Citrus Sinensis ID: 001758

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MGPSSPTSSCSSSYSSPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRDN
cccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccEEEEcHHHHHHHHHcccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHccccccccccEEEcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHcccccccEEEEccccccHHHHHccccccccccEEEEEEcccccccccccEEEEEEcccccccccccccccccccEEcccHHHHHHccccccccccccEEEEccHHHHHHcccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccHHHccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEEEcccccHHHHccccccccccEEEEccccccccccccccccHHHccccccHHHHHccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccEEEHHHHHHHHcccEEEccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHcc
cccccccHHHHccccccccHHHHccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHcccccEccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccEEEEEcccHHHHHHHHcccccHHHccEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHcccccccEEEEEEEEccccccEccEEEEEEccccHHcccccccccHHHHccccccccHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHHcccEEEEEEHccccHHHHHHcccccccccEEEEEEEEEEEEEEcccEEEEEccccEEEEcccccccccEEEEEEccHHHHHHcccccccccccEEEEEEcHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHcccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEcccccccHEEEEHHHHHHHHHHHccccccccccccccccccccHHcccEEEEEEccccccHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHcccccccEEEEEEccccEEEHHHHHcccccEEEEccccccccccccccHHHHHHHcccccccEEEcccccccccHHHEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccEEcccEEEEEEcccccccccccHHHHHHHHHHcc
mgpssptsscsssysspftspefsslpvmSLREKIVEKVLENRVTLIVgetgcgkssqvpqfllaenmepilctqpRRFAVVAVAKMVAKGrncelggevgyhighskhlseRSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRdlgrgervevlaipstnqrTIFQRRVSYLEQVTELlgvdhgmtselsslrycsgpspsmanaeikPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWhlmkplssffKVHILHSSVDTEQALMAMKICKSHRKVILAtniaessvtiPKVAYVIDSCRSLQVFWDvnrkidsaeLVWVSQSQaeqrrgrtgrtcdgqvYRLVTKSFfgtledhecpAILRLSLRLQVLLICCAeskaisdpkvllqkaldppypevvgdALDLLDHKRALqkisprgryeptfYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGilmdtqplpilhpfgddalfaeytgcyfggdgntrlltGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHrfrpkflgtsnglptyydpyefehtcllncdpprdmdplaadnehlgpsfeakkcvavpfvapnqfqsnNVAEKLASIIKEIRVQYVEdvsgnqdkavngsetpgeaplCVYFingscnrgtgcpfshslqakrpackffyslqgcrngdscifshdlgqpvlpsssftclpedgvANAASLLRLfptssdgsilllddtdmhFSANlaclydpsriisttclsdsaicdtSLAGIRILWGLCHSLKTVIseagdnpipwkevkcvlwypslesySENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFfflsesfpfdemsfgelsdtvntkrpmLVSRAISYvfdlhpptdfqfgdYAAVLHRCLRDN
mgpssptsscsssysspftspefsslpVMSLREKIVEKVLENRVTLIvgetgcgksSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIghskhlsersKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQlllkkndlrvvlmsataditkyrdYFRDLGRGERVevlaipstnqrtifqRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILAtniaessvtipKVAYVIDSCRSLQVFWDVNRKIDsaelvwvsqsqaeqrrgrtgrtcdgqvYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAEskaisdpkvLLQKALDPPYPEVVGDALDLLDHKRAlqkisprgryepTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDkavngsetpgeAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVIseagdnpipwkEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRDN
MGpssptsscsssysspftspefsslpVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFavvavakmvakGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDlvlvcvkqlllkkNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAIlrlslrlqvllICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRllasfslsfdasvlvlKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRDN
*****************************SLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYC************KPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVS***********GRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDP****************SFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDV****************APLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCL***
*************************LPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKF*G**NGLPTYYDPYEFEHTCLLNCDPPRDM******************CVAVPFVAPNQFQSNNVAEKLASIIKEIRVQY**************SETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIF**********************ANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLES******S**TLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRC****
***********************SSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWV**************TCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRDN
****************PFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAE*R**RTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCI**********************VANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRD*
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MGPSSPTSSCSSSYSSPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFWQHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRDN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1017 2.2.26 [Sep-21-2011]
O222431015 Zinc finger CCCH domain-c yes no 0.966 0.968 0.655 0.0
Q1EHT71007 Zinc finger CCCH domain-c yes no 0.961 0.971 0.566 0.0
Q6PGC11365 ATP-dependent RNA helicas yes no 0.493 0.367 0.333 1e-59
Q7Z4781369 ATP-dependent RNA helicas yes no 0.495 0.368 0.322 6e-58
Q3MHU3 1384 Putative ATP-dependent RN no no 0.566 0.416 0.283 4e-56
Q14BI7 1383 Putative ATP-dependent RN no no 0.585 0.430 0.285 5e-56
Q16JS8 1374 Probable ATP-dependent RN N/A no 0.470 0.347 0.300 7e-55
Q8NDG6 1382 Putative ATP-dependent RN no no 0.573 0.421 0.294 9e-55
Q296Q5 1433 Probable ATP-dependent RN yes no 0.484 0.344 0.303 6e-54
B0XDC4 1396 Probable ATP-dependent RN N/A no 0.512 0.373 0.292 1e-52
>sp|O22243|C3H31_ARATH Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2 Back     alignment and function desciption
 Score = 1302 bits (3370), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 657/1003 (65%), Positives = 803/1003 (80%), Gaps = 20/1003 (1%)

Query: 23   FSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFAVV 82
            F+SLP+M+++ +I++K+LENRVTLIVGE GCGKSSQVPQFLL  NM PILCTQPRRFAVV
Sbjct: 23   FASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVV 82

Query: 83   AVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVII 142
            AVAKMVAK RN +LGGE+GYHIGHSK L+E SKI+FKTAGVLLDEM D+GLNALKYKVII
Sbjct: 83   AVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVII 142

Query: 143  LDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAI 202
            LDEVHERSVESDLVLVCVKQ L+K NDLRVVLMSATADIT+YRDYF++LGRGERVEV+AI
Sbjct: 143  LDEVHERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAI 202

Query: 203  PSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIH 262
            PS +QRTIFQRRV YLEQV  LLGV    +S+LS+  YC GPSPS A+ EIKPE+  LIH
Sbjct: 203  PSPDQRTIFQRRVLYLEQVAGLLGV----SSDLSA--YCPGPSPSSADTEIKPELQNLIH 256

Query: 263  DLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMK 322
            DL+L+IH+ E DIEKSILVFLPTYY+LEQQ+H ++P  + F+VHILH S+DTEQAL AMK
Sbjct: 257  DLILYIHEKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMK 316

Query: 323  ICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQR 382
            IC+S RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWD +RK D+ +LVWVS+SQAEQR
Sbjct: 317  ICRSRRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQR 376

Query: 383  RGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQ 442
            RGRTGRTCDG+VYRLV  +FF  LE+HE P+IL+LSLR QVL ICC ES+AI+D   LL 
Sbjct: 377  RGRTGRTCDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLA 436

Query: 443  KALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGE 502
            KA+DPP P+VV DAL +L   +AL+K SPRGRYEPTFYGRLLASF LSFDAS+LV+KFGE
Sbjct: 437  KAMDPPDPDVVDDALRMLLSIQALRK-SPRGRYEPTFYGRLLASFPLSFDASILVVKFGE 495

Query: 503  IGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNL 562
            +GMLR+GILLG+LMDT PLPI HPFGDD+LF EY   YFG  G+  +  GR+EMV+M N 
Sbjct: 496  MGMLRQGILLGVLMDTLPLPIHHPFGDDSLFLEYVDHYFG--GSKTISGGRREMVLMANF 553

Query: 563  CAFQFWQHVFK---RLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELY 619
            CAFQFWQ VFK   RL++L+Q+L  ++ K    + P+IE+EWC  H + QSS +HVSELY
Sbjct: 554  CAFQFWQRVFKDKHRLENLKQLLSKEKDKDLKLMFPEIEKEWCDFHNIAQSSFYHVSELY 613

Query: 620  EDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEA 679
            ED L++ HRFRP+F+ +S+  PTYY+PYEF+HTC + C P  D    + D ++  P  E 
Sbjct: 614  EDTLSSFHRFRPQFISSSDSQPTYYNPYEFDHTCYIECQPSEDKYLHSEDVDNNQPPPEV 673

Query: 680  KKCVAVPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSE--TPGEAPLC 737
            +KCV+VPFV PN FQ+N +AE +ASIIKEIR Q     S N   A+   +    GEAP+C
Sbjct: 674  RKCVSVPFVPPNAFQANAIAENMASIIKEIRTQCTPSESDNGHGALEPEDYVEYGEAPVC 733

Query: 738  VYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPV---LPSSS 794
            VYF+NG CNRG  C F+H+LQ+ RPACKFF S QGCRNG+SC+FSH + +     LP   
Sbjct: 734  VYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQ 793

Query: 795  FTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSA 854
              CLPE+  ++ + LL LFPTSS+G IL+ DD+DMHF++++A  Y   RI+ST+  S++ 
Sbjct: 794  --CLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETL 851

Query: 855  ICDTSLAGIRILWGLCHSLKTVISEAG-DNPIPWKEVKCVLWYPSLESYSENLESQKTLM 913
             CD+SLA  RI WGL H  +T+IS+AG +NPIPW EVKCVLW+ + +SY++  E QKT++
Sbjct: 852  FCDSSLADTRIFWGLNHPYQTIISKAGRENPIPWNEVKCVLWFLNPDSYADTPEKQKTIL 911

Query: 914  QNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGEL 973
            QNFFEH+AIR+L D LY  RV++TMNN++F+ LQVEKLAR+SFFFL ESFP D  SFG  
Sbjct: 912  QNFFEHMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESFPHDSESFGAF 971

Query: 974  SDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRD 1016
             DT+  ++PMLVSR ISYVF+LHPP+D QFG+Y ++L + L +
Sbjct: 972  QDTLTIQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLHN 1014

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -
>sp|Q1EHT7|C3H4_ORYSJ Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1 Back     alignment and function description
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2 Back     alignment and function description
>sp|Q3MHU3|TDRD9_RAT Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus GN=Tdrd9 PE=2 SV=3 Back     alignment and function description
>sp|Q14BI7|TDRD9_MOUSE Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9 PE=1 SV=3 Back     alignment and function description
>sp|Q16JS8|SPNE_AEDAE Probable ATP-dependent RNA helicase spindle-E OS=Aedes aegypti GN=spn-E PE=3 SV=1 Back     alignment and function description
>sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3 Back     alignment and function description
>sp|Q296Q5|SPNE_DROPS Probable ATP-dependent RNA helicase spindle-E OS=Drosophila pseudoobscura pseudoobscura GN=spn-E PE=3 SV=2 Back     alignment and function description
>sp|B0XDC4|SPNE_CULQU Probable ATP-dependent RNA helicase spindle-E OS=Culex quinquefasciatus GN=spn-E PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1017
2555641681025 ATP-dependent RNA helicase, putative [Ri 0.975 0.967 0.711 0.0
2977438761007 unnamed protein product [Vitis vinifera] 0.962 0.972 0.712 0.0
3594799041014 PREDICTED: zinc finger CCCH domain-conta 0.962 0.965 0.705 0.0
3574425071035 Zinc finger CCCH domain-containing prote 0.968 0.951 0.665 0.0
2978284891015 zinc finger helicase family protein [Ara 0.965 0.967 0.653 0.0
152271121015 zinc finger CCCH domain-containing prote 0.966 0.968 0.655 0.0
449469086998 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.944 0.962 0.640 0.0
1222250401007 RecName: Full=Zinc finger CCCH domain-co 0.961 0.971 0.566 0.0
3571278701004 PREDICTED: zinc finger CCCH domain-conta 0.956 0.969 0.562 0.0
4139470161007 putative RNA helicase family protein [Ze 0.957 0.967 0.538 0.0
>gi|255564168|ref|XP_002523081.1| ATP-dependent RNA helicase, putative [Ricinus communis] gi|223537643|gb|EEF39266.1| ATP-dependent RNA helicase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1466 bits (3795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 721/1013 (71%), Positives = 835/1013 (82%), Gaps = 21/1013 (2%)

Query: 17   PFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQP 76
            PF   EF+SLP+MSLR+KIVEKVLENRVTLIVG+TGCGKSSQVPQFLL ENMEPILCTQP
Sbjct: 18   PFLQREFASLPIMSLRQKIVEKVLENRVTLIVGDTGCGKSSQVPQFLLEENMEPILCTQP 77

Query: 77   RRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNAL 136
            RRFAVVAVAKMVAK RNCELGGEVGYHIGH KHLSERSKIVFKTAGVL DEMR++GLNAL
Sbjct: 78   RRFAVVAVAKMVAKARNCELGGEVGYHIGHLKHLSERSKIVFKTAGVLSDEMREKGLNAL 137

Query: 137  KYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGER 196
            KYKVIILDEVHERS+ESDLVLVCVKQ LL+ NDLRVVLMSATAD  +YRDYF+DLGRGER
Sbjct: 138  KYKVIILDEVHERSIESDLVLVCVKQFLLRNNDLRVVLMSATADFGRYRDYFKDLGRGER 197

Query: 197  VEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPE 256
            VEVLAIPS+NQ+ +FQRRVSYLEQ            S++ + +YCSGPSP+M +A+IKPE
Sbjct: 198  VEVLAIPSSNQQALFQRRVSYLEQEI--------TCSQVLATKYCSGPSPAMVSADIKPE 249

Query: 257  VHKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQ 316
            VHKLIHDLV+HIH NE DIEK ILVFLPTY+ L QQW+L+KPL S FKVHILH S+DTEQ
Sbjct: 250  VHKLIHDLVMHIHDNEPDIEKGILVFLPTYHDLLQQWYLLKPLGSCFKVHILHGSIDTEQ 309

Query: 317  ALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQ 376
            AL+AMKI KSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWD  RK D AELVWVS+
Sbjct: 310  ALLAMKIWKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDGTRKKDYAELVWVSK 369

Query: 377  SQAEQRRGRTGRTCDGQVYRLVTKSFFGTLEDHECPAILRLSLRLQVLLICCAESKAISD 436
            SQA+QR+GRTGRTCDGQ+YRLVT+SFF  L+++E PAILRLSLR QVL++CCAESKAI+D
Sbjct: 370  SQADQRKGRTGRTCDGQIYRLVTRSFFNKLQEYESPAILRLSLRQQVLMVCCAESKAIND 429

Query: 437  PKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSLSFDASVL 496
            P+VLLQK LDPP P V+ DAL+LL H +AL + S RGRYEPTFYGRLLASF LSFDAS +
Sbjct: 430  PRVLLQKTLDPPDPRVIEDALNLLVHIKALDRTSARGRYEPTFYGRLLASFPLSFDASFI 489

Query: 497  VLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEM 556
            VLKFG++G+LREGIL+GILMD QP PILHPFG++ LFAEY   Y+GGD N  +  GRKEM
Sbjct: 490  VLKFGDVGLLREGILIGILMDIQPQPILHPFGEEHLFAEYAYHYYGGDCNNMVRIGRKEM 549

Query: 557  VIMGNLCAFQFWQHVFK---RLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLH 613
            ++MGNLCA++FWQ VFK   RL+HL+++  FDE K   SLLPKIEEEWCS H LV SSLH
Sbjct: 550  ILMGNLCAYKFWQRVFKDRHRLEHLKRLSTFDEMKAVTSLLPKIEEEWCSFHNLVWSSLH 609

Query: 614  HVSELYEDILNAVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHL 673
             VSE+YEDIL+++HRFRP+FLG  +GLPTYYDPYEF H CLL      D+  +AAD+EH 
Sbjct: 610  QVSEIYEDILSSLHRFRPRFLGKCDGLPTYYDPYEFGHVCLLKSQQNEDIVVVAADDEHQ 669

Query: 674  GPSFEAKKCVAVPFVAPNQFQSNNVAEKLASIIKEIR-------VQYVE-DVSGNQDKAV 725
             PS E KKC AVPFV    FQ+ NVAEKL +I+KE+          YV  D SGN    V
Sbjct: 670  EPSSEIKKCCAVPFVDSGHFQTINVAEKLLTIVKEVNKLCTGNDSSYVNGDPSGNDAGYV 729

Query: 726  NG--SETPGEAPLCVYFINGSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSH 783
            N   S    EAPLCVYF+NGSCN+G+ C FSHSLQAK+PAC++F++LQGCRNG+SC FSH
Sbjct: 730  NEDVSHVNEEAPLCVYFVNGSCNKGSQCSFSHSLQAKKPACRYFFTLQGCRNGESCSFSH 789

Query: 784  DLGQPVLPSSSFTCLPEDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSR 843
            D+G  V   S   C PED   NA SLL+LFPTSSDG ILLL+D+D+HFS N AC YDPS+
Sbjct: 790  DIGSSVSSCSPAPCPPEDDDVNAVSLLQLFPTSSDGCILLLEDSDLHFSLNFACFYDPSK 849

Query: 844  IISTTCLSDSAICDTSLAGIRILWGLCHSLKTVISEAGDNPIPWKEVKCVLWYPSLESYS 903
            IISTTC+S++++ D SL G+RILW      +T+IS+AG N IPW EVKC+LW+PS  S S
Sbjct: 850  IISTTCMSETSLNDPSLNGVRILWEFRDPCRTIISKAGRNLIPWSEVKCILWFPSFASQS 909

Query: 904  ENLESQKTLMQNFFEHLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESF 963
            ENLE QK L+QNFF++LA R++AD+LY+ R+IITMNN++FAQLQVEKL R+SFFFL ESF
Sbjct: 910  ENLEGQKILVQNFFDYLASRIIADSLYELRIIITMNNVRFAQLQVEKLGRESFFFLGESF 969

Query: 964  PFDEMSFGELSDTVNTKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRD 1016
            PFDE SFGEL+D V T++PM  S+AISYVFDL PPTD QF DYAA LH+CL D
Sbjct: 970  PFDEASFGELADGVRTRKPMPASKAISYVFDLQPPTDIQFDDYAATLHKCLHD 1022

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743876|emb|CBI36846.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479904|ref|XP_002267435.2| PREDICTED: zinc finger CCCH domain-containing protein 31 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357442507|ref|XP_003591531.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355480579|gb|AES61782.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297828489|ref|XP_002882127.1| zinc finger helicase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327966|gb|EFH58386.1| zinc finger helicase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15227112|ref|NP_182290.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana] gi|75317978|sp|O22243.2|C3H31_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 31; Short=AtC3H31 gi|3738282|gb|AAC63624.1| putative ATP-dependent RNA helicase A [Arabidopsis thaliana] gi|225898609|dbj|BAH30435.1| hypothetical protein [Arabidopsis thaliana] gi|330255781|gb|AEC10875.1| zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449469086|ref|XP_004152252.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|122225040|sp|Q1EHT7.1|C3H4_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 gi|108792647|dbj|BAE95808.1| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357127870|ref|XP_003565600.1| PREDICTED: zinc finger CCCH domain-containing protein 4-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|413947016|gb|AFW79665.1| putative RNA helicase family protein [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1017
TAIR|locus:20434131015 AT2G47680 [Arabidopsis thalian 0.961 0.963 0.612 0.0
FB|FBgn0032883942 CG9323 [Drosophila melanogaste 0.169 0.182 0.396 7.1e-41
UNIPROTKB|E1C3881372 DHX29 "Uncharacterized protein 0.209 0.155 0.313 1.1e-40
UNIPROTKB|F1S9V4 1333 TDRD9 "Uncharacterized protein 0.429 0.327 0.305 4.3e-39
UNIPROTKB|Q8NDG6 1382 TDRD9 "Putative ATP-dependent 0.425 0.313 0.308 1e-38
MGI|MGI:1921941 1383 Tdrd9 "tudor domain containing 0.425 0.313 0.292 1.9e-38
UNIPROTKB|F1MNA1 1392 TDRD9 "Uncharacterized protein 0.426 0.311 0.300 2.9e-38
RGD|1306942 1384 Tdrd9 "tudor domain containing 0.425 0.312 0.289 3.9e-38
ZFIN|ZDB-GENE-090313-193 1344 tdrd9 "tudor domain containing 0.407 0.308 0.301 7e-38
UNIPROTKB|C3XYZ4 1475 BRAFLDRAFT_65715 "Putative unc 0.355 0.245 0.321 1.2e-37
TAIR|locus:2043413 AT2G47680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3151 (1114.3 bits), Expect = 0., P = 0.
 Identities = 611/998 (61%), Positives = 752/998 (75%)

Query:    28 VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENMEPILCTQPRRFXXXXXXXX 87
             +M+++ +I++K+LENRVTLIVGE GCGKSSQVPQFLL  NM PILCTQPRRF        
Sbjct:    28 IMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAPILCTQPRRFAVVAVAKM 87

Query:    88 XXXGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVH 147
                 RN +LGGE+GYHIGHSK L+E SKI+FKTAGVLLDEM D+GLNALKYKVIILDEVH
Sbjct:    88 VAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDEMLDKGLNALKYKVIILDEVH 147

Query:   148 ERSVESDXXXXXXXXXXXXXNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQ 207
             ERSVESD             NDLRVVLMSATADIT+YRDYF++LGRGERVEV+AIPS +Q
Sbjct:   148 ERSVESDLVLVCVKQFLMKNNDLRVVLMSATADITRYRDYFKELGRGERVEVVAIPSPDQ 207

Query:   208 RTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLH 267
             RTIFQRRV YLEQV  LLGV    +S+LS+  YC GPSPS A+ EIKPE+  LIHDL+L+
Sbjct:   208 RTIFQRRVLYLEQVAGLLGV----SSDLSA--YCPGPSPSSADTEIKPELQNLIHDLILY 261

Query:   268 IHKNESDIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSH 327
             IH+ E DIEKSILVFLPTYY+LEQQ+H ++P  + F+VHILH S+DTEQAL AMKIC+S 
Sbjct:   262 IHEKEPDIEKSILVFLPTYYSLEQQYHQLEPFFASFEVHILHRSIDTEQALAAMKICRSR 321

Query:   328 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTG 387
             RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWD +RK D+ +LVWVS+SQAEQRRGRTG
Sbjct:   322 RKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTG 381

Query:   388 RTCDGQVYRLVTKSFFGTLEDHECPAIXXXXXXXXXXXICCAESKAISDPKVLLQKALDP 447
             RTCDG+VYRLV  +FF  LE+HE P+I           ICC ES+AI+D   LL KA+DP
Sbjct:   382 RTCDGEVYRLVPSAFFNKLEEHEPPSILKLSLRQQVLHICCTESRAINDANALLAKAMDP 441

Query:   448 PYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRXXXXXXXXXXXXXXXXKFGEIGMLR 507
             P P+VV DAL +L   +AL+K SPRGRYEPTFYGR                KFGE+GMLR
Sbjct:   442 PDPDVVDDALRMLLSIQALRK-SPRGRYEPTFYGRLLASFPLSFDASILVVKFGEMGMLR 500

Query:   508 EGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQF 567
             +GILLG+LMDT PLPI HPFGDD+LF EY   YFGG  +  +  GR+EMV+M N CAFQF
Sbjct:   501 QGILLGVLMDTLPLPIHHPFGDDSLFLEYVDHYFGG--SKTISGGRREMVLMANFCAFQF 558

Query:   568 WQHVFK---RLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILN 624
             WQ VFK   RL++L+Q+L  ++ K    + P+IE+EWC  H + QSS +HVSELYED L+
Sbjct:   559 WQRVFKDKHRLENLKQLLSKEKDKDLKLMFPEIEKEWCDFHNIAQSSFYHVSELYEDTLS 618

Query:   625 AVHRFRPKFLGTSNGLPTYYDPYEFEHTCLLNCDPPRDMDPLAADNEHLGPSFEAKKCVA 684
             + HRFRP+F+ +S+  PTYY+PYEF+HTC + C P  D    + D ++  P  E +KCV+
Sbjct:   619 SFHRFRPQFISSSDSQPTYYNPYEFDHTCYIECQPSEDKYLHSEDVDNNQPPPEVRKCVS 678

Query:   685 VPFVAPNQFQSNNVAEKLASIIKEIRVQYVEDVSGNQDKAVNGSETP--GEAPLCVYFIN 742
             VPFV PN FQ+N +AE +ASIIKEIR Q     S N   A+   +    GEAP+CVYF+N
Sbjct:   679 VPFVPPNAFQANAIAENMASIIKEIRTQCTPSESDNGHGALEPEDYVEYGEAPVCVYFLN 738

Query:   743 GSCNRGTGCPFSHSLQAKRPACKFFYSLQGCRNGDSCIFSHDLGQPV---LPSSSFTCLP 799
             G CNRG  C F+H+LQ+ RPACKFF S QGCRNG+SC+FSH + +     LP     CLP
Sbjct:   739 GYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQ--CLP 796

Query:   800 EDGVANAASLLRLFPTSSDGSILLLDDTDMHFSANLACLYDPSRIISTTCLSDSAICDTS 859
             E+  ++ + LL LFPTSS+G IL+ DD+DMHF++++A  Y   RI+ST+  S++  CD+S
Sbjct:   797 EEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSS 856

Query:   860 LAGIRILWGLCHSLKTVISEAG-DNPIPWKEVKCVLWYPSLESYSENLESQKTLMQNFFE 918
             LA  RI WGL H  +T+IS+AG +NPIPW EVKCVLW+ + +SY++  E QKT++QNFFE
Sbjct:   857 LADTRIFWGLNHPYQTIISKAGRENPIPWNEVKCVLWFLNPDSYADTPEKQKTILQNFFE 916

Query:   919 HLAIRMLADALYDTRVIITMNNIKFAQLQVEKLARDSFFFLSESFPFDEMSFGELSDTVN 978
             H+AIR+L D LY  RV++TMNN++F+ LQVEKLAR+SFFFL ESFP D  SFG   DT+ 
Sbjct:   917 HMAIRLLGDKLYKIRVVLTMNNVRFSLLQVEKLARESFFFLGESFPHDSESFGAFQDTLT 976

Query:   979 TKRPMLVSRAISYVFDLHPPTDFQFGDYAAVLHRCLRD 1016
              ++PMLVSR ISYVF+LHPP+D QFG+Y ++L + L +
Sbjct:   977 IQKPMLVSRPISYVFNLHPPSDIQFGNYTSLLRKSLHN 1014
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0004386 "helicase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=ISS
GO:0008026 "ATP-dependent helicase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
FB|FBgn0032883 CG9323 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C388 DHX29 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9V4 TDRD9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NDG6 TDRD9 "Putative ATP-dependent RNA helicase TDRD9" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1921941 Tdrd9 "tudor domain containing 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNA1 TDRD9 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1306942 Tdrd9 "tudor domain containing 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-193 tdrd9 "tudor domain containing 9" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|C3XYZ4 BRAFLDRAFT_65715 "Putative uncharacterized protein" [Branchiostoma floridae (taxid:7739)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22243C3H31_ARATH3, ., 6, ., 4, ., -0.65500.96650.9684yesno
Q1EHT7C3H4_ORYSJ3, ., 6, ., 4, ., -0.56670.96160.9712yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1017
COG1643845 COG1643, HrpA, HrpA-like helicases [DNA replicatio 9e-78
TIGR01970819 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H 3e-38
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 4e-30
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 4e-30
PRK11664812 PRK11664, PRK11664, ATP-dependent RNA helicase Hrp 3e-25
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 8e-20
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-18
PHA02653675 PHA02653, PHA02653, RNA helicase NPH-II; Provision 8e-17
TIGR01967 1283 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H 9e-14
PRK11131 1294 PRK11131, PRK11131, ATP-dependent RNA helicase Hrp 8e-12
smart0049082 smart00490, HELICc, helicase superfamily c-termina 3e-09
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 5e-08
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 1e-06
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 5e-06
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 2e-05
smart0035627 smart00356, ZnF_C3H1, zinc finger 3e-04
COG5084285 COG5084, YTH1, Cleavage and polyadenylation specif 4e-04
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 8e-04
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  272 bits (697), Expect = 9e-78
 Identities = 159/533 (29%), Positives = 249/533 (46%), Gaps = 93/533 (17%)

Query: 3   PSSPTSSCSSSYSSPFTSPEFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQF 62
            S   +   S+          S LPV ++R++I++ + +N+V +IVGETG GK++Q+PQF
Sbjct: 27  GSGMDARSRSANVPDI-LEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQF 85

Query: 63  LLAENMEP---ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119
           LL E +     I CTQPRR A  +VA+ VA+    +LG  VGY I     +S R++I   
Sbjct: 86  LLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVM 145

Query: 120 TAGVLLDEMR-DRGLNALKYKVIILDEVHERSVESDLVLVCVKQLL-LKKNDLRVVLMSA 177
           T G+LL E++ D  L+   Y V+I+DE HERS+ +D++L  +K LL  +++DL++++MSA
Sbjct: 146 TDGILLREIQNDPLLS--GYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSA 203

Query: 178 TADITKYRDYFRDL------GRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGM 231
           T D  ++  YF +       GR   VE                + YL +      +   +
Sbjct: 204 TLDAERFSAYFGNAPVIEIEGRTYPVE----------------IRYLPEAEADYILLDAI 247

Query: 232 TSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESDIEKSILVFLP------- 284
            +                                + IH  E     SILVFLP       
Sbjct: 248 VA-------------------------------AVDIHLREG--SGSILVFLPGQREIER 274

Query: 285 TYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKIC-KSHRKVILATNIAESSVTI 343
           T   LE+       L    ++  L+ ++  E+ +   +      RKV+LATNIAE+S+TI
Sbjct: 275 TAEWLEK-----AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTI 329

Query: 344 PKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFF 403
           P + YVIDS  + +  +D    +   E   +S++ A+QR GR GRT  G  YRL ++  F
Sbjct: 330 PGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDF 389

Query: 404 GTLEDHECPAILRLSLRLQVLLICCAESKAIS-DPKVLLQKALDPPYPEVVGDALDLLDH 462
               +   P ILR  L   ++L    + K++     +     LDPP    +  AL LL  
Sbjct: 390 LAFPEFTLPEILRTDLS-GLVL----QLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQE 444

Query: 463 KRALQ---KISPRGRYEPTFYGRLLASFSLSFDASVLVLKFGEIGMLREGILL 512
             AL    K++P G+         ++   L    + ++L   E G L E   +
Sbjct: 445 LGALDDSGKLTPLGKQ--------MSLLPLDPRLARMLLTAPEGGCLGEAATI 489

Length = 845
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB Back     alignment and domain information
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional Back     alignment and domain information
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA Back     alignment and domain information
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger Back     alignment and domain information
>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1017
KOG0923902 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG0922674 consensus DEAH-box RNA helicase [RNA processing an 100.0
KOG0925699 consensus mRNA splicing factor ATP-dependent RNA h 100.0
KOG09241042 consensus mRNA splicing factor ATP-dependent RNA h 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
KOG0920924 consensus ATP-dependent RNA helicase A [RNA proces 100.0
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 100.0
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 100.0
KOG09261172 consensus DEAH-box RNA helicase [RNA processing an 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
KOG09211282 consensus Dosage compensation complex, subunit MLE 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
KOG0331519 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00110545 helicase; Provisional 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
KOG0330476 consensus ATP-dependent RNA helicase [RNA processi 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 99.98
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 99.97
COG1204766 Superfamily II helicase [General function predicti 99.97
COG1202830 Superfamily II helicase, archaea-specific [General 99.97
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 99.97
KOG0345567 consensus ATP-dependent RNA helicase [RNA processi 99.97
PRK13767876 ATP-dependent helicase; Provisional 99.97
KOG0342543 consensus ATP-dependent RNA helicase pitchoune [RN 99.97
KOG0338691 consensus ATP-dependent RNA helicase [RNA processi 99.97
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 99.97
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 99.97
KOG0333673 consensus U5 snRNP-like RNA helicase subunit [RNA 99.97
KOG0328400 consensus Predicted ATP-dependent RNA helicase FAL 99.97
KOG0343758 consensus RNA Helicase [RNA processing and modific 99.97
KOG0340442 consensus ATP-dependent RNA helicase [RNA processi 99.97
COG1201814 Lhr Lhr-like helicases [General function predictio 99.96
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 99.96
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 99.96
KOG0335482 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 99.96
KOG0339731 consensus ATP-dependent RNA helicase [RNA processi 99.96
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 99.95
KOG0354746 consensus DEAD-box like helicase [General function 99.95
KOG0348708 consensus ATP-dependent RNA helicase [RNA processi 99.95
TIGR00643630 recG ATP-dependent DNA helicase RecG. 99.95
KOG0332477 consensus ATP-dependent RNA helicase [RNA processi 99.95
PRK106891147 transcription-repair coupling factor; Provisional 99.95
KOG0347731 consensus RNA helicase [RNA processing and modific 99.95
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 99.95
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 99.95
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 99.95
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 99.94
PHA02558501 uvsW UvsW helicase; Provisional 99.94
KOG0326459 consensus ATP-dependent RNA helicase [RNA processi 99.94
KOG0341610 consensus DEAD-box protein abstrakt [RNA processin 99.94
KOG0350620 consensus DEAD-box ATP-dependent RNA helicase [RNA 99.93
PRK13766773 Hef nuclease; Provisional 99.93
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 99.93
KOG4284980 consensus DEAD box protein [Transcription] 99.92
KOG0346569 consensus RNA helicase [RNA processing and modific 99.92
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 99.92
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 99.91
KOG0344593 consensus ATP-dependent RNA helicase [RNA processi 99.91
KOG0334997 consensus RNA helicase [RNA processing and modific 99.91
KOG0352641 consensus ATP-dependent DNA helicase [Replication, 99.91
COG1205851 Distinct helicase family with a unique C-terminal 99.9
KOG0327397 consensus Translation initiation factor 4F, helica 99.9
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 99.89
KOG0951 1674 consensus RNA helicase BRR2, DEAD-box superfamily 99.89
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.89
PRK09401 1176 reverse gyrase; Reviewed 99.88
PRK05580679 primosome assembly protein PriA; Validated 99.88
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.88
PRK14701 1638 reverse gyrase; Provisional 99.87
KOG0351941 consensus ATP-dependent DNA helicase [Replication, 99.87
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 99.87
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.87
KOG0337529 consensus ATP-dependent RNA helicase [RNA processi 99.87
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.87
PRK09694878 helicase Cas3; Provisional 99.87
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.86
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.85
COG11971139 Mfd Transcription-repair coupling factor (superfam 99.85
PRK09200790 preprotein translocase subunit SecA; Reviewed 99.84
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 99.84
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 99.84
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 99.84
KOG09211282 consensus Dosage compensation complex, subunit MLE 99.8
KOG09501008 consensus DNA polymerase theta/eta, DEAD-box super 99.79
PRK04914956 ATP-dependent helicase HepA; Validated 99.77
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.75
KOG0353695 consensus ATP-dependent DNA helicase [General func 99.73
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.69
COG4096875 HsdR Type I site-specific restriction-modification 99.68
KOG0329387 consensus ATP-dependent RNA helicase [RNA processi 99.68
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.67
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.65
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.65
KOG09491330 consensus Predicted helicase, DEAD-box superfamily 99.62
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.62
KOG0349725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.61
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.55
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.55
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.54
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.53
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.51
KOG0953700 consensus Mitochondrial RNA helicase SUV3, DEAD-bo 99.5
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.45
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.42
KOG1123776 consensus RNA polymerase II transcription initiati 99.41
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.41
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 99.41
smart00487201 DEXDc DEAD-like helicases superfamily. 99.41
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.32
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.3
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 99.28
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.27
KOG41501034 consensus Predicted ATP-dependent RNA helicase [RN 99.26
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.24
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.2
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.19
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.18
PRK05298652 excinuclease ABC subunit B; Provisional 99.16
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.15
KOG0385971 consensus Chromatin remodeling complex WSTF-ISWI, 99.15
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.12
KOG0387923 consensus Transcription-coupled repair protein CSB 99.1
PF02399824 Herpes_ori_bp: Origin of replication binding prote 99.1
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.07
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.0
smart0049082 HELICc helicase superfamily c-terminal domain. 98.98
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 98.95
KOG09511674 consensus RNA helicase BRR2, DEAD-box superfamily 98.92
CHL00122870 secA preprotein translocase subunit SecA; Validate 98.91
COG0556663 UvrB Helicase subunit of the DNA excision repair c 98.84
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 98.82
COG4889 1518 Predicted helicase [General function prediction on 98.8
KOG03841373 consensus Chromodomain-helicase DNA-binding protei 98.73
PRK14873665 primosome assembly protein PriA; Provisional 98.72
KOG0390776 consensus DNA repair protein, SNF2 family [Replica 98.7
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 98.69
KOG1000689 consensus Chromatin remodeling protein HARP/SMARCA 98.51
KOG1040325 consensus Polyadenylation factor I complex, subuni 98.32
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 98.3
KOG03921549 consensus SNF2 family DNA-dependent ATPase domain- 98.27
COG0610962 Type I site-specific restriction-modification syst 98.21
KOG0389941 consensus SNF2 family DNA-dependent ATPase [Chroma 98.12
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.04
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 97.97
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 97.94
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 97.87
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.85
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 97.84
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 97.82
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 97.81
KOG1763343 consensus Uncharacterized conserved protein, conta 97.81
PF10354166 DUF2431: Domain of unknown function (DUF2431); Int 97.78
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.76
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 97.72
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 97.69
COG1419407 FlhF Flagellar GTP-binding protein [Cell motility 97.68
smart00488289 DEXDc2 DEAD-like helicases superfamily. 97.56
smart00489289 DEXDc3 DEAD-like helicases superfamily. 97.56
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 97.55
smart0035627 ZnF_C3H1 zinc finger. 97.55
PRK10875615 recD exonuclease V subunit alpha; Provisional 97.54
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.52
PRK10536262 hypothetical protein; Provisional 97.51
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 97.51
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 97.48
PF1324576 AAA_19: Part of AAA domain 97.47
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 97.44
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 97.41
KOG1002791 consensus Nucleotide excision repair protein RAD16 97.38
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 97.38
KOG1492377 consensus C3H1-type Zn-finger protein [General fun 97.35
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 97.34
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 97.32
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.3
COG5252299 Uncharacterized conserved protein, contains CCCH-t 97.28
PRK05703424 flhF flagellar biosynthesis regulator FlhF; Valida 97.27
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 97.22
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 97.2
PRK06526254 transposase; Provisional 97.19
PRK04296190 thymidine kinase; Provisional 97.16
smart00382148 AAA ATPases associated with a variety of cellular 97.14
smart0035627 ZnF_C3H1 zinc finger. 97.14
PRK13889988 conjugal transfer relaxase TraA; Provisional 97.11
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 97.1
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.08
PRK14974336 cell division protein FtsY; Provisional 97.04
PRK15483986 type III restriction-modification system StyLTI en 97.02
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 97.01
PRK12724432 flagellar biosynthesis regulator FlhF; Provisional 97.01
PRK12727559 flagellar biosynthesis regulator FlhF; Provisional 96.99
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 96.91
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 96.89
PRK14723767 flhF flagellar biosynthesis regulator FlhF; Provis 96.87
PRK12726407 flagellar biosynthesis regulator FlhF; Provisional 96.87
PF13173128 AAA_14: AAA domain 96.84
PRK08181269 transposase; Validated 96.83
PRK14721420 flhF flagellar biosynthesis regulator FlhF; Provis 96.8
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 96.79
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.78
PRK138261102 Dtr system oriT relaxase; Provisional 96.71
KOG03911958 consensus SNF2 family DNA-dependent ATPase [Genera 96.65
PRK06835329 DNA replication protein DnaC; Validated 96.63
COG5063351 CTH1 CCCH-type Zn-finger protein [General function 96.56
KOG2333 614 consensus Uncharacterized conserved protein [Gener 96.54
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 96.53
PRK08727233 hypothetical protein; Validated 96.45
KOG09521230 consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup 96.42
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 96.41
COG5084285 YTH1 Cleavage and polyadenylation specificity fact 96.38
PF05127177 Helicase_RecD: Helicase; InterPro: IPR007807 This 96.38
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 96.28
KOG1040325 consensus Polyadenylation factor I complex, subuni 96.28
PF05729166 NACHT: NACHT domain 96.24
PRK08116268 hypothetical protein; Validated 96.22
PRK06995484 flhF flagellar biosynthesis regulator FlhF; Valida 96.19
PRK05642234 DNA replication initiation factor; Validated 96.13
PRK10416318 signal recognition particle-docking protein FtsY; 96.12
PRK06893229 DNA replication initiation factor; Validated 96.1
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 96.08
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 96.07
PF01695178 IstB_IS21: IstB-like ATP binding protein; InterPro 96.05
PRK00771437 signal recognition particle protein Srp54; Provisi 96.04
TIGR02640262 gas_vesic_GvpN gas vesicle protein GvpN. Members o 96.03
PRK08084235 DNA replication initiation factor; Provisional 96.02
KOG2340698 consensus Uncharacterized conserved protein [Funct 95.96
PRK07952244 DNA replication protein DnaC; Validated 95.92
KOG1802935 consensus RNA helicase nonsense mRNA reducing fact 95.9
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 95.88
TIGR03015269 pepcterm_ATPase putative secretion ATPase, PEP-CTE 95.87
TIGR03499282 FlhF flagellar biosynthetic protein FlhF. 95.87
TIGR00376637 DNA helicase, putative. The gene product may repre 95.86
PHA03333752 putative ATPase subunit of terminase; Provisional 95.83
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 95.81
PF1460819 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type 95.79
TIGR00064272 ftsY signal recognition particle-docking protein F 95.77
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 95.75
PRK00411394 cdc6 cell division control protein 6; Reviewed 95.71
PRK14956484 DNA polymerase III subunits gamma and tau; Provisi 95.71
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 95.69
PRK13894319 conjugal transfer ATPase TrbB; Provisional 95.67
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 95.65
COG2804500 PulE Type II secretory pathway, ATPase PulE/Tfp pi 95.59
KOG2185486 consensus Predicted RNA-processing protein, contai 95.56
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 95.54
PRK07003830 DNA polymerase III subunits gamma and tau; Validat 95.54
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 95.53
PRK06921266 hypothetical protein; Provisional 95.51
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 95.5
TIGR01425429 SRP54_euk signal recognition particle protein SRP5 95.49
PF00004132 AAA: ATPase family associated with various cellula 95.49
PTZ001121164 origin recognition complex 1 protein; Provisional 95.43
PRK09183259 transposase/IS protein; Provisional 95.4
COG1219408 ClpX ATP-dependent protease Clp, ATPase subunit [P 95.36
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 95.29
PRK04841903 transcriptional regulator MalT; Provisional 95.27
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 95.25
PRK12402337 replication factor C small subunit 2; Reviewed 95.25
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.24
cd01130186 VirB11-like_ATPase Type IV secretory pathway compo 95.23
PRK12323700 DNA polymerase III subunits gamma and tau; Provisi 95.22
PRK07994647 DNA polymerase III subunits gamma and tau; Validat 95.22
PHA00729226 NTP-binding motif containing protein 95.21
PRK13851344 type IV secretion system protein VirB11; Provision 95.16
KOG4791 667 consensus Uncharacterized conserved protein [Funct 95.15
PRK14961363 DNA polymerase III subunits gamma and tau; Provisi 95.12
PRK08903227 DnaA regulatory inactivator Hda; Validated 95.12
PRK14949944 DNA polymerase III subunits gamma and tau; Provisi 95.09
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.03
KOG2185486 consensus Predicted RNA-processing protein, contai 95.03
KOG03881185 consensus SNF2 family DNA-dependent ATPase [Replic 95.03
PRK14964491 DNA polymerase III subunits gamma and tau; Provisi 95.03
PHA02244383 ATPase-like protein 95.03
KOG0989346 consensus Replication factor C, subunit RFC4 [Repl 95.03
PRK14088440 dnaA chromosomal replication initiation protein; P 95.0
KOG1677332 consensus CCCH-type Zn-finger protein [General fun 94.99
PRK09087226 hypothetical protein; Validated 94.96
PRK14957546 DNA polymerase III subunits gamma and tau; Provisi 94.96
PRK12422445 chromosomal replication initiation protein; Provis 94.95
PRK12377248 putative replication protein; Provisional 94.95
PRK14960702 DNA polymerase III subunits gamma and tau; Provisi 94.94
PRK14958509 DNA polymerase III subunits gamma and tau; Provisi 94.91
PRK09112351 DNA polymerase III subunit delta'; Validated 94.84
COG1484254 DnaC DNA replication protein [DNA replication, rec 94.82
PRK06645507 DNA polymerase III subunits gamma and tau; Validat 94.81
PRK14087450 dnaA chromosomal replication initiation protein; P 94.79
PRK08691709 DNA polymerase III subunits gamma and tau; Validat 94.78
PRK08939306 primosomal protein DnaI; Reviewed 94.74
TIGR02788308 VirB11 P-type DNA transfer ATPase VirB11. The VirB 94.71
PRK00149450 dnaA chromosomal replication initiation protein; R 94.71
KOG1803649 consensus DNA helicase [Replication, recombination 94.67
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 94.62
PRK09111598 DNA polymerase III subunits gamma and tau; Validat 94.61
TIGR02928365 orc1/cdc6 family replication initiation protein. M 94.59
cd01129264 PulE-GspE PulE/GspE The type II secretory pathway 94.52
PRK10867433 signal recognition particle protein; Provisional 94.42
cd03115173 SRP The signal recognition particle (SRP) mediates 94.42
PF05496233 RuvB_N: Holliday junction DNA helicase ruvB N-term 94.41
TIGR027601960 TraI_TIGR conjugative transfer relaxase protein Tr 94.37
PHA02533534 17 large terminase protein; Provisional 94.36
PRK147121623 conjugal transfer nickase/helicase TraI; Provision 94.34
TIGR00362405 DnaA chromosomal replication initiator protein Dna 94.33
PRK14086617 dnaA chromosomal replication initiation protein; P 94.29
PRK07764824 DNA polymerase III subunits gamma and tau; Validat 94.27
PRK14969527 DNA polymerase III subunits gamma and tau; Provisi 94.2
CHL00181287 cbbX CbbX; Provisional 94.18
PRK10436462 hypothetical protein; Provisional 94.17
KOG2373514 consensus Predicted mitochondrial DNA helicase twi 94.17
TIGR01650327 PD_CobS cobaltochelatase, CobS subunit. This model 94.13
PRK11331459 5-methylcytosine-specific restriction enzyme subun 94.12
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 94.12
PHA02544316 44 clamp loader, small subunit; Provisional 94.11
PRK06620214 hypothetical protein; Validated 94.06
KOG0741744 consensus AAA+-type ATPase [Posttranslational modi 94.03
PRK14952584 DNA polymerase III subunits gamma and tau; Provisi 93.99
TIGR00959428 ffh signal recognition particle protein. This mode 93.94
PTZ00293211 thymidine kinase; Provisional 93.84
PF01443234 Viral_helicase1: Viral (Superfamily 1) RNA helicas 93.82
PRK14951618 DNA polymerase III subunits gamma and tau; Provisi 93.82
PRK14962472 DNA polymerase III subunits gamma and tau; Provisi 93.81
TIGR02880284 cbbX_cfxQ probable Rubsico expression protein CbbX 93.79
PRK137091747 conjugal transfer nickase/helicase TraI; Provision 93.77
PF00437270 T2SE: Type II/IV secretion system protein; InterPr 93.77
KOG2228408 consensus Origin recognition complex, subunit 4 [R 93.75
TIGR00678188 holB DNA polymerase III, delta' subunit. At positi 93.73
KOG18051100 consensus DNA replication helicase [Replication, r 93.72
PF03266168 NTPase_1: NTPase; InterPro: IPR004948 This entry r 93.7
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 93.66
TIGR02533486 type_II_gspE general secretory pathway protein E. 93.65
COG2256436 MGS1 ATPase related to the helicase subunit of the 93.51
PRK13833323 conjugal transfer protein TrbB; Provisional 93.5
PLN03025319 replication factor C subunit; Provisional 93.46
PRK14955397 DNA polymerase III subunits gamma and tau; Provisi 93.4
PRK14959624 DNA polymerase III subunits gamma and tau; Provisi 93.38
KOG4791 667 consensus Uncharacterized conserved protein [Funct 93.38
TIGR02538564 type_IV_pilB type IV-A pilus assembly ATPase PilB. 93.34
COG1702348 PhoH Phosphate starvation-inducible protein PhoH, 93.34
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 93.24
PRK13900332 type IV secretion system ATPase VirB11; Provisiona 93.18
COG5152259 Uncharacterized conserved protein, contains RING a 93.15
PRK04195482 replication factor C large subunit; Provisional 93.09
PRK00440319 rfc replication factor C small subunit; Reviewed 93.06
PF13177162 DNA_pol3_delta2: DNA polymerase III, delta subunit 93.01
PRK14950585 DNA polymerase III subunits gamma and tau; Provisi 92.98
TIGR03819340 heli_sec_ATPase helicase/secretion neighborhood AT 92.98
KOG0391 1958 consensus SNF2 family DNA-dependent ATPase [Genera 92.94
cd01124187 KaiC KaiC is a circadian clock protein primarily f 92.89
PF00931287 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is 92.85
PHA03368738 DNA packaging terminase subunit 1; Provisional 92.77
PRK07133725 DNA polymerase III subunits gamma and tau; Validat 92.76
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 92.7
PRK13342413 recombination factor protein RarA; Reviewed 92.66
PRK08451535 DNA polymerase III subunits gamma and tau; Validat 92.64
KOG1132945 consensus Helicase of the DEAD superfamily [Replic 92.62
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 92.6
PRK14953486 DNA polymerase III subunits gamma and tau; Provisi 92.56
PRK14965576 DNA polymerase III subunits gamma and tau; Provisi 92.53
TIGR00635305 ruvB Holliday junction DNA helicase, RuvB subunit. 92.47
TIGR02858270 spore_III_AA stage III sporulation protein AA. Mem 92.46
COG0552340 FtsY Signal recognition particle GTPase [Intracell 92.27
CHL00176638 ftsH cell division protein; Validated 92.25
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 92.18
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 92.17
COG0541451 Ffh Signal recognition particle GTPase [Intracellu 92.12
PRK14948620 DNA polymerase III subunits gamma and tau; Provisi 92.11
cd03247178 ABCC_cytochrome_bd The CYD subfamily implicated in 92.03
cd00267157 ABC_ATPase ABC (ATP-binding cassette) transporter 92.02
TIGR02785 1232 addA_Gpos recombination helicase AddA, Firmicutes 91.9
cd03221144 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is 91.88
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 91.83
PRK14963504 DNA polymerase III subunits gamma and tau; Provisi 91.78
PRK14954620 DNA polymerase III subunits gamma and tau; Provisi 91.72
PRK10865857 protein disaggregation chaperone; Provisional 91.71
COG3587985 Restriction endonuclease [Defense mechanisms] 91.7
PRK14970367 DNA polymerase III subunits gamma and tau; Provisi 91.7
TIGR02524358 dot_icm_DotB Dot/Icm secretion system ATPase DotB. 91.61
TIGR02688449 conserved hypothetical protein TIGR02688. Members 91.55
PRK05896605 DNA polymerase III subunits gamma and tau; Validat 91.53
PRK05342412 clpX ATP-dependent protease ATP-binding subunit Cl 91.5
cd03228171 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein 91.48
TIGR02397355 dnaX_nterm DNA polymerase III, subunit gamma and t 91.41
PRK05563559 DNA polymerase III subunits gamma and tau; Validat 91.39
cd03239178 ABC_SMC_head The structural maintenance of chromos 91.3
PF1355562 AAA_29: P-loop containing region of AAA domain 91.23
COG5008375 PilU Tfp pilus assembly protein, ATPase PilU [Cell 91.14
COG1474366 CDC6 Cdc6-related protein, AAA superfamily ATPase 91.04
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 91.01
PRK11823446 DNA repair protein RadA; Provisional 91.01
PRK00080328 ruvB Holliday junction DNA helicase RuvB; Reviewed 90.98
COG0470325 HolB ATPase involved in DNA replication [DNA repli 90.93
COG1618179 Predicted nucleotide kinase [Nucleotide transport 90.89
TIGR02639731 ClpA ATP-dependent Clp protease ATP-binding subuni 90.87
PRK07471365 DNA polymerase III subunit delta'; Validated 90.84
cd03238176 ABC_UvrA The excision repair protein UvrA; Nucleot 90.77
PRK13341725 recombination factor protein RarA/unknown domain f 90.76
TIGR01241495 FtsH_fam ATP-dependent metalloprotease FtsH. HflB( 90.67
cd03216163 ABC_Carb_Monos_I This family represents the domain 90.64
COG2255332 RuvB Holliday junction resolvasome, helicase subun 90.59
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 90.53
cd00544169 CobU Adenosylcobinamide kinase / adenosylcobinamid 90.52
PRK07940394 DNA polymerase III subunit delta'; Validated 90.47
COG5152259 Uncharacterized conserved protein, contains RING a 90.47
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 90.35
PRK06067234 flagellar accessory protein FlaH; Validated 90.34
cd01121372 Sms Sms (bacterial radA) DNA repair protein. This 90.32
COG3421812 Uncharacterized protein conserved in bacteria [Fun 90.32
COG0556663 UvrB Helicase subunit of the DNA excision repair c 90.31
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 90.19
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 90.05
KOG2543438 consensus Origin recognition complex, subunit 5 [R 89.98
COG0593408 DnaA ATPase involved in DNA replication initiation 89.95
TIGR03689512 pup_AAA proteasome ATPase. In the Actinobacteria, 89.83
PRK06647563 DNA polymerase III subunits gamma and tau; Validat 89.82
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 89.82
PRK05707328 DNA polymerase III subunit delta'; Validated 89.81
PF00265176 TK: Thymidine kinase; InterPro: IPR001267 Thymidin 89.77
KOG1763343 consensus Uncharacterized conserved protein, conta 89.71
cd01131198 PilT Pilus retraction ATPase PilT. PilT is a nucle 89.69
cd03281213 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS 89.65
cd03246173 ABCC_Protease_Secretion This family represents the 89.5
cd03222177 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi 89.43
COG1435201 Tdk Thymidine kinase [Nucleotide transport and met 89.39
COG1223368 Predicted ATPase (AAA+ superfamily) [General funct 89.39
KOG4439901 consensus RNA polymerase II transcription terminat 89.37
PRK11054684 helD DNA helicase IV; Provisional 89.35
cd03230173 ABC_DR_subfamily_A This family of ATP-binding prot 89.33
KOG0745564 consensus Putative ATP-dependent Clp-type protease 89.16
TIGR01243733 CDC48 AAA family ATPase, CDC48 subfamily. This sub 89.05
PRK14971614 DNA polymerase III subunits gamma and tau; Provisi 88.96
cd01123235 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r 88.87
TIGR00602637 rad24 checkpoint protein rad24. This family is bas 88.87
PLN00020413 ribulose bisphosphate carboxylase/oxygenase activa 88.85
cd01393226 recA_like RecA is a bacterial enzyme which has rol 88.82
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 88.76
COG1126240 GlnQ ABC-type polar amino acid transport system, A 88.64
TIGR02525372 plasmid_TraJ plasmid transfer ATPase TraJ. Members 88.51
PLN02165334 adenylate isopentenyltransferase 88.47
TIGR00763775 lon ATP-dependent protease La. This protein is ind 88.44
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 88.4
KOG2494331 consensus C3H1-type Zn-finger protein [Transcripti 88.39
PF02367123 UPF0079: Uncharacterised P-loop hydrolase UPF0079; 88.32
CHL00095821 clpC Clp protease ATP binding subunit 88.32
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 88.26
PF12775272 AAA_7: P-loop containing dynein motor region D3; P 88.26
COG3267269 ExeA Type II secretory pathway, component ExeA (pr 88.25
cd03229178 ABC_Class3 This class is comprised of all BPD (Bin 88.19
KOG10151567 consensus Transcription regulator XNP/ATRX, DEAD-b 88.18
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 88.04
cd03215182 ABC_Carb_Monos_II This family represents domain II 88.02
PRK13695174 putative NTPase; Provisional 88.01
TIGR01420343 pilT_fam pilus retraction protein PilT. This model 87.95
cd03282204 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS 87.93
PRK08769319 DNA polymerase III subunit delta'; Validated 87.92
cd03243202 ABC_MutS_homologs The MutS protein initiates DNA m 87.9
PRK11034758 clpA ATP-dependent Clp protease ATP-binding subuni 87.89
PF12846304 AAA_10: AAA-like domain 87.86
PRK13764602 ATPase; Provisional 87.86
PF13671143 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 87.81
PRK03992389 proteasome-activating nucleotidase; Provisional 87.73
COG0630312 VirB11 Type IV secretory pathway, VirB11 component 87.72
PRK10787784 DNA-binding ATP-dependent protease La; Provisional 87.64
cd03214180 ABC_Iron-Siderophores_B12_Hemin ABC transporters, 87.57
PRK09354349 recA recombinase A; Provisional 87.49
TIGR03345852 VI_ClpV1 type VI secretion ATPase, ClpV1 family. M 87.4
CHL00095821 clpC Clp protease ATP binding subunit 87.32
PTZ00454398 26S protease regulatory subunit 6B-like protein; P 87.3
PRK06305451 DNA polymerase III subunits gamma and tau; Validat 87.25
PHA03372668 DNA packaging terminase subunit 1; Provisional 87.17
COG1136226 SalX ABC-type antimicrobial peptide transport syst 87.12
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 87.1
PRK07399314 DNA polymerase III subunit delta'; Validated 87.09
PRK11174588 cysteine/glutathione ABC transporter membrane/ATP- 87.04
KOG1969877 consensus DNA replication checkpoint protein CHL12 86.93
COG0466782 Lon ATP-dependent Lon protease, bacterial type [Po 86.91
COG0396251 sufC Cysteine desulfurase activator ATPase [Posttr 86.79
TIGR03346852 chaperone_ClpB ATP-dependent chaperone ClpB. Membe 86.6
TIGR00767415 rho transcription termination factor Rho. Members 86.44
TIGR02012321 tigrfam_recA protein RecA. This model describes or 86.44
PRK10865857 protein disaggregation chaperone; Provisional 86.38
KOG0733802 consensus Nuclear AAA ATPase (VCP subfamily) [Post 86.34
PRK08233182 hypothetical protein; Provisional 86.32
cd03223166 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass 86.31
TIGR02974329 phageshock_pspF psp operon transcriptional activat 86.01
PRK14729300 miaA tRNA delta(2)-isopentenylpyrophosphate transf 85.96
PF06745226 KaiC: KaiC; InterPro: IPR014774 This entry represe 85.73
PRK00300205 gmk guanylate kinase; Provisional 85.7
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=5e-116  Score=984.98  Aligned_cols=585  Identities=27%  Similarity=0.384  Sum_probs=520.5

Q ss_pred             CcCCCCchHHHHHHHHHHHcCCcEEEEcCCCCcHhHHHHHHHHhcCCC----cEEEeccHHHHHHHHHHHHHhhcCCccC
Q 001758           22 EFSSLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENME----PILCTQPRRFAVVAVAKMVAKGRNCELG   97 (1017)
Q Consensus        22 ~r~~LPi~~~Q~eil~ai~~~~~vII~apTGSGKTtqip~~lle~~~~----~IivtqPrrlaa~s~a~rva~e~~~~lg   97 (1017)
                      .|+.|||++++++++.++.+|+++||.|+||||||||+||||.|.|..    +|.||||||+||+++|.||++|+|+.+|
T Consensus       260 ~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG  339 (902)
T KOG0923|consen  260 VRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG  339 (902)
T ss_pred             HHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence            388999999999999999999999999999999999999999999873    4999999999999999999999999999


Q ss_pred             CeeeEeeccccccCCCCcEEEECHHHHHHHHHhcCCCccCceEEEEeccccccccccHHHHHHHHHHhcCCCceEEEEee
Q 001758           98 GEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSA  177 (1017)
Q Consensus        98 ~~VGy~v~~~~~~~~~t~Iiv~T~g~Ll~~l~~~~l~l~~~~~IIIDEaHER~~~~d~ll~~lk~ll~~~~~lklIlmSA  177 (1017)
                      ..|||+|+|++.++.+|.|.|||+|||++++...+ .+..|++|||||||||++++|+|.+++|++.+.||++|++++||
T Consensus       340 ~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSA  418 (902)
T KOG0923|consen  340 HEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSA  418 (902)
T ss_pred             cccceEEEeccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeecc
Confidence            99999999999999999999999999999999765 36699999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHHHhhcCCCceeEEEEecCCCcceeeeeEeehHHHHHHHhccCCCCccccccccccCCCCCCccccccchhH
Q 001758          178 TADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEV  257 (1017)
Q Consensus       178 Tld~~~~~~~f~~~~~~~~v~v~~~p~~~~~~~~~v~v~yl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (1017)
                      |+|+++|+.||++      ++++.+|+    +.|||.++|...                       +..+|         
T Consensus       419 T~DAekFS~fFDd------apIF~iPG----RRyPVdi~Yt~~-----------------------PEAdY---------  456 (902)
T KOG0923|consen  419 TMDAEKFSAFFDD------APIFRIPG----RRYPVDIFYTKA-----------------------PEADY---------  456 (902)
T ss_pred             ccCHHHHHHhccC------CcEEeccC----cccceeeecccC-----------------------CchhH---------
Confidence            9999999999987      78899997    679999987442                       22233         


Q ss_pred             HHHHHHHHHHHHhhCCCCCCCEEEEeCCHHHHHHHHHHhc-------CCCCCcEEEEecCCCCHHHHHHHHHhccCC-cE
Q 001758          258 HKLIHDLVLHIHKNESDIEKSILVFLPTYYALEQQWHLMK-------PLSSFFKVHILHSSVDTEQALMAMKICKSH-RK  329 (1017)
Q Consensus       258 ~~li~~lv~~i~~~~~~~~g~iLVFl~~~~~ie~l~~~L~-------~~~~~~~v~~lHs~l~~~er~~i~~~f~~g-rk  329 (1017)
                      .+.....+..||.+.+  .|+||||+.|.++|+...+.|.       .....+-|.|+|++||.+.|.+|++.-+.| ||
T Consensus       457 ldAai~tVlqIH~tqp--~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK  534 (902)
T KOG0923|consen  457 LDAAIVTVLQIHLTQP--LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK  534 (902)
T ss_pred             HHHHHhhheeeEeccC--CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence            3444467888998887  5899999999999987666554       334567899999999999999999876554 69


Q ss_pred             EEEEcCcccccccCCCeeEEEeCCccceeeecCCCCccccceeecCHhhHHHhcCCCCCCCCCcEEEEechhhhc-cccc
Q 001758          330 VILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLVTKSFFG-TLED  408 (1017)
Q Consensus       330 VIVATniaetGIdIP~V~~VId~G~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rLys~~~~~-~l~~  408 (1017)
                      ||+||||||+||||++|+||||+|++|+..|++.+++++|.++|||||++.||+|||||++||+|||||+...|+ .+.+
T Consensus       535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~  614 (902)
T KOG0923|consen  535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE  614 (902)
T ss_pred             EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998775 7888


Q ss_pred             cCCchhhhccHHHHHHHHHhhccccCCChHHhhhhccCCCCCchHHHHHHHHHHhhhcccCCCCCccccccchhhhcccC
Q 001758          409 HECPAILRLSLRLQVLLICCAESKAISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFS  488 (1017)
Q Consensus       409 ~~~PEI~r~~L~~~vL~l~~~~~~~l~~~~~~l~~~ldpP~~~~i~~Al~~L~~lgaLd~~~~~g~~~lT~lG~~la~lP  488 (1017)
                      .+.|||+|+||.++||.|++     ||..+.+.|+|||||+.+++..|++.|..||||+..   |  +||.+||.|++||
T Consensus       615 ~t~PEIqRtnL~nvVL~LkS-----LGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~---G--eLTk~GrrMaEfP  684 (902)
T KOG0923|consen  615 MTVPEIQRTNLGNVVLLLKS-----LGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHL---G--ELTKLGRRMAEFP  684 (902)
T ss_pred             CCCcceeeccchhHHHHHHh-----cCcchhcccccCCCCChHHHHHHHHHHHHhhccccc---c--chhhhhhhhhhcC
Confidence            99999999999999999964     334445667999999999999999999999999984   6  6999999999999


Q ss_pred             CChHHHHHHHHccccCchhhHHHHHHHhccCCCcccCCCCchHHHHHhhCcccCCCCccccccccchhhHHHHHHHHHHH
Q 001758          489 LSFDASVLVLKFGEIGMLREGILLGILMDTQPLPILHPFGDDALFAEYTGCYFGGDGNTRLLTGRKEMVIMGNLCAFQFW  568 (1017)
Q Consensus       489 ldp~~~~~ll~~~~~gc~~e~l~Iaa~ls~~~~~~~~P~~~~~~a~~~~~~f~~~~~D~~~~~~~~~~~~l~~l~af~~w  568 (1017)
                      +||++||||+.+..++|..|+++||||||+.+.+|.+|.+++..|+.++..|.++.||           |+.+|++|+.|
T Consensus       685 ~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gD-----------hi~~L~vyn~w  753 (902)
T KOG0923|consen  685 VDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGD-----------HIVLLNVYNQW  753 (902)
T ss_pred             CCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcc-----------hhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999998899999999888776           88899999999


Q ss_pred             HHHHHhhhhhhhhhhhcchhhccccCchhhHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC---CCCcCC
Q 001758          569 QHVFKRLDHLQQVLKFDETKVTASLLPKIEEEWCSLHYLVQSSLHHVSELYEDILNAVHRFRPKFLGTSNG---LPTYYD  645 (1017)
Q Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wC~~~fLs~~~L~~~~~ir~QL~~~l~~~~~~~~~~~~~---~~~~~~  645 (1017)
                      .+                        .+...+||.+||+++++|.++++||.||..++.+..+...+..+.   ..+.+.
T Consensus       754 ~e------------------------s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~  809 (902)
T KOG0923|consen  754 KE------------------------SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAIT  809 (902)
T ss_pred             hh------------------------cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHh
Confidence            76                        466789999999999999999999999999999887766543321   113334


Q ss_pred             Ccchhhhhcc------------------------cCCCCCCCccccccccCCCCccccceecc----------cCccCcC
Q 001758          646 PYEFEHTCLL------------------------NCDPPRDMDPLAADNEHLGPSFEAKKCVA----------VPFVAPN  691 (1017)
Q Consensus       646 ~~~~~h~~~l------------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----------~py~~~~  691 (1017)
                      ..+|.|.|.+                        ..+|.|++||++++|+    ++|+|.|+.          |+||...
T Consensus       810 aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~ts----ke~mr~~~e~e~~Wlie~aphyyk~k  885 (902)
T KOG0923|consen  810 AGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTS----KEFMRQVIEIEEEWLIEVAPHYYKLK  885 (902)
T ss_pred             ccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcCh----HHHHHHHHhhhhhHHHHhchhhhhhh
Confidence            4555555532                        2578999999999999    999999987          9999988


Q ss_pred             ccccchHHH
Q 001758          692 QFQSNNVAE  700 (1017)
Q Consensus       692 ~f~~~e~k~  700 (1017)
                      ++.+..+++
T Consensus       886 dled~~~kk  894 (902)
T KOG0923|consen  886 DLEDATNKK  894 (902)
T ss_pred             hcccccccc
Confidence            887665543

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] Back     alignment and domain information
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] Back     alignment and domain information
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0343 consensus RNA Helicase [RNA processing and modification] Back     alignment and domain information
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0354 consensus DEAD-box like helicase [General function prediction only] Back     alignment and domain information
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>KOG0347 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] Back     alignment and domain information
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>KOG4284 consensus DEAD box protein [Transcription] Back     alignment and domain information
>KOG0346 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0334 consensus RNA helicase [RNA processing and modification] Back     alignment and domain information
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>PF05729 NACHT: NACHT domain Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK10416 signal recognition particle-docking protein FtsY; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif Back     alignment and domain information
>PRK00771 signal recognition particle protein Srp54; Provisional Back     alignment and domain information
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>KOG2340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily Back     alignment and domain information
>TIGR03499 FlhF flagellar biosynthetic protein FlhF Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PHA03333 putative ATPase subunit of terminase; Provisional Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PRK00411 cdc6 cell division control protein 6; Reviewed Back     alignment and domain information
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK07003 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>TIGR01425 SRP54_euk signal recognition particle protein SRP54 Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK12402 replication factor C small subunit 2; Reviewed Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases Back     alignment and domain information
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK07994 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA00729 NTP-binding motif containing protein Back     alignment and domain information
>PRK13851 type IV secretion system protein VirB11; Provisional Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification] Back     alignment and domain information
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] Back     alignment and domain information
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PHA02244 ATPase-like protein Back     alignment and domain information
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK09087 hypothetical protein; Validated Back     alignment and domain information
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK09112 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06645 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK08691 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK08939 primosomal protein DnaI; Reviewed Back     alignment and domain information
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>KOG1803 consensus DNA helicase [Replication, recombination and repair] Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information
>PRK09111 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR02928 orc1/cdc6 family replication initiation protein Back     alignment and domain information
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) Back     alignment and domain information
>PRK10867 signal recognition particle protein; Provisional Back     alignment and domain information
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes Back     alignment and domain information
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK07764 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>CHL00181 cbbX CbbX; Provisional Back     alignment and domain information
>PRK10436 hypothetical protein; Provisional Back     alignment and domain information
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair] Back     alignment and domain information
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PHA02544 44 clamp loader, small subunit; Provisional Back     alignment and domain information
>PRK06620 hypothetical protein; Validated Back     alignment and domain information
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00959 ffh signal recognition particle protein Back     alignment and domain information
>PTZ00293 thymidine kinase; Provisional Back     alignment and domain information
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases Back     alignment and domain information
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX Back     alignment and domain information
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional Back     alignment and domain information
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] Back     alignment and domain information
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] Back     alignment and domain information
>TIGR00678 holB DNA polymerase III, delta' subunit Back     alignment and domain information
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair] Back     alignment and domain information
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>TIGR02533 type_II_gspE general secretory pathway protein E Back     alignment and domain information
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PLN03025 replication factor C subunit; Provisional Back     alignment and domain information
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>KOG4791 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB Back     alignment and domain information
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms] Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13900 type IV secretion system ATPase VirB11; Provisional Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PRK04195 replication factor C large subunit; Provisional Back     alignment and domain information
>PRK00440 rfc replication factor C small subunit; Reviewed Back     alignment and domain information
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A Back     alignment and domain information
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase Back     alignment and domain information
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] Back     alignment and domain information
>PHA03368 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>PRK07133 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK13342 recombination factor protein RarA; Reviewed Back     alignment and domain information
>PRK08451 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit Back     alignment and domain information
>TIGR02858 spore_III_AA stage III sporulation protein AA Back     alignment and domain information
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>CHL00176 ftsH cell division protein; Validated Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis Back     alignment and domain information
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules Back     alignment and domain information
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type Back     alignment and domain information
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB Back     alignment and domain information
>TIGR02688 conserved hypothetical protein TIGR02688 Back     alignment and domain information
>PRK05896 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional Back     alignment and domain information
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export Back     alignment and domain information
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau Back     alignment and domain information
>PRK05563 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms Back     alignment and domain information
>PF13555 AAA_29: P-loop containing region of AAA domain Back     alignment and domain information
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK11823 DNA repair protein RadA; Provisional Back     alignment and domain information
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed Back     alignment and domain information
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA Back     alignment and domain information
>PRK07471 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion Back     alignment and domain information
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed Back     alignment and domain information
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH Back     alignment and domain information
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) Back     alignment and domain information
>PRK07940 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK06067 flagellar accessory protein FlaH; Validated Back     alignment and domain information
>cd01121 Sms Sms (bacterial radA) DNA repair protein Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] Back     alignment and domain information
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03689 pup_AAA proteasome ATPase Back     alignment and domain information
>PRK06647 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK05707 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2 Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>cd01131 PilT Pilus retraction ATPase PilT Back     alignment and domain information
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes Back     alignment and domain information
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain Back     alignment and domain information
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids Back     alignment and domain information
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] Back     alignment and domain information
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily Back     alignment and domain information
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B Back     alignment and domain information
>TIGR00602 rad24 checkpoint protein rad24 Back     alignment and domain information
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>TIGR00763 lon ATP-dependent protease La Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription] Back     alignment and domain information
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A Back     alignment and domain information
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] Back     alignment and domain information
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment Back     alignment and domain information
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) Back     alignment and domain information
>PRK13695 putative NTPase; Provisional Back     alignment and domain information
>TIGR01420 pilT_fam pilus retraction protein PilT Back     alignment and domain information
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes Back     alignment and domain information
>PRK08769 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch Back     alignment and domain information
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional Back     alignment and domain information
>PF12846 AAA_10: AAA-like domain Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B Back     alignment and domain information
>PRK03992 proteasome-activating nucleotidase; Provisional Back     alignment and domain information
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10787 DNA-binding ATP-dependent protease La; Provisional Back     alignment and domain information
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea Back     alignment and domain information
>PRK09354 recA recombinase A; Provisional Back     alignment and domain information
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family Back     alignment and domain information
>CHL00095 clpC Clp protease ATP binding subunit Back     alignment and domain information
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional Back     alignment and domain information
>PRK06305 DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>PHA03372 DNA packaging terminase subunit 1; Provisional Back     alignment and domain information
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>PRK07399 DNA polymerase III subunit delta'; Validated Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB Back     alignment and domain information
>TIGR00767 rho transcription termination factor Rho Back     alignment and domain information
>TIGR02012 tigrfam_recA protein RecA Back     alignment and domain information
>PRK10865 protein disaggregation chaperone; Provisional Back     alignment and domain information
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome Back     alignment and domain information
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF Back     alignment and domain information
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional Back     alignment and domain information
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1017
3kx2_B767 Crystal Structure Of Prp43p In Complex With Adp Len 2e-36
2xau_A773 Crystal Structure Of The Prp43p Deah-Box Rna Helica 2e-36
3llm_A235 Crystal Structure Analysis Of A Rna Helicase Length 3e-17
2cqe_A98 Solution Structure Of The Zinc-Finger Domain In Kia 1e-05
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 Back     alignment and structure 
Iteration: 1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/470 (27%), Positives = 209/470 (44%), Gaps = 62/470 (13%)
Query: 28  VMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLLAENM-----EPILCTQPRRFXXX 82
           V + R++ ++    N++ + VGETG GK++Q+PQF+L + M       + CTQPRR    
Sbjct: 95  VHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAM 154
Query: 83  XXXXXXXXGRNCELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDE-MRDRGLNALKYKVI 141
                     + +LG EVGY I      S ++ + + T G+LL E M D  L+  +Y  I
Sbjct: 155 SVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLS--RYSCI 212
Query: 142 ILDEVHERSVESDXXXXXXXXXXXXXNDLRVVLMSATADITKYRDYFRDL------GRGE 195
           ILDE HER++ +D              DL++++MSAT D  K++ YF D       GR  
Sbjct: 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTY 272
Query: 196 RVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKP 255
            VE+   P       FQR   YL+     +   H        L + +G          + 
Sbjct: 273 PVELYYTPE------FQR--DYLDSAIRTVLQIHATEEAGDILLFLTG----------ED 314
Query: 256 EVHKLIHDLVLHIHKNESDIEKSILVFLPTYYAL--EQQWHLMKPLSSFFKVHILHSSVD 313
           E+   +  + L   +   +     L   P Y +L   QQ  + +P               
Sbjct: 315 EIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN--------- 365
Query: 314 TEQALMAMKICKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVW 373
                      +  RKV+++TNIAE+S+TI  + YV+D   S Q  ++   +++S  +  
Sbjct: 366 ----------GRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSP 415
Query: 374 VSQSQAEQRRGRTGRTCDGQVYRLVT-KSFFGTLEDHECPAIXXXXXXXXXXXICCAESK 432
           +S++ A+QR GR GRT  G+ +RL T ++F   L +   P I               E K
Sbjct: 416 ISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSS-----TVLELK 470
Query: 433 AISDPKVLLQKALDPPYPEVVGDALDLLDHKRALQ---KISPRGRYEPTF 479
            +    ++    +DPP PE +  AL+ L++   L     ++P GR    F
Sbjct: 471 KLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQF 520
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 Back     alignment and structure
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 Back     alignment and structure
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064 Protein Length = 98 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1017
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 2e-81
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 2e-60
1yks_A440 Genome polyprotein [contains: flavivirin protease 1e-47
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 1e-40
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 4e-27
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 6e-19
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-26
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 1e-19
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-25
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 5e-21
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 2e-23
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 8e-22
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 1e-21
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 1e-19
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 4e-14
2rhk_C72 Cleavage and polyadenylation specificity factor su 5e-12
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 1e-11
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 9e-04
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 7e-10
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 2e-05
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 2e-05
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 7e-05
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 2e-04
3b6e_A216 Interferon-induced helicase C domain-containing P; 2e-04
2lhn_A80 Nuclear polyadenylated RNA-binding protein NAB2; n 3e-04
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Back     alignment and structure
 Score =  280 bits (718), Expect = 2e-81
 Identities = 152/523 (29%), Positives = 242/523 (46%), Gaps = 121/523 (23%)

Query: 16  SPFTSPEFS-----------SLPVMSLREKIVEKVLENRVTLIVGETGCGKSSQVPQFLL 64
           +PFT  EF+            LPV + R++ ++    N++ + VGETG GK++Q+PQF+L
Sbjct: 72  NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVL 131

Query: 65  AENMEP-----ILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERSKIVFK 119
            + M       + CTQPRR A ++VA+ VA+  + +LG EVGY I      S ++ + + 
Sbjct: 132 FDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYM 191

Query: 120 TAGVLLDE-MRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSAT 178
           T G+LL E M D  L+  +Y  IILDE HER++ +D+++  +KQ++ ++ DL++++MSAT
Sbjct: 192 TDGMLLREAMEDHDLS--RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSAT 249

Query: 179 ADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSL 238
            D  K++ YF D        +LA+P    RT +               V+         L
Sbjct: 250 LDAEKFQRYFND------APLLAVPG---RT-YP--------------VE---------L 276

Query: 239 RYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES--DIEKSILVFLP-------TYYAL 289
            Y         ++ I+          VL IH  E   D    IL+FL            +
Sbjct: 277 YYTPEFQRDYLDSAIR---------TVLQIHATEEAGD----ILLFLTGEDEIEDAVRKI 323

Query: 290 EQQWHLMKPLSSFFKVHIL--HSSVDTEQALMAMKI---------CKSHRKVILATNIAE 338
             +   +        + +   + S+   Q     +I          +  RKV+++TNIAE
Sbjct: 324 SLEGDQLVREEGCGPLSVYPLYGSLPPHQ---QQRIFEPAPESHNGRPGRKVVISTNIAE 380

Query: 339 SSVTIPKVAYVIDSCRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQVYRLV 398
           +S+TI  + YV+D   S Q  ++   +++S  +  +S++ A+QR GR GRT  G+ +RL 
Sbjct: 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLY 440

Query: 399 TKSFFGT-LEDHECPAILRLSLRLQVLLICCAESKAISDPKVLLQKAL-----------D 446
           T+  F   L +   P ILR +L                   VL  K L           D
Sbjct: 441 TEEAFQKELIEQSYPEILRSNL----------------SSTVLELKKLGIDDLVHFDFMD 484

Query: 447 PPYPEVVGDALDLLDHKRALQKISPRGRYEPTFYGRLLASFSL 489
           PP PE +  AL+ L+    L  +   G    T  GRL + F L
Sbjct: 485 PPAPETMMRALEELN---YLACLDDEGNL--TPLGRLASQFPL 522
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70 Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1017
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 1e-29
d1yksa2299 c.37.1.14 (A:325-623) YFV helicase domain {Yellow 2e-24
d1a1va1136 c.37.1.14 (A:190-325) HCV helicase domain {Human h 1e-20
d1yksa1140 c.37.1.14 (A:185-324) YFV helicase domain {Yellow 3e-11
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 9e-05
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-04
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 2e-04
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 5e-04
d2cqea156 g.66.1.1 (A:458-513) Zinc finger CCCH domain-conta 0.001
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 0.002
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 0.002
d2fz4a1206 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc 0.004
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

 Score =  117 bits (294), Expect = 1e-29
 Identities = 52/377 (13%), Positives = 102/377 (27%), Gaps = 81/377 (21%)

Query: 37  EKVLENRVTLIVGETGCGKSSQVPQFLLAENMEP---ILCTQPRRFAVVAVAKMVAKGRN 93
           +   + R+T++    G GK+ +    ++ E ++     L   P R     + + +     
Sbjct: 4   DIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPI 63

Query: 94  CELGGEVGYHIGHSKHLSERSKIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVES 153
                 +       +       +           +    +    Y +II+DE H     S
Sbjct: 64  RYQTPAIRAEHTGREI------VDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPAS 116

Query: 154 DLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRGERVEVLAIPSTNQRTIFQR 213
                 +   +        + M+AT   ++      +           I    +    + 
Sbjct: 117 IAARGYISTRVEMGE-AAGIFMTATPPGSRDPFPQSN---------APIMDEEREIPERS 166

Query: 214 RVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNES 273
             S  E VT+  G                                     +         
Sbjct: 167 WNSGHEWVTDFKG-----------------------------------KTVWFVPSIKA- 190

Query: 274 DIEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHRKVILA 333
                           +    L K   +  KV  L       +    +K   +    ++ 
Sbjct: 191 --------------GNDIAACLRK---NGKKVIQLSRKTFDSE---YIKTRTNDWDFVVT 230

Query: 334 TNIAESSVTIPKVAYVIDS--CRSLQVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCD 391
           T+I+E          VID   C    +  D   ++  A  + V+ S A QRRGR GR   
Sbjct: 231 TDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289

Query: 392 GQVYRLVTKSFFGTLED 408
            +  + +       LE+
Sbjct: 290 NENDQYIYMG--EPLEN 304
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1017
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 100.0
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.85
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 99.84
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.83
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.83
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 99.82
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.82
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 99.82
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 99.82
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.82
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.81
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.81
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.8
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.8
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.8
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.8
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.8
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 99.79
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.79
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.78
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.77
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.76
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.76
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 99.75
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.75
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.74
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.69
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.67
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.67
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.65
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.63
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.6
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.58
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.53
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.51
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.45
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.4
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.08
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.02
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.95
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.93
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.72
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 98.58
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.19
d1okkd2207 GTPase domain of the signal recognition particle r 98.17
d2qy9a2211 GTPase domain of the signal recognition particle r 98.1
d1vmaa2213 GTPase domain of the signal recognition particle r 98.03
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 97.9
d1ls1a2207 GTPase domain of the signal sequence recognition p 97.87
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 97.82
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 97.7
d1j8yf2211 GTPase domain of the signal sequence recognition p 97.7
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 97.28
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 97.26
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 97.23
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 97.16
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 97.08
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 96.94
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 96.94
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 96.94
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.91
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.82
d1rgoa136 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.81
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 96.79
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 96.78
d2b8ta1139 Thymidine kinase, TK1, N-terminal domain {Ureaplas 96.74
d1ye8a1178 Hypothetical kinase-like protein Aq_1292 {Aquifex 96.68
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 96.66
d1sxjb2224 Replication factor C4 {Baker's yeast (Saccharomyce 96.53
d1lv7a_256 AAA domain of cell division protein FtsH {Escheric 96.49
d1d2na_246 Hexamerization domain of N-ethylmalemide-sensitive 96.48
d2fnaa2283 Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ 96.46
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 96.42
d1iqpa2231 Replication factor C {Archaeon Pyrococcus furiosus 96.32
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 96.29
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 96.27
d1e32a2258 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 96.26
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 96.22
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 96.13
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 96.12
d2cqea229 Zinc finger CCCH domain-containing protein C19orf7 96.08
d1fnna2276 CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T 96.0
d1um8a_364 ClpX {Helicobacter pylori [TaxId: 210]} 95.99
d1xx6a1141 Thymidine kinase, TK1, N-terminal domain {Clostrid 95.59
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 95.46
d1xbta1133 Thymidine kinase, TK1, N-terminal domain {Human (H 95.4
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 95.37
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 95.1
d1r7ra3265 Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu 94.91
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 94.89
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 94.83
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 94.52
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 94.45
d1qvra2387 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 94.33
d1sgwa_200 Putative ABC transporter PF0895 {Pyrococcus furios 94.3
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 94.22
d1wb9a2234 DNA repair protein MutS, the C-terminal domain {Es 94.11
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 93.95
d1ny5a2247 Transcriptional activator sigm54 (NtrC1), C-termin 93.91
d1ly1a_152 Polynucleotide kinase, kinase domain {Bacteriophag 93.89
d1r6bx3315 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 93.71
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 93.66
d1w36b1485 Exodeoxyribonuclease V beta chain (RecB), N-termin 93.51
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 93.35
d1qvra3315 ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 93.24
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 93.23
d1w44a_321 NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} 93.19
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 93.15
d1gvnb_273 Plasmid maintenance system epsilon/zeta, toxin zet 93.1
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 93.09
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 93.03
d1sxjd2237 Replication factor C2 {Baker's yeast (Saccharomyce 92.97
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 92.82
d1pzna2254 DNA repair protein Rad51, catalytic domain {Archae 92.71
d1in4a2238 Holliday junction helicase RuvB {Thermotoga mariti 92.62
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 92.61
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 92.55
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 92.41
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 92.26
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 92.21
d1nija1222 Hypothetical protein YjiA, N-terminal domain {Esch 92.19
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 92.15
d1e9ra_433 Bacterial conjugative coupling protein TrwB {Esche 92.12
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 92.03
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 91.94
d1n0wa_242 DNA repair protein Rad51, catalytic domain {Human 91.9
d1yj5a2172 5' polynucleotide kinase-3' phosphatase, C-termina 91.89
d1ixsb2239 Holliday junction helicase RuvB {Thermus thermophi 91.87
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 91.86
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 91.86
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 91.8
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 91.79
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 91.66
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 91.33
d1tf7a2242 Circadian clock protein KaiC {Synechococcus sp. st 91.33
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 91.27
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 91.17
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 91.13
d2pmka1241 Haemolysin B ATP-binding protein {Escherichia coli 91.11
d1jj7a_251 Peptide transporter Tap1, C-terminal ABC domain {H 91.08
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 91.08
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 91.05
d1szpa2251 DNA repair protein Rad51, catalytic domain {Baker' 91.05
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 90.98
d1cr2a_277 Gene 4 protein (g4p, DNA primase), helicase domain 90.91
d1r0wa_281 Cystic fibrosis transmembrane conductance regulato 90.87
d2hyda1255 Putative multidrug export ATP-binding/permease pro 90.81
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 90.76
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 90.61
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 90.6
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 90.53
d3b60a1253 Multidrug resistance ABC transporter MsbA, C-termi 90.44
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 90.4
d1rz3a_198 Hypothetical protein rbstp0775 {Bacillus stearothe 90.28
d1ewqa2224 DNA repair protein MutS, the C-terminal domain {Th 90.23
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 90.14
d1yrba1244 ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss 90.04
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 90.02
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 89.78
d1l2ta_230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 89.76
d2i1qa2258 DNA repair protein Rad51, catalytic domain {Archae 89.63
d1kgda_178 Guanylate kinase-like domain of Cask {Human (Homo 89.58
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 89.41
d1mv5a_242 Multidrug resistance ABC transporter LmrA, C-termi 89.4
d1v5wa_258 Meiotic recombination protein DMC1/LIM15 homolog { 89.37
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 89.04
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 88.94
d1w5sa2287 CDC6-like protein APE0152, N-terminal domain {Aero 88.78
d3dhwc1240 Methionine import ATP-binding protein MetN {Escher 88.31
d2awna2232 Maltose transport protein MalK, N-terminal domain 88.29
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 88.28
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 88.13
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 88.03
d1g2912240 Maltose transport protein MalK, N-terminal domain 87.97
d1tf7a1242 Circadian clock protein KaiC {Synechococcus sp. st 87.69
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 87.55
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 87.44
d1uj2a_213 Uridine-cytidine kinase 2 {Human (Homo sapiens) [T 86.9
d2vp4a1197 Deoxyribonucleoside kinase {Fruit fly (Drosophila 86.82
d1nlfa_274 Hexameric replicative helicase repA {Escherichia c 86.65
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 86.6
d1g8pa_333 ATPase subunit of magnesium chelatase, BchI {Rhodo 86.47
d1v43a3239 Hypothetical protein PH0022, N-terminal domain {Py 86.32
d1w1wa_427 Smc head domain {Baker's yeast (Saccharomyces cere 86.08
d3d31a2229 Sulfate/molybdate ABC transporter, ATP-binding pro 85.94
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 85.1
g1xew.1329 Smc head domain {Pyrococcus furiosus [TaxId: 2261] 84.64
d1p5zb_241 Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 84.56
d2p6ra185 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 84.38
d1htwa_158 Hypothetical protein HI0065 {Haemophilus influenza 84.36
d1gsia_208 Thymidylate kinase {Mycobacterium tuberculosis [Ta 84.25
d1oxxk2242 Glucose transport protein GlcV, N-terminal domain 83.98
d1u0la2225 Probable GTPase EngC (YjeQ), C-terminal domain {Th 83.97
d2ocpa1241 Deoxyguanosine kinase {Human (Homo sapiens) [TaxId 83.91
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 83.63
d1ji0a_240 Branched chain aminoacid ABC transporter {Thermoto 83.47
d1b0ua_258 ATP-binding subunit of the histidine permease {Sal 83.24
d1uf9a_191 Dephospho-CoA kinase {Thermus thermophilus [TaxId: 83.13
d2fc6a137 Target of EGR1 protein 1, TOE1 {Human (Homo sapien 82.57
d1l7vc_231 ABC transporter involved in vitamin B12 uptake, Bt 82.42
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 81.63
d2onka1240 Molybdate/tungstate import ATP-binding protein Wtp 81.22
d2fh5b1207 Signal recognition particle receptor beta-subunit 81.06
d1vhta_208 Dephospho-CoA kinase {Escherichia coli [TaxId: 562 80.72
d1jjva_205 Dephospho-CoA kinase {Haemophilus influenzae [TaxI 80.28
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=100.00  E-value=9e-39  Score=250.23  Aligned_cols=291  Identities=16%  Similarity=0.132  Sum_probs=198.4

Q ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             99829919999089981869999999854---998599956389999999999994318846972267420454568997
Q 001758           38 KVLENRVTLIVGETGCGKSSQVPQFLLAE---NMEPILCTQPRRFAVVAVAKMVAKGRNCELGGEVGYHIGHSKHLSERS  114 (1017)
Q Consensus        38 ~i~~~~~vII~apTGSGKTtqip~~lle~---~~~~IivtqPrrlaa~s~a~rva~e~~~~lg~~VGy~v~~~~~~~~~t  114 (1017)
                      +++++++++|.||||||||+++...+++.   ...+++++.|++.+|.++++++.....    .....  ..+......+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~----~~~~~--~~~~~~~~~~   78 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPI----RYQTP--AIRAEHTGRE   78 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCC----BCCC----------CCC
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCC----CEEEE--EEEECCCCCC
T ss_conf             86469949999799997879999999999872699899982389999999999854875----21113--7850125765


Q ss_pred             CEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCC
Q ss_conf             39998789999999805988567508998053212333107999999998518996199972126947899998642998
Q 001758          115 KIVFKTAGVLLDEMRDRGLNALKYKVIILDEVHERSVESDLVLVCVKQLLLKKNDLRVVLMSATADITKYRDYFRDLGRG  194 (1017)
Q Consensus       115 ~Iiv~T~g~Ll~~l~~~~l~l~~~s~IIIDEaHER~~~~D~ll~~Lk~ll~~r~dlkiIlmSATld~~~~~~~f~~~~~~  194 (1017)
                      .|+++|++.|...+..+. .+.++++|||||+|+.........++++.... +++.++++||||++.....  +  ....
T Consensus        79 ~i~~~t~~~l~~~~~~~~-~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~-~~~~~~v~~SAT~~~~~~~--~--~~~~  152 (305)
T d2bmfa2          79 IVDLMCHATFTMRLLSPI-RVPNYNLIIMDEAHFTDPASIAARGYISTRVE-MGEAAGIFMTATPPGSRDP--F--PQSN  152 (305)
T ss_dssp             SEEEEEHHHHHHHHTSSS-CCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS--S--CCCS
T ss_pred             CCCCCCCHHHHHHHHCCC-CCCCEEEEEEEEEEECCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCEEE--E--CCCC
T ss_conf             301377489999984585-31540089853011125205788899998416-6531389941578764334--0--2347


Q ss_pred             CEEEEEEECCCCCCEEEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             41489971688843033437412777888731577885211112346999997532246555899999999999840888
Q 001758          195 ERVEVLAIPSTNQRTIFQRRVSYLEQVTELLGVDHGMTSELSSLRYCSGPSPSMANAEIKPEVHKLIHDLVLHIHKNESD  274 (1017)
Q Consensus       195 ~~v~v~~~p~~~~~~~~~v~i~yl~~~~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~li~~lv~~i~~~~~~  274 (1017)
                      .+  +.....           .                          .  +.......           ...+.  .. 
T Consensus       153 ~~--~~~~~~-----------~--------------------------~--~~~~~~~~-----------~~~~~--~~-  177 (305)
T d2bmfa2         153 AP--IMDEER-----------E--------------------------I--PERSWNSG-----------HEWVT--DF-  177 (305)
T ss_dssp             SC--EEEEEC-----------C--------------------------C--CCSCCSSC-----------CHHHH--SS-
T ss_pred             CC--CEEEEE-----------E--------------------------C--CHHHHHHH-----------HHHHH--HH-
T ss_conf             86--127998-----------6--------------------------1--58889999-----------99999--60-


Q ss_pred             CCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCEEEEEECC
Q ss_conf             798789990889999999998248799958999639999999999987205996-8999847431254579911999388
Q 001758          275 IEKSILVFLPTYYALEQQWHLMKPLSSFFKVHILHSSVDTEQALMAMKICKSHR-KVILATNIAESSVTIPKVAYVIDSC  353 (1017)
Q Consensus       275 ~~g~ILVFlps~~~ie~l~~~L~~~~~~~~v~~lHs~l~~~~r~~v~~~f~~~r-kIIVATniaEtGItIP~V~~VIDsG  353 (1017)
                       ++++|||++++++++.++..|...  ++.+..+|+++....+    ..++++. ++++||+++++|+|+ +++.|||+|
T Consensus       178 -~~~~lvf~~~~~~~~~l~~~L~~~--~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~  249 (305)
T d2bmfa2         178 -KGKTVWFVPSIKAGNDIAACLRKN--GKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMGANF-KAERVIDPR  249 (305)
T ss_dssp             -CSCEEEECSCHHHHHHHHHHHHHH--TCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTTCCC-CCSEEEECC
T ss_pred             -CCCEEEEECCHHHHHHHHHHHHHC--CCCEEEECCCCHHHHH----HHHHCCCHHHHHHHHHHHHCCCC-CCCEEEECC
T ss_conf             -799899963099999999999867--9989995783847777----54310001135556788725788-840899758


Q ss_pred             CCC--EEEECCCCCCCCCCEEECCHHHHHHHCCCCCCCCCCC-EEEEECHHHH
Q ss_conf             631--1562478886544224318832998549989789981-9997331013
Q 001758          354 RSL--QVFWDVNRKIDSAELVWVSQSQAEQRRGRTGRTCDGQ-VYRLVTKSFF  403 (1017)
Q Consensus       354 ~~k--~~~yd~~~~~~~l~~~~ISkasa~QRaGRAGR~~~G~-cyrLys~~~~  403 (1017)
                      ...  ...||++.+...+...|+|.+++.||+|||||.+.|. ...+|..+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~~~  302 (305)
T d2bmfa2         250 RCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPL  302 (305)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSCCC
T ss_pred             CCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCC
T ss_conf             74146573389876388044569988983241186828999269999899888
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Back     information, alignment and structure
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Back     information, alignment and structure
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure