Citrus Sinensis ID: 001750

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
cHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccEEEccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHcccccccHHcEEEEEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccHHHHHHHHcccccccccEEEEEcccccccccccHHHHHHccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccHHcccHHHHHcccccccEEEEEEcccHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHc
cccHHHHHHHcccccccEccccccccHHHHccccccccccccccccccccHHHHHHEccccEEEEEccccccEEEEEccccccccccccccccccccccccHHEEEEcccccccccccccccccccccccEEEEEEEccccEEEcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHccEccccccccccccccEEEEcccccEEEEEEEEEEEEEEEccHHHHccccEEEEEEcHHHHHcccHHHHHHHHHHccccEEEEEccccHHccHHHHHHHHHHccHHHcccHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccccEEEEEEEEccccccEEEccccEEEEEEcccccccHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHcHHHHHcccccccccccEEEEcHHHHHHHHHccccccccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccHHHcccccEEEEcccHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHcc
MSSLVERLRvrsdrkpiyqldesdddadfeqgkpgttveKFERIVRidakddscqacgesenlmscdtctyayhakclvpplkappsgswrcpecvsplndidkildcemrptvagdsdvsklgskQIFVKQYLVKWKGLSYLHCTWVPEKEFLKafksnprlrtkVNNFHrqmssnnnaeedfvairpewTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQsrshrsscnkqksspqdvtestkkpkefqqyehspeflsggslhpyqleglnflrfswskQTHVILADEMGLGKTIQSIAFLASLFgerisphlvvaplstlRNWEREFATWAPQMNVVMYVGTSQARNIIREYefyfpknpkkvkkkksgqvvseskqdriKFDVLLTSYEMinldsaslkpikwqcmivdeghrlknkdsKLFSSLKQYSTRHRVlltgtplqnNLDELFMLMHFldagkfgslEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDvmkelppkkeLILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCchpymlegvepdiedTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYeridgkvggaeRQIRIDrfnaknssrFCFLLSTragglginlatadtviiydsdwnphADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGskelfadendeggksrqihyddaaidrlldrdqvgdeeaslddedeDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENkssmsnserSSYWEELLKDRYEVHKVeefnalgkgkrsrkQMVSVEeddlagledvssegeddnyeadltdgdttssgtqpgrkpnkkrsrvdsmeppplmegegrsfrvlgfsQNQRAAFVQILMRFgvgdfdwkeftprlKQKSYEEIREYLTELCFICF
msslverlrvrsdrkpiyqldesdddadfeqgkpgttvekferiVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTvagdsdvsklgskQIFVKQYLVKWKGLSYLHCTWVPEKEFLKafksnprlRTKVNNFhrqmssnnnaeedfvairpEWTTVDRILacrgeddekeYLVKYKELSYDECYWEYESDISAFQPEIERFIKIqsrshrsscnkqksspqdvtestkkpKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYefyfpknpkkvkkkksgqvvseskqdrikfdVLLTSYEMInldsaslkpiKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKdvmkelppkkelilRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIdgkvggaerqiridrfnaknssrFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAhrlgqtnkvMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRlkaqninqeelDDIIRYGSKELFadendeggksrqihyddAAIDRLLDRDQVGDEeaslddededgFLKAFKVANFEYIEEVEAAAEEEAQKLAaenkssmsnserSSYWEELLKDRYEVHKVEefnalgkgkrsrkqmvsveeddlagledvssegeddnyeadltdgdttssgtqpgrkpnkkrsrvdsmeppplmegegRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPknpkkvkkkksgqvvseskQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYddaaidrlldrdQVGdeeaslddededGFLKAFKVANFeyieeveaaaeeeaqklaaeNKssmsnserssYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLtdgdttssgtQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
***************************************KFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKS***********************DFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI*****************************************GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFP*********************RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN****ISRLHRMLAPHLLRRVKKDVM******KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI**************GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELF******************************************GFLKAFKVANFEYIEEV***************************WEELLKDRYEVHKV*********************************************************************************FRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFIC*
******************************************************QACGESENLMSCDTCTYAYHAKCLVPP**APPS*SWRCPECVSPLNDIDKILDC********************FVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPR*****************AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK*********************************EHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK*****V*ESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQI*********SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHL*****************IIRYGSKEL***************YDDAAIDRLLDR********************AFKVANFEYIEEVEAAAE*************MSNSERSSYWEEL*************************************************************************************EGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQ********************************HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNP****************QDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQV**********DEDGFLKAFKVANFEYIEEVEAAAEEEAQK****************YWEELLKDRYEVHKVEEFNAL************VEEDDLAGLEDVSSEGEDDNYEADLTDG**********************MEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
***********SDRK********************************DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPT*************QIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR***********************KEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVK*KKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADEND*GGKSRQIHYDDAAIDRLLDRD******ASL****EDGFLKAFKVANFEYIEEV****************S**SNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEED**********************************************MEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNAEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYxxxxxxxxxxxxxxxxxxxxxSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYLTELCFICF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1018 2.2.26 [Sep-21-2011]
Q9S775 1384 CHD3-type chromatin-remod yes no 0.975 0.717 0.789 0.0
Q12873 2000 Chromodomain-helicase-DNA yes no 0.911 0.464 0.434 0.0
Q6PDQ2 1915 Chromodomain-helicase-DNA no no 0.921 0.489 0.440 0.0
Q14839 1912 Chromodomain-helicase-DNA no no 0.921 0.490 0.441 0.0
Q8TDI0 1954 Chromodomain-helicase-DNA no no 0.905 0.471 0.405 0.0
O97159 1982 Chromodomain-helicase-DNA yes no 0.910 0.467 0.406 0.0
Q22516 1787 Chromodomain-helicase-DNA yes no 0.906 0.516 0.419 0.0
G5EBZ4 1829 Protein let-418 OS=Caenor no no 0.899 0.500 0.414 0.0
O16102892 Chromodomain-helicase-DNA no no 0.786 0.897 0.435 0.0
O14647 1828 Chromodomain-helicase-DNA no no 0.657 0.365 0.421 1e-156
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1 Back     alignment and function desciption
 Score = 1610 bits (4168), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 797/1009 (78%), Positives = 892/1009 (88%), Gaps = 16/1009 (1%)

Query: 1    MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGES 60
            MSSLVERLR+RSDRKP+Y LD+SDDD      K   T E+ E IVR DAK+++CQACGES
Sbjct: 1    MSSLVERLRIRSDRKPVYNLDDSDDDDFVP--KKDRTFEQVEAIVRTDAKENACQACGES 58

Query: 61   ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDV 120
             NL+SC+TCTYA+HAKCLVPPLK     +WRCPECVSPLN+IDKILDCEMRPT + +   
Sbjct: 59   TNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKSSEQGS 118

Query: 121  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNA 180
            S    K IFVKQYLVKWKGLSYLHC+WVPEKEF KA+KSN RL+T+VNNFHRQM S NN+
Sbjct: 119  SDAEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNS 178

Query: 181  EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240
            E+DFVAIRPEWTTVDRILACR ED E EYLVKYKELSYDECYWE ESDIS FQ EI+RF 
Sbjct: 179  EDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFK 238

Query: 241  KIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFS 300
             + SR+ RS         +DV +  + P++FQQ++H+PEFL G  LHPYQLEGLNFLRFS
Sbjct: 239  DVNSRTRRS---------KDV-DHKRNPRDFQQFDHTPEFLKG-LLHPYQLEGLNFLRFS 287

Query: 301  WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMN 360
            WSKQTHVILADEMGLGKTIQSIA LASLF E + PHLV+APLSTLRNWEREFATWAPQMN
Sbjct: 288  WSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMN 347

Query: 361  VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420
            VVMY GT+QAR +IRE+EFY  K+ KK+KKKKSGQ+ SESKQ RIKFDVLLTSYEMINLD
Sbjct: 348  VVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLD 407

Query: 421  SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480
            SA LKPIKW+CMIVDEGHRLKNKDSKLFSSL QYS+ HR+LLTGTPLQNNLDELFMLMHF
Sbjct: 408  SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHF 467

Query: 481  LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540
            LDAGKFGSLEEFQEEFKDINQEEQISRLH+MLAPHLLRRVKKDVMK++PPKKELILRV+L
Sbjct: 468  LDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDL 527

Query: 541  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF 600
            SS QKEYYKAI TRNYQ+LT++GGAQISL N++MELRK+CCHPYMLEGVEP I D NE+F
Sbjct: 528  SSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAF 587

Query: 601  KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660
            KQLLES GKLQLLDKMMVKLKEQGHRVLIY+QFQHMLDLLEDY T KKWQYERIDGKVGG
Sbjct: 588  KQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGG 647

Query: 661  AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 720
            AERQIRIDRFNAKNS++FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
Sbjct: 648  AERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 707

Query: 721  LGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 780
            LGQTNKVMI+RLI RG+IEERMMQ+TKKKMVLEHLVVG+LK QNINQEELDDIIRYGSKE
Sbjct: 708  LGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767

Query: 781  LFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEE 840
            LFA E+DE GKS +IHYDDAAID+LLDRD V  EE S+DDE+E+GFLKAFKVANFEYI+E
Sbjct: 768  LFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDE 827

Query: 841  VEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 900
             EAAA  EAQ++AAE+KSS  NS+R+SYWEELLKD++E+H+ EE NALGK KRSRKQ+VS
Sbjct: 828  NEAAA-LEAQRVAAESKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVS 886

Query: 901  VEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE 960
            +EEDDLAGLEDVSS+G D++YEA+ TDG+    G Q GR+P +++ R D++EP PLMEGE
Sbjct: 887  IEEDDLAGLEDVSSDG-DESYEAESTDGEAAGQGVQTGRRPYRRKGR-DNLEPTPLMEGE 944

Query: 961  GRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009
            GRSFRVLGF+Q+QRA FVQ LMR+G G+FDWKEF PRLKQK++EEI EY
Sbjct: 945  GRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEY 993
Chromatin remodeling factor that represses the expression of embryonic trait genes (such as NFYB9/LEC1) upon and after seed germination and thus enables the developmental switch to post-germinative growth. Silences some MADS-box proteins such as PHE1 and PHE2. Plays a role during carpel differentiation.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3 Back     alignment and function description
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1 Back     alignment and function description
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2 Back     alignment and function description
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1 Back     alignment and function description
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2 Back     alignment and function description
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 Back     alignment and function description
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1 Back     alignment and function description
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3 Back     alignment and function description
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
255548778 1470 chromodomain helicase DNA binding protei 0.988 0.684 0.882 0.0
359475843 1472 PREDICTED: CHD3-type chromatin-remodelin 0.993 0.686 0.876 0.0
296082077 1356 unnamed protein product [Vitis vinifera] 0.993 0.745 0.876 0.0
449455537 1474 PREDICTED: CHD3-type chromatin-remodelin 0.991 0.684 0.843 0.0
449485189 1474 PREDICTED: LOW QUALITY PROTEIN: CHD3-typ 0.991 0.684 0.841 0.0
356507366 1441 PREDICTED: CHD3-type chromatin-remodelin 0.990 0.699 0.854 0.0
356515042 1440 PREDICTED: CHD3-type chromatin-remodelin 0.990 0.7 0.850 0.0
224092566 1340 chromatin remodeling complex subunit [Po 0.964 0.732 0.866 0.0
224143281 1334 chromatin remodeling complex subunit [Po 0.954 0.728 0.849 0.0
357466053 1483 Chromatin remodeling complex subunit [Me 0.986 0.677 0.784 0.0
>gi|255548778|ref|XP_002515445.1| chromodomain helicase DNA binding protein, putative [Ricinus communis] gi|223545389|gb|EEF46894.1| chromodomain helicase DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1832 bits (4746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1009 (88%), Positives = 956/1009 (94%), Gaps = 3/1009 (0%)

Query: 1    MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGES 60
            MSSLVERLRVRS+R+P+Y LDESDD+ DF  GKPG + EK ERIVR DAK D CQ+CGE+
Sbjct: 1    MSSLVERLRVRSERRPVYNLDESDDE-DFVSGKPGKSQEKIERIVRDDAKADCCQSCGEN 59

Query: 61   ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDV 120
             +L+SC+TCTY+YH KCL+PP+KA    +WRCPECVSPLNDIDKILDCEMRPTVAGD+DV
Sbjct: 60   GDLLSCETCTYSYHPKCLLPPIKATLPSNWRCPECVSPLNDIDKILDCEMRPTVAGDNDV 119

Query: 121  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNA 180
            SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM SNNNA
Sbjct: 120  SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMDSNNNA 179

Query: 181  EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240
            E+DFVAIRPEWTTVDRILACRG+DDEKEY VKYKEL YDECYWE+ESDISAFQPEIE+F 
Sbjct: 180  EDDFVAIRPEWTTVDRILACRGDDDEKEYFVKYKELPYDECYWEFESDISAFQPEIEKFN 239

Query: 241  KIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFS 300
            +IQS+S +   NK KSS +D T+S KK KEFQQYE SPEFL+GGSLHPYQLEGLNFLRFS
Sbjct: 240  RIQSKSRK--LNKHKSSLKDATDSKKKSKEFQQYEQSPEFLTGGSLHPYQLEGLNFLRFS 297

Query: 301  WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMN 360
            WSKQTHVILADEMGLGKTIQSIAFLASLF E +SPHLVVAPLSTLRNWEREFATWAPQ+N
Sbjct: 298  WSKQTHVILADEMGLGKTIQSIAFLASLFEESLSPHLVVAPLSTLRNWEREFATWAPQLN 357

Query: 361  VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420
            VVMYVG++QAR +IREYEFY+PK+ KK+KKKKSGQVV ESKQDRIKFDVLLTSYEMINLD
Sbjct: 358  VVMYVGSAQARTVIREYEFYYPKSHKKIKKKKSGQVVGESKQDRIKFDVLLTSYEMINLD 417

Query: 421  SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480
            + SLKPIKW+CMIVDEGHRLKNKDSKLF SLKQYS+ HRVLLTGTPLQNNLDELFMLMHF
Sbjct: 418  TTSLKPIKWECMIVDEGHRLKNKDSKLFLSLKQYSSNHRVLLTGTPLQNNLDELFMLMHF 477

Query: 481  LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540
            LDAGKF SLEEFQEEFKDINQEEQISRLH+MLAPHLLRRVKKDVM ELPPKKELILRVEL
Sbjct: 478  LDAGKFASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMTELPPKKELILRVEL 537

Query: 541  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF 600
            SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI+D+NESF
Sbjct: 538  SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIQDSNESF 597

Query: 601  KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660
            +QL+ESSGKLQLLDKMMV+LKEQGHRVLIYSQFQHMLDLLEDY T+KKWQYERIDGKVGG
Sbjct: 598  RQLVESSGKLQLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTYKKWQYERIDGKVGG 657

Query: 661  AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 720
            AERQ+RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
Sbjct: 658  AERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 717

Query: 721  LGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 780
            LGQTNKVMI+RLITRG+IEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE
Sbjct: 718  LGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 777

Query: 781  LFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEE 840
            LFADENDE GKSRQIHYDD AIDRLLDR+QVG+EEAS+DDE+EDGFLKAFKVANFEYI+E
Sbjct: 778  LFADENDEAGKSRQIHYDDTAIDRLLDREQVGEEEASVDDEEEDGFLKAFKVANFEYIDE 837

Query: 841  VEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 900
            V+AAAEE AQK AAE KS+++NSERS+YWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS
Sbjct: 838  VQAAAEEAAQKAAAEAKSTLNNSERSNYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 897

Query: 901  VEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE 960
            VEEDDLAGLEDVSS+GEDDNYEADLTD +T SSGTQ GRKP +KR+RVD+MEP PLMEGE
Sbjct: 898  VEEDDLAGLEDVSSDGEDDNYEADLTDSETASSGTQSGRKPYRKRARVDNMEPIPLMEGE 957

Query: 961  GRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009
            GRSFRVLGF+QNQRAAFVQILMRFGVG++DWKEF  R+KQKSYEEIR+Y
Sbjct: 958  GRSFRVLGFNQNQRAAFVQILMRFGVGEYDWKEFASRMKQKSYEEIRDY 1006

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359475843|ref|XP_002282918.2| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082077|emb|CBI21082.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455537|ref|XP_004145509.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485189|ref|XP_004157094.1| PREDICTED: LOW QUALITY PROTEIN: CHD3-type chromatin-remodeling factor PICKLE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507366|ref|XP_003522438.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] Back     alignment and taxonomy information
>gi|356515042|ref|XP_003526210.1| PREDICTED: CHD3-type chromatin-remodeling factor PICKLE-like [Glycine max] Back     alignment and taxonomy information
>gi|224092566|ref|XP_002309665.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222855641|gb|EEE93188.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224143281|ref|XP_002324903.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222866337|gb|EEF03468.1| chromatin remodeling complex subunit [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357466053|ref|XP_003603311.1| Chromatin remodeling complex subunit [Medicago truncatula] gi|355492359|gb|AES73562.1| Chromatin remodeling complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
TAIR|locus:2040184 1384 PKL "PICKLE" [Arabidopsis thal 0.975 0.717 0.736 0.0
TAIR|locus:2116747 1202 PKR2 "PICKLE RELATED 2" [Arabi 0.580 0.491 0.599 9e-284
UNIPROTKB|F1N3F6 1934 CHD4 "Uncharacterized protein" 0.796 0.419 0.452 1.2e-194
UNIPROTKB|F1LPP7 2020 Chd3 "Protein Chd3" [Rattus no 0.784 0.395 0.451 4.8e-194
UNIPROTKB|F1M7Q0 2054 Chd3 "Protein Chd3" [Rattus no 0.784 0.388 0.451 4.8e-194
RGD|1311923 1925 Chd3 "chromodomain helicase DN 0.784 0.415 0.451 4.8e-194
UNIPROTKB|F1ST12 2002 CHD3 "Uncharacterized protein" 0.782 0.398 0.451 1.3e-193
UNIPROTKB|E9PG89 2059 CHD3 "Chromodomain-helicase-DN 0.782 0.387 0.452 4.3e-193
UNIPROTKB|Q12873 2000 CHD3 "Chromodomain-helicase-DN 0.782 0.398 0.452 4.3e-193
UNIPROTKB|E2RTI2 1998 CHD3 "Uncharacterized protein" 0.782 0.398 0.451 7e-193
TAIR|locus:2040184 PKL "PICKLE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3833 (1354.3 bits), Expect = 0., P = 0.
 Identities = 743/1009 (73%), Positives = 825/1009 (81%)

Query:     1 MSSLVERLRVRSDRKPIYQLDESDDDADFEQGKPGTTVEKFERIVRIDAKDDSCQACGES 60
             MSSLVERLR+RSDRKP+Y LD+SDDD DF   K   T E+ E IVR DAK+++CQACGES
Sbjct:     1 MSSLVERLRIRSDRKPVYNLDDSDDD-DFVP-KKDRTFEQVEAIVRTDAKENACQACGES 58

Query:    61 ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDV 120
              NL+SC+TCTYA+HAKCLVPPLK     +WRCPECVSPLN+IDKILDCEMRPT + +   
Sbjct:    59 TNLVSCNTCTYAFHAKCLVPPLKDASVENWRCPECVSPLNEIDKILDCEMRPTKSSEQGS 118

Query:   121 SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSNNNA 180
             S    K IFVKQYLVKWKGLSYLHC+WVPEKEF KA+KSN RL+T+VNNFHRQM S NN+
Sbjct:   119 SDAEPKPIFVKQYLVKWKGLSYLHCSWVPEKEFQKAYKSNHRLKTRVNNFHRQMESFNNS 178

Query:   181 EEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240
             E+DFVAIRPEWTTVDRILACR ED E EYLVKYKELSYDECYWE ESDIS FQ EI+RF 
Sbjct:   179 EDDFVAIRPEWTTVDRILACREEDGELEYLVKYKELSYDECYWESESDISTFQNEIQRFK 238

Query:   241 KIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFS 300
              + SR+ RS         +DV +  + P++FQQ++H+PEFL G  LHPYQLEGLNFLRFS
Sbjct:   239 DVNSRTRRS---------KDV-DHKRNPRDFQQFDHTPEFLKG-LLHPYQLEGLNFLRFS 287

Query:   301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMN 360
             WSKQTHVILADEMGLGKTIQSIA LASLF E + PHLV+APLSTLRNWEREFATWAPQMN
Sbjct:   288 WSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLVIAPLSTLRNWEREFATWAPQMN 347

Query:   361 VVMYVGTSQARNIIREYEFYFPXXXXXXXXXXXXXXXXXXXQDRIKFDVLLTSYEMINLD 420
             VVMY GT+QAR +IRE+EFY                     Q RIKFDVLLTSYEMINLD
Sbjct:   348 VVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLD 407

Query:   421 SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHF 480
             SA LKPIKW+CMIVDEGHRLKNKDSKLFSSL QYS+ HR+LLTGTPLQNNLDELFMLMHF
Sbjct:   408 SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHF 467

Query:   481 LDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540
             LDAGKFGSLEEFQEEFKDINQEEQISRLH+MLAPHLLRRVKKDVMK++PPKKELILRV+L
Sbjct:   468 LDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDL 527

Query:   541 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESF 600
             SS QKEYYKAI TRNYQ+LT++GGAQISL N++MELRK+CCHPYMLEGVEP I D NE+F
Sbjct:   528 SSLQKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAF 587

Query:   601 KQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660
             KQLLES GKLQLLDKMMVKLKEQGHRVLIY+QFQHMLDLLEDY T KKWQYERIDGKVGG
Sbjct:   588 KQLLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGG 647

Query:   661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 720
             AERQIRIDRFNAKNS++FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR
Sbjct:   648 AERQIRIDRFNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR 707

Query:   721 LGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKE 780
             LGQTNKVMI+RLI RG+IEERMMQ+TKKKMVLEHLVVG+LK QNINQEELDDIIRYGSKE
Sbjct:   708 LGQTNKVMIYRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKE 767

Query:   781 LFADENDEGGKSRQIHYXXXXXXXXXXXXQVGXXXXXXXXXXXXGFLKAFKVANFXXXXX 840
             LFA E+DE GKS +IHY             V             GFLKAFKVANF     
Sbjct:   768 LFASEDDEAGKSGKIHYDDAAIDKLLDRDLVEAEEVSVDDEEENGFLKAFKVANFEYIDE 827

Query:   841 XXXXXXXXXXXXXXXNKXXXXXXXXXXYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVS 900
                            +K          YWEELLKD++E+H+ EE NALGK KRSRKQ+VS
Sbjct:   828 NEAAALEAQRVAAE-SKSSAGNSDRASYWEELLKDKFELHQAEELNALGKRKRSRKQLVS 886

Query:   901 VEEDDLAGLEDVSSEGEDDNYEADLXXXXXXXXXXQPGRKPNKKRSRVDSMEPPPLMEGE 960
             +EEDDLAGLEDVSS+G D++YEA+           Q GR+P +++ R D++EP PLMEGE
Sbjct:   887 IEEDDLAGLEDVSSDG-DESYEAESTDGEAAGQGVQTGRRPYRRKGR-DNLEPTPLMEGE 944

Query:   961 GRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREY 1009
             GRSFRVLGF+Q+QRA FVQ LMR+G G+FDWKEF PRLKQK++EEI EY
Sbjct:   945 GRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEY 993
GO:0003674 "molecular_function" evidence=ND
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0003678 "DNA helicase activity" evidence=ISS
GO:0016568 "chromatin modification" evidence=ISS
GO:0016887 "ATPase activity" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP
GO:0009736 "cytokinin mediated signaling pathway" evidence=IMP
GO:0009733 "response to auxin stimulus" evidence=IMP
GO:2000023 "regulation of lateral root development" evidence=IMP
GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP
GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA
GO:0016246 "RNA interference" evidence=RCA
GO:0008283 "cell proliferation" evidence=IMP
GO:0009739 "response to gibberellin stimulus" evidence=IMP
GO:0048364 "root development" evidence=IMP
TAIR|locus:2116747 PKR2 "PICKLE RELATED 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1N3F6 CHD4 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LPP7 Chd3 "Protein Chd3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M7Q0 Chd3 "Protein Chd3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1311923 Chd3 "chromodomain helicase DNA binding protein 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1ST12 CHD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E9PG89 CHD3 "Chromodomain-helicase-DNA-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q12873 CHD3 "Chromodomain-helicase-DNA-binding protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTI2 CHD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S775PKL_ARATH3, ., 6, ., 4, ., -0.78980.97540.7174yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.120.824
3rd Layer3.6.40.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-158
COG0553866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 1e-104
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-97
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-27
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-25
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 4e-21
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 4e-21
smart0049082 smart00490, HELICc, helicase superfamily c-termina 9e-21
pfam06461158 pfam06461, DUF1086, Domain of Unknown Function (DU 5e-20
pfam0646566 pfam06465, DUF1087, Domain of Unknown Function (DU 6e-19
smart0024947 smart00249, PHD, PHD zinc finger 2e-11
pfam0062851 pfam00628, PHD, PHD-finger 5e-11
smart0029855 smart00298, CHROMO, Chromatin organization modifie 2e-09
pfam11496279 pfam11496, HDA2-3, Class II histone deacetylase co 2e-09
pfam0038552 pfam00385, Chromo, Chromo (CHRromatin Organisation 4e-09
cd0002455 cd00024, CHROMO, Chromatin organization modifier ( 7e-08
pfam0038552 pfam00385, Chromo, Chromo (CHRromatin Organisation 3e-07
cd0002455 cd00024, CHROMO, Chromatin organization modifier ( 3e-07
smart0029855 smart00298, CHROMO, Chromatin organization modifie 9e-07
cd11726127 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-tha 8e-04
PRK04914956 PRK04914, PRK04914, ATP-dependent helicase HepA; V 0.002
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information 
 Score =  493 bits (1272), Expect = e-158
 Identities = 245/551 (44%), Positives = 341/551 (61%), Gaps = 45/551 (8%)

Query: 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAP 341
           G +  YQL GLN+L   +    + ILADEMGLGKT+Q+I+ L  L   R    PH+VVAP
Sbjct: 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAP 227

Query: 342 LSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESK 401
            STL NW  E   + P +  V + G  + R   RE E                       
Sbjct: 228 KSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQRE-ELLVAG------------------ 268

Query: 402 QDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVL 461
               KFDV +TS+EM   +  +LK   W+ +I+DE HR+KN++S L  +++ +ST +R+L
Sbjct: 269 ----KFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLL 324

Query: 462 LTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK---DINQEEQISRLHRMLAPHLLR 518
           +TGTPLQNNL EL+ L++FL    F S E F E F+   + +Q+E + +LH++L P LLR
Sbjct: 325 ITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLR 384

Query: 519 RVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRK 578
           R+K DV K LPPKKE IL+V +S  QK+YYKA+L ++  ++   GG +  L+N+ M+LRK
Sbjct: 385 RLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA-GGERKRLLNIAMQLRK 443

Query: 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD 638
            C HPY+ +G EP    T  + + L+E+SGK+ LLDK++ KLKE+  RVLI+SQ   +LD
Sbjct: 444 CCNHPYLFQGAEPGPPYT--TGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLD 501

Query: 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADT 698
           +LEDYL ++ +QY RIDG  GG +R   ID FN   S +F FLLSTRAGGLGINLATAD 
Sbjct: 502 ILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADI 561

Query: 699 VIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVV- 757
           VI+YDSDWNP  DLQA  RAHR+GQ  +V +FR  T  +IEE++++   KK+ L+ LV+ 
Sbjct: 562 VILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQ 621

Query: 758 -GRLKAQ-NINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEE 815
            GRL  Q  +N++EL  ++RYG++ +F        K   I   D  IDR++ +   G+E 
Sbjct: 622 QGRLAEQKTVNKDELLQMVRYGAEMVF------SSKDSTI--TDEDIDRIIAK---GEEA 670

Query: 816 ASLDDEDEDGF 826
            +  D     F
Sbjct: 671 TAELDAKMKKF 681

Length = 1033
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|219039 pfam06461, DUF1086, Domain of Unknown Function (DUF1086) Back     alignment and domain information
>gnl|CDD|148208 pfam06465, DUF1087, Domain of Unknown Function (DUF1087) Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain Back     alignment and domain information
>gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 Back     alignment and domain information
>gnl|CDD|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain Back     alignment and domain information
>gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus Back     alignment and domain information
>gnl|CDD|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain Back     alignment and domain information
>gnl|CDD|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus Back     alignment and domain information
>gnl|CDD|214605 smart00298, CHROMO, Chromatin organization modifier domain Back     alignment and domain information
>gnl|CDD|213034 cd11726, ADDz_ATRX, ADDz domain of ATRX (alpha-thalassemia/mental retardation, X-linked) Back     alignment and domain information
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1018
KOG0384 1373 consensus Chromodomain-helicase DNA-binding protei 100.0
KOG0385 971 consensus Chromatin remodeling complex WSTF-ISWI, 100.0
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 100.0
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 100.0
KOG0383696 consensus Predicted helicase [General function pre 100.0
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 100.0
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 100.0
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 100.0
KOG0387923 consensus Transcription-coupled repair protein CSB 100.0
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 100.0
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 100.0
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 100.0
KOG1002791 consensus Nucleotide excision repair protein RAD16 100.0
KOG4439901 consensus RNA polymerase II transcription terminat 100.0
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 100.0
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 100.0
KOG1016 1387 consensus Predicted DNA helicase, DEAD-box superfa 100.0
PRK04914956 ATP-dependent helicase HepA; Validated 100.0
KOG1001674 consensus Helicase-like transcription factor HLTF/ 100.0
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK13766773 Hef nuclease; Provisional 100.0
KOG0298 1394 consensus DEAD box-containing helicase-like transc 99.98
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.97
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.97
PHA02558501 uvsW UvsW helicase; Provisional 99.96
PTZ00110545 helicase; Provisional 99.93
KOG0354746 consensus DEAD-box like helicase [General function 99.92
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 99.92
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 99.92
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 99.92
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 99.92
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 99.92
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 99.91
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 99.91
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 99.9
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 99.9
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.89
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.89
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 99.89
KOG1123776 consensus RNA polymerase II transcription initiati 99.89
PTZ00424401 helicase 45; Provisional 99.89
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 99.88
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 99.88
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.87
PRK13767 876 ATP-dependent helicase; Provisional 99.87
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.87
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.87
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.87
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.87
PF06461145 DUF1086: Domain of Unknown Function (DUF1086); Int 99.85
PRK106891147 transcription-repair coupling factor; Provisional 99.85
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 99.84
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.81
PRK02362737 ski2-like helicase; Provisional 99.81
PRK00254720 ski2-like helicase; Provisional 99.8
COG1201 814 Lhr Lhr-like helicases [General function predictio 99.79
PRK01172674 ski2-like helicase; Provisional 99.79
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.78
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.78
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.77
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.77
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.77
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.75
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.74
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.74
PHA02653675 RNA helicase NPH-II; Provisional 99.74
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.73
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.71
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.71
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.71
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.7
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.69
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.69
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.68
PRK09401 1176 reverse gyrase; Reviewed 99.68
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.67
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.67
COG1205 851 Distinct helicase family with a unique C-terminal 99.67
PRK05580679 primosome assembly protein PriA; Validated 99.67
COG4096875 HsdR Type I site-specific restriction-modification 99.66
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.65
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.65
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.65
COG4889 1518 Predicted helicase [General function prediction on 99.64
KOG4284 980 consensus DEAD box protein [Transcription] 99.64
COG1204766 Superfamily II helicase [General function predicti 99.63
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.63
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.63
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.63
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.62
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.62
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.61
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.6
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.59
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 99.59
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.57
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.57
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.56
PRK14701 1638 reverse gyrase; Provisional 99.56
PRK09694878 helicase Cas3; Provisional 99.56
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.56
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.56
KOG0347731 consensus RNA helicase [RNA processing and modific 99.54
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.54
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 99.53
COG1202830 Superfamily II helicase, archaea-specific [General 99.52
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.5
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.48
KOG0346569 consensus RNA helicase [RNA processing and modific 99.48
KOG0334997 consensus RNA helicase [RNA processing and modific 99.47
smart00487201 DEXDc DEAD-like helicases superfamily. 99.46
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.44
KOG0952 1230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.43
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.42
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.41
PRK05298652 excinuclease ABC subunit B; Provisional 99.4
PF11496297 HDA2-3: Class II histone deacetylase complex subun 99.39
KOG0327397 consensus Translation initiation factor 4F, helica 99.37
smart0049082 HELICc helicase superfamily c-terminal domain. 99.37
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.36
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.35
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.34
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.34
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.33
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.33
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.28
PF0646566 DUF1087: Domain of Unknown Function (DUF1087); Int 99.25
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.23
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.22
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.22
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.16
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.12
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.12
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.12
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.1
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.07
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 98.98
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.9
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 98.86
COG1198730 PriA Primosomal protein N' (replication factor Y) 98.82
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.81
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 98.81
KOG0947 1248 consensus Cytoplasmic exosomal RNA helicase SKI2, 98.81
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 98.77
KOG1244336 consensus Predicted transcription factor Requiem/N 98.76
PF0038555 Chromo: Chromo (CHRromatin Organisation MOdifier) 98.74
COG0610962 Type I site-specific restriction-modification syst 98.74
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 98.73
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 98.64
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 98.63
KOG1513 1300 consensus Nuclear helicase MOP-3/SNO (DEAD-box sup 98.62
KOG4299613 consensus PHD Zn-finger protein [General function 98.6
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 98.59
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.58
KOG0949 1330 consensus Predicted helicase, DEAD-box superfamily 98.54
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 98.53
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.46
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 98.43
PRK15483 986 type III restriction-modification system StyLTI en 98.42
KOG0948 1041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 98.35
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 98.35
cd0002455 CHROMO Chromatin organization modifier (chromo) do 98.33
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 98.24
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 98.23
KOG08251134 consensus PHD Zn-finger protein [General function 98.18
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 98.17
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 98.16
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.15
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 98.11
smart0029855 CHROMO Chromatin organization modifier domain. 98.09
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.07
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.07
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 98.02
PF13871278 Helicase_C_4: Helicase_C-like 98.02
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 98.01
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 97.96
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.94
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.9
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 97.88
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 97.8
PF0038555 Chromo: Chromo (CHRromatin Organisation MOdifier) 97.77
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 97.73
KOG0957707 consensus PHD finger protein [General function pre 97.66
cd0002455 CHROMO Chromatin organization modifier (chromo) do 97.65
KOG1512381 consensus PHD Zn-finger protein [General function 97.57
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 97.57
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 97.51
KOG1973274 consensus Chromatin remodeling protein, contains P 97.49
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 97.41
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 97.35
KOG0926 1172 consensus DEAH-box RNA helicase [RNA processing an 97.25
COG3587 985 Restriction endonuclease [Defense mechanisms] 97.07
KOG4150 1034 consensus Predicted ATP-dependent RNA helicase [RN 97.06
KOG2748369 consensus Uncharacterized conserved protein, conta 97.05
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 97.05
smart0029855 CHROMO Chromatin organization modifier domain. 97.02
KOG09551051 consensus PHD finger protein BR140/LIN-49 [General 97.01
KOG4443694 consensus Putative transcription factor HALR/MLL3, 96.94
PRK10536262 hypothetical protein; Provisional 96.9
COG5141669 PHD zinc finger-containing protein [General functi 96.89
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 96.79
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 96.77
KOG0954893 consensus PHD finger protein [General function pre 96.64
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.5
KOG1911270 consensus Heterochromatin-associated protein HP1 a 96.41
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.35
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 96.34
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 96.31
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.29
KOG1131755 consensus RNA polymerase II transcription initiati 96.26
PRK14873665 primosome assembly protein PriA; Provisional 96.17
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 96.14
TIGR00376637 DNA helicase, putative. The gene product may repre 95.96
KOG2748369 consensus Uncharacterized conserved protein, conta 95.95
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 95.79
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 95.42
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 95.17
KOG1803649 consensus DNA helicase [Replication, recombination 95.11
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 95.06
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 95.02
KOG0956900 consensus PHD finger protein AF10 [General functio 95.0
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 94.99
PLN03025319 replication factor C subunit; Provisional 94.83
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 94.74
PRK09112351 DNA polymerase III subunit delta'; Validated 94.62
PRK04296190 thymidine kinase; Provisional 94.5
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 94.34
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 94.32
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 94.32
PRK12402337 replication factor C small subunit 2; Reviewed 93.65
PRK10875615 recD exonuclease V subunit alpha; Provisional 93.34
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 93.32
COG3421812 Uncharacterized protein conserved in bacteria [Fun 93.31
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 93.28
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 93.14
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 93.08
KOG1133821 consensus Helicase of the DEAD superfamily [Replic 93.08
PRK06526254 transposase; Provisional 93.06
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 93.0
KOG0383696 consensus Predicted helicase [General function pre 92.71
smart00382148 AAA ATPases associated with a variety of cellular 92.46
PRK05707328 DNA polymerase III subunit delta'; Validated 92.29
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 92.24
smart00492141 HELICc3 helicase superfamily c-terminal domain. 92.24
PRK07940394 DNA polymerase III subunit delta'; Validated 92.22
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 92.19
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 91.94
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 91.76
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 91.54
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 91.34
smart00491142 HELICc2 helicase superfamily c-terminal domain. 91.27
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 91.26
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 91.17
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 91.13
PRK08181269 transposase; Validated 91.05
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 90.96
PRK00440319 rfc replication factor C small subunit; Reviewed 90.95
KOG4299613 consensus PHD Zn-finger protein [General function 90.84
PRK14949 944 DNA polymerase III subunits gamma and tau; Provisi 90.82
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 90.71
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 90.55
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 90.35
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 90.33
PRK08084235 DNA replication initiation factor; Provisional 90.07
CHL00181287 cbbX CbbX; Provisional 89.96
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 89.95
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 89.95
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 89.72
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 89.68
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 89.68
PRK08058329 DNA polymerase III subunit delta'; Validated 89.67
PRK06871325 DNA polymerase III subunit delta'; Validated 89.35
PRK07471365 DNA polymerase III subunit delta'; Validated 89.3
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 89.23
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 89.19
PRK08769319 DNA polymerase III subunit delta'; Validated 88.98
PHA02533534 17 large terminase protein; Provisional 88.73
PF05876557 Terminase_GpA: Phage terminase large subunit (GpA) 88.72
KOG4443694 consensus Putative transcription factor HALR/MLL3, 88.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 88.54
PHA02544316 44 clamp loader, small subunit; Provisional 88.5
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 88.17
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 87.46
PRK14974336 cell division protein FtsY; Provisional 87.36
COG1200677 RecG RecG-like helicase [DNA replication, recombin 87.35
PRK08116268 hypothetical protein; Validated 87.26
KOG18051100 consensus DNA replication helicase [Replication, r 87.21
PF13173128 AAA_14: AAA domain 87.14
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 87.12
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 87.1
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 87.08
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 86.93
KOG0957707 consensus PHD finger protein [General function pre 86.92
PRK06090319 DNA polymerase III subunit delta'; Validated 86.69
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 86.69
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 86.63
PRK08727233 hypothetical protein; Validated 86.57
PF1324576 AAA_19: Part of AAA domain 86.31
PRK06964342 DNA polymerase III subunit delta'; Validated 86.26
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 86.25
PRK00149450 dnaA chromosomal replication initiation protein; R 86.24
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 86.13
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 86.09
PRK07993334 DNA polymerase III subunit delta'; Validated 86.07
COG0593408 DnaA ATPase involved in DNA replication initiation 85.93
PHA03368738 DNA packaging terminase subunit 1; Provisional 85.83
TIGR00362405 DnaA chromosomal replication initiator protein Dna 85.35
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 85.31
PHA03372668 DNA packaging terminase subunit 1; Provisional 85.25
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 84.54
TIGR00595505 priA primosomal protein N'. All proteins in this f 84.44
PHA03333752 putative ATPase subunit of terminase; Provisional 84.4
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 84.28
PRK14087450 dnaA chromosomal replication initiation protein; P 83.85
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 83.76
PRK08903227 DnaA regulatory inactivator Hda; Validated 83.65
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 83.61
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 83.56
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 83.54
COG2256436 MGS1 ATPase related to the helicase subunit of the 83.19
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 83.11
PRK13889988 conjugal transfer relaxase TraA; Provisional 83.03
PRK04132846 replication factor C small subunit; Provisional 83.02
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 82.87
PF06733174 DEAD_2: DEAD_2; InterPro: IPR010614 This represent 82.75
TIGR00643630 recG ATP-dependent DNA helicase RecG. 82.49
PRK05580679 primosome assembly protein PriA; Validated 82.44
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 82.44
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 82.27
PRK06893229 DNA replication initiation factor; Validated 82.11
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 81.94
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 81.57
PRK00771437 signal recognition particle protein Srp54; Provisi 81.46
PRK11054684 helD DNA helicase IV; Provisional 81.36
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 81.3
PRK00411394 cdc6 cell division control protein 6; Reviewed 81.1
PRK14088440 dnaA chromosomal replication initiation protein; P 80.82
COG1484254 DnaC DNA replication protein [DNA replication, rec 80.67
COG1198730 PriA Primosomal protein N' (replication factor Y) 80.39
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 80.34
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-171  Score=1508.56  Aligned_cols=830  Identities=44%  Similarity=0.745  Sum_probs=700.0

Q ss_pred             ccccccccccccCcCCC--C----------CcccccccchhhhhhhhhhcCCccccccccchHhHHHHhhcChhHHHHHH
Q 001750          101 DIDKILDCEMRPTVAGD--S----------DVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN  168 (1018)
Q Consensus       101 ~iekIL~wR~~p~~~~~--~----------~~~~~~~~~~~~~eylVKw~~~Sy~h~~W~~e~~l~~~~~~~~~~~~kl~  168 (1018)
                      .++.++.||.++...+.  .          +......+...+.||||||+|+||+||+|+|++.|...   ..++.+|+.
T Consensus       184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~  260 (1373)
T KOG0384|consen  184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD  260 (1373)
T ss_pred             hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence            78899999864443221  0          00000111245689999999999999999999998643   234456999


Q ss_pred             hhhhhhccCCC--CchhhhcCCCCcchhhhhhhhccCCCcceeeeeeccccccccccccCCCcCc-cHHHHHHHHHHhhc
Q 001750          169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR  245 (1018)
Q Consensus       169 ~f~kk~~~~~~--~~~~~~~~~~~~~~verIi~~~~~~~~~~ylVKW~~L~Y~~~tWE~~~~~~~-~~~~i~~~~~~~~~  245 (1018)
                      ||.++......  -.++...++++|.+|||||++....+ .+|||||+||||++||||...+|.. .+.++++|..+...
T Consensus       261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s  339 (1373)
T KOG0384|consen  261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS  339 (1373)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence            99988543321  12334568999999999999986655 9999999999999999999998864 57778888765321


Q ss_pred             ccccccCccCCCCcccccccCCCccccccccCCCCCCCCCChhHHHHHHHHHHHhhcCCCceEEEcCCCccHHHHHHHHH
Q 001750          246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL  325 (1018)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~L~~yQ~egv~wl~~~~~~~~~~ILaDemGlGKTiqai~~l  325 (1018)
                      .         ..|.......+.++.|.+++.||.|+.|++||+||++|||||.++|+++.+||||||||||||+|+|+||
T Consensus       340 k---------~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl  410 (1373)
T KOG0384|consen  340 K---------TLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL  410 (1373)
T ss_pred             c---------cCCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence            1         1122223445667889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC--CCceEEEeCCccHHHHHHHHHHHcCCCeEEEEecChHHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 001750          326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD  403 (1018)
Q Consensus       326 ~~l~~~~--~~p~LIV~P~s~l~~W~~E~~~~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  403 (1018)
                      .+|++..  .||||||||+|++.+|++||.+|+ ++++++|+|+..+|++|++|||++....                 .
T Consensus       411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~  472 (1373)
T KOG0384|consen  411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K  472 (1373)
T ss_pred             HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence            9998754  689999999999999999999999 9999999999999999999999977641                 3


Q ss_pred             cccccEEEccHHHHhhccccccCCcceEEEEcccccccCcccHHHHHHHhcccccEEEEecCCCCCCHHHHHHHHHhhcC
Q 001750          404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA  483 (1018)
Q Consensus       404 ~~~~~VvitTye~l~~d~~~l~~i~w~~lIvDEaHrlKn~~s~~~~~l~~l~~~~rllLTgTPlqN~~~EL~~Ll~fL~p  483 (1018)
                      ..+|+++||||+++.+|..+|..|+|.+++|||||||||..++++..|..+...||||+||||+|||+.|||+|+|||+|
T Consensus       473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P  552 (1373)
T KOG0384|consen  473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP  552 (1373)
T ss_pred             ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHhchhhHHHHHHHHHHhhhHHHHHHHhhHhhcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcC
Q 001750          484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG  563 (1018)
Q Consensus       484 ~~~~~~~~F~~~~~~~~~~~~~~~L~~~L~p~~lRR~k~dv~~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~~  563 (1018)
                      +.|.++++|...| +..++..+..||..|+|+||||+|+||.+.||++.|+|++|+||++|+++|++||++|+.+|.++.
T Consensus       553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~  631 (1373)
T KOG0384|consen  553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA  631 (1373)
T ss_pred             CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence            9999999999999 788899999999999999999999999999999999999999999999999999999999999864


Q ss_pred             -CcchhHHHHHHHHHHhhCcccccCCCCCCccc------cHHHHHHHHhhhhHHHHHHHHHHHHHHhCCeEEEEechhhH
Q 001750          564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIED------TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM  636 (1018)
Q Consensus       564 -~~~~~l~~~l~~Lrk~c~hP~l~~~~~~~~~~------~~~~~~~li~~S~Kl~~L~klL~~l~~~g~kvLIFsq~~~~  636 (1018)
                       ++..+++|++|+||||||||||+.+++..+..      .++.++.||.+||||.+|++||.+|++.||||||||||++|
T Consensus       632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm  711 (1373)
T KOG0384|consen  632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM  711 (1373)
T ss_pred             CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence             44589999999999999999999998865433      34689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEeCCCChHHHHHHHHHhccCCCCceEEEeecccccccccCCCCCEEEEEcCCCCcchHHHHHH
Q 001750          637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA  716 (1018)
Q Consensus       637 ldiL~~~L~~~g~~~~rldG~~~~~~Rq~~i~~Fn~~~s~~~v~Llstragg~GINL~~ad~VIi~D~dwNp~~~~Qa~g  716 (1018)
                      ||||++||..+||+|+||||++.++.|+++||+||+++|+.|||||||||||+||||++|||||||||||||++|+||++
T Consensus       712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA  791 (1373)
T KOG0384|consen  712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA  791 (1373)
T ss_pred             HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhccccc-------cCCCHHHHHHHHhhchhhhhcccccCC
Q 001750          717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA-------QNINQEELDDIIRYGSKELFADENDEG  789 (1018)
Q Consensus       717 R~hRiGQ~k~V~Iyrlvt~~TvEe~i~~~~~~K~~l~~~v~~~~~~-------~~~~~~el~~il~~g~~~lf~~~~~~~  789 (1018)
                      |||||||++.|+||||||++||||.|+++|++||.|+++|++.|.+       +.++++||.+||||||+++|+++++++
T Consensus       792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~  871 (1373)
T KOG0384|consen  792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE  871 (1373)
T ss_pred             HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence            9999999999999999999999999999999999999999988853       579999999999999999999987665


Q ss_pred             CCcccCCCCHHHHHHHhcCCCCCCcccCCCCcchhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhccCCCCCCCchHH
Q 001750          790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW  869 (1018)
Q Consensus       790 ~~~~~~~~~~~~id~ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  869 (1018)
                      .     .+.++|||+||.|++..++..++ -..++++|++|+||+|...++++-               ++.   ++-.|
T Consensus       872 s-----~~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~---------------~~~---~didw  927 (1373)
T KOG0384|consen  872 S-----KFCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADL---------------EAE---RDIDW  927 (1373)
T ss_pred             c-----cccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhh---------------hhh---ccCCh
Confidence            4     35679999999999886665442 356789999999999987554221               011   12579


Q ss_pred             HHHHHhHHH-----HHHHHHHHhcCCCCCCcc--cccccchhhhcccccCCCCCCCccccccCCCCCCCCCCCCCCCCCC
Q 001750          870 EELLKDRYE-----VHKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN  942 (1018)
Q Consensus       870 ~~~~~~~~~-----~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1018)
                      +.|+++...     +.+..+.+.+...+|.|.  +..+.+.+.  +       .+.+.++.  +          .++ -.
T Consensus       928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-------~~~~~~e~--~----------~~~-~~  985 (1373)
T KOG0384|consen  928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-------AESRSVEK--S----------LGK-KG  985 (1373)
T ss_pred             hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-------cccccccc--c----------ccc-cc
Confidence            999997542     233334455655555553  333321111  0       00000000  0          011 11


Q ss_pred             ccccCCCCCCCCCccccCCCcceecCCChHHHHHHHHHHHHhCCCCCchhhhc--ccccCCCHHHHHHHHHHHhhhcC
Q 001750          943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYLTELCFICF 1018 (1018)
Q Consensus       943 ~~~~~~~~~~~~pl~~~~~~~~~v~Gf~~~~r~~f~~~~~~~g~~~~~~~~~~--~~l~~ks~~e~~~y~~~~~~~~~ 1018 (1018)
                      ++|.|.+..          ....+.||+.++.|+|+++|++||++.+....++  ++|..+|+++++..+.++|+.|-
T Consensus       986 ~~r~r~~~~----------~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~ 1053 (1373)
T KOG0384|consen  986 KGRWREILK----------RGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACK 1053 (1373)
T ss_pred             ccccccccc----------cchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhh
Confidence            223331111          2456889999999999999999999987655565  68999999999999999999993

>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>smart00298 CHROMO Chromatin organization modifier domain Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>smart00298 CHROMO Chromatin organization modifier domain Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics] Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08058 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK06871 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PRK06090 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PRK06964 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07993 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK04132 replication factor C small subunit; Provisional Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
3mwy_W800 Crystal Structure Of The Chromodomain-atpase Portio 1e-145
1z3i_X644 Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA 4e-60
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 6e-60
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 3e-57
1z5z_A271 Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal 4e-19
2yql_A56 Solution Structure Of The Phd Domain In Phd Finger 1e-09
1mm2_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 3e-09
2kft_A56 Nmr Solution Structure Of The First Phd Finger Doma 4e-09
1xwh_A66 Nmr Structure Of The First Phd Finger Of Autoimmune 5e-09
1mm3_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 2e-08
2kwj_A114 Solution Structures Of The Double Phd Fingers Of Hu 4e-08
2e6r_A92 Solution Structure Of The Phd Domain In Smcy Protei 8e-08
2l5u_A61 Structure Of The First Phd Finger (Phd1) From Chd4 2e-07
2puy_A60 Crystal Structure Of The Bhc80 Phd Finger Length = 2e-07
2ysm_A111 Solution Structure Of The First And Second Phd Doma 1e-06
1f62_A51 Wstf-Phd Length = 51 3e-06
2e6s_A77 Solution Structure Of The Phd Domain In Ring Finger 2e-05
3zvz_B57 Phd Finger Of Human Uhrf1 Length = 57 3e-05
3t6r_A72 Structure Of Uhrf1 In Complex With Unmodified H3 N- 3e-05
3shb_A77 Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 3e-05
3sou_A70 Structure Of Uhrf1 Phd Finger In Complex With Histo 3e-05
2b2t_A187 Tandem Chromodomains Of Human Chd1 Complexed With H 2e-04
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 3e-04
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 4e-04
4gy5_A241 Crystal Structure Of The Tandem Tudor Domain And Pl 4e-04
2b2u_A187 Tandem Chromodomains Of Human Chd1 Complexed With H 4e-04
4gnd_A107 Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains 8e-04
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score =  514 bits (1323), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 291/705 (41%), Positives = 412/705 (58%), Gaps = 81/705 (11%)
Query: 132 QYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLR--TKVNNFHRQMSSNNNAEEDFVAIRP 189
           ++L+KW   S+LH TW       + ++S  ++R   +++N+ +Q       E+  V + P
Sbjct: 73  EFLIKWTDESHLHNTW-------ETYESIGQVRGLKRLDNYCKQFI----IEDQQVRLDP 121
Query: 190 EWTTVD----------------------RILACRGEDDEK-----EYLVKYKELSYDECY 222
             T  D                      RI+  +    E      +YLVK++ L+YDE  
Sbjct: 122 YVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEAT 181
Query: 223 WEYESDISAFQPEIERFIKIQSRSHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLS 282
           WE  +DI    PE           H  +    K  PQ  +  T +   F++    P F+ 
Sbjct: 182 WENATDIVKLAPE--------QVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIK 233
Query: 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVA 340
           GG L  +QL G+N++ F WSK  + ILADEMGLGKT+Q++AF++ L   R    PH++V 
Sbjct: 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVV 293
Query: 341 PLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPXXXXXXXXXXXXXXXXXX 400
           PLST+  W   F  WAP +N + Y+G  ++R+ IREYEFY                    
Sbjct: 294 PLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFY--------------TNPRAK 339
Query: 401 XQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRV 460
            +  +KF+VLLT+YE I  D A L  IKWQ M VDE HRLKN +S L+ SL  +   +R+
Sbjct: 340 GKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRM 399
Query: 461 LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRV 520
           L+TGTPLQNN+ EL  L++FL  G+F   +E   E +D  QEE I  LHR + P +LRR+
Sbjct: 400 LITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL 459
Query: 521 KKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG-GAQISLINVVMELRKL 579
           KKDV K LP K E ILRVELS  Q EYYK ILT+NY  LT    G   SL+N++ EL+K 
Sbjct: 460 KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKA 519
Query: 580 CCHPYMLEGVEP-------DIEDTNES-FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYS 631
             HPY+ +  E        D + T E+  + L+ SSGK+ LLD+++ +LK+ GHRVLI+S
Sbjct: 520 SNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFS 579
Query: 632 QFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691
           Q   MLD+L DYL+ K   ++R+DG V  A+R+I ID FN+ +S+ F FLLSTRAGGLGI
Sbjct: 580 QMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGI 639
Query: 692 NLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751
           NL TADTV+I+DSDWNP ADLQAMARAHR+GQ N VM++RL+++ ++EE +++  +KKM+
Sbjct: 640 NLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699
Query: 752 LEHLVVG--------RLKAQNINQEELDDIIRYGSKELFADENDE 788
           LE+ ++           K    N  EL  I+++G+  +F   +++
Sbjct: 700 LEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQ 744
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 Back     alignment and structure
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 Back     alignment and structure
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 Back     alignment and structure
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 Back     alignment and structure
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 Back     alignment and structure
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 Back     alignment and structure
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 Back     alignment and structure
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 Back     alignment and structure
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 Back     alignment and structure
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 Back     alignment and structure
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 Back     alignment and structure
>pdb|1F62|A Chain A, Wstf-Phd Length = 51 Back     alignment and structure
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77 Back     alignment and structure
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 Back     alignment and structure
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 Back     alignment and structure
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 Back     alignment and structure
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 Back     alignment and structure
>pdb|2B2T|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone H3 Tail Containing Trimethyllysine 4 And Phosphothreonine 3 Length = 187 Back     alignment and structure
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 Back     alignment and structure
>pdb|2B2U|A Chain A, Tandem Chromodomains Of Human Chd1 Complexed With Histone H3 Tail Containing Trimethyllysine 4 And Dimethylarginine 2 Length = 187 Back     alignment and structure
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains Length = 107 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 0.0
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 0.0
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 1e-138
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 7e-82
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 2e-76
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 1e-73
2h1e_A177 Chromo domain protein 1; CHD1, tandem chromodomain 2e-21
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 6e-21
2b2y_A187 CHD-1, chromodomain-helicase-DNA-binding protein 1 1e-20
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 5e-20
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 7e-20
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 3e-19
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 5e-19
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 5e-19
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 3e-18
2ee1_A64 Chromodomain helicase-DNA-binding protein 4; EC 3. 1e-16
2ee1_A64 Chromodomain helicase-DNA-binding protein 4; EC 3. 6e-04
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 6e-16
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 2e-15
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 5e-15
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 6e-06
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 1e-14
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 1e-14
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 1e-14
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 1e-14
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 4e-12
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 3e-14
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 3e-14
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 5e-14
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 7e-08
2epb_A68 Chromodomain-helicase-DNA-binding protein 6; struc 5e-14
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 6e-14
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 2e-12
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 6e-12
2yt5_A66 Metal-response element-binding transcription facto 7e-11
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-10
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 3e-09
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-09
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 8e-09
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 1e-08
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-08
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-08
1we9_A64 PHD finger family protein; structural genomics, PH 2e-07
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 5e-07
2b2y_C115 CHD-1, chromodomain-helicase-DNA-binding protein 1 8e-07
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 2e-06
3mts_A64 Histone-lysine N-methyltransferase SUV39H1; histon 7e-06
3mts_A64 Histone-lysine N-methyltransferase SUV39H1; histon 5e-04
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 8e-06
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 2e-05
1pdq_A72 Polycomb protein; methyllysine, chromodomain, poly 2e-04
2dnv_A64 Chromobox protein homolog 8; chromo domain, histon 2e-04
2dnv_A64 Chromobox protein homolog 8; chromo domain, histon 3e-04
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 3e-04
1pfb_A55 Polycomb protein; chromatin, histone methylation, 3e-04
1pfb_A55 Polycomb protein; chromatin, histone methylation, 6e-04
3i91_A54 Chromobox protein homolog 8; chromobox homolog 8, 3e-04
3f2u_A55 Chromobox protein homolog 1; human chromobox homol 4e-04
3f2u_A55 Chromobox protein homolog 1; human chromobox homol 9e-04
2d9u_A74 Chromobox protein homolog 2 (isoform 2); chromobox 5e-04
3h91_A54 Chromobox protein homolog 2; human chromobox homol 6e-04
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 6e-04
3lwe_A62 M-phase phosphoprotein 8; MPP8, structural genomic 9e-04
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
 Score =  940 bits (2432), Expect = 0.0
 Identities = 297/783 (37%), Positives = 434/783 (55%), Gaps = 74/783 (9%)

Query: 98  PLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF---VKQYLVKWKGLSYLHCTWVPEKEFL 154
             + ID +++  ++ ++     + K            ++L+KW   S+LH TW    E +
Sbjct: 36  DFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETY-ESI 94

Query: 155 KAFKSNPRLRTKVNNFHRQMSSNNNAE--------------EDFVAIRPEWTTVDRILAC 200
              +   RL      F  +                      E  +    E+   +RI+  
Sbjct: 95  GQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDS 154

Query: 201 R-----GEDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIKIQSRSHRSSCNKQ 254
           +         + +YLVK++ L+YDE  WE  +DI      +++ F   ++          
Sbjct: 155 QRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENS--------- 205

Query: 255 KSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMG 314
           K  PQ  +  T +   F++    P F+ GG L  +QL G+N++ F WSK  + ILADEMG
Sbjct: 206 KILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMG 265

Query: 315 LGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARN 372
           LGKT+Q++AF++ L   R    PH++V PLST+  W   F  WAP +N + Y+G  ++R+
Sbjct: 266 LGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRD 325

Query: 373 IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCM 432
            IREYEFY     K  K               +KF+VLLT+YE I  D A L  IKWQ M
Sbjct: 326 TIREYEFYTNPRAKGKK--------------TMKFNVLLTTYEYILKDRAELGSIKWQFM 371

Query: 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEF 492
            VDE HRLKN +S L+ SL  +   +R+L+TGTPLQNN+ EL  L++FL  G+F   +E 
Sbjct: 372 AVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEI 431

Query: 493 QEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAIL 552
             E +D  QEE I  LHR + P +LRR+KKDV K LP K E ILRVELS  Q EYYK IL
Sbjct: 432 DFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNIL 491

Query: 553 TRNYQILTRRG-GAQISLINVVMELRKLCCHPYMLEGVEPDI--------EDTNESFKQL 603
           T+NY  LT    G   SL+N++ EL+K   HPY+ +  E  +               + L
Sbjct: 492 TKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGL 551

Query: 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663
           + SSGK+ LLD+++ +LK+ GHRVLI+SQ   MLD+L DYL+ K   ++R+DG V  A+R
Sbjct: 552 IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611

Query: 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ 723
           +I ID FN+ +S+ F FLLSTRAGGLGINL TADTV+I+DSDWNP ADLQAMARAHR+GQ
Sbjct: 612 RISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQ 671

Query: 724 TNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR--------LKAQNINQEELDDIIR 775
            N VM++RL+++ ++EE +++  +KKM+LE+ ++           K    N  EL  I++
Sbjct: 672 KNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILK 731

Query: 776 YGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDG--FLKAFKVA 833
           +G+  +F   +++         +D  +D +L+  +       L +    G  FLK F+V 
Sbjct: 732 FGAGNMFTATDNQ------KKLEDLNLDDVLNHAEDHVTTPDLGESHLGGEEFLKQFEVT 785

Query: 834 NFE 836
           +++
Sbjct: 786 DYK 788
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A Length = 177 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A* Length = 187 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Length = 159 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C Length = 115 Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386 Back     alignment and structure
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} Length = 64 Back     alignment and structure
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens} Length = 64 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 72 Back     alignment and structure
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 Length = 64 Back     alignment and structure
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2 Length = 64 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 55 Back     alignment and structure
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2 Length = 55 Back     alignment and structure
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} PDB: 3gv6_A* 3i90_A* Length = 54 Back     alignment and structure
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* Length = 55 Back     alignment and structure
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A* Length = 55 Back     alignment and structure
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74 Back     alignment and structure
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A Length = 54 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A* Length = 62 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1018
d1z3ix1346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-49
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 5e-39
d1z3ix2298 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis 2e-35
d1z5za1244 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h 1e-29
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 8e-25
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 9e-21
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 7e-16
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 7e-15
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 6e-14
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 6e-12
d2dy7a181 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 6e-12
d2dy7a181 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 5e-05
d2dy8a169 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 2e-10
d2dy8a169 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 7e-08
d2b2ya180 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 1e-09
d2b2ya180 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 1e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 3e-09
d2b2ya295 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 ( 5e-09
d2b2ya295 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 ( 0.004
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 6e-09
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 1e-08
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-08
d1g6za_70 b.34.13.2 (A:) Histone methyltransferase clr4, chr 3e-08
d1g6za_70 b.34.13.2 (A:) Histone methyltransferase clr4, chr 5e-05
d2dnta166 b.34.13.2 (A:8-73) Chromodomain protein, Y-like is 4e-08
d2dnta166 b.34.13.2 (A:8-73) Chromodomain protein, Y-like is 2e-04
d1q3la_52 b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fru 5e-08
d1q3la_52 b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fru 8e-05
d2dnva152 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mo 1e-06
d2dnva152 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mo 2e-04
d1guwa_73 b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mou 2e-06
d1guwa_73 b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mou 5e-04
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 2e-06
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 2e-05
d2huga155 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidops 8e-05
d1pfba_55 b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Dr 8e-05
d1pfba_55 b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Dr 2e-04
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 1e-04
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 2e-04
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 7e-04
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 0.001
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score =  177 bits (449), Expect = 1e-49
 Identities = 89/322 (27%), Positives = 154/322 (47%), Gaps = 22/322 (6%)

Query: 522 KDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILT-RRGGAQISLINVVMELRKL 579
            D++ K LP K E ++   L+  QKE YK  L +   + + + G   +S ++ +  L+KL
Sbjct: 2   SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 61

Query: 580 CCHPYML-----------EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRV 627
           C HP ++           +G          +     + SGK+ +LD ++   +     +V
Sbjct: 62  CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKV 121

Query: 628 LIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687
           ++ S +   LDL E     +++ Y R+DG +   +R   ++RFN  +S  F F+LS++AG
Sbjct: 122 VLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAG 181

Query: 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747
           G G+NL  A+ ++++D DWNP  D QAMAR  R GQ     I+RL++ G+IEE+++Q   
Sbjct: 182 GCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 241

Query: 748 KKMVLEHLVVGRLKA--QNINQEELDDIIRYGSK------ELFADENDEGGKSRQIHYDD 799
            K  L   VV   +   ++ +  EL ++     K      + F       G+  +   DD
Sbjct: 242 HKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPDD 301

Query: 800 AAIDRLLDRDQVGDEEASLDDE 821
           +     L       ++  L D 
Sbjct: 302 SDCTCDLSNWHHCADKRGLRDP 323
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 Back     information, alignment and structure
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81 Back     information, alignment and structure
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69 Back     information, alignment and structure
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 69 Back     information, alignment and structure
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 95 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 70 Back     information, alignment and structure
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 70 Back     information, alignment and structure
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52 Back     information, alignment and structure
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 52 Back     information, alignment and structure
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 73 Back     information, alignment and structure
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Length = 73 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 55 Back     information, alignment and structure
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 55 Back     information, alignment and structure
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 55 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1018
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 100.0
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 100.0
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.91
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.86
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.86
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.84
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.8
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.79
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.77
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.76
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.75
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.73
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.71
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.68
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.65
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.59
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.56
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.55
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.53
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.42
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.35
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.33
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.32
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.32
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.25
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.21
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.17
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.09
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.08
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.07
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.04
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.03
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.03
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 98.99
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 98.96
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 98.95
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 98.93
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.9
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 98.88
d2b2ya295 ATP-dependent helicase CHD1 (Chromo domain protein 98.88
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 98.85
d2b2ya180 ATP-dependent helicase CHD1 (Chromo domain protein 98.84
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.83
d2dy8a169 ATP-dependent helicase CHD1 (Chromo domain protein 98.79
d2dy7a181 ATP-dependent helicase CHD1 (Chromo domain protein 98.59
d1g6za_70 Histone methyltransferase clr4, chromo domain {Fis 98.4
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 98.38
d2dnta166 Chromodomain protein, Y-like isoform {Human (Homo 98.34
d1guwa_73 Heterochromatin protein 1, HP1 {Mouse (Mus musculu 98.33
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.32
d1q3la_52 Heterochromatin protein 1, HP1 {Fruit fly (Drosoph 98.29
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.25
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.19
d2dnva152 Chromobox protein homolog 8 {Mouse (Mus musculus) 98.02
d1pfba_55 Polycomb protein, Pc {Fruit fly (Drosophila melano 97.99
d2dy8a169 ATP-dependent helicase CHD1 (Chromo domain protein 97.96
d2b2ya180 ATP-dependent helicase CHD1 (Chromo domain protein 97.82
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.71
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.65
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.64
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.59
d2dy7a181 ATP-dependent helicase CHD1 (Chromo domain protein 97.54
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.54
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.5
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 97.45
d1x3pa154 CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId 97.33
d1g6za_70 Histone methyltransferase clr4, chromo domain {Fis 97.28
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.21
d2dnta166 Chromodomain protein, Y-like isoform {Human (Homo 97.14
d1guwa_73 Heterochromatin protein 1, HP1 {Mouse (Mus musculu 97.13
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 96.94
d1pfba_55 Polycomb protein, Pc {Fruit fly (Drosophila melano 96.89
d1q3la_52 Heterochromatin protein 1, HP1 {Fruit fly (Drosoph 96.88
d2dnva152 Chromobox protein homolog 8 {Mouse (Mus musculus) 96.74
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 96.7
d2b2ya295 ATP-dependent helicase CHD1 (Chromo domain protein 96.64
d1wema_76 Death associated transcription factor 1, Datf1 (DI 96.58
d1x3pa154 CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId 96.54
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.16
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 95.86
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.79
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.69
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 94.7
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 94.52
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 94.4
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 94.07
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 93.06
d2huga155 CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId 92.95
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 92.6
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 91.34
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 89.98
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 89.37
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 86.65
d1okkd2207 GTPase domain of the signal recognition particle r 86.46
d2huga155 CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId 86.45
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 86.01
d2qy9a2211 GTPase domain of the signal recognition particle r 84.95
d1vmaa2213 GTPase domain of the signal recognition particle r 82.84
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 82.68
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=100.00  E-value=0  Score=367.46  Aligned_cols=257  Identities=31%  Similarity=0.552  Sum_probs=216.4

Q ss_pred             HHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCCCCCC--------CC
Q ss_conf             5673-1299958999983389999999999999999999932-896015999999999960865424799--------99
Q 001750          522 KDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGV--------EP  591 (1018)
Q Consensus       522 ~dv~-~~lP~k~e~iv~v~ls~~Q~~~Y~~il~~~~~~l~~~-~~~~~~l~~il~~Lrk~~~hP~l~~~~--------e~  591 (1018)
                      .+|+ +.||||.+++++|+||+.|+++|+.++.+........ +....+.++.++.||++||||+|+...        +.
T Consensus         2 ~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~   81 (346)
T d1z3ix1           2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDG   81 (346)
T ss_dssp             GGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTT
T ss_pred             HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf             21333408898799999697999999999999989999865448716899999999999957998861111022112320


Q ss_pred             C---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf             9---42507999998742049999999999999-8078099992304379999998741898189995878938999999
Q 001750          592 D---IEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI  667 (1018)
Q Consensus       592 ~---~~~~~~~~~~li~~S~Kl~~L~klL~~l~-~~g~kvLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~i  667 (1018)
                      .   ..............|+|+.+|..+|..+. ..|+||||||+|+.++++|+.+|...|+++.+++|+++..+|+.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i  161 (346)
T d1z3ix1          82 ALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV  161 (346)
T ss_dssp             GGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             03312334100001400178999999999998875189516886301456799999763002411011100278899999


Q ss_pred             HHHCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf             99606899833899505665335457779989997699991358999997886099981899998408999999999999
Q 001750          668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK  747 (1018)
Q Consensus       668 d~Fn~~~s~~~v~LlsT~agg~GINL~~ad~VIi~D~~wNp~~~~Qa~gR~~RiGQ~k~V~Vyrlit~~TvEe~i~~~~~  747 (1018)
                      ++||++....++||++++|||+||||+.|++||+||++|||..+.||+||+||+||+++|.||||+++||+||+|++++.
T Consensus       162 ~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~  241 (346)
T d1z3ix1         162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA  241 (346)
T ss_dssp             HHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred             HHHHCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf             86510234330254033144433565643079994578861558676333403489984389998738989999999999


Q ss_pred             HHHHHHHHHHCCCC--CCCCCHHHHHHHHHHCH
Q ss_conf             97889999741101--14899999999996222
Q 001750          748 KKMVLEHLVVGRLK--AQNINQEELDDIIRYGS  778 (1018)
Q Consensus       748 ~K~~l~~~v~~~~~--~~~~~~~~l~~ll~~g~  778 (1018)
                      .|+.+...|++...  ...++.+++.++|.+..
T Consensus       242 ~K~~l~~~v~~~~~~~~~~~~~~~l~~lf~~~~  274 (346)
T d1z3ix1         242 HKKALSSCVVDEEQDVERHFSLGELRELFSLNE  274 (346)
T ss_dssp             HHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCS
T ss_pred             HHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCC
T ss_conf             999999987588655540289999999964787
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure