928 0.873 0.279 1e-85
Q8TEX91081 Importin-4 OS=Homo sapien yes no 0.921 0.867 0.281 5e-83
P400691113 Importin subunit beta-4 O yes no 0.902 0.825 0.254 7e-74
O004101097 Importin-5 OS=Homo sapien no no 0.924 0.857 0.241 7e-66
Q8BKC51097 Importin-5 OS=Mus musculu no no 0.924 0.857 0.239 2e-65
Q8BIV31105 Ran-binding protein 6 OS= no no 0.933 0.859 0.238 1e-54
O605181105 Ran-binding protein 6 OS= no no 0.923 0.850 0.236 3e-54
O744761095 Importin subunit beta-3 O no no 0.914 0.850 0.228 5e-46
Q54EW31067 Probable importin-5 homol no no 0.600 0.572 0.234 4e-39
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function desciption
 Score =  335 bits (858), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 280/1041 (26%), Positives = 505/1041 (48%), Gaps = 68/1041 (6%)

Query: 4    SLEL--LLIQFLMPDNDARRQAEDQIK-RLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
            +LEL  LL Q + PD     +A   ++ +  K+P  + +L   + T + P VRQLAA+  
Sbjct: 6    TLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFHIMGTCENPQVRQLAAIEA 65

Query: 61   RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
            RK    +W+ +   ++  ++ +L++    E  + VR A   V++ +AK  +P G+W +L 
Sbjct: 66   RKLCHKYWSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRVIAALAKLDLPEGKWNELS 125

Query: 121  PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
             FL Q +  + +  RE+A+ +  S+ ET+    +    D   L  + + D +S  VR+ +
Sbjct: 126  AFLVQATMDQNDSIREMAVYVLYSIAETVDLDNK-LLLDFVNLFSQTITD-SSRTVRVTS 183

Query: 181  LKAIGSFLEF--TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238
            ++ +G+  E   ++D   +  +R  +P +L V +  +  G+ D +   F++F+  + +  
Sbjct: 184  VQGLGAIAEVLESDDKKLLHAYRATLPGMLLVLQDVVQVGDVDASKQVFDVFNTFLIASG 243

Query: 239  PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298
             ++  ++ +I+     +++S  ++   R  A+  I    ++K   L+  KL  P++  + 
Sbjct: 244  AIISKALGNIIEIITGIANSKQVDDEIRCMALSFIISCIRFKSRKLQALKLGKPLVLTLM 303

Query: 299  PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAA 357
             +  E      D+D  P R A   ID ++ +L+   VF P+FE A    Q+    YR+AA
Sbjct: 304  EVATEETTDDIDED-CPARLALRSIDLLSTHLSPSQVFYPMFEAACAFSQSPQASYRKAA 362

Query: 358  VTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417
            + +IG+  EG +E +   L ++  I++  L D +  VR AA  AL Q A  +  E+  H+
Sbjct: 363  LLSIGVAVEGSSESVAGNLPNIFPIIINGLCDNDMDVRQAALLALSQIAVEIPTEVSKHH 422

Query: 418  ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNL 476
              +LP +   +  +  +V + +   + A  E + + EI  +L  LM +L+  LE S    
Sbjct: 423  AQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLPMLMERLVGLLEFSDTPD 482

Query: 477  QETCMSAIGSVAAAAEQ-AFIPYAERVL-ELLKIFMVLTNDEDLRSRARATELLGLVAES 534
             ++C++A    AA A Q  FIPY ER +  L +      +DE    R    + LG +A +
Sbjct: 483  IKSCVAAAIGSAAFAAQDDFIPYFERTMASLSQCLHTTDDDEGYELRGTVMDTLGAIANA 542

Query: 535  VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594
            VG+    P     ++ A  G  ++ S LRE +  F++ +A V ++ FA +L  +VP  F 
Sbjct: 543  VGKQAFLPYTEQLIQLAYEGIQIDHSRLRECSFCFYAVLARVYKEEFAPFLEHIVPALFK 602

Query: 595  SCNLDDGSAVD--IDGSDDENING-FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651
            S + D+   +   I     E I+     V +++E + E   + + V + +  EK  A  A
Sbjct: 603  SIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNSAIAMEKEIAADA 662

Query: 652  LGLFALHTKSSYAPFLEESLKIL----SH-NEGPAKAR---------------------- 684
            LG   ++  + + P+LE +++ L    +H  EG  K+                       
Sbjct: 663  LGEICMYVGAPFTPYLEPTVEKLVACTTHFYEGVRKSALSSLWRCATTYYKVCNVPQWQP 722

Query: 685  ------EILDTVMNIF-------IRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS 731
                   + DTV NIF         T+ E+ +K V      +  E I   G + +     
Sbjct: 723  GLPLKVPVPDTVKNIFEAVRKCTFDTLEEEYEKTVATDILRNFAESIKTCGPVVLGDDYE 782

Query: 732  RLVDATLLLLREESTCQQPDN-DSDIEDD--------DDTAHDEVIMDAVSDLLPAFAKS 782
            +L +  + +L+++   Q  D  D D E++        DDT  D +++D+  D++ A A +
Sbjct: 783  KLCEVVMEVLQKQHIVQAGDVFDDDFEEEDIVSNEEVDDTEQDALLIDSACDVVIALAVA 842

Query: 783  MGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLK 842
            +G  FA  F   +  ++K+  S     +R M VA + EVA  + S I  +   V  L + 
Sbjct: 843  LGGSFADSFKVFYPQIVKYYMSKNG-NERAMAVACVGEVAGGIESAITPFTRDVFSLFMA 901

Query: 843  ELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAV 902
             L   +   R NAA+ +G LC+   E     Y +IL+ L P F       A+ DNA G +
Sbjct: 902  ALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQPFFTQEVFRTAL-DNAIGCI 960

Query: 903  ARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVN 962
            +R+I+ N  +IP++QVLP++   LPLKED+ E+  +Y+ I  L    NP ++  + EL+ 
Sbjct: 961  SRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMILALYRQQNPCLVQHLGELIP 1020

Query: 963  LFAEVVV-SPEE-SSEVKSQV 981
            +FA V+  SPE+ + E++S++
Sbjct: 1021 VFASVLTGSPEQLNDELRSEL 1041
Required for nuclear protein import, its predominant substrate seems to be ribosomal proteins. Binds to nucleoporins and the GTP-bound form of gsp1 (Ran).
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q8VI75|IPO4_MOUSE Importin-4 OS=Mus musculus GN=Ipo4 PE=1 SV=1 Back     alignment and function description
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function description
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
2254479591048 PREDICTED: probable importin subunit bet 0.999 0.970 0.836 0.0
2241013431048 predicted protein [Populus trichocarpa] 0.999 0.970 0.833 0.0
3565584851048 PREDICTED: probable importin subunit bet 0.999 0.970 0.816 0.0
3565287991048 PREDICTED: probable importin subunit bet 0.999 0.970 0.816 0.0
2241090241048 predicted protein [Populus trichocarpa] 0.999 0.970 0.827 0.0
4494570551046 PREDICTED: probable importin subunit bet 0.996 0.969 0.810 0.0
1477785671028 hypothetical protein VITISV_007422 [Viti 0.979 0.969 0.807 0.0
223289821048 armadillo/beta-catenin-like repeat-conta 0.999 0.970 0.767 0.0
2977992101048 importin beta-2 subunit family protein [ 0.999 0.970 0.765 0.0
2181924741047 hypothetical protein OsI_10833 [Oryza sa 0.996 0.968 0.739 0.0
>gi|225447959|ref|XP_002267673.1| PREDICTED: probable importin subunit beta-4 [Vitis vinifera] gi|298204504|emb|CBI23779.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1797 bits (4654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1049 (83%), Positives = 949/1049 (90%), Gaps = 32/1049 (3%)

Query: 1    MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
            MAQSLELLLIQFLMPDNDARRQAE+QIKRLAKDPQV+PAL+ HLRTAKTPNVRQL+AVLL
Sbjct: 1    MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALIHHLRTAKTPNVRQLSAVLL 60

Query: 61   RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
            RKKITGHWAKLSPQL+ LVKQSLIESIT+EHS PVRRASANVVSI+AKYAVPAGEWPDLL
Sbjct: 61   RKKITGHWAKLSPQLRHLVKQSLIESITMEHSPPVRRASANVVSIVAKYAVPAGEWPDLL 120

Query: 121  PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
            PFLFQ SQS QE+HREVALILFSSLTETIG  FRPHFAD+QALLLKCLQDETSNRVR+AA
Sbjct: 121  PFLFQCSQSAQEDHREVALILFSSLTETIGIAFRPHFADLQALLLKCLQDETSNRVRVAA 180

Query: 181  LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
            LKA+GSFLEFT DGAEVVKFREFIPSILNVSRQCLASGEEDVA+IAFEIFDELIESPAPL
Sbjct: 181  LKAVGSFLEFTQDGAEVVKFREFIPSILNVSRQCLASGEEDVAIIAFEIFDELIESPAPL 240

Query: 241  LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
            LGDSVKSIV FSL+V SS NLE NTRHQAIQIISWLAKYK NSLKKHKLVIPILQVMCPL
Sbjct: 241  LGDSVKSIVQFSLDVCSSQNLESNTRHQAIQIISWLAKYKSNSLKKHKLVIPILQVMCPL 300

Query: 301  LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
            LAES    EDDDLAPDRAAAEVIDTMALNL+KH+FPPVFEFAS+S Q+A+PKYREA+ T 
Sbjct: 301  LAESANGDEDDDLAPDRAAAEVIDTMALNLSKHMFPPVFEFASLSSQSANPKYREASATV 360

Query: 361  IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
            +G+ISEGC + MK+KLE +LHIVLGALRDPEQ VRGAASFALGQFAE+LQPEIVSHYESV
Sbjct: 361  LGVISEGCLDLMKDKLEPILHIVLGALRDPEQMVRGAASFALGQFAEHLQPEIVSHYESV 420

Query: 421  LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
            LPCILNALED SDEVKEKSYYALAAFCE+MGEEILPFLDPLMGKLLAAL+NSPRNLQETC
Sbjct: 421  LPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMGKLLAALQNSPRNLQETC 480

Query: 481  MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
            MSAIGSVAAAAEQAF+PYAERVLEL+K FMVLTNDEDLRSRARATEL+G+VA SVGR +M
Sbjct: 481  MSAIGSVAAAAEQAFVPYAERVLELMKNFMVLTNDEDLRSRARATELVGMVAMSVGRIKM 540

Query: 541  EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
            EPILPPF+EAAISGF LEFSELREYTHGFFSN+A +++D F QYLP VVPLAFSSCNLDD
Sbjct: 541  EPILPPFIEAAISGFALEFSELREYTHGFFSNLAEIMDDSFTQYLPHVVPLAFSSCNLDD 600

Query: 601  GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
            GSAVDID SDDENINGFGGVSSDDEAH E  VRNIS+RTGVLDEKAAATQALGLFALHTK
Sbjct: 601  GSAVDIDESDDENINGFGGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFALHTK 660

Query: 661  SSYAPFLEESLKIL-------------------------------SHNEGPAKAREILDT 689
             SYAP+LEESLKIL                                HNEGPAKA+EI+DT
Sbjct: 661  GSYAPYLEESLKILVRHSGYFHEDVRLQAIIALKYMLTAAEAVFQGHNEGPAKAKEIIDT 720

Query: 690  VMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQ 749
            VMNI+I+TMTEDDDK+VVAQAC S  EII D+GYMAVEPYM +LV+ATL+LLREES CQQ
Sbjct: 721  VMNIYIKTMTEDDDKEVVAQACMSTAEIIKDFGYMAVEPYMPQLVEATLVLLREESACQQ 780

Query: 750  PDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQ 809
             ++DSDI DD+DT HDEV+MDAVSDLLPAFAKSMGPHFAP FA LF+PLMKFAKSSRP Q
Sbjct: 781  QESDSDI-DDNDTEHDEVLMDAVSDLLPAFAKSMGPHFAPTFATLFNPLMKFAKSSRPPQ 839

Query: 810  DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGES 869
            DRTMVVA LAEVA+DMG+PIA YVD +MPLVLKELAS +A NRRNAAFCVGELCKNGGES
Sbjct: 840  DRTMVVACLAEVAQDMGAPIAGYVDALMPLVLKELASSEATNRRNAAFCVGELCKNGGES 899

Query: 870  ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLK 929
             LKYYGDILRGLYPLFG+SEPDDAVRDNAAGAVARMIMV+P++IPLNQVLPV LKVLPLK
Sbjct: 900  TLKYYGDILRGLYPLFGESEPDDAVRDNAAGAVARMIMVHPEAIPLNQVLPVFLKVLPLK 959

Query: 930  EDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEESSEVKSQVGMAFSHLI 989
            ED EES+AV+ C+  LV++SNPQIL+LVP+LVNLFA+V  SP E+SEVK+QVG AFSHLI
Sbjct: 960  EDREESIAVFTCVCNLVVASNPQILALVPDLVNLFAQVAASPVETSEVKAQVGRAFSHLI 1019

Query: 990  SLYGQQMQPLLSNLSPAHATALAAFAPKS 1018
            SLYG QMQPLLSNLSP HA ALAAFAPKS
Sbjct: 1020 SLYGHQMQPLLSNLSPVHANALAAFAPKS 1048

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101343|ref|XP_002312242.1| predicted protein [Populus trichocarpa] gi|222852062|gb|EEE89609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356558485|ref|XP_003547537.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|356528799|ref|XP_003532985.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|224109024|ref|XP_002315055.1| predicted protein [Populus trichocarpa] gi|222864095|gb|EEF01226.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457055|ref|XP_004146264.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] gi|449495557|ref|XP_004159877.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147778567|emb|CAN76102.1| hypothetical protein VITISV_007422 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22328982|ref|NP_194494.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|17065302|gb|AAL32805.1| putative protein [Arabidopsis thaliana] gi|38564254|gb|AAR23706.1| At4g27640 [Arabidopsis thaliana] gi|332659973|gb|AEE85373.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799210|ref|XP_002867489.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297313325|gb|EFH43748.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218192474|gb|EEC74901.1| hypothetical protein OsI_10833 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
TAIR|locus:21377171048 AT4G27640 "AT4G27640" [Arabido 0.662 0.643 0.832 0.0
ZFIN|ZDB-GENE-041014-3071085 ipo4 "importin 4" [Danio rerio 0.593 0.556 0.307 2e-98
DICTYBASE|DDB_G02703361103 ipo4 "importin 4" [Dictyosteli 0.653 0.602 0.283 2.2e-93
POMBASE|SPBC14F5.03c1067 kap123 "karyopherin Kap123" [S 0.655 0.625 0.270 1e-86
UNIPROTKB|E2RSV01079 IPO4 "Uncharacterized protein" 0.455 0.430 0.286 3.9e-72
MGI|MGI:19230011082 Ipo4 "importin 4" [Mus musculu 0.474 0.446 0.280 2.5e-70
UNIPROTKB|Q8TEX91081 IPO4 "Importin-4" [Homo sapien 0.456 0.430 0.283 3.7e-70
RGD|13052061083 Ipo4 "importin 4" [Rattus norv 0.474 0.445 0.274 8.7e-69
UNIPROTKB|A4IFB81081 IPO4 "IPO4 protein" [Bos tauru 0.533 0.502 0.276 3.9e-68
UNIPROTKB|F1SGN41079 IPO4 "Uncharacterized protein" 0.447 0.422 0.280 1.1e-67
TAIR|locus:2137717 AT4G27640 "AT4G27640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2866 (1013.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 561/674 (83%), Positives = 629/674 (93%)

Query:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
             MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL
Sbjct:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60

Query:    61 RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
             RK+ITGHWAKLSPQLKQ VKQSLIESIT+E+S PVRRASANVVS++AKYAVPAGEWPDLL
Sbjct:    61 RKRITGHWAKLSPQLKQHVKQSLIESITVENSPPVRRASANVVSVVAKYAVPAGEWPDLL 120

Query:   121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
              FLFQ SQS QE+HREVALILFSSLTETIG TFRP+FAD+QALLLKC+QDE+S+RVR+AA
Sbjct:   121 TFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVAA 180

Query:   181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
             LKA+GSFLEFTNDG EVVKFR+FIPSIL+VSR+C+ASGEEDVA++AFEIFDELIESPAPL
Sbjct:   181 LKAVGSFLEFTNDGDEVVKFRDFIPSILDVSRKCIASGEEDVAILAFEIFDELIESPAPL 240

Query:   241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
             LGDSVK+IV FSLEVS + NLE +TRHQAIQI+SWLAKYKYNSLKKHKLVIPILQVMCPL
Sbjct:   241 LGDSVKAIVQFSLEVSCNQNLESSTRHQAIQIVSWLAKYKYNSLKKHKLVIPILQVMCPL 300

Query:   301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
             LAES++  +DDDLAPDRA+AEVIDT+A+NL KHVF PV EFASV CQ+ + K+REA+VTA
Sbjct:   301 LAESSDQEDDDDLAPDRASAEVIDTLAMNLPKHVFLPVLEFASVHCQSTNLKFREASVTA 360

Query:   361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
             +G+ISEGC + MKEKL++VL+IVLGALRDPE  VRGAASFA+GQFAE+LQPEI+SHY+SV
Sbjct:   361 LGVISEGCFDLMKEKLDTVLNIVLGALRDPELVVRGAASFAIGQFAEHLQPEILSHYQSV 420

Query:   421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
             LPC+L A+ED S+EVKEKS+YALAAFCE+MGEEI+P LD LMGKL+AALENSPRNLQETC
Sbjct:   421 LPCLLIAIEDTSEEVKEKSHYALAAFCENMGEEIVPLLDHLMGKLMAALENSPRNLQETC 480

Query:   481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
             MSAIGSVAAAAEQAF PYAERVLEL+K FMVLT DEDLR+RAR+TEL+G+VA SVGR  M
Sbjct:   481 MSAIGSVAAAAEQAFNPYAERVLELMKFFMVLTKDEDLRARARSTELVGIVAMSVGRKGM 540

Query:   541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
             E ILPPF++AAISGF LEFSELREYTHGFFSN+A +L+D FAQYLP V+PL F+SCNLDD
Sbjct:   541 EAILPPFIDAAISGFELEFSELREYTHGFFSNVAEILDDTFAQYLPRVMPLVFASCNLDD 600

Query:   601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
             GSAVDID SDDEN+N FGGVSSDD+A  E  VRNISVRTGVLDEKAAATQALGLFALHTK
Sbjct:   601 GSAVDIDESDDENVNDFGGVSSDDDADDEPRVRNISVRTGVLDEKAAATQALGLFALHTK 660

Query:   661 SSYAPFLEESLKIL 674
             S++AP+LEESLKI+
Sbjct:   661 SAFAPYLEESLKIM 674
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
ZFIN|ZDB-GENE-041014-307 ipo4 "importin 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270336 ipo4 "importin 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC14F5.03c kap123 "karyopherin Kap123" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSV0 IPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1923001 Ipo4 "importin 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TEX9 IPO4 "Importin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305206 Ipo4 "importin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFB8 IPO4 "IPO4 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGN4 IPO4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 3e-24
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 6e-13
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 5e-11
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 3e-05
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 3e-05
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 1e-04
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 0.002
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  109 bits (274), Expect = 3e-24
 Identities = 129/651 (19%), Positives = 235/651 (36%), Gaps = 76/651 (11%)

Query: 13  LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAVLLRKKITGH-- 67
           L PD +AR +AE Q+  L      Q +  LVQ L    +   +R +A ++L+  +  +  
Sbjct: 15  LSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDP 74

Query: 68  ---------WAKLSPQLKQLVKQSLIESITLEHSAP-VRRASANVVSIIAKYAVPAGEWP 117
                    W  +  + K+ VK   +    L+   P     +A +++ IA+  +P   WP
Sbjct: 75  ELQKGCSQRWLGMRHESKEQVKGMALR--ALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132

Query: 118 DLLPFLFQFSQSEQEEH--REVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSN 174
            L+  + +    EQ      E   I          +         + A+++  L++ET++
Sbjct: 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTS 192

Query: 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234
            VR+AALKA+   L F         + E     + V  +     +E++   AF   ++++
Sbjct: 193 AVRLAALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249

Query: 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW--------------LAKYK 280
                L    ++S +  +L   +   ++      AIQ + +                   
Sbjct: 250 M----LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305

Query: 281 YNSLKKHKL----VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP 336
               + H      V  +L  +  LL +  E    DD  P  AA+  +   A      +  
Sbjct: 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR 365

Query: 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVR 395
           PV  F   + ++ S   REAAV A G +  G  E    K+    L  +   + D   +V+
Sbjct: 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425

Query: 396 GAASFALGQFAEYLQPEIVS---HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452
              ++  G  A+++   I+S   H    +   L  L D        S +      + + +
Sbjct: 426 STTAWCFGAIADHV-AMIISPCGHLVLEVSASLIGLMDCPFRSINCS-WRKENLVDHIAK 483

Query: 453 E-------ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
                   +  F   ++  L+   E   +  NL+ +  SA+G++      A         
Sbjct: 484 AVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543

Query: 504 -----ELLKIFMVLTNDEDLRSRARATELLG---LVAESVGRARMEPILPPFVEAAISGF 555
                +L +   VL        +    EL      V E++ R R   I    VE  +   
Sbjct: 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED--VEDQLMEL 601

Query: 556 GLEFSELREYTHGF------FSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
            +   E  + T  F       S ++  LE+ F QY    +P    + N  D
Sbjct: 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTD 652

Length = 858
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1018
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG18241233 consensus TATA-binding protein-interacting protein 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.98
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.97
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.97
COG5656970 SXM1 Importin, protein involved in nuclear import 99.94
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.93
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.92
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.92
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.9
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.88
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.87
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.87
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.87
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.87
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.82
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.8
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.8
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.79
KOG1242569 consensus Protein containing adaptin N-terminal re 99.76
KOG1242569 consensus Protein containing adaptin N-terminal re 99.75
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.72
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.64
PTZ00429746 beta-adaptin; Provisional 99.64
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.61
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.61
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.6
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.59
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.58
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.55
PTZ00429746 beta-adaptin; Provisional 99.49
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.48
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.48
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.42
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.39
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.38
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.36
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.34
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.34
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.32
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.3
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.3
PRK09687280 putative lyase; Provisional 99.27
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.25
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.24
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.23
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.22
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.2
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.17
KOG0414 1251 consensus Chromosome condensation complex Condensi 99.17
PRK09687280 putative lyase; Provisional 99.16
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.1
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.09
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.09
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.06
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.05
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 99.01
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 98.99
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.98
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 98.95
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.93
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.9
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.88
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.87
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.86
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.86
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.85
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.83
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.82
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.82
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.8
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.78
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.77
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.74
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.61
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.58
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.56
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.53
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.47
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.45
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.44
PF05804708 KAP: Kinesin-associated protein (KAP) 98.43
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.41
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.4
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.35
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.32
KOG2956516 consensus CLIP-associating protein [General functi 98.28
KOG2956516 consensus CLIP-associating protein [General functi 98.26
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.25
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.24
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.24
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 98.23
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.23
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.22
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.2
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.19
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.18
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.16
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.1
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.07
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.07
PF04510174 DUF577: Family of unknown function (DUF577); Inter 98.06
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.06
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.05
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.03
PF05804708 KAP: Kinesin-associated protein (KAP) 98.02
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.02
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.01
COG5656970 SXM1 Importin, protein involved in nuclear import 98.0
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.98
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.98
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 97.92
PF05004309 IFRD: Interferon-related developmental regulator ( 97.89
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.87
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.86
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.85
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.81
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.78
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.78
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.78
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.76
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.74
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.74
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.73
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.73
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.72
KOG04131529 consensus Uncharacterized conserved protein relate 97.71
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.71
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.71
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.67
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.64
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.63
PF05004309 IFRD: Interferon-related developmental regulator ( 97.63
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 97.62
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.6
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.59
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 97.59
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.58
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.58
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.57
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.56
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.51
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.49
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.48
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.47
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.43
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.41
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.4
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.39
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.35
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.34
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.33
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.31
KOG18511710 consensus Uncharacterized conserved protein [Funct 97.24
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.23
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.22
TIGR02270410 conserved hypothetical protein. Members are found 97.15
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.14
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.11
PF05536543 Neurochondrin: Neurochondrin 97.1
TIGR02270410 conserved hypothetical protein. Members are found 97.09
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.08
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.07
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.07
KOG2025892 consensus Chromosome condensation complex Condensi 97.04
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 97.02
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.01
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.99
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.98
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.97
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 96.95
KOG18371621 consensus Uncharacterized conserved protein [Funct 96.95
KOG1048717 consensus Neural adherens junction protein Plakoph 96.94
COG5116926 RPN2 26S proteasome regulatory complex component [ 96.89
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.82
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.8
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.78
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 96.76
PF05536543 Neurochondrin: Neurochondrin 96.7
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.65
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 96.56
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.53
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.48
KOG0413 1529 consensus Uncharacterized conserved protein relate 96.47
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 96.4
KOG2025892 consensus Chromosome condensation complex Condensi 96.36
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 96.33
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.33
KOG2137 700 consensus Protein kinase [Signal transduction mech 96.22
KOG1243690 consensus Protein kinase [General function predict 96.2
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.19
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.15
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.12
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.03
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.95
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.91
KOG15171387 consensus Guanine nucleotide binding protein MIP1 95.89
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.87
KOG0567289 consensus HEAT repeat-containing protein [General 95.72
KOG2549576 consensus Transcription initiation factor TFIID, s 95.56
KOG18371621 consensus Uncharacterized conserved protein [Funct 95.52
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.49
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.49
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.37
KOG0567289 consensus HEAT repeat-containing protein [General 95.35
KOG2137700 consensus Protein kinase [Signal transduction mech 95.09
COG5116926 RPN2 26S proteasome regulatory complex component [ 95.08
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.07
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.03
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.65
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.63
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.57
KOG1243690 consensus Protein kinase [General function predict 94.54
KOG3961262 consensus Uncharacterized conserved protein [Funct 94.53
KOG1222791 consensus Kinesin associated protein KAP [Intracel 94.46
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 94.41
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 94.32
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 94.23
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.18
PF12726727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 94.16
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.06
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 93.97
KOG2549576 consensus Transcription initiation factor TFIID, s 93.95
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 93.74
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 93.61
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 93.58
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.54
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 93.45
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 93.41
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 93.22
KOG18511710 consensus Uncharacterized conserved protein [Funct 93.18
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 93.17
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 93.15
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.07
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 92.91
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.66
KOG3961262 consensus Uncharacterized conserved protein [Funct 92.64
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 92.56
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 92.52
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 92.42
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 92.34
COG5218885 YCG1 Chromosome condensation complex Condensin, su 91.81
PF14222552 MOR2-PAG1_N: Cell morphogenesis N-terminal 91.8
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 91.76
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 91.69
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 91.53
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 91.46
KOG2081559 consensus Nuclear transport regulator [Intracellul 91.45
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 91.26
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 91.13
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 91.0
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 90.98
KOG1048717 consensus Neural adherens junction protein Plakoph 90.83
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.7
COG50981128 Chromosome condensation complex Condensin, subunit 90.63
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 90.35
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 90.32
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 90.05
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 90.0
cd03561133 VHS VHS domain family; The VHS domain is present i 89.94
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 89.75
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 89.64
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 89.08
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 89.05
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 88.88
PF08146153 BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295 88.64
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.6
PF14868559 DUF4487: Domain of unknown function (DUF4487) 88.55
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 88.46
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 88.23
COG5098 1128 Chromosome condensation complex Condensin, subunit 87.94
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 87.46
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 87.39
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 87.25
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 87.03
cd03561133 VHS VHS domain family; The VHS domain is present i 86.85
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 86.84
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 86.55
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 86.45
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 86.38
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 86.03
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 85.29
PF11701157 UNC45-central: Myosin-binding striated muscle asse 85.13
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 84.91
KOG4199461 consensus Uncharacterized conserved protein [Funct 84.85
KOG18481610 consensus Uncharacterized conserved protein [Funct 84.75
KOG3036293 consensus Protein involved in cell differentiation 84.37
KOG2038988 consensus CAATT-binding transcription factor/60S r 84.1
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 84.02
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 83.42
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 82.76
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 82.68
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 82.68
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 82.67
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 82.4
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 82.3
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 82.29
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 82.0
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 81.82
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 81.5
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 80.81
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-126  Score=1051.31  Aligned_cols=1005  Identities=35%  Similarity=0.577  Sum_probs=892.7

Q ss_pred             hHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhhhccCCHHHHHHHHH
Q 001749            2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ   81 (1018)
Q Consensus         2 ~~~l~~~l~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~~l~~~~~~~~R~~a~~~l~~~i~~~w~~l~~~~~~~i~~   81 (1018)
                      .++|.|+++++.||||++|++||+.|+....++.....|.+++.+++++++|++|++++||.+.++|+.++.+.++.||.
T Consensus         3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks   82 (1075)
T KOG2171|consen    3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS   82 (1075)
T ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            57899999999999999999999999977766668899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHcccCCCCCccchHHHHHHhhcCCChHHHHHHHHHHHHhhhhhhccccccHHHHH
Q 001749           82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ  161 (1018)
Q Consensus        82 ~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~  161 (1018)
                      .+|..+.+|+.+.||+++|++++.|++..+|. +||+++++++++.+|+++..|+.|+.+|..+.+.++..+.+|++.+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            99999999999999999999999999999986 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhhcccC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001749          162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL  240 (1018)
Q Consensus       162 ~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~  240 (1018)
                      ++|.++++| ++..||.+|+++++.++.+.+ ++.....++.++|.+++++...+++++.+....++++|.++++..+++
T Consensus       162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            999999999 555599999999999999884 556788999999999999999999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhHHHhhhc-CChHHHHHHHhhhhccCCCC---------CCC
Q 001749          241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED  310 (1018)
Q Consensus       241 ~~~~~~~li~~l~~~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~~~~d---------~~d  310 (1018)
                      +++++.++++++++++.|++.++.+|..|++++.+++++.|.+.++. ++..++++.++.+|++.++|         ++|
T Consensus       241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded  320 (1075)
T KOG2171|consen  241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED  320 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence            99999999999999999999999999999999999999999888764 47788999999999876544         123


Q ss_pred             CCCcHHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhHHHHHHHHHHHHhhcChHHHHHhHHHHHHHHHhhcCC
Q 001749          311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD  389 (1018)
Q Consensus       311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~l~~~l~~~l~d  389 (1018)
                      +..++...|.+++++++.++| +.++|++++.+..++.|++|+.|+|++++|+.+++||.+.+..++++++++++++|+|
T Consensus       321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND  400 (1075)
T ss_pred             cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence            336789999999999999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhHhhcCHHHHHhh-hhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhh-ccccccchHHHHH-HH
Q 001749          390 PEQFVRGAASFALGQFAEYLQPEIVSHY-ESVLPCILNALEDES-DEVKEKSYYALAAFCEDM-GEEILPFLDPLMG-KL  465 (1018)
Q Consensus       390 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~-~~~l~~l~~~l~~~~-~~v~~~a~~al~~l~~~~-~~~~~~~~~~l~~-~l  465 (1018)
                      ++|+||++||.++|++++.++|.+++++ +.+.|.|+..+.+.. ++|+.+|+.++.+|.+.+ ++.+.||++.+|+ .+
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998755 566668888887764 689999999999999988 6678899999999 55


Q ss_pred             HHhhcCCCHhHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccCchhhh-hHHHHHHHHHHHHHhhhhhhcCCCh
Q 001749          466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLR-SRARATELLGLVAESVGRARMEPIL  544 (1018)
Q Consensus       466 ~~~l~~~~~~vr~~al~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~-~r~~a~~~l~~l~~~~g~~~~~~~~  544 (1018)
                      ..+++++++.+|+.++.+||+++.++++.|.||++.+||.|++++++.++++.+ +|+++++|++.+++++|++.|.|+.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            566677789999999999999999999999999999999999999988766655 7999999999999999999999999


Q ss_pred             HHHHHHHHhcc---CCCChhHHHHHHHHHHHHHHHcccCcccchhhhhHHHHhhccCCCCCccCCCCCchhhcccCCCCC
Q 001749          545 PPFVEAAISGF---GLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS  621 (1018)
Q Consensus       545 ~~l~~~l~~~l---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (1018)
                      .++|+.++...   ..+++..+++.+.+|++||+++|++|.||++.++|.++++++.+++.... +++|+++.++..+++
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~-d~~d~e~~~~~~~~e  639 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALS-DEEDEEEEQDLDGWE  639 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCc-Cchhhhhccccccch
Confidence            99999998863   34577899999999999999999999999999999999999988765433 333333333333332


Q ss_pred             CCcchhhccccc-ceeeecccchhHHHHHHHHHHHHHHccccCcchHHHHHHHh--------------------------
Q 001749          622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKIL--------------------------  674 (1018)
Q Consensus       622 ~~~~~~~~~~~~-~~~i~t~~~~~k~~a~~~l~~~~~~~~~~~~p~~~~~~~~l--------------------------  674 (1018)
                      .     .+.+.+ .++|+|+.+++|+.|+.+|+.++..++.+|.||+++++...                          
T Consensus       640 ~-----~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~  714 (1075)
T KOG2171|consen  640 V-----VELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC  714 (1075)
T ss_pred             h-----hccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            1     122223 89999999999999999999999999999999999998822                          


Q ss_pred             ---hcCCChhHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHHHHhhhhh-hcC
Q 001749          675 ---SHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVE-PYMSRLVDATLLLLREEST-CQQ  749 (1018)
Q Consensus       675 ---~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~l~~~i~~~g~~~~~-~~~~~i~~~l~~~l~~~~~-~~~  749 (1018)
                         .-..++..+..+|..+++.++..+..|++.+++..++++++.+++.+|+..+. +.+..+...+...+..... ++.
T Consensus       715 ~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~  794 (1075)
T KOG2171|consen  715 ALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQD  794 (1075)
T ss_pred             HHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence               01346678899999999999999999999999999999999999999988764 5666666665554443322 222


Q ss_pred             CCCC--CCCCC----cCCchhhHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhccCCCccchhhhhHhHHHHHh
Q 001749          750 PDND--SDIED----DDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVAR  823 (1018)
Q Consensus       750 ~~~~--~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~a~~~l~~~~~  823 (1018)
                      ...+  +++++    ++-.|.+..+++.+.+++..+.+..|+.|.++|..++|.+.+++.++.+.. |++|+|+++++++
T Consensus       795 r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie  873 (1075)
T KOG2171|consen  795 RQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIE  873 (1075)
T ss_pred             hhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHH
Confidence            1111  11111    111256778999999999999999999999999999999999999998877 9999999999999


Q ss_pred             hcCcchHhhHHhhHHHHHHhcCCCChHHHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhccCC----CCCCchhHhHHH
Q 001749          824 DMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGD----SEPDDAVRDNAA  899 (1018)
Q Consensus       824 ~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~----~~~~~~~~~na~  899 (1018)
                      ++|+...+|.+.++|.++.++.|++++||++|+||+|.+++++++.+.+.....++.|..++..    .+++..++||++
T Consensus       874 ~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~  953 (1075)
T KOG2171|consen  874 GCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAI  953 (1075)
T ss_pred             hcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999998877777777777777654    256778999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcChhhhh----hhhHHHHHHHHHhcCCC-CC
Q 001749          900 GAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILS----LVPELVNLFAEVVVSPE-ES  974 (1018)
Q Consensus       900 ~al~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~----~~~~il~~~~~~~~~~~-~~  974 (1018)
                      +|++||+.++|..+|+++++|.|+++||+.+|.+|+...|++|+.||+++||.+.+    ++|+|+.+++..+.++. ..
T Consensus       954 gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~ 1033 (1075)
T KOG2171|consen  954 GAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEP 1033 (1075)
T ss_pred             HHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCc
Confidence            99999999999999999999999999999999999999999999999999999986    99999999999998764 33


Q ss_pred             hHHHHHHHHHHHHHHHHhHhhHHHHHhcCCHHHHHHHHhhcC
Q 001749          975 SEVKSQVGMAFSHLISLYGQQMQPLLSNLSPAHATALAAFAP 1016 (1018)
Q Consensus       975 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 1016 (1018)
                      +++..+++++++++.. .+++|.++++.||++++.+||.+++
T Consensus      1034 ~~~~~r~~~ilkq~~~-~~~~~~~~~~~L~~~~~~~lq~~~~ 1074 (1075)
T KOG2171|consen 1034 RSTLARVIEILKQFLA-PPSQFAALLATLPPDQQQALQAVLN 1074 (1075)
T ss_pred             cchHHHHHHHHHHHhc-CHHHHHHHHHhCCHHHHHHHHHHhc
Confidence            4455589999999988 8899999999999999999999875

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins [] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
2bpt_A861 Structure Of The Nup1p:kap95p Complex Length = 861 2e-16
3nd2_A861 Structure Of Yeast Importin-Beta (Kap95p) Length = 3e-16
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-12
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 4e-11
2p8q_A876 Crystal Structure Of Human Importin Beta Bound To T 2e-10
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 3e-10
1qgk_A876 Structure Of Importin Beta Bound To The Ibb Domain 4e-10
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 4e-10
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 1e-09
1ukl_A876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 2e-09
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 2e-08
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 4e-06
2qna_A762 Crystal Structure Of Human Importin-Beta (127-876) 5e-05
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 8e-05
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 117/533 (21%), Positives = 213/533 (39%), Gaps = 92/533 (17%)
Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTP-NVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63
Query: 59  LLRKKITG-----------HW-AKLSPQLKQLVK-QSLIESITLEHSAPVRRASANVVSI 105
            L+ ++              W  ++SP+ K  +K  +L   +++E       A       
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123
Query: 106 IAKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALL 164
             +  +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L
Sbjct: 124 DIE--LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181
Query: 165 LKCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220
           +  +Q     ETS  VR+AAL A+   L F  +  E    R ++  ++     C A+  E
Sbjct: 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV-----CEATQAE 236
Query: 221 DVAV--IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW--- 275
           D+ V   AF    +++      +   ++  + ++L +++  +  PN +  ++ +  W   
Sbjct: 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKS--PNDKVASMTVEFWSTI 293
Query: 276 ----------LAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAE 321
                     LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A  
Sbjct: 294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381
            +   A N   H+  PV EF   +    + + REAAV A G I +G              
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-------------- 399
Query: 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYY 441
                   P++  R                    +    LP ILN + D+S +VKE + +
Sbjct: 400 --------PDKVQR------------------TYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 442 ALAAFCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAE 492
            +    + + E I P   L  ++   L  L++ P+       + I  V   AE
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-115
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 6e-22
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 2e-21
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-113
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-47
1qgr_A876 Protein (importin beta subunit); transport recepto 4e-96
1qgr_A 876 Protein (importin beta subunit); transport recepto 2e-22
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 8e-72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 6e-06
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 8e-41
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 6e-31
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-23
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-15
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 9e-30
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-07
2x19_B963 Importin-13; nuclear transport, protein transport; 2e-27
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 9e-22
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 9e-05
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-18
2x1g_F971 Cadmus; transport protein, developmental protein, 2e-15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-14
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-04
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 2e-14
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 6e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 2e-08
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 5e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 2e-07
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 2e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-07
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 8e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 8e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 1e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 6e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 4e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 2e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 8e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  375 bits (963), Expect = e-115
 Identities = 156/889 (17%), Positives = 321/889 (36%), Gaps = 96/889 (10%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGH------------WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++                 ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281
           V   AF    +++      +   ++  + ++L +++  +         ++  S + + + 
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 282 NSLKKHKLVIP---------------ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326
           +   +                     ++  +  LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYAL 443
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D   +V     + +
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTI 477

Query: 444 AAFCEDMGEE----ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIP 497
               E + E     I  F   L+  L+ A    ++  N + +  SA+ ++   A      
Sbjct: 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAE 537

Query: 498 YAERVLELLKIFM---------VLTNDEDLRSRARATELLGLVAESVGR--ARMEPILPP 546
            +  +   +   +          LT ++    +   + +L ++A  + +  + +EP+   
Sbjct: 538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM 597

Query: 547 FVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDG---- 601
            +          + + + +      S +A  L  GF +YL    P    + N  D     
Sbjct: 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSI 657

Query: 602 SAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661
           +AV        ++          +A      + IS      + K A     G  A +  +
Sbjct: 658 TAVGFIADISNSL--EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715

Query: 662 SYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTE--DDDKDVVAQACTSIVEIIN 719
            + P+L + + +              +T          +      + V  A   IV  ++
Sbjct: 716 DFIPYLNDIMALC---------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766

Query: 720 DYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAF 779
           D    A+ PY+  +      +            D  +  +D T+     +  + D+   F
Sbjct: 767 DKP-EALFPYVGTIFQFIAQVA----------EDPQLYSEDATS--RAAVGLIGDIAAMF 813

Query: 780 AKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLA--EVARDMG 826
                  F           +K  +S +     T   A  A  +  R + 
Sbjct: 814 PDGSIKQF--YGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1018
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 7e-67
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-15
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-62
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-42
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-60
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 8e-20
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 2e-50
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-46
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 6e-09
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-32
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-21
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-12
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-15
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 7e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-07
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-07
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-05
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 7e-07
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.001
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 0.004
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  239 bits (610), Expect = 7e-67
 Identities = 157/875 (17%), Positives = 307/875 (35%), Gaps = 84/875 (9%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKTP-NVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGHWA------------KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++    +            ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E  +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS------- 274
           V   AF    +++      +   ++  + ++L +++  +         ++  S       
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 275 ----WLAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDTM 326
                LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKE---KSY 440
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D             
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478

Query: 441 YALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--NLQETCMSAIGSVAAAAEQAFIPY 498
             +    E     I  F   L+  L+ A        N + +  SA+ ++   A       
Sbjct: 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538

Query: 499 AERVLELLKIFMVLTNDEDLRS-----RARATELLGLVAE--SVGRARMEPILPPFVEAA 551
           +  +   +   +  T   D             EL   +    +    +    + P  +  
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598

Query: 552 ISGFGLEF-----SELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGS--AV 604
           +  F         + + +      S +A  L  GF +YL    P    + N  D      
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSIT 658

Query: 605 DIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA 664
            +    D + +         +A      + IS      + K A     G  A +  + + 
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718

Query: 665 PFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYM 724
           P+L + + +           E        +   + E      V  A   IV  ++D    
Sbjct: 719 PYLNDIMALCV--AAQNTKPENGTLEALDYQIKVLEA-----VLDAYVGIVAGLHDKP-E 770

Query: 725 AVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMG 784
           A+ PY+  +      +            D  +  +D T+     +  + D+   F     
Sbjct: 771 ALFPYVGTIFQFIAQVA----------EDPQLYSEDATS--RAAVGLIGDIAAMFPDGSI 818

Query: 785 PHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLA 819
             F           +K  +S +     T   A  A
Sbjct: 819 KQF--YGQDWVIDYIKRTRSGQLFSQATKDTARWA 851
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1018
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.94
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.93
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.9
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.88
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.81
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.81
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.8
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.8
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.78
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.66
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.6
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.19
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.17
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.06
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.97
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.19
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.01
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.08
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.85
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.85
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 86.01
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 83.0
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=622.87  Aligned_cols=810  Identities=18%  Similarity=0.258  Sum_probs=642.2

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             689999999931999699999999999873598929999999812--999669999999999842200035897889999
Q 001749            2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLV   79 (1018)
Q Consensus         2 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~l~~il~~--~~~~~vR~~a~~~l~~~i~~~w~~l~~~~~~~i   79 (1018)
                      .++|.++|++++|||+++|++|+++|+++.++|++..+|..++.+  +.+..+|++|+++|||.+.++|..++++.+..|
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~I   89 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI   89 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             99999999976397999999999999997739989999999997457999899999999999999870023999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf             9999999730599879999999999997020789985104999999602888679999999999825653103-----41
Q 001749           80 KQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-----FR  154 (1018)
Q Consensus        80 ~~~Ll~~l~~e~~~~vr~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~~~s~~~~~r~~al~~l~~l~~~~~~~-----~~  154 (1018)
                      |..+++.+. ++++.+|+.++.+++.|++.+++ +.||++++.+.+.+.++++..+++++.+++.++++....     ..
T Consensus        90 k~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~  167 (888)
T d1qbkb_          90 KSECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLD  167 (888)
T ss_dssp             HHHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999982-99889999999999999987182-1129999999998679998999999999999999868876077888


Q ss_pred             CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             01999999999731999998999999999998661048814699998327999999999863198889999999999975
Q 001749          155 PHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI  234 (1018)
Q Consensus       155 ~~~~~l~~~l~~~l~d~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~a~~~L~~l~  234 (1018)
                      ...+.+++.+.+++.+ +++.+|..|+.++..++......     +...++.+++.+.....+++++++..+++++..+.
T Consensus       168 ~~~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~  241 (888)
T d1qbkb_         168 RPLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQA-----LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLL  241 (888)
T ss_dssp             CCSTTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCCCST-----TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTS
T ss_pred             HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             7999999999998638-88899999999877788740388-----99999999998887607930677999999999899


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----------
Q ss_conf             278500367599999999997308999968999999999999998288766158849899999532126-----------
Q 001749          235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAE-----------  303 (1018)
Q Consensus       235 ~~~~~~~~~~~~~li~~l~~~~~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~l~~-----------  303 (1018)
                      +..+..+.+++..++++++....+  .++++|..|+++|..+++.......-.++++.+++.+...+..           
T Consensus       242 ~~~~~~l~~~l~~i~~~~l~~~~~--~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~  319 (888)
T d1qbkb_         242 EVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD  319 (888)
T ss_dssp             CSCTTTTTTTTTTTTTTTTTTTTS--SCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             876788899888789999986289--868999988999999997164589999999999999998742126889988554


Q ss_pred             ------------------------------------------CCCCCCCCCCCHHHHHHHHHHHHHHHCCHHCHHHHHHH
Q ss_conf             ------------------------------------------89888887785799999999999987341110879988
Q 001749          304 ------------------------------------------SNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEF  341 (1018)
Q Consensus       304 ------------------------------------------~~~d~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~  341 (1018)
                                                                .++++.+++|+.|+++..+++.++..+++.+++.+++.
T Consensus       320 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~  399 (888)
T d1qbkb_         320 VEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPL  399 (888)
T ss_dssp             SSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66544214257777889999999998740111210231034454430011336999999987667651299999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH-HHHHHHH
Q ss_conf             885305999568889999999995229488998699999999861389975589999999999673207789-9765548
Q 001749          342 ASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEI-VSHYESV  420 (1018)
Q Consensus       342 l~~~l~~~~~~~r~aal~~l~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~i  420 (1018)
                      +.+.+.+++|+.|++|++++|.+++++.+.+.++++++++.++..++|+++.||.+++|++|+++++..+.. .+++..+
T Consensus       400 l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~  479 (888)
T d1qbkb_         400 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL  479 (888)
T ss_dssp             HHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88751220568999999986435555787742120355679998426998999999999999999986654156554555


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC--HHH
Q ss_conf             999998324998589998999999988630012444369899999996218998599999999999999962006--213
Q 001749          421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAF--IPY  498 (1018)
Q Consensus       421 l~~l~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~vr~~al~ai~~l~~~~~~~~--~~~  498 (1018)
                      ++.++..+.|++++|+..||+++..+++..+..+.||++.+++.+...+...+...+..++.++++++...+..+  .+|
T Consensus       480 l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~  559 (888)
T d1qbkb_         480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEY  559 (888)
T ss_dssp             HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             89999884289878999899999999987553113579999999999986003779999999999999862310133679


Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999811582124568899998999998430310278729999999852599982477999999999998720
Q 001749          499 AERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLE  578 (1018)
Q Consensus       499 ~~~i~~~l~~~l~~~~~~~~~~r~~~~~~l~~l~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~  578 (1018)
                      ++.+++.+...+....+.                                          + ..                
T Consensus       560 ~~~l~~~l~~~~~~~~~~------------------------------------------~-~~----------------  580 (888)
T d1qbkb_         560 IQMLMPPLIQKWNMLKDE------------------------------------------D-KD----------------  580 (888)
T ss_dssp             HHHHHHHHHHHHTTSCTT------------------------------------------C-TT----------------
T ss_pred             HHHHHHHHHHHHHHCCCC------------------------------------------H-HH----------------
T ss_conf             999999999999751210------------------------------------------6-88----------------


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             47356212246999962568988766889994010026899888840010014662266616300189999999999997
Q 001749          579 DGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALH  658 (1018)
Q Consensus       579 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~~~k~~a~~~L~~~~~~  658 (1018)
                                                                                        ...++++++.++..
T Consensus       581 ------------------------------------------------------------------~~~~le~l~~i~~~  594 (888)
T d1qbkb_         581 ------------------------------------------------------------------LFPLLECLSSVATA  594 (888)
T ss_dssp             ------------------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred             ------------------------------------------------------------------HHHHHHHHHHHHHH
T ss_conf             ------------------------------------------------------------------99999999999998


Q ss_pred             CCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             01057420899998740489926899999999999999971188099999999999999998198641798999999999
Q 001749          659 TKSSYAPFLEESLKILSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATL  738 (1018)
Q Consensus       659 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~e~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~  738 (1018)
                      .+..|.||.+.++..+                +..+...+                ..                   .+.
T Consensus       595 ~~~~~~~~~~~~~~~~----------------~~~l~~~l----------------~~-------------------~~~  623 (888)
T d1qbkb_         595 LQSGFLPYCEPVYQRC----------------VNLVQKTL----------------AQ-------------------AML  623 (888)
T ss_dssp             STTTTHHHHHHHHHHH----------------HHHHHHHH----------------HH-------------------HHH
T ss_pred             HHHHHHHHHHHHHHHH----------------HHHHHHHH----------------HH-------------------HHH
T ss_conf             6787765699999999----------------98899899----------------99-------------------998


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             9995133211888999877767750139999998747999999939982998999--79999985526999222144569
Q 001749          739 LLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAK--LFDPLMKFAKSSRPLQDRTMVVA  816 (1018)
Q Consensus       739 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~r~~a~~  816 (1018)
                      .....        ...       ...+...+..+.++++.+++.+|..+.+++..  +.+.+...+.+..+ .+|..+++
T Consensus       624 ~~~~~--------~~~-------~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~  687 (888)
T d1qbkb_         624 NNAQP--------DQY-------EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFA  687 (888)
T ss_dssp             HHHCT--------TTS-------CCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSH-HHHHHHHH
T ss_pred             HHCCC--------CCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHH
T ss_conf             74162--------011-------000688999999998889987305666666585699999999679976-89999999


Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             69999862194157509746999998418999677878999999987514822046899999865410079999912676
Q 001749          817 TLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRD  896 (1018)
Q Consensus       817 ~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~  896 (1018)
                      ++|++..+++..+.+|++.+++.+.+.+.+++.+++.+|+|++|.++.+.++.+.||++.+++.|.++++.++.++.+++
T Consensus       688 llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~  767 (888)
T d1qbkb_         688 LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLE  767 (888)
T ss_dssp             HHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             98877875168778779999999998738677899999999999999987798650599999999998769986378999


Q ss_pred             HHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             79999999987489999-9-441899997118999847731999999999982068245100459999999872599988
Q 001749          897 NAAGAVARMIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQILSLVPELVNLFAEVVVSPEES  974 (1018)
Q Consensus       897 na~~al~~l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  974 (1018)
                      |++.|+||+...+|+.+ | ++++++.|+.+|+..+|.+|+..+|+++|.++..+++.+.+.++.++.+++.+..   ..
T Consensus       768 n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~~i~~~~~---~~  844 (888)
T d1qbkb_         768 NTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN---PK  844 (888)
T ss_dssp             HHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHTTCSS---CC
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC---CC
T ss_conf             999999999987979888649999999999726379818999999999999997849888779999999970379---97


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             47899999999999987276-1999984289999999986268
Q 001749          975 SEVKSQVGMAFSHLISLYGQ-QMQPLLSNLSPAHATALAAFAP 1016 (1018)
Q Consensus       975 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~ 1016 (1018)
                      +++++.+..++..+++.+|+ .|+++++++|++.|.+|++.|+
T Consensus       845 ~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~~~~~l~~~y~  887 (888)
T d1qbkb_         845 DDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYG  887 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf             8999999999999998769275999997599999999998629
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure