Citrus Sinensis ID: 001763
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1017 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SS83 | 1028 | Pentatricopeptide repeat- | yes | no | 0.960 | 0.950 | 0.579 | 0.0 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.844 | 0.807 | 0.331 | 1e-142 | |
| Q9FWA6 | 903 | Pentatricopeptide repeat- | no | no | 0.821 | 0.924 | 0.314 | 1e-132 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.798 | 0.816 | 0.332 | 1e-129 | |
| Q9LFI1 | 768 | Pentatricopeptide repeat- | no | no | 0.703 | 0.930 | 0.350 | 1e-126 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.721 | 0.764 | 0.336 | 1e-125 | |
| Q9STE1 | 857 | Pentatricopeptide repeat- | no | no | 0.725 | 0.861 | 0.325 | 1e-122 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.717 | 0.841 | 0.354 | 1e-122 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.707 | 0.808 | 0.336 | 1e-121 | |
| Q9S7F4 | 825 | Putative pentatricopeptid | no | no | 0.643 | 0.792 | 0.353 | 1e-121 |
| >sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/980 (57%), Positives = 736/980 (75%), Gaps = 3/980 (0%)
Query: 37 NPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITSRIIHAQSLKFGFGSKGLLGNAI 96
+ I+ LLE CL QCK K+R +FD QRL A + +H++SL G S+G LGNAI
Sbjct: 42 DQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAI 101
Query: 97 VDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNG 156
VDLYAKC + AEK FD LE +D+ AWNS+LSMYS G V +SF L PN
Sbjct: 102 VDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK 160
Query: 157 FTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDG 216
FTF+IVLS C++ +V +GRQ+HC +I++G E +S+C GAL+DMYAK + +SDARRVF+
Sbjct: 161 FTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEW 220
Query: 217 AVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEA 276
VD +TV WT + +GYV+AGLPE A +FE+M G PD +AFVTVIN LG+L +A
Sbjct: 221 IVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDA 280
Query: 277 RELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSL 336
R LF +M +P+VVAWNVMISGH KRG + A+ YF MRK+ VKS+RSTLGSVLS I +
Sbjct: 281 RLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIV 340
Query: 337 AALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALL 396
A LD GL+VHAEAIK GL SN+YV SSL++MY+KCEKME+A KVF++L+E+N V WNA++
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400
Query: 397 GGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLA 456
GY+ N +H+V++LF MKSSG++ DDFT+TS+LS+CA LEMG Q H++IIK KLA
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLA 460
Query: 457 TNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRM 516
NL+VGNALVDMYAK ALE+AR+ FER+ ++DNV+WN II YVQ+ + EAF++F+RM
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRM 520
Query: 517 NLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGF 576
NL GIV D AS L AC ++ GL QG+QVHC SVK L+ +++ GSSLIDMY KCG
Sbjct: 521 NLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD-RDLHTGSSLIDMYSKCGI 579
Query: 577 IGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDAC 636
I A KV S +P+ +VVSMNALIAGY+QNN+E+AVVL++ M T G++P++ITF ++++AC
Sbjct: 580 IKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639
Query: 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVL 696
P LGTQ H I K+G + ++L I+LL MYMNS+ T+A LF+E +PKS VL
Sbjct: 640 HKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVL 699
Query: 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756
WT ++SGH+QN EAL FY+EMR VLPDQATFV+VLR C+VLSSLR+G IHSLIF
Sbjct: 700 WTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIF 759
Query: 757 HTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDAL 816
H +DLDE+T + LIDMYAKCGD+K S+QVFDEM R+ V+SWNS+I G+AKNGYAEDAL
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDAL 819
Query: 817 KVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876
K+F M+++ MPD++TFLGVLTACSHAG+VS+GR+IFE M+ +GI+ RVDH ACMVDL
Sbjct: 820 KIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDL 879
Query: 877 LGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPY 936
LGRWG+L+EA++FIE +PD+R+W++LLGAC +H DDIRG ++A+KLIELEP+N S Y
Sbjct: 880 LGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAY 939
Query: 937 VQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRIC 996
V LSNIYA+ G W + N LR+ MR++GVKK PG SWI + Q T+ F AGD SH +I
Sbjct: 940 VLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIE 999
Query: 997 AVLEDLTASMEKESYF-PEI 1015
LEDL M+ ++ P+I
Sbjct: 1000 MFLEDLYDLMKDDAVVNPDI 1019
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/901 (33%), Positives = 474/901 (52%), Gaps = 42/901 (4%)
Query: 149 NRGGVPNGFTFAIVLSACSKSM-DVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNV 207
NRG PN T +L C K+ + GR+LH +++LG +S+ L D Y ++
Sbjct: 77 NRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDL 136
Query: 208 SDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVC 267
A +VFD + +W MI L F LF +M+ P++ F V+ C
Sbjct: 137 YGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196
Query: 268 ------FNL------------------------------GRLDEARELFAQMQNPNVVAW 291
F++ G +D AR +F ++ + +W
Sbjct: 197 RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSW 256
Query: 292 NVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIK 351
MISG +K +AEA+ F M G+ + SVLS + +L+ G +H +K
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316
Query: 352 QGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDL 411
G S+ YV ++L+++Y + SA+ +F ++ +R+AV +N L+ G SQ Y + ++L
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376
Query: 412 FFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAK 471
F M G D T S++ +C+ L G+QLHA K A+N + AL+++YAK
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436
Query: 472 SRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASI 531
+E A F + ++ V WN ++V Y D+ +F +FR+M + IVP+ + SI
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496
Query: 532 LSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRN 591
L C + L GEQ+H +KT+ + N YV S LIDMY K G + A +L ++
Sbjct: 497 LKTCIRLGDLELGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKD 555
Query: 592 VVSMNALIAGYAQNNVED-AVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHC 650
VVS +IAGY Q N +D A+ +R M G+ +++ T+ + AC G G QIH
Sbjct: 556 VVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHA 615
Query: 651 LIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSN 710
G D F + AL+++Y + ++ L F E + W A++SG Q+ +N
Sbjct: 616 QACVSGFSSDLPFQN-ALVTLYSRCGKIEESYLAF-EQTEAGDNIAWNALVSGFQQSGNN 673
Query: 711 YEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSAL 770
EAL + M + + TF S ++A + ++++ G ++H++I TGYD + +AL
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD 830
I MYAKCG + + + F E++ +N V SWN++I ++K+G+ +AL F +M + P+
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEV-SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPN 792
Query: 831 DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFI 890
VT +GVL+ACSH G V +G FE+M S +G+ P+ +H C+VD+L R G L A+EFI
Sbjct: 793 HVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFI 852
Query: 891 EQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWN 950
+++ +PD+ +W TLL AC VH++ G AA L+ELEPE+ + YV LSN+YA W+
Sbjct: 853 QEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWD 912
Query: 951 EVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKES 1010
+ R++M+EKGVKK PG SWI + + + F GD +HP AD I +DLT +
Sbjct: 913 ARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIG 972
Query: 1011 Y 1011
Y
Sbjct: 973 Y 973
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 473 bits (1218), Expect = e-132, Method: Compositional matrix adjust.
Identities = 283/900 (31%), Positives = 464/900 (51%), Gaps = 65/900 (7%)
Query: 119 RDILAWNSILSMYSKRGSFENV--FKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGR 176
R ++++N L+ ++ S+ V F F N+ + F+ V C+K + G+
Sbjct: 12 RSVVSFNRCLT---EKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGK 68
Query: 177 QLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAG 236
Q H H+I GF ++F L+ +Y + A VFD D VSW MI GY ++
Sbjct: 69 QAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSN 128
Query: 237 LPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMIS 296
++F+ A F M +VV+WN M+S
Sbjct: 129 ------DMFK-----------------------------ANSFFNMMPVRDVVSWNSMLS 153
Query: 297 GHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYS 356
G+ + G +++ F M + G++ T +L S L G+ +H ++ G +
Sbjct: 154 GYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDT 213
Query: 357 NVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMK 416
+V AS+L++MYAK ++ + +VF + E+N+V W+A++ G QN + F M+
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273
Query: 417 SSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALE 476
Y S+L SCA L L +G QLHA +K+ A + V A +DMYAK ++
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333
Query: 477 EARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536
+A+ F+ +N + S+NA+I GY QE F+A +F R+ G+ D++S + + ACA
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Query: 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMN 596
++GL +G Q++ ++K+SL + ++ V ++ IDMY KC + A +V M +R+ VS N
Sbjct: 394 LVKGLSEGLQIYGLAIKSSL-SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWN 452
Query: 597 ALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK 655
A+IA + QN + + L+ M + P++ TF S+L AC G G +IH IVK
Sbjct: 453 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTGG-SLGYGMEIHSSIVKS 511
Query: 656 GLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF---PNPKST----------------VL 696
G+ + + +L+ MY +A + + F N T V
Sbjct: 512 GMA-SNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVS 570
Query: 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756
W ++ISG+ + + +A + M + PD+ T+ +VL CA L+S G +IH+ +
Sbjct: 571 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVI 630
Query: 757 HTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDAL 816
D S L+DMY+KCGD+ S +F++ R++V +WN+MI G+A +G E+A+
Sbjct: 631 KKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFV-TWNAMICGYAHHGKGEEAI 689
Query: 817 KVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876
++F M P+ VTF+ +L AC+H G + +G + F M +G+ P++ H + MVD+
Sbjct: 690 QLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDI 749
Query: 877 LGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR-GRLAAKKLIELEPENPSP 935
LG+ G +K A E I ++ FE D IW TLLG C +HR+++ A L+ L+P++ S
Sbjct: 750 LGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSA 809
Query: 936 YVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRI 995
Y LSN+YA G W +V+ LRR MR +KK PGCSW+ L + F+ GD +HP + I
Sbjct: 810 YTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEI 869
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 464 bits (1193), Expect = e-129, Method: Compositional matrix adjust.
Identities = 290/871 (33%), Positives = 459/871 (52%), Gaps = 59/871 (6%)
Query: 197 LIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPD 256
LI+ Y + + AR+VFD + VSW +++GY + G + A M+K G +
Sbjct: 42 LINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSN 101
Query: 257 QVAFVTVINVCFNLGRLDE--AREL----------------------------------- 279
Q AFV+V+ C +G + R++
Sbjct: 102 QYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALC 161
Query: 280 -FAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAA 338
F ++ N V+WN +IS +++ G A F M+ G + + T GS+++ SL
Sbjct: 162 AFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTE 221
Query: 339 LDFGLI--VHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALL 396
D L+ + K GL ++++V S L++ +AK + A+KVF+ ++ RNAV N L+
Sbjct: 222 PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLM 281
Query: 397 GGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEY-------LEMGRQLHAV 449
G + + E LF M S +Y +LSS EY L+ GR++H
Sbjct: 282 VGLVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSSFP--EYSLAEEVGLKKGREVHGH 338
Query: 450 IIKNKLATNLY-VGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFE 508
+I L + +GN LV+MYAK ++ +AR+ F + ++D+VSWN++I G Q G E
Sbjct: 339 VITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIE 398
Query: 509 AFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLI 568
A ++ M I+P + S LS+CA+++ G+Q+H S+K ++ N+ V ++L+
Sbjct: 399 AVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDL-NVSVSNALM 457
Query: 569 DMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYA--QNNVEDAVVLYRGMQTEGLSPND 626
+Y + G++ K+ S MP+ + VS N++I A + ++ +AVV + Q G N
Sbjct: 458 TLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNR 517
Query: 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT 686
ITF+S+L A LG QIH L +K + D+ AL++ Y +F+
Sbjct: 518 ITFSSVLSAVSSLSFGELGKQIHGLALKNNIA-DEATTENALIACYGKCGEMDGCEKIFS 576
Query: 687 EFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLR 746
+ V W ++ISG+ N+ +AL M D + +VL A A +++L
Sbjct: 577 RMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLE 636
Query: 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGF 806
G E+H+ + D + GSAL+DMY+KCG + + + F+ M RN SWNSMI G+
Sbjct: 637 RGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRN-SYSWNSMISGY 695
Query: 807 AKNGYAEDALKVFHEMK-ETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP 865
A++G E+ALK+F MK + Q PD VTF+GVL+ACSHAG + EG + FE+M +G+ P
Sbjct: 696 ARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAP 755
Query: 866 RVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGAC--GVHRDDIRGRLAAK 923
R++H +CM D+LGR G L + E+FIE++ +P+ IW T+LGAC R G+ AA+
Sbjct: 756 RIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAE 815
Query: 924 KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFV 983
L +LEPEN YV L N+YAA G W ++ R++M++ VKK G SW+ + + FV
Sbjct: 816 MLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFV 875
Query: 984 AGDTSHPNADRICAVLEDLTASMEKESYFPE 1014
AGD SHP+AD I L++L M Y P+
Sbjct: 876 AGDKSHPDADVIYKKLKELNRKMRDAGYVPQ 906
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/721 (35%), Positives = 397/721 (55%), Gaps = 6/721 (0%)
Query: 292 NVMISGHAKRGYDAEAVNYFKRMRK-AGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAI 350
N I+ K + EA+ F +K + K T S++ SS +L G +H +
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 351 KQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVD 410
+ + + +++MY KC + A++VFD + ERN V + +++ GYSQN E +
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154
Query: 411 LFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYA 470
L+ M D F + SI+ +CA + +G+QLHA +IK + +++L NAL+ MY
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214
Query: 471 KSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIV-PDDVSSA 529
+ + +A + F I +D +SW++II G+ Q G FEA + + M G+ P++
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274
Query: 530 SILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ 589
S L AC+++ G Q+H +K+ L N G SL DMY +CGF+ +A +V + +
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSEL-AGNAIAGCSLCDMYARCGFLNSARRVFDQIER 333
Query: 590 RNVVSMNALIAGYAQNNVED-AVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQI 648
+ S N +IAG A N D AV ++ M++ G P+ I+ SLL A P G QI
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Query: 649 HCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQND 708
H I+K G L D + +LL+MY LF +F N +V W +++ Q++
Sbjct: 394 HSYIIKWGFLADLTVCN-SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHE 452
Query: 709 SNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS 768
E L ++ M PD T ++LR C +SSL+ G ++H TG ++ +
Sbjct: 453 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKN 512
Query: 769 ALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAM 828
LIDMYAKCG + ++ ++FD M R+ V+SW+++IVG+A++G+ E+AL +F EMK
Sbjct: 513 GLIDMYAKCGSLGQARRIFDSMDNRD-VVSWSTLIVGYAQSGFGEEALILFKEMKSAGIE 571
Query: 829 PDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEE 888
P+ VTF+GVLTACSH G V EG +++ TM + HGI P +HC+C+VDLL R G L EAE
Sbjct: 572 PNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAER 631
Query: 889 FIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948
FI+++ EPD +W TLL AC + + AA+ +++++P N + +V L +++A+ GN
Sbjct: 632 FIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGN 691
Query: 949 WNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEK 1008
W LR M++ VKK PG SWI + + F A D HP D I VL ++ + M
Sbjct: 692 WENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQMLD 751
Query: 1009 E 1009
E
Sbjct: 752 E 752
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/742 (33%), Positives = 418/742 (56%), Gaps = 8/742 (1%)
Query: 271 GRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVL 330
G LD+A ++F +M + AWN MI + G A A+ + MR GV S+ ++L
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALL 189
Query: 331 SGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER-NA 389
+ L + G +H+ +K G +S ++ ++L++MYAK + + +A+++FD E+ +A
Sbjct: 190 KACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDA 249
Query: 390 VLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAV 449
VLWN++L YS + + E ++LF M +G + +T S L++C Y ++G+++HA
Sbjct: 250 VLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHAS 309
Query: 450 IIKNKL-ATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFE 508
++K+ ++ LYV NAL+ MY + + +A + ++ N D V+WN++I GYVQ E
Sbjct: 310 VLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKE 369
Query: 509 AFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLI 568
A F M G D+VS SI++A + L G ++H + +K + SN+ VG++LI
Sbjct: 370 ALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLI 428
Query: 569 DMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDI 627
DMY KC + M ++++S +IAGYAQN+ +A+ L+R + + + +++
Sbjct: 429 DMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEM 488
Query: 628 TFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687
S+L A + +IHC I++KGLL D + L+ +Y + A +F E
Sbjct: 489 ILGSILRASSVLKSMLIVKEIHCHILRKGLL--DTVIQNELVDVYGKCRNMGYATRVF-E 545
Query: 688 FPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRD 747
K V WT++IS A N + EA+ +R M + D + +L A A LS+L
Sbjct: 546 SIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNK 605
Query: 748 GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFA 807
G EIH + G+ L+ A++DMYA CGD++ + VFD + ER ++ + SMI +
Sbjct: 606 GREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI-ERKGLLQYTSMINAYG 664
Query: 808 KNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV 867
+G + A+++F +M+ PD ++FL +L ACSHAG + EGR + M + ++P
Sbjct: 665 MHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWP 724
Query: 868 DHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIE 927
+H C+VD+LGR + EA EF++ + EP + +W LL AC H + G +AA++L+E
Sbjct: 725 EHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLE 784
Query: 928 LEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDT 987
LEP+NP V +SN++A G WN+V +R +M+ G++K PGCSWI + + F A D
Sbjct: 785 LEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDK 844
Query: 988 SHPNADRICAVLEDLTASMEKE 1009
SHP + I L ++T +E+E
Sbjct: 845 SHPESKEIYEKLSEVTRKLERE 866
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 244/750 (32%), Positives = 412/750 (54%), Gaps = 12/750 (1%)
Query: 271 GRLDEARELFAQM--QNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGS 328
G + ++F ++ + ++ WN +IS + G +A+ ++ +M GV ST
Sbjct: 84 GSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPC 143
Query: 329 VLSGISSLAALDFGLIVHAEAIKQ-GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER 387
++ +L G+ ++ + G+ N +VASSLI Y + K++ K+FD + ++
Sbjct: 144 LVKACVALKNFK-GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQK 202
Query: 388 NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLH 447
+ V+WN +L GY++ V+ F M+ + T+ +LS CA +++G QLH
Sbjct: 203 DCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLH 262
Query: 448 AVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVF 507
+++ + + + N+L+ MY+K ++A K F + D V+WN +I GYVQ G +
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLME 322
Query: 508 EAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSL 567
E+ F M G++PD ++ +S+L + + + L +Q+HC+ ++ S+ +I++ S+L
Sbjct: 323 ESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL-DIFLTSAL 381
Query: 568 IDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND 626
ID Y KC + A + S +VV A+I+GY N + D++ ++R + +SPN+
Sbjct: 382 IDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNE 441
Query: 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDF-LHIALLSMYMNSKRNTDARLLF 685
IT S+L LG ++H I+KKG FD+ + A++ MY R A +F
Sbjct: 442 ITLVSILPVIGILLALKLGRELHGFIIKKG--FDNRCNIGCAVIDMYAKCGRMNLAYEIF 499
Query: 686 TEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSL 745
+ + V W ++I+ AQ+D+ A+ +R+M + D + + L ACA L S
Sbjct: 500 ERL-SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSE 558
Query: 746 RDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVG 805
G IH + D + S LIDMYAKCG++K + VF M E+N ++SWNS+I
Sbjct: 559 SFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN-IVSWNSIIAA 617
Query: 806 FAKNGYAEDALKVFHEMKETQAM-PDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQ 864
+G +D+L +FHEM E + PD +TFL ++++C H G V EG + F +M +GIQ
Sbjct: 618 CGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQ 677
Query: 865 PRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKK 924
P+ +H AC+VDL GR G L EA E ++ + F PD+ +W TLLGAC +H++ +A+ K
Sbjct: 678 PQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSK 737
Query: 925 LIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVA 984
L++L+P N YV +SN +A W V +R M+E+ V+K PG SWI + + T+ FV+
Sbjct: 738 LMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVS 797
Query: 985 GDTSHPNADRICAVLEDLTASMEKESYFPE 1014
GD +HP + I ++L L + E Y P+
Sbjct: 798 GDVNHPESSHIYSLLNSLLGELRLEGYIPQ 827
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 266/751 (35%), Positives = 413/751 (54%), Gaps = 21/751 (2%)
Query: 272 RLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLS 331
RL A LF + + ++ ++ G ++ G EA F + + G++ S SVL
Sbjct: 42 RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101
Query: 332 GISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVL 391
++L FG +H + IK G +V V +SL++ Y K + +KVFD + ERN V
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161
Query: 392 WNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVII 451
W L+ GY++N EV+ LF M++ G + FT+ + L A G Q+H V++
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221
Query: 452 KNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFN 511
KN L + V N+L+++Y K + +AR F++ + + V+WN++I GY G EA
Sbjct: 222 KNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALG 281
Query: 512 MFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTS-LETSNIYVGSSLIDM 570
MF M L + + S AS++ CAN++ L EQ+HC VK L NI ++L+
Sbjct: 282 MFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR--TALMVA 339
Query: 571 YVKCGFIGAA---HKVLSCMPQRNVVSMNALIAGYAQNN-VEDAVVLYRGMQTEGLSPND 626
Y KC + A K + C+ NVVS A+I+G+ QN+ E+AV L+ M+ +G+ PN+
Sbjct: 340 YSKCTAMLDALRLFKEIGCVG--NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNE 397
Query: 627 ITFTSLLDACD--GPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLL 684
T++ +L A P +++H +VK + ALL Y+ + +A +
Sbjct: 398 FTYSVILTALPVISP------SEVHAQVVKTNYE-RSSTVGTALLDAYVKLGKVEEAAKV 450
Query: 685 FTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVL-S 743
F+ + K V W+A+++G+AQ A+ + E+ + P++ TF S+L CA +
Sbjct: 451 FSGIDD-KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNA 509
Query: 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMI 803
S+ G + H + D SAL+ MYAK G+++ + +VF E++ ++SWNSMI
Sbjct: 510 SMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD-LVSWNSMI 568
Query: 804 VGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863
G+A++G A AL VF EMK+ + D VTF+GV AC+HAG V EG + F+ MV I
Sbjct: 569 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 628
Query: 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAK 923
P +H +CMVDL R G L++A + IE + S IW T+L AC VH+ GRLAA+
Sbjct: 629 APTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAE 688
Query: 924 KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFV 983
K+I ++PE+ + YV LSN+YA G+W E +R+ M E+ VKK PG SWI + T F+
Sbjct: 689 KIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFL 748
Query: 984 AGDTSHPNADRICAVLEDLTASMEKESYFPE 1014
AGD SHP D+I LEDL+ ++ Y P+
Sbjct: 749 AGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 250/742 (33%), Positives = 409/742 (55%), Gaps = 22/742 (2%)
Query: 291 WNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAI 350
W ++ + EAV + M G+K ++L ++ L ++ G +HA
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 351 KQGL-YSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVV 409
K G +V VA++L+N+Y KC + KVFD + ERN V WN+L+ +
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 410 DLFFAMKSSGFHADDFTYTSILSSCACL---EYLEMGRQLHAVIIKNKLATNLYVGNALV 466
+ F M FT S++++C+ L E L MG+Q+HA ++ K N ++ N LV
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLV 243
Query: 467 DMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDV 526
MY K L ++ +D V+WN ++ Q + EA R M L G+ PD+
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 527 SSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586
+ +S+L AC++++ L G+++H +++K N +VGS+L+DMY C + + +V
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 587 MPQRNVVSMNALIAGYAQN-NVEDAVVLYRGMQ-TEGLSPNDITFTSLLDACDGPYKFHL 644
M R + NA+IAGY+QN + ++A++L+ GM+ + GL N T ++ AC F
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 645 GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGH 704
IH +VK+GL D F+ L+ MY + A +F + + + V W +I+G+
Sbjct: 424 KEAIHGFVVKRGL-DRDRFVQNTLMDMYSRLGKIDIAMRIFGKMED-RDLVTWNTMITGY 481
Query: 705 AQNDSNYEALHFYREMRSH-----------NVLPDQATFVSVLRACAVLSSLRDGGEIHS 753
++ + +AL +M++ ++ P+ T +++L +CA LS+L G EIH+
Sbjct: 482 VFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHA 541
Query: 754 LIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAE 813
D GSAL+DMYAKCG ++ S +VFD++ ++N VI+WN +I+ + +G +
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN-VITWNVIIMAYGMHGNGQ 600
Query: 814 DALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM 873
+A+ + M P++VTF+ V ACSH+G V EG +IF M +G++P DH AC+
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACV 660
Query: 874 VDLLGRWGFLKEAEEFIEQLTFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932
VDLLGR G +KEA + + + + + + W++LLGA +H + G +AA+ LI+LEP
Sbjct: 661 VDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNV 720
Query: 933 PSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNA 992
S YV L+NIY++ G W++ +RR M+E+GV+K PGCSWI G + FVAGD+SHP +
Sbjct: 721 ASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQS 780
Query: 993 DRICAVLEDLTASMEKESYFPE 1014
+++ LE L M KE Y P+
Sbjct: 781 EKLSGYLETLWERMRKEGYVPD 802
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/668 (35%), Positives = 374/668 (55%), Gaps = 14/668 (2%)
Query: 355 YSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFA 414
+ N +++I+ + K + SA+ +FD++ +R V W L+G Y++N + E LF
Sbjct: 76 HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135
Query: 415 M--KSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATN--LYVGNALVDMYA 470
M SS D T+T++L C Q+HA +K TN L V N L+ Y
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYC 195
Query: 471 KSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSAS 530
+ R L+ A FE I +D+V++N +I GY ++G E+ ++F +M G P D + +
Sbjct: 196 EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSG 255
Query: 531 ILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR 590
+L A + G+Q+H SV T + + VG+ ++D Y K + + MP+
Sbjct: 256 VLKAVVGLHDFALGQQLHALSVTTGF-SRDASVGNQILDFYSKHDRVLETRMLFDEMPEL 314
Query: 591 NVVSMNALIAGYAQ-NNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIH 649
+ VS N +I+ Y+Q + E ++ +R MQ G + F ++L +G Q+H
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH 374
Query: 650 CLIVKKGLLFDDDFLHI--ALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQN 707
C + L D LH+ +L+ MY + +A L+F P ++TV WTA+ISG+ Q
Sbjct: 375 CQAL---LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ-RTTVSWTALISGYVQK 430
Query: 708 DSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITG 767
+ L + +MR N+ DQ+TF +VL+A A +SL G ++H+ I +G + +G
Sbjct: 431 GLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSG 490
Query: 768 SALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827
S L+DMYAKCG +K + QVF+EM +RN +SWN++I A NG E A+ F +M E+
Sbjct: 491 SGLVDMYAKCGSIKDAVQVFEEMPDRN-AVSWNALISAHADNGDGEAAIGAFAKMIESGL 549
Query: 828 MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAE 887
PD V+ LGVLTACSH G V +G + F+ M +GI P+ H ACM+DLLGR G EAE
Sbjct: 550 QPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAE 609
Query: 888 EFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP-ENPSPYVQLSNIYAAL 946
+ ++++ FEPD +W+++L AC +H++ AA+KL +E + + YV +SNIYAA
Sbjct: 610 KLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAA 669
Query: 947 GNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASM 1006
G W +V +++ MRE+G+KK P SW+ + + F + D +HPN D I + +LTA +
Sbjct: 670 GEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEI 729
Query: 1007 EKESYFPE 1014
E+E Y P+
Sbjct: 730 EREGYKPD 737
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1017 | ||||||
| 224085073 | 1026 | predicted protein [Populus trichocarpa] | 0.998 | 0.989 | 0.675 | 0.0 | |
| 225457769 | 1048 | PREDICTED: pentatricopeptide repeat-cont | 0.983 | 0.954 | 0.681 | 0.0 | |
| 15232006 | 1028 | pentatricopeptide repeat-containing prot | 0.960 | 0.950 | 0.579 | 0.0 | |
| 297833652 | 1028 | pentatricopeptide repeat-containing prot | 0.991 | 0.980 | 0.563 | 0.0 | |
| 307136370 | 1131 | pentatricopeptide repeat-containing prot | 0.935 | 0.840 | 0.583 | 0.0 | |
| 449475590 | 974 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.945 | 0.987 | 0.576 | 0.0 | |
| 449443954 | 1441 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.946 | 0.668 | 0.574 | 0.0 | |
| 356544234 | 916 | PREDICTED: pentatricopeptide repeat-cont | 0.867 | 0.962 | 0.610 | 0.0 | |
| 255570402 | 762 | pentatricopeptide repeat-containing prot | 0.703 | 0.938 | 0.702 | 0.0 | |
| 242076488 | 1029 | hypothetical protein SORBIDRAFT_06g02253 | 0.985 | 0.973 | 0.448 | 0.0 |
| >gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa] gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1432 bits (3708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/1019 (67%), Positives = 835/1019 (81%), Gaps = 4/1019 (0%)
Query: 1 MRLRFLYISSPNPSPHSMLHYSSFSKLPSES---THLVSNPIYTHLLESCLQQCKQIKTR 57
+R F +SP+ + HS H +FS +P+ S +H + IYTH+L++CLQ+ KQ+KT
Sbjct: 2 LRKFFFLKTSPSSNLHSFHHQLTFSAIPNGSNHPSHTLKPRIYTHILQNCLQKSKQVKTH 61
Query: 58 HMFDGSSQRLIRASITSRIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLE 117
+FD QRL + S T++IIHAQSLK GF SKG+LGN IVDLYAKC + AE+ F +LE
Sbjct: 62 SLFDEIPQRLSQFSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLE 121
Query: 118 DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQ 177
D+DILAWNSILSM+SK+G V K FGLL N G PN FTFAIVLS+C++ V GRQ
Sbjct: 122 DKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQ 181
Query: 178 LHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGL 237
+HC+V+++GFES S+C+GALI MYAK N ++DAR +FDGAV+LD VSWTSMI GY++ GL
Sbjct: 182 VHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGL 241
Query: 238 PEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISG 297
PE A ++F++M KVG PDQVAFVTVIN +LGRLD A +LF++M N NVVAWN+MISG
Sbjct: 242 PEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNLMISG 301
Query: 298 HAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSN 357
HAK GY EA+ +F+ MRKAG+KS+RSTLGSVLS I+SLAALDFGL+VHAEA+KQGL+SN
Sbjct: 302 HAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSN 361
Query: 358 VYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKS 417
VYV SSL++MYAKC KME+AKKVFD+L+E+N VLWNA+LGGY QN YA+EV++LFF MKS
Sbjct: 362 VYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKS 421
Query: 418 SGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEE 477
GF+ DDFTY+SILS+CACL+YL++G QLH+VIIKNK A+NL+VGNALVDMYAKS ALE+
Sbjct: 422 CGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALED 481
Query: 478 ARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACAN 537
AR+QFE I+N+DNVSWN IIVGYVQE D EAF++FRRMNL+GI+PD+VS ASILSACA+
Sbjct: 482 ARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACAS 541
Query: 538 IQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNA 597
++GL QG+QVHC SVKT ET +Y GSSLIDMY KCG I +AHK+L+CMP+R+VVSMNA
Sbjct: 542 VRGLEQGKQVHCLSVKTGQET-KLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNA 600
Query: 598 LIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGL 657
LIAGYAQ N+E AV L+R M EG++ +ITF SLLDAC K +LG QIH LI+K GL
Sbjct: 601 LIAGYAQINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGL 660
Query: 658 LFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFY 717
DD+FL ++LL MYMNS R TDA +LF+EF NPKS V+WTA+ISG +QND + AL Y
Sbjct: 661 QLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLY 720
Query: 718 REMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777
+EMRS NVLPDQATFVS LRACAV+SS++DG E HSLIFHTG+D DE+T SAL+DMYAKC
Sbjct: 721 KEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKC 780
Query: 778 GDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV 837
GDVK S QVF EM+ + VISWNSMIVGFAKNGYAEDAL+VF EMK++ PDDVTFLGV
Sbjct: 781 GDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGV 840
Query: 838 LTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEP 897
LTACSH+GRVSEGR IF+ MV+ +G+QPR DHCACMVDLLGRWG LKEAEEFI +L FEP
Sbjct: 841 LTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEP 900
Query: 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957
D+++W T+LGAC +H DDIRG+ AA+KLIELEP+N SPYV LSNIYAA GNW+EVNTLRR
Sbjct: 901 DAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRR 960
Query: 958 EMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEID 1016
EMREKGVKK PGCSWIV+GQ TN FVAGD SH +A I A+L+DLT M + Y ++D
Sbjct: 961 EMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLMRENDYVVQLD 1019
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial [Vitis vinifera] gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1422 bits (3682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1001 (68%), Positives = 813/1001 (81%), Gaps = 1/1001 (0%)
Query: 17 SMLHYSSFSKLPSESTHLVSNPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITSRI 76
S H S+FS + + + I+THLL+ CLQQC++IK RH FD + QRL +AS TS+
Sbjct: 43 SFHHQSNFSTIQRQVNQTSEHKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKT 102
Query: 77 IHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGS 136
IHAQ+LKFGFGSKG LG+AIVDLYAKCG A K F++LE RDILAWNS+LSMYS++GS
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162
Query: 137 FENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGA 196
E V FG L N G PN FT+AIVLS+C++ +D+ G+Q+HC VI++GFE +SFC+G+
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222
Query: 197 LIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPD 256
LIDMY+K ++ DAR++FD VD DTVSWT+MIAGYVQ GLPE A ++FE M K+G VPD
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282
Query: 257 QVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRK 316
QVAFVTVI C LGRLD+A +LF QM N NVVAWNVMISGH KRG D EA+++FK M K
Sbjct: 283 QVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWK 342
Query: 317 AGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMES 376
GVKS+RSTLGSVLS I+SL AL++GL+VHA+AIKQGL SNVYV SSLINMYAKCEKME+
Sbjct: 343 TGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEA 402
Query: 377 AKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCAC 436
AKKVFD+LDERN VLWNA+LGGY+QN YA +V+ LF M+ GF D+FTYTSILS+CAC
Sbjct: 403 AKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACAC 462
Query: 437 LEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAI 496
LE LEMGRQLH+ IIK+ NL+V N LVDMYAK ALEEAR+QFE I+N+DNVSWNAI
Sbjct: 463 LECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAI 522
Query: 497 IVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSL 556
IVGYVQE D EAFNMFRRM L GI PD+VS ASILS CAN+Q L QGEQVHCF VK+ L
Sbjct: 523 IVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGL 582
Query: 557 ETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRG 616
+T +Y GSSLIDMYVKCG I AA V SCMP R+VVSMNA+IAGYAQN++ +A+ L++
Sbjct: 583 QTC-LYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQE 641
Query: 617 MQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSK 676
MQ EGL+P++ITF SLLDAC GPYK +LG QIHCLI K+GLL+D DFL ++LL MYMNS+
Sbjct: 642 MQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQ 701
Query: 677 RNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVL 736
R TDA +LF+EF PKST+LWTA+ISGH QN + EAL Y+EM +N PDQATF SVL
Sbjct: 702 RKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVL 761
Query: 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV 796
RAC++L+SL DG IHSLIFH G D DE+TGSA++DMYAKCGD+K S QVF+EM +N V
Sbjct: 762 RACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDV 821
Query: 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFET 856
ISWNSMIVGFAKNGYAE+ALK+F EMK T+ PDDVTFLGVLTACSHAGRVSEGR+IF+
Sbjct: 822 ISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDI 881
Query: 857 MVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDI 916
MV + I PR+DHCACM+DLLGRWGFLKEAEEFI++L FEP++ IW TLLGAC +H DDI
Sbjct: 882 MVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDI 941
Query: 917 RGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLG 976
RGR AA+KLIELEPEN SPYV LSNIYAA GNW+EVN++RR MREKG++K PGCSWIV+G
Sbjct: 942 RGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVG 1001
Query: 977 QNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEIDA 1017
Q TN FVAGD HP+A I A+L+DL A M+++ Y E D+
Sbjct: 1002 QKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAETDS 1042
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09040, mitochondrial; Flags: Precursor gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana] gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1170 bits (3028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/980 (57%), Positives = 736/980 (75%), Gaps = 3/980 (0%)
Query: 37 NPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITSRIIHAQSLKFGFGSKGLLGNAI 96
+ I+ LLE CL QCK K+R +FD QRL A + +H++SL G S+G LGNAI
Sbjct: 42 DQIHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAI 101
Query: 97 VDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNG 156
VDLYAKC + AEK FD LE +D+ AWNS+LSMYS G V +SF L PN
Sbjct: 102 VDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNK 160
Query: 157 FTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDG 216
FTF+IVLS C++ +V +GRQ+HC +I++G E +S+C GAL+DMYAK + +SDARRVF+
Sbjct: 161 FTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEW 220
Query: 217 AVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEA 276
VD +TV WT + +GYV+AGLPE A +FE+M G PD +AFVTVIN LG+L +A
Sbjct: 221 IVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDA 280
Query: 277 RELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSL 336
R LF +M +P+VVAWNVMISGH KRG + A+ YF MRK+ VKS+RSTLGSVLS I +
Sbjct: 281 RLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIV 340
Query: 337 AALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALL 396
A LD GL+VHAEAIK GL SN+YV SSL++MY+KCEKME+A KVF++L+E+N V WNA++
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMI 400
Query: 397 GGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLA 456
GY+ N +H+V++LF MKSSG++ DDFT+TS+LS+CA LEMG Q H++IIK KLA
Sbjct: 401 RGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLA 460
Query: 457 TNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRM 516
NL+VGNALVDMYAK ALE+AR+ FER+ ++DNV+WN II YVQ+ + EAF++F+RM
Sbjct: 461 KNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRM 520
Query: 517 NLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGF 576
NL GIV D AS L AC ++ GL QG+QVHC SVK L+ +++ GSSLIDMY KCG
Sbjct: 521 NLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLD-RDLHTGSSLIDMYSKCGI 579
Query: 577 IGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDAC 636
I A KV S +P+ +VVSMNALIAGY+QNN+E+AVVL++ M T G++P++ITF ++++AC
Sbjct: 580 IKDARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639
Query: 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVL 696
P LGTQ H I K+G + ++L I+LL MYMNS+ T+A LF+E +PKS VL
Sbjct: 640 HKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVL 699
Query: 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756
WT ++SGH+QN EAL FY+EMR VLPDQATFV+VLR C+VLSSLR+G IHSLIF
Sbjct: 700 WTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIF 759
Query: 757 HTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDAL 816
H +DLDE+T + LIDMYAKCGD+K S+QVFDEM R+ V+SWNS+I G+AKNGYAEDAL
Sbjct: 760 HLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDAL 819
Query: 817 KVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876
K+F M+++ MPD++TFLGVLTACSHAG+VS+GR+IFE M+ +GI+ RVDH ACMVDL
Sbjct: 820 KIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDL 879
Query: 877 LGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPY 936
LGRWG+L+EA++FIE +PD+R+W++LLGAC +H DDIRG ++A+KLIELEP+N S Y
Sbjct: 880 LGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAY 939
Query: 937 VQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRIC 996
V LSNIYA+ G W + N LR+ MR++GVKK PG SWI + Q T+ F AGD SH +I
Sbjct: 940 VLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIE 999
Query: 997 AVLEDLTASMEKESYF-PEI 1015
LEDL M+ ++ P+I
Sbjct: 1000 MFLEDLYDLMKDDAVVNPDI 1019
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/1024 (56%), Positives = 751/1024 (73%), Gaps = 16/1024 (1%)
Query: 3 LRFLYISSPNPSPHSMLHYSSFSKLPSEST--------HLVSN--PIYTHLLESCLQQCK 52
+ F +S+P+ S M S + S ST H++ N I+ LLE CL+QCK
Sbjct: 1 MYFRVLSTPSSS---MFDSFSLVRRLSSSTELGRRVYGHVLPNHDQIHQGLLEICLEQCK 57
Query: 53 QIKTRHMFDGSSQRLIRASITSRIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKV 112
K+R +FD RL A + +H++SL G S+G LGNAIVDLYAKC + AEK
Sbjct: 58 LFKSRKVFDEMPHRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQ 117
Query: 113 FDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDV 172
F+ LE +D+ AWNS+LSMYS G V +SF L PN FTF+IVLS ++ +V
Sbjct: 118 FNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNV 176
Query: 173 SYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGY 232
+GRQ+HC +I++G E +S+C GAL+DMYAK + + DA+RVFDG VD +TV WT + +GY
Sbjct: 177 EFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGY 236
Query: 233 VQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWN 292
V+AGLPE A +FE+M G PD +AFVTVIN +LG+L +AR LF +M +P+VVAWN
Sbjct: 237 VKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWN 296
Query: 293 VMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQ 352
VMISGH KRG + A+ YF MRK+ VKS+RSTLGSVLS I +A LD GL+VHAEAIK
Sbjct: 297 VMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356
Query: 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLF 412
GL SN+YV SSL++MY+KCEKME+A KVF++L+ERN VLWNA++ GY+ N +H+V++LF
Sbjct: 357 GLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELF 416
Query: 413 FAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKS 472
MKSSG++ DDFT+TS+LS+CA LEMG Q H++IIK KL NL+VGNALVDMYAK
Sbjct: 417 MDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKC 476
Query: 473 RALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASIL 532
ALE+AR+ FE + ++DNVSWN II GYVQ+ + EAF++F RMN GIV D AS L
Sbjct: 477 GALEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTL 536
Query: 533 SACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNV 592
AC N+ GL QG+QVHC SVK L+ ++ GSSLIDMY KCG I A KV S MP+ +V
Sbjct: 537 KACTNVHGLYQGKQVHCLSVKCGLDRV-LHTGSSLIDMYSKCGIIEDARKVFSSMPEWSV 595
Query: 593 VSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLI 652
VSMNALIAGY+QNN+E+AVVL++ M T+G++P++ITF ++++AC P LGTQ H I
Sbjct: 596 VSMNALIAGYSQNNLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655
Query: 653 VKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYE 712
+K G + ++L I+LL +YMNS+R +A LF+E +PKS VLWT ++SGH+QN E
Sbjct: 656 IKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEE 715
Query: 713 ALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALID 772
AL FY+EMR LPDQATFV+VLR C+VLSSLR+G IHSLIFH +DLDE+T + LID
Sbjct: 716 ALKFYKEMRHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLID 775
Query: 773 MYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV 832
MYAKCGD+K S+QVFDEM R+ V+SWNS+I G+AKNGYAEDALK+F M+++ MPD++
Sbjct: 776 MYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEI 835
Query: 833 TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ 892
TFLGVLTACSHAG+VS+GR+IFE M+ +GI+ RVDH ACMVDLLGRWG+L+EA++FIE
Sbjct: 836 TFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEA 895
Query: 893 LTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952
+PD+R+W++LLGAC +H DD+RG +AA++LIELEP+N S YV LSNIYA+ G W E
Sbjct: 896 QNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEA 955
Query: 953 NTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYF 1012
N LR+ MR++GVKK PG SWI +GQ + F AGD SH + +I LEDL M+ ++
Sbjct: 956 NALRKAMRDRGVKKVPGYSWIDVGQRRHIFAAGDQSHSDIGKIEMFLEDLYDLMKDDAVV 1015
Query: 1013 -PEI 1015
P+I
Sbjct: 1016 NPDI 1019
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 1161 bits (3003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/953 (58%), Positives = 726/953 (76%), Gaps = 2/953 (0%)
Query: 27 LPSESTHLVSNPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITSRIIHAQSLKFGF 86
+P++ + +P ++ L+ CLQ C++I+ ++F+ + +++A T+++IH++SLK G
Sbjct: 14 VPNQQLVKILSP-HSEFLQICLQHCRRIQAHNLFNEKPKAVLQALSTAKVIHSKSLKIGV 72
Query: 87 GSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGL 146
G KGLLGN IVDLY KCG + A+K F RLE +D+ AWNS+LSMY G F V +SF
Sbjct: 73 GLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVC 132
Query: 147 LCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNN 206
+ N G PN FTFA+VLSACS D++YG+Q+HC V ++GF SFC+G LIDMYAK N
Sbjct: 133 MWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRN 192
Query: 207 VSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINV 266
+ DAR VFDGA++LDTVSWT++IAGYV+ G P A ++F+KM +VG VPDQ+A VTVIN
Sbjct: 193 LRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINA 252
Query: 267 CFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTL 326
LGRL +AR+LF Q+ NPNVVAWNVMISGHAKRG+ EA+++F ++K G+K++RS+L
Sbjct: 253 YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSL 312
Query: 327 GSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE 386
GSVLS I+SL+ L++G +VHA+AIK+GL NVYV S+L+NMYAKC KM++AK+VF+SL E
Sbjct: 313 GSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGE 372
Query: 387 RNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQL 446
RN VLWNA+LGG++QN A EV++ F MK G D+FT+TSI S+CA L YL+ G QL
Sbjct: 373 RNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQL 432
Query: 447 HAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDV 506
H V+IKNK +NL+V NALVDMYAKS AL+EARKQFE ++ DNVSWNAIIVGYVQE
Sbjct: 433 HTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYN 492
Query: 507 FEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSS 566
EAF MFRRM G++PD+VS ASI+SACAN++ QG+Q HC VK L+TS GSS
Sbjct: 493 DEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTC-AGSS 551
Query: 567 LIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPND 626
LIDMYVKCG + AA V MP RNVVS+NALIAGY +++E+A+ L++ +Q GL P +
Sbjct: 552 LIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSHLEEAIHLFQEIQMVGLKPTE 611
Query: 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT 686
+TF LLD CDG + +LG QIH ++K G L + + ++LL MYMNS+R D+ LF+
Sbjct: 612 VTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFS 671
Query: 687 EFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLR 746
E PK V+WTA+ISG+AQ + + +AL FY+ MRS N+LPDQATF SVLRACA +SSL+
Sbjct: 672 ELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQ 731
Query: 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGF 806
G E+HSLIFHTG+++DEIT S+LIDMYAKCGDVK S QVF EM RN VISWNSMIVG
Sbjct: 732 TGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGL 791
Query: 807 AKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR 866
AKNGYAE+AL++F +M++ +PD+VTFLGVL+ACSHAGRVSEGR++F+ MV+ + +QPR
Sbjct: 792 AKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPR 851
Query: 867 VDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLI 926
VDH CMVD+LGRWGFL EAEEFI +L + D +W+TLLGAC H D++RG+ AA KL+
Sbjct: 852 VDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLM 911
Query: 927 ELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNT 979
EL+P++ S YV LS +YA NW+ ++LRREM+ KGVKK PG SWI G++
Sbjct: 912 ELKPQSSSSYVLLSGLYAESENWSGADSLRREMKLKGVKKLPGYSWIEPGRDV 964
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 557/966 (57%), Positives = 725/966 (75%), Gaps = 4/966 (0%)
Query: 18 MLHYSSFSKLPS--ESTHLVSN-PIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITS 74
ML S + +P+ + LV N ++ L+ CLQ C +I+ ++FD + +++A T+
Sbjct: 1 MLPQSPXNSIPNCVSNQQLVKNLNPHSEFLQICLQHCWRIQAHNLFDEKPKPVLQALSTA 60
Query: 75 RIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKR 134
++IH++SLK G G KGLLGN IVDLY KCG + A+K F RLE +D+ AWNS+LSMY
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDH 120
Query: 135 GSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCK 194
G F V +SF + N PN FTFA+VLSACS DV++GRQ+HC V + GF SFC+
Sbjct: 121 GLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQ 180
Query: 195 GALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCV 254
G LIDMYAK + DAR VFDGA++LDTVSWT++IAGYV+ G P A ++F++M +VG
Sbjct: 181 GGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHA 240
Query: 255 PDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRM 314
PDQ+ VTV+N LGRL +AR+LF Q+ NPNVVAWNVMISGHAKRG+ EA+++F +
Sbjct: 241 PDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLEL 300
Query: 315 RKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKM 374
+K G+K++RS+LGSVLS I+SL+ L++G +VHA+A K+GL NVYV S+L+NMYAKC KM
Sbjct: 301 KKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKM 360
Query: 375 ESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSC 434
++AK+VF+SL ERN VLWNA+LGG++QN A EV++ F MK G D+FT+TSI S+C
Sbjct: 361 DAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSAC 420
Query: 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWN 494
A L YL G QLH V+IKNK A+NL+V NALVDMYAKS AL+EARKQFE ++ DNVSWN
Sbjct: 421 ASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWN 480
Query: 495 AIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKT 554
AIIVGYVQE EAF MFRRM G++PD+VS ASI+SACAN+Q L +G+Q HC VK
Sbjct: 481 AIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKV 540
Query: 555 SLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLY 614
L+TS GSSLIDMYVKCG + AA V MP RNVVS+NALIAGY ++E+A+ L+
Sbjct: 541 GLDTSTC-AGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLF 599
Query: 615 RGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMN 674
+ +Q GL P ++TF LLD CDG + +LG QIH ++K G L + + ++LL +YMN
Sbjct: 600 QEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMN 659
Query: 675 SKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVS 734
S+R D+ LF+E PK V+WTA+ISG+AQ + + +AL FY+ MRS N+LPDQA F S
Sbjct: 660 SQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFAS 719
Query: 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERN 794
VLRACA +SSL++G EIHSLIFHTG+++DE+T S+LIDMYAKCGDVK S QVF EM RN
Sbjct: 720 VLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRN 779
Query: 795 YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIF 854
VISWNSMIVG AKNGYAE+AL++F +M++ +PD+VTFLGVL+ACSHAGRVSEGR++F
Sbjct: 780 NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVF 839
Query: 855 ETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRD 914
+ MV+ + +QPRVDH CMVD+LGRWGFL EAEEFI +L + D +W+TLLGAC H D
Sbjct: 840 DLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGD 899
Query: 915 DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIV 974
++RG+ AA KL+EL+P++ S YV LS+IYA NW+ +LRREM+ KGVKK PG SWI
Sbjct: 900 EVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWIE 959
Query: 975 LGQNTN 980
G++++
Sbjct: 960 PGRDSS 965
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/967 (57%), Positives = 725/967 (74%), Gaps = 4/967 (0%)
Query: 18 MLHYSSFSKLPS--ESTHLVSN-PIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITS 74
ML S + +P+ + LV N ++ L+ CLQ C +I+ ++FD + +++A T+
Sbjct: 1 MLPQSPXNSIPNCVSNQQLVKNLNPHSEFLQICLQHCWRIQAHNLFDEKPKPVLQALSTA 60
Query: 75 RIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKR 134
++IH++SLK G G KGLLGN IVDLY KCG + A+K F RLE +D+ AWNS+LSMY
Sbjct: 61 KVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDH 120
Query: 135 GSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCK 194
G F V +SF + N PN FTFA+VLSACS DV++GRQ+HC V + GF SFC+
Sbjct: 121 GLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQ 180
Query: 195 GALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCV 254
G LIDMYAK + DAR VFDGA++LDTVSWT++IAGYV+ G P A ++F++M +VG
Sbjct: 181 GGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHA 240
Query: 255 PDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRM 314
PDQ+ VTV+N LGRL +AR+LF Q+ NPNVVAWNVMISGHAKRG+ EA+++F +
Sbjct: 241 PDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLEL 300
Query: 315 RKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKM 374
+K G+K++RS+LGSVLS I+SL+ L++G +VHA+A K+GL NVYV S+L+NMYAKC KM
Sbjct: 301 KKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKM 360
Query: 375 ESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSC 434
++AK+VF+SL ERN VLWNA+LGG++QN A EV++ F MK G D+FT+TSI S+C
Sbjct: 361 DAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSAC 420
Query: 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWN 494
A L YL G QLH V+IKNK A+NL+V NALVDMYAKS AL+EARKQFE ++ DNVSWN
Sbjct: 421 ASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWN 480
Query: 495 AIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKT 554
AIIVGYVQE EAF MFRRM G++PD+VS ASI+SACAN+Q L +G+Q HC VK
Sbjct: 481 AIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKV 540
Query: 555 SLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLY 614
L+TS GSSLIDMYVKCG + AA V MP RNVVS+NALIAGY ++E+A+ L+
Sbjct: 541 GLDTSTC-AGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLF 599
Query: 615 RGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMN 674
+ +Q GL P ++TF LLD CDG + +LG QIH ++K G L + + ++LL +YMN
Sbjct: 600 QEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMN 659
Query: 675 SKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVS 734
S+R D+ LF+E PK V+WTA+ISG+AQ + + +AL FY+ MRS N+LPDQA F S
Sbjct: 660 SQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFAS 719
Query: 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERN 794
VLRACA +SSL++G EIHSLIFHTG+++DE+T S+LIDMYAKCGDVK S QVF EM RN
Sbjct: 720 VLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRN 779
Query: 795 YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIF 854
VISWNSMIVG AKNGYAE+AL++F +M++ +PD+VTFLGVL+ACSHAGRVSEGR++F
Sbjct: 780 NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVF 839
Query: 855 ETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRD 914
+ MV+ + + PRVDH CMVD+LGRWGFL EAEEFI +L + D +W+TLLGAC H D
Sbjct: 840 DLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWSTLLGACRKHGD 899
Query: 915 DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIV 974
++RG+ AA KL+EL+P++ S YV LS+IYA NW+ +LRREM+ KGVKK PG SWI
Sbjct: 900 EVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLRREMKLKGVKKLPGYSWIE 959
Query: 975 LGQNTNF 981
G+++++
Sbjct: 960 PGRDSSY 966
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/888 (61%), Positives = 677/888 (76%), Gaps = 6/888 (0%)
Query: 132 SKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSS 191
+K S E V + + N G P+ FTFA+ LSAC+K ++ GR +H VI+ G ES+S
Sbjct: 23 TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTS 82
Query: 192 FCKGALIDMYAKLNNVSDARRVFDGAV--DLDTVSWTSMIAGYVQAGLPEAAFELFEKMI 249
FC+GALI +YAK N+++ AR +F A L TVSWT++I+GYVQAGLP A +F+KM
Sbjct: 83 FCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKM- 141
Query: 250 KVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNP--NVVAWNVMISGHAKRGYDAEA 307
+ VPDQVA VTV+N +LG+LD+A +LF QM P NVVAWNVMISGHAK + EA
Sbjct: 142 RNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEA 201
Query: 308 VNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINM 367
+ +F +M K GVKSSRSTL SVLS I+SLAAL+ GL+VHA AIKQG S++YVASSLINM
Sbjct: 202 LAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINM 261
Query: 368 YAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTY 427
Y KC+ + A++VFD++ ++N ++WNA+LG YSQN + V++LF M S G H D+FTY
Sbjct: 262 YGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTY 321
Query: 428 TSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN 487
TSILS+CAC EYLE+GRQLH+ IIK + +NL+V NAL+DMYAK+ AL+EA K FE +
Sbjct: 322 TSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTY 381
Query: 488 QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQV 547
+D++SWNAIIVGYVQE AF++FRRM L GIVPD+VS ASILSAC NI+ L G+Q
Sbjct: 382 RDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQF 441
Query: 548 HCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNV 607
HC SVK LET N++ GSSLIDMY KCG I AHK S MP+R+VVS+NALIAGYA N
Sbjct: 442 HCLSVKLGLET-NLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKNT 500
Query: 608 EDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIA 667
++++ L MQ GL P++ITF SL+D C G K LG QIHC IVK+GLL +FL +
Sbjct: 501 KESINLLHEMQILGLKPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTS 560
Query: 668 LLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLP 727
LL MYM+S+R DA +LF+EF + KS V+WTA+ISGH QN+ + AL+ YREMR +N+ P
Sbjct: 561 LLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISP 620
Query: 728 DQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVF 787
DQATFV+VL+ACA+LSSL DG EIHSLIFHTG+DLDE+T SAL+DMYAKCGDVK S QVF
Sbjct: 621 DQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVF 680
Query: 788 DEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRV 847
+E+A + VISWNSMIVGFAKNGYA+ ALKVF EM ++ PDDVTFLGVLTACSHAG V
Sbjct: 681 EELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWV 740
Query: 848 SEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLG 907
EGRQIF+ MV+ +GI+PRVDH ACMVDLLGRWGFLKEAEEFI++L EP++ IW LLG
Sbjct: 741 YEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLG 800
Query: 908 ACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKF 967
AC +H D+ RG+ AAKKLIELEP++ SPYV LSN+YAA GNW+E +LRR M +K ++K
Sbjct: 801 ACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKI 860
Query: 968 PGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEI 1015
PGCSWIV+GQ TN FVAGD SH + D I L+ LTA ++ + F +I
Sbjct: 861 PGCSWIVVGQETNLFVAGDISHSSYDEISKALKHLTALIKDNNRFQDI 908
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1044 bits (2700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/716 (70%), Positives = 603/716 (84%), Gaps = 1/716 (0%)
Query: 140 VFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALID 199
V K +GLL + G PN FTFAIVLS C++ V +GR +HC+V++LGFE SSFC GALID
Sbjct: 2 VLKCYGLLWSHGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALID 61
Query: 200 MYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVA 259
MYAK N +SD RRVFDG V LDTVSWTS+IAGYV+AGLPE A E+FE+M KVG PDQVA
Sbjct: 62 MYAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVA 121
Query: 260 FVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGV 319
FVTVIN LGRLD+A LF QM NPNVVAWNVMISGHA+RG++ +++ F MRKAG+
Sbjct: 122 FVTVINAYVALGRLDDALGLFFQMPNPNVVAWNVMISGHAQRGHETKSIELFCNMRKAGI 181
Query: 320 KSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKK 379
KS+RSTLGSVLS I+SL LDFGL+VHAEAIKQGL SNVYV SSLINMYAKC+++E+AKK
Sbjct: 182 KSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQGLDSNVYVGSSLINMYAKCKELEAAKK 241
Query: 380 VFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEY 439
VFD +DERN VLWNA++GGY+QN YAHEV++L MKS GFH D+FTYTSILS+CACLE+
Sbjct: 242 VFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEH 301
Query: 440 LEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVG 499
+E GRQLH++IIKNK A+NL+VGNAL+DMYAKS LE+ARKQFE ++++DNVSWNAIIVG
Sbjct: 302 VEGGRQLHSIIIKNKFASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVG 361
Query: 500 YVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETS 559
YVQE D EAF MF++M+LVGI+PD+VS ASILSACAN++G QG+ +HC SVK+ LETS
Sbjct: 362 YVQEEDEVEAFLMFQKMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETS 421
Query: 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQT 619
+Y GSSLIDMY KCG +G+A K+L MP+ +VVS+NALIAGYA N+E+A++L+ MQ
Sbjct: 422 -LYAGSSLIDMYAKCGDVGSAQKILKSMPEHSVVSINALIAGYAPVNLEEAIILFEKMQA 480
Query: 620 EGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNT 679
EGL+P++ITF SLLD C GP + LG QIHCLI+K+GL +DDDFL ++LL MY+ S R T
Sbjct: 481 EGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRGLQYDDDFLGVSLLGMYVKSLRKT 540
Query: 680 DARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRAC 739
DAR+LF+EF NPKST+LWTA+ISG AQN+ + EAL FY+EMRS N LPDQATFVSVLRAC
Sbjct: 541 DARILFSEFSNPKSTILWTAMISGLAQNNCSDEALQFYQEMRSCNALPDQATFVSVLRAC 600
Query: 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISW 799
AVLSS+ DG EIHSLIF TG DLDE T SALIDMYAKCGDV+ S QVF++M +N VISW
Sbjct: 601 AVLSSIGDGREIHSLIFRTGLDLDESTCSALIDMYAKCGDVRSSMQVFEDMHSKNDVISW 660
Query: 800 NSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFE 855
NSMIVGFAKNGYAE+AL++F+EMK+ +PDDVTFLGVLTACSHAGRVSEGRQIF+
Sbjct: 661 NSMIVGFAKNGYAENALRIFNEMKQAHVIPDDVTFLGVLTACSHAGRVSEGRQIFD 716
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor] gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/1010 (44%), Positives = 644/1010 (63%), Gaps = 8/1010 (0%)
Query: 11 PNPSPHSMLHYSSFSKLPSESTHLVSNPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIRA 70
P P H + + + + L Y LL S ++C+ H FD + R +A
Sbjct: 15 PRPKQHPIRSLPASASAGAAGGELHPTAYYAALLGSLSRECRH--AHHPFDATPHRTHQA 72
Query: 71 SITSRIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFD--RLEDRDILAWNSIL 128
++HA+ L+ G +G LG+A+VDLY + G A + A +S+L
Sbjct: 73 RACG-VLHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVL 131
Query: 129 SMYSKRGSFENVFKSFGLL-CNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGF 187
S +++ GS +V +F L C+ GG P+ F A+VLSACS+ + GRQ+HC V++ GF
Sbjct: 132 SCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGF 191
Query: 188 ESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEK 247
SS+FC+ L+DMYAK V DARRVFDG DT+ W SMIAGY + G + A LF +
Sbjct: 192 CSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSR 251
Query: 248 MIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEA 307
M K+G PDQV +VT+I+ ++GRL +AR L ++Q P+ VAWN +IS +++ G ++E
Sbjct: 252 MEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEV 311
Query: 308 VNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINM 367
+K M++ G+ +RST S+LS +S+ A D G +HA A+K GL +NV+V SSLIN+
Sbjct: 312 FGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINL 371
Query: 368 YAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTY 427
Y K + AKKVFD E+N V+WNA+L G+ QN E + +F M+ + ADDFT+
Sbjct: 372 YVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTF 431
Query: 428 TSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN 487
S+L +C L+ L++GRQ+H + IKN + +L+V NA++DMY+K A++ A+ F I
Sbjct: 432 VSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPG 491
Query: 488 QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQV 547
+D+VSWNA+IVG + EA M +RM GI PD+VS A+ ++AC+NI+ G+Q+
Sbjct: 492 KDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQI 551
Query: 548 HCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNV 607
HC S+K ++ SN VGSSLID+Y K G + ++ KVL+ + ++V +NALI G QNN
Sbjct: 552 HCASIKYNV-CSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNR 610
Query: 608 ED-AVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHI 666
ED A+ L++ + +G P++ TF S+L C GP +G Q+H +K LL D L I
Sbjct: 611 EDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGI 670
Query: 667 ALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVL 726
+L+ +Y+ K DA L E P+ K+ V WTA ISG+AQN + ++L + MRSH+V
Sbjct: 671 SLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVR 730
Query: 727 PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQV 786
D+ATF SVL+AC+ +++L DG EIH LI +G+ E SAL+DMY+KCGDV S ++
Sbjct: 731 SDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSFEI 790
Query: 787 FDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGR 846
F E+ + ++ WNSMIVGFAKNGYA +AL +F +M+E+Q PD+VT LGVL ACSHAG
Sbjct: 791 FKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACSHAGL 850
Query: 847 VSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLL 906
+SEGR +F++M +GI PRVDH AC++DLLGR G L+EA+E I+QL F D IW T L
Sbjct: 851 ISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWATFL 910
Query: 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKK 966
AC +H+D+ RG++AAKKL+E+EP+ S YV LS+++AA GNW E R MREKGV K
Sbjct: 911 AACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAKVAREAMREKGVMK 970
Query: 967 FPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEID 1016
FPGCSWI +G TN FV DT HP+ I +L+DLT M K+ E D
Sbjct: 971 FPGCSWITVGNKTNLFVVQDTHHPDTLGIYKMLDDLTGMMNKDDRIEEYD 1020
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1017 | ||||||
| TAIR|locus:2095289 | 1028 | AT3G09040 "AT3G09040" [Arabido | 0.958 | 0.948 | 0.573 | 1.1e-302 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.806 | 0.770 | 0.334 | 1.3e-123 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.641 | 0.790 | 0.355 | 5.1e-123 | |
| TAIR|locus:2083961 | 768 | AT3G53360 "AT3G53360" [Arabido | 0.703 | 0.930 | 0.350 | 3.3e-118 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.748 | 0.764 | 0.346 | 5.4e-118 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.724 | 0.849 | 0.354 | 5e-115 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.724 | 0.859 | 0.327 | 6.4e-115 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.710 | 0.819 | 0.330 | 1.7e-114 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.720 | 0.823 | 0.335 | 1.7e-114 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.703 | 0.841 | 0.348 | 7.3e-114 |
| TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2905 (1027.7 bits), Expect = 1.1e-302, P = 1.1e-302
Identities = 561/978 (57%), Positives = 727/978 (74%)
Query: 39 IYTHLLESCLQQCKQIKTRHMFDGSSQRLIRASITSRIIHAQXXXXXXXXXXXXXNAIVD 98
I+ LLE CL QCK K+R +FD QRL A + +H++ NAIVD
Sbjct: 44 IHQRLLEICLGQCKLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVD 103
Query: 99 LYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFT 158
LYAKC + AEK FD LE +D+ AWNS+LSMYS G V +SF L PN FT
Sbjct: 104 LYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFT 162
Query: 159 FAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAV 218
F+IVLS C++ +V +GRQ+HC +I++G E +S+C GAL+DMYAK + +SDARRVF+ V
Sbjct: 163 FSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIV 222
Query: 219 DLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARE 278
D +TV WT + +GYV+AGLPE A +FE+M G PD +AFVTVIN LG+L +AR
Sbjct: 223 DPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARL 282
Query: 279 LFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAA 338
LF +M +P+VVAWNVMISGH KRG + A+ YF MRK+ VKS+RSTLGSVLS I +A
Sbjct: 283 LFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVAN 342
Query: 339 LDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGG 398
LD GL+VHAEAIK GL SN+YV SSL++MY+KCEKME+A KVF++L+E+N V WNA++ G
Sbjct: 343 LDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRG 402
Query: 399 YSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATN 458
Y+ N +H+V++LF MKSSG++ DDFT+TS+LS+CA LEMG Q H++IIK KLA N
Sbjct: 403 YAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKN 462
Query: 459 LYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNL 518
L+VGNALVDMYAK ALE+AR+ FER+ ++DNV+WN II YVQ+ + EAF++F+RMNL
Sbjct: 463 LFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNL 522
Query: 519 VGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIG 578
GIV D AS L AC ++ GL QG+QVHC SVK L+ +++ GSSLIDMY KCG I
Sbjct: 523 CGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDR-DLHTGSSLIDMYSKCGIIK 581
Query: 579 AAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDG 638
A KV S +P+ +VVSMNALIAGY+QNN+E+AVVL++ M T G++P++ITF ++++AC
Sbjct: 582 DARKVFSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEMLTRGVNPSEITFATIVEACHK 641
Query: 639 PYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWT 698
P LGTQ H I K+G + ++L I+LL MYMNS+ T+A LF+E +PKS VLWT
Sbjct: 642 PESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWT 701
Query: 699 AVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT 758
++SGH+QN EAL FY+EMR VLPDQATFV+VLR C+VLSSLR+G IHSLIFH
Sbjct: 702 GMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHL 761
Query: 759 GYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKV 818
+DLDE+T + LIDMYAKCGD+K S+QVFDEM R+ V+SWNS+I G+AKNGYAEDALK+
Sbjct: 762 AHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKI 821
Query: 819 FHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLG 878
F M+++ MPD++TFLGVLTACSHAG+VS+GR+IFE M+ +GI+ RVDH ACMVDLLG
Sbjct: 822 FDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLG 881
Query: 879 RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938
RWG+L+EA++FIE +PD+R+W++LLGAC +H DDIRG ++A+KLIELEP+N S YV
Sbjct: 882 RWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVL 941
Query: 939 LSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAV 998
LSNIYA+ G W + N LR+ MR++GVKK PG SWI + Q T+ F AGD SH +I
Sbjct: 942 LSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMF 1001
Query: 999 LEDLTASMEKESYF-PEI 1015
LEDL M+ ++ P+I
Sbjct: 1002 LEDLYDLMKDDAVVNPDI 1019
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 278/830 (33%), Positives = 449/830 (54%)
Query: 188 ESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLP-EAAFELFE 246
E + F +I A N + + +F V + +G ++A AF++ E
Sbjct: 148 ERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVE 207
Query: 247 ----KMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRG 302
+++ G V +I++ G +D AR +F ++ + +W MISG +K
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267
Query: 303 YDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVAS 362
+AEA+ F M G+ + SVLS + +L+ G +H +K G S+ YV +
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327
Query: 363 SLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHA 422
+L+++Y + SA+ +F ++ +R+AV +N L+ G SQ Y + ++LF M G
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387
Query: 423 DDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQF 482
D T S++ +C+ L G+QLHA K A+N + AL+++YAK +E A F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447
Query: 483 ERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLP 542
+ ++ V WN ++V Y D+ +F +FR+M + IVP+ + SIL C + L
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507
Query: 543 QGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGY 602
GEQ+H +KT+ + N YV S LIDMY K G + A +L ++VVS +IAGY
Sbjct: 508 LGEQIHSQIIKTNFQL-NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566
Query: 603 AQNNVED-AVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDD 661
Q N +D A+ +R M G+ +++ T+ + AC G G QIH G D
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDL 626
Query: 662 DFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMR 721
F + AL+++Y + ++ L F E + W A++SG Q+ +N EAL + M
Sbjct: 627 PFQN-ALVTLYSRCGKIEESYLAF-EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684
Query: 722 SHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781
+ + TF S ++A + ++++ G ++H++I TGYD + +ALI MYAKCG +
Sbjct: 685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 782 RSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTAC 841
+ + F E++ +N V SWN++I ++K+G+ +AL F +M + P+ VT +GVL+AC
Sbjct: 745 DAEKQFLEVSTKNEV-SWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 803
Query: 842 SHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRI 901
SH G V +G FE+M S +G+ P+ +H C+VD+L R G L A+EFI+++ +PD+ +
Sbjct: 804 SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALV 863
Query: 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961
W TLL AC VH++ G AA L+ELEPE+ + YV LSN+YA W+ + R++M+E
Sbjct: 864 WRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKE 923
Query: 962 KGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESY 1011
KGVKK PG SWI + + + F GD +HP AD I +DLT + Y
Sbjct: 924 KGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 973
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 5.1e-123, Sum P(2) = 5.1e-123
Identities = 238/670 (35%), Positives = 380/670 (56%)
Query: 355 YSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFA 414
+ N +++I+ + K + SA+ +FD++ +R V W L+G Y++N + E LF
Sbjct: 76 HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135
Query: 415 M--KSSGFHADDFTYTSILSSCA-CLEYLEMGRQLHAVIIKNKLATN--LYVGNALVDMY 469
M SS D T+T++L C + +G Q+HA +K TN L V N L+ Y
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVG-QVHAFAVKLGFDTNPFLTVSNVLLKSY 194
Query: 470 AKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSA 529
+ R L+ A FE I +D+V++N +I GY ++G E+ ++F +M G P D + +
Sbjct: 195 CEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFS 254
Query: 530 SILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ 589
+L A + G+Q+H SV T + + VG+ ++D Y K + + MP+
Sbjct: 255 GVLKAVVGLHDFALGQQLHALSVTTGF-SRDASVGNQILDFYSKHDRVLETRMLFDEMPE 313
Query: 590 RNVVSMNALIAGYAQ-NNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQI 648
+ VS N +I+ Y+Q + E ++ +R MQ G + F ++L +G Q+
Sbjct: 314 LDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Query: 649 HCLIVKKGLLFDDDFLHI--ALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQ 706
HC + L D LH+ +L+ MY + +A L+F P ++TV WTA+ISG+ Q
Sbjct: 374 HCQAL---LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQ-RTTVSWTALISGYVQ 429
Query: 707 NDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEI- 765
+ L + +MR N+ DQ+TF +VL+A A +SL G ++H+ I +G +L+ +
Sbjct: 430 KGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-NLENVF 488
Query: 766 TGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKET 825
+GS L+DMYAKCG +K + QVF+EM +RN +SWN++I A NG E A+ F +M E+
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDRN-AVSWNALISAHADNGDGEAAIGAFAKMIES 547
Query: 826 QAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKE 885
PD V+ LGVLTACSH G V +G + F+ M +GI P+ H ACM+DLLGR G E
Sbjct: 548 GLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAE 607
Query: 886 AEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP-ENPSPYVQLSNIYA 944
AE+ ++++ FEPD +W+++L AC +H++ AA+KL +E + + YV +SNIYA
Sbjct: 608 AEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYA 667
Query: 945 ALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTA 1004
A G W +V +++ MRE+G+KK P SW+ + + F + D +HPN D I + +LTA
Sbjct: 668 AAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTA 727
Query: 1005 SMEKESYFPE 1014
+E+E Y P+
Sbjct: 728 EIEREGYKPD 737
|
|
| TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 253/721 (35%), Positives = 397/721 (55%)
Query: 292 NVMISGHAKRGYDAEAVNYFKRMRK-AGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAI 350
N I+ K + EA+ F +K + K T S++ SS +L G +H +
Sbjct: 35 NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94
Query: 351 KQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVD 410
+ + + +++MY KC + A++VFD + ERN V + +++ GYSQN E +
Sbjct: 95 NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154
Query: 411 LFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYA 470
L+ M D F + SI+ +CA + +G+QLHA +IK + +++L NAL+ MY
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214
Query: 471 KSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIV-PDDVSSA 529
+ + +A + F I +D +SW++II G+ Q G FEA + + M G+ P++
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274
Query: 530 SILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ 589
S L AC+++ G Q+H +K+ L N G SL DMY +CGF+ +A +V + +
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSEL-AGNAIAGCSLCDMYARCGFLNSARRVFDQIER 333
Query: 590 RNVVSMNALIAGYAQNNVED-AVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQI 648
+ S N +IAG A N D AV ++ M++ G P+ I+ SLL A P G QI
Sbjct: 334 PDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQI 393
Query: 649 HCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQND 708
H I+K G L D + +LL+MY LF +F N +V W +++ Q++
Sbjct: 394 HSYIIKWGFLADLTVCN-SLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHE 452
Query: 709 SNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS 768
E L ++ M PD T ++LR C +SSL+ G ++H TG ++ +
Sbjct: 453 QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKN 512
Query: 769 ALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAM 828
LIDMYAKCG + ++ ++FD M R+ V+SW+++IVG+A++G+ E+AL +F EMK
Sbjct: 513 GLIDMYAKCGSLGQARRIFDSMDNRD-VVSWSTLIVGYAQSGFGEEALILFKEMKSAGIE 571
Query: 829 PDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEE 888
P+ VTF+GVLTACSH G V EG +++ TM + HGI P +HC+C+VDLL R G L EAE
Sbjct: 572 PNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAER 631
Query: 889 FIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948
FI+++ EPD +W TLL AC + + AA+ +++++P N + +V L +++A+ GN
Sbjct: 632 FIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGN 691
Query: 949 WNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEK 1008
W LR M++ VKK PG SWI + + F A D HP D I VL ++ + M
Sbjct: 692 WENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQMLD 751
Query: 1009 E 1009
E
Sbjct: 752 E 752
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 271/783 (34%), Positives = 430/783 (54%)
Query: 248 MIKVGCVPDQVAFVTVINVCFN-LGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAE 306
M K+ D V +I++ + +G + A F ++ N V+WN +IS +++ G
Sbjct: 130 MFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRS 189
Query: 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLI--VHAEAIKQGLYSNVYVASSL 364
A F M+ G + + T GS+++ SL D L+ + K GL ++++V S L
Sbjct: 190 AFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGL 249
Query: 365 INMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADD 424
++ +AK + A+KVF+ ++ RNAV N L+ G + + E LF M S
Sbjct: 250 VSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSP 308
Query: 425 FTYTSILSSCACLEY-------LEMGRQLHAVIIKNKLATNLY-VGNALVDMYAKSRALE 476
+Y +LSS EY L+ GR++H +I L + +GN LV+MYAK ++
Sbjct: 309 ESYVILLSSFP--EYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIA 366
Query: 477 EARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536
+AR+ F + ++D+VSWN++I G Q G EA ++ M I+P + S LS+CA
Sbjct: 367 DARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCA 426
Query: 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMN 596
+++ G+Q+H S+K ++ N+ V ++L+ +Y + G++ K+ S MP+ + VS N
Sbjct: 427 SLKWAKLGQQIHGESLKLGIDL-NVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWN 485
Query: 597 ALIAGYAQN--NVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVK 654
++I A++ ++ +AVV + Q G N ITF+S+L A LG QIH L +K
Sbjct: 486 SIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALK 545
Query: 655 KGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEAL 714
+ D+ AL++ Y +F+ + V W ++ISG+ N+ +AL
Sbjct: 546 NNIA-DEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKAL 604
Query: 715 HFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMY 774
M D + +VL A A +++L G E+H+ + D + GSAL+DMY
Sbjct: 605 DLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMY 664
Query: 775 AKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMK-ETQAMPDDVT 833
+KCG + + + F+ M RN SWNSMI G+A++G E+ALK+F MK + Q PD VT
Sbjct: 665 SKCGRLDYALRFFNTMPVRNSY-SWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVT 723
Query: 834 FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893
F+GVL+ACSHAG + EG + FE+M +G+ PR++H +CM D+LGR G L + E+FIE++
Sbjct: 724 FVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKM 783
Query: 894 TFEPDSRIWTTLLGAC--GVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNE 951
+P+ IW T+LGAC R G+ AA+ L +LEPEN YV L N+YAA G W +
Sbjct: 784 PMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWED 843
Query: 952 VNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESY 1011
+ R++M++ VKK G SW+ + + FVAGD SHP+AD I L++L M Y
Sbjct: 844 LVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGY 903
Query: 1012 FPE 1014
P+
Sbjct: 904 VPQ 906
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
Identities = 268/757 (35%), Positives = 415/757 (54%)
Query: 267 CFNL---GRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSR 323
CF RL A LF + + ++ ++ G ++ G EA F + + G++
Sbjct: 34 CFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDC 93
Query: 324 STLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDS 383
S SVL ++L FG +H + IK G +V V +SL++ Y K + +KVFD
Sbjct: 94 SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153
Query: 384 LDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMG 443
+ ERN V W L+ GY++N EV+ LF M++ G + FT+ + L A G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 444 RQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQE 503
Q+H V++KN L + V N+L+++Y K + +AR F++ + + V+WN++I GY
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273
Query: 504 GDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTS-LETSNIY 562
G EA MF M L + + S AS++ CAN++ L EQ+HC VK L NI
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 563 VGSSLIDMYVKC-GFIGAAH--KVLSCMPQRNVVSMNALIAGYAQNN-VEDAVVLYRGMQ 618
++L+ Y KC + A K + C+ NVVS A+I+G+ QN+ E+AV L+ M+
Sbjct: 334 --TALMVAYSKCTAMLDALRLFKEIGCVG--NVVSWTAMISGFLQNDGKEEAVDLFSEMK 389
Query: 619 TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRN 678
+G+ PN+ T++ +L A P +++H +VK + ALL Y+ +
Sbjct: 390 RKGVRPNEFTYSVILTAL--PVISP--SEVHAQVVKTNYERSST-VGTALLDAYVKLGKV 444
Query: 679 TDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA 738
+A +F+ + K V W+A+++G+AQ A+ + E+ + P++ TF S+L
Sbjct: 445 EEAAKVFSGIDD-KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNV 503
Query: 739 CAVLS-SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVI 797
CA + S+ G + H + D SAL+ MYAK G+++ + +VF E++ ++
Sbjct: 504 CAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD-LV 562
Query: 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETM 857
SWNSMI G+A++G A AL VF EMK+ + D VTF+GV AC+HAG V EG + F+ M
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622
Query: 858 VSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR 917
V I P +H +CMVDL R G L++A + IE + S IW T+L AC VH+
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTEL 682
Query: 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQ 977
GRLAA+K+I ++PE+ + YV LSN+YA G+W E +R+ M E+ VKK PG SWI +
Sbjct: 683 GRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742
Query: 978 NTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPE 1014
T F+AGD SHP D+I LEDL+ ++ Y P+
Sbjct: 743 KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPD 779
|
|
| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 246/751 (32%), Positives = 415/751 (55%)
Query: 271 GRLDEARELFAQM--QNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGS 328
G + ++F ++ + ++ WN +IS + G +A+ ++ +M GV ST
Sbjct: 84 GSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPC 143
Query: 329 VLSGISSLAALDFGLIVHAEAIKQ-GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER 387
++ +L G+ ++ + G+ N +VASSLI Y + K++ K+FD + ++
Sbjct: 144 LVKACVALKNFK-GIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQK 202
Query: 388 NAVLWNALLGGYSQNCYAHE-VVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQL 446
+ V+WN +L GY++ C A + V+ F M+ + T+ +LS CA +++G QL
Sbjct: 203 DCVIWNVMLNGYAK-CGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL 261
Query: 447 HAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDV 506
H +++ + + + N+L+ MY+K ++A K F + D V+WN +I GYVQ G +
Sbjct: 262 HGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLM 321
Query: 507 FEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSS 566
E+ F M G++PD ++ +S+L + + + L +Q+HC+ ++ S+ +I++ S+
Sbjct: 322 EESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISL-DIFLTSA 380
Query: 567 LIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPN 625
LID Y KC + A + S +VV A+I+GY N + D++ ++R + +SPN
Sbjct: 381 LIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPN 440
Query: 626 DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDF-LHIALLSMYMNSKRNTDARLL 684
+IT S+L LG ++H I+KKG FD+ + A++ MY R A +
Sbjct: 441 EITLVSILPVIGILLALKLGRELHGFIIKKG--FDNRCNIGCAVIDMYAKCGRMNLAYEI 498
Query: 685 FTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSS 744
F + + V W ++I+ AQ+D+ A+ +R+M + D + + L ACA L S
Sbjct: 499 FERL-SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPS 557
Query: 745 LRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIV 804
G IH + D + S LIDMYAKCG++K + VF M E+N ++SWNS+I
Sbjct: 558 ESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKN-IVSWNSIIA 616
Query: 805 GFAKNGYAEDALKVFHEMKETQAM-PDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863
+G +D+L +FHEM E + PD +TFL ++++C H G V EG + F +M +GI
Sbjct: 617 ACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGI 676
Query: 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAK 923
QP+ +H AC+VDL GR G L EA E ++ + F PD+ +W TLLGAC +H++ +A+
Sbjct: 677 QPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASS 736
Query: 924 KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFV 983
KL++L+P N YV +SN +A W V +R M+E+ V+K PG SWI + + T+ FV
Sbjct: 737 KLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFV 796
Query: 984 AGDTSHPNADRICAVLEDLTASMEKESYFPE 1014
+GD +HP + I ++L L + E Y P+
Sbjct: 797 SGDVNHPESSHIYSLLNSLLGELRLEGYIPQ 827
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
Identities = 241/729 (33%), Positives = 412/729 (56%)
Query: 287 NVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVH 346
NV WN +I +K G EA+ ++ ++R++ V + T SV+ + L + G +V+
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 347 AEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAH 406
+ + G S+++V ++L++MY++ + A++VFD + R+ V WN+L+ GYS + Y
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 407 EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALV 466
E ++++ +K+S D FT +S+L + L ++ G+ LH +K+ + + + V N LV
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249
Query: 467 DMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDV 526
MY K R +AR+ F+ + +D+VS+N +I GY++ V E+ MF NL PD +
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLL 308
Query: 527 SSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586
+ +S+L AC +++ L + ++ + +K + V + LID+Y KCG + A V +
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST-VRNILIDVYAKCGDMITARDVFNS 367
Query: 587 MPQRNVVSMNALIAGYAQN-NVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLG 645
M ++ VS N++I+GY Q+ ++ +A+ L++ M + IT+ L+ G
Sbjct: 368 MECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFG 427
Query: 646 TQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHA 705
+H +K G+ D + AL+ MY D+ +F+ TV W VIS
Sbjct: 428 KGLHSNGIKSGICIDLSVSN-ALIDMYAKCGEVGDSLKIFSSM-GTGDTVTWNTVISACV 485
Query: 706 QNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEI 765
+ L +MR V+PD ATF+ L CA L++ R G EIH + GY+ +
Sbjct: 486 RFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545
Query: 766 TGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKET 825
G+ALI+MY+KCG ++ S++VF+ M+ R+ V++W MI + G E AL+ F +M+++
Sbjct: 546 IGNALIEMYSKCGCLENSSRVFERMSRRD-VVTWTGMIYAYGMYGEGEKALETFADMEKS 604
Query: 826 QAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKE 885
+PD V F+ ++ ACSH+G V EG FE M + + I P ++H AC+VDLL R + +
Sbjct: 605 GIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISK 664
Query: 886 AEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945
AEEFI+ + +PD+ IW ++L AC D ++++IEL P++P + SN YAA
Sbjct: 665 AEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAA 724
Query: 946 LGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTAS 1005
L W++V+ +R+ +++K + K PG SWI +G+N + F +GD S P ++ I LE L +
Sbjct: 725 LRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSL 784
Query: 1006 MEKESYFPE 1014
M KE Y P+
Sbjct: 785 MAKEGYIPD 793
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
Identities = 254/758 (33%), Positives = 415/758 (54%)
Query: 276 ARELF-AQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGIS 334
A +F +Q ++P W ++ + EAV + M G+K ++L ++
Sbjct: 51 APSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108
Query: 335 SLAALDFGLIVHAEAIKQGL-YSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWN 393
L ++ G +HA K G +V VA++L+N+Y KC + KVFD + ERN V WN
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWN 168
Query: 394 ALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACL---EYLEMGRQLHAVI 450
+L+ ++ F M FT S++++C+ L E L MG+Q+HA
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYG 228
Query: 451 IKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAF 510
++ K N ++ N LV MY K L ++ +D V+WN ++ Q + EA
Sbjct: 229 LR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEAL 287
Query: 511 NMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDM 570
R M L G+ PD+ + +S+L AC++++ L G+++H +++K N +VGS+L+DM
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347
Query: 571 YVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQ-TEGLSPNDIT 628
Y C + + +V M R + NA+IAGY+QN + +A++L+ GM+ + GL N T
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTT 407
Query: 629 FTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF 688
++ AC F IH +VK+GL D F+ L+ MY + A +F +
Sbjct: 408 MAGVVPACVRSGAFSRKEAIHGFVVKRGL-DRDRFVQNTLMDMYSRLGKIDIAMRIFGKM 466
Query: 689 PNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSH-----------NVLPDQATFVSVLR 737
+ + V W +I+G+ ++ + +AL +M++ ++ P+ T +++L
Sbjct: 467 ED-RDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVI 797
+CA LS+L G EIH+ D GSAL+DMYAKCG ++ S +VFD++ ++N VI
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKN-VI 584
Query: 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETM 857
+WN +I+ + +G ++A+ + M P++VTF+ V ACSH+G V EG +IF M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 858 VSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSR-IWTTLLGACGVHRDDI 916
+G++P DH AC+VDLLGR G +KEA + + + + + W++LLGA +H +
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 917 RGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLG 976
G +AA+ LI+LEP S YV L+NIY++ G W++ +RR M+E+GV+K PGCSWI G
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHG 764
Query: 977 QNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPE 1014
+ FVAGD+SHP ++++ LE L M KE Y P+
Sbjct: 765 DEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 257/737 (34%), Positives = 413/737 (56%)
Query: 294 MISGHAKRGYDAEAVNYFKRMRKAGVKSSRS-TLGSVLSGISSLAALDF--GLIVHAEAI 350
+I H G AV+ M + G++ S T S+L S + A DF G +VHA I
Sbjct: 32 LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLK--SCIRARDFRLGKLVHARLI 89
Query: 351 KQGLYSNVYVASSLINMYAKCEKMESAKKVFDSL---DERNAVLWNALLGGYSQNCYAHE 407
+ + + + +SLI++Y+K A+ VF+++ +R+ V W+A++ Y N +
Sbjct: 90 EFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELD 149
Query: 408 VVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKN-KLATNLYVGNALV 466
+ +F G +D+ YT+++ +C+ +++ +GR ++K +++ VG +L+
Sbjct: 150 AIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLI 209
Query: 467 DMYAKSR-ALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD 525
DM+ K + E A K F+++ + V+W +I +Q G EA F M L G D
Sbjct: 210 DMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
Query: 526 VSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKC---GFIGAAHK 582
+ +S+ SACA ++ L G+Q+H +++++ L V SL+DMY KC G + K
Sbjct: 270 FTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRK 326
Query: 583 VLSCMPQRNVVSMNALIAGYAQN-NVE-DAVVLYRGMQTEG-LSPNDITFTSLLDACDGP 639
V M +V+S ALI GY +N N+ +A+ L+ M T+G + PN TF+S AC
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNL 386
Query: 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTA 699
+G Q+ K+GL + + +++SM++ S R DA+ F E + K+ V +
Sbjct: 387 SDPRVGKQVLGQAFKRGLASNSSVAN-SVISMFVKSDRMEDAQRAF-ESLSEKNLVSYNT 444
Query: 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTG 759
+ G +N + +A E+ + TF S+L A + S+R G +IHS + G
Sbjct: 445 FLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLG 504
Query: 760 YDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVF 819
++ +ALI MY+KCG + +++VF+ M RN VISW SMI GFAK+G+A L+ F
Sbjct: 505 LSCNQPVCNALISMYSKCGSIDTASRVFNFMENRN-VISWTSMITGFAKHGFAIRVLETF 563
Query: 820 HEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879
++M E P++VT++ +L+ACSH G VSEG + F +M H I+P+++H ACMVDLL R
Sbjct: 564 NQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCR 623
Query: 880 WGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQL 939
G L +A EFI + F+ D +W T LGAC VH + G+LAA+K++EL+P P+ Y+QL
Sbjct: 624 AGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQL 683
Query: 940 SNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVL 999
SNIYA G W E +RR+M+E+ + K GCSWI +G + F GDT+HPNA +I L
Sbjct: 684 SNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743
Query: 1000 EDLTASMEKESYFPEID 1016
+ L +++ Y P+ D
Sbjct: 744 DRLITEIKRCGYVPDTD 760
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SS83 | PP220_ARATH | No assigned EC number | 0.5795 | 0.9606 | 0.9503 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1017 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-151 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-99 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-93 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-86 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-73 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-63 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-57 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-46 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-44 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-151
Identities = 233/690 (33%), Positives = 380/690 (55%), Gaps = 18/690 (2%)
Query: 338 ALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLG 397
A++ G V + A+ V + +++++M+ + ++ A VF + ER+ WN L+G
Sbjct: 101 AVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160
Query: 398 GYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT 457
GY++ Y E + L+ M +G D +T+ +L +C + L GR++HA +++
Sbjct: 161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL 220
Query: 458 NLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMN 517
++ V NAL+ MY K + AR F+R+ +D +SWNA+I GY + G+ E +F M
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280
Query: 518 LVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFI 577
+ + PD ++ S++SAC + G ++H + VKT ++ V +SLI MY+ G
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSW 339
Query: 578 GAAHKVLSCMPQRNVVSMNALIAGYAQNNVED-AVVLYRGMQTEGLSPNDITFTSLLDAC 636
G A KV S M ++ VS A+I+GY +N + D A+ Y M+ + +SP++IT S+L AC
Sbjct: 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIA--LLSMYMNSKRNTDARLLFTEFPNPKST 694
+G ++H L +KGL+ ++ +A L+ MY K A +F P K
Sbjct: 400 ACLGDLDVGVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDV 455
Query: 695 VLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSL 754
+ WT++I+G N+ +EAL F+R+M + P+ T ++ L ACA + +L G EIH+
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 755 IFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAED 814
+ TG D +AL+D+Y +CG + + F+ + V+SWN ++ G+ +G
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN--SHEKDVVSWNILLTGYVAHGKGSM 572
Query: 815 ALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMV 874
A+++F+ M E+ PD+VTF+ +L ACS +G V++G + F +M + I P + H AC+V
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 875 DLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934
DLLGR G L EA FI ++ PD +W LL AC +HR G LAA+ + EL+P +
Sbjct: 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG 692
Query: 935 PYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADR 994
Y+ L N+YA G W+EV +R+ MRE G+ PGCSW+ + + F+ D SHP
Sbjct: 693 YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKE 752
Query: 995 ICAVLEDLTASME-------KESYFPEIDA 1017
I VLE M+ + S EI+
Sbjct: 753 INTVLEGFYEKMKASGLAGSESSSMDEIEV 782
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 328 bits (842), Expect = 2e-99
Identities = 168/509 (33%), Positives = 272/509 (53%), Gaps = 6/509 (1%)
Query: 508 EAFNMFRRMNLVGIVPDDVSS-ASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSS 566
EA +F + S+ +++ AC ++ + + V+ + E + Y+ +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNR 163
Query: 567 LIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQ-NNVEDAVVLYRGMQTEGLSPN 625
++ M+VKCG + A ++ MP+RN+ S +I G N +A L+R M +G
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 626 DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLF 685
TF +L A G G Q+HC ++K G+ D F+ AL+ MY DAR +F
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGV-VGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 686 TEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSL 745
P K+TV W ++++G+A + + EAL Y EMR V DQ TF ++R + L+ L
Sbjct: 283 DGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 746 RDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVG 805
+ H+ + TG+ LD + +AL+D+Y+K G ++ + VFD M +N +ISWN++I G
Sbjct: 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKN-LISWNALIAG 400
Query: 806 FAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP 865
+ +G A+++F M P+ VTFL VL+AC ++G +G +IF++M H I+P
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 866 RVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKL 925
R H ACM++LLGR G L EA I + F+P +W LL AC +H++ GRLAA+KL
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520
Query: 926 IELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAG 985
+ PE + YV L N+Y + G E + ++ KG+ P C+WI + + + F +G
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSG 580
Query: 986 DTSHPNADRICAVLEDLTASMEKESYFPE 1014
D HP + I L++L + + Y E
Sbjct: 581 DRLHPQSREIYQKLDELMKEISEYGYVAE 609
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (805), Expect = 9e-93
Identities = 174/591 (29%), Positives = 289/591 (48%), Gaps = 46/591 (7%)
Query: 239 EAAFELFEKMIKVGCVPDQVAFVTVINVCFN----------------------------- 269
E A +L E M ++ D+ A+V + +C
Sbjct: 68 EQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127
Query: 270 ------LGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSR 323
G L A +F +M ++ +WNV++ G+AK GY EA+ + RM AGV+
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187
Query: 324 STLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDS 383
T VL + L G VHA ++ G +V V ++LI MY KC + SA+ VFD
Sbjct: 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 384 LDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMG 443
+ R+ + WNA++ GY +N E ++LFF M+ D T TS++S+C L +G
Sbjct: 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307
Query: 444 RQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQE 503
R++H ++K A ++ V N+L+ MY + EA K F R++ +D VSW A+I GY +
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 504 GDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYV 563
G +A + M + PD+++ AS+LSACA + L G ++H + + L S + V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVV 426
Query: 564 GSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGL 622
++LI+MY KC I A +V +P+++V+S ++IAG NN +A++ +R M L
Sbjct: 427 ANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 623 SPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDAR 682
PN +T + L AC G +IH +++ G+ F D FL ALL +Y+ R A
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAW 544
Query: 683 LLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVL 742
F + K V W +++G+ + A+ + M V PD+ TF+S+L AC+
Sbjct: 545 NQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 743 SSLRDGGEIHSLI---FHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEM 790
+ G E + + +L + ++D+ + G + + ++M
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHY--ACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (760), Expect = 2e-86
Identities = 162/533 (30%), Positives = 270/533 (50%), Gaps = 39/533 (7%)
Query: 92 LGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRG 151
LGNA++ ++ + G A VF ++ +RD+ +WN ++ Y+K G F+ + + G
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182
Query: 152 GVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDAR 211
P+ +TF VL C D++ GR++H HV+ GFE ALI MY K +V AR
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242
Query: 212 RVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVC---- 267
VFD D +SW +MI+GY + G ELF M ++ PD + +VI+ C
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 268 -------------------------------FNLGRLDEARELFAQMQNPNVVAWNVMIS 296
+LG EA ++F++M+ + V+W MIS
Sbjct: 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362
Query: 297 GHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYS 356
G+ K G +A+ + M + V T+ SVLS + L LD G+ +H A ++GL S
Sbjct: 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS 422
Query: 357 NVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMK 416
V VA++LI MY+KC+ ++ A +VF ++ E++ + W +++ G N E + F M
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 417 SSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALE 476
+ + T + LS+CA + L G+++HA +++ + + ++ NAL+D+Y + +
Sbjct: 483 LT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541
Query: 477 EARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536
A QF +D VSWN ++ GYV G A +F RM G+ PD+V+ S+L AC+
Sbjct: 542 YAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
Query: 537 NIQGLPQG-EQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP 588
+ QG E H K S+ T N+ + ++D+ + G + A+ ++ MP
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSI-TPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 260 bits (666), Expect = 2e-73
Identities = 142/462 (30%), Positives = 239/462 (51%), Gaps = 6/462 (1%)
Query: 393 NALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIK 452
N+ L + + + L +M+ D+ Y ++ C +E G ++ + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 453 NKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNM 512
+ + + +GNA++ M+ + L A F ++ +D SWN ++ GY + G EA +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 513 FRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYV 572
+ RM G+ PD + +L C I L +G +VH V+ E ++ V ++LI MYV
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE-LDVDVVNALITMYV 233
Query: 573 KCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNV-EDAVVLYRGMQTEGLSPNDITFTS 631
KCG + +A V MP+R+ +S NA+I+GY +N + + L+ M+ + P+ +T TS
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 632 LLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNP 691
++ AC+ LG ++H +VK G D + +L+ MY++ +A +F+
Sbjct: 294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCN-SLIQMYLSLGSWGEAEKVFSRM-ET 351
Query: 692 KSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEI 751
K V WTA+ISG+ +N +AL Y M NV PD+ T SVL ACA L L G ++
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGY 811
H L G + +ALI+MY+KC + ++ +VF + E++ VISW S+I G N
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-VISWTSIIAGLRLNNR 470
Query: 812 AEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQI 853
+AL F +M T P+ VT + L+AC+ G + G++I
Sbjct: 471 CFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (592), Expect = 1e-63
Identities = 132/463 (28%), Positives = 225/463 (48%), Gaps = 41/463 (8%)
Query: 75 RIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKR 134
R +HA ++FGF + NA++ +Y KCG A VFDR+ RD ++WN+++S Y +
Sbjct: 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFEN 266
Query: 135 GSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESS-SFC 193
G + F + P+ T V+SAC D GR++H +V++ GF S C
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 194 KGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGC 253
+LI MY L + +A +VF D VSWT+MI+GY + GLP+ A E + M +
Sbjct: 327 N-SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385
Query: 254 VPDQVAFVTVINVCFNLGRLD-----------------------------------EARE 278
PD++ +V++ C LG LD +A E
Sbjct: 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445
Query: 279 LFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAA 338
+F + +V++W +I+G EA+ +F++M +K + TL + LS + + A
Sbjct: 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGA 504
Query: 339 LDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGG 398
L G +HA ++ G+ + ++ ++L+++Y +C +M A F+S E++ V WN LL G
Sbjct: 505 LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTG 563
Query: 399 YSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQL-HAVIIKNKLAT 457
Y + V+LF M SG + D+ T+ S+L +C+ + G + H++ K +
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623
Query: 458 NLYVGNALVDMYAKSRALEEARKQFERIQ-NQDNVSWNAIIVG 499
NL +VD+ ++ L EA ++ D W A++
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 8e-57
Identities = 103/371 (27%), Positives = 181/371 (48%), Gaps = 7/371 (1%)
Query: 171 DVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGA-----VDLDTVSW 225
+VS + ++ S C I+ +A +F+ L ++
Sbjct: 69 EVSESKDARLDDTQIRKSGVSLCSQ--IEKLVACGRHREALELFEILEAGCPFTLPASTY 126
Query: 226 TSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN 285
+++ + ++ + G PDQ V+ + G L +AR LF +M
Sbjct: 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186
Query: 286 PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIV 345
N+ +W +I G G EA F+ M + G + T +L + L + G +
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246
Query: 346 HAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYA 405
H +K G+ + +V+ +LI+MY+KC +E A+ VFD + E+ V WN++L GY+ + Y+
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306
Query: 406 HEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNAL 465
E + L++ M+ SG D FT++ ++ + L LE +Q HA +I+ ++ AL
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 466 VDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD 525
VD+Y+K +E+AR F+R+ ++ +SWNA+I GY G +A MF RM G+ P+
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 526 VSSASILSACA 536
V+ ++LSAC
Sbjct: 427 VTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 5e-46
Identities = 95/344 (27%), Positives = 169/344 (49%), Gaps = 3/344 (0%)
Query: 295 ISGHAKRGYDAEAVNYFKRMR-KAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQG 353
I G EA+ F+ + ST +++ +L ++ V+ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 354 LYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFF 413
+ Y+ + ++ M+ KC + A+++FD + ERN W ++GG E LF
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 414 AMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSR 473
M G A+ T+ +L + A L G+QLH ++K + + +V AL+DMY+K
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273
Query: 474 ALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILS 533
+E+AR F+ + + V+WN+++ GY G EA ++ M G+ D + + ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 534 ACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVV 593
+ + L +Q H ++T +I ++L+D+Y K G + A V MP++N++
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 594 SMNALIAGYAQNNV-EDAVVLYRGMQTEGLSPNDITFTSLLDAC 636
S NALIAGY + AV ++ M EG++PN +TF ++L AC
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 2e-44
Identities = 119/475 (25%), Positives = 201/475 (42%), Gaps = 70/475 (14%)
Query: 158 TFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGA 217
T+ ++ AC + + ++ HV GFE + ++ M+ K + DARR+FD
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 218 VDLDTVSWTSMIAGYVQAGLPEAAFELFEKM----------------------------- 248
+ + SW ++I G V AG AF LF +M
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 249 ------IKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRG 302
+K G V D +I++ G +++AR +F M VAWN M++G+A G
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 303 YDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVAS 362
Y EA+ + MR +GV + T ++ S LA L+ HA I+ G ++ +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 363 SLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHA 422
+L+++Y+K +ME A+ VFD + +N + WNAL+ GY + + V++F M + G
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 423 DDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQF 482
+ T+ ++LS+C E G ++ + +N K RA+ A
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN--------------HRIKPRAMHYA---- 466
Query: 483 ERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLP 542
+I +EG + EA+ M RR P A++L+AC + L
Sbjct: 467 ------------CMIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLE 511
Query: 543 QGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNA 597
G E N YV L+++Y G A KV+ + ++ + A
Sbjct: 512 LGRLAAEKLYGMGPEKLNNYV--VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 1e-41
Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 35/282 (12%)
Query: 85 GFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSF 144
GF + N ++ ++ KCG+ A ++FD + +R++ +W +I+ G++ F F
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 145 GLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKL 204
+ G TF ++L A + G+QLHC V++ G +F ALIDMY+K
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 205 NNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVI 264
++ DAR VFDG + TV+W SM+AGY G E A L+ +M G DQ F +I
Sbjct: 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332
Query: 265 NVCFNL-----------------------------------GRLDEARELFAQMQNPNVV 289
+ L GR+++AR +F +M N++
Sbjct: 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 290 AWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLS 331
+WN +I+G+ G +AV F+RM GV + T +VLS
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 1e-38
Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 17/340 (5%)
Query: 67 LIRASITS------RIIHAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEKVFDRLEDRD 120
++RAS + +H LK G + A++D+Y+KCG A VFD + ++
Sbjct: 230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289
Query: 121 ILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHC 180
+AWNS+L+ Y+ G E + + + G + FTF+I++ S+ + + +Q H
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349
Query: 181 HVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEA 240
+I GF AL+D+Y+K + DAR VFD + +SW ++IAGY G
Sbjct: 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTK 409
Query: 241 AFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ-----NPNVVAWNVMI 295
A E+FE+MI G P+ V F+ V++ C G ++ E+F M P + + MI
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469
Query: 296 SGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLY 355
+ G EA + +R+A K + + ++L+ L+ G + + G
Sbjct: 470 ELLGREGLLDEA---YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526
Query: 356 S-NVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNA 394
N YV L+N+Y + A KV ++L + + A
Sbjct: 527 KLNNYVV--LLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-12
Identities = 88/463 (19%), Positives = 179/463 (38%), Gaps = 61/463 (13%)
Query: 97 VDLYAKCGIANLAEKVFDRLED---RDILAWNSI-----LSMYSKRGSFENVFKSFGLLC 148
+D Y + + D LED R +L + I K+ + + F+ L+
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 149 NRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVS 208
N P TF +++S C+ S D+ ++ V E G ++ LI AK V
Sbjct: 434 N----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489
Query: 209 DARRVF----DGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVI 264
VF + V+ + ++ ++I G +AG AF + M PD+V F +I
Sbjct: 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
Query: 265 NVCFNLGRLDEARELFAQMQ------NPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAG 318
+ C G +D A ++ A+M+ +P+ + ++ A G A ++ + +
Sbjct: 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYN 609
Query: 319 VKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAK 378
+K + ++ S DF L ++ + K+G+ + S+L+++ ++ A
Sbjct: 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA- 668
Query: 379 KVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLE 438
F+ L + + G +Y+S++ +C+ +
Sbjct: 669 --FEILQD----------------------------ARKQGIKLGTVSYSSLMGACSNAK 698
Query: 439 YLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEAR------KQFERIQNQDNVS 492
+ +L+ I KL + NAL+ + L +A K+ N ++
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT--IT 756
Query: 493 WNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSAC 535
++ ++V ++ D ++ + GI P+ V I C
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 4e-11
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 DTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVC 267
D V++ ++I GY + G E A +LF +M K G P+ + +I+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 5e-11
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 591 NVVSMNALIAGYAQNN-VEDAVVLYRGMQTEGLSPNDITFTSLLDAC 636
+VV+ N LI GY + VE+A+ L+ M+ G+ PN T++ L+D
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 6e-11
Identities = 83/333 (24%), Positives = 138/333 (41%), Gaps = 59/333 (17%)
Query: 568 IDMY---VKCGFIGAAHKVLSCMPQRNVVSMNA------LIAGYAQNNVEDAVVLYRGMQ 618
ID Y ++ G I +L M +R ++ M+ A Q V++A + ++
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 619 TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRN 678
LS TF L+ C ++ L+ + GL D + L+S S +
Sbjct: 434 NPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL-YTTLISTCAKSGK- 487
Query: 679 TDARLLFTEF---------PNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ 729
DA +F F N + + A+I G A+ +A Y MRS NV PD+
Sbjct: 488 VDA--MFEVFHEMVNAGVEANVHT---FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 730 ATFVSVLRACA----------VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779
F +++ AC VL+ ++ E H + D D IT AL+ A G
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMK--AETHPI------DPDHITVGALMKACANAGQ 594
Query: 780 VKRSAQVFDEMAERN-------YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV 832
V R+ +V+ + E N Y I+ NS ++ G + AL ++ +MK+ PD+V
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSC----SQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 833 TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP 865
F ++ HAG + + +I + GI+
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARK-QGIKL 682
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 2e-09
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 796 VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSH 843
V+++N++I G+ K G E+ALK+F+EMK+ P+ T+ ++
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 255 PDQVAFVTVINVCFNLGRLDEARELFAQMQN----PNVVAWNVMISGHAK 300
PD V + T+I+ G+++EA +LF +M+ PNV ++++I G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 6e-08
Identities = 86/417 (20%), Positives = 178/417 (42%), Gaps = 50/417 (11%)
Query: 244 LFEKMIKVGCVP-DQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMIS--GHAK 300
L E M K G + D++ C + EA ++NP + +N+++S ++
Sbjct: 392 LLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQ 451
Query: 301 RGYDAE-AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVY 359
D + A+ + +++AG+K+ +++S + +D V E + G+ +NV+
Sbjct: 452 ---DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 360 VASSLINMYAKCEKMESAKKVFDSLDERNA----VLWNALLGGYSQNCYAHEVVDLFFAM 415
+LI+ A+ ++ A + + +N V++NAL+ Q+ D+ M
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 416 KSSG--FHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSR 473
K+ D T +++ +CA ++ ++++ +I + + V V+ ++
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 474 ALEEARKQFERIQNQ----DNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSA 529
+ A ++ ++ + D V ++A++ GD+ +AF + + GI VS +
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
Query: 530 SILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ 589
S++ AC+N + K +LE +Y I + P
Sbjct: 689 SLMGACSNAKNW-----------KKALE---LYEDIKSIKL----------------RP- 717
Query: 590 RNVVSMNALIAGYAQ-NNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLG 645
V +MNALI + N + A+ + M+ GL PN IT++ LL A + +G
Sbjct: 718 -TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 7e-08
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 489 DNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACAN 537
D V++N +I GY ++G V EA +F M GI P+ + + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGC 253
V++ S+I+GY +AG E A ELF++M + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 6e-07
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 286 PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSG 332
P+VV +N +I G+ K+G EA+ F M+K G+K + T ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-07
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPD 256
V++ ++I G +AG E A ELF++M + G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 388 NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCA 435
+ V +N L+ GY + E + LF MK G + +TY+ ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 797 ISWNSMIVGFAKNGYAEDALKVFHEMKE 824
+++NS+I G+ K G E+AL++F EMKE
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 712 EALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALI 771
EA F + +R+ P +TF ++ CA + + L+ G D + LI
Sbjct: 424 EAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479
Query: 772 DMYAKCGDVKRSAQVFDEMA----ERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827
AK G V +VF EM E N V ++ ++I G A+ G A + M+
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 828 MPDDVTFLGVLTACSHAGRVSEGRQIFETMVS-CHGIQPRVDH 869
PD V F +++AC +G V + M + H I P DH
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP--DH 579
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-05
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 692 KSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA 740
V + +I G+ + EAL + EM+ + P+ T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-05
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 120 DILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSK 168
D++ +N+++ Y K+G E K F + RG PN +T++I++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 83/362 (22%), Positives = 155/362 (42%), Gaps = 22/362 (6%)
Query: 531 ILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP-- 588
++S CA+ Q + +V V+ + ++ + ++LI K G + A +V M
Sbjct: 443 LMSVCASSQDIDGALRVLRL-VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 589 --QRNVVSMNALIAGYAQ-NNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLG 645
+ NV + ALI G A+ V A Y M+++ + P+ + F +L+ AC
Sbjct: 502 GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561
Query: 646 TQIHCLIVKKGLLFDDDFLHI---ALLSMYMNSKRNTDARLLFTEFP--NPKST-VLWTA 699
+ + + D D HI AL+ N+ + A+ ++ N K T ++T
Sbjct: 562 FDVLAEMKAETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619
Query: 700 VISGHAQN-DSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGG-EIHSLIFH 757
++ +Q D ++ AL Y +M+ V PD+ F S L A + D EI
Sbjct: 620 AVNSCSQKGDWDF-ALSIYDDMKKKGVKPDE-VFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 758 TGYDLDEITGSALIDMYAKCGDVKRSAQVFDE---MAERNYVISWNSMIVGFAKNGYAED 814
G L ++ S+L+ + + K++ +++++ + R V + N++I +
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737
Query: 815 ALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMV 874
AL+V EMK P+ +T+ +L A G + GI+P + C C+
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCIT 796
Query: 875 DL 876
L
Sbjct: 797 GL 798
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 289 VAWNVMISGHAKRGYDAEAVNYFKRMRKAGV 319
V +N +ISG+ K G EA+ FK M++ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 491 VSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD 525
V++N +I G + G V EA +F+ M GI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 797 ISWNSMIVGFAKNGYAEDALKVFHEMKE 824
+++N++I G K G E+AL++F EMKE
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKE 28
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 218 VDLDTVSWTSMIAGYVQAGLPEAAFELFEKM 248
+ D V++ ++I G +AG + A EL ++M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 491 VSWNAIIVGYVQEGDVFEAFNMFRRM 516
V++N++I GY + G + EA +F+ M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 5e-04
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 796 VISWNSMIVGFAKNGYAEDALKVFHEMK 823
V+++N++I G + G ++A+++ EM+
Sbjct: 7 VVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 796 VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP 829
+ ++N++++ AK G + AL V EMK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.001
Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 813 EDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCAC 872
+ AL+V ++E D + +++ C+ +G+V ++F MV+ G++ V
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGA 512
Query: 873 MVDLLGRWGFLKEAEEF-----IEQLTFEPDSRIWTTLLGACG----VHRD-DIRGRLAA 922
++D R G + +A F + +PD ++ L+ ACG V R D+ + A
Sbjct: 513 LIDGCARAGQVAKA--FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 923 KKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR---REMREKGVKKFPGCSWIVL 975
E P +P ++ + + A N +V+ + + + E +K P I +
Sbjct: 571 ----ETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERNY---VISWNSMIVGFAK 808
D +T + LID Y K G V+ + ++F+EM +R V +++ +I G K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 0.001
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ 284
G PD V + T+I+ GR+DEA EL +M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.002
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 222 TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVP 255
++ +++ +AG P+ A + E+M G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 289 VAWNVMISGHAKRGYDAEAVNYFKRMRKAGVK 320
V +N +I G K G EA+ FK M++ G++
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1017 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.8 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.77 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.49 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.46 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.44 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.4 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.3 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.27 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.19 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.11 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.04 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.97 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.89 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.68 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.52 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.51 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.46 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.39 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.38 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.26 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.24 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.21 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.17 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.1 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.1 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.07 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.96 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.88 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.88 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.84 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.81 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.79 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.7 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.56 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.49 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.34 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.32 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.21 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.21 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.2 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.14 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.14 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.13 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.1 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.06 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.04 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.97 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.95 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.89 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.8 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.74 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.69 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.59 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.57 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.5 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.43 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.29 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.26 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.19 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.12 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.83 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 95.78 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.75 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 95.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.58 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.53 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.42 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.42 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.39 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.31 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.28 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.21 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.95 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.94 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.65 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.63 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.42 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.16 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.91 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.86 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.84 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.6 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.34 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.3 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.28 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.26 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.26 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.2 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.92 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.87 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.75 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.72 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.67 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.54 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.49 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.26 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.98 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 91.68 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.27 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.21 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.19 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.85 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.65 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.35 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 89.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.28 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.28 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 88.89 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.62 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.23 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.01 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 87.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.55 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.53 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 86.83 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.76 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.71 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.69 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.49 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.14 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.08 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 86.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.99 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.67 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 85.31 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.57 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.48 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.47 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.44 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.38 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 83.22 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 82.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.97 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.72 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.7 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 81.23 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.62 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.62 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 80.53 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-113 Score=1048.70 Aligned_cols=727 Identities=33% Similarity=0.595 Sum_probs=698.5
Q ss_pred CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 001763 118 DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
.++..++|++|++|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 001763 198 IDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR 277 (1017)
Q Consensus 198 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 277 (1017)
|++|+++|+++.|.++|++|.++|+++||+||.+|++.|++++|+++|++|...|
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g------------------------- 182 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG------------------------- 182 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------
Confidence 9999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCc
Q 001763 278 ELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSN 357 (1017)
Q Consensus 278 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 357 (1017)
+.||..||+.++++|+..++++.+.++|..+.+.|+.+|
T Consensus 183 -----------------------------------------~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 183 -----------------------------------------VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred -----------------------------------------CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 677777777777777777888888889999999999999
Q ss_pred hhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcc
Q 001763 358 VYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACL 437 (1017)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (1017)
..++++||.+|+++|++++|.++|++|+++|.++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~ 301 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhh
Q 001763 438 EYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMN 517 (1017)
Q Consensus 438 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 517 (1017)
|+++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|..+|.++||+||.+|++.|++++|+++|++|.
T Consensus 302 g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~ 381 (857)
T PLN03077 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381 (857)
T ss_pred CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHH
Q 001763 518 LVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNA 597 (1017)
Q Consensus 518 ~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~ 597 (1017)
+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.+ +..++++|+++|+++|++++|.++|++|.+
T Consensus 382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------- 452 (857)
T PLN03077 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPE-------- 452 (857)
T ss_pred HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCC--------
Confidence 99999999999999999999999999999999999999998 999999999999999999999999888875
Q ss_pred HHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 001763 598 LIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKR 677 (1017)
Q Consensus 598 li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 677 (1017)
T Consensus 453 -------------------------------------------------------------------------------- 452 (857)
T PLN03077 453 -------------------------------------------------------------------------------- 452 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 001763 678 NTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFH 757 (1017)
Q Consensus 678 ~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 757 (1017)
++.++||+||.+|++.|+.++|+.+|++|.. +++||.+||.+++.+|++.|+++.++++|..+.+
T Consensus 453 --------------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 453 --------------KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred --------------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 4555666666667777777888888888875 5899999999999999999999999999999999
Q ss_pred hCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 001763 758 TGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV 837 (1017)
Q Consensus 758 ~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 837 (1017)
.|+.+|..++++|+++|+++|++++|.++|+.+ .++.+ +||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~-s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV-SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 999999999999999999999999999999999 88888 9999999999999999999999999999999999999999
Q ss_pred HHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 001763 838 LTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 838 ~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
+.+|++.|++++|.++|+.|.+++|+.|+.+||+||+++|+|+|+++||++++++|+++||..+|.+|+++|+.+|+.+.
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999977999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICA 997 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~ 997 (1017)
|+.+++++++++|+++..|+.|+|+|+..|+|++|.++|+.|+++|++|.||||||+++|++|.|++||++||++++||.
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccCCCC
Q 001763 998 VLEDLTASMEKESYFPEID 1016 (1017)
Q Consensus 998 ~l~~l~~~~~~~~~~~~~~ 1016 (1017)
+|++|.++|++.||+|+|+
T Consensus 756 ~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 756 VLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999974
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-90 Score=839.61 Aligned_cols=702 Identities=24% Similarity=0.379 Sum_probs=655.9
Q ss_pred CCCCCcchhHHHHHHHhcCCchhHHHHhcccCC----CCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHH
Q 001763 86 FGSKGLLGNAIVDLYAKCGIANLAEKVFDRLED----RDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAI 161 (1017)
Q Consensus 86 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 161 (1017)
..+++..+|.++..|++.|++++|..+|++|+. |+..+|+.++.++.+.+.++.+..++..+.+.|..++...+++
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 356677899999999999999999999999965 7888999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCC----CCCcchHHHHHHHHHHcCC
Q 001763 162 VLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAV----DLDTVSWTSMIAGYVQAGL 237 (1017)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~ 237 (1017)
++.+|++.|+++.|.++++.|. +||..+||++|.+|++.|++++|.++|++|. .||.+||+.+|.+|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999996 4899999999999999999999999999874 5999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhc
Q 001763 238 PEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKA 317 (1017)
Q Consensus 238 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (1017)
++.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||.++||++|.+|++.|++++|+++|++|.+.
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHH
Q 001763 318 GVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLG 397 (1017)
Q Consensus 318 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 397 (1017)
|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+|++||.+|+++|++++|.++|++|.++|.++||+||.
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhH
Q 001763 398 GYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEE 477 (1017)
Q Consensus 398 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 477 (1017)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCC
Q 001763 478 ARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLE 557 (1017)
Q Consensus 478 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~ 557 (1017)
|.++|++|.++|.++||+||.+|+++|+.++|+.+|++|.. ++.||..||+.+|.+|++.|+++.++++|..+++.|+.
T Consensus 443 A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~ 521 (857)
T PLN03077 443 ALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521 (857)
T ss_pred HHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999985 69999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 558 TSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 558 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
+ +..++++|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|.. +|+++|++|.+.|++||.+||++++.+|
T Consensus 522 ~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 F-DGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred c-cceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 9 9999999999999999999999999999 89999999999999999998 9999999999999999999999999999
Q ss_pred cCCCccchhhHHHHHHH-HhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 637 DGPYKFHLGTQIHCLIV-KKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
++.|++++|.++++.|. +.|+. |+..+|++++++|++.|++++|.+++++|+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------------------------- 652 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKMP-------------------------- 652 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHCC--------------------------
Confidence 99999999999999999 67887 666777777777777777766666666654
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
++||..+|.+|+.+|...++.+.|+...+.+.+..+. +...|..|.++|++.|+|++|.++++.|++++.
T Consensus 653 ---------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 653 ---------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred ---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 4899999999999999999999999999999888776 788899999999999999999999999987544
Q ss_pred h----HHHH-------HHHHHHHhCCCHHHHH----HHHHHHHHCCCCCCh
Q 001763 796 V----ISWN-------SMIVGFAKNGYAEDAL----KVFHEMKETQAMPDD 831 (1017)
Q Consensus 796 ~----~~~~-------~l~~~~~~~g~~~~A~----~~~~~m~~~g~~p~~ 831 (1017)
. .+|. .++.+-..|.+.++.. ++..+|.+.|+.||.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 3 3553 2233334455554443 466677888888875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=757.44 Aligned_cols=526 Identities=32% Similarity=0.586 Sum_probs=516.6
Q ss_pred CCCcccchhhhHHhHhcCCHHHHHHHHHHhhccC-CCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHH
Q 001763 487 NQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVG-IVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGS 565 (1017)
Q Consensus 487 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 565 (1017)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.+ +..+++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHH
Confidence 3567899999999999999999999999998765 78999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccch
Q 001763 566 SLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHL 644 (1017)
Q Consensus 566 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 644 (1017)
.|+++|+++|++++|.++|++|++||+++||++|.+|++.|.. +|+++|++|.+.|+.||..||..++.+|...|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCC
Q 001763 645 GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHN 724 (1017)
Q Consensus 645 a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 724 (1017)
+.+++..+.+.|+. ++..+++.|+++|+++|++++|.++|++|+. +++++||+||.+|++.|+.++|+++|++|.+.|
T Consensus 243 ~~~l~~~~~~~g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 243 GQQLHCCVLKTGVV-GDTFVSCALIDMYSKCGDIEDARCVFDGMPE-KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHhCCC-ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999997 8999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 001763 725 VLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIV 804 (1017)
Q Consensus 725 ~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 804 (1017)
+.||..||++++++|++.|++++|+++|+.+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|.+ +||+||.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~-t~n~lI~ 399 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI-SWNALIA 399 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee-eHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 805 GFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 805 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
||.+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHHHHhcCccCCCC
Q 001763 965 KKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTASMEKESYFPEID 1016 (1017)
Q Consensus 965 ~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 1016 (1017)
+|.||+|||++++++|.|++||++||++++||++|++|..+|++.||+|+++
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999975
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=628.23 Aligned_cols=512 Identities=26% Similarity=0.434 Sum_probs=464.2
Q ss_pred CCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCC-CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHH
Q 001763 117 EDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRG-GVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKG 195 (1017)
Q Consensus 117 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 195 (1017)
..++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 35577899999999999999999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 001763 196 ALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDE 275 (1017)
Q Consensus 196 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 275 (1017)
.|+++|+++|++++|+++|++|..||+++||++|.+|++.|++++|+++|++|.+.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g----------------------- 219 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG----------------------- 219 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-----------------------
Confidence 999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCC
Q 001763 276 ARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLY 355 (1017)
Q Consensus 276 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 355 (1017)
+.||..||..++.+|+..|..+.+.++|..+.+.|+.
T Consensus 220 -------------------------------------------~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 220 -------------------------------------------SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred -------------------------------------------CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 6667777777777777778888888888999999999
Q ss_pred CchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhh
Q 001763 356 SNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCA 435 (1017)
Q Consensus 356 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 435 (1017)
+|..++++||++|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRR 515 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 515 (1017)
+.|.++.|.++|+.|.+.|+.+|..++++|+++|+++|++++|.++|++|.++|.++||+||.+|+++|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhh-hCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchh
Q 001763 516 MNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVK-TSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVS 594 (1017)
Q Consensus 516 m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~ 594 (1017)
|.+.|+.||..||+.++.+|++.|.+++|.++|..+.+ .|+.| +..+|++++++|++.|++++|.++|++|+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------ 489 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP-RAMHYACMIELLGREGLLDEAYAMIRRAP------ 489 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC-CccchHhHHHHHHhcCCHHHHHHHHHHCC------
Confidence 99999999999999999999999999999999999976 68888 99999999999999999999999999887
Q ss_pred HHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 001763 595 MNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMN 674 (1017)
Q Consensus 595 ~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 674 (1017)
++||..+|++++.+|...|+++.|..+++.+.+.+ |.+...|..|+++|++
T Consensus 490 ---------------------------~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~--p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 490 ---------------------------FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNS 540 (697)
T ss_pred ---------------------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC--CCCCcchHHHHHHHHh
Confidence 67788888888888888888888888877776444 6677888888888999
Q ss_pred cCChHHHHHHHhhCCC----CCCceeehhhh-------hhcccCCC----chHHHHHHHHHHHCCCCcCHH
Q 001763 675 SKRNTDARLLFTEFPN----PKSTVLWTAVI-------SGHAQNDS----NYEALHFYREMRSHNVLPDQA 730 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~----~~~~~~~~~li-------~~~~~~g~----~~~A~~~~~~m~~~~~~pd~~ 730 (1017)
.|++++|.++++.|.. ...-.+|..+. .+-..+.+ +++..++..+|.+.|+.||..
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999998888775 12334564332 22111222 344567788889999999854
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=615.82 Aligned_cols=532 Identities=15% Similarity=0.224 Sum_probs=478.3
Q ss_pred CCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcC-CCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHH
Q 001763 152 GVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGF-ESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIA 230 (1017)
Q Consensus 152 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 230 (1017)
..++...|..++..|++.|++++|.++++.|.+.|+ .++..+++.++..|++.|.+++|.++|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 346778899999999999999999999999999996 5677888999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC----CCCccchHHHHHHHhccCCchH
Q 001763 231 GYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ----NPNVVAWNVMISGHAKRGYDAE 306 (1017)
Q Consensus 231 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~ 306 (1017)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999999999999999999999999999999999999999999999999998 4899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHH--hCCCCchhhhHHHHHHHHccCChhHHHHHHhhc
Q 001763 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIK--QGLYSNVYVASSLINMYAKCEKMESAKKVFDSL 384 (1017)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 384 (1017)
|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++++|.. .|+.||..+|++||.+|+++|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987 678999999999999999999999999999999
Q ss_pred CCC----CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhh
Q 001763 385 DER----NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLY 460 (1017)
Q Consensus 385 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 460 (1017)
.+. +..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 864 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHHhhcC----CCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhh
Q 001763 461 VGNALVDMYAKSRALEEARKQFERIQ----NQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536 (1017)
Q Consensus 461 ~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 536 (1017)
+|++||.+|+++|++++|.++|++|. .||.++||.||.+|++.|++++|+++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999995 58999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHH----HHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHH
Q 001763 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMY----VKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVV 612 (1017)
Q Consensus 537 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~ 612 (1017)
+.|+++.|.++|..+.+.|+.| +..+|++|++++ .+++...++...|+.+...+...|+. +|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~p-d~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~-----------~Al~ 833 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS-----------WALM 833 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH-----------HHHH
Confidence 9999999999999999999999 999999999874 34444444444444333233333332 7999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 001763 613 LYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPK 692 (1017)
Q Consensus 613 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 692 (1017)
+|++|++.|+.||..||..++.++...+..+.+..+++.+...+. ++
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~---------------------------------~~ 880 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD---------------------------------SQ 880 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC---------------------------------Cc
Confidence 999999999999999999999655454444444444333322222 26
Q ss_pred CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH
Q 001763 693 STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA 730 (1017)
Q Consensus 693 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 730 (1017)
+..+|+++|.++.+. .++|+.+|++|...|+.|+..
T Consensus 881 ~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred chhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 677888888887432 367999999999999888864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=592.18 Aligned_cols=537 Identities=18% Similarity=0.231 Sum_probs=408.7
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHH
Q 001763 220 LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGC-VPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGH 298 (1017)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 298 (1017)
++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|.+++|..+|+.|..||..+|+.+|.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4566788888888888888888888888888875 467777778888888888888888888888888888888888888
Q ss_pred hccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHH
Q 001763 299 AKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAK 378 (1017)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 378 (1017)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k-------- 519 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR-------- 519 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--------
Confidence 888888888888888888777776666666666666666666666666666655555555555555555554
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHH--hcCC
Q 001763 379 KVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIK--NKLA 456 (1017)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~ 456 (1017)
.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.
T Consensus 520 -----------------------~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~ 576 (1060)
T PLN03218 520 -----------------------AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576 (1060)
T ss_pred -----------------------CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence 455555555556666667777777777777777777777777777777765 4667
Q ss_pred chhhHHHHHHHHhhccCChhHHHHHHhhcCC----CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 001763 457 TNLYVGNALVDMYAKSRALEEARKQFERIQN----QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASIL 532 (1017)
Q Consensus 457 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 532 (1017)
||..+|+++|.+|+++|++++|.++|+.|.+ ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 577 PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI 656 (1060)
T PLN03218 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656 (1060)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7777777777777777777777777777764 345778888888888888888888888888888888888888888
Q ss_pred HHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC----CCCchhHHHHHHHHhhCCch
Q 001763 533 SACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP----QRNVVSMNALIAGYAQNNVE 608 (1017)
Q Consensus 533 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~ 608 (1017)
.+|++.|++++|.+++..+.+.|+.+ +..+|++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|..
T Consensus 657 ~a~~k~G~~eeA~~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 657 DVAGHAGDLDKAFEILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888888888888888888888 99999999999999999999999999995 58999999999999999998
Q ss_pred -HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh
Q 001763 609 -DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687 (1017)
Q Consensus 609 -~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 687 (1017)
+|+++|++|...|+.||..||++++.+|++.|+++.|.+++..+.+.|+. ++..++++++.++.+ ++++|.++.+.
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLIglc~~--~y~ka~~l~~~ 812 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLR--RFEKACALGEP 812 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH--HHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999998 889999999887542 34444444332
Q ss_pred CCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchH
Q 001763 688 FPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITG 767 (1017)
Q Consensus 688 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 767 (1017)
+.. |+. +......+..++|+.+|++|++.|+.||..||..++.++...+..+.+..+++.+...+..++..
T Consensus 813 v~~------f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-- 883 (1060)
T PLN03218 813 VVS------FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-- 883 (1060)
T ss_pred hhh------hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh--
Confidence 221 110 11112223346799999999999999999999999966656666665555555554444444444
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV 832 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 832 (1017)
+|++++.++.+. .++|..+|++|.+.|+.|+..
T Consensus 884 ------------------------------~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 884 ------------------------------NLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred ------------------------------hhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 455555554221 246777777777777777653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-47 Score=477.14 Aligned_cols=845 Identities=12% Similarity=0.010 Sum_probs=712.9
Q ss_pred HHHHHHhcCCchhHHHHhcccC---CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCCh
Q 001763 96 IVDLYAKCGIANLAEKVFDRLE---DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDV 172 (1017)
Q Consensus 96 li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (1017)
....|...|+++.|...|+... ..+...|..+...|.+.|++++|...|+++.+.+.. +......+..++...|++
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~g~~ 106 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLARAYLLQGKF 106 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHHHHHHCCCH
Confidence 4567788899999999998763 335668888999999999999999999999987653 445566777888899999
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHH
Q 001763 173 SYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMI 249 (1017)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 249 (1017)
+.|...+..............+..+...|.+.|++++|.+.|+.... .+...|..+...+...|++++|.++++++.
T Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999887665334445567788888999999999999999987644 456678889999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhH
Q 001763 250 KVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTL 326 (1017)
Q Consensus 250 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 326 (1017)
... +++...+..+...+...|++++|...|++..+ .+..++..++..+...|++++|...++.+.+.... +....
T Consensus 187 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 264 (899)
T TIGR02917 187 TAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAH 264 (899)
T ss_pred HhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHH
Confidence 865 56778899999999999999999999998864 45667888999999999999999999999885322 22233
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC---CCcchHHHHHHHHHhCC
Q 001763 327 GSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE---RNAVLWNALLGGYSQNC 403 (1017)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 403 (1017)
......+...|+++.|...+..+.+.+.. +...+..+...+...|++++|...|+.+.+ .+...+..+...+...|
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCC
Confidence 33333456789999999999999887644 233444556778899999999999998754 35567888889999999
Q ss_pred ChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHh
Q 001763 404 YAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFE 483 (1017)
Q Consensus 404 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 483 (1017)
++++|+..+.++.+.. ..+...+..+...+...|++++|...++.+.+... .+...+..+...+...|++++|...|+
T Consensus 344 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9999999999987653 34566777888889999999999999999887642 356677788888999999999999999
Q ss_pred hcCCC---CcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc
Q 001763 484 RIQNQ---DNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN 560 (1017)
Q Consensus 484 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~ 560 (1017)
.+... +...+..++..|.+.|++++|+.+++++... ..++..++..+...+...|+.+++.+.+..+++.. |.+
T Consensus 422 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~ 498 (899)
T TIGR02917 422 TAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDF 498 (899)
T ss_pred HHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCc
Confidence 87653 2345667888999999999999999999864 34566788888889999999999999999988754 446
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
...+..++..|...|++++|.+.|+++.. .+..++..+...+.+.|.. +|...|+++...+ +.+...+..+...+
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH
Confidence 77888999999999999999999998864 4566888888889888888 9999999998763 34556778888999
Q ss_pred cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHH
Q 001763 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEAL 714 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 714 (1017)
...|++++|.++++.+.+.. |.+...+..++..|.+.|++++|...|+.+.. |.+...|..++..|.+.|++++|+
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998766 67889999999999999999999999998764 567788999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--
Q 001763 715 HFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-- 792 (1017)
Q Consensus 715 ~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-- 792 (1017)
..|+++.+.. +.+..++..+...+...|++++|..+++.+.+..+. +...+..++..|.+.|++++|.+.|+.+..
T Consensus 656 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 9999998753 345778889999999999999999999999988765 778899999999999999999999998875
Q ss_pred CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHH
Q 001763 793 RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCA 871 (1017)
Q Consensus 793 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 871 (1017)
++.. .+..++..+...|++++|++.++++++. .|+. ..+..+...|...|++++|.++|+++.+. .+++...+.
T Consensus 734 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~ 808 (899)
T TIGR02917 734 PSSQ-NAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLN 808 (899)
T ss_pred CCch-HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 4444 7888999999999999999999999995 4554 68888999999999999999999999873 244677899
Q ss_pred HHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
.+..++...|+ ++|++.+++. ...| ++..|..++.++...|++++|...++++++++|.++.++..++++|.+.|++
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence 99999999999 8899999886 4455 5568888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001763 950 NEVNTLRREMR 960 (1017)
Q Consensus 950 ~~a~~~~~~m~ 960 (1017)
++|.+++++|.
T Consensus 888 ~~A~~~~~~~~ 898 (899)
T TIGR02917 888 AEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHh
Confidence 99999999886
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=452.67 Aligned_cols=826 Identities=10% Similarity=0.034 Sum_probs=696.7
Q ss_pred CchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHH
Q 001763 120 DILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALID 199 (1017)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 199 (1017)
+...+-.....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.+.. +......+..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 98 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKD-PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYP-KNQVLPLLAR 98 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-hhhhHHHHHH
Confidence 44455567788889999999999999998753 345667777888899999999999999999998764 4556677888
Q ss_pred HHHcCCCchhHHHhhhcCCC----CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHH
Q 001763 200 MYAKLNNVSDARRVFDGAVD----LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDE 275 (1017)
Q Consensus 200 ~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 275 (1017)
.|...|++++|..++..... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~ 177 (899)
T TIGR02917 99 AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDE 177 (899)
T ss_pred HHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHH
Confidence 99999999999999987652 235567888889999999999999999998875 3456788899999999999999
Q ss_pred HHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHh
Q 001763 276 ARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQ 352 (1017)
Q Consensus 276 A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (1017)
|..+++++.+ ++...+..+...+...|++++|...|++..+.. ..+..++..+...+...|+++.|...++.+.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999865 456678888899999999999999999998742 234567778888889999999999999999987
Q ss_pred CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCC---cchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH
Q 001763 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERN---AVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS 429 (1017)
Q Consensus 353 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 429 (1017)
... +..........+...|++++|...|+.+.+.+ ...+..+...+...|++++|...|.+..+.. ..+...+..
T Consensus 257 ~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~ 334 (899)
T TIGR02917 257 APN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRL 334 (899)
T ss_pred CCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 654 33344444556678899999999999876532 3445566778889999999999999988742 234455666
Q ss_pred HHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCC---CcccchhhhHHhHhcCCH
Q 001763 430 ILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQ---DNVSWNAIIVGYVQEGDV 506 (1017)
Q Consensus 430 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 506 (1017)
+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+. +...|..+...+...|++
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCh
Confidence 7778889999999999999988765 345677888999999999999999999988652 345677888899999999
Q ss_pred HHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhc
Q 001763 507 FEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586 (1017)
Q Consensus 507 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 586 (1017)
++|++.|+++......+ ......+...+...|+.+++..++..+.+.. |++..++..++..|...|++++|.+.|++
T Consensus 414 ~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 414 SEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred HHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999998754222 2345556678889999999999999887643 33778899999999999999999999998
Q ss_pred CCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCch
Q 001763 587 MPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDD 662 (1017)
Q Consensus 587 ~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~ 662 (1017)
+.+ .+...+..+...+...|.. +|.+.|+++...+ +.+..++..+...+...|+.+++...+..+.+.+ |.+.
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 567 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEI 567 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccch
Confidence 754 3455677778888888887 9999999998863 3456788888888899999999999999998876 6788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh
Q 001763 663 FLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA 740 (1017)
Q Consensus 663 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 740 (1017)
..+..++..|.+.|++++|..+++.+.. |.+...|..++.+|.+.|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 8999999999999999999999998865 5677899999999999999999999999998753 335667888889999
Q ss_pred ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHH
Q 001763 741 VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKV 818 (1017)
Q Consensus 741 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 818 (1017)
..|++++|...++.+.+..+. +...+..++..+...|++++|.++++.+.. ++....|..++..+...|++++|++.
T Consensus 647 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999988765 788999999999999999999999999876 33334788899999999999999999
Q ss_pred HHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCC-
Q 001763 819 FHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFE- 896 (1017)
Q Consensus 819 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~- 896 (1017)
|+++.+. .|+..++..++.++.+.|++++|.+.++.+.+. .+.+...+..++.+|.+.|++++|.+.++++ ...
T Consensus 726 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 726 YRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999994 577777888999999999999999999999883 3445678889999999999999999999986 344
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 897 PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 897 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+++.++..++..+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.+..
T Consensus 802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 467789999999999999 88999999999999999999999999999999999999999999987653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-25 Score=281.31 Aligned_cols=663 Identities=11% Similarity=0.037 Sum_probs=429.7
Q ss_pred HHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 001763 194 KGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNL 270 (1017)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 270 (1017)
.-..+..+-..++.+.|++.+++... .|+..+..++..+.+.|+.++|.+.+++..+.. |+...+..+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~--- 105 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTM--- 105 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHH---
Confidence 34455566677777777777765432 345566777777777777777777777777654 3222221100000
Q ss_pred CCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh-HHHHHHHHhcccchhHHHHHHHHH
Q 001763 271 GRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST-LGSVLSGISSLAALDFGLIVHAEA 349 (1017)
Q Consensus 271 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~ 349 (1017)
....|+......+...+.+.|++++|++.|+++.+.+ .|+... ...........++.+.|...++.+
T Consensus 106 -----------~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 106 -----------LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred -----------HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 0011222222334445666777777777777776531 222111 111111122346677777777777
Q ss_pred HHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChh-cHH
Q 001763 350 IKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDF-TYT 428 (1017)
Q Consensus 350 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 428 (1017)
++..+. +...+..+...+...|+.++|++.|+++...... ....+...+..+...+..++.. .+.
T Consensus 174 l~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 174 NADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred HHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHH
Confidence 766543 5566777888888888888888888876543211 0111111222222222222211 122
Q ss_pred HHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC--C-CcccchhhhHHhHhcCC
Q 001763 429 SILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN--Q-DNVSWNAIIVGYVQEGD 505 (1017)
Q Consensus 429 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 505 (1017)
..+..+........+...+.........|... .......+...|++++|+..|++..+ | +...+..+...|.+.|+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~ 318 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGD 318 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 22222333333444555554443332233221 12334556778999999999988764 2 45678888889999999
Q ss_pred HHHHHHHHHHhhccCCCCCccc---HHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 001763 506 VFEAFNMFRRMNLVGIVPDDVS---SASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHK 582 (1017)
Q Consensus 506 ~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 582 (1017)
+++|+..|++..+. .|+... +..++... .......+.+.+.+.|++++|..
T Consensus 319 ~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~------------------------~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 319 RARAVAQFEKALAL--DPHSSNRDKWESLLKVN------------------------RYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHHHHHHHHHHh--CCCccchhHHHHHHHhh------------------------hHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999998764 333211 11111000 11112233555666777777777
Q ss_pred HHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCC-hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCc
Q 001763 583 VLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPN-DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDD 661 (1017)
Q Consensus 583 ~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~ 661 (1017)
.|+++.. . .|+ ...+..+...+...|++++|.+.+..+++.. |.+
T Consensus 373 ~~~~Al~------------------------------~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~ 418 (1157)
T PRK11447 373 LYQQARQ------------------------------V--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGN 418 (1157)
T ss_pred HHHHHHH------------------------------h--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 6665542 1 222 2333444445555566666666666666554 566
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCC--C---------CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-H
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPNP--K---------STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-Q 729 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~ 729 (1017)
...+..++.+|. .++.++|...++.++.. . ....+..+...+...|++++|++.|++.++. .|+ .
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~ 495 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSV 495 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 666777777774 45678888888776530 0 0123455677788899999999999999885 454 4
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh----h--------H
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY----V--------I 797 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~--------~ 797 (1017)
..+..+...+...|++++|...++.+++..+. ++..+..+...+...|+.++|+..++.+..... . .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 56677888999999999999999999987765 677777788888899999999999998865221 1 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 875 (1017)
.+..++..+...|+.++|+++++. .|+ ...+..+...+.+.|++++|+..|+++++ ..| +...+..++.
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~ 645 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIE 645 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 123567788999999999999872 344 35677889999999999999999999988 455 4677889999
Q ss_pred hhhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcC
Q 001763 876 LLGRWGFLKEAEEFIEQLT-FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS------PYVQLSNIYAALG 947 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~------~~~~l~~~y~~~g 947 (1017)
+|...|++++|++.+++.. ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 9999999999999999864 5554 557777888888999999999999999999876553 5667899999999
Q ss_pred CcHHHHHHHHHHHH
Q 001763 948 NWNEVNTLRREMRE 961 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~ 961 (1017)
++++|++.+++...
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999887753
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-26 Score=286.19 Aligned_cols=588 Identities=12% Similarity=0.050 Sum_probs=402.2
Q ss_pred chHHHHHHHhccCCchHHHHHHHHHHhcCCCCChh-----------------hHHHHHHHHhcccchhHHHHHHHHHHHh
Q 001763 290 AWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRS-----------------TLGSVLSGISSLAALDFGLIVHAEAIKQ 352 (1017)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------------t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (1017)
.+..++..+.+.|+.++|.+.++++.+ +.|+.. ......+.+...|++++|.+.++.+.+.
T Consensus 64 ~~~~~~~~~l~~g~~~~A~~~l~~l~~--~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~ 141 (1157)
T PRK11447 64 VIAARFRLLLRQGDSDGAQKLLDRLSQ--LAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNG 141 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC
Confidence 344444444455555555555555554 333332 2233444567778888888888888765
Q ss_pred CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCC---CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH
Q 001763 353 GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER---NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS 429 (1017)
Q Consensus 353 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 429 (1017)
...........+.......|+.++|++.++++.+. +...+..+...+...|+.++|+..|+++.+.. +..
T Consensus 142 ~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~~----- 214 (1157)
T PRK11447 142 APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AGR----- 214 (1157)
T ss_pred CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cch-----
Confidence 43322111111112223457888888888877653 45567777788888888888888888876531 110
Q ss_pred HHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhccCChhHHHHHHhhcCCC--Ccc-cchhhhHHhHhcCC
Q 001763 430 ILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKSRALEEARKQFERIQNQ--DNV-SWNAIIVGYVQEGD 505 (1017)
Q Consensus 430 ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~ 505 (1017)
...+...+..+...+..+ ....+...+..+-....++.|...+.+.... |.. ........+...|+
T Consensus 215 ----------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 215 ----------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred ----------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 011111112221111111 1122233333333334455565555543221 111 11233455667788
Q ss_pred HHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 001763 506 VFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLS 585 (1017)
Q Consensus 506 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 585 (1017)
+++|+..|++..+. .|+ +..++..|...|.+.|++++|+..|+
T Consensus 285 ~~~A~~~l~~aL~~--~P~-----------------------------------~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 285 GGKAIPELQQAVRA--NPK-----------------------------------DSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred HHHHHHHHHHHHHh--CCC-----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888877763 343 77788888889999999999998888
Q ss_pred cCCCCCc-----hhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCC
Q 001763 586 CMPQRNV-----VSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 586 ~~~~~~~-----~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
+..+.++ ..|..++... ...........+...|++++|...+..+++.. |.
T Consensus 328 ~Al~~~p~~~~~~~~~~ll~~~----------------------~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~ 383 (1157)
T PRK11447 328 KALALDPHSSNRDKWESLLKVN----------------------RYWLLIQQGDAALKANNLAQAERLYQQARQVD--NT 383 (1157)
T ss_pred HHHHhCCCccchhHHHHHHHhh----------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence 7653211 1232222110 00001112334567899999999999999986 68
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCc--------CHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLP--------DQA 730 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--------d~~ 730 (1017)
+..++..++.+|...|++++|++.|+++.. |.+...+..+...|. .++.++|+.+++++....... ...
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 888999999999999999999999999775 566667777777774 467899999887764321000 012
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHh
Q 001763 731 TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAK 808 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 808 (1017)
.+..+...+...|++++|...++++++..+. ++.++..++.+|.+.|++++|+..++++.. ++....+..+...+..
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~ 541 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3445667788899999999999999998887 778889999999999999999999998865 4444466777777788
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChH---------hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc
Q 001763 809 NGYAEDALKVFHEMKETQAMPDDV---------TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879 (1017)
Q Consensus 809 ~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~ 879 (1017)
.|+.++|+..++++......++.. .+..+...+...|+.++|+++++. .+++...+..+.+.|.+
T Consensus 542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 999999999999875533333221 234566778999999999999872 24456677889999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.|++++|++.+++. ...| +...+..++..+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++
T Consensus 616 ~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999986 4566 566899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCc
Q 001763 958 EMREKGVK 965 (1017)
Q Consensus 958 ~m~~~~~~ 965 (1017)
++.+...+
T Consensus 696 ~al~~~~~ 703 (1157)
T PRK11447 696 RLIPQAKS 703 (1157)
T ss_pred HHhhhCcc
Confidence 98876543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-25 Score=259.30 Aligned_cols=629 Identities=12% Similarity=0.021 Sum_probs=396.5
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccchHHHHHHHhccCCchHHHHHHHH
Q 001763 236 GLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVAWNVMISGHAKRGYDAEAVNYFKR 313 (1017)
Q Consensus 236 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (1017)
|++++|+..|++..+.. +-+...+..+...|.+.|+.++|+..+++..+ |+-..|..++..+ +++++|..+|++
T Consensus 58 Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEE 133 (987)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHH
Confidence 66666666666666654 22244555556666666666666666555543 3222222222111 555555555555
Q ss_pred HHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHH--------HHccCChhHHHHHHhhcC
Q 001763 314 MRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINM--------YAKCEKMESAKKVFDSLD 385 (1017)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~ 385 (1017)
+.+ ..|+ +..++..+... |.+.+...++++ .+..
T Consensus 134 l~~--~~P~----------------------------------n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~ 175 (987)
T PRK09782 134 LLA--QQKA----------------------------------CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATF 175 (987)
T ss_pred HHH--hCCC----------------------------------ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--Hhhh
Confidence 554 2332 33333333333 555555555554 2222
Q ss_pred CCC--cc-hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHH
Q 001763 386 ERN--AV-LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVG 462 (1017)
Q Consensus 386 ~~~--~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 462 (1017)
.++ .. ..-.+...|.+.+++++|++++.++.+.+..... -...+-.+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~-~~~~L~~a----------------------------- 225 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAA-ERRQWFDV----------------------------- 225 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHH-----------------------------
Confidence 222 22 2333367777777777777777777765422211 12222222
Q ss_pred HHHHHHhhc-cCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCC-CCcccHHHHHHHhhcccC
Q 001763 463 NALVDMYAK-SRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIV-PDDVSSASILSACANIQG 540 (1017)
Q Consensus 463 ~~li~~~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~a~~~~~~ 540 (1017)
|.. .++ +.+..+++...+.+...+..+...|.+.|+.++|.++++++...-.. |+..++.-.+.- .+.
T Consensus 226 ------y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r---~~~ 295 (987)
T PRK09782 226 ------LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSK---YSA 295 (987)
T ss_pred ------HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHh---ccC
Confidence 222 122 44444444322334445555666666666666666666665543222 444444433322 222
Q ss_pred CCc-chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHh--h-CCchHHHHHHHH
Q 001763 541 LPQ-GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYA--Q-NNVEDAVVLYRG 616 (1017)
Q Consensus 541 ~~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~-~~~~~A~~l~~~ 616 (1017)
... +..-+.. .+.+.-....-.+++.+.+.+.++.|.++.+.-+ .+.. ..+.... . .+..++.+.++.
T Consensus 296 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 296 NPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP-ANEM---LEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred chhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC-cchH---HHHHHhhccccCchhHHHHHHHH
Confidence 210 0000000 1111022233445899999999998888755332 2221 2222222 2 233388888888
Q ss_pred HHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCChHH---HHHH--------
Q 001763 617 MQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK-GLLFDDDFLHIALLSMYMNSKRNTD---ARLL-------- 684 (1017)
Q Consensus 617 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~-------- 684 (1017)
|.+.. .-+......+-.-....|+.++|.+++...... +-...+......++++|.+.+.+.. |..+
T Consensus 368 ~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 368 LYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 77651 112233323333344678899999998888763 2111345566688899988877322 2222
Q ss_pred -----------------HhhCCC--CC--CceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC
Q 001763 685 -----------------FTEFPN--PK--STVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS 743 (1017)
Q Consensus 685 -----------------~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 743 (1017)
+..... |. +...|..++.++.. +++++|+..|.+.... .|+......+..++...|
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~G 523 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVE 523 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCC
Confidence 111111 44 66778888888877 8999999988888775 577655555556667899
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
++++|...++.+.... |+...+..++.++.+.|++++|...+++....+.. ..+..+.......|++++|+..+++
T Consensus 524 r~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 524 DYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred CHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999876543 34455778888999999999999999988764332 2333344445566999999999999
Q ss_pred HHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-C
Q 001763 822 MKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-D 898 (1017)
Q Consensus 822 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~ 898 (1017)
.++ ..|+...+..+..++.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|++.+++. ...| +
T Consensus 602 AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 602 SLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999 578877889999999999999999999999987 5665 567888899999999999999999885 5667 5
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+..|.+++.++...|+++.|+..++++++++|+++.+....+++..+..+++.|.+.+++.-.-.+.
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 6689999999999999999999999999999999999999999999999999999988766655443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-24 Score=256.25 Aligned_cols=666 Identities=10% Similarity=-0.013 Sum_probs=414.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCc--chHHHHHHHHHHcCChhHHHHHHH
Q 001763 169 SMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDT--VSWTSMIAGYVQAGLPEAAFELFE 246 (1017)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~ 246 (1017)
.|++++|...++.+++..... ..++..|...|.+.|+.++|+..+++..+.|+ .-|..++..+ +++++|..+++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 377777777777777765333 66777788888888888888888877665333 2233323222 88888888888
Q ss_pred HHHHcCCCCChhhHHHHHHH--------HhccCCHHHHHHHHHhcCCCC--ccchHH-HHHHHhccCCchHHHHHHHHHH
Q 001763 247 KMIKVGCVPDQVAFVTVINV--------CFNLGRLDEARELFAQMQNPN--VVAWNV-MISGHAKRGYDAEAVNYFKRMR 315 (1017)
Q Consensus 247 ~m~~~g~~p~~~t~~~li~~--------~~~~g~~~~A~~~~~~m~~~~--~~~~~~-li~~~~~~g~~~~A~~~~~~m~ 315 (1017)
++.... +-+...+..+... |.+.++..++++ .+...|+ ...... +...|.+.|++++|++++.++.
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 888765 3334445444444 666655555555 3333333 333333 3677777777777777777777
Q ss_pred hcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHc-cCChhHHHHHHhhcCCCCcchHHH
Q 001763 316 KAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAK-CEKMESAKKVFDSLDERNAVLWNA 394 (1017)
Q Consensus 316 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 394 (1017)
+.+... ......|..+|.. .++ +.+..+++...+.+...+..
T Consensus 210 k~~pl~------------------------------------~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~a 252 (987)
T PRK09782 210 QQNTLS------------------------------------AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRIT 252 (987)
T ss_pred hcCCCC------------------------------------HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHH
Confidence 753222 2222333344444 244 55666655433456666777
Q ss_pred HHHHHHhCCChhHHHHHHHhhhhcCCC-CChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhcc
Q 001763 395 LLGGYSQNCYAHEVVDLFFAMKSSGFH-ADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKS 472 (1017)
Q Consensus 395 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 472 (1017)
+...|.+.|+.++|..+++++...-.. |+..++..++.-..... ..+..-+.. .+.+ -....-.++..+.+.
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP--VQALANYTV----QFADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch--hhhccchhh----hhHHHHHHHHHHHHHHHHhc
Confidence 777777777777777777776543222 44544444433222111 001111110 0001 111223346777888
Q ss_pred CChhHHHHHHhhcCCCCcccchhhhH--HhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHH
Q 001763 473 RALEEARKQFERIQNQDNVSWNAIIV--GYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCF 550 (1017)
Q Consensus 473 g~~~~A~~~f~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~ 550 (1017)
+.++.+.++.+ ....+. . ..+. +....+...++...++.|.+. .|.
T Consensus 327 ~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~--~~~-------------------------- 374 (987)
T PRK09782 327 GQYDAAQKLLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQ--EPA-------------------------- 374 (987)
T ss_pred cHHHHHHHHhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhc--CCC--------------------------
Confidence 88887776633 221122 1 1222 122335555666666666553 121
Q ss_pred HhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CC----chhHHHHHHHHhhCCc---h-HHHHHHHHHHHc
Q 001763 551 SVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RN----VVSMNALIAGYAQNNV---E-DAVVLYRGMQTE 620 (1017)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~---~-~A~~l~~~m~~~ 620 (1017)
+.....-+.-...+.|+.++|..+|...-. ++ ...-+-++..|...+. . +++.+-..+-..
T Consensus 375 ---------~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 375 ---------NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred ---------CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 333344444445566666666666665543 11 1122344455554433 1 333332211111
Q ss_pred CCCCChHHHHHHHHhccCCCccchhhHHHHHHHH-hCCCCC--chHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceee
Q 001763 621 GLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVK-KGLLFD--DDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLW 697 (1017)
Q Consensus 621 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 697 (1017)
+- |.-.|....+......... .+..|+ +...+..++.++.. ++.++|...+.+... ..+..|
T Consensus 446 -------~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~-~~Pd~~ 510 (987)
T PRK09782 446 -------EQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ-RQPDAW 510 (987)
T ss_pred -------hh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH-hCCchH
Confidence 11 1112233333333333222 223356 78888888888887 788888887766554 112244
Q ss_pred hhhhhhc--ccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 698 TAVISGH--AQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 698 ~~li~~~--~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
+.+..++ .+.|++++|+..|+++... .|+...+..+..++...|+.++|...+..+++.++. +...+..+...+.
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 5554444 5889999999999987654 455556667777888899999999999998887654 3344444445555
Q ss_pred hcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQ 852 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 852 (1017)
+.|++++|...+++... |+.. .|..++..+.+.|++++|+..+++.++ ..|+. ..+..+..++...|++++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~~~-a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPSAN-AYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66999999999998875 5544 889999999999999999999999999 57876 567778888999999999999
Q ss_pred HHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 853 IFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RIWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 853 ~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
.|++.++ +.|+ ...+..+..+|.+.|++++|++.+++. ...|+. .+............+++.+...+++....+
T Consensus 665 ~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 665 MLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999987 4554 567888999999999999999999886 577765 466667777888888999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcH
Q 001763 930 PENPSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 930 p~~~~~~~~l~~~y~~~g~~~ 950 (1017)
|... +....+.++...+++-
T Consensus 742 ~~~~-a~~~~g~~~~~~~~~~ 761 (987)
T PRK09782 742 FDSS-IGLRSGAMSTANNNVG 761 (987)
T ss_pred ccch-hccccchHhhhccccc
Confidence 9777 8888888888777763
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=228.61 Aligned_cols=386 Identities=12% Similarity=0.081 Sum_probs=336.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
-...|..+.+.+-..|++++|...++.+.+ ..+..|..+..++...|.. .|.+.|.+.++ +.|+.....+-+.-
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhH
Confidence 677889999999999999999999998875 3456888888889888887 99999998887 57877665544433
Q ss_pred c-cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchH
Q 001763 636 C-DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYE 712 (1017)
Q Consensus 636 ~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 712 (1017)
+ ...|.+++|...+-++++.. |.-..++..|+-.+-.+|+...|+..|++... |.-..+|-.|+..|...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 3 34688999999988888876 56778899999999999999999999998776 5556789999999999999999
Q ss_pred HHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 713 ALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
|+..|.+.... .|+ .+.+..+...|...|.++.|+..+++.++..+. -+..|+.|.+++-..|+..+|.+.+++..
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 99999998874 666 466777888889999999999999999998876 57899999999999999999999999887
Q ss_pred C--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-
Q 001763 792 E--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV- 867 (1017)
Q Consensus 792 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~- 867 (1017)
. ++...+.+.+.+.|...|.+++|..+|...++ +.|.- ..++.|...|-++|++++|+..|+..+. |+|+.
T Consensus 348 ~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fA 422 (966)
T KOG4626|consen 348 RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFA 422 (966)
T ss_pred HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHH
Confidence 6 55556889999999999999999999999999 78887 6889999999999999999999999987 89984
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
..|++|...|-..|+.++|...+.+. .++|... ..++|..+++..|+..+|+..|+.+++++|+.+.+|.+|+..+.-
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 68999999999999999999999886 5888655 788999999999999999999999999999999999999999998
Q ss_pred cCCcHHHHHHHH
Q 001763 946 LGNWNEVNTLRR 957 (1017)
Q Consensus 946 ~g~~~~a~~~~~ 957 (1017)
..+|.+-.+..+
T Consensus 503 vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 503 VCDWTDYDKRMK 514 (966)
T ss_pred HhcccchHHHHH
Confidence 899988544333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-25 Score=226.71 Aligned_cols=360 Identities=13% Similarity=0.167 Sum_probs=324.4
Q ss_pred hhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh-HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHH
Q 001763 593 VSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND-ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLS 670 (1017)
Q Consensus 593 ~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~ 670 (1017)
.+|..+...+-..|.. +|+.+++.|++ .+|+- ..|..+..++...|+.+.|.+.+...++.+ |...-+...++.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 4677788888888887 99999999998 46654 689999999999999999999999999988 677888889999
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHH
Q 001763 671 MYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRD 747 (1017)
Q Consensus 671 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~ 747 (1017)
+....|++++|...+.+... |.-.++|+.|+..+-..|+..+|+..|++... +.|+ ...|..|...+...+.+++
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchH
Confidence 99999999999998887654 56679999999999999999999999999987 4676 4678899999999999999
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET 825 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 825 (1017)
|...+.++....+. ...++..|.-.|..+|.+|-|+..+++..+ |+....|+.|.+++...|+..+|+..|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 99999999887776 778889999999999999999999999886 67677999999999999999999999999999
Q ss_pred CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-H
Q 001763 826 QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-I 901 (1017)
Q Consensus 826 g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~ 901 (1017)
+.|+. ...+.|.++|...|+.++|..+|....+ +.|+. ...+++..+|-++|++++|+.-+++. .+.|+.. .
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 67877 6789999999999999999999999987 67774 57899999999999999999999875 7899765 8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+.+++..+...|+++.|+..+.+++..+|-.++++.+|+.+|...|+..+|++-++.......
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999999999999999999987765433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-18 Score=190.50 Aligned_cols=577 Identities=15% Similarity=0.084 Sum_probs=280.4
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHh--cccchhHHHHHHHHHHHhCC--CCchhhhHHHHHHHHccCChhHHHHH
Q 001763 305 AEAVNYFKRMRKAGVKSSRSTLGSVLSGIS--SLAALDFGLIVHAEAIKQGL--YSNVYVASSLINMYAKCEKMESAKKV 380 (1017)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~ 380 (1017)
+.|...|....+. .|+. ....+.++|. ..+++..+..+|..++.... .+|+.+. +..++.++|+.+.|...
T Consensus 147 ~~A~a~F~~Vl~~--sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQ--SPDN-ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhh--CCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHH
Confidence 5666666655542 2221 1222333332 44566666666666554432 3444332 34567788888888888
Q ss_pred HhhcCCCCcchHHHHHHHH---Hh---CCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhc
Q 001763 381 FDSLDERNAVLWNALLGGY---SQ---NCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNK 454 (1017)
Q Consensus 381 ~~~~~~~~~~~~~~li~~~---~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 454 (1017)
|.+..+-|+..-++++... .. ...+..++.++...-.. -.-|++..+.|-..+...|+++.+..+...++...
T Consensus 222 ~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 8877665554433333221 11 12233444444433221 12344455556666666777777777766666554
Q ss_pred CCch--hhHHHHHHHHhhccCChhHHHHHHhhcCC--CCc--ccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccH
Q 001763 455 LATN--LYVGNALVDMYAKSRALEEARKQFERIQN--QDN--VSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSS 528 (1017)
Q Consensus 455 ~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 528 (1017)
.... ...|--+..+|-..|+++.|...|.+... +|. ..+-.+...|.+.|+.+.+...|+...+. .||
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~---- 374 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPN---- 374 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccc----
Confidence 2111 12244456666677777777777766553 222 23445566677777777777777776653 344
Q ss_pred HHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcC----CHHHHHHHHhcCCCC---CchhHHHHHHH
Q 001763 529 ASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCG----FIGAAHKVLSCMPQR---NVVSMNALIAG 601 (1017)
Q Consensus 529 ~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~ 601 (1017)
+..+...|...|...+ ..+.|..+..+...+ |...|-.+...
T Consensus 375 -------------------------------~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 375 -------------------------------NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred -------------------------------hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4555555555555553 455566665555543 23344444444
Q ss_pred HhhCCchHHHHHHHHHH----HcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHh---CCCC-----CchHHHHHHH
Q 001763 602 YAQNNVEDAVVLYRGMQ----TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK---GLLF-----DDDFLHIALL 669 (1017)
Q Consensus 602 ~~~~~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---~~~p-----~~~~~~~~l~ 669 (1017)
+-+.....++..|.... ..+-.+.....+.+....-..|+++.|...+..+... ...+ .+......++
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 44443333344443332 2333333344444444444444444444444433322 0000 0011122333
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHh-HHHHHHHHhccCcHHHH
Q 001763 670 SMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQAT-FVSVLRACAVLSSLRDG 748 (1017)
Q Consensus 670 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t-~~~ll~~~~~~~~~~~a 748 (1017)
.++... ++.+.|.+.|...+.. .|.-+. |..++......++..+|
T Consensus 504 rl~E~l--------------------------------~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 504 RLLEEL--------------------------------HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHhh--------------------------------hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHH
Confidence 333444 4444444555444442 333222 33333222233444444
Q ss_pred HHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----C-ChhHHHHHHHHHHH------------hCCC
Q 001763 749 GEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----R-NYVISWNSMIVGFA------------KNGY 811 (1017)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~-~~~~~~~~l~~~~~------------~~g~ 811 (1017)
...+..+...+-. ++.++.-+++.|.+..+|.-|.+-|..+.. . |.- +.-+|++.|. ..+.
T Consensus 550 ~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y-sliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 550 SLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY-SLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh-HHHHhhHHHHHHhcccccChHHHHHH
Confidence 4444444443332 444444455555555555544443333322 1 111 2222222221 1223
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHH
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFI 890 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~ 890 (1017)
.++|+++|.+.++ ..|.. ..-++++-.+++.|++++|+.+|.++++. .......|-++..+|..+|++-.|++.+
T Consensus 628 ~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 628 QEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 4555566655555 33433 34455555555666666666666665552 2223444555555555666666666655
Q ss_pred HhCC----CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH-------------------hcC
Q 001763 891 EQLT----FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA-------------------ALG 947 (1017)
Q Consensus 891 ~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~-------------------~~g 947 (1017)
+..- -..++.+...|+.++...|.+.+|..++.+++.+.|.|+...++++-+.. ..+
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 5421 12244455555555555556666666666666666666555555554433 335
Q ss_pred CcHHHHHHHHHHHHcCC
Q 001763 948 NWNEVNTLRREMREKGV 964 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~~~~ 964 (1017)
..+.|.+++..|...+-
T Consensus 784 ~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 55666677776665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-18 Score=188.14 Aligned_cols=671 Identities=14% Similarity=0.102 Sum_probs=401.9
Q ss_pred CCchhHHHHhccc--CCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCC--CChhhHHH-HHHHhhcCCChhHHHHH
Q 001763 104 GIANLAEKVFDRL--EDRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGV--PNGFTFAI-VLSACSKSMDVSYGRQL 178 (1017)
Q Consensus 104 g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~-ll~~~~~~~~~~~a~~~ 178 (1017)
..+.+|-.+..-+ .+.....|..+-..|.+.|..++.+.+++.-....-. .|..+... .+..++. .-...|...
T Consensus 22 ~~LPD~~ev~~IL~~e~a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laa-y~s~~a~ke 100 (1018)
T KOG2002|consen 22 DQLPDATEVLSILKAEQAPLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAA-YYSQLAMKE 100 (1018)
T ss_pred hcCCChHHHHHHHHHhcCchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3444555555544 2445668999999999999999998887765511100 01111000 0000000 000111111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHH---HHHHHHcCC--hhHHHHHHHHHHHcCC
Q 001763 179 HCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSM---IAGYVQAGL--PEAAFELFEKMIKVGC 253 (1017)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~--~~~A~~~~~~m~~~g~ 253 (1017)
-..-.+ ...+..|..+|+.....+...+..+ -..|...|. ++.|...|....+..
T Consensus 101 k~~~~k-------------------~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s- 160 (1018)
T KOG2002|consen 101 KKKDEK-------------------DELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS- 160 (1018)
T ss_pred Hhcchh-------------------HHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-
Confidence 111110 0112334444443222111111111 122333333 478888888887764
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccc--hHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh-HHH
Q 001763 254 VPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVA--WNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST-LGS 328 (1017)
Q Consensus 254 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 328 (1017)
++|.-.+.--.......+++..|+.+|..... |...+ .-.+..++.+.|+.+.|...|....+ +.|+... +..
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq--Ldp~~v~alv~ 238 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ--LDPTCVSALVA 238 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh--cChhhHHHHHH
Confidence 55555544444555677899999999988553 22222 22334566688999999999999888 6664322 221
Q ss_pred HHH---HHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCC------cchHHHHHHHH
Q 001763 329 VLS---GISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERN------AVLWNALLGGY 399 (1017)
Q Consensus 329 ll~---~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~ 399 (1017)
|-- .......+..|.+++......... |+.+.+.|.+.|.-.|+++.++.+...+.... ..+|.-+..+|
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 111 112233455666666666655433 77788888888888899988888887765432 23577788888
Q ss_pred HhCCChhHHHHHHHhhhhcCCCCChhcH--HHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccC----
Q 001763 400 SQNCYAHEVVDLFFAMKSSGFHADDFTY--TSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSR---- 473 (1017)
Q Consensus 400 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 473 (1017)
...|++++|...|.+..+ ..||.+++ ..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+
T Consensus 318 Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 888999999888877654 34555433 334455556666666666666665542 223333333344444332
Q ss_pred ChhHHHHHHhhcCCCC---cccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHH
Q 001763 474 ALEEARKQFERIQNQD---NVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCF 550 (1017)
Q Consensus 474 ~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~ 550 (1017)
..+.|..+..+..++. ..+|-.+...|.+ +++..++..|..... .
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d-------------------------------~ 442 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALD-------------------------------I 442 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHH-------------------------------H
Confidence 3444444444444332 2233333333222 222222333333221 1
Q ss_pred HhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHH-HcCCCCChHHH
Q 001763 551 SVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQ-TEGLSPNDITF 629 (1017)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~-~~g~~p~~~t~ 629 (1017)
+...+-.. .+.+.|.+...+...|++++|...|+..... +...|- +.|-.++ +|.
T Consensus 443 L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~----------------------~~~~~n~de~~~~~-lt~ 498 (1018)
T KOG2002|consen 443 LESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFKSALGK----------------------LLEVANKDEGKSTN-LTL 498 (1018)
T ss_pred HHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHHHHhhh----------------------hhhhcCccccccch-hHH
Confidence 11222222 6788888888888899998888888765421 000000 0011111 222
Q ss_pred HH-HHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhccc
Q 001763 630 TS-LLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQ 706 (1017)
Q Consensus 630 ~~-ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~ 706 (1017)
.- +.......++.+.|.+.+..+++.. |.....+..++-+-...+...+|...+..... ..++..|+-++..|..
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 22 2223344467777777777777765 45555555555555555677777777776654 4566777777777777
Q ss_pred CCCchHHHHHHHHHHHC-CCCcCHHhHHHHHHHHhc------------cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 707 NDSNYEALHFYREMRSH-NVLPDQATFVSVLRACAV------------LSSLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~-~~~pd~~t~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
...+..|-+-|+...+. ...+|..+..+|.+.|.. .+..++|.++|.++++..|. |....+.++-+
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiV 655 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIV 655 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhh
Confidence 77777777766665443 224677777777776542 34678899999999998887 88999999999
Q ss_pred HHhcCCHHHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHH
Q 001763 774 YAKCGDVKRSAQVFDEMAERN--YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 850 (1017)
++.+|++++|..+|.++.+.. ...+|-.++.+|...|++..|+++|+..++.-..- +......|..++...|.+.+|
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999888622 22389999999999999999999999988864433 335678899999999999999
Q ss_pred HHHHHHhhhh
Q 001763 851 RQIFETMVSC 860 (1017)
Q Consensus 851 ~~~~~~m~~~ 860 (1017)
.+........
T Consensus 736 k~~ll~a~~~ 745 (1018)
T KOG2002|consen 736 KEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHh
Confidence 9999888773
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-19 Score=210.35 Aligned_cols=250 Identities=14% Similarity=0.049 Sum_probs=200.7
Q ss_pred CCCchHHHHHHHHHHHCC-CCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 707 NDSNYEALHFYREMRSHN-VLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~~-~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
.+++++|++.|++..+.+ ..|+ ...+..+...+...|++++|...++.+++..+. +...|..++.+|...|++++|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 367888999999888764 2343 345666677778899999999999998887765 5668888999999999999999
Q ss_pred HHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhc
Q 001763 785 QVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCH 861 (1017)
Q Consensus 785 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 861 (1017)
..|+++.. ++....|..++..+...|++++|+..|++.++ ..|+. ..+..+..++.+.|++++|+..|+..++
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99987765 34344888899999999999999999999998 56765 5677788888999999999999999887
Q ss_pred CCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HH------HHHHHHH-HHhcCCchHHHHHHHHHHhhCCC
Q 001763 862 GIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RI------WTTLLGA-CGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 862 ~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~------~~~ll~~-~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
..| +...+..+..+|...|++++|++.+++. .+.|+. .+ +...+.. +...|++++|+..++++++++|+
T Consensus 462 -~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 462 -NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred -hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344 4667888899999999999999998874 444431 11 1112222 33469999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 932 NPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 932 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+..++..++++|...|++++|.+.+++..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=202.52 Aligned_cols=301 Identities=13% Similarity=0.099 Sum_probs=228.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC---HHhHHHHHHHHhccC
Q 001763 669 LSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD---QATFVSVLRACAVLS 743 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd---~~t~~~ll~~~~~~~ 743 (1017)
+..+...|++++|...|+++.. |.+..+|..++..+...|++++|+.+++.+...+..++ ..++..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 4445666777777777776654 44555667777777777777777777777776432222 234667777788888
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh-------hHHHHHHHHHHHhCCCHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY-------VISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
++++|..+++.+.+..+. +..++..++.+|.+.|++++|++.++.+.+.+. ...|..++..+...|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888888766443 667788888888888999999888888765221 113556777888899999999
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
..|+++++. .|+. ..+..++..+.+.|++++|.++|+++.+ ..|+ ...+..++.+|.+.|++++|.+.++++
T Consensus 201 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 201 ALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 4654 5677788889999999999999999886 2343 356778889999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh---cCCcHHHHHHHHHHHHcCCccCCc
Q 001763 894 -TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA---LGNWNEVNTLRREMREKGVKKFPG 969 (1017)
Q Consensus 894 -~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~~~~~~~g 969 (1017)
...|+...+..++..+..+|+++.|...++++++.+|++.... .+...+.. .|+.+++..++++|.+++++..|.
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4577777777788889999999999999999999999877544 44444443 569999999999999999999998
Q ss_pred eeEEEEC
Q 001763 970 CSWIVLG 976 (1017)
Q Consensus 970 ~s~i~~~ 976 (1017)
+....-+
T Consensus 355 ~~c~~cg 361 (389)
T PRK11788 355 YRCRNCG 361 (389)
T ss_pred EECCCCC
Confidence 5544333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-18 Score=196.42 Aligned_cols=352 Identities=10% Similarity=0.042 Sum_probs=275.4
Q ss_pred HHcCCHHHHHHHHhcCCCC------CchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccch
Q 001763 572 VKCGFIGAAHKVLSCMPQR------NVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHL 644 (1017)
Q Consensus 572 ~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 644 (1017)
.+..+|+.-.-.|...+++ +..-...++..+.+.|.. +|+.+++........+.. .+..+..++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHH
Confidence 3455565555555555431 122233445566677777 999999988886443333 34444455667899999
Q ss_pred hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 645 GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 645 a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
|.+.++.+++.. |.+..++..++.++.+.|++++|...+++... |.+...|..++..+.+.|++++|+..++++..
T Consensus 95 A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999887 78899999999999999999999999998766 67778899999999999999999999998876
Q ss_pred CCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHH
Q 001763 723 HNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWN 800 (1017)
Q Consensus 723 ~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~ 800 (1017)
.. |+.......+..+...|++++|...++.+++..+.++......++..+.+.|++++|+..++++.. ++....+.
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 53 333222222334778899999999999988776544555566677889999999999999998875 44445888
Q ss_pred HHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHH
Q 001763 801 SMIVGFAKNGYAED----ALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMV 874 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 874 (1017)
.+...|...|++++ |+..|+++++ ..|+. ..+..+..++...|++++|+..+++..+ ..|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 99999999999986 8999999998 56776 5788899999999999999999999987 4555 45677788
Q ss_pred HhhhccCCHHHHHHHHHhCC-CCCCHHHHHH-HHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 875 DLLGRWGFLKEAEEFIEQLT-FEPDSRIWTT-LLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
.+|.+.|++++|++.++++. ..|+...+.. ++.++...|+.++|+..++++++.+|++.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999998863 6676554444 45678889999999999999999999765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-18 Score=196.20 Aligned_cols=327 Identities=10% Similarity=-0.024 Sum_probs=276.6
Q ss_pred HHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcc
Q 001763 628 TFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHA 705 (1017)
Q Consensus 628 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~ 705 (1017)
...-++..+.+.|+++.|..++..++... |.+......++......|++++|...|+++.. |.+...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34456667788899999999999999887 67888888888888999999999999999876 777888999999999
Q ss_pred cCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 706 QNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...+..+....+. +...+..+. .+.+.|++++|+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHHH
Confidence 999999999999999885 555 566778888999999999999999988887775 334444443 478899999999
Q ss_pred HHHHhccCCC---hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH----HHHHHHH
Q 001763 785 QVFDEMAERN---YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE----GRQIFET 856 (1017)
Q Consensus 785 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~----a~~~~~~ 856 (1017)
..++.+...+ ....+..++..+...|++++|+..++++++. .|+. ..+..+..++...|++++ |+..|++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999876632 2224455677889999999999999999984 5765 677889999999999986 8999999
Q ss_pred hhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 857 MVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 857 m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+.+ +.|+ ...+..++.+|.+.|++++|+..+++. ...|+ +.++..++.++...|+++.|+..++++++.+|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 987 4565 567889999999999999999999886 45665 55788888899999999999999999999999998
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
..+..++.+|...|++++|.+.+++..+...+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 88888899999999999999999988776554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-17 Score=191.49 Aligned_cols=271 Identities=12% Similarity=0.094 Sum_probs=200.9
Q ss_pred CChHHHHHHHhhCCC-----CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHH
Q 001763 676 KRNTDARLLFTEFPN-----PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGG 749 (1017)
Q Consensus 676 g~~~~A~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~ 749 (1017)
+++++|.+.|+.... |.....|+.++..+...|++++|+..|++.++. .|+ ..+|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 445555555554432 233445666667777777777777777777764 454 456777777888888888888
Q ss_pred HHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 001763 750 EIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827 (1017)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 827 (1017)
..++.+++..+. +..++..++.+|...|++++|+..|++... |+....|..++..+.+.|++++|+..|++.++ .
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~ 462 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--N 462 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 888888887765 678889999999999999999999998865 44445788889999999999999999999988 4
Q ss_pred CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch--h------HHHHHHhhhccCCHHHHHHHHHhC-CCCC
Q 001763 828 MPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD--H------CACMVDLLGRWGFLKEAEEFIEQL-TFEP 897 (1017)
Q Consensus 828 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~------~~~l~~~l~~~g~~~eA~~~~~~~-~~~p 897 (1017)
.|+. ..+..+..++...|++++|++.|++.++ +.|+.. + ++.....+...|++++|++++++. ...|
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 5765 6788888889999999999999999877 444321 1 112223344579999999999884 5667
Q ss_pred CHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 898 DSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 898 ~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+.. .|..++..+...|++++|+..+++++++.+.....+ ....|.+|.++...+++.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~~ 597 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQED 597 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 554 688888999999999999999999999987644322 223555666666555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=191.16 Aligned_cols=374 Identities=10% Similarity=0.001 Sum_probs=229.2
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
....+..+...+.+.|++++|.+++++... .+...+..+...+...|.. +|+..+++..+. .|+...+..+..+
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~ 125 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYV 125 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 555677777777888888888877777532 2334455555666666666 777777777664 3333225555556
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
+...|+.++|...+..+++.. |.+..++..++.++.+.|..++|.+.++.....|+. . ..++
T Consensus 126 l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~---~-------------~~l~ 187 (765)
T PRK10049 126 YKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAE---K-------------RDLE 187 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHH---H-------------HHHH
Confidence 666677777777777777665 566666666777777777777777777665541110 0 0000
Q ss_pred HHHHHHHCCCCcCHHhH-HHHHHHHhccCcH---HHHHHHHHHHHHhC-CCCCcc--hHhH---HHhHHHhcCCHHHHHH
Q 001763 716 FYREMRSHNVLPDQATF-VSVLRACAVLSSL---RDGGEIHSLIFHTG-YDLDEI--TGSA---LIDMYAKCGDVKRSAQ 785 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~---~~a~~~~~~~~~~~-~~~~~~--~~~~---l~~~y~~~g~~~~A~~ 785 (1017)
. .|..... ..+.......+.+ ++|...++.+++.- ..|+.. .... .+-++...|++++|+.
T Consensus 188 ~---------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~ 258 (765)
T PRK10049 188 A---------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVIS 258 (765)
T ss_pred H---------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0 0000000 0000001111222 44555555554331 111111 1111 1123345577777777
Q ss_pred HHHhccCCC---hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-----HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 786 VFDEMAERN---YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-----VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 786 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
.|+++.+.+ +...-..+...|...|++++|+..|+++++. .|.. .....+..++...|++++|.++++.+
T Consensus 259 ~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~ 336 (765)
T PRK10049 259 EYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHT 336 (765)
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777776532 1111122466777778888888888777663 2322 23455566677778888888887777
Q ss_pred hhhcC----------CCcCc---hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHH
Q 001763 858 VSCHG----------IQPRV---DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAA 922 (1017)
Q Consensus 858 ~~~~~----------~~p~~---~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 922 (1017)
.+... -.|+. ..+..++.++...|++++|++.++++ ...| +...|..++..+...|+.+.|+..+
T Consensus 337 ~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 337 INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 66211 01221 23456677888889999999998886 3445 4558888888888899999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 923 KKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 923 ~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+++++++|+++..++.++.++...|+|++|+++.+.+.+...
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999998888876543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=186.68 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=221.7
Q ss_pred CCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCC------ceeehhhhhhcccCCCch
Q 001763 638 GPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKS------TVLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 638 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~ 711 (1017)
..|++++|...+..+++.+ |.+..++..++..|.+.|++++|...++.+...++ ...|..++..|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4456666666666666654 56677788888888888888888888887665221 135677888888889999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----chHhHHHhHHHhcCCHHHHHHHH
Q 001763 712 EALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE----ITGSALIDMYAKCGDVKRSAQVF 787 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~ 787 (1017)
+|+.+|+++.+.. .++..++..++..+...|++++|.+.++.+.+.++.+.. ..+..++..|.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999988752 345677888888999999999999999988877655322 24567888899999999999999
Q ss_pred HhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC
Q 001763 788 DEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863 (1017)
Q Consensus 788 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 863 (1017)
+++.+ ++....+..++..|.+.|++++|+++|+++.+. .|+. .++..++.+|...|++++|.+.++++.+ .
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~ 278 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---E 278 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence 98875 444447888999999999999999999999984 4543 5678888999999999999999999987 4
Q ss_pred CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHh
Q 001763 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGV---HRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 864 ~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~ 927 (1017)
.|+...+..++.+|.+.|++++|.++++++ ...|+...+..++..+.. +|+.+.+...+++.++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 677777788899999999999999999875 567998888888866443 4577777777776664
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-15 Score=160.59 Aligned_cols=530 Identities=12% Similarity=0.022 Sum_probs=274.5
Q ss_pred CCCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHH
Q 001763 118 DRDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 118 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
.||.+||.++|..||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+|+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456677777777777777777776 7777776666667777777777776666666555 5666777777
Q ss_pred HHHHHcCCCchh---HHHhhhcCCC---C----Ccch---------------HHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 001763 198 IDMYAKLNNVSD---ARRVFDGAVD---L----DTVS---------------WTSMIAGYVQAGLPEAAFELFEKMIKVG 252 (1017)
Q Consensus 198 i~~~~~~g~~~~---A~~~f~~~~~---~----~~~~---------------~~~li~~~~~~g~~~~A~~~~~~m~~~g 252 (1017)
...|...|++.. .++.++.+.. + ..+- -...|.-..-.|.++.+++++..|....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777777777644 1111111000 0 0000 0112222233344444444443332111
Q ss_pred -CCCChhhHHHHHHHHhc-cCCHHHHHHHHHhcCC-CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 001763 253 -CVPDQVAFVTVINVCFN-LGRLDEARELFAQMQN-PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSV 329 (1017)
Q Consensus 253 -~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 329 (1017)
..|..+ +++-+.. ...+++-........+ ++..+|.+++..-..+|+.+.|..++.+|++.|+..+..-|..+
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 001111 1222211 1223333333333333 78888999999999999999999999999999999999988888
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChh---
Q 001763 330 LSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAH--- 406 (1017)
Q Consensus 330 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~--- 406 (1017)
+-+ .++...+..+++-|...|+.|+..|+.--+-...+.|....+.+..+.-.--....+..+..+...+.+.+
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl 322 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNL 322 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHH
Confidence 877 77788888888999999999999988876666655554322222111100001112222222211111111
Q ss_pred --HHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc---hhhHHHHHHHHhhccCChhHHHHH
Q 001763 407 --EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT---NLYVGNALVDMYAKSRALEEARKQ 481 (1017)
Q Consensus 407 --~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 481 (1017)
-.+..+.+..-.|+......|....... .+|.-+...++...+..-.... ++..+..+ +++.
T Consensus 323 ~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------lrqy 389 (1088)
T KOG4318|consen 323 RKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------LRQY 389 (1088)
T ss_pred HHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------HHHH
Confidence 1111222222223332222222222211 1344444444444443211110 11112222 2233
Q ss_pred HhhcCCCCcc-cch--------------hhhHHhHhcCCHHHHHHHHHHhhccC----CC-------CCcccHHHHHHHh
Q 001763 482 FERIQNQDNV-SWN--------------AIIVGYVQEGDVFEAFNMFRRMNLVG----IV-------PDDVSSASILSAC 535 (1017)
Q Consensus 482 f~~~~~~~~~-~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~g----~~-------pd~~t~~~ll~a~ 535 (1017)
|.+...+... .++ ..+.-+..+-+...+++-+..+.... .. |-...-..++-+|
T Consensus 390 Frr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l 469 (1088)
T KOG4318|consen 390 FRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTL 469 (1088)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHH
Confidence 3333222111 111 00000111111111111111111000 00 1111223344444
Q ss_pred hcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCch------hHHHHHHHHhhCCch-
Q 001763 536 ANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVV------SMNALIAGYAQNNVE- 608 (1017)
Q Consensus 536 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~~~~- 608 (1017)
.+..+..++....+.....- -...|..||+.......+++|..+.++...+|.. -+..+.....+.+.-
T Consensus 470 ~se~n~lK~l~~~ekye~~l----f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 470 NSEYNKLKILCDEEKYEDLL----FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 44444333333222221111 2357889999999999999999999998876543 466667777777776
Q ss_pred HHHHHHHHHHHcCCCCC--hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 001763 609 DAVVLYRGMQTEGLSPN--DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT 686 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 686 (1017)
++..++.+|.+.-..-+ ..++-.++......|+.+.-++.++.+...|+.. . .-++....+.++...|+++++
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-t----gPl~~vhLrkdd~s~a~ea~e 620 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-T----GPLWMVHLRKDDQSAAQEAPE 620 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-c----ccceEEEeeccchhhhhhcch
Confidence 89999999987533333 3566667777788888888888888888887651 1 233444555666666665554
Q ss_pred hC
Q 001763 687 EF 688 (1017)
Q Consensus 687 ~~ 688 (1017)
..
T Consensus 621 ~~ 622 (1088)
T KOG4318|consen 621 PE 622 (1088)
T ss_pred HH
Confidence 43
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-15 Score=173.45 Aligned_cols=432 Identities=13% Similarity=0.079 Sum_probs=257.5
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhh---hHHhHhcCCHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAI---IVGYVQEGDVFEAFNM 512 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~ 512 (1017)
+.|+++.|...+.++.+........++ .++..+...|+.++|+..+++...++...+..+ ...|...|++++|+++
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444444444444443322212233 566667777888888888888886655544433 3467777999999999
Q ss_pred HHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCc
Q 001763 513 FRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNV 592 (1017)
Q Consensus 513 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 592 (1017)
|+++.+. .|+ ++.++..++..|...++.++|++.++++...++
T Consensus 125 y~kaL~~--dP~-----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 125 WQSSLKK--DPT-----------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHhh--CCC-----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 9998874 444 677777888999999999999999999876444
Q ss_pred hhHHHHHHHHhh--CCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHH
Q 001763 593 VSMNALIAGYAQ--NNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALL 669 (1017)
Q Consensus 593 ~~~~~li~~~~~--~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~ 669 (1017)
.....+..+|.. .+.. +|++.++++.+.. |.+..++..+.
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-------------------------------------P~n~e~~~~~~ 210 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-------------------------------------PTSEEVLKNHL 210 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHH
Confidence 333234444444 2222 6777777776642 56666666777
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC---cHH
Q 001763 670 SMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS---SLR 746 (1017)
Q Consensus 670 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---~~~ 746 (1017)
....+.|-...|.++.++-+.--+...+.- =+.+.|.+..+-. ..|.. .... -.+
T Consensus 211 ~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~--------l~~~~~a~~vr~a----~~~~~----------~~~~r~~~~d 268 (822)
T PRK14574 211 EILQRNRIVEPALRLAKENPNLVSAEHYRQ--------LERDAAAEQVRMA----VLPTR----------SETERFDIAD 268 (822)
T ss_pred HHHHHcCCcHHHHHHHHhCccccCHHHHHH--------HHHHHHHHHHhhc----ccccc----------cchhhHHHHH
Confidence 777777777777777666553000000000 0011111111111 00100 0001 122
Q ss_pred HHHHHHHHHHHh---CCCCCcchHh---HHHhHHHhcCCHHHHHHHHHhccCCCh-hHHH--HHHHHHHHhCCCHHHHHH
Q 001763 747 DGGEIHSLIFHT---GYDLDEITGS---ALIDMYAKCGDVKRSAQVFDEMAERNY-VISW--NSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 747 ~a~~~~~~~~~~---~~~~~~~~~~---~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~--~~l~~~~~~~g~~~~A~~ 817 (1017)
.|..-++.++.. .++..+.... -.+-++.+.|++.++++.++.++..+. ++.| ..++.+|...++.++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 233333333321 1111111112 233455667778888888887775432 1233 456777777888888888
Q ss_pred HHHHHHHCC----CCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----------CCcCc---hhHHHHHHhhhc
Q 001763 818 VFHEMKETQ----AMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHG----------IQPRV---DHCACMVDLLGR 879 (1017)
Q Consensus 818 ~~~~m~~~g----~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~l~~~l~~ 879 (1017)
+|+++.... ..|+. .....|..+|..++++++|..+.+.+.+.-. -.|++ +.+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 888776632 11222 2345677777788888888888887765211 01222 223445666777
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.|++.+|++.++++ ...| |..++..+...++..|...+|+..++.+..++|++....+.++.++...|+|.+|.++.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888776 2344 556777777778888888888888888888888888888888888888888888877776
Q ss_pred HHHHcCC
Q 001763 958 EMREKGV 964 (1017)
Q Consensus 958 ~m~~~~~ 964 (1017)
.+.+...
T Consensus 509 ~l~~~~P 515 (822)
T PRK14574 509 DVISRSP 515 (822)
T ss_pred HHHhhCC
Confidence 6655433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-13 Score=143.76 Aligned_cols=491 Identities=11% Similarity=0.061 Sum_probs=335.1
Q ss_pred cccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHH
Q 001763 436 CLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNM 512 (1017)
Q Consensus 436 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 512 (1017)
...+.+.|+.++...++.- +.+.. |.-+|++..-++.|.++++...+ .+...|-+-...--.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555554431 11222 33344555666777777766553 3566676666666667777777776
Q ss_pred HHH----hhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc-hHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 001763 513 FRR----MNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN-IYVGSSLIDMYVKCGFIGAAHKVLSCM 587 (1017)
Q Consensus 513 ~~~----m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~~~A~~~~~~~ 587 (1017)
.++ +...|+..+..-|..=..+|...|..-.++.|...++.-|++..+ -.+++.-.+.+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 455688888888888888899899888888888888888877533 346777888888999999999888876
Q ss_pred CC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchH
Q 001763 588 PQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDF 663 (1017)
Q Consensus 588 ~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 663 (1017)
.+ .+...|...+..--.+|.. +-..+|++.... ++-...-|.......-..|++..|+.++..+.+.. |.+..
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnsee 619 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEE 619 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHH
Confidence 64 2334555544443344544 555566666554 22222333333333334455555555555544444 34444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC
Q 001763 664 LHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLS 743 (1017)
Q Consensus 664 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~ 743 (1017)
.|-+-+.....+.++++|-.+|.+... ..|+...|.--+..-..++
T Consensus 620 --------------------------------iwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 620 --------------------------------IWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLD 665 (913)
T ss_pred --------------------------------HHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhh
Confidence 444444444455555555555555544 2455555555555555677
Q ss_pred cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
+.++|.++++..++.-+. -...|-.++..+...++++.|.+.|..-.+ |+..+.|-.+...--+.|+.-+|..++++
T Consensus 666 ~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 788888888777776554 456777888888888888888888876554 66666888888888888888888888888
Q ss_pred HHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHH
Q 001763 822 MKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSR 900 (1017)
Q Consensus 822 m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~ 900 (1017)
.+-. +|+. ..|...+.+=.+.|+.++|.....+.+++ .+-+-.-|.--|.+..+.++-..+.+.+++.. .|+.
T Consensus 745 arlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dph 818 (913)
T KOG0495|consen 745 ARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPH 818 (913)
T ss_pred HHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCch
Confidence 8774 4654 67788888888889999998888888773 34455667777888888888778777777754 4555
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQ 977 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~ 977 (1017)
+..+....++....++.|..-|+++++.+|++..++..+-..+...|.-++-.+++++-... ++.-|..|+-++.
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 66667777888889999999999999999999999999999999999999988888766543 3346888887765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-13 Score=151.93 Aligned_cols=632 Identities=13% Similarity=0.129 Sum_probs=345.7
Q ss_pred CCchhHHHhhhcCCCC---CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001763 205 NNVSDARRVFDGAVDL---DTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFA 281 (1017)
Q Consensus 205 g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 281 (1017)
|++++|.+++.++++. +...|-+|...|-+.|+.+++...+-...... +-|..-|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 8888888888877663 45578888888888888888877665544443 4456778888888888888888888888
Q ss_pred hcCCC---CccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCch
Q 001763 282 QMQNP---NVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNV 358 (1017)
Q Consensus 282 ~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 358 (1017)
+..+. +...+---...|-+.|+...|...|.++.+.....|..-+..++.
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~--------------------------- 284 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIR--------------------------- 284 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHH---------------------------
Confidence 77752 323333445567777888888888888776422111111111111
Q ss_pred hhhHHHHHHHHccCChhHHHHHHhhcCC--C---CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCC----------
Q 001763 359 YVASSLINMYAKCEKMESAKKVFDSLDE--R---NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHAD---------- 423 (1017)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------- 423 (1017)
..++.|...++-+.|.+.++.... . +...++.++..|.+...++.+......+......+|
T Consensus 285 ----~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~ 360 (895)
T KOG2076|consen 285 ----RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERR 360 (895)
T ss_pred ----HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhc
Confidence 122333334444445444444332 1 223455555555555555555555555443111111
Q ss_pred ------------hhcH----HHHHHhhhcccchHhhHHHHHHHHHhc--CCchhhHHHHHHHHhhccCChhHHHHHHhhc
Q 001763 424 ------------DFTY----TSILSSCACLEYLEMGRQLHAVIIKNK--LATNLYVGNALVDMYAKSRALEEARKQFERI 485 (1017)
Q Consensus 424 ------------~~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 485 (1017)
...| ..+.-+.......+....+.....+.. +.-+...+.-+.++|...|++.+|..+|..+
T Consensus 361 ~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i 440 (895)
T KOG2076|consen 361 REEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPI 440 (895)
T ss_pred cccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1111 122223344455555555555555555 3445667777888888888888888888887
Q ss_pred CC----CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCch
Q 001763 486 QN----QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNI 561 (1017)
Q Consensus 486 ~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~ 561 (1017)
.. .+...|--+...|...|.+++|++.|...+. ..|+ +.
T Consensus 441 ~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~-----------------------------------~~ 483 (895)
T KOG2076|consen 441 TNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPD-----------------------------------NL 483 (895)
T ss_pred hcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC-----------------------------------ch
Confidence 64 3456788888888888888888888888776 3454 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCc
Q 001763 562 YVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYK 641 (1017)
Q Consensus 562 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 641 (1017)
.+.-.|...|.+.|+.++|.+.+..+..+|...- ...+..|+........+.+...|+
T Consensus 484 D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~----------------------e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALETLEQIINPDGRNA----------------------EACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch----------------------hhccccHHHHHHHHHHHHHHHhhh
Confidence 7888899999999999999999999876663200 000111111111111122222223
Q ss_pred cchhhHHHHHHHHhCCC---------------------CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhh
Q 001763 642 FHLGTQIHCLIVKKGLL---------------------FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAV 700 (1017)
Q Consensus 642 ~~~a~~~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 700 (1017)
.++-..+...++...+. +........+..+-.+.++.....+-..
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~-------------- 607 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS-------------- 607 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc--------------
Confidence 22222222222211100 0111111111111111111111110000
Q ss_pred hhhcccCCCchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCc----chHhHHHhH
Q 001763 701 ISGHAQNDSNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD-LDE----ITGSALIDM 773 (1017)
Q Consensus 701 i~~~~~~g~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~ 773 (1017)
+. ..+.--...|+.-|. .-+.-++.+..+.+.+++|..+...+.....- .+. ..-...+.+
T Consensus 608 -----------d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~ 675 (895)
T KOG2076|consen 608 -----------DG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKA 675 (895)
T ss_pred -----------ch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHH
Confidence 00 011111111222221 22344455666677777777766655433221 111 223344555
Q ss_pred HHhcCCHHHHHHHHHhccCC-----Ch--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHH--HHHcccC
Q 001763 774 YAKCGDVKRSAQVFDEMAER-----NY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGV--LTACSHA 844 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--~~~~~~~ 844 (1017)
....+++.+|...+..|... ++ ...||...+...++|+-.-=.+.+..+.. .+|+......+ +.-....
T Consensus 676 s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 676 SLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhc
Confidence 56667777777777766543 22 23566655555555543333333333333 23333111112 2223446
Q ss_pred CcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhh----------hccCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLL----------GRWGFLKEAEEFIEQL---TFEP-DSRIWTTLLGAC 909 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l----------~~~g~~~eA~~~~~~~---~~~p-~~~~~~~ll~~~ 909 (1017)
+.+.-|+..|-..-. ..|+ +..--||+-++ .|.-..-.+..++.+. ...- .-.+..+++.+|
T Consensus 754 ~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRay 830 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAY 830 (895)
T ss_pred cchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 667777776666544 4454 33323333222 2222344555555442 2111 233778899999
Q ss_pred HhcCCchHHHHHHHHHHhhCCCC------------CchHHHHHHHHHhcCCcHHHHHHHHH
Q 001763 910 GVHRDDIRGRLAAKKLIELEPEN------------PSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~~p~~------------~~~~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
..-|=...|+..|+++|+..|.+ -.+-++|.-||...|+.+.|.++.++
T Consensus 831 h~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 831 HQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99999999999999999997632 33567889999999999999988753
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-15 Score=164.70 Aligned_cols=671 Identities=12% Similarity=0.057 Sum_probs=334.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCC
Q 001763 142 KSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLD 221 (1017)
Q Consensus 142 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 221 (1017)
.++..|...|+.||.+||.++|..||..|+.+.|- +|..|.-........+++.++.+..+.|+.+.+. .|-
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777788888888888888888888887777 8887777777777778888888777777776665 566
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC-CC-CccchHHHHHHHh
Q 001763 222 TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ-NP-NVVAWNVMISGHA 299 (1017)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~-~~~~~~~li~~~~ 299 (1017)
..+|+.+..+|.+.||... |+...+ ....+...+...|.-.....++..+. .| ....-...+.-..
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 6778888888888877665 222222 11122333333333333333333221 00 0001111222222
Q ss_pred ccCCchHHHHHHHHHHhcC-CCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHH
Q 001763 300 KRGYDAEAVNYFKRMRKAG-VKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAK 378 (1017)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 378 (1017)
-.|.++.+++++..+.... ..| +..+++-+.. -...+++-.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~----------------------------------~ntpvekLl 192 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVV----------------------------------DNTPVEKLL 192 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccch----HHHHHHHhcc----------------------------------CCchHHHHH
Confidence 3333444444333322110 000 0001111111 111222222
Q ss_pred HHHhhcCC-CCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc
Q 001763 379 KVFDSLDE-RNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT 457 (1017)
Q Consensus 379 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 457 (1017)
.+.....+ .+..++.+.+..-..+|+.+.|..++.+|.+.|+..+.+-|..++-+ .++......+..-|...|+.|
T Consensus 193 ~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p 269 (1088)
T KOG4318|consen 193 NMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP 269 (1088)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC
Confidence 22222333 56667777777777777777777777777777777777766666655 566666666777777777777
Q ss_pred hhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhc
Q 001763 458 NLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACAN 537 (1017)
Q Consensus 458 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 537 (1017)
+..|+...+....+.|....+... .+....+++-..+-+-.| ..|.+.++.-... .++.
T Consensus 270 ~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~----------~v~~---- 328 (1088)
T KOG4318|consen 270 GSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRLRQNLRK----------SVIG---- 328 (1088)
T ss_pred CcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHH----------HHHH----
Confidence 777776665555554432222111 111111111111111122 1122211111000 0000
Q ss_pred ccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-------CchhHHHHHHHHhhCCchHH
Q 001763 538 IQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-------NVVSMNALIAGYAQNNVEDA 610 (1017)
Q Consensus 538 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~A 610 (1017)
.+....-.|++. ...+|. ++.-..-.|.-++...+-..+..| ++-.+...+.
T Consensus 329 ---------s~k~~fLlg~d~-~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr---------- 387 (1088)
T KOG4318|consen 329 ---------STKKLFLLGTDI-LEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR---------- 387 (1088)
T ss_pred ---------HhhHHHHhcccc-chHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH----------
Confidence 000000011111 001111 111111144444444444444432 1222222222
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 001763 611 VVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN 690 (1017)
Q Consensus 611 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 690 (1017)
+.|.+..... +...+. +-.+.+..-+.+....+-+.+... +-..+.+.......
T Consensus 388 -qyFrr~e~~~---~~~i~~-~~qgls~~l~se~tp~vsell~~l---------------------rkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 388 -QYFRRIERHI---CSRIYY-AGQGLSLNLNSEDTPRVSELLENL---------------------RKNSFLRQLVGLSS 441 (1088)
T ss_pred -HHHHHHHhhH---HHHHHH-HHHHHHhhhchhhhHHHHHHHHHh---------------------CcchHHHHHhhhhH
Confidence 2232222210 000000 001111100000001111111110 00111111111100
Q ss_pred ---CCCceee-----------hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 001763 691 ---PKSTVLW-----------TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756 (1017)
Q Consensus 691 ---~~~~~~~-----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 756 (1017)
.+....| +.++..++..-+..+++..-++.... .-| -.|..++.-|.....++.|..+.+++.
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d 518 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEID 518 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhc
Confidence 0222222 23444455555555555433333221 112 457888999999999999999988775
Q ss_pred Hh--CCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-----CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 001763 757 HT--GYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-----RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP 829 (1017)
Q Consensus 757 ~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 829 (1017)
.. .+..|..-+..+.+.+.+.+...++..++.++++ +....+..-+.++-+..|+.+.-.++++-+...|+.-
T Consensus 519 ~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 519 TRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred ccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 33 3445777888999999999999999999998876 2222355677888888999998888888888777643
Q ss_pred ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHH------------------hhhccCCHHHHHHHH
Q 001763 830 DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVD------------------LLGRWGFLKEAEEFI 890 (1017)
Q Consensus 830 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~------------------~l~~~g~~~eA~~~~ 890 (1017)
| ..|.......++...|++.++....+|.+.|.. +.+..++. .|.+.|++.+|.+.+
T Consensus 599 ---t-gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~ 674 (1088)
T KOG4318|consen 599 ---T-GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDIT 674 (1088)
T ss_pred ---c-ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhcc
Confidence 2 345556778889999999999888877777753 33333322 245555555555555
Q ss_pred HhCCC--CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 891 EQLTF--EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 891 ~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
+.-.+ +|. | ..|...|...- .+..+++- +.......|-..|.+.|+|+.|..+|.+|+
T Consensus 675 etpG~r~r~~---R----Dr~~de~e~~~----lEll~elt-~~lg~~dRLL~sy~~~g~~erA~glwnK~Q 734 (1088)
T KOG4318|consen 675 ETPGVRCRNG---R----DRDTDEGEIVP----LELLLELT-HELGKNDRLLQSYLEEGRIERASGLWNKDQ 734 (1088)
T ss_pred ccCcccccCC---C----ccccccCcccc----HHHHHHHH-hHhHHHHHHHHHHHhhhHHHHHHhHHhhCc
Confidence 44321 110 0 11222222222 22222221 122333447788889999999998888887
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-15 Score=178.01 Aligned_cols=222 Identities=12% Similarity=0.100 Sum_probs=153.6
Q ss_pred hHHHHHHHHHHHC-CCCcCHH-hH----HHHHHHHhccCcHHHHHHHHHHHHHhCCC-CCcchHhHHHhHHHhcCCHHHH
Q 001763 711 YEALHFYREMRSH-NVLPDQA-TF----VSVLRACAVLSSLRDGGEIHSLIFHTGYD-LDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 711 ~~A~~~~~~m~~~-~~~pd~~-t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..++.+.+.+.. |+ .....++.+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHH
Confidence 5666666666643 1223221 11 11133445667778888888777766532 22 1223357778888888888
Q ss_pred HHHHHhccCCCh------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------CCCCh---HhHHHHHHHccc
Q 001763 784 AQVFDEMAERNY------VISWNSMIVGFAKNGYAEDALKVFHEMKETQ-----------AMPDD---VTFLGVLTACSH 843 (1017)
Q Consensus 784 ~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~ 843 (1017)
+..|+++...+. ...+..+..++...|++++|++.++++.+.. -.|+. ..+..+..++..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 888887654221 1135556667788888888888888887742 12332 234567778888
Q ss_pred CCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCchHHHH
Q 001763 844 AGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RIWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~ 920 (1017)
.|+.++|++.++++.. ..| +...+..++.++...|+.++|++.+++. ...||. ..+..++......|+++.|+.
T Consensus 372 ~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999887 344 4567788889999999999999999886 467764 466677777888899999999
Q ss_pred HHHHHHhhCCCCCchH
Q 001763 921 AAKKLIELEPENPSPY 936 (1017)
Q Consensus 921 ~~~~~l~~~p~~~~~~ 936 (1017)
.++++++.+|+++.+.
T Consensus 449 ~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 449 LTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999988553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-12 Score=144.91 Aligned_cols=650 Identities=11% Similarity=0.037 Sum_probs=367.1
Q ss_pred HHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhh---cCCCCCcchHHHHHHHHHHcCChhH
Q 001763 164 SACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFD---GAVDLDTVSWTSMIAGYVQAGLPEA 240 (1017)
Q Consensus 164 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~~~ 240 (1017)
+.+...|++++|..++.++++.. +.....|-.|...|-..|+.+++...+- ...+.|..-|-.+-.-..+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344499999999999999985 4566789999999999999999988764 3455677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCc--------cchHHHHHHHhccCCchHHHHHHH
Q 001763 241 AFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNV--------VAWNVMISGHAKRGYDAEAVNYFK 312 (1017)
Q Consensus 241 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~ 312 (1017)
|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++..-+. ..--.++..|...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999986 66666666778889999999999999998876222 122234555666777778887777
Q ss_pred HHHhc-CCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC---CC
Q 001763 313 RMRKA-GVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE---RN 388 (1017)
Q Consensus 313 ~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 388 (1017)
..... +-..+...++.++..+......+.+............++|..-+.. +. .++. . ...|-.... .+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~----~~-~~~~-~-~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT----DE-RRRE-E-PNALCEVGKELSYD 377 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh----hh-hccc-c-ccccccCCCCCCcc
Confidence 76652 2223333444555555555555554444433333222222111100 00 0000 0 000000000 01
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHhhhhcC--CCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHH
Q 001763 389 AVLWNALLGGYSQNCYAHEVVDLFFAMKSSG--FHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALV 466 (1017)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 466 (1017)
... --+.-++.+....+....+.....+.. +.-+...|.-+..++...|.+..|..++..+.......+..+|-.+.
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 111 112223333333333333333333433 33344467778888888899999999988888876666788899999
Q ss_pred HHhhccCChhHHHHHHhhcCCCCcccc---hhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 467 DMYAKSRALEEARKQFERIQNQDNVSW---NAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 467 ~~~~~~g~~~~A~~~f~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
.+|...|..+.|.+.|+.+..-++... -+|-..+-+.|+.++|++++..|. .||..+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~D~~~---------------- 516 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NPDGRN---------------- 516 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CCCccc----------------
Confidence 999999999999999998876443333 345567888999999999999886 344321
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCC
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLS 623 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~ 623 (1017)
....+..+ +..+.-...+.|...|+.++-..+-..|.. ......++. -++...+.... ...+.+
T Consensus 517 -------~e~~a~~~-e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~--~~~~~~~~f--~~~~k~r~~~~----~~~~~~ 580 (895)
T KOG2076|consen 517 -------AEACAWEP-ERRILAHRCDILFQVGKREEFINTASTLVD--DFLKKRYIF--PRNKKKRRRAI----AGTTSK 580 (895)
T ss_pred -------hhhccccH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHhc--chHHHHHHHhh----cccccc
Confidence 01111222 555556667777777877764444333321 001111110 00000000000 000011
Q ss_pred CChHHHHHHHHhccCCCccchhhH------HHHHHHHhCCCCCch-HHHHHHHHHHHhcCChHHHHHHHhhCCC-----C
Q 001763 624 PNDITFTSLLDACDGPYKFHLGTQ------IHCLIVKKGLLFDDD-FLHIALLSMYMNSKRNTDARLLFTEFPN-----P 691 (1017)
Q Consensus 624 p~~~t~~~ll~a~~~~~~~~~a~~------~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~ 691 (1017)
-...+.-....+-.+.++.....+ ........|+.-++. .....++..+.+.++.++|..+...+.. .
T Consensus 581 ~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~ 660 (895)
T KOG2076|consen 581 RYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQ 660 (895)
T ss_pred ccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc
Confidence 111111112222222211111110 011111123222233 4556677788889999999988776654 0
Q ss_pred CCc---eeehhhhhhcccCCCchHHHHHHHHHHHC-CC--CcCH-HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc
Q 001763 692 KST---VLWTAVISGHAQNDSNYEALHFYREMRSH-NV--LPDQ-ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE 764 (1017)
Q Consensus 692 ~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~--~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 764 (1017)
+.. ..-..++.+....+++.+|.+.++.|... +. .|.. ..|+..++.....++-.--.+....+.......++
T Consensus 661 ~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~ 740 (895)
T KOG2076|consen 661 DSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTP 740 (895)
T ss_pred cHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCc
Confidence 111 12234566677888999999999988764 11 2222 23443444444444433333333333333333234
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--CChh-------HHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCCC-Ch
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV-------ISWNSMIVGF---AKNGYAEDALKVFHEMKETQAMP-DD 831 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~-------~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~g~~p-~~ 831 (1017)
..+..-+.....+|.+..|...+-++.. |+.+ .++..+...- .+|-..-+++..+.+-.+....- ..
T Consensus 741 ~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~Q 820 (895)
T KOG2076|consen 741 PLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQ 820 (895)
T ss_pred ceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 4444555666778888888887765543 4432 1122221111 12223345555555555532111 23
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..+.+++.+|-+.|.+.-|..+|+++++
T Consensus 821 Ea~YNigRayh~~gl~~LA~~YYekvL~ 848 (895)
T KOG2076|consen 821 EAFYNIGRAYHQIGLVHLAVSYYEKVLE 848 (895)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhC
Confidence 6777888888888888888888888876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-13 Score=159.36 Aligned_cols=450 Identities=10% Similarity=0.083 Sum_probs=246.6
Q ss_pred HccCChhHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHH---HHHhhhcccchHh
Q 001763 369 AKCEKMESAKKVFDSLDERNAV---LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTS---ILSSCACLEYLEM 442 (1017)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~ 442 (1017)
.+.|+++.|...|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+.. +...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555544432211 12244444444455555555555444 122211111 1223334455555
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHh--cCCHHHHHHHHHHhhccC
Q 001763 443 GRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQ--EGDVFEAFNMFRRMNLVG 520 (1017)
Q Consensus 443 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g 520 (1017)
|.++++.+++.... +..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~- 198 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL- 198 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh-
Confidence 55555555444322 234445667778888888888888888876554433334445544 45555689999988874
Q ss_pred CCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-CchhHHHHH
Q 001763 521 IVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-NVVSMNALI 599 (1017)
Q Consensus 521 ~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li 599 (1017)
.|+ +...+..++....+.|-...|.++..+-++- +...+.-+-
T Consensus 199 -~P~-----------------------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 199 -APT-----------------------------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred -CCC-----------------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 454 6777778888888888888888887766520 000000000
Q ss_pred HHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCcc---chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 001763 600 AGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKF---HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSK 676 (1017)
Q Consensus 600 ~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 676 (1017)
.. .|. ++++.+..|+.. ....+ +.+..-...++
T Consensus 243 ~~-------~~a----~~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~----------------------- 278 (822)
T PRK14574 243 RD-------AAA----EQVRMAVLPTRS----------ETERFDIADKALADYQNLL----------------------- 278 (822)
T ss_pred HH-------HHH----HHHhhccccccc----------chhhHHHHHHHHHHHHHHH-----------------------
Confidence 00 011 111111111000 00011 11111111111
Q ss_pred ChHHHHHHHhhCCC-CCCceee----hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHH
Q 001763 677 RNTDARLLFTEFPN-PKSTVLW----TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEI 751 (1017)
Q Consensus 677 ~~~~A~~~~~~~~~-~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~ 751 (1017)
...+. |+....| --.+.++...|++.+++..|+.+...+.+....+-..+.++|...+..++|..+
T Consensus 279 ---------~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 279 ---------TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred ---------hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 11111 1111111 123455667777888888888887776543344666777777777777777777
Q ss_pred HHHHHHhCCC-----CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001763 752 HSLIFHTGYD-----LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826 (1017)
Q Consensus 752 ~~~~~~~~~~-----~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 826 (1017)
+..+.....+ ++......|.-+|...+++++|..+++++.+..+. - +.-+ |.. ...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~-~----~~~~---~~~-----------~~~ 410 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPY-Q----VGVY---GLP-----------GKE 410 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-E----Eecc---CCC-----------CCC
Confidence 7777554321 12233455666667777777777777766652110 0 0000 000 011
Q ss_pred CCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HH
Q 001763 827 AMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IW 902 (1017)
Q Consensus 827 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~ 902 (1017)
.+||-. .+..++..+...|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.. ...|+.. +.
T Consensus 411 pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~ 487 (822)
T PRK14574 411 PNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILE 487 (822)
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHH
Confidence 234433 334455667778888888888888866 344 5667777888888888888888888665 3566543 55
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
...+.+....|++..|+.+.+++++..|+++..
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 566667777889999999999999999988744
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-13 Score=134.90 Aligned_cols=249 Identities=17% Similarity=0.145 Sum_probs=189.4
Q ss_pred HHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCch
Q 001763 279 LFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNV 358 (1017)
Q Consensus 279 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 358 (1017)
++-+....+..+|.+||.|+|+--..+.|.++|++-.....+.+..+|+.+|.+..-. .++.+..+|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCch
Confidence 4555555677899999999999999999999999999888999999999999876533 348899999999999999
Q ss_pred hhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhccc
Q 001763 359 YVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLE 438 (1017)
Q Consensus 359 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 438 (1017)
.++|+++.+..+.|+++.|.+. |++++.+|++-|+.|.-.+|..+|.-+++.+
T Consensus 274 ~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 9999999999999999988765 4556677777778887777777777777666
Q ss_pred chHh-hHHHHHHHHHh----cCCc----hhhHHHHHHHHhhccCChhHHHHHHhhcCCCC-----------cccchhhhH
Q 001763 439 YLEM-GRQLHAVIIKN----KLAT----NLYVGNALVDMYAKSRALEEARKQFERIQNQD-----------NVSWNAIIV 498 (1017)
Q Consensus 439 ~~~~-a~~~~~~~~~~----~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-----------~~~~~~li~ 498 (1017)
+..+ +..+...+... .++| |...+..-++.+.+..+.+-|.++-.-....+ ..-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 5533 33333333221 1222 34444555556667777777776655544321 123455667
Q ss_pred HhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCC
Q 001763 499 GYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLET 558 (1017)
Q Consensus 499 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~ 558 (1017)
..++....+.-+..|+.|.-.-+.|+..+...+++|....+.++...+++..++..|...
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 788888899999999999998899999999999999999999999888888888766443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=131.80 Aligned_cols=334 Identities=14% Similarity=0.115 Sum_probs=242.5
Q ss_pred chhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcC--CChh-HHHHHHHHHHHhcCCCCcchHHHH
Q 001763 121 ILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKS--MDVS-YGRQLHCHVIELGFESSSFCKGAL 197 (1017)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~-~a~~~~~~~~~~g~~~~~~~~~~l 197 (1017)
+++=|.|+... .+|..+++.-+|+.|+..|+..+...-..+++..+-. .++- .-.+.|-.|...|-. +..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 44566666644 4688999999999999999988877666666553322 2222 223344444444422 22232
Q ss_pred HHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH
Q 001763 198 IDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR 277 (1017)
Q Consensus 198 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 277 (1017)
|.|.+.+ ++-+...++..+|..||.|+|+--..++|.+++++-.....+.+..+||.+|.+-.-.-+ .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 4454443 445555667789999999999999999999999999998889999999999987654444 4
Q ss_pred HHHHhcC----CCCccchHHHHHHHhccCCchH----HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhH-HHHHHHH
Q 001763 278 ELFAQMQ----NPNVVAWNVMISGHAKRGYDAE----AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDF-GLIVHAE 348 (1017)
Q Consensus 278 ~~~~~m~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 348 (1017)
+++.+|. .||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|.-+++.++..+ +..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5555554 5999999999999999998876 45778899999999999999999999988887754 3344444
Q ss_pred HHH----hCCCC----chhhhHHHHHHHHccCChhHHHHHHhhcCCC-----------CcchHHHHHHHHHhCCChhHHH
Q 001763 349 AIK----QGLYS----NVYVASSLINMYAKCEKMESAKKVFDSLDER-----------NAVLWNALLGGYSQNCYAHEVV 409 (1017)
Q Consensus 349 ~~~----~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~ 409 (1017)
+.. ..+.| |...+..-+..+.+..+.+-|.++-.-.... ..+-|..+....++....+..+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 22322 4455566667777888888888776554432 1223566777888888999999
Q ss_pred HHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhc
Q 001763 410 DLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAK 471 (1017)
Q Consensus 410 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 471 (1017)
..|+.|.-.-+-|+..+...++.+....+.++...+++..++..|...+....--++..+++
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 99999998888899999999999999999999999999888888765554444444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-11 Score=126.10 Aligned_cols=496 Identities=12% Similarity=0.077 Sum_probs=297.3
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcC
Q 001763 306 EAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLD 385 (1017)
Q Consensus 306 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 385 (1017)
.=.+++++..+ ..|+.. .|-.+.....+.+.|..++...++.-.. +.. |.-+|.+...++.|.++++...
T Consensus 364 ~K~RVlRKALe--~iP~sv---~LWKaAVelE~~~darilL~rAveccp~-s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALE--HIPRSV---RLWKAAVELEEPEDARILLERAVECCPQ-SMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHH--hCCchH---HHHHHHHhccChHHHHHHHHHHHHhccc-hHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666655 345443 2334445556666677777777765332 233 3445667777888988888766
Q ss_pred C---CCcchHHHHHHHHHhCCChhHHHHHHHh----hhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-
Q 001763 386 E---RNAVLWNALLGGYSQNCYAHEVVDLFFA----MKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT- 457 (1017)
Q Consensus 386 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~- 457 (1017)
+ .+...|.+-...--++|+.+....++.+ +...|+..+...|..=..+|-..|..-....+...++..|+..
T Consensus 434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 4777888777777788888888887765 4567888888888887788888888888888888888877754
Q ss_pred -hhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCc-ccHHHHH
Q 001763 458 -NLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD-VSSASIL 532 (1017)
Q Consensus 458 -~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll 532 (1017)
-..+|+.-.+.+.+.+.++-|+.+|....+ .+.+.|...+..--.+|..++-..+|++.... .|-. ..+....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHH
Confidence 345777777888899999999998887765 35567887777777788888888888888764 2322 2222223
Q ss_pred HHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHH
Q 001763 533 SACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVV 612 (1017)
Q Consensus 533 ~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~ 612 (1017)
+-.-..|++..++.+...+.+.... +..++-+-+..-.....++.|+.+|.+.
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn--seeiwlaavKle~en~e~eraR~llaka------------------------- 644 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN--SEEIWLAAVKLEFENDELERARDLLAKA------------------------- 644 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHHHH-------------------------
Confidence 3333445555555555555443322 3444444555555555555555555443
Q ss_pred HHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--
Q 001763 613 LYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-- 690 (1017)
Q Consensus 613 l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 690 (1017)
.. ..|+...|.--..--.-.++.++|.++++..++.- |.-...+..++.++.+.++++.|++.|..-..
T Consensus 645 -----r~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 645 -----RS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred -----hc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 33 34444444443333444566777777777766665 56667777777778888888877777765443
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHH
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSAL 770 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 770 (1017)
|..+..|-.|...-- +.|.+-+|+.+++...-.+|+ +...|...
T Consensus 716 P~~ipLWllLakleE-----------------------------------k~~~~~rAR~ildrarlkNPk-~~~lwle~ 759 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEE-----------------------------------KDGQLVRARSILDRARLKNPK-NALLWLES 759 (913)
T ss_pred CCCchHHHHHHHHHH-----------------------------------HhcchhhHHHHHHHHHhcCCC-cchhHHHH
Confidence 334444444444433 444444555555554444444 45555555
Q ss_pred HhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 848 (1017)
|.+=.+.|..+.|..+..+... |+....|..-|......++-.+....+++. .-|...+..+...+-...+++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~ 834 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIE 834 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHH
Confidence 5555555555555555544433 333234555555555555544444444332 223334444455555555566
Q ss_pred HHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 849 EGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 849 ~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.|.+.|++.++ +.|+. +.|..+...+.+.|.-++-.+++.+.
T Consensus 835 kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 835 KAREWFERAVK---KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHc---cCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554 34432 34555555555666555555555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-13 Score=135.45 Aligned_cols=481 Identities=11% Similarity=0.076 Sum_probs=297.1
Q ss_pred HHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHH-HHHHhhhcccchHhhHHHHHHHHHhcCCc----hhhHHHHHHHH
Q 001763 394 ALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYT-SILSSCACLEYLEMGRQLHAVIIKNKLAT----NLYVGNALVDM 468 (1017)
Q Consensus 394 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~ 468 (1017)
.|..-|..+....+|+..|+-+.+...-|+.-.+- .+-..+.+...+..|..+++..++.-... .+.+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34556777778889999998888877777764332 23344566778888888888777653222 23344555556
Q ss_pred hhccCChhHHHHHHhhcCC--CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchh
Q 001763 469 YAKSRALEEARKQFERIQN--QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQ 546 (1017)
Q Consensus 469 ~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~ 546 (1017)
+.+.|+++.|+..|+...+ |+..+--.||-.+.--|+.++..+.|.+|..-...||..-|.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi----------------- 348 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI----------------- 348 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-----------------
Confidence 7788899999888887654 555543334444555678888888888888765555543221
Q ss_pred HHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch---HHHHHHHHHHHcCCC
Q 001763 547 VHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE---DAVVLYRGMQTEGLS 623 (1017)
Q Consensus 547 i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~---~A~~l~~~m~~~g~~ 623 (1017)
+..-+| +..+.+.- .+...+ +.|. +.+.. +++-.--+++.--+.
T Consensus 349 ------~~~ddp-~~~ll~ea----i~nd~l-------k~~e---------------k~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 349 ------KEKDDP-DDNLLNEA----IKNDHL-------KNME---------------KENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred ------CCcCCc-chHHHHHH----HhhHHH-------HHHH---------------HhhhhhHHHHHHHHHHHhccccc
Confidence 000111 11111111 111100 0000 00000 111111122221122
Q ss_pred CChHH-HHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCcee----eh
Q 001763 624 PNDIT-FTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVL----WT 698 (1017)
Q Consensus 624 p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 698 (1017)
||-.. +...+ +. +...-..|.....-..-+--|.++|+++.|.++++-... ++..+ -|
T Consensus 396 ~~fa~g~dwcl-------------e~---lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~-kdnk~~saaa~ 458 (840)
T KOG2003|consen 396 PDFAAGCDWCL-------------ES---LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEK-KDNKTASAAAN 458 (840)
T ss_pred cchhcccHHHH-------------HH---HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHh-ccchhhHHHhh
Confidence 22110 00000 00 000000011111112234457788888888887776655 22211 12
Q ss_pred hhh-hhccc-CCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHh
Q 001763 699 AVI-SGHAQ-NDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAK 776 (1017)
Q Consensus 699 ~li-~~~~~-~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~ 776 (1017)
.|- --|.+ ..++.+|..+-+..+... +-+......-.+.....|++++|.+.+...+..+-. -+.....++-.+.+
T Consensus 459 nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~ 536 (840)
T KOG2003|consen 459 NLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEA 536 (840)
T ss_pred hhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHH
Confidence 221 12333 335566666655554322 222333333334445678999999998888765443 34455556667889
Q ss_pred cCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHH
Q 001763 777 CGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQI 853 (1017)
Q Consensus 777 ~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~ 853 (1017)
.|++++|++.|-++.. .+.+.....+.+.|....+..+|++++.+... +.|+. ..+.-|...|-+.|+-.+|.++
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 9999999999987654 33333778889999999999999999988776 66765 6778889999999999999887
Q ss_pred HHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHH-HhcCCchHHHHHHHHHHhhCC
Q 001763 854 FETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSRIWTTLLGAC-GVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 854 ~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~p 930 (1017)
+-.- |..-| +.++...+..-|....-.++|+.++++.. ++|+..-|..++..| ++.|++.+|...|+..-...|
T Consensus 615 ~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 615 HYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred hhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6543 44444 67888888888899999999999999974 799999999988665 578999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCC
Q 001763 931 ENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~g~ 948 (1017)
+|..-+-.|-.+....|-
T Consensus 692 edldclkflvri~~dlgl 709 (840)
T KOG2003|consen 692 EDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cchHHHHHHHHHhccccc
Confidence 999888888777666664
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-15 Score=160.28 Aligned_cols=253 Identities=16% Similarity=0.178 Sum_probs=105.6
Q ss_pred hcccCCCchHHHHHHHHHHHCCCCcCHHhH-HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH
Q 001763 703 GHAQNDSNYEALHFYREMRSHNVLPDQATF-VSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781 (1017)
Q Consensus 703 ~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 781 (1017)
.+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...|+++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 334444444444444333222112333222 22333444555666666666665555444 45556666666 5777888
Q ss_pred HHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 782 RSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQA-MPDDVTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 782 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
+|.+++....+ ++.. .|..++..+...|+++++.++++++....- .++...|..+...+.+.|++++|++.|++.+
T Consensus 95 ~A~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPR-YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccc-hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88877766543 3333 667777778888888888888888775322 2344566777777888888888888888887
Q ss_pred hhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 859 SCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 859 ~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
+ ..|+ ......++.++...|+.+++.++++... .+.|+..|..++.++...|+.+.|...++++++.+|+|+..
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 7 4564 5567778888888888888777776642 24466689999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
...+++++...|+.++|.+++++.-+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-13 Score=135.14 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=137.6
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVF 819 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 819 (1017)
.|+.-.+.+-++.+++..+. +...|.-+..+|....+-++-.+.|+.... |....+|..-...+.-.+++++|+.-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444 223355555555555555555555555443 222225555555555556666666666
Q ss_pred HHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC
Q 001763 820 HEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP 897 (1017)
Q Consensus 820 ~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p 897 (1017)
++.++ +.|+. ..|..+.-+..+.++++++...|+..+++ .+--++.|+....+|..++++++|.+.++.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 66666 45644 45666665556666777777777776653 3334566666667777777777777766653 3344
Q ss_pred C---------HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 898 D---------SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 898 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+ +.+-.+++-.-+. +|+..|+.+.++++++||..-.+|..|+.+-.+.|+.++|++++++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3334444433333 8999999999999999999999999999999999999999999986543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=148.96 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=215.1
Q ss_pred ChHHHHHHHhhCCC-CCCceee--hhhhhhcccCCCchHHHHHHHHHHHCCCCc----CHHhHHHHHHHHhccCcHHHHH
Q 001763 677 RNTDARLLFTEFPN-PKSTVLW--TAVISGHAQNDSNYEALHFYREMRSHNVLP----DQATFVSVLRACAVLSSLRDGG 749 (1017)
Q Consensus 677 ~~~~A~~~~~~~~~-~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----d~~t~~~ll~~~~~~~~~~~a~ 749 (1017)
+..+|...|...+. ..++. | ..++.+|...+++++|.++|+...+. .| +...|.+++- +..+.-+--
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LW---HLq~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLW---HLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHH---HHHhhHHHH
Confidence 45677777777554 23333 4 34677788888888888888887764 33 3345555543 222222212
Q ss_pred HHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 001763 750 EIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827 (1017)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 827 (1017)
.+-+.+++..+. .+.+|.++++.|.-+++.+.|++.|++...-|. .-+|+.+..-+.....+|+|...|+..+. +
T Consensus 408 ~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 223344555554 789999999999999999999999999987444 34667777778888999999999999888 7
Q ss_pred CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHH
Q 001763 828 MPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWT 903 (1017)
Q Consensus 828 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~ 903 (1017)
.|.. ..|.+|+..|.++++++.|.-.|+++++ +.|.. ....++...+.+.|+.|+|++++++. ..+| |+..-.
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 7887 5789999999999999999999999987 88864 45677888899999999999999986 4566 555555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.-+..+...+++++|...+|.+-++-|+++..|.+++.+|-+.|+.+.|..-+..+.+...
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 5666677789999999999999999999999999999999999999999999988877644
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-09 Score=119.12 Aligned_cols=673 Identities=13% Similarity=0.169 Sum_probs=357.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC--CCccchHHHHHHHhccCCc
Q 001763 227 SMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN--PNVVAWNVMISGHAKRGYD 304 (1017)
Q Consensus 227 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~ 304 (1017)
-.+.+|+..|.+++++-.. .+.|..||... +++...+ -..+.+.++...|.+ +...-++.+...+......
T Consensus 486 KVi~cfAE~Gqf~KiilY~---kKvGyTPdymf---lLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~i 558 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYA---KKVGYTPDYMF---LLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLI 558 (1666)
T ss_pred HHHHHHHHhcchhHHHHHH---HHcCCCccHHH---HHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhh
Confidence 3455666666666555443 34577777544 4444444 677888888777765 4455577777777777777
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhc
Q 001763 305 AEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSL 384 (1017)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 384 (1017)
+.+..++-...+. ..|+.....+-+---.-.+ |-++-+.++..+.- ..+-+..+.+.+.+.|-...|.+.+..+
T Consensus 559 Qq~TSFLLdaLK~-~~Pd~g~LQTrLLE~NL~~----aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 559 QQCTSFLLDALKL-NSPDEGHLQTRLLEMNLVH----APQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred hhhHHHHHHHhcC-CChhhhhHHHHHHHHHhcc----chHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhcccH
Confidence 7777776665543 5555443332221111112 22333333333332 2223667788899999999999888876
Q ss_pred CC-CCcchHHHH-----HHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHH------
Q 001763 385 DE-RNAVLWNAL-----LGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIK------ 452 (1017)
Q Consensus 385 ~~-~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~------ 452 (1017)
.+ +.++..+.+ +..|.-.-.++++++.++.|...+++-|..+...+..-|+..-..+.-.++|+....
T Consensus 633 ~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~y 712 (1666)
T KOG0985|consen 633 YDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYY 712 (1666)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHH
Confidence 54 111111211 234555667889999999999888888876665555544433333333333333221
Q ss_pred -----hcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---------------CC---------cccchhhhHHhHhc
Q 001763 453 -----NKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---------------QD---------NVSWNAIIVGYVQE 503 (1017)
Q Consensus 453 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~---------~~~~~~li~~~~~~ 503 (1017)
.++.-|+.+.-..|.+-++.|++.+.+++.++-.- .| ..-+-.=+..|.-.
T Consensus 713 fLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr 792 (1666)
T KOG0985|consen 713 FLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR 792 (1666)
T ss_pred HHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHH
Confidence 13455666777788999999999888887765321 11 11111112223333
Q ss_pred CCHHHHHHHHHHhhccCCCCCcccHHHH--------------------------HHHhhcccCCCcchhHHHHHhhhCCC
Q 001763 504 GDVFEAFNMFRRMNLVGIVPDDVSSASI--------------------------LSACANIQGLPQGEQVHCFSVKTSLE 557 (1017)
Q Consensus 504 g~~~~A~~~~~~m~~~g~~pd~~t~~~l--------------------------l~a~~~~~~~~~~~~i~~~~~~~~~~ 557 (1017)
++..+-+++|-+-..-+-.|- ....+ ..-+.+.+++..-....+..+..|..
T Consensus 793 nn~~kyIE~yVQkvNps~~p~--VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~ 870 (1666)
T KOG0985|consen 793 NNLQKYIEIYVQKVNPSRTPQ--VVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ 870 (1666)
T ss_pred hhHHHHHHHHHhhcCCcccch--hhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc
Confidence 334444444433222111110 11111 11111222222222223333333333
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 558 TSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 558 ~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
++.++|+|...|..+++-.+ .+++ .|..-=+..+..||...++ -|.-.|++-+ -| .-++..|
T Consensus 871 --d~a~hnAlaKIyIDSNNnPE--~fLk----eN~yYDs~vVGkYCEKRDP~lA~vaYerGq-----cD----~elI~vc 933 (1666)
T KOG0985|consen 871 --DPATHNALAKIYIDSNNNPE--RFLK----ENPYYDSKVVGKYCEKRDPHLACVAYERGQ-----CD----LELINVC 933 (1666)
T ss_pred --chHHHhhhhheeecCCCChH--Hhcc----cCCcchhhHHhhhhcccCCceEEEeecccC-----Cc----HHHHHhc
Confidence 44444444444444332111 0111 1111111122223333222 2221111100 00 1122222
Q ss_pred cCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh-----CCCCCCceeehhhhhhcccCCCch
Q 001763 637 DGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE-----FPNPKSTVLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 637 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~ 711 (1017)
.....+..-.++ +++ ..|...|....+ . ...--+.++++ +++..|+..-+.-..++...+-+.
T Consensus 934 NeNSlfK~~aRY---lv~----R~D~~LW~~VL~---e--~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 934 NENSLFKSQARY---LVE----RSDPDLWAKVLN---E--ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred CchhHHHHHHHH---HHh----ccChHHHHHHHh---c--cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 221111110000 000 011111111110 0 00000111221 111233333444455566666666
Q ss_pred HHHHHHHHHHHCCCC-cCHHhHHH----------------------------HHHHHhccCcHHHHHHHHHHHHHhCCCC
Q 001763 712 EALHFYREMRSHNVL-PDQATFVS----------------------------VLRACAVLSSLRDGGEIHSLIFHTGYDL 762 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~-pd~~t~~~----------------------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 762 (1017)
+-++++++..-.+-. .....+.. +...+...+-+|+|..+|+.. ..
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf-----~~ 1076 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF-----DM 1076 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh-----cc
Confidence 666666665432100 00011111 223344455566666665542 12
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcc
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACS 842 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 842 (1017)
+......|++ .-|.++.|.+.-++..++. .|..++.+-.+.|...+|++-|-+. -|...|.-++.+++
T Consensus 1077 n~~A~~VLie---~i~~ldRA~efAe~~n~p~---vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1077 NVSAIQVLIE---NIGSLDRAYEFAERCNEPA---VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred cHHHHHHHHH---HhhhHHHHHHHHHhhCChH---HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 3333333332 3456666766666554433 8999999999999999999887432 24578999999999
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHH
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAA 922 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 922 (1017)
+.|.|++-.+++...++ ..-+|..+ +.++-+|.+.|++.|-++++. .|+..-....++-|...|.++.|+..|
T Consensus 1145 ~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred hcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 99999999998887776 44455544 568889999999999888875 577777888899999999999998887
Q ss_pred HHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEE
Q 001763 923 KKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVL 975 (1017)
Q Consensus 923 ~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~ 975 (1017)
. +.+.+-.|+..+...|+++.|...-++......-|..+.+.++-
T Consensus 1218 ~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~ 1262 (1666)
T KOG0985|consen 1218 S--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDK 1262 (1666)
T ss_pred H--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhch
Confidence 6 55678889999999999999987766666555555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-12 Score=127.97 Aligned_cols=291 Identities=12% Similarity=0.117 Sum_probs=212.6
Q ss_pred hhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH--HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 702 SGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV--LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 702 ~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
.-|.++|+++.|+++++-+....-+.-...-+.| +.-..--.++..|.++.+..+..+-- ++.....-++.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 3478899999999999888765433322222222 22222345677787777766543321 33344444556667899
Q ss_pred HHHHHHHHHhccCCChhH--HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 780 VKRSAQVFDEMAERNYVI--SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
+++|.+.+++....+..+ ....+.-.+...|+.++|++.|-++-.. +..+...+..+.+.|....+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999999877662 3455666788899999999999887653 2335577888999999999999999999888
Q ss_pred hhhcCCCcCchhHHHHHHhhhccCCHHHHHHHH-HhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 858 VSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFI-EQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 858 ~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~-~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.. -++.++...+.+.++|-+.|+..+|.+.. +....-| +..+...|..-|....=.+.++..++++--+.|.-+.-
T Consensus 585 ~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred cc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 66 24446788999999999999999999885 4444334 44455556666666667799999999999999988888
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHH
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLT 1003 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~ 1003 (1017)
-...+..+.+.|+|++|..+++.+..+=.+. -.|-...+. +.||..-...+|+-.+|++++
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrkfped-ldclkflvr------i~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPED-LDCLKFLVR------IAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCccc-hHHHHHHHH------HhccccchhHHHHHHHHHHHH
Confidence 8899999999999999999999887542221 122211111 567888888899988888765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=140.64 Aligned_cols=246 Identities=17% Similarity=0.110 Sum_probs=197.4
Q ss_pred CchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC--CCcchHhHHHhHHHhcCCHH-HHHH
Q 001763 709 SNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD--LDEITGSALIDMYAKCGDVK-RSAQ 785 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~-~A~~ 785 (1017)
+..+|+.+|.+...+ +.-.......+..+|...+++++++.+|+.+.+..+- -+..+|.+.+-.+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457999999996554 2333466677888999999999999999999876542 26677777664443221111 1333
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCC
Q 001763 786 VFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQ 864 (1017)
Q Consensus 786 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 864 (1017)
+.+.. ++...+|-+++++|.-+++.+.|++.|++.++ ++|+. .+|+.++.-+.....+|.|...|+..+.
T Consensus 413 Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 413 LIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 33332 33334999999999999999999999999999 77854 7888888888889999999999998754
Q ss_pred cCchhHHHH---HHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 001763 865 PRVDHCACM---VDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 865 p~~~~~~~l---~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l 939 (1017)
.++.||+.+ .-.|.+.++++.|+-.|++. .++|. .++...++..+.+.|+.|+|...+++++-++|.|+-.-+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 566666654 56799999999999999986 68885 55677777889899999999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 940 SNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+.++...+++++|.+.++++++--.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc
Confidence 9999999999999999999998644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.2e-12 Score=138.45 Aligned_cols=277 Identities=12% Similarity=0.062 Sum_probs=206.1
Q ss_pred cCChHHHHHHHhhCCCC-CCceeehhh-hhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH--HHHHHHhccCcHHHHHH
Q 001763 675 SKRNTDARLLFTEFPNP-KSTVLWTAV-ISGHAQNDSNYEALHFYREMRSHNVLPDQATFV--SVLRACAVLSSLRDGGE 750 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~~-~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~--~ll~~~~~~~~~~~a~~ 750 (1017)
.|+++.|++.....+.. +++..+..+ .....+.|++++|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58888888777765541 122222222 33347789999999999999874 56653332 33567888999999999
Q ss_pred HHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHHHhCCCHHHHHHHHH
Q 001763 751 IHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV----------ISWNSMIVGFAKNGYAEDALKVFH 820 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~ 820 (1017)
.++.+.+..|. ++.+...+..+|.+.|+|++|.+++..+.+.... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999887 7889999999999999999999999988863221 133344444444455566666666
Q ss_pred HHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-
Q 001763 821 EMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD- 898 (1017)
Q Consensus 821 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~- 898 (1017)
++.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66442 223446778889999999999999999999876 34544322 223334569999999999886 45664
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+..+.+++..|...+++++|+..++++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788899999999999999999999999965 5678999999999999999999986644
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-08 Score=110.14 Aligned_cols=191 Identities=14% Similarity=0.093 Sum_probs=103.8
Q ss_pred HHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcc
Q 001763 465 LVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQG 544 (1017)
Q Consensus 465 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~ 544 (1017)
-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..++.+++..+-...-+ ..|-..+-.-+...|++..+
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaa 901 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAA 901 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHH
Confidence 33334456666666666665555542 35556666666666666554321111 12223333444455566555
Q ss_pred hhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhh-CCchHHHHHHHHH--HHcC
Q 001763 545 EQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQ-NNVEDAVVLYRGM--QTEG 621 (1017)
Q Consensus 545 ~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~~~~~A~~l~~~m--~~~g 621 (1017)
+.-|-. ..-+.+-++||-.++.|++|.++-+.-...|..-.-.. ..++ -|-+.|++++++. ...
T Consensus 902 e~~fle----------a~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f--lwaksiggdaavkllnk~gll~~- 968 (1636)
T KOG3616|consen 902 EEHFLE----------AGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF--LWAKSIGGDAAVKLLNKHGLLEA- 968 (1636)
T ss_pred HHHHHh----------hhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH--HHHHhhCcHHHHHHHHhhhhHHH-
Confidence 544432 23366778899999999999988765443332211111 1111 1222455555442 221
Q ss_pred CCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 001763 622 LSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN 690 (1017)
Q Consensus 622 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 690 (1017)
.++-.+..+.++-|..+-....+. .-..++..++..+...|++++|.+.+-+..+
T Consensus 969 ----------~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 969 ----------AIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred ----------HhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 122223445556665555544443 3346677788888899999999888877655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=125.68 Aligned_cols=248 Identities=13% Similarity=0.150 Sum_probs=190.2
Q ss_pred hcccCCCchHHHHHHHHHHHCCC-C-cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCH
Q 001763 703 GHAQNDSNYEALHFYREMRSHNV-L-PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDV 780 (1017)
Q Consensus 703 ~~~~~g~~~~A~~~~~~m~~~~~-~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~ 780 (1017)
+.....++++|+..|++...... + -|..+|..++-+-.....+.---+....+-+ -.+.+...+++-|.-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idK----yR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDK----YRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhcc----CCccceeeehhHHHHHHhH
Confidence 34445666777777777766421 1 1456676666443322222111111112222 2456788889999999999
Q ss_pred HHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 781 KRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 781 ~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
++|...|++..+ |+....|+.|+.-|..-.+...|++-++.+++ +.|-. ..|.+|+.+|.-.+...=|+-+|++.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 999999999887 44456899999999999999999999999999 67744 78999999999999999999999999
Q ss_pred hhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHh-------
Q 001763 858 VSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIE------- 927 (1017)
Q Consensus 858 ~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~------- 927 (1017)
.+ ++|+ ...+..|+++|.+.++.+||++.+.+.- .+.+..++..|+..+...++.++|...+++-++
T Consensus 425 ~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~ 501 (559)
T KOG1155|consen 425 LE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGE 501 (559)
T ss_pred Hh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc
Confidence 87 6775 5689999999999999999999998863 344557888899999999999999999999988
Q ss_pred hCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 001763 928 LEPENPSPYVQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 959 (1017)
.+|+-..+..-|++-+.+.++|++|.......
T Consensus 502 ~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 502 IDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 45666677788999999999999998866543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-11 Score=125.28 Aligned_cols=279 Identities=10% Similarity=0.016 Sum_probs=179.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 001763 660 DDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLR 737 (1017)
Q Consensus 660 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~ 737 (1017)
.++.+....++-+...+++.+-.++++.+.+ |.....+..-|.++...|+..+-..+=.+|.+. .+-..++|.++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 6677777788888888888888888887766 455555555566777777777777777777664 2333567777776
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDA 815 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 815 (1017)
-|...|+..+|++.+.+....++. -...|...+..|+-.|.-|+|+..+....+ ++.-...--+..-|.+.++.+-|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 666667777777777776655554 345677777777777777777777665543 33221223344456666777777
Q ss_pred HHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhc-CCCc----CchhHHHHHHhhhccCCHHHHHHH
Q 001763 816 LKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCH-GIQP----RVDHCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
.+.|.+... +.|+. ..+.-++-...+.+.+.+|..+|+..+..- .+.+ ....+++++-+|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 777777666 55644 444445444556777777777777765311 0111 122356666677777777777777
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 890 IEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 890 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
+++. ...| |..++.+++-.+...|+++.|+..+.+++-++|+|..+-..|+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 7664 3333 555666666666677777777777777777777776555555533
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-11 Score=123.66 Aligned_cols=485 Identities=11% Similarity=0.052 Sum_probs=278.4
Q ss_pred HHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhh--cCCCCcchHHHHHHHHHhCCChh
Q 001763 329 VLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDS--LDERNAVLWNALLGGYSQNCYAH 406 (1017)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~ 406 (1017)
+++-+.....+..|.-+-+.+...+. |+.-.--+.++|.-.|+++.|..+... +.+.|..+.......+.+..+++
T Consensus 22 ~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~ 99 (611)
T KOG1173|consen 22 LVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWD 99 (611)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555555555553 444444567888888888888777754 55678888888888999999999
Q ss_pred HHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 407 EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 407 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
+|+.++..-. +.-+...+-.--. +..-..+.+...+..-.+.++ +-.=-..|....+.++|+..|.+..
T Consensus 100 ~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~essi------c~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 100 QALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGEDLMINLESSI------CYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHhcccc---hhhcchhhcchhh--hceeccCcccccccccchhce------eeeeeehhhhhccHHHHHHHHHHHH
Confidence 9999887321 1111111100000 000000011100000000000 0000012333455666666666655
Q ss_pred CCCcccchhhhHHhHhcC-CHHHHHHHHHHhhcc-CCCCCcccHHHHHHHhh-cccCCCcchhHHHHHhhhCCCCCchHH
Q 001763 487 NQDNVSWNAIIVGYVQEG-DVFEAFNMFRRMNLV-GIVPDDVSSASILSACA-NIQGLPQGEQVHCFSVKTSLETSNIYV 563 (1017)
Q Consensus 487 ~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 563 (1017)
..|...+..+..--..+= -..+-.++|+.+--. -..-+......+..... +..+-+.... -....-.++.. ++.+
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r-~~~~sl~~l~~-~~dl 246 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTR-NEDESLIGLAE-NLDL 246 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccccc-Cchhhhhhhhh-cHHH
Confidence 544444333221110000 001111122110000 00111111111211110 0000000000 00011122233 6677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCCCch---hHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCC
Q 001763 564 GSSLIDMYVKCGFIGAAHKVLSCMPQRNVV---SMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGP 639 (1017)
Q Consensus 564 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 639 (1017)
..+..+-+...+++.+..++++...+.|+. .+..-|..+...|.. +-..+=.+|.+
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-------------------- 306 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-------------------- 306 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--------------------
Confidence 777788888888888888888887765443 222223334444444 44444444433
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
.- |..+..+.+++-.|.-.|+..+|++.|.+... +.--..|-.++..|+-.|+.++|+..|
T Consensus 307 ---------------~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 307 ---------------LY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred ---------------hC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence 33 67778888888888888999999999987665 445578999999999999999999998
Q ss_pred HHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----
Q 001763 718 REMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE---- 792 (1017)
Q Consensus 718 ~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---- 792 (1017)
...-+. -|. ..-+.-+.--|...++++.|.+.|.++....|. |+.+.+-++-+....+.+.+|...|.....
T Consensus 370 ~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 370 FTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 887653 121 111222334577789999999999998888776 888999999888888999999999886652
Q ss_pred CC-----hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 793 RN-----YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 793 ~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
.+ ..++|+.++.+|.+.+++++|+..|++.+. ..| |..++.+++-.|...|+++.|++.|.+.+. +.|+
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~ 521 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPD 521 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCc
Confidence 11 123577888888888888888888888888 445 446777788788888888888888888765 6676
Q ss_pred chhHHHH
Q 001763 867 VDHCACM 873 (1017)
Q Consensus 867 ~~~~~~l 873 (1017)
...-..+
T Consensus 522 n~~~~~l 528 (611)
T KOG1173|consen 522 NIFISEL 528 (611)
T ss_pred cHHHHHH
Confidence 5544433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-11 Score=136.14 Aligned_cols=281 Identities=10% Similarity=0.051 Sum_probs=191.4
Q ss_pred HHhcCChHHHHHHHhhCCC-CCC-ceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH--hHHHHHHHHhccCcHHH
Q 001763 672 YMNSKRNTDARLLFTEFPN-PKS-TVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA--TFVSVLRACAVLSSLRD 747 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~--t~~~ll~~~~~~~~~~~ 747 (1017)
-...|+++.|.+.+.+..+ .++ ...+-.....+.+.|++++|.+.+.+..+. .|+.. .-......+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3456777777777766554 122 222333345566678888888888887654 34432 23334666777888888
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHH----HHHHHHHhCCCHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWN----SMIVGFAKNGYAEDALKVFHE 821 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~----~l~~~~~~~g~~~~A~~~~~~ 821 (1017)
|...++.+.+..|. ++.+...+..+|...|++++|.+.+....+.+.. ..+. ....+....+..+++.+.+.+
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888888888876 7778888888999999999999888887753221 0111 111222333444444556666
Q ss_pred HHHCCCCC-----ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh---HHHHHHhhhccCCHHHHHHHHHhC
Q 001763 822 MKETQAMP-----DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH---CACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 822 m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.+. .| +...+..+...+...|+.++|.+.+++..+ ..|+... .....-.....++.+++++.+++.
T Consensus 251 ~~~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 251 WWKN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 6653 24 446677788888899999999999999887 3444332 122222234457788888888774
Q ss_pred -CCCC-CH--HHHHHHHHHHHhcCCchHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 894 -TFEP-DS--RIWTTLLGACGVHRDDIRGRLAAK--KLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 894 -~~~p-~~--~~~~~ll~~~~~~g~~~~a~~~~~--~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
...| |+ ....++++.|...|++++|...++ ++++..|++. .+..|+.++.+.|+.++|.++|++-.+
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445 34 567788899999999999999999 5888888554 477999999999999999999987543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.5e-10 Score=115.06 Aligned_cols=275 Identities=11% Similarity=0.070 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHH-HHHhcCC--hHH-HHHH
Q 001763 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLS-MYMNSKR--NTD-ARLL 684 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~-~~~~~g~--~~~-A~~~ 684 (1017)
++++-.+.....|+.-+...-+....+.-...|+++|..+|+.+++.. |-...-.....+ +|.+..+ +.- |..+
T Consensus 245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD--PYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND--PYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 666666666666655444433333333445567777777777777664 322222222222 2233221 111 2222
Q ss_pred HhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 001763 685 FTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD 763 (1017)
Q Consensus 685 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 763 (1017)
+ .+.+ -.+.|...++.-|.-.++.++|+..|++.++. .|. ...|+-+..-+...++...|.+.+..+++.++. |
T Consensus 323 ~-~idK-yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 323 S-NIDK-YRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred H-Hhcc-CCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 1 1222 23445556666666777777777777777764 343 344555556677777777777777777777665 6
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHc
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTAC 841 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 841 (1017)
-..|..|+.+|.-.+...=|.-.|++... |+....|.+|+.+|.+.++.++|++.|......| +.+...+..|+..|
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLy 476 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLY 476 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHH
Confidence 77777777777777777777777776654 4444477777777777777777777777777654 22346677777777
Q ss_pred ccCCcHHHHHHHHHHhhhhc---C-CCcC-chhHHHHHHhhhccCCHHHHHHHHH
Q 001763 842 SHAGRVSEGRQIFETMVSCH---G-IQPR-VDHCACMVDLLGRWGFLKEAEEFIE 891 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~~~---~-~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~ 891 (1017)
.+.++.++|...|++.++.. | +.|+ ...-.-|..-+-+.+++++|.....
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 77777777777777766532 1 1221 1222223444556666666655443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-10 Score=113.12 Aligned_cols=370 Identities=9% Similarity=0.039 Sum_probs=267.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCC-CchhHHHHHHHHhhCCc-h-H--------------HHHHHHHHHHcCC
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR-NVVSMNALIAGYAQNNV-E-D--------------AVVLYRGMQTEGL 622 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~-~-~--------------A~~l~~~m~~~g~ 622 (1017)
+.....-.+..|-..|+-+.|.....+.+.. ....-|.|+.-+.++|. . + |++.+.-..+.++
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 6667777888899999999999998888753 33344444443333321 1 2 2233333333333
Q ss_pred CC--------------ChHHHHHH-HH--hccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 001763 623 SP--------------NDITFTSL-LD--ACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLF 685 (1017)
Q Consensus 623 ~p--------------~~~t~~~l-l~--a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 685 (1017)
+. +..-|.++ +. |.+..++...+.+.+-.+.....-|.+......++++|...|+..+|+..|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 22 22222222 22 334455666666666666666555789999999999999999999999999
Q ss_pred hhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC
Q 001763 686 TEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD 763 (1017)
Q Consensus 686 ~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 763 (1017)
++... |.++.........+.+.|+.++-..+...+.... +-...-|..-+......++++.|..+-++.++.++. +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 98765 3333343444555678899998888888876532 122333444445556778999999999999988876 7
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH-H
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVL-T 839 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~-~ 839 (1017)
...+..-+.++...|+.++|.-.|..... |....+|.-++.+|...|++.||..+-++.... -|+. .++..++ .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 77888888999999999999999997665 434459999999999999999999998887773 4544 4554443 3
Q ss_pred Hcc-cCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCch
Q 001763 840 ACS-HAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGVHRDDI 916 (1017)
Q Consensus 840 ~~~-~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~ 916 (1017)
.|. ..-.-++|.+++++-++ +.|+.. ....+..++.+.|+.++++.++++. ...||......|+......+...
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 343 33345789999998776 788754 5667788999999999999999985 67899999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchH
Q 001763 917 RGRLAAKKLIELEPENPSPY 936 (1017)
Q Consensus 917 ~a~~~~~~~l~~~p~~~~~~ 936 (1017)
+|...|.+++.++|+|-.+.
T Consensus 489 ~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhcCccchHHH
Confidence 99999999999999765443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-11 Score=132.74 Aligned_cols=226 Identities=12% Similarity=0.055 Sum_probs=108.7
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHH
Q 001763 669 LSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLR 746 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~ 746 (1017)
+..+...|+++.|...++...+ |.+......+...|.+.|++++|++++.++.+.+..++.. ...+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHH----------
Confidence 5566666666666666665544 4455555556666666666666666666666554332110 00000
Q ss_pred HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 747 ~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..++..++....+..+.+...++++.++. ++....+..++..+...|+.++|.+++++.++
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00111122222222233444444444432 22222445555555555555555555555555
Q ss_pred CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHHHHH
Q 001763 825 TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSRIWT 903 (1017)
Q Consensus 825 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~ 903 (1017)
. .||... .++.+....|+.+++++..+...+.+ +-++..+.++..++.+.|++++|.+.+++. ...|+...+.
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 2 222211 11222223355555555555555421 122333445555555555555555555553 3456655555
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.|..++...|+.++|...+++.+.+
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556666666666666666666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-13 Score=139.82 Aligned_cols=255 Identities=13% Similarity=0.185 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhC-CC---CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhc
Q 001763 666 IALLSMYMNSKRNTDARLLFTEF-PN---PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAV 741 (1017)
Q Consensus 666 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 741 (1017)
..++.++.+.|++++|.+++++. .. +.+...|..+.......++.++|+..++++...+.. +...+..++.. ..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 46688888889999999988542 22 356667777777777888999999999998875422 33445555555 68
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+++++|..+.....+.. +++..+..++..|.+.|+++++.++++++.. ++....|..++..+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999998887765544 3566777888899999999999999988553 2223378889999999999999999
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CC
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TF 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~ 895 (1017)
.+++.++ ..|+. .....++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...+++. ..
T Consensus 168 ~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 168 DYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 9999999 57875 56778888999999999999999888773 2556677888999999999999999999986 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.| |+.+...++.++...|+.++|..+.+++++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp STT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 55 6667788889999999999999999988764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-07 Score=101.71 Aligned_cols=644 Identities=13% Similarity=0.088 Sum_probs=312.4
Q ss_pred CchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC
Q 001763 206 NVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN 285 (1017)
Q Consensus 206 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (1017)
++.+|..+|-+-.. -...|..|....+|++|+.+-+. .|.+.-...-.+-++++...|+-++|-++ +.
T Consensus 546 kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~ 613 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----KE 613 (1636)
T ss_pred hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh----cc
Confidence 56677777643211 23345566666777777766432 23222222233444555556666665543 22
Q ss_pred CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHH
Q 001763 286 PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLI 365 (1017)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 365 (1017)
.+-.+ -+-|..|.+.|.+-.|......=.. +..|......+..++.+..-+++|-.+|+.+.. +..-+
T Consensus 614 sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkal 681 (1636)
T KOG3616|consen 614 SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKAL 681 (1636)
T ss_pred ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHH
Confidence 22222 2345667777777666654322111 223333333333333333333333333322211 00111
Q ss_pred HHHHccCChhHHHHHHhhcCCCCcch-HHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhH
Q 001763 366 NMYAKCEKMESAKKVFDSLDERNAVL-WNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGR 444 (1017)
Q Consensus 366 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 444 (1017)
.+|-+-.-+.+|.++-+-.-...++. =..-..-+.+.|+++.|+.-|-+... ....+.+......+.+|.
T Consensus 682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhH
Confidence 22222222222222222111111111 11122333445555555554443221 112233334455666666
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCC
Q 001763 445 QLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPD 524 (1017)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 524 (1017)
.+++.+.+.... ..-|.-+.+.|+..|+++.|.++|-+.. .++-.|..|.++|++++|.++-.+... |.
T Consensus 753 ~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~----~e 821 (1636)
T KOG3616|consen 753 SILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG----PE 821 (1636)
T ss_pred hHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC----ch
Confidence 666666554321 1224455666777777777777776532 355566777777777777766554321 21
Q ss_pred cccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhh
Q 001763 525 DVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQ 604 (1017)
Q Consensus 525 ~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 604 (1017)
. ....|-+-..-.-+.|++.+|.+++-.+..|+. -|..|-+
T Consensus 822 ~----------------------------------t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk 862 (1636)
T KOG3616|consen 822 A----------------------------------TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDK 862 (1636)
T ss_pred h----------------------------------HHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHh
Confidence 1 333444444555566777777777766655542 3455666
Q ss_pred CCch-HHHHHHHHHHHcCCCCCh--HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHH
Q 001763 605 NNVE-DAVVLYRGMQTEGLSPND--ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDA 681 (1017)
Q Consensus 605 ~~~~-~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 681 (1017)
+|.. +.+++..+- .||. .|-..+..-+...|++..|.+-+-.+ .-+.+-++||...+.|++|
T Consensus 863 ~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea----------~d~kaavnmyk~s~lw~da 927 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA----------GDFKAAVNMYKASELWEDA 927 (1636)
T ss_pred hCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh----------hhHHHHHHHhhhhhhHHHH
Confidence 6665 555555442 2332 23334444455567777666554322 1234567888888888888
Q ss_pred HHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCC
Q 001763 682 RLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYD 761 (1017)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 761 (1017)
.++-+.-.. .|.. .......++.--.+.|++++++. | .+...++-.+..+.++-|..+-....+...
T Consensus 928 yriaktegg-~n~~--k~v~flwaksiggdaavkllnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~- 994 (1636)
T KOG3616|consen 928 YRIAKTEGG-ANAE--KHVAFLWAKSIGGDAAVKLLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM- 994 (1636)
T ss_pred HHHHhcccc-ccHH--HHHHHHHHHhhCcHHHHHHHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC-
Confidence 887665433 2211 11111122222234556655542 1 011122223445556666555544443322
Q ss_pred CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 001763 762 LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY-VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA 840 (1017)
Q Consensus 762 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 840 (1017)
..+...+...+...|++++|.+.+-+..+-+. ..+|-.-+- .+++ -+.++.|-+|.... .+
T Consensus 995 --~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavp-----srfd------~e~ir~gnkpe~av-----~m 1056 (1636)
T KOG3616|consen 995 --GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVP-----SRFD------AEFIRAGNKPEEAV-----EM 1056 (1636)
T ss_pred --ccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhccc-----chhh------HHHHHcCCChHHHH-----HH
Confidence 34555667778889999999888877666332 235542211 1111 11223333333221 12
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHH-------------hhhccCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVD-------------LLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLG 907 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~-------------~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~ 907 (1017)
+.+..+|..|.++-+.-.+ ..-++.|..-.. .+.|+++.+-|+.++.+...-|| -+.
T Consensus 1057 fi~dndwa~aervae~h~~----~~l~dv~tgqar~aiee~d~~kae~fllrankp~i~l~yf~e~~lw~d------alr 1126 (1636)
T KOG3616|consen 1057 FIHDNDWAAAERVAEAHCE----DLLADVLTGQARGAIEEGDFLKAEGFLLRANKPDIALNYFIEAELWPD------ALR 1126 (1636)
T ss_pred hhhcccHHHHHHHHHhhCh----hhhHHHHhhhhhccccccchhhhhhheeecCCCchHHHHHHHhccChH------HHH
Confidence 3445555555544333211 001112211111 23344444444444444333333 333
Q ss_pred HHHh---cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCcc--CCceeEEEECCEEEEE
Q 001763 908 ACGV---HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKK--FPGCSWIVLGQNTNFF 982 (1017)
Q Consensus 908 ~~~~---~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~--~~g~s~i~~~~~~~~f 982 (1017)
.|.. |.-...-++.-+.+++....-...++.-+.-+.+.|+|.+|...+-++....... ....+|-...+.+..|
T Consensus 1127 i~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikf 1206 (1636)
T KOG3616|consen 1127 IAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKF 1206 (1636)
T ss_pred HHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhh
Confidence 3321 1111111233344566777778889999999999999999998887774433222 2455666666777788
Q ss_pred ecCCCC
Q 001763 983 VAGDTS 988 (1017)
Q Consensus 983 ~~~d~~ 988 (1017)
..||.+
T Consensus 1207 l~~d~n 1212 (1636)
T KOG3616|consen 1207 LMGDEN 1212 (1636)
T ss_pred cCCccc
Confidence 888875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-10 Score=128.31 Aligned_cols=283 Identities=9% Similarity=-0.015 Sum_probs=182.0
Q ss_pred CCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCc--eeehhhhhhcccCCCchHHHH
Q 001763 639 PYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKST--VLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 639 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~ 715 (1017)
.|+++.|.+.+....+.. |.....+...+..+.+.|+.+.|.+.+.+..+ .++. ...-+....+.+.|++++|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 455566665555554443 23344444556666667777777777766433 1111 122223555666777777777
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHh-HHHhHH---H----hcCCHHHHHHHH
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS-ALIDMY---A----KCGDVKRSAQVF 787 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~y---~----~~g~~~~A~~~~ 787 (1017)
.++++.+.. +-+...+..+..++...|+++++.+.+..+.+.+.. +...+. .-..++ . .....+...+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777653 223445666667777777777777777777776543 222221 111111 1 122234444455
Q ss_pred HhccC---CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHh---HHHHHHHcccCCcHHHHHHHHHHhhhhc
Q 001763 788 DEMAE---RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVT---FLGVLTACSHAGRVSEGRQIFETMVSCH 861 (1017)
Q Consensus 788 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 861 (1017)
+..+. ++.. .+..++..+...|+.++|++.+++.++. .||... ...........++.+++.+.+++..+.+
T Consensus 253 ~~~p~~~~~~~~-l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIA-LKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 55543 2444 7888899999999999999999999984 466542 1222222344688889999998888743
Q ss_pred CCCcCchhHHHHHHhhhccCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 862 GIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ---LTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 862 ~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
...|+.....++..++.+.|++++|.+.+++ ....||+.++..++..+...|+.++|...+++.+.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333324566888999999999999999993 356899988888989999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.3e-11 Score=120.72 Aligned_cols=217 Identities=9% Similarity=0.042 Sum_probs=142.5
Q ss_pred CCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHH
Q 001763 707 NDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQV 786 (1017)
Q Consensus 707 ~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 786 (1017)
.|+...|.+.|+..+.....++.. |.-+..+|....+.++....|..+.+.++. ++.+|..-+.++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 355555555566655543222221 555566677777777777777777777776 777777777777777888888888
Q ss_pred HHhccCC--ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC
Q 001763 787 FDEMAER--NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI 863 (1017)
Q Consensus 787 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 863 (1017)
|++...- ..+.+|..+..+..+.+++++++..|++.++. -|+. ..|+....++..++++++|.+.|+..++ +
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---L 491 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---L 491 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---h
Confidence 8777663 33335566666666777788888888887774 4554 5677777777778888888888887766 4
Q ss_pred CcC-------chhHHHHHH-hhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 864 QPR-------VDHCACMVD-LLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 864 ~p~-------~~~~~~l~~-~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
.|+ +..+-.=.- ++.=.+++.+|++++++. .+.|... .+.+|+..-.++|+.++|+++|++.+.+.-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444 111111111 122236788888888775 4666544 677777777777888888888888777644
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-10 Score=120.54 Aligned_cols=399 Identities=14% Similarity=0.063 Sum_probs=240.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHH-HHHHHH
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDIT-FTSLLD 634 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~ 634 (1017)
+..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|.. .|+.++++-....-.|+..+ +...-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 889999999999999999999999998764 3456899999999998988 99999988776554565544 433444
Q ss_pred hcc-CCCccchhhHHHHHHHHhC--CC-CCchHHHHHHHHHHHhcC----C-------hHHHHHHHhhCCC--CCCceee
Q 001763 635 ACD-GPYKFHLGTQIHCLIVKKG--LL-FDDDFLHIALLSMYMNSK----R-------NTDARLLFTEFPN--PKSTVLW 697 (1017)
Q Consensus 635 a~~-~~~~~~~a~~~~~~~~~~~--~~-p~~~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~~~--~~~~~~~ 697 (1017)
.|. +.+.+++|..+..+++... .. .-.+..+..++-.|...- . ..++.+.+++..+ |.|+..-
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~i 481 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVI 481 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence 453 4588899998888877621 11 122334444444443321 1 1223333333322 2333222
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
..+..-|+..++.+.|+...++..+.+-.-+...|.-+.-..+..+++.+|..+.+..++.-.. |-.....-+..-..-
T Consensus 482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhc
Confidence 2233335555666666666666666544555555555555556666666666666555432221 111111111111223
Q ss_pred CCHHHHHHHHHhccC-----CChhH------HHHHHHHHHHhCCCHHHHHHHHHHHHH--------CC---------CC-
Q 001763 778 GDVKRSAQVFDEMAE-----RNYVI------SWNSMIVGFAKNGYAEDALKVFHEMKE--------TQ---------AM- 828 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~-----~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~g---------~~- 828 (1017)
|+.++|......+.. +++.. .-..-...-..+++..+|.+...++.. .| +.
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 333333333222211 00000 000000001111222223222222210 01 11
Q ss_pred -CChH------hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCH
Q 001763 829 -PDDV------TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS 899 (1017)
Q Consensus 829 -p~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~ 899 (1017)
|+.. .+......+...+..++|.-.+.+..+ +.|- ...|.-....+...|+++||.+.|... .++|+.
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 2321 223445567888888999887777654 5554 445666678899999999999988764 688865
Q ss_pred H-HHHHHHHHHHhcCCchHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 900 R-IWTTLLGACGVHRDDIRGRL--AAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 900 ~-~~~~ll~~~~~~g~~~~a~~--~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+ +..+++..+-.-|+-..|+. ....+++++|.|+.+++.||.++.+.|+.++|.+.+....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 5 78888888888898888887 999999999999999999999999999999999999877664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-07 Score=101.18 Aligned_cols=621 Identities=11% Similarity=0.081 Sum_probs=306.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhcCC-CCccchH-----HHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 001763 260 FVTVINVCFNLGRLDEARELFAQMQN-PNVVAWN-----VMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGI 333 (1017)
Q Consensus 260 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (1017)
+..+.+.|.+.|-+..|++.+..+.+ ...+.-+ --+..|.-.-.++++.+.++.|...+++.|..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 66778888889999888888877654 1111111 12334555667899999999999988888877776666655
Q ss_pred hcccchhHHHHHHHHHHHh-----------CCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCC---------------
Q 001763 334 SSLAALDFGLIVHAEAIKQ-----------GLYSNVYVASSLINMYAKCEKMESAKKVFDSLDER--------------- 387 (1017)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------- 387 (1017)
...-..+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-..-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 5544444444444443321 34557777778899999999999999888653311
Q ss_pred ---------CcchH-------------HHHHHHHHhCCChhHHHHHHHhhhhcCCCCC-----------hhcHHHHHHhh
Q 001763 388 ---------NAVLW-------------NALLGGYSQNCYAHEVVDLFFAMKSSGFHAD-----------DFTYTSILSSC 434 (1017)
Q Consensus 388 ---------~~~~~-------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~a~ 434 (1017)
|..-+ ...|..|.+.-++...-.+...+.+-.+.-+ .+...-+..-+
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 00001 1122333332222222211111111100000 00111122222
Q ss_pred hcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHH
Q 001763 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFR 514 (1017)
Q Consensus 435 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (1017)
.+.+++..-..+++..+..|.. |..++|+|...|...++-.+- ++. .|..-=+..+.-||...++.-|.-.|+
T Consensus 849 EkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~--fLk----eN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER--FLK----ENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH--hcc----cCCcchhhHHhhhhcccCCceEEEeec
Confidence 3333333344444444444432 445555555555544332211 111 111111122333444444433332222
Q ss_pred HhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcC-----C-
Q 001763 515 RMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCM-----P- 588 (1017)
Q Consensus 515 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----~- 588 (1017)
+-.. | .-++..|-.... |...-+.-+...|...|..++.- .-..=+.++++. +
T Consensus 922 rGqc-----D----~elI~vcNeNSl-------fK~~aRYlv~R~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E 980 (1666)
T KOG0985|consen 922 RGQC-----D----LELINVCNENSL-------FKSQARYLVERSDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPE 980 (1666)
T ss_pred ccCC-----c----HHHHHhcCchhH-------HHHHHHHHHhccChHHHHHHHhc-----cChHHHHHHHHHHHhcCCc
Confidence 2110 0 112222211111 10000000011133333332210 000001122211 1
Q ss_pred CCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCC-hHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHH
Q 001763 589 QRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPN-DITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHI 666 (1017)
Q Consensus 589 ~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 666 (1017)
..|+..-+..+.++...+.+ +-++++++..-..-.-+ ....-.|+-.-+-..+..+..++...+-..+.+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~-------- 1052 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP-------- 1052 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch--------
Confidence 14555566667778888887 88888888764321111 111212221111112222222222222211110
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC------------------------CCCceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 667 ALLSMYMNSKRNTDARLLFTEFPN------------------------PKSTVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 667 ~l~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
.+++.....+-+++|..+|+.... -..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 122233333444444444443221 022456777777777777777777665443
Q ss_pred CCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHH
Q 001763 723 HNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSM 802 (1017)
Q Consensus 723 ~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l 802 (1017)
-|...|.-+++++.+.|.+++-..++.++.+..-+| .+-+.|+-+|++.+++.+-++++. .++.. -...+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A-~i~~v 1200 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVA-NIQQV 1200 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCch-hHHHH
Confidence 244567777777788888877777777766655543 344567777777777777666543 23433 44556
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~ 882 (1017)
..-|...|.++.|.-+|.. ...|..|...+.+.|.+..|...-++. -+..+|-.+..++...+.
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhh
Confidence 6667777777777666543 234555556666666666665544332 223445445455544444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 883 LKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 883 ~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+.-|.- -.+.+--...-..-|..-|...|-+++-+..+|..+-++--.-+.+.-|+-+|.+-
T Consensus 1265 FrlAQi--CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1265 FRLAQI--CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhHHHh--cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 333321 00111112223445666677778888888888888888877778888888777765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-11 Score=124.12 Aligned_cols=198 Identities=13% Similarity=0.103 Sum_probs=165.9
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLT 839 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 839 (1017)
....+..++..|...|++++|.+.+++... ++....|..++..+...|++++|++.+++.++. .|+. ..+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 456778889999999999999999998765 444447888999999999999999999999984 4543 66778888
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchH
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 917 (1017)
.+...|++++|.+.|+++.+..........+..+..++.+.|++++|.+.+++. ...| +...|..++..+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999873222223456777888999999999999999875 3455 45578888888999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
|...++++++..|.++..+..++.++...|++++|....+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-11 Score=126.39 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=151.8
Q ss_pred CcHHHHHHHHHHHHHhCC---CCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 743 SSLRDGGEIHSLIFHTGY---DLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
+..+.+..-+.+++.... ......|..++.+|.+.|++++|...|++..+ |+....|+.++..+...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345566666666664322 22345688888999999999999999988765 4445589999999999999999999
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-C-
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-T- 894 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~- 894 (1017)
.|++.++ +.|+. .++..++.++...|++++|++.|++..+ ..|+.........++...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 67866 6778888888899999999999999877 4554432222223445678899999988653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHH-------HhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 895 FEPDSRIWTTLLGACGVHRDDIRGRLAAKKL-------IELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 895 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
..|+ .|.. .......|+...+ ..++.+ .++.|+.+.+|+.||.+|...|++++|+..+++..+.++
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2333 3432 1222234555443 233333 366777788999999999999999999999988886654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-09 Score=112.42 Aligned_cols=449 Identities=14% Similarity=0.081 Sum_probs=268.0
Q ss_pred HHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCc
Q 001763 449 VIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDD 525 (1017)
Q Consensus 449 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 525 (1017)
++.-..+..|..+|..|.-...++|+++.+.+.|++... .....|+.+...|.-.|....|+.+++.-....-.|+.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 333345667889999999999999999999999998764 34457999999999999999999999987765444655
Q ss_pred ccHHHHHH-Hhh-cccCCCcchhHHHHHhhhCCCC---CchHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHH
Q 001763 526 VSSASILS-ACA-NIQGLPQGEQVHCFSVKTSLET---SNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIA 600 (1017)
Q Consensus 526 ~t~~~ll~-a~~-~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 600 (1017)
.+-..+.. .|. +.+.+++|...-..++...... -.+..+-.+.-+|...-. +.+ +|.
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~--~~s---- 454 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QAN--LKS---- 454 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCC--ChH----
Confidence 54443333 343 3455555555544444311000 011112222222211100 000 000
Q ss_pred HHhhCCch-HHHHHHHHHHHc-CCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 001763 601 GYAQNNVE-DAVVLYRGMQTE-GLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRN 678 (1017)
Q Consensus 601 ~~~~~~~~-~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 678 (1017)
-+.... ++++.+++..+. +-.|+..-|.++-.| ..++++.|.+.....++.+-. .+...+..|+-++...+++
T Consensus 455 --eR~~~h~kslqale~av~~d~~dp~~if~lalq~A--~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 455 --ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA--EQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH--HHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhh
Confidence 001112 677777777654 344555555555443 456788888888888877543 7777888888888888888
Q ss_pred HHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH
Q 001763 679 TDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF 756 (1017)
Q Consensus 679 ~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 756 (1017)
.+|+.+.+.... +.|.+....-+..-..-++.++|+.....++.- --+...+. ..++-....+....+.
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~ 600 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLH 600 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccc
Confidence 888888776554 333332222233333356777777666666431 00000000 0011001111111110
Q ss_pred --HhCCCCCcchHhHHHhHHHhcC---CHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001763 757 --HTGYDLDEITGSALIDMYAKCG---DVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826 (1017)
Q Consensus 757 --~~~~~~~~~~~~~l~~~y~~~g---~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 826 (1017)
...+.-.+.++..+.......+ ..+.....+.....++.. ..|......+...++.++|.-.+.+...
T Consensus 601 la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-- 678 (799)
T KOG4162|consen 601 LALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-- 678 (799)
T ss_pred cCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--
Confidence 0011112233333333222111 111111222222222211 2456667778888889999888888777
Q ss_pred CCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHH--HHHhC-CCCC-CHH
Q 001763 827 AMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEE--FIEQL-TFEP-DSR 900 (1017)
Q Consensus 827 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~--~~~~~-~~~p-~~~ 900 (1017)
+.|-. ..|...+..+...|+++||.+.|..... +.|+ +.....+..+|.+.|+..-|.+ ++..+ .+.| ++.
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 45544 5566666778889999999999998866 6665 5677888899999998766666 76654 6777 566
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
.|..|+-...+.||.+.|...|..++++++.+|.
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999999988764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.9e-11 Score=136.19 Aligned_cols=245 Identities=12% Similarity=0.013 Sum_probs=185.9
Q ss_pred CchHHHHHHHHHHHCCCCcCH-HhHHHHHHHHh---------ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcC
Q 001763 709 SNYEALHFYREMRSHNVLPDQ-ATFVSVLRACA---------VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG 778 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g 778 (1017)
..++|+.+|++.++. .|+. ..+..+..++. ..+++++|...++++++.++. +...+..++.++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 457888889888874 5654 34444443332 234589999999999999887 8889999999999999
Q ss_pred CHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHH
Q 001763 779 DVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 779 ~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
++++|+..|++..+ |+....|..++..+...|++++|+..++++++ +.|+.. .+..++.++...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998876 55555889999999999999999999999999 567653 33444555667899999999999
Q ss_pred HhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 856 TMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 856 ~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
++.+. ..|+ +..+..+..+|...|++++|.+.++++ +..|+.. .+..+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 2454 445777888999999999999999886 4566555 4444555566666 47888788877765544
Q ss_pred CchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 933 PSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 933 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44555588999999998877766 6666543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-08 Score=103.52 Aligned_cols=421 Identities=13% Similarity=0.097 Sum_probs=210.7
Q ss_pred CCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHH
Q 001763 271 GRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHA 347 (1017)
Q Consensus 271 g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 347 (1017)
+++..|..+|++... .+...|--.+..-.++..+..|..+++..+. +-|...
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVd----------------------- 141 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVD----------------------- 141 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHH-----------------------
Confidence 344455555555543 3445566666666677777777777777665 333221
Q ss_pred HHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcC--CCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChh
Q 001763 348 EAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLD--ERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDF 425 (1017)
Q Consensus 348 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 425 (1017)
..|...+.+=-..|++..|.++|++-. +|+..+|++.|..-.+.+..+.|..++++..- +.|+..
T Consensus 142 -----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~ 208 (677)
T KOG1915|consen 142 -----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVS 208 (677)
T ss_pred -----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHH
Confidence 112222333333455555566655533 35555666666665666666666666665554 446666
Q ss_pred cHHHHHHhhhcccchHhhHHHHHHHHHh-c-CCchhhHHHHHHHHhhccCChhHHHHHHhhcCC----CC-cccchhhhH
Q 001763 426 TYTSILSSCACLEYLEMGRQLHAVIIKN-K-LATNLYVGNALVDMYAKSRALEEARKQFERIQN----QD-NVSWNAIIV 498 (1017)
Q Consensus 426 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~-~~~~~~li~ 498 (1017)
+|..-..-=.+.|+...+..++...++. | -.-+...+.+....-.++..++.|..+|+-..+ .. ...|.....
T Consensus 209 ~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 209 NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 6555555555556666666666555543 1 111233344444444455666666666544322 10 111222222
Q ss_pred HhHhcCCHH---HHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcC
Q 001763 499 GYVQEGDVF---EAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCG 575 (1017)
Q Consensus 499 ~~~~~g~~~---~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g 575 (1017)
---+.|+.. +++--=++++ +...++.+ |-|-.++--.++.-...|
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~q------------------------------YE~~v~~n--p~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQ------------------------------YEKEVSKN--PYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhH------------------------------HHHHHHhC--CCCchHHHHHHHHHHhcC
Confidence 112223322 2221111111 01111110 114455555666666677
Q ss_pred CHHHHHHHHhcCCCCCc-----hhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHH
Q 001763 576 FIGAAHKVLSCMPQRNV-----VSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHC 650 (1017)
Q Consensus 576 ~~~~A~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 650 (1017)
+.+.-.++|++....-+ ..|...|-.... ..+|.++ ...+++.+++++.
T Consensus 337 ~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin------YalyeEl--------------------e~ed~ertr~vyq 390 (677)
T KOG1915|consen 337 DKDRIRETYERAIANVPPASEKRYWRRYIYLWIN------YALYEEL--------------------EAEDVERTRQVYQ 390 (677)
T ss_pred CHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH------HHHHHHH--------------------HhhhHHHHHHHHH
Confidence 77777777776542111 123322211100 0122222 2345566666666
Q ss_pred HHHHhCCCCCchHHHHHHHHHH----HhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCC
Q 001763 651 LIVKKGLLFDDDFLHIALLSMY----MNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVL 726 (1017)
Q Consensus 651 ~~~~~~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 726 (1017)
.+++. .|........+--|| .++.++..|++++..... ..
T Consensus 391 ~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG----------------------------------~c 434 (677)
T KOG1915|consen 391 ACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG----------------------------------KC 434 (677)
T ss_pred HHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc----------------------------------cC
Confidence 66662 244444333333333 355666666665554433 34
Q ss_pred cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh----hHHHHHH
Q 001763 727 PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY----VISWNSM 802 (1017)
Q Consensus 727 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~l 802 (1017)
|-..+|..-|..-.+.++++....+++..++.+|. +..+|...+..=...|+.+.|..+|+-....+. ...|.+.
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaY 513 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAY 513 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 55555555555555666666666666666666655 556666666666666666666666665443211 1356666
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 001763 803 IVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
|.--...|.+++|-.+|+++++
T Consensus 514 IdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 514 IDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhhhhhcchHHHHHHHHHHHHH
Confidence 6666666667777777776666
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-07 Score=97.30 Aligned_cols=511 Identities=15% Similarity=0.125 Sum_probs=243.2
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHhc-CCCCChhhHHHHH
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRKA-GVKSSRSTLGSVL 330 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll 330 (1017)
+..|+...|-.+-+++ +.++-.+.+|+ ..|-..+..+.++|++......|+..... -+......|...+
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl 145 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYL 145 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHH
Confidence 3445555555444443 33444444443 45666667777777777777777766542 2233344566666
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHH
Q 001763 331 SGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVD 410 (1017)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 410 (1017)
......+-++.+..+++.-++.. +..-+.-|.-+++.+++++|.+.+..+...+... .+.|
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~g------- 206 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKG------- 206 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhcc-------
Confidence 66666666666666666665542 2234445555666666666666665554332110 0000
Q ss_pred HHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcC--Cch--hhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 411 LFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKL--ATN--LYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 411 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
+.+...|.-+-...++..+.-.... .+.+++.|+ -+| ...|++|.+-|.+.|.++.|+.+|++..
T Consensus 207 ----------kSn~qlw~elcdlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 207 ----------KSNHQLWLELCDLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred ----------cchhhHHHHHHHHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 0111111111111111111111111 112222222 122 3567888888888888888888888765
Q ss_pred CC--CcccchhhhHHhHhcCCHHHHHHHHHHhh--ccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchH
Q 001763 487 NQ--DNVSWNAIIVGYVQEGDVFEAFNMFRRMN--LVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIY 562 (1017)
Q Consensus 487 ~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 562 (1017)
.. .+.-|+.+-++|++-....-+..+= +. +.|-.-+...+..-+..+ ..++... +.
T Consensus 276 ~~v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl~~~~a~~-------------e~lm~rr-----~~ 335 (835)
T KOG2047|consen 276 QTVMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDLELHMARF-------------ESLMNRR-----PL 335 (835)
T ss_pred HhheehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhHHHHHHHH-------------HHHHhcc-----ch
Confidence 42 3334555556665532211111110 10 011111111111111111 1111000 00
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh------HHHHHHHHh
Q 001763 563 VGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND------ITFTSLLDA 635 (1017)
Q Consensus 563 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~------~t~~~ll~a 635 (1017)
..|+ ++-+-...++..|..-+.. ..|.. +-+..|.+..+. +.|-. ..|..+..-
T Consensus 336 ~lNs----------------VlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fakl 396 (835)
T KOG2047|consen 336 LLNS----------------VLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKL 396 (835)
T ss_pred HHHH----------------HHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHH
Confidence 0010 0000001233344433322 22333 556666666554 44432 123344444
Q ss_pred ccCCCccchhhHHHHHHHHhCCCC--CchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLF--DDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYE 712 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 712 (1017)
+...|+++.|+.+++...+..+.- +-..++..-+++-.+..+++.|.++.+.... |.+.. ..+...+.+-+
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~------~~~yd~~~pvQ 470 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE------LEYYDNSEPVQ 470 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh------hhhhcCCCcHH
Confidence 455555555555555555443320 1133444445555555555555555544332 11111 11112222111
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC
Q 001763 713 ALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 792 (1017)
+. +.-+...|...++.-...|-++..+.+++.+++..+. .+.+-...+..+.....++++.+++++-..
T Consensus 471 ~r----------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 471 AR----------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred HH----------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 10 0112234555566666677888888888888887765 444444445555666678888888886543
Q ss_pred ----CChhHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--cccCCcHHHHHHHHHHhhh
Q 001763 793 ----RNYVISWNSMIVGFAKN---GYAEDALKVFHEMKETQAMPDDVTFLGVLTA--CSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 793 ----~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~~ 859 (1017)
|+....|++.+.-+.+. -..+.|..+|++.++ |..|...-+..|+-+ =..-|....|+.+|+++..
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55556787766555432 256888888888888 566665322223222 2334777777777777543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-09 Score=105.71 Aligned_cols=286 Identities=10% Similarity=0.080 Sum_probs=160.4
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCce------eehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTV------LWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATF 732 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~ 732 (1017)
|...+...+|+++|.+.|+.+.|+++-+.+...||.. +.-.|..-|...|-++.|..+|..+.+.+ .--..+.
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~Al 144 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGAL 144 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHH
Confidence 4667778888889999999999988888776634432 22345555666777777777777776543 2223455
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHhCCCCCc----chHhHHHhHHHhcCCHHHHHHHHHhccCCChhH--HHHHHHHHH
Q 001763 733 VSVLRACAVLSSLRDGGEIHSLIFHTGYDLDE----ITGSALIDMYAKCGDVKRSAQVFDEMAERNYVI--SWNSMIVGF 806 (1017)
Q Consensus 733 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~ 806 (1017)
..|+..|....++++|+.+.+++.+.+.++.. ..|.-|...+....+.+.|..++.+....+..+ +-..+...+
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 66666677777777777776666666554321 123344455555556666666666555433321 222344455
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
...|++++|++.++...+. +|+- .+...|..+|.+.|+.+++...+..+.+ ..+..+.-..|.+......-.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGID 299 (389)
T ss_pred HhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChH
Confidence 5566666666666666653 3443 2344555566666666666666555554 2333333333333322222223
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH---HhcCCcHHHHHHHHHHHH
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIY---AALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y---~~~g~~~~a~~~~~~m~~ 961 (1017)
+ |....-+-+...|.--+ ++.|.+.. +..|++.+-.-+.+.|..
T Consensus 300 ~--------------------------------Aq~~l~~Ql~r~Pt~~g-f~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 300 A--------------------------------AQAYLTRQLRRKPTMRG-FHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred H--------------------------------HHHHHHHHHhhCCcHHH-HHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3 33333333344442221 22222221 134567777888888888
Q ss_pred cCCccCCceeEEEECCEEEEEe
Q 001763 962 KGVKKFPGCSWIVLGQNTNFFV 983 (1017)
Q Consensus 962 ~~~~~~~g~s~i~~~~~~~~f~ 983 (1017)
..++..|.+..-.-+=+.|+|.
T Consensus 347 e~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 347 EQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred HHHhhcCCceecccCCcceeee
Confidence 8888888777776665666654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=7.1e-07 Score=95.73 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCc-chHhHHHhHHHhcCCHHHHHHHHHhccC---CChh-HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDE-ITGSALIDMYAKCGDVKRSAQVFDEMAE---RNYV-ISWNSMIVGFAKNGYAEDALKVFHEM 822 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~-~~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 822 (1017)
.+.+++++++.=+..+. .......++=++.|.++.|+.++.-..+ |... .-|.+.=.--.+||+ .+.+++|
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn----edT~keM 716 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN----EDTYKEM 716 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC----HHHHHHH
Confidence 44555555554222221 2334456777889999999999875443 3221 367777777788998 3345555
Q ss_pred HH
Q 001763 823 KE 824 (1017)
Q Consensus 823 ~~ 824 (1017)
++
T Consensus 717 LR 718 (835)
T KOG2047|consen 717 LR 718 (835)
T ss_pred HH
Confidence 54
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.6e-11 Score=114.17 Aligned_cols=231 Identities=12% Similarity=0.064 Sum_probs=180.8
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
+.|..+|.+.|.+.+|.+.|+.-+.. .|-..||.-|-.+|.+..+.+.|..++...++.-|. |+.....+..++...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHHH
Confidence 35666677777777777766666654 555567777777788888888888887777766554 666666677888888
Q ss_pred CCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHH
Q 001763 778 GDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
++.++|.++++...+.+. +.+...+..+|.-.|+.+-|+..|+++++.|+. +...|.++.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888889888888776322 225556677888889999999999999998864 55778888888889999999988888
Q ss_pred HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 856 TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEP--DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 856 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+.+.. +. +| -.++|.+|.......||+..|.+.++-++-.+|++.
T Consensus 383 RAlst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 87651 11 22 245899999888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+++++|+-+-.+.|+.++|..++...+.....
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999999999999999999887765443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-08 Score=104.85 Aligned_cols=431 Identities=13% Similarity=0.075 Sum_probs=308.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccC
Q 001763 563 VGSSLIDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDG 638 (1017)
Q Consensus 563 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 638 (1017)
++--...--...+++..|+.+|+.... +++..|--.+..-.++... .|..++++....-.+.|..-| -.+..-..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~ 153 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHH
Confidence 333333333446667778888887764 5566676666666666666 888888887765333333333 22333345
Q ss_pred CCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 639 PYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 639 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
.|++..|+++|..-.+.. |+...+.+.++.-.+.+.++.|+.+++...- .|++.+|-....---++|+..-|..+|
T Consensus 154 LgNi~gaRqiferW~~w~---P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWE---PDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 688999999999888876 8889999999999999999999999998554 578888887777777889999999999
Q ss_pred HHHHHC-CC-CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCC-cchHhHHHhHHHhcCCH---HHHHHHHH---
Q 001763 718 REMRSH-NV-LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLD-EITGSALIDMYAKCGDV---KRSAQVFD--- 788 (1017)
Q Consensus 718 ~~m~~~-~~-~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~---~~A~~~~~--- 788 (1017)
...++. |- .-+...|++...--...+.++.|.-++..+++.=+... ...|-.+...=-+-|+. ++++---.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 988764 10 11223355555444567788999999998887766532 23333333333334554 44433222
Q ss_pred --hccCCCh--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--Hh---HHH--HHHHc---ccCCcHHHHHHHH
Q 001763 789 --EMAERNY--VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VT---FLG--VLTAC---SHAGRVSEGRQIF 854 (1017)
Q Consensus 789 --~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~---~~~--l~~~~---~~~g~~~~a~~~~ 854 (1017)
.+...++ -.+|.-.+..-...|+.+...+.|++.+.. +.|-. .. |.. +--+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2222222 248998898888899999999999999985 55522 11 111 11122 3578999999999
Q ss_pred HHhhhhcCCCcCch-hHHHH----HHhhhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 855 ETMVSCHGIQPRVD-HCACM----VDLLGRWGFLKEAEEFIEQL-TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 855 ~~m~~~~~~~p~~~-~~~~l----~~~l~~~g~~~eA~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
+.+++ +-|.-. ++..+ ..-..|+.++..|.+.+-.. +.-|...++...+..-.+.++++....+|++.++-
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99987 666533 44433 33347899999999999764 67788888888888888889999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 001763 929 EPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSHPNADRICAVLEDLTAS 1005 (1017)
Q Consensus 929 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~~l~~l~~~ 1005 (1017)
.|.|-.++...+.+=...|+++.|..+++...++.....|..-|-..=+ |-.....+..+..+|..|-+.++.
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId----FEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID----FEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh----hhhhcchHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999988877777666643322 777778888999999988776653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-11 Score=90.09 Aligned_cols=50 Identities=32% Similarity=0.656 Sum_probs=48.3
Q ss_pred CCchhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhc
Q 001763 119 RDILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSK 168 (1017)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (1017)
||+++||++|++|++.|++++|+++|++|.+.|+.||.+||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999975
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-10 Score=130.46 Aligned_cols=212 Identities=12% Similarity=-0.008 Sum_probs=170.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHh---------cCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCC
Q 001763 743 SSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAK---------CGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGY 811 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~---------~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 811 (1017)
+++++|...++++++..+. +...+..++.+|.. .|++++|...+++..+ |+....|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 4568999999999998876 66777777776653 3458999999998876 4444588899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHH
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
+++|+..|+++++ ..|+. ..+..+..+|...|++++|+..++++++ +.|+.. .+..+..++...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56876 5778888899999999999999999988 566543 333444456678999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 890 IEQLT--FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 890 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+++.. .+|+ +..+..++.++...|+.++|+..++++....|.+......|+..|...|+ +|....+.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 98863 2454 44566677778889999999999999999999999999999999999994 777766666543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-09 Score=101.63 Aligned_cols=496 Identities=13% Similarity=0.058 Sum_probs=252.3
Q ss_pred cchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHHHHH
Q 001763 438 EYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFNMFR 514 (1017)
Q Consensus 438 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 514 (1017)
.++..|..+++.-...+-+-...+---+..+|.+.|++++|...+..+.+ ++...|-.+...+.-.|.+.+|..+-.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433222222222223344566777888888777776654 344566666666666777777776654
Q ss_pred HhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CCc
Q 001763 515 RMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RNV 592 (1017)
Q Consensus 515 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~ 592 (1017)
+.-+ ++.....++...-+.++-++-..+|+.+.+ ...-.-+|..+.-..-.+.+|++++.++.. |+-
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 4322 223334444455555665555566655543 222334455554455568888888888764 444
Q ss_pred hhHHHHHHH-HhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHhccCCC--ccchhhHHHHHHHHhCCCCCchHHHHHH
Q 001763 593 VSMNALIAG-YAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDACDGPY--KFHLGTQIHCLIVKKGLLFDDDFLHIAL 668 (1017)
Q Consensus 593 ~~~~~li~~-~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~~l 668 (1017)
...|..+.. |.+-... -+.+++.-..+. -||. |+..=+.+|..-. +-..+.+-.+.+.+.+-. .-+.....+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~~~f~~~l~ 260 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-EYPFIEYLC 260 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-cchhHHHHH
Confidence 556655544 3444444 455555555443 2333 2222333332211 111111111222211100 111111000
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHH
Q 001763 669 LSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDG 748 (1017)
Q Consensus 669 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a 748 (1017)
-.-+.--..-+.|.+++-.+.. .-+.+--.|+-.|.+.++..+|..+.+++.- ..|-...+..+.
T Consensus 261 rHNLVvFrngEgALqVLP~L~~-~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv------------ 325 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMK-HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV------------ 325 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHh-hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH------------
Confidence 0001111122333333322211 1111222344456666666666666555421 122222221111
Q ss_pred HHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 749 GEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..+++.-......+.-|.+.|+-.-. .|.++.-.+|+..+.-..++++.+..++....
T Consensus 326 ------------------~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 326 ------------------FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred ------------------HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112222234445555554332 23333556777777777778888877777766
Q ss_pred CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-HHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHH
Q 001763 825 TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC-ACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWT 903 (1017)
Q Consensus 825 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~ 903 (1017)
--.+ |..--..+..+++..|.+.+|.++|-.+.. -.++ +...| ..+..+|.+.|+.+-|.+++-++.-+.+..+..
T Consensus 388 YF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLL 464 (557)
T KOG3785|consen 388 YFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLL 464 (557)
T ss_pred HhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHH
Confidence 4222 333334577888888888888888877644 1122 22334 344678888888888888888776555555444
Q ss_pred HHH-HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEE
Q 001763 904 TLL-GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFF 982 (1017)
Q Consensus 904 ~ll-~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f 982 (1017)
.++ +-|++.+.+=-|.+++..+-.++| +|+.+ .|+-.....++.++-...-+..|+-..-|| +|
T Consensus 465 qlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEV---vh-- 529 (557)
T KOG3785|consen 465 QLIANDCYKANEFYYAAKAFDELEILDP-TPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREV---VH-- 529 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHH---HH--
Confidence 444 669999999999999988877888 34432 355556667777776655555554222111 11
Q ss_pred ecCCCCCCChHHHHHHH
Q 001763 983 VAGDTSHPNADRICAVL 999 (1017)
Q Consensus 983 ~~~d~~~~~~~~~~~~l 999 (1017)
...++.|.+++-..+..
T Consensus 530 llr~~~nsq~E~mikvv 546 (557)
T KOG3785|consen 530 LLRMKPNSQCEFMIKVV 546 (557)
T ss_pred HHHhCCCchHHHHHHHH
Confidence 34456666665444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=115.15 Aligned_cols=236 Identities=10% Similarity=-0.044 Sum_probs=171.9
Q ss_pred ccCCCchHHHHHHHHHHHCC-CCcC--HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH
Q 001763 705 AQNDSNYEALHFYREMRSHN-VLPD--QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781 (1017)
Q Consensus 705 ~~~g~~~~A~~~~~~m~~~~-~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~ 781 (1017)
...+..+.++..+.+++... ..|+ ...|......+...|+.++|...++.+++..+. ++..|+.++..|...|+++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHH
Confidence 33466788888888888642 2333 245667777888999999999999999998886 7899999999999999999
Q ss_pred HHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 782 RSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 782 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+|...|++..+ |+...+|..++..+...|++++|++.|++.++ ..|+..........+...++.++|++.|++...
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999998865 55555899999999999999999999999999 567654222222234567889999999977654
Q ss_pred hcCCCcCchhHHHHHHhhhccCCHH--HHHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC-
Q 001763 860 CHGIQPRVDHCACMVDLLGRWGFLK--EAEEFIEQ-LT----FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP- 930 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~g~~~--eA~~~~~~-~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p- 930 (1017)
...|+...+ .++..+ .|+++ ++.+.+.+ .. ..| ....|..++..+...|+.++|+..|+++++++|
T Consensus 194 --~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 --KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred --hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 223333222 333333 44443 33333332 11 123 234799999999999999999999999999997
Q ss_pred CCCchHHHHHHHHHhcCC
Q 001763 931 ENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~g~ 948 (1017)
++.+..+.+..+....++
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 666666666665554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-10 Score=123.07 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=175.4
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCC-CCcc-hHhHHHhHHHhcCCHHHHHHHHHhccC----------
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHT-----GYD-LDEI-TGSALIDMYAKCGDVKRSAQVFDEMAE---------- 792 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~-~~~~l~~~y~~~g~~~~A~~~~~~~~~---------- 792 (1017)
.++..+...|...|+++.|...++..++. |.. |.+. ..+.++.+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556777888899999998888877654 211 2222 233477899999999999999997753
Q ss_pred CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCCC-Ch-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc
Q 001763 793 RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET-----QAMP-DD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP 865 (1017)
Q Consensus 793 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p 865 (1017)
+.+..+++.|...|.+.|++++|...+++.++. |..+ +. ..+..++..|...+.+++|..+++...+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 222357888999999999999998888877652 2222 33 3567788889999999999999999877554222
Q ss_pred C------chhHHHHHHhhhccCCHHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhh-
Q 001763 866 R------VDHCACMVDLLGRWGFLKEAEEFIEQLT-------F--EPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIEL- 928 (1017)
Q Consensus 866 ~------~~~~~~l~~~l~~~g~~~eA~~~~~~~~-------~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~- 928 (1017)
. ..+|+.|..+|...|+++||++++++.- . .+. ....+.|...|...+..+.|...|+..+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 2 3578999999999999999999987741 1 222 335667888898888999999999888765
Q ss_pred ---CC---CCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 929 ---EP---ENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 929 ---~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.| +-...|.+|+-+|.++|++++|.++-.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33 4456789999999999999999999887764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-07 Score=97.14 Aligned_cols=603 Identities=13% Similarity=0.104 Sum_probs=340.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccC
Q 001763 226 TSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRG 302 (1017)
Q Consensus 226 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 302 (1017)
..++..| ..+++...+++.+...+ +.+--..|.....-.+...|+-++|......... .+.++|..+.-.+....
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence 3344333 44667777777777766 3333445555555566778888888888887775 45677888888888889
Q ss_pred CchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHh
Q 001763 303 YDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFD 382 (1017)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 382 (1017)
++++|++.|+.... +.||. ...+.-|.-.-++.|+++.....-.
T Consensus 90 ~Y~eaiKcy~nAl~--~~~dN----------------------------------~qilrDlslLQ~QmRd~~~~~~tr~ 133 (700)
T KOG1156|consen 90 KYDEAIKCYRNALK--IEKDN----------------------------------LQILRDLSLLQIQMRDYEGYLETRN 133 (700)
T ss_pred hHHHHHHHHHHHHh--cCCCc----------------------------------HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999998887 55653 2222222222222333333332222
Q ss_pred hc---CCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcC-CCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCch
Q 001763 383 SL---DERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSG-FHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATN 458 (1017)
Q Consensus 383 ~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 458 (1017)
.. .......|..+..++.-.|+...|..+++...+.. -.|+...+.....-..
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly----------------------- 190 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLY----------------------- 190 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-----------------------
Confidence 22 22355678888888888999999999988887654 2455554432221110
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhhcCCC--Cccc-chhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHh
Q 001763 459 LYVGNALVDMYAKSRALEEARKQFERIQNQ--DNVS-WNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSAC 535 (1017)
Q Consensus 459 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 535 (1017)
-.....+.|.++.|.+.+...... |-.. -.+...-+.+.++.++|..+++.++.. .||..-|.-.+..
T Consensus 191 ------~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~- 261 (700)
T KOG1156|consen 191 ------QNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEK- 261 (700)
T ss_pred ------HHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHH-
Confidence 011133455566666655543321 2122 223445677788888888888888774 5665544433332
Q ss_pred hcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHH-HHHhcCCCCCc-hhHHHHHHHHhhCCc--h-HH
Q 001763 536 ANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAH-KVLSCMPQRNV-VSMNALIAGYAQNNV--E-DA 610 (1017)
Q Consensus 536 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~-~~~~~~~~~~~-~~~~~li~~~~~~~~--~-~A 610 (1017)
++.+-.+.-++. .+|....+.-. ...-.-+.-..-+|. . ..
T Consensus 262 ----------------------------------~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 262 ----------------------------------ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred ----------------------------------HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence 222111111222 23322221000 000000011111222 2 44
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC-C
Q 001763 611 VVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF-P 689 (1017)
Q Consensus 611 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 689 (1017)
-..+..+.+.|+++--..+.++-.- |....+.-.++..|...-.-.......+.- .
T Consensus 308 dkyL~~~l~Kg~p~vf~dl~SLyk~-----------------------p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPSVFKDLRSLYKD-----------------------PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHhc-----------------------hhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 4567778888887655555544321 111122223333333211111111111111 1
Q ss_pred CCCCceeehh--hhhhcccCCCchHHHHHHHHHHHCCCCcCHHh-HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch
Q 001763 690 NPKSTVLWTA--VISGHAQNDSNYEALHFYREMRSHNVLPDQAT-FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT 766 (1017)
Q Consensus 690 ~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 766 (1017)
+||.+..|.. ++..|-..|+++.|...++..+.+ .|+.+- |..-.+.+.+.|++++|..+++.+.+.+.. |..+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHH
Confidence 2577777874 677788899999999999999875 676544 445567889999999999999999887764 7766
Q ss_pred HhHHHhHHHhcCCHHHHHHHHHhccCCCh---------hHHHHHH--HHHHHhCCCHHHHHHHHHHHHHC--CCC---CC
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEMAERNY---------VISWNSM--IVGFAKNGYAEDALKVFHEMKET--QAM---PD 830 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~~--g~~---p~ 830 (1017)
-.--+.-..++.+.++|.++.......+. .++|..+ +.+|.+.|++.+|++-|..+-+. .+. -|
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD 521 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD 521 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Confidence 66778888899999999999887765432 2578766 45688888888888766655431 011 12
Q ss_pred h----------HhHHHHHHHcccCCc-------HHHHHHHHHHhhhhcC-C---CcCchhHH-HHHHhhhccC-CHHHHH
Q 001763 831 D----------VTFLGVLTACSHAGR-------VSEGRQIFETMVSCHG-I---QPRVDHCA-CMVDLLGRWG-FLKEAE 887 (1017)
Q Consensus 831 ~----------~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~-~---~p~~~~~~-~l~~~l~~~g-~~~eA~ 887 (1017)
- -+|+-|+..+-..-. -..|+++|-.|-+... . .++.++.+ -.......+. ....|.
T Consensus 522 fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~ 601 (700)
T KOG1156|consen 522 FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAK 601 (700)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHH
Confidence 2 233444443322111 2356777777765220 0 11122222 1111111111 111122
Q ss_pred HHHH--------------hCCCCCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 888 EFIE--------------QLTFEPDSRIWTTLLGACGV-HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 888 ~~~~--------------~~~~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
+.-+ ..+..||... ++..... ..=.++|...+..+....+++...|..-..+|.+.|++.-+
T Consensus 602 ~e~~~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~ 678 (700)
T KOG1156|consen 602 KEAKKKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLA 678 (700)
T ss_pred HHHHHHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHH
Confidence 1111 1123344442 2222222 23356788888888899999999999999999999999999
Q ss_pred HHHHHHHHH
Q 001763 953 NTLRREMRE 961 (1017)
Q Consensus 953 ~~~~~~m~~ 961 (1017)
.+..+....
T Consensus 679 ~~~~~~~~~ 687 (700)
T KOG1156|consen 679 LACLNNAEG 687 (700)
T ss_pred HHHHHhhhh
Confidence 987766554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-09 Score=108.68 Aligned_cols=278 Identities=13% Similarity=0.108 Sum_probs=197.1
Q ss_pred cCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHH
Q 001763 675 SKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIH 752 (1017)
Q Consensus 675 ~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 752 (1017)
.|+|..|++...+-.+ +.....|..-+.+--+.|+.+.|-.++.+..+.--.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777666444 12223333334445567888888888888876422444455566666788889999999999
Q ss_pred HHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh----------HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 001763 753 SLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV----------ISWNSMIVGFAKNGYAEDALKVFHEM 822 (1017)
Q Consensus 753 ~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m 822 (1017)
..+.+.++. ++.+......+|.+.|+|.+...+...+.+.+.. .+|+.++.-....+..+.=...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999998887 7888899999999999999999999998874432 35666666655555555444555554
Q ss_pred HHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-C-CCCCHH
Q 001763 823 KETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-T-FEPDSR 900 (1017)
Q Consensus 823 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~-~~p~~~ 900 (1017)
-.. .+-+...-.+++.-+...|+.++|.++.+...+ ++-.|+.. .++ ...+-|+.+.=++.+++. . .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 432 233334445566667889999999999998887 55556522 222 223444444444444332 1 222447
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
.+.+|+..|.+++.+.+|...++.++...| +...|..++.+|.+.|+..+|.++++...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 899999999999999999999999999998 67789999999999999999999998765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.3e-10 Score=104.63 Aligned_cols=162 Identities=17% Similarity=0.177 Sum_probs=134.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 875 (1017)
....+.-+|.+.|+...|.+-+++.++ ..|+. .++..+...|.+.|..+.|.+.|++.++ +.|+ -+..++...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 455677788888888888888888888 56766 5777888888888888888888888876 5664 467778888
Q ss_pred hhhccCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHH
Q 001763 876 LLGRWGFLKEAEEFIEQLTFEP----DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNE 951 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~ 951 (1017)
-||..|++++|...|++....| -+.+|.+++....+.|+.+.|+..++++++++|+++.+...+++.....|++.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 8888888888888888753333 245888888887789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 001763 952 VNTLRREMREKGV 964 (1017)
Q Consensus 952 a~~~~~~m~~~~~ 964 (1017)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-09 Score=102.29 Aligned_cols=288 Identities=12% Similarity=0.117 Sum_probs=168.6
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHH
Q 001763 501 VQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAA 580 (1017)
Q Consensus 501 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 580 (1017)
.-++++++|+++|-+|.+. .|. ...+.-+|.+.|-+.|..|.|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~-----------------------------------t~e~~ltLGnLfRsRGEvDRA 88 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPE-----------------------------------TFEAHLTLGNLFRSRGEVDRA 88 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--Cch-----------------------------------hhHHHHHHHHHHHhcchHHHH
Confidence 3457889999999999873 221 556667899999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCC
Q 001763 581 HKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 581 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
+++-+.+.+....+++--..+ .-.|..-+...|-++.|..+|..+.+.+ .-
T Consensus 89 IRiHQ~L~~spdlT~~qr~lA---------------------------l~qL~~Dym~aGl~DRAE~~f~~L~de~--ef 139 (389)
T COG2956 89 IRIHQTLLESPDLTFEQRLLA---------------------------LQQLGRDYMAAGLLDRAEDIFNQLVDEG--EF 139 (389)
T ss_pred HHHHHHHhcCCCCchHHHHHH---------------------------HHHHHHHHHHhhhhhHHHHHHHHHhcch--hh
Confidence 998877653211111110000 0111122223333444444444443322 12
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHH----hHHHHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQA----TFVSVL 736 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~----t~~~ll 736 (1017)
-..+...|+.+|-.. .++++|++.-+++...+-.+..+ -|--+.
T Consensus 140 a~~AlqqLl~IYQ~t--------------------------------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 140 AEGALQQLLNIYQAT--------------------------------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred hHHHHHHHHHHHHHh--------------------------------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 233444444444444 45555555555554443333221 133344
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh---HHHHHHHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV---ISWNSMIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~ 813 (1017)
.......+++.|+..+.++...+++ .+.+-..+++++...|+++.|.+.++.+.+.|.. .....+..+|.+.|+.+
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 4555567788888888888877776 7777778888888888888888888888875553 24567778888888888
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHc-ccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhh---hccCCHHHHHHH
Q 001763 814 DALKVFHEMKETQAMPDDVTFLGVLTAC-SHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLL---GRWGFLKEAEEF 889 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l---~~~g~~~eA~~~ 889 (1017)
+.+..+.++.+....++. -..+...- .+.|.-+....+.+++.+ .|+...+..+++.- ..-|+..+...+
T Consensus 267 ~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r----~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 267 EGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR----KPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh----CCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 888888888884333332 22222222 234433333334444433 78887777777653 233445555555
Q ss_pred HHhC
Q 001763 890 IEQL 893 (1017)
Q Consensus 890 ~~~~ 893 (1017)
+++|
T Consensus 341 lr~m 344 (389)
T COG2956 341 LRDM 344 (389)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-07 Score=105.04 Aligned_cols=662 Identities=11% Similarity=0.029 Sum_probs=321.4
Q ss_pred HHHHHHHHHhcCCCC-cchHHHHHHHHHcCCCchhHHHhhhcCCC---CCcchHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 001763 176 RQLHCHVIELGFESS-SFCKGALIDMYAKLNNVSDARRVFDGAVD---LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKV 251 (1017)
Q Consensus 176 ~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 251 (1017)
..++..+....+.++ ...|..|...|+..-+...|.+.|+...+ .|..++......|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333333444444444 35788888888888888899999987666 45667888999999999999999883332221
Q ss_pred C-CCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhhHH
Q 001763 252 G-CVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLG 327 (1017)
Q Consensus 252 g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 327 (1017)
. ...-...|....-.|.+.++...|..-|+...+ .|...|..+..+|...|.+..|.++|.+... ++|+.. |.
T Consensus 556 a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~ 632 (1238)
T KOG1127|consen 556 APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YG 632 (1238)
T ss_pred chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HH
Confidence 1 000112233445567788999999999998876 4667889999999999999999999999887 777643 32
Q ss_pred HHHH--HHhcccchhHHHHHHHHHHHhCC------CCchhhhHHHHHHHHccCChhHHHHHHhhcCC-----------CC
Q 001763 328 SVLS--GISSLAALDFGLIVHAEAIKQGL------YSNVYVASSLINMYAKCEKMESAKKVFDSLDE-----------RN 388 (1017)
Q Consensus 328 ~ll~--~~~~~~~~~~a~~~~~~~~~~g~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~ 388 (1017)
..-. .-+..|.+.++...+..++..-- ..-..++-.+...+.-.|-...|...|+.-.+ .+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~ 712 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSD 712 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 2222 23567777777777776664310 10111111111112222222223333322111 01
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHH
Q 001763 389 AVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDM 468 (1017)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 468 (1017)
...|-.+. .|..+|-+.. .. .|+......+.. +....+..++.. ++..
T Consensus 713 ~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~----------------q~e~~~~l~~~d----~l~L 760 (1238)
T KOG1127|consen 713 RLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSK----------------QLEKTGALKKND----LLFL 760 (1238)
T ss_pred HHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHH----------------HHHhcccCcchh----HHHH
Confidence 11121111 2222232222 00 122111111111 111111111111 0000
Q ss_pred hhccCChhHHHHHHhhcCCCCcccchhhhHHhHh----c----CCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccC
Q 001763 469 YAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQ----E----GDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQG 540 (1017)
Q Consensus 469 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 540 (1017)
-.+|+-.. .+ .+ .+..+|..++..|.+ . .+...|+..+.+.++. ..|..-+-..|...+ |.
T Consensus 761 g~~c~~~h--ls---l~--~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVls--g~ 829 (1238)
T KOG1127|consen 761 GYECGIAH--LS---LA--IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLS--GI 829 (1238)
T ss_pred HHHHhhHH--HH---Hh--hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhh--cc
Confidence 00111000 00 00 124556666555443 1 1123455555554432 222222222222221 11
Q ss_pred CCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCCC---CchhHHHHHHHHhhCCch-HHHHHHHH
Q 001763 541 LPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQR---NVVSMNALIAGYAQNNVE-DAVVLYRG 616 (1017)
Q Consensus 541 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~-~A~~l~~~ 616 (1017)
..-+...|+.+...-..|....+|..+.-.+.+..+++.|...|.....- |.+.|-.+..---..|.. +++.+|..
T Consensus 830 gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 830 GNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 12222223333332233334444444554555555555555555444321 222222111111111111 22222111
Q ss_pred HHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCc
Q 001763 617 MQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVK--KGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKST 694 (1017)
Q Consensus 617 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 694 (1017)
-- ... .|- -+....+.+-.......|+.++-+..-+.++.
T Consensus 910 s~---------------------------------el~~~~gk-a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s---- 951 (1238)
T KOG1127|consen 910 SD---------------------------------ELCSKEGK-AKKFQYWLCATEIHLQNGNIEESINTARKISS---- 951 (1238)
T ss_pred hH---------------------------------Hhhccccc-cchhhHHHHHHHHHHhccchHHHHHHhhhhhh----
Confidence 00 000 010 12233333333344444444433333322221
Q ss_pred eeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHH---HhCC--CCCcchHhH
Q 001763 695 VLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIF---HTGY--DLDEITGSA 769 (1017)
Q Consensus 695 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~--~~~~~~~~~ 769 (1017)
|--.+++... +.+.+..+|........+.+.++.+.....+.+ +..+ ..+...-..
T Consensus 952 ------------------As~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 952 ------------------ASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred ------------------hHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 1122223322 224446778888888888888887777766543 2222 112223334
Q ss_pred HHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChHh-HHHHHHHcccCCcH
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ-AMPDDVT-FLGVLTACSHAGRV 847 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~-~~~l~~~~~~~g~~ 847 (1017)
.+..++..|.++.|...+......-...+-..-+.. .-.|+++++++.|++++... -.-|.+. ...++-+-..++.-
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 667788889999888877655432111111111222 44689999999999998831 1122222 33344445677777
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHHHHHHhh---hccCCHHHHHHHHHhCCCCCCHHHHHH--HH-HHHHhcCCchHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCACMVDLL---GRWGFLKEAEEFIEQLTFEPDSRIWTT--LL-GACGVHRDDIRGRLA 921 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l---~~~g~~~eA~~~~~~~~~~p~~~~~~~--ll-~~~~~~g~~~~a~~~ 921 (1017)
+.|....-..... .+|+....-++..++ ..+-...-+++-+.+.+...+. .|.. +. ..+..+|+-......
T Consensus 1092 ~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~vk~~ 1168 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWF-CWPPGLLKELIYALQGRSVAVKKQ 1168 (1238)
T ss_pred hHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHHHHH
Confidence 8888877776652 355655554443332 2222222333333333211000 1111 12 235677888899999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHH
Q 001763 922 AKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 922 ~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
.++++-.+|.++..+..|..-|+
T Consensus 1169 ~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1169 IQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999999999999985444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-11 Score=87.67 Aligned_cols=50 Identities=36% Similarity=0.595 Sum_probs=48.6
Q ss_pred CCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc
Q 001763 220 LDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFN 269 (1017)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 269 (1017)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-09 Score=109.39 Aligned_cols=195 Identities=16% Similarity=0.149 Sum_probs=111.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN 809 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 809 (1017)
+..+...+...|++++|...++.+++..+. +...+..++..|...|++++|.+.+++... ++....|..++..+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 344444555555555555555555554433 445555566666666666666666665543 22222555666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHH
Q 001763 810 GYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 810 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
|++++|++.+++.++....|.. ..+..+..++...|++++|...|++..+ ..| +...+..+..++...|++++|.
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666653222222 3445555666666677777766666655 223 2345556666666677777776
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 888 EFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 888 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
+.+++. ...| +...+..+...+...|+.+.|....+.+.+..|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 666654 2222 344555555666667777777777666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-08 Score=103.09 Aligned_cols=275 Identities=13% Similarity=0.128 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhC
Q 001763 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEF 688 (1017)
Q Consensus 609 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 688 (1017)
+|.++..+-.+.+-.| ...|..-..+-...|+.+.+-.++..+.+..-. +...+...........|+++.|+.-.++.
T Consensus 102 qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~~~v~~l 179 (400)
T COG3071 102 QAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAARENVDQL 179 (400)
T ss_pred HHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4444444433333222 234455556666778888888887777776322 67778888888999999999999888876
Q ss_pred CC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCH-------HhHHHHHHHHhccCcHHHHHHHHHHHHHhC
Q 001763 689 PN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ-------ATFVSVLRACAVLSSLRDGGEIHSLIFHTG 759 (1017)
Q Consensus 689 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 759 (1017)
.+ |.++........+|.+.|++.+...++.+|.+.|.--|+ .+|..+++-+...+..+.-+..++..-+.
T Consensus 180 l~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~- 258 (400)
T COG3071 180 LEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK- 258 (400)
T ss_pred HHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence 65 677788888899999999999999999999998865553 46777777777777766655555544322
Q ss_pred CCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHH
Q 001763 760 YDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVL 838 (1017)
Q Consensus 760 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~ 838 (1017)
...++....+++.-+.+||+.++|.++..+..++...... .....+.+-++.+.=++..++-.+. .|+. ..+..|+
T Consensus 259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG 335 (400)
T COG3071 259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-CRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLG 335 (400)
T ss_pred hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH-HHHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHH
Confidence 2235677778888888888888888888777664433221 2223345556666666666666552 3433 5567777
Q ss_pred HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 839 TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
..|.+.+.|.+|.+.|+..++ ..|+.++|.-+.++|.+.|+..+|.+..++
T Consensus 336 ~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 336 RLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 788888888888888887766 678888888888888888888888777655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-08 Score=96.82 Aligned_cols=261 Identities=10% Similarity=-0.033 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHH-HH--HhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALI-AG--YAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li-~~--~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
+.....++.+.|...|+.++|...|++...-|+.+...|= -+ +.+.|.. +--.+-..+.... +-...-|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 8889999999999999999999999988765555544442 11 2233433 3333333333221 0111111111222
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEA 713 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 713 (1017)
.-...+++.|..+-++.++.+ |.+...+..-+.++...|+.++|.-.|+.... |-+...|..|+.+|...|++.||
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 233455666666666666555 45555555556666666666666666655433 44555555566666666666555
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHH-HHHh-ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhcc
Q 001763 714 LHFYREMRSHNVLPDQATFVSVL-RACA-VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 714 ~~~~~~m~~~~~~pd~~t~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 791 (1017)
.-+-+..... +..+..++.-+. ..|. ....-|+|+.+++..++..
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-------------------------------- 434 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-------------------------------- 434 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--------------------------------
Confidence 5444433221 111222222111 1111 1112334444444443333
Q ss_pred CCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 792 ERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 792 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
|+.....+.+...+...|++++++.++++.+. ..||....+.|...+...+.+++|...|...+.
T Consensus 435 -P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 435 -PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred -CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33333444555555555555555555555555 345555555555555555555555555555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.2e-07 Score=106.33 Aligned_cols=554 Identities=12% Similarity=0.028 Sum_probs=303.4
Q ss_pred hhhhHHHHHHHHccCChhHHHHHHhhcCC---CCcchHHHHHHHHHhCCChhHHHHHHHhhhhcC-CCCChhcHHHHHHh
Q 001763 358 VYVASSLINMYAKCEKMESAKKVFDSLDE---RNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSG-FHADDFTYTSILSS 433 (1017)
Q Consensus 358 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a 433 (1017)
...|..|.+.|+..-++..|.+.|+..-+ .+..++-.....|+....+++|..+.-.--+.. ...-..-+...--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45788888999888899999999998765 367789999999999999999999843322210 00011111122223
Q ss_pred hhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchh-h--hHHhHhcCCHHHHH
Q 001763 434 CACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNA-I--IVGYVQEGDVFEAF 510 (1017)
Q Consensus 434 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~-l--i~~~~~~g~~~~A~ 510 (1017)
+-+.++...+..-++...+.. +.|...|..+..+|..+|.+..|.++|.+...-++.+|-. . ...-+..|.+.+|+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 445566666666666655543 2366677888888888888888888888776544443322 1 12345577888888
Q ss_pred HHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC--
Q 001763 511 NMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP-- 588 (1017)
Q Consensus 511 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~-- 588 (1017)
..+....... .+..+ +... -..++-.+...+.-.|-...|..+|++-.
T Consensus 651 d~l~~ii~~~--s~e~~-----------~q~g-----------------LaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 651 DALGLIIYAF--SLERT-----------GQNG-----------------LAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHHHHHHHHH--HHHHH-----------hhhh-----------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7777655321 00000 0000 11111122222222233333333333221
Q ss_pred ---------CCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhccCCCcc---c---hhhHHHHHHH
Q 001763 589 ---------QRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKF---H---LGTQIHCLIV 653 (1017)
Q Consensus 589 ---------~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~ 653 (1017)
..+...|-.+-.+ ..+|.... -. .|+......+..-....+.. + .|.+.+-.-+
T Consensus 701 f~~~l~h~~~~~~~~Wi~asda---------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDA---------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHH---------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 1223333333222 22222222 00 11111111111111111111 1 1111111111
Q ss_pred HhCCCCCchHHHHHHHHHHHh----cC----ChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHC
Q 001763 654 KKGLLFDDDFLHIALLSMYMN----SK----RNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSH 723 (1017)
Q Consensus 654 ~~~~~p~~~~~~~~l~~~~~~----~g----~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 723 (1017)
+. . .++..+..|+.-|.+ +| +...|+..++.... ..+...||.|+.. ..-|++.-|...|-+-...
T Consensus 770 sl--~-~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 770 SL--A-IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HH--h-hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 11 1 222333333333322 11 22345666655433 3667788877766 5556777777777666654
Q ss_pred CCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhc-----cC---CCh
Q 001763 724 NVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEM-----AE---RNY 795 (1017)
Q Consensus 724 ~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~-----~~---~~~ 795 (1017)
. +....+|..+.-.|....+++.|...+.......|. +...|....-.....|+.-++..+|..- .. ++.
T Consensus 846 e-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f 923 (1238)
T KOG1127|consen 846 E-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKF 923 (1238)
T ss_pred c-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchh
Confidence 2 345667777777788888888888888888777765 6666666666666778888888877642 11 333
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 796 VISWNSMIVGFAKNGYAEDALKVFHEMKET--------QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 796 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
. -|..-.......|++++-+..-+++-.. +-.|+. ..|...+....+.+.+.+|.+...+.+.-...+-+
T Consensus 924 ~-Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d 1002 (1238)
T KOG1127|consen 924 Q-YWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLD 1002 (1238)
T ss_pred h-HHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 5555555556666666654433332211 124555 67777777778888888888877776542222333
Q ss_pred chhHH----HHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc---hHHHH
Q 001763 867 VDHCA----CMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS---PYVQL 939 (1017)
Q Consensus 867 ~~~~~----~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~---~~~~l 939 (1017)
...|+ ....+++..|.++.|.......+.+-|..+..+-++. ...|+++.+...|++++.+--++.. ....+
T Consensus 1003 ~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kv 1081 (1238)
T KOG1127|consen 1003 ESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKV 1081 (1238)
T ss_pred hhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 33444 3345566777788777666665555555555554444 3457888888888888877554443 33444
Q ss_pred HHHHHhcCCcHHHHHHHHHHHH
Q 001763 940 SNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
++.....+..+.|....-+...
T Consensus 1082 a~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1082 AVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHhhcccchHHHHHHHHHHH
Confidence 4555566666777665554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-07 Score=92.44 Aligned_cols=319 Identities=13% Similarity=0.059 Sum_probs=222.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHH---HHhhCCch-HHHHHHHHHHHcCCCCChHHHHHHHHh
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIA---GYAQNNVE-DAVVLYRGMQTEGLSPNDITFTSLLDA 635 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a 635 (1017)
++.-.--|...+...|++.+|..-|....+.|+..|-++.. .|..-|.. -|+.-|.+.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---------------- 100 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---------------- 100 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----------------
Confidence 44444456666677788888888777777666666655542 24444444 34444444333
Q ss_pred ccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHH
Q 001763 636 CDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALH 715 (1017)
Q Consensus 636 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 715 (1017)
.. |+-..+...-+.++.+.|+++.|..-|+.+.. .++ .+|...+|.+
T Consensus 101 -------------------lK--pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~-~~~-----------s~~~~~eaqs 147 (504)
T KOG0624|consen 101 -------------------LK--PDFMAARIQRGVVLLKQGELEQAEADFDQVLQ-HEP-----------SNGLVLEAQS 147 (504)
T ss_pred -------------------cC--ccHHHHHHHhchhhhhcccHHHHHHHHHHHHh-cCC-----------CcchhHHHHH
Confidence 32 44455555666778899999999998888775 111 1122223322
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--C
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--R 793 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~ 793 (1017)
-+.... ........+......|+...++.....+++..+- |...+..-.++|...|+...|+.-++...+ .
T Consensus 148 kl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~ 220 (504)
T KOG0624|consen 148 KLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ 220 (504)
T ss_pred HHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Confidence 111111 1123445566677889999999999999988876 888999999999999999999988776654 3
Q ss_pred ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHH----------H--HHHcccCCcHHHHHHHHHHhhhh
Q 001763 794 NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLG----------V--LTACSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 794 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~----------l--~~~~~~~g~~~~a~~~~~~m~~~ 860 (1017)
|.......+...+..-|+.+.++.-.++.++ ++||.. +|.. | +......+.|.++++..+++.+
T Consensus 221 DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk- 297 (504)
T KOG0624|consen 221 DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK- 297 (504)
T ss_pred cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 3333778888888999999999999999999 789873 3321 1 1124567888888888888876
Q ss_pred cCCCcC-----chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 861 HGIQPR-----VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 861 ~~~~p~-----~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
..|. ...+..+..++...|++.||+....++ .+.|| ..++..-..++.....++.|+.-|+++.+.+|+|.
T Consensus 298 --~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 298 --NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred --cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 3444 233455667788899999999888775 57776 55888888888888899999999999999999887
Q ss_pred chHHHH
Q 001763 934 SPYVQL 939 (1017)
Q Consensus 934 ~~~~~l 939 (1017)
.+-..+
T Consensus 376 ~~reGl 381 (504)
T KOG0624|consen 376 RAREGL 381 (504)
T ss_pred HHHHHH
Confidence 765544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.5e-07 Score=88.48 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=97.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC---CCccchHHHHHHHhccCCchH
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN---PNVVAWNVMISGHAKRGYDAE 306 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 306 (1017)
.-+....++..|+.+++--...+-+-...+-.-+..++.+.|++++|...+..+.+ ++...+-.|..++.-.|.+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 34555677777777776655444333333344455667777888888777776553 555666667777777777777
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCC
Q 001763 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDE 386 (1017)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 386 (1017)
|..+-.+..+ ++-.-..+....-+.++-++-..++..+...- .---+|..+..-.-.+.+|++++.++..
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776554321 22222333344445666666666665554321 1112233333333456677777776654
Q ss_pred C--CcchHHH-HHHHHHhCCChhHHHHHHHhhhh
Q 001763 387 R--NAVLWNA-LLGGYSQNCYAHEVVDLFFAMKS 417 (1017)
Q Consensus 387 ~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~ 417 (1017)
. +-...|. |.-+|.+...++-+.+++.-..+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 3 2333333 23345555556655555555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=110.62 Aligned_cols=217 Identities=13% Similarity=0.113 Sum_probs=166.4
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+.|++.+|.-.|+..++.+|. +...|--|+......++=..|+..+.+..+ |+......+|+..|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4566677777777777777766 777777777777777777777777777665 3333366677777777777777887
Q ss_pred HHHHHHHCCCCCChHhHHHHH-----------HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHH
Q 001763 818 VFHEMKETQAMPDDVTFLGVL-----------TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA 886 (1017)
++++=+.. .|.- ..+. ....+........++|-.+....+.+++++.+.+|..+|--.|.+++|
T Consensus 375 ~L~~Wi~~--~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRN--KPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHh--Cccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77776552 2211 1111 122333445566777877777677778999999999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 887 EEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 887 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.+.|+.. ..+| |..+|+-|+.........++|+.+|.+++++.|...-+.++||-.|...|.|.||.+.+-.....
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999985 6788 56699999999988889999999999999999999999999999999999999999987666554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.6e-09 Score=101.62 Aligned_cols=226 Identities=10% Similarity=0.038 Sum_probs=189.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH-HHHHHH
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFV-SVLRAC 739 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~-~ll~~~ 739 (1017)
-.-...++..|.+.|...+|.+.|+.... .+-+.+|-.|-..|.+-.++..|+.+|.+-++. .|-.+|+. ...+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 33445788999999999999999987655 566788889999999999999999999998874 67777765 456788
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHHhCCCHHHHH
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAER---NYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
...++.++|.++++.+.+..+. +++...++...|.-.|+.+-|...+.++..- +.. .|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-Lf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-LFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-HHhhHHHHHHhhcchhhhH
Confidence 8999999999999999998876 8888889999999999999999999988763 444 7889999999999999999
Q ss_pred HHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.-|++.+..--+|+. ..|.+|.......|+..-|.+.|+..+. ....+.+.++++..+-.|.|++++|..+++..
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999986656765 4677888888899999999999998876 23345677888888888888888888888765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.7e-07 Score=95.20 Aligned_cols=440 Identities=13% Similarity=0.035 Sum_probs=251.0
Q ss_pred hcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCC---CCcccchhhhHHhHhcCCHHHHHH
Q 001763 435 ACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQN---QDNVSWNAIIVGYVQEGDVFEAFN 511 (1017)
Q Consensus 435 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 511 (1017)
...+++..+..+.+.+++ ++.-...+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 345667777777777666 3222333332222234566888888887776655 356789999888888899999999
Q ss_pred HHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--
Q 001763 512 MFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ-- 589 (1017)
Q Consensus 512 ~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-- 589 (1017)
.|+.... +.|| |..++.-|.-.-...|+++-....-....+
T Consensus 97 cy~nAl~--~~~d-----------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 97 CYRNALK--IEKD-----------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHh--cCCC-----------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999876 4555 555555555555555655554444333332
Q ss_pred -CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcC-CCCChHHHHHHHHh------ccCCCccchhhHHHHHHHHhCCCCC
Q 001763 590 -RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEG-LSPNDITFTSLLDA------CDGPYKFHLGTQIHCLIVKKGLLFD 660 (1017)
Q Consensus 590 -~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g-~~p~~~t~~~ll~a------~~~~~~~~~a~~~~~~~~~~~~~p~ 660 (1017)
.....|..+..++--.|.. .|..+.++..+.. -.|+...+.....- ....|.++.+.+.+......- . +
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~-D 217 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-V-D 217 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-H-H
Confidence 3445777777776666666 7777777776654 24555544432221 234455555555444333222 1 3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeeh-hhhhhcccCCCchHHH-HHHHHHHHCCCCcCHHhHH-HHH
Q 001763 661 DDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWT-AVISGHAQNDSNYEAL-HFYREMRSHNVLPDQATFV-SVL 736 (1017)
Q Consensus 661 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~~~~~pd~~t~~-~ll 736 (1017)
.......-++.+.+.+++++|..++..... .||...|+ .+..++.+-.+..+++ .+|....+. .|...... .-+
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlpl 295 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPL 295 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccH
Confidence 444455667788888888888888887665 23333343 3333333333344444 555555442 22211111 111
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHH----HHHHHHhcc-------------CCChhHHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKR----SAQVFDEMA-------------ERNYVISW 799 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~----A~~~~~~~~-------------~~~~~~~~ 799 (1017)
+......-.+..-.++...++.|++ .+...+...|-.-.+.+- +..+...+. ++.....|
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllW 372 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLW 372 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHH
Confidence 1112222222233344455555554 233344444432111110 111111111 12222345
Q ss_pred H--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 800 N--SMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 800 ~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
. -++..+-..|+++.|+...+..++ -.|.. .-|..-...+.|+|+.++|..+++...+. -.||...-+.-+.-
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKY 448 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHH
Confidence 4 577888899999999999999888 47776 46777788999999999999999998772 23343333344555
Q ss_pred hhccCCHHHHHHHHHhCCCCC-CH--------HHHHHHH--HHHHhcCCchHHHHHHH
Q 001763 877 LGRWGFLKEAEEFIEQLTFEP-DS--------RIWTTLL--GACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p-~~--------~~~~~ll--~~~~~~g~~~~a~~~~~ 923 (1017)
..|+++.++|.+......-+- +. -.|..+- .++.++|++-.|..-+.
T Consensus 449 mLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 449 MLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 679999999999887653221 11 1355443 34666666655544433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.6e-08 Score=90.48 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=145.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN 809 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~ 809 (1017)
...+.-.|...|+...|+.-++++++.++. +..++..+...|.+.|+.+.|.+.|++..+ |+.-...|....-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 344555677778888888888888877776 677888888888888888888888887665 33334678888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHH
Q 001763 810 GYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 810 g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
|++++|...|++.+....-|.. .||.++.-+-.++|+.+.|.+.|++.++ ..|+ +.....|.......|++-+|.
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHH
Confidence 8888888888888885433333 5777777777788888888888888877 4454 456677888888888888888
Q ss_pred HHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 888 EFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 888 ~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
-+++... ..++.....-.+..-...||.+.+-+.-.++-.+.|...+
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8887753 3344443333344566778888888877777788886543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=109.75 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=126.2
Q ss_pred HHHHHHHHhccCCCccchhhHHHHHHHHh-----CCCCCch-HHHHHHHHHHHhcCChHHHHHHHhhCCC----------
Q 001763 627 ITFTSLLDACDGPYKFHLGTQIHCLIVKK-----GLLFDDD-FLHIALLSMYMNSKRNTDARLLFTEFPN---------- 690 (1017)
Q Consensus 627 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 690 (1017)
.|+..+...|...|+++.|...++.+++. |..-+.. .....++.+|...+++.+|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666677777777777777776654 2111222 2222366777777777777777765442
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHC-----CC-CcCHH-hHHHHHHHHhccCcHHHHHHHHHHHHHh---CC
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSH-----NV-LPDQA-TFVSVLRACAVLSSLRDGGEIHSLIFHT---GY 760 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~ 760 (1017)
|.-..+++.|...|...|++++|..++++..+- |. .|+.. .+..+...|...+.+++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 122345566666677777777666666554321 11 12222 2444555666667777776666544321 11
Q ss_pred CCC----cchHhHHHhHHHhcCCHHHHHHHHHhccCC----------ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-
Q 001763 761 DLD----EITGSALIDMYAKCGDVKRSAQVFDEMAER----------NYVISWNSMIVGFAKNGYAEDALKVFHEMKET- 825 (1017)
Q Consensus 761 ~~~----~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 825 (1017)
.++ ..+++.|+..|.+.|++++|.++++++... +...+.+.|...|.+.+++++|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 245566666666666666666666654321 11124455666666666666666666554321
Q ss_pred ---CC-CCCh-HhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 826 ---QA-MPDD-VTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 826 ---g~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|. .|+. .+|.+|+.+|...|++++|.++-+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 2233 355566666666666666666555554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.8e-06 Score=89.66 Aligned_cols=268 Identities=14% Similarity=0.131 Sum_probs=153.1
Q ss_pred CCcchHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHH
Q 001763 220 LDTVSWTSMIA--GYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISG 297 (1017)
Q Consensus 220 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 297 (1017)
-|..|-.+|+. -|...|+.+.|.+-.+-.+ +...|..+.++|.+..+++-|.-.+-.|..
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~------------ 785 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKN------------ 785 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhh------------
Confidence 45566666663 4666777777777665543 334677777777777777777655544432
Q ss_pred HhccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHH
Q 001763 298 HAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESA 377 (1017)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 377 (1017)
... .+.+++..+.|- .+=..+.-.....|.+++|+.++++..+.. .|=..|-..|.+++|
T Consensus 786 ------aRg-aRAlR~a~q~~~----e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA 845 (1416)
T KOG3617|consen 786 ------ARG-ARALRRAQQNGE----EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEA 845 (1416)
T ss_pred ------hhh-HHHHHHHHhCCc----chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHH
Confidence 001 122333333221 111222222345677777777777766542 233456677888888
Q ss_pred HHHHhhcCCC-CcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCC
Q 001763 378 KKVFDSLDER-NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLA 456 (1017)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 456 (1017)
.++-+.-..- =..+|..-..-+-..++.+.|++.|++-... -...+. ++.- +...-++..+. .
T Consensus 846 ~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~r-mL~e-----~p~~~e~Yv~~------~ 909 (1416)
T KOG3617|consen 846 FEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFR-MLKE-----YPKQIEQYVRR------K 909 (1416)
T ss_pred HHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHH-HHHh-----ChHHHHHHHHh------c
Confidence 8876542211 1124555556666677888888888764211 111111 1110 11111111111 1
Q ss_pred chhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhh
Q 001763 457 TNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACA 536 (1017)
Q Consensus 457 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 536 (1017)
.|...|.-....+-..|+++.|+.++....+ |-+++...|-.|+.++|-++-++--
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~esg------------------- 965 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEESG------------------- 965 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHhcc-------------------
Confidence 2333444444444567888888888776543 6667777777788888777765432
Q ss_pred cccCCCcchhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC
Q 001763 537 NIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP 588 (1017)
Q Consensus 537 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 588 (1017)
|......|..+|...|++.+|..+|.+..
T Consensus 966 -----------------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 966 -----------------------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----------------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56667778999999999999999998764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-06 Score=89.95 Aligned_cols=432 Identities=13% Similarity=0.099 Sum_probs=241.6
Q ss_pred HHhHhcCCHHHHHHHHHHhhccCCCCCc-ccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCchHHHHH--HHHHH--H
Q 001763 498 VGYVQEGDVFEAFNMFRRMNLVGIVPDD-VSSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSS--LIDMY--V 572 (1017)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--l~~~y--~ 572 (1017)
.-+.++|++++|+....++...+ ||. ..+.+-+-+....+.++.+..+.. +.+.. .+++. +=.+| -
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~----~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL----LVINSFFFEKAYCEY 90 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh----hhcchhhHHHHHHHH
Confidence 44667788899999888888754 544 345555555566666666653322 22211 11111 23344 3
Q ss_pred HcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCChHH-HHHHHHhccCCCccchhhHHHH
Q 001763 573 KCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPNDIT-FTSLLDACDGPYKFHLGTQIHC 650 (1017)
Q Consensus 573 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 650 (1017)
+.+..|+|...++.....+.-.-..-...+-+.+.. +|+.+|+.+.+.+..--..- -..++.+-... .+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----H
Confidence 678888888888855444432333333344455655 88888888877654433222 22222221110 00 0
Q ss_pred HHHHhCCCC-CchHHHHHHHHHHHhcCChHHHHHHHhhC--------CCCCCc----------eeehhhhhhcccCCCch
Q 001763 651 LIVKKGLLF-DDDFLHIALLSMYMNSKRNTDARLLFTEF--------PNPKST----------VLWTAVISGHAQNDSNY 711 (1017)
Q Consensus 651 ~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~~li~~~~~~g~~~ 711 (1017)
.+......| ++-..+...+-.+...|+|.+|+++++.. .. .+. ..--.|...+...|+.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~-~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLED-EDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcc-cccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111111112 24445555666777888888888888765 11 111 01113455566778888
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHH---HHHHhccCcHHH--HHHHH------------HHHHHhCCCCCcchHhHHHhHH
Q 001763 712 EALHFYREMRSHNVLPDQATFVSV---LRACAVLSSLRD--GGEIH------------SLIFHTGYDLDEITGSALIDMY 774 (1017)
Q Consensus 712 ~A~~~~~~m~~~~~~pd~~t~~~l---l~~~~~~~~~~~--a~~~~------------~~~~~~~~~~~~~~~~~l~~~y 774 (1017)
+|.++|...+..+ .+|....... |.+...-.++-. ....+ ..+.+.... ....-++++.+|
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~-~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ-AIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8888888888765 5554222111 112222222211 11111 111111110 122223444444
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHH-H-HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHH
Q 001763 775 AKCGDVKRSAQVFDEMAERNYVISWNSMIVG-F-AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~-~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a 850 (1017)
. +..+.+.++-.+.+...+......++.. + .+...+.+|.+++.+.-+. .|+. +.....+.....+|+++.|
T Consensus 320 t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred h--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHH
Confidence 3 4556666666666653332133333332 2 2333577888888887764 4655 4555666667889999999
Q ss_pred HHHHH--------HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHH-------HHh-CCCCCC-HHHHHHHHHHHHhcC
Q 001763 851 RQIFE--------TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEF-------IEQ-LTFEPD-SRIWTTLLGACGVHR 913 (1017)
Q Consensus 851 ~~~~~--------~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~-------~~~-~~~~p~-~~~~~~ll~~~~~~g 913 (1017)
++++. ...+ +.-.+...+.++.++.+.+..+-|..+ +.. +...+. ..+|.-+...-.++|
T Consensus 396 ~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 99999 4433 333455667788888877765545444 433 222332 224444555555789
Q ss_pred CchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 914 DDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
+.++|...++.+++.+|++....+.|--.|+... .++|+.+-+
T Consensus 473 ~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 9999999999999999999999999998888764 466666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-06 Score=92.60 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=93.4
Q ss_pred CchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHH--------HHHHhCCCCCcchHhHHHhHHHhcC
Q 001763 709 SNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHS--------LIFHTGYDLDEITGSALIDMYAKCG 778 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~y~~~g 778 (1017)
.+.+|.+++...-+. .|+. +.....+......|+++.|.+++. .+.+.+. .+.+-.+++.+|.+.+
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIK 431 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhcc
Confidence 456666666666553 3443 333344455677888888888887 4444443 4566777888888888
Q ss_pred CHHHHHHHHHhccC---------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHH
Q 001763 779 DVKRSAQVFDEMAE---------RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 779 ~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~ 848 (1017)
+-+.|..++++... ....+.|-..+..-.++|+.++|..+++++.+. .| |..+...+..+|+.. +++
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~e 508 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPE 508 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHH
Confidence 88777777776543 111234556666667889999999999999993 44 557888888888765 466
Q ss_pred HHHHHHH
Q 001763 849 EGRQIFE 855 (1017)
Q Consensus 849 ~a~~~~~ 855 (1017)
.|..+=.
T Consensus 509 ka~~l~k 515 (652)
T KOG2376|consen 509 KAESLSK 515 (652)
T ss_pred HHHHHhh
Confidence 6665533
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-07 Score=89.63 Aligned_cols=299 Identities=11% Similarity=0.052 Sum_probs=217.6
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHH-HH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFV-SV 735 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~-~l 735 (1017)
|.+..-..-++.-+...|++.+|...|....+ |.+-.++..-...|...|+..-|+.-+.+.++ .+||...-. .-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHh
Confidence 45666667778888889999999999988776 33444444456778888999999988888887 488864322 12
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCC--cchHh------------HHHhHHHhcCCHHHHHHHHHhccCCC--hhHHH
Q 001763 736 LRACAVLSSLRDGGEIHSLIFHTGYDLD--EITGS------------ALIDMYAKCGDVKRSAQVFDEMAERN--YVISW 799 (1017)
Q Consensus 736 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~------------~l~~~y~~~g~~~~A~~~~~~~~~~~--~~~~~ 799 (1017)
...+.+.|.+++|..-|+.+++..+... ..++. ..+..+.-.|+...|+..+..+.+-. ....+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 3456789999999999999988776421 12222 23344556789999999999887632 22256
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch----hHHHH-
Q 001763 800 NSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD----HCACM- 873 (1017)
Q Consensus 800 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l- 873 (1017)
..-..+|...|....|+.-++..-+. ..|. .++.-+...+...|+.+.++...+..++ +.|+-. +|-.+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHH
Confidence 66788999999999999888887773 3443 5666667778889999999888887766 666632 23222
Q ss_pred --H------HhhhccCCHHHHHHHHHh-CCCCCCHH--HHHH---HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHH
Q 001763 874 --V------DLLGRWGFLKEAEEFIEQ-LTFEPDSR--IWTT---LLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 874 --~------~~l~~~g~~~eA~~~~~~-~~~~p~~~--~~~~---ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l 939 (1017)
+ ....+.+++-++.+.-++ |..+|... .++. +-..++..|++-+|+.....+++.+|+|..++.--
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 2 224567777777777766 35666522 3333 23344567899999999999999999999999999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 940 SNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 940 ~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
+..|.....|++|+.-+++..+.+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999988887543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-05 Score=87.69 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=82.9
Q ss_pred HHHhcCCchhHHHHhcccCCCCchhHHHHHHHHHcCCChhhHHHHHHHHHhC-CC--------CCChhhHHHHHHHhhcC
Q 001763 99 LYAKCGIANLAEKVFDRLEDRDILAWNSILSMYSKRGSFENVFKSFGLLCNR-GG--------VPNGFTFAIVLSACSKS 169 (1017)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~--------~p~~~t~~~ll~~~~~~ 169 (1017)
.|.--|+.+.|-+....+. +-..|..|.+.+.+..+.+-|.-.+..|... |. .|+ .+=.-+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 4455677777766555553 3356888888888888777776666555321 11 122 1111111123456
Q ss_pred CChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCC-cchHHHHHHHHHHcCChhHHHHHHHHH
Q 001763 170 MDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLD-TVSWTSMIAGYVQAGLPEAAFELFEKM 248 (1017)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 248 (1017)
|.+++|..+|.+-.+.. -|-..|-..|.+++|.++-+.-.+.. ..||..-..-+-..++.+.|++.|++.
T Consensus 814 gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 78888888888777743 34456667788888887765433321 225555566666677788888877763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.1e-07 Score=100.43 Aligned_cols=302 Identities=10% Similarity=-0.039 Sum_probs=181.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCcee---ehhhhhhcccCCCchHHHHHHHHHHHCCCCcCH-HhH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVL---WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ-ATF 732 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~-~t~ 732 (1017)
|+....+..++..+...|+.++|.+.+..... +.+... .......+...|++++|.+++++..+. .|+. ..+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHH
Confidence 56667777777777777777776655554332 222222 222234466778888898888888775 3443 333
Q ss_pred HH---HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHH
Q 001763 733 VS---VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFA 807 (1017)
Q Consensus 733 ~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 807 (1017)
.. ........+..+.+.+......... .........++..+..+|++++|...+++... |+....+..+...|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 81 KLHLGAFGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred HHhHHHHHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 31 1111122344444444443311111 11233444566788889999999999988775 333336778888888
Q ss_pred hCCCHHHHHHHHHHHHHCCC-CCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-H--HHHHhhhccC
Q 001763 808 KNGYAEDALKVFHEMKETQA-MPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC-A--CMVDLLGRWG 881 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~l~~~l~~~g 881 (1017)
..|++++|+..+++.+.... .|+. ..+..+...+...|++++|+.+|++........+..... + .+...+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999998887421 1222 235567788889999999999999876421111111111 1 2233334444
Q ss_pred CHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC---------CCCchHHHHHHHHHh
Q 001763 882 FLKEAEEF---IEQL-TFEPD---SRIWTTLLGACGVHRDDIRGRLAAKKLIELEP---------ENPSPYVQLSNIYAA 945 (1017)
Q Consensus 882 ~~~eA~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p---------~~~~~~~~l~~~y~~ 945 (1017)
..+.+.++ .... +..|+ .........++...|+.+.|....+.+....- .........+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333333 2211 11111 11222444556678888888888877755321 246677889999999
Q ss_pred cCCcHHHHHHHHHHHHcC
Q 001763 946 LGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 946 ~g~~~~a~~~~~~m~~~~ 963 (1017)
.|++++|.+......+.+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999988777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-07 Score=101.02 Aligned_cols=285 Identities=12% Similarity=0.053 Sum_probs=148.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-CCCce-eehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh-----
Q 001763 668 LLSMYMNSKRNTDARLLFTEFPN-PKSTV-LWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA----- 740 (1017)
Q Consensus 668 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~----- 740 (1017)
...++...|++++|.+.+++... -.|.. ........+.+.|+.++|..+|+.+++. .||...|...+..|.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 34555666666777666655433 12222 2334455666667777777777777664 455555554444443
Q ss_pred -ccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHH-HHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHH
Q 001763 741 -VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK-RSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKV 818 (1017)
Q Consensus 741 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 818 (1017)
...+.+.-..+++.+...-+..+..-...| .+..-.++. .+...+..+..++++..+..+-..|....+.+-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 112455555666655544433222111111 111111222 2333444555566664455555555544444444444
Q ss_pred HHHHHHC----C----------CCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccC
Q 001763 819 FHEMKET----Q----------AMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWG 881 (1017)
Q Consensus 819 ~~~m~~~----g----------~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g 881 (1017)
+.+.... + -.|.. .++..+...|.+.|++++|+++.++.++ ..|+ ++-|..-..+|-+.|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCC
Confidence 4444322 0 01222 2344555566677777777777777666 4555 456666667777777
Q ss_pred CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc----------hHHHHHHHHHhcCCc
Q 001763 882 FLKEAEEFIEQLT-FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS----------PYVQLSNIYAALGNW 949 (1017)
Q Consensus 882 ~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~----------~~~~l~~~y~~~g~~ 949 (1017)
++++|.+.++... ..+ |..+-+-....+.+.|+++.|+..+......+- ++. ...-.|..|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7777777776653 333 222222233344566777777666665544332 111 113456677788888
Q ss_pred HHHHHHHHHHH
Q 001763 950 NEVNTLRREMR 960 (1017)
Q Consensus 950 ~~a~~~~~~m~ 960 (1017)
..|++.+..+.
T Consensus 322 ~~ALk~~~~v~ 332 (517)
T PF12569_consen 322 GLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHH
Confidence 88776655444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-07 Score=97.34 Aligned_cols=375 Identities=15% Similarity=0.104 Sum_probs=222.7
Q ss_pred HHHHHHcCCHHHHHHHHhcCCC---CCchhHHHHHHHHhhCCch-HHHHHHHHHHHcCCCCCh-HHHHHHHHhccCCCcc
Q 001763 568 IDMYVKCGFIGAAHKVLSCMPQ---RNVVSMNALIAGYAQNNVE-DAVVLYRGMQTEGLSPND-ITFTSLLDACDGPYKF 642 (1017)
Q Consensus 568 ~~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~-~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~ 642 (1017)
.++....|+++.|...|..... +|-+.|.-=..+|+..|.. +|++=-.+-++ +.|+- -.|.-.-.+....|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3556678999999999987653 4667777778888888877 88876655554 56764 5788888888889999
Q ss_pred chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHh------hCCC-CCC-----ceeehhhhhh-------
Q 001763 643 HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFT------EFPN-PKS-----TVLWTAVISG------- 703 (1017)
Q Consensus 643 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~------~~~~-~~~-----~~~~~~li~~------- 703 (1017)
++|...++.-++.. |.+......|.+++.... ++-+.|. .... |.. ...|..++..
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 99999999888877 788888888888882110 1111111 0000 000 0011111111
Q ss_pred ---cccCCCchHHHHHHHH-----HHHC-------CCCc------------C----------HHhHHHHHHHHhccCcHH
Q 001763 704 ---HAQNDSNYEALHFYRE-----MRSH-------NVLP------------D----------QATFVSVLRACAVLSSLR 746 (1017)
Q Consensus 704 ---~~~~g~~~~A~~~~~~-----m~~~-------~~~p------------d----------~~t~~~ll~~~~~~~~~~ 746 (1017)
|....+...|.-.+.. +... +..| | ..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111110000 0000 0111 0 011334555555556666
Q ss_pred HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh---------HHHHHHHHHHHhCCCHHHHHH
Q 001763 747 DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV---------ISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 747 ~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
.+.+-+...++.. . +..-++....+|...|.+.+.+..-+...+.+.. .+..-+..+|.+.++++.|+.
T Consensus 242 ~a~q~y~~a~el~-~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA-T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh-h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 6666666666655 2 5555556666666666666665555554443322 111223445556667777777
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh-HHHHHHhhhccCCHHHHHHHHHhC-CC
Q 001763 818 VFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH-CACMVDLLGRWGFLKEAEEFIEQL-TF 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~l~~~g~~~eA~~~~~~~-~~ 895 (1017)
.|++.+.....||..+ +....+++....+...- +.|.... --.-...+-+.|++.+|++.+.++ ..
T Consensus 320 ~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 7777666444443221 12233444443333322 3343211 111255567888899998888875 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.| |...|.+...++...|++..|..-+++.++++|++...|..-+.++....+|++|.+.+.+-.+..
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56 555777777777788999999999999999999999999999999999999999988887666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-06 Score=96.61 Aligned_cols=431 Identities=15% Similarity=0.132 Sum_probs=239.7
Q ss_pred HHhhccCChhHHHHHHhhcCC--CCcccc-hhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 467 DMYAKSRALEEARKQFERIQN--QDNVSW-NAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 467 ~~~~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
..+...|++++|.+.++.... .|..+| ......+.+.|+.++|..+|+.+++. .||...|-..+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 345677888888888877543 344443 44556777888888888888888875 5676665555544431111
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCCC--CCchhHHHHHHHHhhCCch---HHHHHHHHHH
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMPQ--RNVVSMNALIAGYAQNNVE---DAVVLYRGMQ 618 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~---~A~~l~~~m~ 618 (1017)
++. ....+.-.++++++.. |.......+.-.+.. |.. .+...+..+.
T Consensus 87 -----------~~~----------------~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 87 -----------QLS----------------DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-GDEFKERLDEYLRPQL 138 (517)
T ss_pred -----------ccc----------------cccHHHHHHHHHHHHHhCccccchhHhhcccCC-HHHHHHHHHHHHHHHH
Confidence 000 0112222333333221 111111111111111 222 4555666777
Q ss_pred HcCCCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeeh
Q 001763 619 TEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWT 698 (1017)
Q Consensus 619 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 698 (1017)
.+|+++--.....+ +..........+++...... +..++.+.... .....+|....|.
T Consensus 139 ~KgvPslF~~lk~L---y~d~~K~~~i~~l~~~~~~~----------------l~~~~~~~~~~---~~~~~~p~~~lw~ 196 (517)
T PF12569_consen 139 RKGVPSLFSNLKPL---YKDPEKAAIIESLVEEYVNS----------------LESNGSFSNGD---DEEKEPPSTLLWT 196 (517)
T ss_pred hcCCchHHHHHHHH---HcChhHHHHHHHHHHHHHHh----------------hcccCCCCCcc---ccccCCchHHHHH
Confidence 77765433333332 22222222222221111110 00011110000 1112245555564
Q ss_pred --hhhhhcccCCCchHHHHHHHHHHHCCCCcC-HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 699 --AVISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 699 --~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
-+...|-..|++++|++++++.+++ .|+ ...|..-...+-+.|++++|....+.+...+.. |..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 4567788899999999999999986 576 455777788999999999999999999999887 8888899999999
Q ss_pred hcCCHHHHHHHHHhccCCCh---------hHHHH--HHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCh-----------
Q 001763 776 KCGDVKRSAQVFDEMAERNY---------VISWN--SMIVGFAKNGYAEDALKVFHEMKET--QAMPDD----------- 831 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~---------~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~----------- 831 (1017)
++|++++|.+++.....++. .+.|. ..+.+|.+.|++..|++.|..+.+. .+.-|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 99999999999988776542 14675 4577899999999999877766542 122222
Q ss_pred --HhHHHHHHHcccCCc-------HHHHHHHHHHhhhhcCCCcCchh---HHHHH-----Hhh------hccCCHHHHHH
Q 001763 832 --VTFLGVLTACSHAGR-------VSEGRQIFETMVSCHGIQPRVDH---CACMV-----DLL------GRWGFLKEAEE 888 (1017)
Q Consensus 832 --~~~~~l~~~~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~---~~~l~-----~~l------~~~g~~~eA~~ 888 (1017)
.+|..++...-+... ...|+++|-.+-+.......... ...+- .+. .+....+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 233334433221111 13445555554331111110000 00000 000 01111111111
Q ss_pred HHHh--------------C-CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 889 FIEQ--------------L-TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 889 ~~~~--------------~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
.-.+ . +...|......-+ .....=+++|.+.++-+++..|++...|..--.+|.+.|++--|+
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 1100 0 1112222221111 112234578999999999999999999999999999999999888
Q ss_pred HHHH
Q 001763 954 TLRR 957 (1017)
Q Consensus 954 ~~~~ 957 (1017)
+..+
T Consensus 512 qaL~ 515 (517)
T PF12569_consen 512 QALK 515 (517)
T ss_pred HHHH
Confidence 7654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-07 Score=95.15 Aligned_cols=200 Identities=9% Similarity=0.016 Sum_probs=147.9
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcC-CHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCH--HHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG-DVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYA--EDAL 816 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~--~~A~ 816 (1017)
.+..++|....+.+++..+. +..+|+....++.+.| ++++|+..++++.. +....+|+.....+.+.|+. ++++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 45667788888888887776 6677777777787877 57889998888775 33223788766666666653 6788
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhcc---CCH----HHHH
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRW---GFL----KEAE 887 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~---g~~----~eA~ 887 (1017)
+.++++++ ..|+. .++.....++.+.|+++++++.++++++ ..| +...|+....++.+. |.+ ++++
T Consensus 129 ~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 129 EFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 88989988 56755 6788888888888999999999999987 333 345565555554443 323 4677
Q ss_pred HHHHh-CCCCC-CHHHHHHHHHHHHhc----CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 888 EFIEQ-LTFEP-DSRIWTTLLGACGVH----RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 888 ~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
++..+ +...| |...|..+.+.+..+ +....+...+.++++.+|+++.++..|+++|+...
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~ 269 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGL 269 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhh
Confidence 77744 45677 556999999998774 34466888899999999999999999999999743
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-06 Score=89.46 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=162.5
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhH-HHHHHHHhccCcHHHHHHHHHHHHHhCCCC------CcchHhHH
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATF-VSVLRACAVLSSLRDGGEIHSLIFHTGYDL------DEITGSAL 770 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 770 (1017)
..++.+..+..+++.|++.+....+.. ...+| +....++...|.+.+....-+..++.|... -......+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 345666667777778888887777643 33443 334446677777766666555555444331 01122235
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE 849 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 849 (1017)
+..|.+.|+++.|+..|.+...+-.. -....+....++++...+...- +.|+. .-...-++.+.+.|++..
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 66888889999999999875542111 1112233455666666665555 45665 233444777889999999
Q ss_pred HHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 850 GRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 850 a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
|+..|.++++. .+-|...|++..-+|.+.|.+.+|++-.+.. ...|+.. .|.--+.++....+++.|..+|.++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999872 2335667999999999999999999877664 4667654 666666777778899999999999999
Q ss_pred hCCCCCchHHHHHHHHHhc
Q 001763 928 LEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 928 ~~p~~~~~~~~l~~~y~~~ 946 (1017)
.+|++..+...+...+...
T Consensus 455 ~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred cCchhHHHHHHHHHHHHHh
Confidence 9999999998888888864
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-07 Score=95.28 Aligned_cols=180 Identities=9% Similarity=0.057 Sum_probs=125.7
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH----h
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV----T 833 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 833 (1017)
....+..++..|.+.|++++|...|+++.. |+. ...|..++.++...|++++|+..++++++ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 456677788888888888888888887765 221 13667788888888888888888888887 345432 4
Q ss_pred HHHHHHHcccC--------CcHHHHHHHHHHhhhhcCCCcCchhH-HHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 001763 834 FLGVLTACSHA--------GRVSEGRQIFETMVSCHGIQPRVDHC-ACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTT 904 (1017)
Q Consensus 834 ~~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ 904 (1017)
+..+..++... |++++|.+.|+.+.+. .|+.... ..+.. .+...... . .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~----~~~~~~~~---~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKR----MDYLRNRL---A--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHH----HHHHHHHH---H--------HHHHH
Confidence 55556666554 7788888888888763 3433211 11110 00111100 0 01234
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+...+...|+.+.|+..++++++..|++ +.++..++.+|...|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566778899999999999999998765 478999999999999999999999887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-07 Score=99.68 Aligned_cols=214 Identities=15% Similarity=0.147 Sum_probs=137.2
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
|++.+|.-.|+.+++.+ |.+.+++..|+......++-..|+..+++..+ |.|..+.-+|...|...|.-.+|+..+
T Consensus 299 G~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 33444444444444444 45555555555555555555555555555443 445555555555555555555555555
Q ss_pred HHHHHCCCCcCHHhHHHH------H--HHHhccCcHHHHHHHHHHH-HHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHH
Q 001763 718 REMRSHNVLPDQATFVSV------L--RACAVLSSLRDGGEIHSLI-FHTGYDLDEITGSALIDMYAKCGDVKRSAQVFD 788 (1017)
Q Consensus 718 ~~m~~~~~~pd~~t~~~l------l--~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~ 788 (1017)
+.-+... |.......- . +.......+....++|-.+ ...+-..|+.++..|+-+|--.|+++.|++.|+
T Consensus 377 ~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 5543321 100000000 0 0111122233344444433 444445789999999999999999999999999
Q ss_pred hccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 789 EMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 789 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
.... |+....||-++..++...+.++|+..|++.++ ++|.-+ ....|+-.|...|.+.||.+.|-.++.
T Consensus 455 ~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 455 AALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 8875 55556999999999999999999999999999 789873 555677889999999999999888765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-07 Score=87.63 Aligned_cols=276 Identities=13% Similarity=0.122 Sum_probs=187.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH-HHHHhccCcHHH
Q 001763 671 MYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV-LRACAVLSSLRD 747 (1017)
Q Consensus 671 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l-l~~~~~~~~~~~ 747 (1017)
.+.+-.++++|++++....+ |++....+.|..+|....++.+|...|+++-.. .|...-|..- ..++.+.+.+..
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHH
Confidence 34566677777777665444 456677777888888888888888888887663 4544333211 233445566667
Q ss_pred HHHHHHHHHHhCCCCCcchHhHHH----hHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 748 GGEIHSLIFHTGYDLDEITGSALI----DMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 748 a~~~~~~~~~~~~~~~~~~~~~l~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
|.++...+.+. ....+..+ -.....|++-.+..+.++.+..+...+.+.......+.|++++|++-|+..+
T Consensus 97 ALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 97 ALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred HHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 77776665432 11222211 2233567888888888888864444366677777788899999999999888
Q ss_pred H-CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc---------------------hhHHHHH-------
Q 001763 824 E-TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV---------------------DHCACMV------- 874 (1017)
Q Consensus 824 ~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---------------------~~~~~l~------- 874 (1017)
+ .|+.|- ..|+ +.-+..+.|+++.|+++...+++ .|++..+ -|-+.++
T Consensus 172 qvsGyqpl-lAYn-iALaHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 172 QVSGYQPL-LAYN-LALAHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred hhcCCCch-hHHH-HHHHHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8 455553 3343 44456778899999998888876 4544221 1223333
Q ss_pred HhhhccCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcH
Q 001763 875 DLLGRWGFLKEAEEFIEQLTF----EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~ 950 (1017)
..+-+.|+++.|.+.+..||. +.|+++..++.- ....++.-.+.+-+.-+++++|--++.+-++.-+|+++.-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 345788999999999999973 457777766542 234567777777788899999988899999999999999999
Q ss_pred HHHHHHH
Q 001763 951 EVNTLRR 957 (1017)
Q Consensus 951 ~a~~~~~ 957 (1017)
-|..+..
T Consensus 328 lAADvLA 334 (459)
T KOG4340|consen 328 LAADVLA 334 (459)
T ss_pred HHHHHHh
Confidence 9988764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.7e-06 Score=91.33 Aligned_cols=270 Identities=12% Similarity=0.023 Sum_probs=177.0
Q ss_pred CCceeehhhhhhcccCCCchHHHHHHHHHHHCCC-CcCHHhHHH-HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHh-
Q 001763 692 KSTVLWTAVISGHAQNDSNYEALHFYREMRSHNV-LPDQATFVS-VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGS- 768 (1017)
Q Consensus 692 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~pd~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~- 768 (1017)
.....|..+...+...|+.+++...+.+..+... .++...... ....+...|++++|...++.+++..+. +...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 4455666777777778888888777777655321 223322222 233457789999999999999988765 444444
Q ss_pred --HHHhHHHhcCCHHHHHHHHHhccCC--ChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHccc
Q 001763 769 --ALIDMYAKCGDVKRSAQVFDEMAER--NYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSH 843 (1017)
Q Consensus 769 --~l~~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 843 (1017)
.+.......|..+.+.+.++..... +....+..+...+...|++++|++.+++.++ ..|+. ..+..+..+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 2222223356667777777653332 2222344566788999999999999999999 45765 567888889999
Q ss_pred CCcHHHHHHHHHHhhhhcCCCcCc--hhHHHHHHhhhccCCHHHHHHHHHhCC-CCC--CHHHHH----HHHHHHHhcCC
Q 001763 844 AGRVSEGRQIFETMVSCHGIQPRV--DHCACMVDLLGRWGFLKEAEEFIEQLT-FEP--DSRIWT----TLLGACGVHRD 914 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p--~~~~~~----~ll~~~~~~g~ 914 (1017)
.|++++|+..+++..+.....|.. ..|..+...+...|++++|.+.+++.. ..| ...... .++.-....|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999988733222332 235578889999999999999999852 233 222211 23344445665
Q ss_pred chHHHHH---HHHHHhhCCC--CCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 915 DIRGRLA---AKKLIELEPE--NPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 915 ~~~a~~~---~~~~l~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.+.+... ......-.|. ....-.+.+..+...|++++|.++.+.++....
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 5544443 2221111122 223334678888999999999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-07 Score=87.48 Aligned_cols=148 Identities=7% Similarity=0.051 Sum_probs=109.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~ 882 (1017)
+..|...|+++......+.+.. |. ..+...++.++++..++..++ .-+.+.+.|..+..+|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 4467777777765444322211 21 023346667777777777766 234456778888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--chHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 883 LKEAEEFIEQL-TFEP-DSRIWTTLLGA-CGVHRD--DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 883 ~~eA~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
+++|.+.+++. ...| +..+|..+..+ +...|+ .++|...++++++.+|+++.++.+||..+...|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888875 4566 55688888876 456676 5999999999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 001763 958 EMREKGV 964 (1017)
Q Consensus 958 ~m~~~~~ 964 (1017)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9887543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=86.19 Aligned_cols=122 Identities=12% Similarity=-0.000 Sum_probs=89.2
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-
Q 001763 816 LKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL- 893 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~- 893 (1017)
..++++.++ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|+..+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666 45664 44556667778888888888888766 444 4556777777778888888888887775
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 894 TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 894 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
...| ++..|..++.++...|+.++|+..+++++++.|+++..+.+++++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3455 55677778888888888888888888888888888888887776644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-05 Score=75.97 Aligned_cols=280 Identities=12% Similarity=0.038 Sum_probs=169.1
Q ss_pred HHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHC-CCCcCHHhHHHHHHHHhccCcHHHHHH
Q 001763 672 YMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSH-NVLPDQATFVSVLRACAVLSSLRDGGE 750 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~pd~~t~~~ll~~~~~~~~~~~a~~ 750 (1017)
....+++..++.+.++.+...+..+.+.......+.|++++|++-|+...+- |+.| ...|+..+ +..+.+++..|..
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk 199 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALK 199 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHH
Confidence 3345677777777777775455666666677777888888888888887764 4444 34454443 4456778888888
Q ss_pred HHHHHHHhCCCCCcc---------------------hHhHH-------HhHHHhcCCHHHHHHHHHhccC-----CChhH
Q 001763 751 IHSLIFHTGYDLDEI---------------------TGSAL-------IDMYAKCGDVKRSAQVFDEMAE-----RNYVI 797 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~---------------------~~~~l-------~~~y~~~g~~~~A~~~~~~~~~-----~~~~~ 797 (1017)
...++++.|+...+. +-+.+ .-.+.+.|+++.|.+.+-.|+- .|++
T Consensus 200 ~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv- 278 (459)
T KOG4340|consen 200 HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV- 278 (459)
T ss_pred HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch-
Confidence 888887766542211 11223 3445678999999999999975 3555
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
+...+.-.- ..|++.+..+-+.-+++. .|- ..||..++-.|++..-++-|..++-.-.. +-..--.+-...+.++
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLda 354 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDA 354 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHH
Confidence 555544332 345666666666666664 553 37999999999999988888877654211 0000001111233444
Q ss_pred h-hccCCHHHHHHHHHhCCCCCCHHHHHHHH-HH-HHhcCCc----hHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 877 L-GRWGFLKEAEEFIEQLTFEPDSRIWTTLL-GA-CGVHRDD----IRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 877 l-~~~g~~~eA~~~~~~~~~~p~~~~~~~ll-~~-~~~~g~~----~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
+ ...-..++|++-++++...--. -...+. .. -.++.+- ..++.-|+..+|+. .......+|+|....++
T Consensus 355 LIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy 430 (459)
T KOG4340|consen 355 LITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDY 430 (459)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccc
Confidence 4 3344577777665543210000 011111 11 1122222 23455566666663 34778889999999999
Q ss_pred HHHHHHHHHHHHc
Q 001763 950 NEVNTLRREMREK 962 (1017)
Q Consensus 950 ~~a~~~~~~m~~~ 962 (1017)
..++++++.-.+-
T Consensus 431 ~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 431 PMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999866553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=94.63 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=175.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA 738 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~ 738 (1017)
|+-......+++.+..+|-..+|..+|++... |...|.+|...|+..+|.++..+..+ -+||..-|..+.+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 46777778899999999999999999988754 88899999999999999999888887 37888889888888
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHH
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
.....-+++|.++.+.... .+...+.....+.++++++.+.|+.-.+ +....+|.....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888788888888776532 2334444555568999999999986655 333458999999999999999999
Q ss_pred HHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 817 KVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.|..... ..||. ..|+++..+|...|+-.+|...++...+ +. .-+...+-+..-+..+-|.+++|++.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999988 68988 6899999999999999999999999887 43 333344445555667899999999998775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-07 Score=84.10 Aligned_cols=108 Identities=14% Similarity=0.077 Sum_probs=93.3
Q ss_pred HHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 852 QIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 852 ~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
.+|++.++ +.|+ ++......+...|++++|.+.++.. ...| +...|..++.+|...|+++.|+..++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45566555 4555 4566788899999999999999986 4666 56689999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 930 PENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 930 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
|+++.+++.+|.+|...|++++|.+.+++..+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998876543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=82.76 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=86.7
Q ss_pred CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 001763 866 RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIY 943 (1017)
Q Consensus 866 ~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y 943 (1017)
+.+....+...+...|++++|+++++-+ ...| +..-|..|+..|+..|+++.|+.+|.+++.++|++|.++.+++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556666777788999999999999886 4667 5568999999999999999999999999999999999999999999
Q ss_pred HhcCCcHHHHHHHHHHHHcC
Q 001763 944 AALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 944 ~~~g~~~~a~~~~~~m~~~~ 963 (1017)
...|+.+.|.+.++...+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.2e-06 Score=92.68 Aligned_cols=223 Identities=17% Similarity=0.180 Sum_probs=174.6
Q ss_pred CCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHH
Q 001763 759 GYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVL 838 (1017)
Q Consensus 759 ~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 838 (1017)
++.|--..-..+.+.+.++|-..+|..+|++.. .|-..+.+|...|+..+|.++..+-++ -+||...|..++
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 344555666789999999999999999999865 788889999999999999999998888 468889999999
Q ss_pred HHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCch
Q 001763 839 TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ-LTFEP-DSRIWTTLLGACGVHRDDI 916 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~ 916 (1017)
...-..--+++|.++++..-.. .-..+.....+.++++++.+.++. +.++| -..+|..++-+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 9988888899999998875441 111222334457899999999876 56676 5568999888888889999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEEEecCCCCC-CChHHH
Q 001763 917 RGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNFFVAGDTSH-PNADRI 995 (1017)
Q Consensus 917 ~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~f~~~d~~~-~~~~~~ 995 (1017)
.|..+|...+.++|++..++++++-.|.+.|+..+|-...++...-+- -+|-.-.| +-.++.|-+| .++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~iWEN--ymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QHWQIWEN--YMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CCCeeeec--hhhhhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999888877665442 13444444 2235566555 456777
Q ss_pred HHHHHHHHH
Q 001763 996 CAVLEDLTA 1004 (1017)
Q Consensus 996 ~~~l~~l~~ 1004 (1017)
|..+.++.+
T Consensus 610 ~~rll~~~~ 618 (777)
T KOG1128|consen 610 YHRLLDLRK 618 (777)
T ss_pred HHHHHHhhh
Confidence 776666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-06 Score=98.30 Aligned_cols=133 Identities=13% Similarity=0.137 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 875 (1017)
.+..++....+.|++++|+.+++...+ +.||. .....++.++.+.+++++|+..+++... ..|+ ..+...+..
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~ 162 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHH
Confidence 455556666666666666666666666 45655 3455555666666666666666666554 3443 345555566
Q ss_pred hhhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 876 LLGRWGFLKEAEEFIEQLT-FEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
++.+.|+++||.++|+++. ..|+ ..+|.+++.++...|+.++|..+|+++++...+-...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 6666666666666666542 3333 3456666666666666666666666666655443333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=89.47 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=120.1
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCC-h--hHHHH-HHHHHH
Q 001763 731 TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERN-Y--VISWN-SMIVGF 806 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~-~--~~~~~-~l~~~~ 806 (1017)
...-+.+++...|.++... ..+... ..|.......+...+...++-+++..-+++..... . ...+. ..+..+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3444555666666655332 222221 23344444444444433345555555554433211 1 11222 222344
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH----HHhhhccCC
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM----VDLLGRWGF 882 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~l~~~g~ 882 (1017)
...|++++|++++++- .+.......+.+|...++++.|.+.++.|.+ +..| .+...+ +.+..-.++
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchh
Confidence 5567777777766542 2233444455666777777777777777765 3333 222222 333322346
Q ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc-HHHHHHHHHH
Q 001763 883 LKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW-NEVNTLRREM 959 (1017)
Q Consensus 883 ~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m 959 (1017)
+.+|.-+|+++. ..+++.+.+.++.++...|++++|+..++++++.+|.++.+..+++-+....|+. +.+.+...++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 778887777763 3456667776777777788888888888888888888888888888888888888 5566677666
Q ss_pred HH
Q 001763 960 RE 961 (1017)
Q Consensus 960 ~~ 961 (1017)
+.
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-06 Score=96.36 Aligned_cols=209 Identities=14% Similarity=0.157 Sum_probs=173.2
Q ss_pred HHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCC-Ch------hHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 751 IHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAER-NY------VISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~-~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
=|++.+...|. ....|...+......+++++|++++++.... +. ...|.++++.....|.-+...+.|+++.
T Consensus 1446 DferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 35555666665 5567777777888889999999999887651 11 1479999999999998888899999999
Q ss_pred HCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC---C
Q 001763 824 ETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP---D 898 (1017)
Q Consensus 824 ~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p---~ 898 (1017)
+ + -|. ..|..|+..|.+.+++++|.++++.|.++++ .....|...++.+.+.++-++|.+++++. ..-| .
T Consensus 1525 q--y-cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1525 Q--Y-CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred H--h-cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8 3 355 5789999999999999999999999999877 66778999999999999999999998764 3333 2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 899 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
.....-.+..-.++||.++|+.+++-++.-.|.....|..+.+.=.+.|+-+.++.+++++.+.++.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 3355556667778999999999999999999999999999999999999999999999999987664
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.4e-06 Score=82.64 Aligned_cols=153 Identities=11% Similarity=0.138 Sum_probs=109.9
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSE 849 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~ 849 (1017)
+-.|...|+++......+.+..+.. .+...++.++++..+++.++ ..|+. ..|..|+..|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3456777777665444433222110 12235667788888888887 45655 677888888888888999
Q ss_pred HHHHHHHhhhhcCCCc-CchhHHHHHHhh-hccCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHH
Q 001763 850 GRQIFETMVSCHGIQP-RVDHCACMVDLL-GRWGF--LKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 850 a~~~~~~m~~~~~~~p-~~~~~~~l~~~l-~~~g~--~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 923 (1017)
|...|++..+ +.| +...+..+..++ .+.|+ .++|.+++++. ...| +...+..++..+...|++++|+..++
T Consensus 92 A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9888888876 555 456677777754 67777 58899888886 4666 55678888888899999999999999
Q ss_pred HHHhhCCCCCchHH
Q 001763 924 KLIELEPENPSPYV 937 (1017)
Q Consensus 924 ~~l~~~p~~~~~~~ 937 (1017)
++++++|.+..-+-
T Consensus 169 ~aL~l~~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHhhCCCCccHHH
Confidence 99999997765543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.4e-06 Score=86.73 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=141.5
Q ss_pred hHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 772 DMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNG-YAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 772 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
.++.+.++.++|+.+.+.+.. |+...+|+.....+...| +.++++..++++++. .|+. .++.....++.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 344556788899999998875 444458888877787888 679999999999994 5665 4566665556666653
Q ss_pred --HHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCc----
Q 001763 848 --SEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVH---RDD---- 915 (1017)
Q Consensus 848 --~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~---- 915 (1017)
++++.+++++++ +.| +...|+....++.+.|++++|+++++++ ...| +..+|+......... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 778999989887 555 4567888888999999999999999987 4555 666899887766543 222
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCCcHHHHHHHHHHHHc
Q 001763 916 IRGRLAAKKLIELEPENPSPYVQLSNIYAA----LGNWNEVNTLRREMREK 962 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~ 962 (1017)
+.+....+++++++|+|..++..++.+|.. .++..+|.+......+.
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 467777789999999999999999999988 34566777777665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.6e-05 Score=93.83 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhcCCCC
Q 001763 564 GSSLIDMYVKCGFIGAAHKVLSCMPQR 590 (1017)
Q Consensus 564 ~~~l~~~y~~~g~~~~A~~~~~~~~~~ 590 (1017)
.......|...|++.+|..........
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~ 370 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA 370 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH
Confidence 344455566777777777766666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-07 Score=60.24 Aligned_cols=33 Identities=48% Similarity=0.826 Sum_probs=24.6
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcC
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQ 284 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 284 (1017)
|+.||..||++||++||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777777777777777777777777777764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=94.23 Aligned_cols=216 Identities=13% Similarity=0.093 Sum_probs=137.5
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHH-HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhH
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSV-LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSA 769 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 769 (1017)
|.+...|-.|+..|...+++++|+.+.+...+. .|+...+... ...+...+++..+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 344555666666666666666666666655543 4554332222 2233344443333322 2
Q ss_pred HHhHHHhcCCHHHHHHHHHhccC-CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAE-RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
+++......++.-...+.+.|.. .+...++..++.+|.+.|+.++|..+++++++ +.|+. ...+.++..|+.. +.
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hH
Confidence 22223333333222222223332 11112667889999999999999999999999 55765 6778888888888 99
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC---------------------HHHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD---------------------SRIWTTL 905 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~---------------------~~~~~~l 905 (1017)
++|.+++.+++.. |...+++.++.++++++ ...|+ ...|.-+
T Consensus 166 ~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 166 EKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 9999999988762 44455666666666654 23332 1123333
Q ss_pred HHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 001763 906 LGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 906 l~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
-.-|....+++++...++.+++.+|.|..+...++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 355667789999999999999999999999999999988
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.6e-06 Score=84.53 Aligned_cols=184 Identities=13% Similarity=-0.012 Sum_probs=129.9
Q ss_pred CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HH
Q 001763 726 LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDL--DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---IS 798 (1017)
Q Consensus 726 ~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~ 798 (1017)
......+..+...+...|++++|...++.++...+.. ...++..++.+|.+.|++++|+..++++.+ |+.. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445678888889999999999999999998877641 124678899999999999999999999875 3222 25
Q ss_pred HHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh
Q 001763 799 WNSMIVGFAKN--------GYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH 869 (1017)
Q Consensus 799 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 869 (1017)
|..+..++... |++++|++.|+++++ ..|+.. ....+..... . ... . ..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~-~--------~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNR-L--------AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHH-H--------HHH
Confidence 66677777665 789999999999998 467753 2221111100 0 000 0 011
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL----TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
...+.+.|.+.|++++|+..+++. +..| ....|..++.++...|+.++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 234667788888888888887764 2233 245788888888888999998888777766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.8e-06 Score=78.82 Aligned_cols=125 Identities=18% Similarity=0.106 Sum_probs=59.2
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL--TFEPDSRIWTTLLGACGVH 912 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~ 912 (1017)
..+.+++...|+-+++..+..+.... ..-+.+.....+....+.|++.+|...+.+. +-++|...|+.++.+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33444444444444444444443221 1112222223444455555555555555443 1233444555555555555
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
|+++.|...|.+++++.|.++.++.+|+..|.-.|+.++|..+......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555555555555544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.004 Score=78.44 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=75.2
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHhCCCCC-cchH-----hHHHhHHHhcCCHHHHHHHHHhccCCChh------HHHHH
Q 001763 734 SVLRACAVLSSLRDGGEIHSLIFHTGYDLD-EITG-----SALIDMYAKCGDVKRSAQVFDEMAERNYV------ISWNS 801 (1017)
Q Consensus 734 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~y~~~g~~~~A~~~~~~~~~~~~~------~~~~~ 801 (1017)
.+.......|+.+.|...+..+........ ...+ ......+...|+.+.|...+.....+... ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 344455667777777777666543311111 0000 11223445578888888887665542211 11345
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC----CCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKET----QAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+..++...|++++|...+++.++. |..++. .+...+..++...|+.++|...+.+..+
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777888888888888877653 222222 3556667778888888888888888876
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=82.61 Aligned_cols=96 Identities=21% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhcc
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRW 880 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~ 880 (1017)
.+-..+.++|++|+..|.+.++ +.|+. +.|..-..+|++.|.++.|++-.++.+. +.|.. ..|..|.-+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3446677889999999999888 67755 6677788888888888888888888776 55542 3555555556666
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHH
Q 001763 881 GFLKEAEEFIEQL-TFEPDSRIWT 903 (1017)
Q Consensus 881 g~~~eA~~~~~~~-~~~p~~~~~~ 903 (1017)
|++++|++.|++. .+.|+..+|.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHH
Confidence 6666666555553 4555444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=77.58 Aligned_cols=153 Identities=19% Similarity=0.143 Sum_probs=88.5
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccC
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHA 844 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 844 (1017)
..+...|.-.|+-+++..+..+....... ...+..+......|++.+|+..+++... +.|+ ..+++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 44555555566666666665554431111 1334456666666777777777776666 3343 35666666666677
Q ss_pred CcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCchHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLTF-EP-DSRIWTTLLGACGVHRDDIRGRLA 921 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 921 (1017)
|+.++|..-|.+..+ +.|+ +..+++|.-.|.-.|+++.|+.++..... .+ |+.+-.+|.-.-..+|+++.|+..
T Consensus 148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 777777776666665 3332 34556666666666666666666655432 22 555566666666666666666655
Q ss_pred HHHH
Q 001763 922 AKKL 925 (1017)
Q Consensus 922 ~~~~ 925 (1017)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.5e-07 Score=60.28 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=17.7
Q ss_pred cCCCCcchHHHHHHHHHcCCCchhHHHhhhcC
Q 001763 186 GFESSSFCKGALIDMYAKLNNVSDARRVFDGA 217 (1017)
Q Consensus 186 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 217 (1017)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.6e-06 Score=86.67 Aligned_cols=217 Identities=15% Similarity=0.053 Sum_probs=142.6
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
-..-.|++..+..-.+ ........+.....-+...|...|+.+.++.-+..-..+... ....+...+...++-+.++.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~-av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQ-AVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCH-HHHHHHHHHCTSTTHHCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHH-HHHHHHHHHhCccchHHHHH
Confidence 3445677777765444 222222223445556778888999988877666655555555 55555554444356666766
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-C
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-F 895 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~ 895 (1017)
-+++.+..+..++. ........++.+.|++++|+++++.. .+.+.....|.+|.+.||++.|.+.++.|. .
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66665544333233 34445556788999999999876542 457777888999999999999999999985 5
Q ss_pred CCCHHHHHHHH-HHHHh--cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 896 EPDSRIWTTLL-GACGV--HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 896 ~p~~~~~~~ll-~~~~~--~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
..|..+..... +.-.. ..++..|...|+.+.+..|.++..++.++.++...|+|++|.++.....+..
T Consensus 161 ~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 161 DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 66665433222 22222 2368999999999999888899999999999999999999999987765433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.7e-05 Score=78.77 Aligned_cols=145 Identities=16% Similarity=0.133 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVD 875 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~ 875 (1017)
.|.-..-.+...|++++|+..+++++. -.||+..| ......+...|+..+|.+.+++++. ..|+. ...-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 666666777788999999999999888 46877655 4455678889999999999999887 56663 34556778
Q ss_pred hhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHH
Q 001763 876 LLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~ 953 (1017)
+|...|+..||+..++... .+.|+..|..|..+|...|+..++..+. +..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 8999999999999888753 3347789999999999999877765543 56788899999999
Q ss_pred HHHHHHHHcCC
Q 001763 954 TLRREMREKGV 964 (1017)
Q Consensus 954 ~~~~~m~~~~~ 964 (1017)
......+++.-
T Consensus 446 ~~l~~A~~~~~ 456 (484)
T COG4783 446 IFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHhcc
Confidence 99888887644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.8e-05 Score=89.37 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=120.0
Q ss_pred CCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHH
Q 001763 760 YDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLG 836 (1017)
Q Consensus 760 ~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 836 (1017)
...++..+..|..+....|++++|+.+++...+ |+....+..++..+.+.+++++|+..+++.++ ..|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 334688999999999999999999999999886 77777899999999999999999999999999 57888 45677
Q ss_pred HHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 001763 837 VLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLG 907 (1017)
Q Consensus 837 l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~ 907 (1017)
+..++.+.|++++|..+|+++.. ..+-+...+..+..+|...|+.++|...+++.- ..|...-|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 77788999999999999999987 222336678888999999999999999999862 4455555555553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00024 Score=68.25 Aligned_cols=169 Identities=11% Similarity=0.122 Sum_probs=116.2
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccC
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHA 844 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 844 (1017)
-.+.-+...+|+.+.|...++++.. |+....-.--+.-+-..|++++|+++++.+++.+ |+ .+++.--+.+.-..
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHc
Confidence 3344455567777777777776654 3322121222333556688888888888888864 54 46776666666667
Q ss_pred CcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CchHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHR---DDIRGR 919 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~ 919 (1017)
|+--+|++.+....+. ..-|.+.|.-+.++|...|.+++|.=.++++ -+.| ++.....|....+..| |.+.+.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777888888877773 3557778888888888888888888888886 3566 4445566666655544 778899
Q ss_pred HHHHHHHhhCCCCCchHHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
..|++++++.|.+..+++.+.
T Consensus 212 kyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHhChHhHHHHHHHH
Confidence 999999999997766655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.1e-05 Score=90.61 Aligned_cols=205 Identities=13% Similarity=0.081 Sum_probs=134.5
Q ss_pred CCCCCh-HHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehh
Q 001763 621 GLSPND-ITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTA 699 (1017)
Q Consensus 621 g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 699 (1017)
++.|+. ..+..|+..+...++++++.++....++.. |.....+..++.+|...++.+++..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--------------~ 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--------------N 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------------h
Confidence 444543 456666777767777777777776655555 56666666666666666666555443 1
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
++.......++.-...+...|... .-+...+..+..+|-+.|+.+++..+++++++.++. |+.+.|.++..|+.. +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 222333333442222233334332 223457778888899999999999999999999976 899999999999999 9
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH---------------------HHHH
Q 001763 780 VKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF---------------------LGVL 838 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---------------------~~l~ 838 (1017)
+++|++++.+... .|....++.++.+++.++.+ ..|+.+.+ ..+-
T Consensus 165 L~KA~~m~~KAV~------------~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 165 KEKAITYLKKAIY------------RFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH------------HHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 9999998765432 24455677777777777777 45654333 2222
Q ss_pred HHcccCCcHHHHHHHHHHhhh
Q 001763 839 TACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 839 ~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..|...++|++++.+++.+++
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHh
Confidence 456666777777777777766
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.24 E-value=9e-06 Score=75.07 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=74.7
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
.....++..+...|++++|.+.+++. ...| ++..|..++..+...|+++.|...++++++.+|+++..++.++.+|..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44555666666777777777777664 3344 556777788888888999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHc
Q 001763 946 LGNWNEVNTLRREMREK 962 (1017)
Q Consensus 946 ~g~~~~a~~~~~~m~~~ 962 (1017)
.|++++|.+.+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999988777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00012 Score=86.22 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=109.0
Q ss_pred CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcC-----HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcc
Q 001763 691 PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPD-----QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEI 765 (1017)
Q Consensus 691 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 765 (1017)
|.+.+.|-..|.-+.+.++.++|.+++++.+.. +.+. .-.|.++++.-...|.-+...++|+++.+..- --.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 445566766666677777777777777776543 2222 13466666665566666666666666655432 134
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hHhHHH-HHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD--DVTFLG-VLTA 840 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~-l~~~ 840 (1017)
+|..|...|.+.+++++|.++++.|.+ +.....|...+..+.++++.++|-.++++.++ .-|. ++-+.. .+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHH
Confidence 566666677777777777777776665 22333666666666666666667677766666 3343 332222 2222
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
-.+.|+.+.|..+|+-.+..| +-..+.|+..+|+-.+.|..+.++.+|++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 345566666666666655522 11233444444444444444444444444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00019 Score=75.83 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=110.6
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDA 815 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 815 (1017)
.....|.+++|+..+..+++..+. |+......++.+.+.|+.++|.+.++++.. |+....|.++..+|.+.|+..+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345678888888888888877775 777788888899999999999999988876 44344778888899999999999
Q ss_pred HHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC
Q 001763 816 LKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT 894 (1017)
Q Consensus 816 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~ 894 (1017)
+.+++..... .| |...|..|..+|...|+..++...+-+ .|...|++++|+.+.....
T Consensus 394 i~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 394 IRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHH
Confidence 9988888875 35 447888899999999988888775544 3557888999988886652
Q ss_pred --CCCCHHHHH
Q 001763 895 --FEPDSRIWT 903 (1017)
Q Consensus 895 --~~p~~~~~~ 903 (1017)
.+++...|.
T Consensus 453 ~~~~~~~~~~a 463 (484)
T COG4783 453 QQVKLGFPDWA 463 (484)
T ss_pred HhccCCcHHHH
Confidence 445555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.7e-05 Score=81.14 Aligned_cols=165 Identities=8% Similarity=-0.003 Sum_probs=114.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH-----------
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC----------- 870 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----------- 870 (1017)
..++...|++++|...--..++ +.++. .....-..++...++.+.|+..|++.+. +.|+-...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 3456777888888887777777 34433 3333334455677888888888888765 44542211
Q ss_pred --HHHHHhhhccCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 871 --ACMVDLLGRWGFLKEAEEFIEQL-TFEPD-----SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 871 --~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
..-.+-.-+.|++.+|.+.+... .+.|+ ...|.....+....|+..+|+.-.+.+++++|.-..+|..-++.
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11133456889999999988764 45554 44566666667788999999999999999999999999999999
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCccCCceeE
Q 001763 943 YAALGNWNEVNTLRREMREKGVKKFPGCSW 972 (1017)
Q Consensus 943 y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~ 972 (1017)
|...++|++|.+-+++..+......+..+|
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 999999999988777665544333333333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00017 Score=74.06 Aligned_cols=305 Identities=12% Similarity=-0.006 Sum_probs=185.8
Q ss_pred chhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHH--
Q 001763 643 HLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYR-- 718 (1017)
Q Consensus 643 ~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~-- 718 (1017)
..+...+..+++.. |++...|..-+..|.-.|++++|.--.+.-.. +...-.......++...++..+|.+.++
T Consensus 66 ~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~ 143 (486)
T KOG0550|consen 66 GNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK 143 (486)
T ss_pred HHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhh
Confidence 33334444444444 44555555555556666666665544433222 1122222233333333343333333332
Q ss_pred -------------HHHHCCC-CcCHHhHHHHHH-HHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHH
Q 001763 719 -------------EMRSHNV-LPDQATFVSVLR-ACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 719 -------------~m~~~~~-~pd~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
....... +|.-.++..+-. ++...|++++|..+--.+++.+.. +......-..++.-.++.+.|
T Consensus 144 ~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka 222 (486)
T KOG0550|consen 144 QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKA 222 (486)
T ss_pred hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHH
Confidence 2222211 243455555544 446688999999998888887765 555555555666778899999
Q ss_pred HHHHHhccCCChh--------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----hHhHHHHHHHcccC
Q 001763 784 AQVFDEMAERNYV--------------ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-----DVTFLGVLTACSHA 844 (1017)
Q Consensus 784 ~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~ 844 (1017)
+..|++...-++. ..|..=.+-..+.|++.+|.+.|.+.+. +.|+ ...|.....+....
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhccc
Confidence 9999988764432 2355566777899999999999999988 4554 34677778888999
Q ss_pred CcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC------------------HHHHHH
Q 001763 845 GRVSEGRQIFETMVSCHGIQPRV-DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD------------------SRIWTT 904 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~------------------~~~~~~ 904 (1017)
|+..+|+...+...+ +.|.. ..|-.-..++...+++++|.+-+++. ....+ ..-|..
T Consensus 301 grl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~yk 377 (486)
T KOG0550|consen 301 GRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYK 377 (486)
T ss_pred CCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHH
Confidence 999999999888766 66653 45555566777788899999888764 32222 112444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCC-ch-------HHHHHHHHHhcCCcHHHHHH
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPENP-SP-------YVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~~-~~-------~~~l~~~y~~~g~~~~a~~~ 955 (1017)
+++.-+...+.+......+.+|...|+-. .. +-..++.|...++..++.+.
T Consensus 378 ilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 378 ILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 44444444555666666666777788532 22 45667777777777776543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00023 Score=68.94 Aligned_cols=162 Identities=12% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 716 FYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 716 ~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
+.+.+.......+......-...|.+.+++++|........ +..+...=+.++.|..+++-|++.+++|..-+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 34444444333343333334456777777777777655411 333344445566677777777777777776444
Q ss_pred hHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHH
Q 001763 796 VISWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCA 871 (1017)
Q Consensus 796 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 871 (1017)
..+.+.++.++.+ .+++.+|.-+|++|-+. ..|+..+.++.+.+|...|++++|..+++..+.+. .-++++..
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~ 245 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLA 245 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHH
Confidence 4344444444332 23567777777777664 45666777777777777777777777777776632 22355555
Q ss_pred HHHHhhhccCCHHHH
Q 001763 872 CMVDLLGRWGFLKEA 886 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA 886 (1017)
+++.+-...|+-.++
T Consensus 246 Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHhCCChHH
Confidence 555555555554433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0054 Score=62.85 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=160.3
Q ss_pred CCchHHHHHHHHHHHCCCCcCH--HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHH
Q 001763 708 DSNYEALHFYREMRSHNVLPDQ--ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQ 785 (1017)
Q Consensus 708 g~~~~A~~~~~~m~~~~~~pd~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~ 785 (1017)
|++++|.+-|+.|.. .|.. .-+..|.-.-...|+.+-|+++-+..-..-+. -.-.+.+.++..+..|+|+.|++
T Consensus 134 G~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 134 GDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred CchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHH
Confidence 555555555555543 2221 12333333445788999999988888776665 45677788999999999999999
Q ss_pred HHHhccC-----CChh-HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHcccCCcHHHHHHHHH
Q 001763 786 VFDEMAE-----RNYV-ISWNSMIVGFA---KNGYAEDALKVFHEMKETQAMPDDV-TFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 786 ~~~~~~~-----~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
+.+.-.. ++.. ..--.|+.+-+ -.-+...|...-.+..+ +.||.+ .-+.-..++.+.|+..++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 9986543 4433 11222332222 12346667777777777 678874 44556778999999999999999
Q ss_pred HhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHh---C-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 856 TMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQ---L-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 856 ~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~---~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
.+-+ ..|+++.....+ +.|.|+.- .+-+++ + ..+||+. .-.+...+-...|++..|...++.+...+|
T Consensus 288 ~aWK---~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p 360 (531)
T COG3898 288 TAWK---AEPHPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP 360 (531)
T ss_pred HHHh---cCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc
Confidence 9966 788887654433 34555522 222222 1 3566554 444555667788999999999999999999
Q ss_pred CCCchHHHHHHHHHhc-CCcHHHHHHHHHHH
Q 001763 931 ENPSPYVQLSNIYAAL-GNWNEVNTLRREMR 960 (1017)
Q Consensus 931 ~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~ 960 (1017)
...+|.+|+++-... |+-+++.+...+..
T Consensus 361 -res~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 361 -RESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred -hhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 456889999998877 88888877765443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.04 Score=63.14 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCcHH---HHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChh-HHHH-HHHHHH
Q 001763 732 FVSVLRACAVLSSLR---DGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYV-ISWN-SMIVGF 806 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~-~l~~~~ 806 (1017)
.+.++..|.+.++.. +|+-+++......+. |..+--.|+.+|+-.|-+..|.++++.+.-+++. .+.. -+..-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence 345556666666544 344444544444443 5556667788888888888888888877654432 1111 223334
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHH---HHHHHHhhhhcCCCcC-chhHHHHHHhhhcc
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEG---RQIFETMVSCHGIQPR-VDHCACMVDLLGRW 880 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a---~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~ 880 (1017)
...|++..+...+++.+.- --++ .+-.....||. -|.+.+. ...-+++.. ...-. ...=+...+.++..
T Consensus 518 ~t~g~~~~~s~~~~~~lkf--y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~--S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF--YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMH--SLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HhcccchhHHHHHHHHHHH--HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666555441 1111 12222233332 2333322 222222221 00000 11123345667777
Q ss_pred CCHHHHHHHHHhCCCCC
Q 001763 881 GFLKEAEEFIEQLTFEP 897 (1017)
Q Consensus 881 g~~~eA~~~~~~~~~~p 897 (1017)
++.++-...+..|..+|
T Consensus 593 ~~~~q~~~~~~~~~l~~ 609 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPP 609 (932)
T ss_pred CcHHHHHHHHhccccCc
Confidence 77777777777765444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.026 Score=60.77 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccC---cHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHH
Q 001763 711 YEALHFYREMRSHNVLPDQATFVSVLRACAVLS---SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVF 787 (1017)
Q Consensus 711 ~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~ 787 (1017)
+++.+++++..+.-..-+..+|..+.+--...- ..+....+++.++.....--.-+|..+++.-.|..-++.|+.+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455556665554322333334433332211111 23444444444443322212346677777777777777777777
Q ss_pred HhccCCCh----hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcC
Q 001763 788 DEMAERNY----VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHG 862 (1017)
Q Consensus 788 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 862 (1017)
.+..+... +....+++.-||. ++.+-|.++|+--++. .+|...| ...+.-+++.++-+.+..+|++.+.. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~ 465 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V 465 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c
Confidence 77765222 2244555555544 6677777777766552 3555333 33455556777777777888877774 5
Q ss_pred CCcC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 863 IQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 863 ~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+.|+ .+.|..|++-=..-|++.-+.++-+++
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5554 456777777777777777777776553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.01 Score=63.66 Aligned_cols=148 Identities=15% Similarity=0.132 Sum_probs=89.3
Q ss_pred hhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhcCCc-hhhHHHHHHHHhhccCChhHHHHHHh
Q 001763 405 AHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLAT-NLYVGNALVDMYAKSRALEEARKQFE 483 (1017)
Q Consensus 405 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~ 483 (1017)
.+...+.+.++...-..--..+|...++..-+..-++.|+.+|..+.+.+..+ +++++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44455555555443222223456666666667777777777777777776655 77777777776664 56667777776
Q ss_pred hcCC--CCccc-chhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCcchhHHHHHhhhCCCCCc
Q 001763 484 RIQN--QDNVS-WNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTSLETSN 560 (1017)
Q Consensus 484 ~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~i~~~~~~~~~~~~~ 560 (1017)
.-.. +|.-. -+..+.-+...++-..|..+|++....++.||. .
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k----------------------------------s 471 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK----------------------------------S 471 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh----------------------------------h
Confidence 5432 22222 223344444455555555566655554444331 4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcC
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCM 587 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~ 587 (1017)
..+|..+++--..-|++..+.++-+++
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 567888888888888888887776554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=70.35 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred HHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhC-C
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQL-T 894 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~ 894 (1017)
.++++++ ..|+. .....++..+...|++++|.+.|+.+.. ..| +...+..+..+|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666 45655 4456667777788888888888888776 233 4566777788888888888888887775 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 895 FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 895 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
..| +...|..++..+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 55678888888888999999999999999999977654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=7e-06 Score=54.66 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCCCh
Q 001763 122 LAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNG 156 (1017)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 156 (1017)
++||+||++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=53.74 Aligned_cols=35 Identities=40% Similarity=0.727 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 001763 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQ 257 (1017)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 257 (1017)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=63.13 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-CcHHHHHHHHHHHHc
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG-NWNEVNTLRREMREK 962 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~~ 962 (1017)
++.+|..++..+...|+++.|+..++++++++|+++.+++.+|.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46689999999999999999999999999999999999999999999999 799999999877653
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.9e-05 Score=79.61 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=88.9
Q ss_pred HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 001763 835 LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVH 912 (1017)
Q Consensus 835 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 912 (1017)
.+|+..+...+++++|+.+|+++.+. .|+ ....++.++...++-.+|.+++++. ...| +...+..-...|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34555666667777777777776652 233 4444666666667777777777664 3344 444555555668888
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++.+.|...++++.++.|++...+..|+.+|.+.|+|++|+.....+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999987766553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00034 Score=65.09 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc--hhHHH
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV--DHCAC 872 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 872 (1017)
|..++..+ ..++..++.+.++++.+. .|+. .....+...+...|++++|...|+.+... ...|.. .....
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 356666666667776664 2333 23344555666677777777777776662 111211 12233
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKL 925 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 925 (1017)
+..++...|++++|++.++..+..+ .+..+..++.++...|+.+.|+..|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 4555566666666666665543222 2233444445555555555555555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.094 Score=60.26 Aligned_cols=155 Identities=10% Similarity=0.075 Sum_probs=89.7
Q ss_pred HHHHHhccCCCccc---hhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC---CCCceeehhhhhh
Q 001763 630 TSLLDACDGPYKFH---LGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN---PKSTVLWTAVISG 703 (1017)
Q Consensus 630 ~~ll~a~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~ 703 (1017)
+.+++.|.+.++.. +|.-+++.-+... |.+...-..++.+|.-.|-+..|.++|+.+.- ..|+..|- +..-
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 45667777776655 3333344444443 67888888899999999999999999998764 12222221 2233
Q ss_pred cccCCCchHHHHHHHHHHHC---CCCcCHHhHHHHHHHHhccCcHHHHHHHH---HHHHHhCCCCCcchHhHHHhHHHhc
Q 001763 704 HAQNDSNYEALHFYREMRSH---NVLPDQATFVSVLRACAVLSSLRDGGEIH---SLIFHTGYDLDEITGSALIDMYAKC 777 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~---~~~pd~~t~~~ll~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~y~~~ 777 (1017)
+...|++..+...++....- ..+ +..-|.++ | .+.|.+.+..+.. +++...--..-..+-+..++..+..
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~k-E~~eyI~~--A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLK-ETPEYIAL--A-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhh-hhHHHHHH--H-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44456776666666554331 100 11112222 2 2445555444433 2333222222344556778888888
Q ss_pred CCHHHHHHHHHhcc
Q 001763 778 GDVKRSAQVFDEMA 791 (1017)
Q Consensus 778 g~~~~A~~~~~~~~ 791 (1017)
++.++=...+..|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 99999888888887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0017 Score=62.65 Aligned_cols=163 Identities=13% Similarity=0.181 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
.+..+.-+....|+.+.|...++++.+. .|.+.-. ..-.--+...|++++|+++|+..+++. +-|...|--=+.+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 4555666667789999999999998885 3665322 222223567899999999999998842 3345566666777
Q ss_pred hhccCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC---cHH
Q 001763 877 LGRWGFLKEAEEFIEQL--TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN---WNE 951 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~---~~~ 951 (1017)
+-..|+..+|++-+.+. .+..|...|.-|...|...|+++.|.-.+|.++=+.|.++-.+-.|+.+++-.|- ..-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888999888775 3667899999999999999999999999999999999999999999999988775 344
Q ss_pred HHHHHHHHHHcCC
Q 001763 952 VNTLRREMREKGV 964 (1017)
Q Consensus 952 a~~~~~~m~~~~~ 964 (1017)
|.+.+.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 5666666555444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.7e-06 Score=52.75 Aligned_cols=33 Identities=39% Similarity=0.673 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 922 AKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 922 ~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
++++|+++|+|+.+|+.||++|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.4e-05 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.423 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHcCCChhhHHHHHHHHHhCCCCC
Q 001763 121 ILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVP 154 (1017)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 154 (1017)
+++||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3588999999999999999999999999888877
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00023 Score=66.24 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHH----HHHHHHH
Q 001763 834 FLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSR----IWTTLLG 907 (1017)
Q Consensus 834 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~----~~~~ll~ 907 (1017)
|..++.++ ..|++..+...++.+.++++-.| .....-.+...+...|++++|.+.++.+. ..||+. .+..|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344444 48888899999999988654443 22344456788999999999999999863 334442 4455667
Q ss_pred HHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHH
Q 001763 908 ACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 908 ~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 958 (1017)
.+...|+++.|...++. +...+..+..+..+|++|.+.|++++|.+.|++
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999876 445556778899999999999999999999875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0013 Score=63.97 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=101.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHH----Hhhh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMV----DLLG 878 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~----~~l~ 878 (1017)
+..|+..|++++|++..+.... -+ ....-...+.+..+.+-|.+..++|.+ + .+..+.+.+. ..-.
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~----lE--~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN----LE--AAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhc
Confidence 3457778889999888776211 12 222222334567778888888888876 2 2334454444 4445
Q ss_pred ccCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHH
Q 001763 879 RWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
-.+++.+|.-+++++. ..|++.+.+-.+..|...|++++|+...+.++..+|+++..+.++.-.-...|+-.++.+
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 5667899999999984 567777777777778888999999999999999999999999988888888888776654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=50.91 Aligned_cols=34 Identities=29% Similarity=0.637 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 001763 222 TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVP 255 (1017)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 255 (1017)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.2e-05 Score=64.98 Aligned_cols=77 Identities=21% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 001763 881 GFLKEAEEFIEQLT-FEP---DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR 956 (1017)
Q Consensus 881 g~~~eA~~~~~~~~-~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 956 (1017)
|++++|+.+++++. ..| +...|..++..+...|++++|...+++ .+.+|.++...+.+|.+|.+.|+|++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554431 122 445666677788888888888888888 7788888788888899999999999998887
Q ss_pred HH
Q 001763 957 RE 958 (1017)
Q Consensus 957 ~~ 958 (1017)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.1e-05 Score=59.73 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=47.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 905 LLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 905 ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
++..+...|+++.|+..++++++.+|+++.++..+|.+|...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44566778888888888888888888888888888888888888888888888776543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=64.69 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+..++.++...|+++.|...+++++...|++ +.++..++.+|.+.|++++|.+.++.+.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444445555555555555555555543 334555555555555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00037 Score=74.98 Aligned_cols=122 Identities=10% Similarity=0.083 Sum_probs=82.6
Q ss_pred HHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcH
Q 001763 769 ALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 769 ~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 847 (1017)
.|+..+...++++.|+++|+++.+.++. .+..++..+...++-.+|++++++.++. .|.. ..+..-...|...|++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe-v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE-VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 3445555667777777777777776655 5555677777777777777777777763 4543 3344444556677777
Q ss_pred HHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhCCCC
Q 001763 848 SEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLTFE 896 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~ 896 (1017)
+.|+++.+++.+ +.|+ .+.|..|+.+|...|++++|+-.++.+|..
T Consensus 251 ~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 251 ELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 777777777776 5554 457777777777777777777777777643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=72.37 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=86.7
Q ss_pred CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCchHHHHHHHHHHhhCCCCCchHHH
Q 001763 864 QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGV---HRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 864 ~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
+-|.+.|..|...|.+.|+.+.|...+.+. .+.| ++.++..+..++.. ..+..++..++++++.+||.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446677888888888888888888888765 4444 56678877766443 236688999999999999999999999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeE
Q 001763 939 LSNIYAALGNWNEVNTLRREMREKGVKKFPGCSW 972 (1017)
Q Consensus 939 l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~ 972 (1017)
|+..++..|++.+|...|++|.+......|..+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999999999999876654444333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00031 Score=63.64 Aligned_cols=101 Identities=9% Similarity=-0.014 Sum_probs=80.0
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHH
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTA 840 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~ 840 (1017)
......+...+...|++++|.++|+-+.. +....-|..|..++...|++++|+..|..... +.||. ..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 34455667777888999999999987665 44445889999999999999999999999988 45665 678888888
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcC
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPR 866 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~ 866 (1017)
+...|+.+.|.+.|+..+...+-.|.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccChh
Confidence 99999999999999998874443433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=61.77 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=73.5
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
+..++..+.+.|++++|.+.+++. ...| +...|..++..+...|+++.|...++++++..|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566677778888888777764 3444 34567777777888899999999999999999998889999999999999
Q ss_pred CcHHHHHHHHHHHHc
Q 001763 948 NWNEVNTLRREMREK 962 (1017)
Q Consensus 948 ~~~~a~~~~~~m~~~ 962 (1017)
++++|.+.+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999888776543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00032 Score=76.05 Aligned_cols=107 Identities=11% Similarity=0.091 Sum_probs=67.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccC
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWG 881 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g 881 (1017)
+..+...|++++|++.|+++++ ..|+. ..|..+..+|.+.|++++|+..++++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---------------------- 64 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---------------------- 64 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Confidence 3444555666666666666666 34543 4455555566666666666666665554
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 882 FLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 882 ~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+.| +...|..++.+|...|+++.|+..++++++++|+++.....+..+..+.
T Consensus 65 -------------l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 65 -------------LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 233 3445666666777777777777777888888887777777766664444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.003 Score=64.10 Aligned_cols=180 Identities=9% Similarity=0.029 Sum_probs=114.1
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFL 835 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~ 835 (1017)
++......+..+...|++++|++.|+.+.. |+.. .+...++.+|.+.+++++|+..+++.++. .|++ +.+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHH
Confidence 444455566677778999999999988876 3322 12345677888889999999999998883 4544 3333
Q ss_pred HHHHHccc--CC---------------c---HHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCC
Q 001763 836 GVLTACSH--AG---------------R---VSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTF 895 (1017)
Q Consensus 836 ~l~~~~~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~ 895 (1017)
....+.++ .+ + ..+|+..|+.+++.| -......+|...+..+..
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y----------------P~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY----------------PNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC----------------cCChhHHHHHHHHHHHHH
Confidence 33333221 11 1 234555555555533 222334444443333210
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 896 EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 896 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.--. --...+.-|.+.|.+.-|+.-++.+++..|+. ..++..+...|...|..++|.++...+..
T Consensus 173 ~la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 173 RLAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 0000 00123344778899999999999999998854 66788999999999999999998877654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=64.70 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=77.3
Q ss_pred HHHHhhhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCc
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQLT-FEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~ 949 (1017)
....-+-..|++++|+.+|+-+. ..| ++.-|..|+..|+..++++.|+..|..+.-++++||.+++..|..|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 33444567888999998888753 344 5667888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001763 950 NEVNTLRREMRE 961 (1017)
Q Consensus 950 ~~a~~~~~~m~~ 961 (1017)
++|...+....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00033 Score=62.84 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM 873 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 873 (1017)
.+...+..+...|++++|++.|+++++. .|+. ..+..+..++.+.|++++|...|+.+...+ |+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~------- 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PK------- 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CC-------
Confidence 3444555555555555555555555542 2321 233344445555555555555555544311 11
Q ss_pred HHhhhccCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchH
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPY 936 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~ 936 (1017)
.| ...+|..++.++...|+.+.|...++++++..|+++.+.
T Consensus 72 ----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 72 ----------------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred ----------------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 11 134566666777778888888888888888888776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00047 Score=66.41 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD--DVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMV 874 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 874 (1017)
.+..++..+...|++++|+..|++.++....|+ ...+..++.+|.+.|++++|+..+++..+ +.|+ ...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 567777778888888888888888877433332 24667777778888888888888888776 3443 44555666
Q ss_pred HhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 001763 875 DLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
.+|...|+...|..-.+.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666665554332221 123567888888899988876 5555555555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=77.89 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=74.8
Q ss_pred HhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
..+.+.|++++|++.+++. ...| +...|..++.++...|+++.|+..++++++++|+++.+|+.+|.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3455677788888777765 4555 4557888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 001763 953 NTLRREMREK 962 (1017)
Q Consensus 953 ~~~~~~m~~~ 962 (1017)
...+++..+.
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 9999877654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6e-05 Score=48.35 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHcCCChhhHHHHHHHHHhCCC
Q 001763 122 LAWNSILSMYSKRGSFENVFKSFGLLCNRGG 152 (1017)
Q Consensus 122 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 152 (1017)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0003 Score=67.52 Aligned_cols=92 Identities=13% Similarity=-0.056 Sum_probs=68.4
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD----SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
..|..++..+...|++++|+..+++. ...|+ ..+|..++..+...|+.++|+..++++++++|.+...+..++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34445555566666666666666554 22222 24788888889999999999999999999999999999999999
Q ss_pred HH-------hcCCcHHHHHHHHHH
Q 001763 943 YA-------ALGNWNEVNTLRREM 959 (1017)
Q Consensus 943 y~-------~~g~~~~a~~~~~~m 959 (1017)
|. ..|++++|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 99 888888666555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00039 Score=66.97 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
..|..++..+...|+++.|+..++++++..|+++..+..++.+|...|+
T Consensus 73 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 73 YILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4677777888888999999999999999999999999999999988877
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.8e-05 Score=47.55 Aligned_cols=31 Identities=39% Similarity=0.719 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 001763 223 VSWTSMIAGYVQAGLPEAAFELFEKMIKVGC 253 (1017)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 253 (1017)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988773
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=62.18 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHH
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACM 873 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 873 (1017)
..|..++..+...|++++|+..|++.+.....|.. .++..+..+|.+.|++++|+..+++... +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 36778888888889999999999988874322222 4677888888889999999999888876 3443 3445555
Q ss_pred HHhhh-------ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 874 VDLLG-------RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 874 ~~~l~-------~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
..++. +.|++++|.. .+++|...++++++.+|++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH
Confidence 55555 3334333332 23467778888888888543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00078 Score=69.06 Aligned_cols=257 Identities=11% Similarity=0.067 Sum_probs=166.4
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCH----HhHHHHHHHHhccCcHHHHHHHHHHH--HH--hCCC-CCcchHhHHHhHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQ----ATFVSVLRACAVLSSLRDGGEIHSLI--FH--TGYD-LDEITGSALIDMY 774 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~----~t~~~ll~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l~~~y 774 (1017)
+++.|+....+.+|+..++.| .-|. ..|..|.++|.-.+++++|.++|..= +. .|-+ -.......|++.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 566777777788888877766 3333 34666677888888888888887532 11 1111 1234445577777
Q ss_pred HhcCCHHHHHHHHHhccC----CC-hh---HHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHCC
Q 001763 775 AKCGDVKRSAQVFDEMAE----RN-YV---ISWNSMIVGFAKNGY--------------------AEDALKVFHEMKETQ 826 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~----~~-~~---~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m~~~g 826 (1017)
--.|.+++|.-...+-.. -+ -+ .++..+.+.|-..|+ .+.|.+.|.+=++..
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888765432221 11 11 356677777765553 123445554433210
Q ss_pred C-CCCh----HhHHHHHHHcccCCcHHHHHHHHHHhh---hhcCCCcC-chhHHHHHHhhhccCCHHHHHHHHHhC----
Q 001763 827 A-MPDD----VTFLGVLTACSHAGRVSEGRQIFETMV---SCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL---- 893 (1017)
Q Consensus 827 ~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~---- 893 (1017)
- --|. ..|..|.+.|.-.|++++|+..-+.-+ ++||-+.. ...+.++.+++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 0 0122 367788888888999999988765432 33555443 456888999999999999999888652
Q ss_pred -CC---CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC------CCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 894 -TF---EPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP------ENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 894 -~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p------~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
.+ ........+|++.|..-.+++.|+....+=+.+.. ...-++..|++.|...|..++|....++-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 11 12334567788888888899999988877655422 3456799999999999999999876555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=55.07 Aligned_cols=61 Identities=25% Similarity=0.265 Sum_probs=47.7
Q ss_pred HHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 873 MVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
+...+.+.|++++|++.+++. ...|+ ...|..++.++...|++++|+..++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345667778888888887775 45664 44888899999999999999999999999999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0021 Score=72.71 Aligned_cols=75 Identities=21% Similarity=0.135 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEE
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIV 974 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~ 974 (1017)
++.+|..+.-.....|++++|...++++++++| +..+|..+|.+|...|+.++|.+.+++....... .|.+-|++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~-~pt~~~~~ 493 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG-ENTLYWIE 493 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CchHHHHH
Confidence 445566555555556777777777777777777 4667777777777777777777777666554443 23344443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00073 Score=67.17 Aligned_cols=95 Identities=9% Similarity=0.142 Sum_probs=78.5
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh--hHHHHHHHHHHHhCCCHHHHH
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY--VISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
....+++++|...+..+++..+. |++.|..-.-+|.+.|.++.|++-.+....-|. ..+|..|..+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 45678888999999888888877 888888888899999999999998888776443 357888999999999999999
Q ss_pred HHHHHHHHCCCCCChHhHHH
Q 001763 817 KVFHEMKETQAMPDDVTFLG 836 (1017)
Q Consensus 817 ~~~~~m~~~g~~p~~~~~~~ 836 (1017)
+.|++.++ +.|+..+|-.
T Consensus 170 ~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHhhhc--cCCCcHHHHH
Confidence 99999888 7888876644
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=56.95 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=43.4
Q ss_pred hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 911 VHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 911 ~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
..|+++.|+..++++++.+|+++.+...|+.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999999998888765543
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=55.53 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 907 ~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.++...++++.|...++++++++|+++..+..+|.+|...|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4567788888888888888888888888888888888888888888888887775543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0023 Score=56.10 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh-HHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH-CACMV 874 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~ 874 (1017)
.+.....++...|+.++|+.+|++.++.|+.+.. ..+..+.+++...|++++|..+++.....++-.+.... ...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4556778888999999999999999998876653 47788899999999999999999998875432221222 23344
Q ss_pred HhhhccCCHHHHHHHHHh
Q 001763 875 DLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~ 892 (1017)
.++...|+.+||++.+-.
T Consensus 83 l~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 577888999998887654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0086 Score=54.86 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC-CcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCC---CHHHH
Q 001763 828 MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGI-QPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP---DSRIW 902 (1017)
Q Consensus 828 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p---~~~~~ 902 (1017)
-|....-..|..+....|++.||...|++... |+ .-|....-.+..+....++..+|...++++ ..+| .+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 34444445556666666666666666666554 33 223444445555555666666666666553 2222 12234
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
..+...+...|..+.|+.+++.++.-.| .+.+-...+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4456778888999999999999999988 5777788889999999998887666555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0016 Score=55.21 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|..++..+...|++++|+..++++.+. .|+. ..+..+..++...|++++|.+.|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555542 2322 334444444444455555555554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.031 Score=61.14 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=29.3
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-CCCC
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-FEPD 898 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~ 898 (1017)
+-+...+.-|.++|.+|-+ ...++++....|+++||..+.++.| ..||
T Consensus 757 lk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 3344445566667766643 2346677777777777777777765 3444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00041 Score=57.39 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcC-chhHHHHHHhhhccCCHHHH
Q 001763 809 NGYAEDALKVFHEMKETQA-MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 809 ~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA 886 (1017)
.|++++|+.+++++++... .|+...+..+..+|.+.|++++|+.++++ .+ ..|. ......++.+|...|+++||
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4677777777777777422 11233444567777777777777777766 22 2222 22222335666666666666
Q ss_pred HHHHHh
Q 001763 887 EEFIEQ 892 (1017)
Q Consensus 887 ~~~~~~ 892 (1017)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666553
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.015 Score=63.34 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=22.0
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCch-HHHHHHHHHH
Q 001763 567 LIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVE-DAVVLYRGMQ 618 (1017)
Q Consensus 567 l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-~A~~l~~~m~ 618 (1017)
+.+.++-.|++.+|-++|.+ +|.. .|+++|.+|+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR 672 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR 672 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence 34445557788888877764 3455 6777776665
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.42 Score=50.83 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=116.1
Q ss_pred HhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch-----HhHHHhHHHh----cCCHHHHHHHHHhccCCChh--HH
Q 001763 730 ATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT-----GSALIDMYAK----CGDVKRSAQVFDEMAERNYV--IS 798 (1017)
Q Consensus 730 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~y~~----~g~~~~A~~~~~~~~~~~~~--~~ 798 (1017)
.+|..+++.+.+.++.++|.+.+..+.-.++...... --.+.++.+. --++.+=+.+++.+...|+. ..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL 378 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL 378 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 5688888899999999999999887776655422111 1122233321 11223333344444433332 00
Q ss_pred HHHH---HHHHHhCCC-HHHHHHHHHHHHHCCCCCChHh-HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH
Q 001763 799 WNSM---IVGFAKNGY-AEDALKVFHEMKETQAMPDDVT-FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM 873 (1017)
Q Consensus 799 ~~~l---~~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 873 (1017)
..-| +.-+-+.|. -++|+.+++..++ +.|...- -+.+.. =....|.++...+ ...
T Consensus 379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~---------fvKq~Y~qaLs~~-------~~~-- 438 (549)
T PF07079_consen 379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFL---------FVKQAYKQALSMH-------AIP-- 438 (549)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHH---------HHHHHHHHHHhhh-------hHH--
Confidence 1111 222344444 5667777777666 4443322 221111 0122333333311 001
Q ss_pred HHhhhccCCHHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTFEP----DSRIWTTLLGA--CGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
++-+-++++++..+.| +..+-+.|..| ...+|++.++.....=+.+..| .+.+|-++|-......
T Consensus 439 --------rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 439 --------RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK 509 (549)
T ss_pred --------HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence 1223345666766554 33466777776 5689999999999888999999 9999999999999999
Q ss_pred CcHHHHHHHHH
Q 001763 948 NWNEVNTLRRE 958 (1017)
Q Consensus 948 ~~~~a~~~~~~ 958 (1017)
+++||...+..
T Consensus 510 ~Y~eA~~~l~~ 520 (549)
T PF07079_consen 510 RYQEAWEYLQK 520 (549)
T ss_pred hHHHHHHHHHh
Confidence 99999988853
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=68.03 Aligned_cols=219 Identities=14% Similarity=0.081 Sum_probs=147.9
Q ss_pred HHhccCcHHHHHHHHHHHHHhCCCCC----cchHhHHHhHHHhcCCHHHHHHHHHhc-------cC-CChhHHHHHHHHH
Q 001763 738 ACAVLSSLRDGGEIHSLIFHTGYDLD----EITGSALIDMYAKCGDVKRSAQVFDEM-------AE-RNYVISWNSMIVG 805 (1017)
Q Consensus 738 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~y~~~g~~~~A~~~~~~~-------~~-~~~~~~~~~l~~~ 805 (1017)
-+++.|+.+.+..+|+.+++.|-+ | ..+|..|+++|.-.+++++|.+.-..- -. .+...+-..+.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 467899999999999999988865 4 346788999999999999999875421 11 1112244567778
Q ss_pred HHhCCCHHHHHHHHHHHH----HCCCC-CChHhHHHHHHHcccCCc-------------HHHHHHHHHHhhhh-------
Q 001763 806 FAKNGYAEDALKVFHEMK----ETQAM-PDDVTFLGVLTACSHAGR-------------VSEGRQIFETMVSC------- 860 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~l~~~~~~~g~-------------~~~a~~~~~~m~~~------- 860 (1017)
+...|.+++|+....+-+ +.|=+ -....+..|.+.|-..|+ .+++...|+...+-
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 888899999886544432 22211 122456677777765554 23344444433321
Q ss_pred ---cCCCc-CchhHHHHHHhhhccCCHHHHHHHHHh-CC------CC-CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 861 ---HGIQP-RVDHCACMVDLLGRWGFLKEAEEFIEQ-LT------FE-PDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 861 ---~~~~p-~~~~~~~l~~~l~~~g~~~eA~~~~~~-~~------~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
.|-.- .-..|+.+.+.|.-.|+++.|+.+.+. +. .+ .....+.+|++++...|+++.|.+.|++.+.+
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 123577788888889999999988653 21 11 12336777888888899999999999987654
Q ss_pred ----CC--CCCchHHHHHHHHHhcCCcHHHHHHHH
Q 001763 929 ----EP--ENPSPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 929 ----~p--~~~~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.- ..+..-+.|+|.|.-..++++|+....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 22 346678899999999999999987643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0096 Score=67.53 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhh
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMV 858 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 858 (1017)
|..+.......|++++|...++++++ ++|+...|..++.+|...|+.++|.+.|++..
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333344444444444444444 23444444444444444444444444444443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=66.25 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=61.2
Q ss_pred HHHHHHhhhccCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC---CCchHHHHHH
Q 001763 870 CACMVDLLGRWGFLKEAEEFIEQL-TFEPDS----RIWTTLLGACGVHRDDIRGRLAAKKLIELEPE---NPSPYVQLSN 941 (1017)
Q Consensus 870 ~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~---~~~~~~~l~~ 941 (1017)
|..-++++.+.|++++|+..|++. ...|+. ..+..++..+...|+++.|...|+++++..|+ .+.+++.++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666665553 223332 35666777777788888888888888877775 3566677788
Q ss_pred HHHhcCCcHHHHHHHHHHHHc
Q 001763 942 IYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 942 ~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+|...|++++|.++++.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.021 Score=60.03 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=45.0
Q ss_pred HhHHHhHHHhc-CCHHHHHHHHHhccC----CChh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----h-
Q 001763 767 GSALIDMYAKC-GDVKRSAQVFDEMAE----RNYV----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-----D- 831 (1017)
Q Consensus 767 ~~~l~~~y~~~-g~~~~A~~~~~~~~~----~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~- 831 (1017)
+..++.+|... |++++|++.|++..+ .+.. ..+..++..+.+.|++++|+++|++........+ .
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33455555555 666666666665443 1111 2344555666666666666666666655322111 1
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
..|...+-++...|++..|...|+....
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1223333344556666666666666544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.2 Score=51.95 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=132.1
Q ss_pred HhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHHHHHHHCC-CCcCHHh--HHHHHHHH--h-ccCc
Q 001763 673 MNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHN-VLPDQAT--FVSVLRAC--A-VLSS 744 (1017)
Q Consensus 673 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~pd~~t--~~~ll~~~--~-~~~~ 744 (1017)
.+.|..+.|+..-+.... |.-.=.|.+.+...++.|+++.|+++.+.-.+.. +.+|..- -..|+.+- + -..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 356677777766655443 2233345567777788888888888877765532 3444321 12222221 1 1234
Q ss_pred HHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 001763 745 LRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDA-LKVFHEMK 823 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 823 (1017)
...|+..-.+..+..+.. +..-..-...|.+.|++.++-.+++.+-+..+. .-...+..+.+.|+.-.. ++-.+++.
T Consensus 245 p~~Ar~~A~~a~KL~pdl-vPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~ar~gdta~dRlkRa~~L~ 322 (531)
T COG3898 245 PASARDDALEANKLAPDL-VPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRARSGDTALDRLKRAKKLE 322 (531)
T ss_pred hHHHHHHHHHHhhcCCcc-chHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 556666655555554431 122333456788999999999999988763322 111233344566654322 23333333
Q ss_pred HCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc-cCCHHHHHHHHHhC
Q 001763 824 ETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR-WGFLKEAEEFIEQL 893 (1017)
Q Consensus 824 ~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~-~g~~~eA~~~~~~~ 893 (1017)
. ++||+ .+...+..+-...|++..|..--+.... ..|....|..|.|.-.. .|+-.++..++-+.
T Consensus 323 s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 323 S--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred h--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3 67877 6777788888889999988887777655 78998999999888644 48999999888764
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0069 Score=63.66 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=97.2
Q ss_pred HhHHHhcCCHHHHHHHHHhccC-----CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCh--HhHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE-----RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKE----TQAMPDD--VTFLG 836 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~-----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~ 836 (1017)
++.|...|++++|.+.|.+... .+. ...|...+..|.+. ++++|++.+++..+ .| .|+. ..+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 4455555566665555554432 111 12344445555444 77777777777654 23 3333 35677
Q ss_pred HHHHcccC-CcHHHHHHHHHHhhhhcCCCcC----chhHHHHHHhhhccCCHHHHHHHHHhCC---CC-C--CHHHHHHH
Q 001763 837 VLTACSHA-GRVSEGRQIFETMVSCHGIQPR----VDHCACMVDLLGRWGFLKEAEEFIEQLT---FE-P--DSRIWTTL 905 (1017)
Q Consensus 837 l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~l~~~g~~~eA~~~~~~~~---~~-p--~~~~~~~l 905 (1017)
+...|... |++++|++.|++..+.|..... ...+..++.++.+.|++++|.+.+++.. .+ + ...+-..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 78888888 9999999999999885533322 3346677889999999999999998752 11 1 11122222
Q ss_pred HH---HHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 906 LG---ACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 906 l~---~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
+. .+...||...|...+++..+.+|....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 22 233568999999999999999985433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.35 Score=51.19 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=77.9
Q ss_pred HHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHHHHhhcccCCCc
Q 001763 464 ALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQ 543 (1017)
Q Consensus 464 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 543 (1017)
.-|.-+...|+...|.++-.+..-+|-.-|-..|.+++..+++++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344556678888888888888888888888888999998888876665432 1234778888888888887776
Q ss_pred chhHHHHHhhhCCCCCchHHHHHHHHHHHHcCCHHHHHHHHhcCC
Q 001763 544 GEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSCMP 588 (1017)
Q Consensus 544 ~~~i~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 588 (1017)
|..+...+ .+..-+.+|.++|++.+|.+.--+..
T Consensus 256 A~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 256 ASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 66555431 12567889999999999987654443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0072 Score=55.33 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=92.2
Q ss_pred hhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC--C
Q 001763 857 MVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL---TFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP--E 931 (1017)
Q Consensus 857 m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p--~ 931 (1017)
..++..+.|+..+-..+...+.+.|+..||...+++. ++..|......+..+....++...|...++++.+-.| .
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 3334557898888888999999999999999999885 3566888888888998899999999999999999999 5
Q ss_pred CCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 932 NPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 932 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.|.....++..|...|++.+|+.-++.....
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 6788999999999999999999988877654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=69.67 Aligned_cols=67 Identities=10% Similarity=-0.059 Sum_probs=60.3
Q ss_pred CC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP---YVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 896 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+| +...|.+++.++...|++++|+..++++++++|++..+ |++++.+|...|+.++|.+.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44 55689999999999999999999999999999999855 999999999999999999999888875
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0085 Score=64.94 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCCCChhhHHHHHHHhhcCCChhHHHHHHHHHHHh--cCCCCcchHHHHHHHHHcCCCchhHHHhhhcCC----CCCcc
Q 001763 150 RGGVPNGFTFAIVLSACSKSMDVSYGRQLHCHVIEL--GFESSSFCKGALIDMYAKLNNVSDARRVFDGAV----DLDTV 223 (1017)
Q Consensus 150 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~ 223 (1017)
.+.+.+......+++.+....+++.+..++-..... ....-..+..++|+.|.+.|..+.+..++..-. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345567778888888888888888888887777665 222233444566666666666666666665422 25666
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 001763 224 SWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNL 270 (1017)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 270 (1017)
++|.+|..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666666666655555555555555555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00081 Score=47.15 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHH
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSN 941 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~ 941 (1017)
.+|..+..++...|+.++|+..++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999999998875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0018 Score=51.06 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCC-cHHHHHHHHHHhhh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAG-RVSEGRQIFETMVS 859 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 859 (1017)
.|..++..+...|++++|+..|++.++ +.|+. ..+..+..+|...| ++++|++.|++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 788888888888888888888888888 56766 57788888888888 78888888888776
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00056 Score=53.84 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
.++..++..+...|++++|+..+++++..+|+++..+..++
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34444444455555555555555555555554444444433
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.039 Score=56.10 Aligned_cols=60 Identities=12% Similarity=-0.086 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceee---hhhhhhcccCCCchHHHHHHHHHHHC
Q 001763 664 LHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLW---TAVISGHAQNDSNYEALHFYREMRSH 723 (1017)
Q Consensus 664 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 723 (1017)
.....+..+.+.|++++|.+.|+++.. |.+...- -.++.+|.+.+++++|+..|++.++.
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333444555566666666666666544 2222111 23445555566666666666665553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0082 Score=61.43 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=65.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLG 878 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~ 878 (1017)
...+.+.|++++|+..|+++++. .|+. ..+..++.+|...|++++|+..|+.+++.|...|.
T Consensus 150 ~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------------ 215 (263)
T PRK10803 150 IALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------------ 215 (263)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------------
Confidence 33335567888888888888873 4654 35566777777788888888887777764322211
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 879 RWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.+..|..++..+...|+.+.|+..++++++..|++..+
T Consensus 216 -------------------~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 216 -------------------AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -------------------hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 12344445556667788888888888888888865543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.37 Score=49.17 Aligned_cols=216 Identities=18% Similarity=0.154 Sum_probs=144.8
Q ss_pred CcHHHHHHHHHHHHHhCCC-CCcchHhHHHhHHHhcCCHHHHHHHHHhccC----CChhHHHHHHHHHHHhCCCHHHHHH
Q 001763 743 SSLRDGGEIHSLIFHTGYD-LDEITGSALIDMYAKCGDVKRSAQVFDEMAE----RNYVISWNSMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 817 (1017)
+....+...+......... ............+...+++..+...+..... ......+......+...+++.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443332 1346667777888888888888888876642 3333366677777778888888888
Q ss_pred HHHHHHHCCCCCChHhHHHHHH-HcccCCcHHHHHHHHHHhhhhcCCCc----CchhHHHHHHhhhccCCHHHHHHHHHh
Q 001763 818 VFHEMKETQAMPDDVTFLGVLT-ACSHAGRVSEGRQIFETMVSCHGIQP----RVDHCACMVDLLGRWGFLKEAEEFIEQ 892 (1017)
Q Consensus 818 ~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~l~~~g~~~eA~~~~~~ 892 (1017)
.+.........+. ........ ++...|++++|...|+.... ..| ....+......+...++.++|...+.+
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 8888887433321 22222223 67888888888888888744 333 223333344446677888888888877
Q ss_pred C-CCCCC--HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 893 L-TFEPD--SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 893 ~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
. ...++ ...+..+...+...++.+.+...+.++++..|.....+..++..+...|+++++.....+....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 33333 5577777777888888888999999999888876777788888888777788888777666554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.034 Score=52.44 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=117.0
Q ss_pred hHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHH
Q 001763 772 DMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 772 ~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~ 848 (1017)
..|-..|-+.-|+.-|.+... |+....+|-+.--+...|+++.|.+.|+...+ +.|.- .+..+-.-++.-.|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchH
Confidence 345555666666666665543 66665788888888888999999999999988 56644 56666666777889999
Q ss_pred HHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhh
Q 001763 849 EGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 849 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 928 (1017)
-|.+-|.+.-. -.|+...-.-..-+-.+.=+..+|..-+.+--..-|..-|..-+-.+.. |.... +.+++++.+-
T Consensus 151 LAq~d~~~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~ 225 (297)
T COG4785 151 LAQDDLLAFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKISE-ETLMERLKAD 225 (297)
T ss_pred hhHHHHHHHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhccH-HHHHHHHHhh
Confidence 88887776643 3333222111122223444566776554432224455577776644432 22211 2233344333
Q ss_pred CCCC-------CchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 929 EPEN-------PSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 929 ~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
..+| .++|+.|+..|...|+.++|..+++.....++
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 3332 56899999999999999999999987765443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.066 Score=53.02 Aligned_cols=169 Identities=14% Similarity=0.146 Sum_probs=96.9
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--CCh---hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHH
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--RNY---VISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGV 837 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l 837 (1017)
......+..+...|++++|++.|+.+.. |+. ..+...++.++.+.|++++|+..+++.++. .|+. ..+...
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y 83 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHH
Confidence 3444556666677778888887777764 221 135667777888888888888888887773 4543 222211
Q ss_pred HHH-------------cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHH--H
Q 001763 838 LTA-------------CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRI--W 902 (1017)
Q Consensus 838 ~~~-------------~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~--~ 902 (1017)
..+ ....+...+|...|+.+++.|.- .....+|...+..+. +... -
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~----------------S~y~~~A~~~l~~l~---~~la~~e 144 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN----------------SEYAEEAKKRLAELR---NRLAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT----------------STTHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC----------------chHHHHHHHHHHHHH---HHHHHHH
Confidence 111 12233344566666666654432 223333333332221 0000 0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCcHHHHH
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIELEPENP---SPYVQLSNIYAALGNWNEVNT 954 (1017)
Q Consensus 903 ~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~---~~~~~l~~~y~~~g~~~~a~~ 954 (1017)
...+..+.+.|.+..|..-++.+++..|+.+ .+...+...|.+.|..+.|..
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 1234557788999999999999999999753 467888999999999884443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.016 Score=60.64 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
++.+|...|.+.+++..|+....++|+++|+|..+++.-+.+|...|+++.|...++++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4455555566667777777777777777777777777777777777777777777777665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=59.56 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA-CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
+|..++....+.+..+.|-.+|.+.++.+ .-+...|...+.. |...++.+.|..+|+...+.++ .+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence 57777777777777777888888877532 1123445544444 3335566668888888877543 344556667777
Q ss_pred hhccCCHHHHHHHHHhC-C-CCCC---HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc
Q 001763 877 LGRWGFLKEAEEFIEQL-T-FEPD---SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~-~-~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
+.+.|+.+.|..++++. . +.++ ..+|...+..-..+|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 78888888888888774 2 2222 248999999988999999999999999999887443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.027 Score=54.78 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----CCcCchhHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHG----IQPRVDHCACM 873 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 873 (1017)
.-+.++..+.-+|.+.-.+.++++.++....-+......|++.-.+.|+.+.|...|+.+.+.-+ +.-+.-..-++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34677888888889999999999999954333556677888888999999999999998765322 11111222223
Q ss_pred HHhhhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHhhCC
Q 001763 874 VDLLGRWGFLKEAEEFIEQLTF-EPDSRIWTTLLGACG-VHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~~-~p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~l~~~p 930 (1017)
..++.-++++.+|..++.+.+. .|...++.+--..|. -.|+...|++..+.+++..|
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 3344444555555555554432 222222222111111 23555555555555555555
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.032 Score=56.26 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhC-C--CHHHHHHHHHHHHHCC
Q 001763 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKN-G--YAEDALKVFHEMKETQ 826 (1017)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~~g 826 (1017)
++.-+..++. |..-|..|+..|...|++++|...|....+ ++....+..+..++... | ...++..+|++++.
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~-- 221 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA-- 221 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--
Confidence 3444555665 888888888888888888888888887765 33332555555554332 2 45678889999888
Q ss_pred CCCChH-hHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 827 AMPDDV-TFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 827 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
.+|+++ +...|...+...|++.+|...|+.|.+
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 567664 556666778889999999999999887
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0033 Score=50.28 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=51.3
Q ss_pred HhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLS 940 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~ 940 (1017)
.+|.+.+++++|.+.++.+ ...| ++..|...+..+...|+++.|...++++++..|+++......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4567777888888877775 3556 4457878888888999999999999999999998877665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=50.54 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=59.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcC--HHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCC--CcchHhHHHhHHH
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPD--QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDL--DEITGSALIDMYA 775 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~y~ 775 (1017)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+++......+.. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456667888888888888888776544 2456666777777888888888877776654431 2223333445566
Q ss_pred hcCCHHHHHHHHHhcc
Q 001763 776 KCGDVKRSAQVFDEMA 791 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~ 791 (1017)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 6677777776654433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.019 Score=48.32 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCC
Q 001763 225 WTSMIAGYVQAGLPEAAFELFEKMIKVGC-VPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGY 303 (1017)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 303 (1017)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..--..+ -.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~-----------------------ie~k 84 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSED-----------------------IENK 84 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchh-----------------------HHHH
Confidence 34567777778999999999999999999 99999999999987764311111 1123
Q ss_pred chHHHHHHHHHHhcCCCCChhhHHHHHHHHhc
Q 001763 304 DAEAVNYFKRMRKAGVKSSRSTLGSVLSGISS 335 (1017)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 335 (1017)
.-+.+.+|+.|...+++|+..||+.++..+.+
T Consensus 85 l~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 85 LTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 45677889999999999999999999887643
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=49.44 Aligned_cols=80 Identities=9% Similarity=0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHcCCChhhHHHHHHHHHhCCC-CCChhhHHHHHHHhhcCC--------ChhHHHHHHHHHHHhcCCCCcchH
Q 001763 124 WNSILSMYSKRGSFENVFKSFGLLCNRGG-VPNGFTFAIVLSACSKSM--------DVSYGRQLHCHVIELGFESSSFCK 194 (1017)
Q Consensus 124 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 194 (1017)
--..|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34567777778999999999999999999 899999999999987663 245677889999999999999999
Q ss_pred HHHHHHHHc
Q 001763 195 GALIDMYAK 203 (1017)
Q Consensus 195 ~~li~~~~~ 203 (1017)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887755
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1.4 Score=49.37 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA 738 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~ 738 (1017)
|.+....-.+++|+.+.|.-++|.+.|-+...|+. -+..|...+++.+|+++-++.. -|...|+.+-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka------Av~tCv~LnQW~~avelaq~~~----l~qv~tliak--- 915 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA------AVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAK--- 915 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH------HHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHH---
Confidence 46777777888888888988888888776655322 2445666777888887766653 3333332211
Q ss_pred HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE 792 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 792 (1017)
.|-++++ + + . .---|..+.++|+.=+|.+++.+|.+
T Consensus 916 --------~aaqll~---~-~-----~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 916 --------QAAQLLA---D-A-----N-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred --------HHHHHHh---h-c-----c-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1111111 0 0 0 11235677888888888888888865
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.71 Score=47.01 Aligned_cols=229 Identities=17% Similarity=0.118 Sum_probs=154.9
Q ss_pred CchHHHHHHHHHHHCCCC-cCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh-CCCCCcchHhHHHhHHHhcCCHHHHHHH
Q 001763 709 SNYEALHFYREMRSHNVL-PDQATFVSVLRACAVLSSLRDGGEIHSLIFHT-GYDLDEITGSALIDMYAKCGDVKRSAQV 786 (1017)
Q Consensus 709 ~~~~A~~~~~~m~~~~~~-pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~y~~~g~~~~A~~~ 786 (1017)
....+...+......... ............+...+.+..+...+...... ........+..+...+...+++.++.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444555555443211 12455556666677777777777777766652 2223556677778888888888888888
Q ss_pred HHhccC--CChhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC----ChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 787 FDEMAE--RNYVISWNSMIV-GFAKNGYAEDALKVFHEMKETQAMP----DDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 787 ~~~~~~--~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+..... +.....+..... .+...|++++|...+++... ..| ....+......+...++.+++...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 887765 222113333344 78889999999999999866 344 223445555557788899999999999877
Q ss_pred hcCCCcC--chhHHHHHHhhhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 860 CHGIQPR--VDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 860 ~~~~~p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
..|. ...+..+...+...|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 196 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 268 (291)
T COG0457 196 ---LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD---- 268 (291)
T ss_pred ---hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----
Confidence 3333 567778888888899999999988775 34554 456666666665677899999999999999997
Q ss_pred HHHHHHHHHhc
Q 001763 936 YVQLSNIYAAL 946 (1017)
Q Consensus 936 ~~~l~~~y~~~ 946 (1017)
+..++..+...
T Consensus 269 ~~~~~~~~~~~ 279 (291)
T COG0457 269 LYNLGLALLLL 279 (291)
T ss_pred hhhhhHHHHHH
Confidence 44444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.57 E-value=1 Score=47.71 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=81.8
Q ss_pred hhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccc
Q 001763 360 VASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEY 439 (1017)
Q Consensus 360 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 439 (1017)
+.+..|.-+...|+...|.++-.+..-++...|...+.+++..++|++-..+... +-.+..|-.++.+|...|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444566667789999999999888888888999999999999999877765432 2345788888999988888
Q ss_pred hHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHH
Q 001763 440 LEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQF 482 (1017)
Q Consensus 440 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f 482 (1017)
..+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 88887776652 1245677888899988886653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.2 Score=53.30 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=105.3
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccCCC---hh---HHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAERN---YV---ISWNSMIVGFAK---NGYAEDALKVFHEMKETQAMPDDVTFLG 836 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~~~---~~---~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 836 (1017)
+...|.-.|....+++.-+++.+.+.... .. ..-...+-++.+ .|+.++|++++..++...-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33345556778888888888888777631 11 122344556666 7889999999988666555566667766
Q ss_pred HHHHcc---------cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHH----HHHH---H-----hCCC
Q 001763 837 VLTACS---------HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA----EEFI---E-----QLTF 895 (1017)
Q Consensus 837 l~~~~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA----~~~~---~-----~~~~ 895 (1017)
++..|- .....++|+..|.+. +.+.|+.-+=-+++.++..+|...+. .++. . +-..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 665432 234578888888876 44666654444555566666643322 2222 1 1112
Q ss_pred CCCHHHH--HHHHHHHHhcCCchHHHHHHHHHHhhCCC
Q 001763 896 EPDSRIW--TTLLGACGVHRDDIRGRLAAKKLIELEPE 931 (1017)
Q Consensus 896 ~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~l~~~p~ 931 (1017)
.+...-| .+++.++...||.+.|..++++++.+.|+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3444444 57889999999999999999999999875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.025 Score=59.23 Aligned_cols=96 Identities=17% Similarity=0.113 Sum_probs=71.6
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
.+.++.-+|.+.+++.+|++..+++ ..+| |.-...--+.+|...|+++.|+..++++++++|+|-.+..-|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444555566666666666666554 3444 4446666778888999999999999999999999999999999888877
Q ss_pred CCcHHH-HHHHHHHHHcCC
Q 001763 947 GNWNEV-NTLRREMREKGV 964 (1017)
Q Consensus 947 g~~~~a-~~~~~~m~~~~~ 964 (1017)
.++.+. .++|..|-.+-.
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 776655 778888876533
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.018 Score=55.02 Aligned_cols=96 Identities=13% Similarity=0.259 Sum_probs=72.8
Q ss_pred HHhccc--CCCCchhHHHHHHHHH-----cCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcC--------------
Q 001763 111 KVFDRL--EDRDILAWNSILSMYS-----KRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKS-------------- 169 (1017)
Q Consensus 111 ~~f~~~--~~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-------------- 169 (1017)
..|+.. ..+|-.+|..+|..|. +.|+.+-....+..|.+.|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 345544 4566677777777775 3467777777888899999999999999999887653
Q ss_pred --CChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCC
Q 001763 170 --MDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNN 206 (1017)
Q Consensus 170 --~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (1017)
.+.+.|.+++++|...|+-||..++..|++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2356788888899888988888888888888876554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.056 Score=58.22 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHH-CCCCCCh-HhHHHHHHHcc---------cCCcHHHHHHHHHHhhhhcCCCc-CchhHHHHHHhhhc
Q 001763 812 AEDALKVFHEMKE-TQAMPDD-VTFLGVLTACS---------HAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGR 879 (1017)
Q Consensus 812 ~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~ 879 (1017)
.+.|+.+|.+.+. ..++|+. ..|..+..++. ......+|.+.-++.++ +.| |+.....+.-++.-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 3466677777771 1256654 23333322211 12334455555555554 333 33344455555566
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH-HHhcCCcHHHHHHH
Q 001763 880 WGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI-YAALGNWNEVNTLR 956 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~-y~~~g~~~~a~~~~ 956 (1017)
.|+++.|..++++. .+.||.. +|...+..+.-.|+.++|....+++++++|....+-+.--++ .+-....++|.+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 66677777777765 4677654 777777777778888888888888888888777666655555 33344557777776
Q ss_pred H
Q 001763 957 R 957 (1017)
Q Consensus 957 ~ 957 (1017)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0055 Score=49.76 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhh----C---CCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIEL----E---PENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~----~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++..++..+...|++++|+..+++++++ . |+-...+..+|++|...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555566666666666666666666654 1 1124457777777777777777777766544
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.047 Score=59.32 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=83.8
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC-CC-----ccchHHHHHHHhccCCchHHHHHHHHHHhcCCCCChhh
Q 001763 252 GCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN-PN-----VVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRST 325 (1017)
Q Consensus 252 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 325 (1017)
+.+.+......+++.+....+++.+..++-+... |+ ..|..++|+.|.+.|..++++.++..=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455677777778887777778887777766653 22 23456778888888888888888887777788888888
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHcc
Q 001763 326 LGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKC 371 (1017)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 371 (1017)
++.++..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8877777777777777777777777766655555554444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.12 Score=51.24 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCAC 872 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ 872 (1017)
.+...+..+...|++++|++.|+++... -|+. .....++.++...|++++|+..|+..++.|+-.|... .+-.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4566777888999999999999999985 3432 3566788889999999999999999998776666543 2221
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC-----------------ch
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP-----------------SP 935 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~-----------------~~ 935 (1017)
++..+... ....+ ...+.++....|...++.+++..|+++ .-
T Consensus 85 ~g~~~~~~-----~~~~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 85 LGLSYYKQ-----IPGIL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHH-----HHHHH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----Cccch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 22111100 00000 001122333444455555555555432 23
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
-...+..|.+.|+|..|..-++.+.+.
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455688999999999999988877753
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.046 Score=46.99 Aligned_cols=89 Identities=22% Similarity=0.231 Sum_probs=55.1
Q ss_pred hhhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCCc
Q 001763 876 LLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN----PSPYVQLSNIYAALGNW 949 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~----~~~~~~l~~~y~~~g~~ 949 (1017)
++...|++++|++.|.+. .+-| .+..|++-..+++.+|+.+.|..-+++++++.-+. -.+|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666553 2222 45566666677777777777777777777764322 23466667777777777
Q ss_pred HHHHHHHHHHHHcCC
Q 001763 950 NEVNTLRREMREKGV 964 (1017)
Q Consensus 950 ~~a~~~~~~m~~~~~ 964 (1017)
++|..-++..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 777776666666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.075 Score=49.49 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=70.0
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCc--CchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQP--RVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRG 918 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 918 (1017)
....|+.+++.+.++++...|.-++ +... ..-.....+.+++.- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3456677777777777776553221 2111 011111122222210 12455667778889999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 919 RLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 919 ~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
+..+++++..+|.+-..|..|..+|...|+..+|.+.++++..
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.057 Score=56.46 Aligned_cols=126 Identities=14% Similarity=0.125 Sum_probs=53.3
Q ss_pred ehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHH-HhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHH
Q 001763 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRA-CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYA 775 (1017)
Q Consensus 697 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~ 775 (1017)
|-.++....+.+..+.|-.+|.+..+.+ ..+...|...... +...++.+.|..+|+..++.-+. +...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 4444444444444555555555554321 1112222222222 22234444455555555444322 4444555555555
Q ss_pred hcCCHHHHHHHHHhccCC---C--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 776 KCGDVKRSAQVFDEMAER---N--YVISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+.|+.+.|+.+|++.... . ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555544431 0 112455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.052 Score=58.43 Aligned_cols=120 Identities=10% Similarity=0.035 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhhhcCCCcCc-hhHHHHHHhhh---------ccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 001763 847 VSEGRQIFETMVSCHGIQPRV-DHCACMVDLLG---------RWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRD 914 (1017)
Q Consensus 847 ~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~l~---------~~g~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 914 (1017)
.+.|..+|.+.+..-.+.|+. ..|..+..++. ......+|.++.++. .+.| |+.+...++.+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467888999988434477764 45555543321 233456677777664 4555 66677777777777888
Q ss_pred chHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCcc
Q 001763 915 DIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKK 966 (1017)
Q Consensus 915 ~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 966 (1017)
++.|...+++++.++|+.+.+++..|++.+-.|+.++|.+..++..+....+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999999999999999999999999888755544433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.017 Score=46.77 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=26.3
Q ss_pred hHhHHHhHHHhcCCHHHHHHHHHhccC---------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001763 766 TGSALIDMYAKCGDVKRSAQVFDEMAE---------RNYVISWNSMIVGFAKNGYAEDALKVFHEMK 823 (1017)
Q Consensus 766 ~~~~l~~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 823 (1017)
+++.++.+|...|++++|+..|++... ++...+++.++..|...|++++|++.+++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555543321 0111234445555555555555555554443
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.83 E-value=3.3 Score=44.38 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=59.5
Q ss_pred HHHHHHHHHHCCCCCChH----hHHHHHHH--cccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHH
Q 001763 815 ALKVFHEMKETQAMPDDV----TFLGVLTA--CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEE 888 (1017)
Q Consensus 815 A~~~~~~m~~~g~~p~~~----~~~~l~~~--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~ 888 (1017)
-+.+-+-+.+.|+.|-.+ .-+.|..| ....|++.++.-.-..+.+ +.|++.+|.-++-.+....+++||.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444445667776332 22333333 4568999998877666665 89999999999988999999999999
Q ss_pred HHHhCCCCCCHHHHHH
Q 001763 889 FIEQLTFEPDSRIWTT 904 (1017)
Q Consensus 889 ~~~~~~~~p~~~~~~~ 904 (1017)
++.++| |+..+|.+
T Consensus 517 ~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 517 YLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhCC--CchhhHHH
Confidence 999977 35555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.08 Score=50.74 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=58.1
Q ss_pred CCccchHHHHHHHh-----ccCCchHHHHHHHHHHhcCCCCChhhHHHHHHHHhcc----------------cchhHHHH
Q 001763 286 PNVVAWNVMISGHA-----KRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISSL----------------AALDFGLI 344 (1017)
Q Consensus 286 ~~~~~~~~li~~~~-----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 344 (1017)
.|-.+|..++..|. +.|..+-....+..|.+-|+.-|..+|+.||..+-+. .+-+-|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 33344444444443 3466666666677777777777777777777665432 23456788
Q ss_pred HHHHHHHhCCCCchhhhHHHHHHHHccCC
Q 001763 345 VHAEAIKQGLYSNVYVASSLINMYAKCEK 373 (1017)
Q Consensus 345 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 373 (1017)
++++|...|+-||..++..|++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888865543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.31 Score=52.71 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=58.4
Q ss_pred HHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCC-C-CCCHH--HHHHHHHHHHh
Q 001763 836 GVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLT-F-EPDSR--IWTTLLGACGV 911 (1017)
Q Consensus 836 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~-~p~~~--~~~~ll~~~~~ 911 (1017)
.|..++.+.|+.+||++.|+.|.+++...-+......++..|...+++.|+..++.+-. + -|.+. .|+..+-..+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 34555556777777777777776644322233345567777777777777777776653 1 24444 34433323332
Q ss_pred cCC---------------chHHHHHHHHHHhhCCCCCch
Q 001763 912 HRD---------------DIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 912 ~g~---------------~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
-+| ...|.++.+++++.+|.-+..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 232 123668899999999965543
|
The molecular function of this protein is uncertain. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.3 Score=47.77 Aligned_cols=127 Identities=10% Similarity=0.058 Sum_probs=63.2
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcch-----HhHHHh
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEIT-----GSALID 772 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~ 772 (1017)
+.++..+.-.|++.-.+.++++.++...+.+..-...+.+.-.+.||.+.|...++.+.+..-..+... .-....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444555555555566666665543333444455555555666666666666665543322222222 222233
Q ss_pred HHHhcCCHHHHHHHHHhccCCChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 773 MYAKCGDVKRSAQVFDEMAERNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 773 ~y~~~g~~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
.|.-+.++.+|...|+++...|.. ..-|+-+-+..-.|+..+|++..+.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444455555555555555542221 1334434444445566666666666655
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.0066 Score=53.02 Aligned_cols=26 Identities=50% Similarity=0.995 Sum_probs=21.5
Q ss_pred CceeEEEECCEEEEEecCCCCCCChHHHHH
Q 001763 968 PGCSWIVLGQNTNFFVAGDTSHPNADRICA 997 (1017)
Q Consensus 968 ~g~s~i~~~~~~~~f~~~d~~~~~~~~~~~ 997 (1017)
.||||+++ |.|++||++||+...+++
T Consensus 1 ~~~~w~~~----h~F~sgd~shp~~~~~~~ 26 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRSHPQSELINK 26 (116)
T ss_pred CCCCccce----EEEEeCCCcCccHHHHHH
Confidence 38999987 999999999999944443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.041 Score=59.13 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=34.9
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChh---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYV---ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+...++.++.+|.+.|++++|+..|++..+ |+.. .+|+++..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555566666666666666666665443 3222 1356666666666666666666666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.17 Score=45.37 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=52.1
Q ss_pred hhhccCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcC
Q 001763 876 LLGRWGFLKEAEEFIEQL----TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS---PYVQLSNIYAALG 947 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~---~~~~l~~~y~~~g 947 (1017)
...+.|++++|.+.++.+ |..| ....-..|+.++...++++.|...+++.++++|.++. +++..|-++....
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345667777777777665 3333 2335666788899999999999999999999997654 4666666666665
Q ss_pred C
Q 001763 948 N 948 (1017)
Q Consensus 948 ~ 948 (1017)
.
T Consensus 99 ~ 99 (142)
T PF13512_consen 99 E 99 (142)
T ss_pred h
Confidence 4
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.3 Score=50.12 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=137.7
Q ss_pred ccCCCchHHHHHHHHHHHCC--CCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh--CCC---CCcchHhHHHhHHHhc
Q 001763 705 AQNDSNYEALHFYREMRSHN--VLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT--GYD---LDEITGSALIDMYAKC 777 (1017)
Q Consensus 705 ~~~g~~~~A~~~~~~m~~~~--~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~y~~~ 777 (1017)
.+..+.++|+..+.+-+.+- ..-...++..+..+.+..|.++++...--..+.. ..+ .--+.|..+...+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666654420 0111244555666677777777665543222111 111 1123455666777777
Q ss_pred CCHHHHHHHHHhccC-CChh------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-Ch----HhHHHHHHHcccCC
Q 001763 778 GDVKRSAQVFDEMAE-RNYV------ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DD----VTFLGVLTACSHAG 845 (1017)
Q Consensus 778 g~~~~A~~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~----~~~~~l~~~~~~~g 845 (1017)
-++.+++.+-+.-.. |+.. ...-+|..++.-.+.++++++.|+....-.-.. |. ..+++|...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 777777777653332 2221 133457777777788999999999987732111 22 36888999999999
Q ss_pred cHHHHHHHHHHhhh---hcCCCcCchhHHH-----HHHhhhccCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHH
Q 001763 846 RVSEGRQIFETMVS---CHGIQPRVDHCAC-----MVDLLGRWGFLKEAEEFIEQL-------TFEPD-SRIWTTLLGAC 909 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~---~~~~~p~~~~~~~-----l~~~l~~~g~~~eA~~~~~~~-------~~~p~-~~~~~~ll~~~ 909 (1017)
++++|..+..+..+ .+++..-...|.+ |..+|...|++-+|.+..++. ..+|- ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998877666533 2454444444544 445677788887777776552 22221 22456678899
Q ss_pred HhcCCchHHHHHHHHHHhh
Q 001763 910 GVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~ 928 (1017)
+..||.|.|-.-|+++...
T Consensus 257 R~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HhcccHhHHHHHHHHHHHH
Confidence 9999999999999998765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.15 Score=47.54 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHcccCCcHHHHHHHHHHhhh----hcCCCcCchhH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD-DVTFLGVLTACSHAGRVSEGRQIFETMVS----CHGIQPRVDHC 870 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 870 (1017)
....++..+...|++++|+.+.++++. ..|- ...+..++.+|...|+..+|++.|+++.. +.|+.|+.++-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 556778888899999999999999999 5674 47889999999999999999999998854 46788876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.025 Score=36.82 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888889999999999999999999864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.65 Score=46.90 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=30.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHh
Q 001763 803 IVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETM 857 (1017)
Q Consensus 803 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 857 (1017)
.......|++.+|..+|...++. .|+. ..-..++.+|...|++++|..++..+
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 33445566666777777666663 3333 34455556666666666666666554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=2.7 Score=41.89 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=96.5
Q ss_pred HhHHHhcCCHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCh--HhHHHHHHHcc
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPDD--VTFLGVLTACS 842 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~l~~~~~ 842 (1017)
+..-...|++++|.+.|+.+....+. .+--.++-++.+.+++++|+...++.+.. +-.||. +.|...+.-+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 33344567777777777777653222 12334556677778888888888877773 222332 22332222222
Q ss_pred cC----CcHH---HHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC
Q 001763 843 HA----GRVS---EGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIW--TTLLGACGVHR 913 (1017)
Q Consensus 843 ~~----g~~~---~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~--~~ll~~~~~~g 913 (1017)
.. .+.. +|..-|+.++.+| |+.+ -..+|..-+..+. |.... .+.+.-|.+.|
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRG 181 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 11 1222 3333333333322 2211 1112221111110 00111 12345577889
Q ss_pred CchHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 914 DDIRGRLAAKKLIELEPENP---SPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.+..|..-++.+++.-|+-+ .++..+-.+|...|-.++|.+..+.+...-
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 99999999999999877554 456677788999999999999988877653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.19 Score=46.25 Aligned_cols=87 Identities=11% Similarity=0.091 Sum_probs=63.9
Q ss_pred cccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHH
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A 783 (1017)
+.+.|++++|..+|+-+...+ .-+..-|..|..+|-..+++++|...+......+.. |+......+..|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 455667777777776665532 123334566667777788899999888888777664 777788889999999999999
Q ss_pred HHHHHhccC
Q 001763 784 AQVFDEMAE 792 (1017)
Q Consensus 784 ~~~~~~~~~ 792 (1017)
+..|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999887765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.041 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
..|..++..+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 367778888888899999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.9 Score=48.29 Aligned_cols=30 Identities=13% Similarity=-0.055 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhhCC
Q 001763 660 DDDFLHIALLSMYMNSKRNTDARLLFTEFP 689 (1017)
Q Consensus 660 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 689 (1017)
|.+..+..|++.-...-.++.|+..|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 566666666666666556666665554443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=44.43 Aligned_cols=119 Identities=9% Similarity=0.125 Sum_probs=81.6
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHH---HHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNS---MIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~ 813 (1017)
......|+..++...+..+....++ +..+...|+..|...|+.+.|..++..++.......|.. -+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999999888776 577888899999999999999999999887433322322 233333333333
Q ss_pred HHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 814 DALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+...+-.+.-. .||. ..-..+...+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333333 5744 4556677778888888888877766655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.19 E-value=8.4 Score=44.83 Aligned_cols=176 Identities=12% Similarity=0.055 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCchhHHHHhcccCCCCchhHH---HHHHHHHcCCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCCC
Q 001763 95 AIVDLYAKCGIANLAEKVFDRLEDRDILAWN---SILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMD 171 (1017)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 171 (1017)
.-|+++.+-.-++.|..+-..-..+....-+ ....-+.+.|++++|...|-+-... +.| +.+++-+-....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 4466666666777777766554332222111 2234456789999998887665432 122 234455555556
Q ss_pred hhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcc-hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 001763 172 VSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTV-SWTSMIAGYVQAGLPEAAFELFEKMIK 250 (1017)
Q Consensus 172 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 250 (1017)
...-...++.+.+.|+. +...-+.|+..|.|.++.+.-.+..+....-... -....+..+.+.+-.++|..+-.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 66666777788888865 3445577999999999999998888776522111 255677777777777777766555432
Q ss_pred cCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCC
Q 001763 251 VGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQN 285 (1017)
Q Consensus 251 ~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 285 (1017)
.... +--.+-..+++++|++.+..++-
T Consensus 492 -----he~v---l~ille~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 492 -----HEWV---LDILLEDLHNYEEALRYISSLPI 518 (933)
T ss_pred -----CHHH---HHHHHHHhcCHHHHHHHHhcCCH
Confidence 2222 22234456889999999998874
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.25 Score=53.42 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=109.8
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHH
Q 001763 808 KNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
+..+.++-+++-++.++ +.||-.+...++ +-..+.-..|+.++|++..+. | ...+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccchh---
Confidence 34556677777788888 678875433333 345567789999999998761 1 0000000 0000111111
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 888 EFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPE--NPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 888 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
+.+.+-..+|-..+=..|.-.+++.|..++|++.++.+++..|. +-.++.+|...|...+++.|+..+..+-.+....
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111222223344556678889999999999999988874 5678999999999999999999998877554333
Q ss_pred cCCceeEE----EECCEEEEEecCCCCCCC-------hHHHHHHHHHHHHHHHhcCccCC
Q 001763 966 KFPGCSWI----VLGQNTNFFVAGDTSHPN-------ADRICAVLEDLTASMEKESYFPE 1014 (1017)
Q Consensus 966 ~~~g~s~i----~~~~~~~~f~~~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~ 1014 (1017)
|-...+|- ... .++|+--|+ +......++-+.+-++..-+||+
T Consensus 328 kSAti~YTaALLkaR------av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 328 KSATICYTAALLKAR------AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred chHHHHHHHHHHHHH------hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 32221111 111 123333332 22334467778888887778774
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.18 Score=43.48 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=64.7
Q ss_pred HhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCh--HhHHHHHHHcccCC
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKET-QAMPDD--VTFLGVLTACSHAG 845 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~~~~~l~~~~~~~g 845 (1017)
+-+++..|+++.|++.|.+... |.....||.-..++.-+|+.++|++-+++.++. |-+... ..|+.-...|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3456778888888888887665 333348888888888889999999888888874 222111 34566666688888
Q ss_pred cHHHHHHHHHHhhh
Q 001763 846 RVSEGRQIFETMVS 859 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~ 859 (1017)
+.+.|..-|+...+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88888888888765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.94 E-value=9.8 Score=44.31 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=69.7
Q ss_pred HHHHHHccCChhHHHHHHhhcCCCCcc---hHHHHHHHHHhCCChhHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccch
Q 001763 364 LINMYAKCEKMESAKKVFDSLDERNAV---LWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYL 440 (1017)
Q Consensus 364 li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 440 (1017)
-+++.++...++.|..+-+.-...... ....-.+-+.+.|++++|...|-+-... +.|. .++.-+-.....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHH
Confidence 455556666666666665543322111 1222334456788899988887765432 2232 234444444455
Q ss_pred HhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcC
Q 001763 441 EMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQ 486 (1017)
Q Consensus 441 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 486 (1017)
..-...++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555667777777764 33445778899999999988888777655
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.71 Score=47.49 Aligned_cols=217 Identities=9% Similarity=0.004 Sum_probs=139.5
Q ss_pred ccCcHHHHHHHHHHHHHh--CCCCCcchHhHHHhHHHhcCCHHHHHHHHH----hccC-CChh---HHHHHHHHHHHhCC
Q 001763 741 VLSSLRDGGEIHSLIFHT--GYDLDEITGSALIDMYAKCGDVKRSAQVFD----EMAE-RNYV---ISWNSMIVGFAKNG 810 (1017)
Q Consensus 741 ~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~----~~~~-~~~~---~~~~~l~~~~~~~g 810 (1017)
+..+.+++...+...+.. +......++..+.++.++.|.++++...-- ...+ .+.. .+|..+..++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677666655422 111234567788899999999888765532 1122 1111 35667777777777
Q ss_pred CHHHHHHHHHHHHHC-CCCCCh---HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCC--Cc--CchhHHHHHHhhhccCC
Q 001763 811 YAEDALKVFHEMKET-QAMPDD---VTFLGVLTACSHAGRVSEGRQIFETMVSCHGI--QP--RVDHCACMVDLLGRWGF 882 (1017)
Q Consensus 811 ~~~~A~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~l~~~l~~~g~ 882 (1017)
++.+++..-+.-+.. |..|-. .....+.+++...+.++++++.|+...+--.. .| ....|..+..+|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 777777776665552 333311 23455777778888899999999998762111 22 24468888999999999
Q ss_pred HHHHHHHHHh-------CCCCCCHHHH-----HHHHHHHHhcCCchHHHHHHHHHHhhC--CCC----CchHHHHHHHHH
Q 001763 883 LKEAEEFIEQ-------LTFEPDSRIW-----TTLLGACGVHRDDIRGRLAAKKLIELE--PEN----PSPYVQLSNIYA 944 (1017)
Q Consensus 883 ~~eA~~~~~~-------~~~~p~~~~~-----~~ll~~~~~~g~~~~a~~~~~~~l~~~--p~~----~~~~~~l~~~y~ 944 (1017)
+++|.-+..+ ..+..-..-| ..+.-+++..|..-.|.+..+.+.++. ..| +-....+++||.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9988866543 3322222222 334567889999988888888887663 223 334567899999
Q ss_pred hcCCcHHHHHHHH
Q 001763 945 ALGNWNEVNTLRR 957 (1017)
Q Consensus 945 ~~g~~~~a~~~~~ 957 (1017)
..|+.+.|-.-++
T Consensus 258 ~~gd~e~af~rYe 270 (518)
T KOG1941|consen 258 SRGDLERAFRRYE 270 (518)
T ss_pred hcccHhHHHHHHH
Confidence 9999888754443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=10 Score=43.53 Aligned_cols=123 Identities=12% Similarity=0.027 Sum_probs=63.0
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchh---HHHhhhcCCC--CCcchHHHHHHHHHHc
Q 001763 161 IVLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSD---ARRVFDGAVD--LDTVSWTSMIAGYVQA 235 (1017)
Q Consensus 161 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~~~~--~~~~~~~~li~~~~~~ 235 (1017)
.+|.-+...+.+..|.++-..+-..-.+. .+++.....-+.+..+..+ +.++-++... ...++|..+..--...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 34555566667777777665543321112 5666666666666533322 2222223333 4566777777777778
Q ss_pred CChhHHHHHHHHHHHcC----CCCChhhHHHHHHHHhccCCHHHHHHHHHhcC
Q 001763 236 GLPEAAFELFEKMIKVG----CVPDQVAFVTVINVCFNLGRLDEARELFAQMQ 284 (1017)
Q Consensus 236 g~~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 284 (1017)
|+++-|..+++.=...+ +-.+..-+..-+.-+.+.|+.+....++-.+.
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 88888877765311111 00111223333444455555555555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.27 Score=49.23 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=68.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCc-hhHHHHHHh
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRV-DHCACMVDL 876 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~ 876 (1017)
..-.+.+.|++.+|...|...++.. |+. ..+.-|+.++...|++++|..+|..+.++|+-.|.. +.+-.++..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3344556788999999999998853 433 245558888999999999999999999888777754 777777788
Q ss_pred hhccCCHHHHHHHHHhC
Q 001763 877 LGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~ 893 (1017)
+.+.|+.++|...++++
T Consensus 225 ~~~l~~~d~A~atl~qv 241 (262)
T COG1729 225 LGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 88888888888777765
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.2 Score=50.14 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=60.4
Q ss_pred ccCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCCcH
Q 001763 879 RWGFLKEAEEFIEQL-TFEP----DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPEN---PSPYVQLSNIYAALGNWN 950 (1017)
Q Consensus 879 ~~g~~~eA~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~---~~~~~~l~~~y~~~g~~~ 950 (1017)
..|++.+|+..|... ..-| .+..+..|+..+..+|+++.|...|..+.+-.|+. |++++-|+.+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 455566666555432 1111 12245557888888999999999999998887754 577999999999999999
Q ss_pred HHHHHHHHHHHc
Q 001763 951 EVNTLRREMREK 962 (1017)
Q Consensus 951 ~a~~~~~~m~~~ 962 (1017)
+|..+++++.++
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 999988877654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.29 Score=43.92 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=44.6
Q ss_pred HhHHHhHHHhcCCHHHHHHHHHhccCCChh-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHH
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEMAERNYV-----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLT 839 (1017)
Q Consensus 767 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~ 839 (1017)
+..-+....+.|++++|++.|+.+..+-+. .+--.++.+|.+.|++++|+..+++.++ +.|++ +-|.....
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHH
Confidence 333444455667777777777777653221 2345677778888888888888888887 45544 34444444
Q ss_pred H
Q 001763 840 A 840 (1017)
Q Consensus 840 ~ 840 (1017)
+
T Consensus 91 g 91 (142)
T PF13512_consen 91 G 91 (142)
T ss_pred H
Confidence 3
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.47 Score=48.22 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=102.7
Q ss_pred cCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchH----hHHHhHHHhcCCHH
Q 001763 706 QNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITG----SALIDMYAKCGDVK 781 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~y~~~g~~~ 781 (1017)
..|+..+|-..++++++. ++.|..++...=.+|.-.|+.+.-+..+++++.. ..+|...| ..+.-.+..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 357777787788888775 4667777777778888888888888888887754 11233333 34455566889999
Q ss_pred HHHHHHHhccCCChhHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHcccCCcHHHHHHHHH
Q 001763 782 RSAQVFDEMAERNYVISWN--SMIVGFAKNGYAEDALKVFHEMKETQAMPD----DVTFLGVLTACSHAGRVSEGRQIFE 855 (1017)
Q Consensus 782 ~A~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 855 (1017)
+|++.-++..+-|...+|. +....+...|+..++.+...+-... .+-. ...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999888755554664 6777788889999998876654331 2211 1123334445667789999999998
Q ss_pred Hhh
Q 001763 856 TMV 858 (1017)
Q Consensus 856 ~m~ 858 (1017)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.18 E-value=6.8 Score=47.44 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=75.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCC
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD 779 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~ 779 (1017)
++-+-..+.++.|-+-+++++... .++..-|. |+ ...++++.|..-+..+ | ...+.-..+.--+.|-
T Consensus 857 l~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~---~----~~~~~e~~n~I~kh~L 923 (1265)
T KOG1920|consen 857 LLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSEC---G----ETYFPECKNYIKKHGL 923 (1265)
T ss_pred HHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHc---C----ccccHHHHHHHHhccc
Confidence 445555667788888777777632 22211110 00 1123333333322221 1 1222333333344445
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhh
Q 001763 780 VKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 780 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 859 (1017)
+.+|..++..-.++-.. .|...+.-+...+.+++|.-+|+..-+. ---+.+|..+|+|.+|..+-.++..
T Consensus 924 y~~aL~ly~~~~e~~k~-i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 924 YDEALALYKPDSEKQKV-IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred chhhhheeccCHHHHHH-HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC
Confidence 55555444332222222 3444444444555555555555443220 1124455566666666665555432
Q ss_pred hcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 860 CHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
+-.--..+-..|+.-+..+++.-||-++....
T Consensus 994 --~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 994 --GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred --CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 11111122345555566666666666555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=6 Score=46.07 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=135.3
Q ss_pred cCCCchHHHHHHHHHHH-------CCCCcCHHhHHHHHHHHhccC-----cHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 706 QNDSNYEALHFYREMRS-------HNVLPDQATFVSVLRACAVLS-----SLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~-------~~~~pd~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
...+.+.|+.+|+.+.+ .|.. .....+..+|.+.. +.+.|..++....+.|. +.....|+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~---~~a~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN---PDAQYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC---chHHHHHHHH
Confidence 34455566666655544 3311 22333444444322 45556666666666553 2344444444
Q ss_pred HHhcC---CHHHHHHHHHhccCCChhHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCc
Q 001763 774 YAKCG---DVKRSAQVFDEMAERNYVISWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGR 846 (1017)
Q Consensus 774 y~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 846 (1017)
|..-. +...|.+.|......+.+.+...+..+|.. ..+.+.|..++++.-+.| .|-...-...+..+.. +.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 44333 456777777777766655454444444432 236677788888777766 4443333344444444 67
Q ss_pred HHHHHHHHHHhhhhcCCCcCchhHHHHH-----Hhhhc--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCc
Q 001763 847 VSEGRQIFETMVSCHGIQPRVDHCACMV-----DLLGR--WGFLKEAEEFIEQLTFEPDSRIWTTLLGACGV----HRDD 915 (1017)
Q Consensus 847 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~-----~~l~~--~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~ 915 (1017)
++.+.-.+..+.+ .|.+-....-..+. ++..+ ..+.+.+..++.+....-+......|...+.. ..+.
T Consensus 413 ~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 413 YDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred ccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCCh
Confidence 7766666666655 33322111111111 11111 23556666666666555555556656555432 2367
Q ss_pred hHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--CcHHHHHHHHHHHHcC
Q 001763 916 IRGRLAAKKLIELEPENPSPYVQLSNIYAAL-G--NWNEVNTLRREMREKG 963 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~-g--~~~~a~~~~~~m~~~~ 963 (1017)
+.|...+.++-+.. +....+|+++|..- | ++..|.+.+.+..+.+
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 88888888887776 78888888888743 1 2677888877776643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.4 Score=41.66 Aligned_cols=115 Identities=10% Similarity=0.055 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHCCCCCCh-Hh--HHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH-----HHhhhccCCHHH
Q 001763 814 DALKVFHEMKETQAMPDD-VT--FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM-----VDLLGRWGFLKE 885 (1017)
Q Consensus 814 ~A~~~~~~m~~~g~~p~~-~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----~~~l~~~g~~~e 885 (1017)
+.....+++...+-. +. .+ -..+...+..+|++++|...++..+. .|..+.+..+ ..++...|++|+
T Consensus 70 ~~~~~~ekf~~~n~~-t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~ 144 (207)
T COG2976 70 KSIAAAEKFVQANGK-TIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADA 144 (207)
T ss_pred hhHHHHHHHHhhccc-cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 555556666663211 22 22 24456678889999999999888765 3444555444 456788999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCC
Q 001763 886 AEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENP 933 (1017)
Q Consensus 886 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~ 933 (1017)
|++.++...-+. .+..-..-+.++...||-+.|+..|+++++.+++++
T Consensus 145 AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 145 ALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 999998754221 222233345778899999999999999999986443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=3.9 Score=40.76 Aligned_cols=70 Identities=9% Similarity=0.003 Sum_probs=37.9
Q ss_pred cccCCCchHHHHHHHHHHHCCC-Cc-CHHhHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhH
Q 001763 704 HAQNDSNYEALHFYREMRSHNV-LP-DQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~-~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
-.+.|++++|.+.|+.+..... .| ...+...++-+..+.+++++|....++.++..+.....-|..-+.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg 115 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG 115 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence 4455666666666666654321 11 2344555556666666777777666666666554333333333333
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.86 E-value=1.8 Score=39.74 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=39.6
Q ss_pred HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhcc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001763 832 VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRW-GFLKEAEEFIEQLTFEPDSRIWTTLLGACG 910 (1017)
Q Consensus 832 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~-g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~ 910 (1017)
......+..|.+.+.++++..++.++.. +...++.+... ++.+.|.+++.+. .++..|..++..|.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344456667777777777777666532 22233333333 7778888887762 35667887776664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.7 Score=49.19 Aligned_cols=158 Identities=11% Similarity=0.079 Sum_probs=97.0
Q ss_pred hhhhcccCCCchHHHHHHHHHHHCC-CCcCH-----HhHHHHHHH-Hhc---cCcHHHHHHHHHHHHHhCCCCCcchHhH
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHN-VLPDQ-----ATFVSVLRA-CAV---LSSLRDGGEIHSLIFHTGYDLDEITGSA 769 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~-~~pd~-----~t~~~ll~~-~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 769 (1017)
++....-.|+-+.+++++.+..+.+ +.-.. .+|..++.. +.. ..+.+.+.+++..+.+.-|+ ......-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~-s~lfl~~ 272 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN-SALFLFF 272 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC-cHHHHHH
Confidence 3344444566677777666654422 11111 122233332 222 45778888888888877664 4444445
Q ss_pred HHhHHHhcCCHHHHHHHHHhccCCCh-----h-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH-cc
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNY-----V-ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTA-CS 842 (1017)
Q Consensus 770 l~~~y~~~g~~~~A~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~ 842 (1017)
-+.++...|++++|++.|++...... . ..+..++-.+....++++|.+.|.++.+.+-- ....|..+..+ +.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 56778888999999999997553111 1 24556677788889999999999999885311 23444444443 35
Q ss_pred cCCcH-------HHHHHHHHHhhh
Q 001763 843 HAGRV-------SEGRQIFETMVS 859 (1017)
Q Consensus 843 ~~g~~-------~~a~~~~~~m~~ 859 (1017)
..|+. ++|.++|.++-.
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 67777 778888777644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.83 E-value=16 Score=42.15 Aligned_cols=98 Identities=20% Similarity=0.231 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCCcHHHHHHHH
Q 001763 775 AKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIF 854 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 854 (1017)
..-|+..+|.++-.+.+-++-. .|---+.+++..+++++-+++-+.+.. .+-|.....+|.+.|+.+||.+++
T Consensus 695 i~~g~~k~a~ql~~~FkipdKr-~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 695 ILIGQNKRAEQLKSDFKIPDKR-LWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred HHccchHHHHHHHHhcCCcchh-hHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 3345555555555555555544 444444555555555544444333211 233444445555555555555554
Q ss_pred HHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHH
Q 001763 855 ETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEF 889 (1017)
Q Consensus 855 ~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~ 889 (1017)
-++.. +.-.+++|.+.|.+.||.++
T Consensus 768 prv~~----------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 768 PRVGG----------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hccCC----------hHHHHHHHHHhccHHHHHHH
Confidence 44321 11344555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.12 Score=48.29 Aligned_cols=89 Identities=12% Similarity=0.087 Sum_probs=45.3
Q ss_pred cccCCcHHHHHHHHHHhhhhcCCCcC---chhHHHHHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchH
Q 001763 841 CSHAGRVSEGRQIFETMVSCHGIQPR---VDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIR 917 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 917 (1017)
+...|++++|..-|...++...-.|. ...|.+-..++.+.+++ +.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~--------------------------------e~ 152 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW--------------------------------ES 152 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH--------------------------------HH
Confidence 55678888888888877762211111 11233334444444444 44
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 961 (1017)
|+...-++|+++|.+-.++..-+.+|.+..++++|++-++++.+
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44444455555554444444444555555555555554444444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.60 E-value=8 Score=38.01 Aligned_cols=204 Identities=11% Similarity=0.078 Sum_probs=96.8
Q ss_pred CCcCHH----hHHHHHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-CChhHHH
Q 001763 725 VLPDQA----TFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-RNYVISW 799 (1017)
Q Consensus 725 ~~pd~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-~~~~~~~ 799 (1017)
++||.. .|.....++...+++++|...+.+..+..-. +.. +. -....++.|.-+.+++.+ +..+..+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn-nrs-lf------hAAKayEqaamLake~~klsEvvdl~ 94 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN-NRS-LF------HAAKAYEQAAMLAKELSKLSEVVDLY 94 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-ccc-HH------HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456643 2444455677777888888776665532111 111 11 112233444444444444 2222344
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcC----CCcCchhHHHH
Q 001763 800 NSMIVGFAKNGYAEDALKVFHEMKE--TQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHG----IQPRVDHCACM 873 (1017)
Q Consensus 800 ~~l~~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 873 (1017)
+--...|..+|..+-|-..+++.-+ .+++||. |+++|++...... ..-..+.|+..
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~------------------AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKALENVKPDD------------------ALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHH------------------HHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 5556667777776665555554332 1244443 3333333322111 11113334555
Q ss_pred HHhhhccCCHHHHHHHHHhCC-----CCCCHHHHHHHH---HHHHhcCCchHHHHHHHHHHhh----CCCCCchHHHHHH
Q 001763 874 VDLLGRWGFLKEAEEFIEQLT-----FEPDSRIWTTLL---GACGVHRDDIRGRLAAKKLIEL----EPENPSPYVQLSN 941 (1017)
Q Consensus 874 ~~~l~~~g~~~eA~~~~~~~~-----~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~l~~----~p~~~~~~~~l~~ 941 (1017)
..+|.|..+++||-..+.+-. +..-+..+...+ -.+.-..|+..|+..++.--++ .|++..+.-+|..
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 567777777777776665532 111111222222 2222335666777766665443 3445555555554
Q ss_pred HHHhcCCcHHHHHH
Q 001763 942 IYAALGNWNEVNTL 955 (1017)
Q Consensus 942 ~y~~~g~~~~a~~~ 955 (1017)
.| ..|+-+++.++
T Consensus 237 ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKV 249 (308)
T ss_pred Hh-ccCCHHHHHHH
Confidence 44 34555555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.34 E-value=13 Score=39.85 Aligned_cols=111 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHhccCCCccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhh
Q 001763 609 DAVVLYRGMQTEG-LSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTE 687 (1017)
Q Consensus 609 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 687 (1017)
.|..+|-+..+.| +.++...+.+.+.-++ .|+...|-.+++.-+..- |+++.........+.+-++-+.|+.+|+.
T Consensus 415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4444444444444 3334444444443322 244444444544433332 24444445556666777777777777774
Q ss_pred CCC--CCC--ceeehhhhhhcccCCCchHHHHHHHHHHH
Q 001763 688 FPN--PKS--TVLWTAVISGHAQNDSNYEALHFYREMRS 722 (1017)
Q Consensus 688 ~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 722 (1017)
... ..+ -..|..||..-..-|+...+..+=++|.+
T Consensus 492 sv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 492 SVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 332 011 12344444444444555444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.30 E-value=2.2 Score=37.30 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=74.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCChHhH--HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHH
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDDVTF--LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLK 884 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~ 884 (1017)
...|..++..++..+.....- -+...| -.++. +-+-+-..+.++++-+-|.+.|- ...-.++..|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ssn-i~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSN-IKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS--HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcCC-ccccceeeeecch----hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH
Confidence 345777888888888776321 011222 11222 12223334444444332222221 12233455555555554
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
|-. ..-++....+|.-+.-...+..+++.+..+|...+.+++.|.+.|+..++.+++++.=++|+
T Consensus 87 e~v---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EYV---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHH---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHH---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 422 22345566778888888888888876667899999999999999999999999999988887
Q ss_pred c
Q 001763 965 K 965 (1017)
Q Consensus 965 ~ 965 (1017)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.63 Score=41.42 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=40.4
Q ss_pred cCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 001763 861 HGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL----TFEPDSRIWTTLLGACGVHR 913 (1017)
Q Consensus 861 ~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~----~~~p~~~~~~~ll~~~~~~g 913 (1017)
..+.|+......++.+|+..|++..|+++++.. +++-+...|..|+..+...-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 345677888888999999999999999887654 45556779999997665443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.27 E-value=6.3 Score=36.43 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=82.7
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhH---HHH--HHhhhc
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHC---ACM--VDLLGR 879 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~l--~~~l~~ 879 (1017)
+++.|..++|+..|.++.+.|...-. ...........+.|+..+|...|..+-.+ .|-+... .-+ ..+|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 46778888999999998887654222 22233444567889999999999988763 3333322 222 346788
Q ss_pred cCCHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCchHHHHHHHHHHh
Q 001763 880 WGFLKEAEEFIEQLTFEPDS---RIWTTLLGACGVHRDDIRGRLAAKKLIE 927 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 927 (1017)
.|-+++....++.+..+.++ ..-.+|+-+-++.|++..|...|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 99999999888877543332 2445677677789999999999998876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.3 Score=50.15 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=56.2
Q ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCChHhH-HHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchh--H
Q 001763 798 SWNSMIVGFAK----NGYAEDALKVFHEMKETQAMPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDH--C 870 (1017)
Q Consensus 798 ~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--~ 870 (1017)
.|+.++..+.- ....+.|.++++++.+ .-|+..-| ..-...+...|++++|++.|+.+.....--|...| +
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 45555544433 3567788899999888 46877544 34455677889999999999876541111122222 2
Q ss_pred HHHHHhhhccCCHHHHHHHHHhC
Q 001763 871 ACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 871 ~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
--+...+.-.+++++|.+.+..+
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHH
Confidence 23344455566666666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.19 Score=50.89 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=61.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhc
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~ 879 (1017)
.-++-|.++|++++|+..|...+. +.| |.+++..-..+|.+...+..|..-.+..+.. -...+.+|.|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSR 170 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSR 170 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHH
Confidence 346667777777777777777666 456 5577777777777777666666555544330 0111223333
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCch
Q 001763 880 WGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
-+.+-...|+.++|.+-++.+++++|++.+.
T Consensus 171 -------------------------R~~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 171 -------------------------RMQARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred -------------------------HHHHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 3333334577778888888888888875443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.54 Score=47.77 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=114.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHHH----HHhhhccC
Q 001763 807 AKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACM----VDLLGRWG 881 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~l~~~g 881 (1017)
.-.|+..+|-..++++++. .| |-..+...-.+|...|+.+.-...++++... -.|+...|..+ .-.+...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3578889999999999985 35 4467777778899999999999999988762 35666555433 45678899
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHHHHH
Q 001763 882 FLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 882 ~~~eA~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~ 955 (1017)
-+++|++..++. .++| |.=.-.++.......|...+|.+.-++--..=- .-.-.|-+.+-.|...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998875 5655 332444566667788888888776554322111 1244566777788888999999999
Q ss_pred HHHHHHcCCccCCce
Q 001763 956 RREMREKGVKKFPGC 970 (1017)
Q Consensus 956 ~~~m~~~~~~~~~g~ 970 (1017)
+..=.-...+|..+.
T Consensus 270 yD~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHHhhccchh
Confidence 987665666666553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.18 E-value=1.4 Score=42.61 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=70.1
Q ss_pred HHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCcHHHH
Q 001763 774 YAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 774 y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 850 (1017)
++-.+++++|.++|.+... +-.. .|+.-..+|++ |-++. ++.|-+-|. .||+-..++| +.+++++|
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK-~w~~AG~aflk------aA~~h---~k~~skhDaat~YveA~~cy-kk~~~~eA 92 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAK-NWSAAGDAFLK------AADLH---LKAGSKHDAATTYVEAANCY-KKVDPEEA 92 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH------HHHHH---HhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence 3444567777777665432 1111 34444443332 11111 122223333 3444444333 33466666
Q ss_pred HHHHHHhhhhcC----CCcCchhHHHHHHhhhcc-CCHHHHHHHHHhCC-----CCCCHHHHHHHHHH---HHhcCCchH
Q 001763 851 RQIFETMVSCHG----IQPRVDHCACMVDLLGRW-GFLKEAEEFIEQLT-----FEPDSRIWTTLLGA---CGVHRDDIR 917 (1017)
Q Consensus 851 ~~~~~~m~~~~~----~~p~~~~~~~l~~~l~~~-g~~~eA~~~~~~~~-----~~p~~~~~~~ll~~---~~~~g~~~~ 917 (1017)
...++..++-|- ...-..++-.+.+.|..- .++++|+..+++.. -+.++..-..++.. -...+++.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 665555443110 111122333344444322 45555555555431 11122222233311 223466777
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 918 GRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 918 a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
|+..|+++....-+|+-.-+.+-.-+.+.|
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 777777777666655544443333333333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.12 E-value=13 Score=38.96 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=51.3
Q ss_pred hHHHHHHHHhccCcHHH---HHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC-CC-hhHHHHHHHHH
Q 001763 731 TFVSVLRACAVLSSLRD---GGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE-RN-YVISWNSMIVG 805 (1017)
Q Consensus 731 t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 805 (1017)
++..+..++...+..+. |..+.+.+....+. .+.++..-++++.+.++.+++.+++.+|.. .+ ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666665443 44444444433332 455565666666667788888888877765 22 22244444443
Q ss_pred H---HhCCCHHHHHHHHHHHHHCCCCC
Q 001763 806 F---AKNGYAEDALKVFHEMKETQAMP 829 (1017)
Q Consensus 806 ~---~~~g~~~~A~~~~~~m~~~g~~p 829 (1017)
+ .. .....|...+..++..-+.|
T Consensus 165 i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 165 IKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 3 22 22344555555555433343
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.04 E-value=6.2 Score=42.38 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCchhHHHhhhcCCCC---Ccc----hHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 001763 196 ALIDMYAKLNNVSDARRVFDGAVDL---DTV----SWTSMIAGYVQ---AGLPEAAFELFEKMIKVGCVPDQVAFVTVIN 265 (1017)
Q Consensus 196 ~li~~~~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 265 (1017)
.|+-.|....+++...++++.+... +.. .--...-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444577778888888888876653 111 11123344556 7888999999888666666788888888887
Q ss_pred HHhc
Q 001763 266 VCFN 269 (1017)
Q Consensus 266 ~~~~ 269 (1017)
.|..
T Consensus 226 IyKD 229 (374)
T PF13281_consen 226 IYKD 229 (374)
T ss_pred HHHH
Confidence 7743
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.58 Score=46.36 Aligned_cols=99 Identities=14% Similarity=0.183 Sum_probs=74.1
Q ss_pred hHHHHhcccC--CCCchhHHHHHHHHHc-----CCChhhHHHHHHHHHhCCCCCChhhHHHHHHHhhcCC----------
Q 001763 108 LAEKVFDRLE--DRDILAWNSILSMYSK-----RGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSM---------- 170 (1017)
Q Consensus 108 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 170 (1017)
..++.|...+ ++|-.+|-+++.-+.. .++.+---..++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777776 7788888888887764 3566666777889999999999999999999886542
Q ss_pred ------ChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCC
Q 001763 171 ------DVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNN 206 (1017)
Q Consensus 171 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (1017)
.-+.+..++++|.-.|+.||-.+-..|++++++.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 234567777777777777777777777777766554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.16 Score=33.56 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 935 PYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 935 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
++..||++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999988744
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.80 E-value=5.1 Score=36.73 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=54.4
Q ss_pred CcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhc
Q 001763 221 DTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAK 300 (1017)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~ 300 (1017)
+......+|..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+..+.+.. ..+.......+..+.+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 33445667777877888888888888888776 366677888888887653 2333344432 2223333335555555
Q ss_pred cCCchHHHHHHHHH
Q 001763 301 RGYDAEAVNYFKRM 314 (1017)
Q Consensus 301 ~g~~~~A~~~~~~m 314 (1017)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.18 Score=32.70 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
+|..++..+...|+++.|...++++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57777788888899999999999999988853
|
... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=24 Score=41.01 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCc
Q 001763 561 IYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNV 607 (1017)
Q Consensus 561 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 607 (1017)
..+....++.+.-.|++++|-...-.|...+..-|.--+..+...+.
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 44667778888888888888888888887777777766666555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.67 E-value=1 Score=44.75 Aligned_cols=104 Identities=21% Similarity=0.355 Sum_probs=77.6
Q ss_pred HHHHHhcc--CCChhHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHcccCC-----------
Q 001763 784 AQVFDEMA--ERNYVISWNSMIVGFAKN-----GYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAG----------- 845 (1017)
Q Consensus 784 ~~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------- 845 (1017)
++.|..+. +++-. +|-+++..+..+ +..+=....++.|.+-|+.-|..+|..|++.+=+..
T Consensus 54 e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 34455554 35555 777777777654 455666678889999999989999999998765433
Q ss_pred -----cHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCC-HHHHHHH
Q 001763 846 -----RVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGF-LKEAEEF 889 (1017)
Q Consensus 846 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~-~~eA~~~ 889 (1017)
+-+=+++++++|.. +|+.||-+.-..++++++|.|. +.+-.++
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm 181 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRM 181 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHH
Confidence 23458899999987 9999999999999999999998 3344443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.54 E-value=5.1 Score=43.87 Aligned_cols=148 Identities=14% Similarity=0.050 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---ChHhHHHHHHHcccCCcHHHHHHHHHHhhhh-cCCCcCchhHHH
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMP---DDVTFLGVLTACSHAGRVSEGRQIFETMVSC-HGIQPRVDHCAC 872 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~ 872 (1017)
.+|..++..+.++|+++.|...+.++...+..+ +......-+...-..|+.++|+..++..++. ..-..+......
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAE 226 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHH
Confidence 478888888888999988888888887743111 1223333445556678888888888777661 111111111111
Q ss_pred HHHhhhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 001763 873 MVDLLGRWGFLKEAEEF-IEQLTFEPDSRIWTTLLGACGVH------RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
+...+.. ..+..... ........-..++..++..+... ++.+.+...|+.+++++|....++..++..+..
T Consensus 227 ~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 227 LKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred Hhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 1111000 00000000 00000000012344444444444 788999999999999999999999998888765
Q ss_pred c
Q 001763 946 L 946 (1017)
Q Consensus 946 ~ 946 (1017)
.
T Consensus 305 ~ 305 (352)
T PF02259_consen 305 L 305 (352)
T ss_pred H
Confidence 5
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.49 E-value=22 Score=40.07 Aligned_cols=181 Identities=14% Similarity=0.129 Sum_probs=126.0
Q ss_pred CcchHhHHHhHHHhcCCHHHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh-HhHHHHHH
Q 001763 763 DEITGSALIDMYAKCGDVKRSAQVFDEMAERN--YVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLT 839 (1017)
Q Consensus 763 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 839 (1017)
+...|..-++.-.+.|+.+.+.-+|++...+- ....|-..+.-....|+.+-|..++....+--. |+. .+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHHH
Confidence 34566777777888999999999999876532 223677776666666888888877766665432 333 33333334
Q ss_pred HcccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHH---HHHHhC-CCCCCHHHHH----HHHHH-H
Q 001763 840 ACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAE---EFIEQL-TFEPDSRIWT----TLLGA-C 909 (1017)
Q Consensus 840 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~---~~~~~~-~~~p~~~~~~----~ll~~-~ 909 (1017)
.+...|+.+.|..+++.+.+++ |+.. .-.--+....|.|.++.+. +++... +..-+..+.. .+... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 4678999999999999998854 6543 3344466788999999988 555543 2222222222 22222 3
Q ss_pred HhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 001763 910 GVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 910 ~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
...++.+.|...+.++++..|++..-|..+.++-...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 35689999999999999999999999999998877766
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.4 Score=41.59 Aligned_cols=108 Identities=14% Similarity=0.136 Sum_probs=72.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh------HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCchhHHH
Q 001763 799 WNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD------VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCAC 872 (1017)
Q Consensus 799 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 872 (1017)
...=.+-+...|++++|..-|.+.++. -|.. +.|..-..+..+.+.|+.|+.-..+.++ +-|...-.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kA-- 170 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKA-- 170 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHH--
Confidence 344577788999999999999999994 4432 4566667788899999999998888776 44432210
Q ss_pred HHHhhhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHH
Q 001763 873 MVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 873 l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
...-..+|-+...++.|+.-|+++++++|.+..+.-..+.+
T Consensus 171 -----------------------------l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 171 -----------------------------LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred -----------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 00112234444566777777888888888666555544443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.18 Score=32.73 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHH
Q 001763 752 HSLIFHTGYDLDEITGSALIDMYAKCGDVKRSA 784 (1017)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~ 784 (1017)
++++++..|. ++.+|+.|+.+|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455666665 7777778888888888877775
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.4 Score=33.39 Aligned_cols=32 Identities=19% Similarity=0.478 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD 831 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 831 (1017)
.|..+...|...|++++|+++|+++++ ..||.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 566777778888888888888888777 45665
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=32 Score=40.72 Aligned_cols=76 Identities=9% Similarity=-0.035 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhhCCCCCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHh
Q 001763 662 DFLHIALLSMYMNSKRNTDARLLFTEFPNPKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACA 740 (1017)
Q Consensus 662 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~ 740 (1017)
......-...+.+.+++.+..+++..- |.+.........+....|+.++|....+++-..|. ........+++...
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~ 174 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQ 174 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHH
Confidence 333334444556677777777633222 24444555666677777877777777777655442 22233444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.1 Score=49.78 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=34.3
Q ss_pred hhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHH
Q 001763 877 LGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLR 956 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 956 (1017)
-.+.|+++.|.+..++.. ++..|..|+.....+||++.|+.+++++ .-+..|.-+|...|+-++-.++-
T Consensus 328 Al~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHH
T ss_pred HHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHH
Confidence 344555555555444322 4445555555555555555555555542 23344444555555544444444
Q ss_pred HHHHH
Q 001763 957 REMRE 961 (1017)
Q Consensus 957 ~~m~~ 961 (1017)
+...+
T Consensus 397 ~~a~~ 401 (443)
T PF04053_consen 397 KIAEE 401 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.81 E-value=6.1 Score=38.54 Aligned_cols=100 Identities=14% Similarity=0.257 Sum_probs=62.4
Q ss_pred HHHHHcccC-CcHHHHHHHHHHhhhhcCCCcC-chhHHHHH---HhhhccCCHHHHHHHHHhCC---CCCCHHHHHH---
Q 001763 836 GVLTACSHA-GRVSEGRQIFETMVSCHGIQPR-VDHCACMV---DLLGRWGFLKEAEEFIEQLT---FEPDSRIWTT--- 904 (1017)
Q Consensus 836 ~l~~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~---~~l~~~g~~~eA~~~~~~~~---~~p~~~~~~~--- 904 (1017)
.+...|... .++++|+..|+..-+-|..+.. ...--|++ +.-...|++.+|++.++++. ...+-.-|..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344455433 6777888888877664433322 22223443 33467788999999988763 2222223433
Q ss_pred HH--HHHHhc-CCchHHHHHHHHHHhhCCCCCch
Q 001763 905 LL--GACGVH-RDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 905 ll--~~~~~~-g~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
++ +.|... .|.--+..++++..+++|.....
T Consensus 198 flkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 198 FLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 33 457766 78888999999999999965544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.4 Score=42.67 Aligned_cols=94 Identities=10% Similarity=0.099 Sum_probs=69.0
Q ss_pred cchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHccc
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSH 843 (1017)
Q Consensus 764 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 843 (1017)
..++..++-++++.|+++....++++.-.-+.. +-...+. --......|+..++.+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~--------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN--------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC--------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 456777888888888888888888765543322 1111111 11124467899999999999999
Q ss_pred CCcHHHHHHHHHHhhhhcCCCcCchhHHHHH
Q 001763 844 AGRVSEGRQIFETMVSCHGIQPRVDHCACMV 874 (1017)
Q Consensus 844 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 874 (1017)
.|++..|.++.+...+.|+++-....+..|.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999877777777665
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.32 Score=32.07 Aligned_cols=29 Identities=10% Similarity=-0.048 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhC
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELE 929 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 929 (1017)
+|..|+.+|...|++++|+..+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888999999999999999966553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.21 E-value=8 Score=38.03 Aligned_cols=88 Identities=11% Similarity=0.121 Sum_probs=53.9
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccC--------CChhHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCC-hHh
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAE--------RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQ--AMPD-DVT 833 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~-~~~ 833 (1017)
..+.....+|.+..++++|-..|.+-.. +..-..+.+.|-.|....++..|...+++--+.+ ..|+ ..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 3455566777788888888777765432 1111134455566666778888888888765532 1232 357
Q ss_pred HHHHHHHcccCCcHHHHHHH
Q 001763 834 FLGVLTACSHAGRVSEGRQI 853 (1017)
Q Consensus 834 ~~~l~~~~~~~g~~~~a~~~ 853 (1017)
.-.|+.+|. .|+.+++..+
T Consensus 231 lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 231 LENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhc-cCCHHHHHHH
Confidence 777887765 5666665554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.19 E-value=35 Score=39.73 Aligned_cols=74 Identities=20% Similarity=0.169 Sum_probs=38.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCch
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVP---DQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDA 305 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 305 (1017)
.-+.+.+.+++|++..+.-. |..| -.......|..+.-.|++++|-...-.|...+..-|.--+..+...++..
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455566666665544321 2222 12234455555666666666666666665555555555555555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.15 E-value=25 Score=37.95 Aligned_cols=417 Identities=13% Similarity=0.100 Sum_probs=208.2
Q ss_pred CchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcc---cchhhhHHhHhcCCHHHHHHHHHHhhccCCCCCcccHHHHH
Q 001763 456 ATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNV---SWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASIL 532 (1017)
Q Consensus 456 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 532 (1017)
+.|+..|-.||.-|...|.+++-++++++|..|-.. +|..-+++-...+++.....+|.+-+...+..| .|...|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 457778888899898899999999999998876443 688888877777888888888888776655433 333344
Q ss_pred HHhhcccCCCcch------hHHHHHhh-hCCCCCchHHHHHHHHHHH---------HcCCHHHHHHHHhcCCCC---Cch
Q 001763 533 SACANIQGLPQGE------QVHCFSVK-TSLETSNIYVGSSLIDMYV---------KCGFIGAAHKVLSCMPQR---NVV 593 (1017)
Q Consensus 533 ~a~~~~~~~~~~~------~i~~~~~~-~~~~~~~~~~~~~l~~~y~---------~~g~~~~A~~~~~~~~~~---~~~ 593 (1017)
.-.-+.+..-.|+ +.++..+. .+++|.....|+..++... ...++|..++.+.++... |..
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 4333444333332 22333332 4555555566666555432 123445566666666541 111
Q ss_pred -hHH------HHHHH-----HhhCCch---HHHHHHHHHHH--cCCCCCh----HHHH-----------HHHHhccCC--
Q 001763 594 -SMN------ALIAG-----YAQNNVE---DAVVLYRGMQT--EGLSPND----ITFT-----------SLLDACDGP-- 639 (1017)
Q Consensus 594 -~~~------~li~~-----~~~~~~~---~A~~l~~~m~~--~g~~p~~----~t~~-----------~ll~a~~~~-- 639 (1017)
.|+ .=+.. +.....+ .|.+.+++... .|.+.-. .|++ ..+.--...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l 276 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGL 276 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCc
Confidence 222 11211 2222222 56666666643 3443221 2222 222111100
Q ss_pred ---Cc-cch-hhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC-CCCceeehhhhhhccc-CCCchH
Q 001763 640 ---YK-FHL-GTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN-PKSTVLWTAVISGHAQ-NDSNYE 712 (1017)
Q Consensus 640 ---~~-~~~-a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~-~g~~~~ 712 (1017)
++ ... .--+|++++..- |-.+.++..-...+...++-+.|......-.. .|+ .+...+-|.. ..+-++
T Consensus 277 ~L~~~~~~qRi~y~~~q~~~y~--~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~ 351 (660)
T COG5107 277 KLGGRPHEQRIHYIHNQILDYF--YYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEA 351 (660)
T ss_pred ccCCCcHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHH
Confidence 11 111 111233333322 34555565555566666777777766655432 222 1111222222 233333
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHH---hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHh
Q 001763 713 ALHFYREMRSHNVLPDQATFVSVLRAC---AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDE 789 (1017)
Q Consensus 713 A~~~~~~m~~~~~~pd~~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 789 (1017)
.-..|++..+. ...=.+.+.+- ...|+.+.-.+.+-.-+. + -..++.++++.-.+..-++.|+.+|-+
T Consensus 352 v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~---k-~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 352 VYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN---K-LTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh---h-hhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334443221 00000011100 112223222222111110 1 234666677777777777778888877
Q ss_pred ccCCChh----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHcccCCcHHHHHHHHHHhhhhcCCC
Q 001763 790 MAERNYV----ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFL-GVLTACSHAGRVSEGRQIFETMVSCHGIQ 864 (1017)
Q Consensus 790 ~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 864 (1017)
..+.+.+ -.+++++.-++. |+..-|..+|+--+. ..||...|. -.+.-+...++-+.|..+|+..++. +.
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r--~~ 497 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVER--LE 497 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH--HH
Confidence 7664422 145566665544 666777777776555 346654432 2333345567777777777765542 22
Q ss_pred cC--chhHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 865 PR--VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 865 p~--~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.+ ...|..|++--..-|.+..+..+-+++
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 22 345666666555666666666555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.85 E-value=0.47 Score=30.67 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD 830 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 830 (1017)
+|..++..|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 678888888888888888888888888 5665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.65 E-value=7.5 Score=35.91 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=53.6
Q ss_pred HHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHH-HHHHHHHHhCCCHHH
Q 001763 736 LRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISW-NSMIVGFAKNGYAED 814 (1017)
Q Consensus 736 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~ 814 (1017)
++.-...++.+.+..++..+.-..|. .+..-..-+..+.+.|+|++|+.+|+++........+ .+|+..|....+-..
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 34445566777777777777666665 4455555566677788888888888887764443122 344443333322222
Q ss_pred HHHHHHHHHHCCCCCCh
Q 001763 815 ALKVFHEMKETQAMPDD 831 (1017)
Q Consensus 815 A~~~~~~m~~~g~~p~~ 831 (1017)
--..-+++++.+-.|+.
T Consensus 96 Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 96 WRRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHHhcCCChHH
Confidence 33334455555434443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.35 E-value=5.7 Score=36.65 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=50.6
Q ss_pred ccCCcHHHHHHHHHHhhhhcCCCcCch-hHHHHHHhhhccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCchHHH
Q 001763 842 SHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQLT-FEPDSRIWTTLLGACGVHRDDIRGR 919 (1017)
Q Consensus 842 ~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~ 919 (1017)
...++.+++..++..+.- +.|... +-.+-+.++.+.|++.+|+.+++++. -.|....-.+|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 345566666666666654 455432 22333445566677777777776653 3344445566776666544333334
Q ss_pred HHHHHHHhhCCCCCchHHHH
Q 001763 920 LAAKKLIELEPENPSPYVQL 939 (1017)
Q Consensus 920 ~~~~~~l~~~p~~~~~~~~l 939 (1017)
..++.+++..| ++.+...+
T Consensus 98 ~~A~evle~~~-d~~a~~Lv 116 (160)
T PF09613_consen 98 RYADEVLESGA-DPDARALV 116 (160)
T ss_pred HHHHHHHhcCC-ChHHHHHH
Confidence 44556666665 34343333
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.5 Score=48.06 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=58.0
Q ss_pred HhhhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHH
Q 001763 875 DLLGRWGFLKEAEEFIEQ-LTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 875 ~~l~~~g~~~eA~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
+-|-++|+++||++.+.+ |...| +++.+.+-..+|.+...+..|+.-.+.++.++-....+|..-+..-...|+..+|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 346667777777777765 44566 6667777777777777777777777777777776666777777666677776666
Q ss_pred HHHHHH
Q 001763 953 NTLRRE 958 (1017)
Q Consensus 953 ~~~~~~ 958 (1017)
.+-.+.
T Consensus 185 KkD~E~ 190 (536)
T KOG4648|consen 185 KKDCET 190 (536)
T ss_pred HHhHHH
Confidence 554433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=89.47 E-value=13 Score=32.74 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 735 VLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 735 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
.+++....|.-+.-..+...+.+ +-++++.....+..+|.+.|+..+|.+++.+..+++.
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444455555555555444443 2223455555555555555555555555555544444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.43 E-value=42 Score=37.93 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=71.8
Q ss_pred HHhcCChHHHHHHHhhCCC----------CCCceeehhhhhhcccCCCchHHHHHHHHHHHCCCCcCHHhHHHHHHHHhc
Q 001763 672 YMNSKRNTDARLLFTEFPN----------PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAV 741 (1017)
Q Consensus 672 ~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~ 741 (1017)
|-..-...+.+-.|+.... +.+...|..-+.-....|+.+...-+|++..--=-.-| .-|..-+.-...
T Consensus 265 ~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~ 343 (577)
T KOG1258|consen 265 YQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMES 343 (577)
T ss_pred HHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHH
Confidence 3344445555555555433 12335666666666777777777777777642100001 112222222333
Q ss_pred cCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHHhCCCHHHHH
Q 001763 742 LSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDAL 816 (1017)
Q Consensus 742 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 816 (1017)
.|+.+.+..+..+..+...+..+.+.-.-...--..|++++|..+++.+.. +|.+..-.--+......|+.+.+.
T Consensus 344 ~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 344 SGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred cCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 366666666666555544432332222222223345677777777776654 444422222344445556666555
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.16 Score=47.01 Aligned_cols=83 Identities=16% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHH
Q 001763 162 VLSACSKSMDVSYGRQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAA 241 (1017)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (1017)
+++.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666777777777777766666778888888888888888888888774332 3334556666666666666
Q ss_pred HHHHHH
Q 001763 242 FELFEK 247 (1017)
Q Consensus 242 ~~~~~~ 247 (1017)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.47 Score=43.86 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHhhhcccchHhhHHHHHHHHHhcCCchhhHHHHHHHHhhccCChhHHHHHHhhcCCCCcccchhhhHHhHhcCCHHH
Q 001763 429 SILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFE 508 (1017)
Q Consensus 429 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 508 (1017)
.++..+.+.+..+....+++.+.+.+...+..+.+.++..|++.+..+...++++.. +..-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHH
Confidence 456677777888888889999988777778899999999999998888888888733 33555678888888999999
Q ss_pred HHHHHHHhhc
Q 001763 509 AFNMFRRMNL 518 (1017)
Q Consensus 509 A~~~~~~m~~ 518 (1017)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 9999888654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.89 E-value=31 Score=36.46 Aligned_cols=77 Identities=16% Similarity=-0.010 Sum_probs=44.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-------------
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACG----VHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALG------------- 947 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g------------- 947 (1017)
.|...+.+....-++.....|+..+. ...|.++|...|+++-+... ....+.++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555555422223334444443331 23377888888888888776 66777777 666555
Q ss_pred --CcHHHHHHHHHHHHcCC
Q 001763 948 --NWNEVNTLRREMREKGV 964 (1017)
Q Consensus 948 --~~~~a~~~~~~m~~~~~ 964 (1017)
++..|...+.+..+.+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55666666665555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.77 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPD 830 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 830 (1017)
.|..+...+...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567777788888888888888888777 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.62 E-value=17 Score=34.04 Aligned_cols=130 Identities=13% Similarity=0.121 Sum_probs=67.9
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCC
Q 001763 179 HCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAG--LPEAAFELFEKMIKVGCVPD 256 (1017)
Q Consensus 179 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~ 256 (1017)
...+.+.|+.++...+..+|+.+.+.|++.....++.--+-+|.......+-.+.... -..-|++++.++..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~------ 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT------ 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh------
Confidence 3344455666666666667777777666666666665444444333333332221111 12233444444321
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHhcCCCCccchHHHHHHHhccCCchHHHHHHHHHHh
Q 001763 257 QVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAWNVMISGHAKRGYDAEAVNYFKRMRK 316 (1017)
Q Consensus 257 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (1017)
.+..+++.+...|++-+|.++.+....-+......++.+-.+.+|...-..+|+-..+
T Consensus 91 --~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2455666677777777777777665544444445555555555555544444444443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.23 E-value=26 Score=33.93 Aligned_cols=82 Identities=9% Similarity=-0.196 Sum_probs=52.3
Q ss_pred CccchhhHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCceeehhhhhhcccCCCchHHHHHH
Q 001763 640 YKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFY 717 (1017)
Q Consensus 640 ~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 717 (1017)
|.+..|+--+.+.+... |.-+.+++-|+-.+...|+++.|.+.|+.+.+ |...-+.-.-+-++.-.|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 44444554455555444 77788888888888889999999998888776 222222222233344567787777766
Q ss_pred HHHHHC
Q 001763 718 REMRSH 723 (1017)
Q Consensus 718 ~~m~~~ 723 (1017)
.+.-+.
T Consensus 157 ~~fYQ~ 162 (297)
T COG4785 157 LAFYQD 162 (297)
T ss_pred HHHHhc
Confidence 665544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.01 E-value=41 Score=39.76 Aligned_cols=85 Identities=19% Similarity=0.161 Sum_probs=37.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHH-HHHHhcC-CCCccchHHHHHHHhcc---CCc
Q 001763 230 AGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEAR-ELFAQMQ-NPNVVAWNVMISGHAKR---GYD 304 (1017)
Q Consensus 230 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~-~~~~~~~~~li~~~~~~---g~~ 304 (1017)
..+.-.|.+|.|++++-+ ..+...|.+.+...+.-|.-.+-.+... .++..-. .+...-+..||..|++. .+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 445667888888888776 2233445555555544433222111111 1111111 12224567778777763 566
Q ss_pred hHHHHHHHHHHh
Q 001763 305 AEAVNYFKRMRK 316 (1017)
Q Consensus 305 ~~A~~~~~~m~~ 316 (1017)
.+|.+.|--+..
T Consensus 344 ~~Al~Y~~li~~ 355 (613)
T PF04097_consen 344 REALQYLYLICL 355 (613)
T ss_dssp HHHHHHHHGGGG
T ss_pred HHHHHHHHHHHH
Confidence 677777666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.87 E-value=44 Score=36.20 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=107.5
Q ss_pred hcCCHHHHHHHHHhccCCChh---HHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHcccCCcH
Q 001763 776 KCGDVKRSAQVFDEMAERNYV---ISWNSMIVG-FAKNGYAEDALKVFHEMKETQAMPDD----VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~~~~~---~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~ 847 (1017)
-.|+-++|.+.+..+...... -.+-.|+.+ .....+..+|+++|++..- .-|-. .....-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 368888888888877652221 245566554 4455688899999998876 45643 2344445566788999
Q ss_pred HHHHHHHHHhhhhcCCCcCchhHH-HHHHhhhccC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Q 001763 848 SEGRQIFETMVSCHGIQPRVDHCA-CMVDLLGRWG---FLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAK 923 (1017)
Q Consensus 848 ~~a~~~~~~m~~~~~~~p~~~~~~-~l~~~l~~~g---~~~eA~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 923 (1017)
+++..+-..-...|.-.|=...+. .++.++.+.+ +.+.-.+++..|.-.-...+|..+...-...|+.+.|..+.+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 988888777777677677655443 3334443333 333333444444322234477777777778999999999999
Q ss_pred HHHhhCCCCCchHHHHHHHHHhc
Q 001763 924 KLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 924 ~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
+++.+.. ....-...+++|...
T Consensus 282 ~A~~L~~-~~~~~~~ra~LY~aa 303 (421)
T PRK12798 282 RALKLAD-PDSADAARARLYRGA 303 (421)
T ss_pred HHHHhcc-CCCcchHHHHHHHHH
Confidence 9999974 344445556666543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.65 E-value=8.7 Score=42.92 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=64.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHhCCCCchhhhHHHHHHHHccCChhHHHHHHhhcCCCCcchHHHHHHHHHhCCCh
Q 001763 326 LGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYA 405 (1017)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 405 (1017)
...+++.+.+.|-.+.|.++-..-. .-.+...++|+++.|.++.+... +...|..|.....++|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4555555555666665555532211 12345667899999988877665 556899999999999999
Q ss_pred hHHHHHHHhhhhcCCCCChhcHHHHHHhhhcccchHhhHHHHHHHHHhc
Q 001763 406 HEVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNK 454 (1017)
Q Consensus 406 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 454 (1017)
+-|.+.|.+..+ |..++-.+...|+.+.-..+.......|
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999888654 3344444444555555555554444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.58 E-value=26 Score=42.79 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCchhHHHhhhcCCCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 001763 194 KGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRL 273 (1017)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 273 (1017)
+.-.++.--+.|-+.+|..++..-.+.-.+.|.+...-+.+.+.+++|.-+|+..-+. ..-+.+|-.+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccH
Confidence 3344444445566666666554444444445555666666677777776666553221 1234455555555
Q ss_pred HHHHHHHHhcCCCCccc---hHHHHHHHhccCCchHHHHHHHH
Q 001763 274 DEARELFAQMQNPNVVA---WNVMISGHAKRGYDAEAVNYFKR 313 (1017)
Q Consensus 274 ~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~ 313 (1017)
.+|+.+-.++..+-... -..|+.-+...+++-+|-++..+
T Consensus 982 r~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen 982 REALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence 55555555554322111 13444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.55 E-value=4.5 Score=38.80 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred chHhHHHhHHHhcCCHHHHHHHHHhccCCCh-----hHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 765 ITGSALIDMYAKCGDVKRSAQVFDEMAERNY-----VISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 765 ~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
..+..+++.|++.|++++|.+.+.++..... ...+..+|......|++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455677778888888888888877765322 13456677777777777777766666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.53 E-value=17 Score=42.32 Aligned_cols=51 Identities=25% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CCcHHHHHHHHHHHHcCCc
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL-GNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~~~ 965 (1017)
.+.+.|...++++-+.+ ++.+...++..|.-. ++++.+.-.+..+.+.|.+
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 46677777777777776 455555666555543 7777777766666666554
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.56 Score=29.96 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 935 PYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 935 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
+++.+|.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5788999999999999999999988764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.76 E-value=2.6 Score=40.36 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHH
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEV 952 (1017)
Q Consensus 901 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a 952 (1017)
.....++.++...|.++++..+-+++++.+ -|+..+..|+.+|.+.|+++.|
T Consensus 142 elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 142 ELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344445556678899999999999999854 3688999999999999999887
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.71 E-value=3.5 Score=38.63 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HhHHHHHHHcccCCc-----------HHHHHHHHHHhhhhcCCCcCchhHHHHHHhh
Q 001763 812 AEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGR-----------VSEGRQIFETMVSCHGIQPRVDHCACMVDLL 877 (1017)
Q Consensus 812 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 877 (1017)
+++|+.=|++.+. ++|+. .++..+.++|...+. +++|...|++... .+|+.+.|..-..+.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH
Confidence 4567777777777 67876 678788887765433 4455555555544 678878777655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.3e+02 Score=40.36 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCC
Q 001763 900 RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGV 964 (1017)
Q Consensus 900 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 964 (1017)
.+|..+...++..|.++.|..+.-++.+.. -+.++.-.|......|+...|..+.+...+...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 489999999999999999999998888887 478999999999999999999999987776433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.49 E-value=0.75 Score=27.62 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHH
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRR 957 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~ 957 (1017)
.++..|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999988765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.14 E-value=3.2 Score=38.82 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHhhCC
Q 001763 916 IRGRLAAKKLIELEP 930 (1017)
Q Consensus 916 ~~a~~~~~~~l~~~p 930 (1017)
++|...|+++.+.+|
T Consensus 97 ~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 97 EKATEYFQKAVDEDP 111 (186)
T ss_dssp HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhcCC
Confidence 444444444555555
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=47 Score=34.68 Aligned_cols=73 Identities=8% Similarity=-0.031 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhcCCCCCchhHHHHHHHHhhCCchHHHHHHHHHHHcCCCCChHHHHHHHHhc
Q 001763 560 NIYVGSSLIDMYVKCGFIGAAHKVLSCMPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDAC 636 (1017)
Q Consensus 560 ~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 636 (1017)
+..+....+.++++.|+..-.-.+++.+..++ + .-..+.++..-|..+|+..+.++... .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~-~-~~~a~~ALg~ig~~~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT-V-GDLIIEAAGELGDKTLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc-h-HHHHHHHHHhcCCHhHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66667777777777777433333333333333 2 33456667777777788877777763 23544444444443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=86.03 E-value=2.1 Score=31.16 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHH
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 904 ~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
.+.-++.+.|+++.|....+.+++.+|+|..+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 35566789999999999999999999987665443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.99 E-value=13 Score=33.72 Aligned_cols=55 Identities=7% Similarity=-0.086 Sum_probs=39.8
Q ss_pred hccCcHHHHHHHHHHHHHhCCCCCcchHhHHHhHHHhcCCHHHHHHHHHhccCCCh
Q 001763 740 AVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAERNY 795 (1017)
Q Consensus 740 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~ 795 (1017)
...++.+++..+++.+.-..|+ ....-..-+-.+...|+|++|..+|+++.+...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3477788888888877766665 444555556667788899999999988887543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.67 E-value=38 Score=37.04 Aligned_cols=54 Identities=9% Similarity=-0.022 Sum_probs=39.3
Q ss_pred HhHHHhcCCHHHHHHHHHhccC---CChh--------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE---RNYV--------ISWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 771 ~~~y~~~g~~~~A~~~~~~~~~---~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
...+.-.|++.+|.+++...-. ++.. ..||.|...+.+-|.+..+..+|.+.++
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 4566778999999998875532 3311 2478888888888888888888887764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.31 E-value=17 Score=34.75 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHhccCcHHHHHHHHHHHHHhCCC--CCcchHhHHHhHHHhcCCHHHHHHHHHhccCCChhHHH-HHHHHHHHhCCCHH
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYD--LDEITGSALIDMYAKCGDVKRSAQVFDEMAERNYVISW-NSMIVGFAKNGYAE 813 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 813 (1017)
......+++++|...++..+..--+ ....+--.|..+....|.+|+|...++....++..... ..-...+...|+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3455566666666666655432111 11122234555566666666666666666665554111 22344566666666
Q ss_pred HHHHHHHHHHHCC
Q 001763 814 DALKVFHEMKETQ 826 (1017)
Q Consensus 814 ~A~~~~~~m~~~g 826 (1017)
+|..-|++.++.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 6666666666643
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.86 E-value=5.2 Score=36.19 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=31.5
Q ss_pred cCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 001763 912 HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 912 ~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 963 (1017)
.++.++++.+...+--+.|+.++.-..-++++...|+|+||..+++.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555566666555555666666666666666666666666666665555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.41 E-value=25 Score=37.00 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCCCh-HhH-HHHHHHcccCCc--HHHHHHHHHHhhhhcCCCcCchhHHHHHHh
Q 001763 813 EDALKVFHEMKETQAMPDD-VTF-LGVLTACSHAGR--VSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 813 ~~A~~~~~~m~~~g~~p~~-~~~-~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
++.+..|+.+.+.|+..+. .-+ ..++..+..... +..+.++++.+.+ .|+++...||..++-+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 5677888888888887755 333 334443332222 5578888888887 6999999998877543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.57 E-value=7.5 Score=39.89 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-ChHhHHHHHHHcccCCcHHHHHHHHHHhhh----hcCCCcCchh
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMP-DDVTFLGVLTACSHAGRVSEGRQIFETMVS----CHGIQPRVDH 869 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 869 (1017)
+...++..+...|+++.+.+.++++.. ..| |...|..++.+|...|+...|+..|+.+.+ +.|+.|..+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 555666666677777777777777766 344 446666677777777777777777666644 2344444443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=6.7 Score=40.34 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCccCCceeEEEECCEEEE
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVKKFPGCSWIVLGQNTNF 981 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~g~s~i~~~~~~~~ 981 (1017)
.++|-.++...++++.|....+.++.++|+++.-+--.|-+|.+.|.+..|..-++.-.+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455577888999999999999999999999988888999999999999999888766655432
Q ss_pred EecCCCCCCChHHHHHHHHHHHHH
Q 001763 982 FVAGDTSHPNADRICAVLEDLTAS 1005 (1017)
Q Consensus 982 f~~~d~~~~~~~~~~~~l~~l~~~ 1005 (1017)
-|.+..|-..++.|.++
T Consensus 248 -------dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------chhHHHHHHHHHHHhhc
Confidence 36666666666666554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.47 E-value=1.7 Score=27.94 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 824 (1017)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777777777777777776
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.44 E-value=2 Score=27.22 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCCCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPEN 932 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p~~ 932 (1017)
+..++.++...|+.+.|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3456667778899999999999999999963
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.38 E-value=1.7 Score=29.58 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 001763 934 SPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 934 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 962 (1017)
.++.+||.+|...|++++|.+++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999888764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=83.22 E-value=65 Score=33.92 Aligned_cols=125 Identities=12% Similarity=0.217 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhc--cC----CHHHHHHHHHhcCC-------CCccchHHHHHHHhccCCc
Q 001763 238 PEAAFELFEKMIKVGCVPDQVAFVTVINVCFN--LG----RLDEARELFAQMQN-------PNVVAWNVMISGHAKRGYD 304 (1017)
Q Consensus 238 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~~~~~m~~-------~~~~~~~~li~~~~~~g~~ 304 (1017)
+++.+.+++.|.+.|..-+..+|.+..-.... .. ....|..+|+.|++ ++-.++..++.. ...+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34567788999999999988887764433333 22 34568889999985 455566666654 33333
Q ss_pred ----hHHHHHHHHHHhcCCCCChh--hHHHHHHHHhcccc--hhHHHHHHHHHHHhCCCCchhhhHHH
Q 001763 305 ----AEAVNYFKRMRKAGVKSSRS--TLGSVLSGISSLAA--LDFGLIVHAEAIKQGLYSNVYVASSL 364 (1017)
Q Consensus 305 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~l 364 (1017)
+.++.+|+.+.+.|...+.. ....++..+..... ...+..+++.+.+.|+......|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 56777888888877776543 23333333322222 34666777777777776655555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=82.76 E-value=7.6 Score=37.23 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCh--HhHHHHHHHcccCCcHHHHHHHHHHhhhhcCCCcCch------
Q 001763 797 ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD------ 868 (1017)
Q Consensus 797 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~------ 868 (1017)
..|..++.-|.+.|+.++|++.|.++.+....|.. ..+..++..+...|+|..+.....++........+.+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 47889999999999999999999999997656655 3577888889999999999998888766221111111
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHhC
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
.|..+ .+...|++.+|-+.+-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12222 234567788777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.97 E-value=5.3 Score=40.91 Aligned_cols=54 Identities=20% Similarity=0.224 Sum_probs=25.9
Q ss_pred HHHHhcCCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001763 907 GACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 907 ~~~~~~g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 960 (1017)
..+...|+++.++...+.+++.+|-+-..|..|...|...|+...|+..++.++
T Consensus 161 e~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 161 EALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 333344444444444444555555444444445555555555555544444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.72 E-value=60 Score=32.52 Aligned_cols=221 Identities=13% Similarity=0.195 Sum_probs=129.9
Q ss_pred hhhhhhcccCCCchHHHHHHHHHHHC---CC--CcCHHhHHHHHHHHhccCcHHHHHHHHHHHHHh-----CCCCCcchH
Q 001763 698 TAVISGHAQNDSNYEALHFYREMRSH---NV--LPDQATFVSVLRACAVLSSLRDGGEIHSLIFHT-----GYDLDEITG 767 (1017)
Q Consensus 698 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 767 (1017)
..||..+.+.|++++-++.|++|+.- .+ .-+..+.+++++--+...+.+.-...++..++. +-..-..+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34666777788888888777777531 11 223456677777666666666666665533221 111223445
Q ss_pred hHHHhHHHhcCCHHHHHHHHHhccC------------CChh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCChH
Q 001763 768 SALIDMYAKCGDVKRSAQVFDEMAE------------RNYV--ISWNSMIVGFAKNGYAEDALKVFHEMKETQ-AMPDDV 832 (1017)
Q Consensus 768 ~~l~~~y~~~g~~~~A~~~~~~~~~------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 832 (1017)
..|+..|...|++..-.++++++.. ++.. ..|..-|..|..+.+-.+-..+|++.+... --|..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP- 227 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP- 227 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-
Confidence 5788899888888888888776642 1111 245556777877777777778888876521 12332
Q ss_pred hHHHHHHHc-----ccCCcHHHHHHHHHHhhhhcCCCcCch-----hHHHHHHhhhccCC--H--HHHHHHHHhCCC--C
Q 001763 833 TFLGVLTAC-----SHAGRVSEGRQIFETMVSCHGIQPRVD-----HCACMVDLLGRWGF--L--KEAEEFIEQLTF--E 896 (1017)
Q Consensus 833 ~~~~l~~~~-----~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l~~~l~~~g~--~--~eA~~~~~~~~~--~ 896 (1017)
...+++.-| .+.|.|++|-.-|-..-+.|.-.-++. -|-.+.+++.+.|- + .|| -|. .
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA------KPyKNd 301 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA------KPYKND 301 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc------CCCCCC
Confidence 334555555 467999998776666555454322222 24455666666652 1 111 132 3
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 897 PDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 897 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
|.......|..+|+. ++ +..|+++++.+.
T Consensus 302 PEIlAMTnlv~aYQ~-Nd----I~eFE~Il~~~~ 330 (440)
T KOG1464|consen 302 PEILAMTNLVAAYQN-ND----IIEFERILKSNR 330 (440)
T ss_pred HHHHHHHHHHHHHhc-cc----HHHHHHHHHhhh
Confidence 445567788888854 33 334666666544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.70 E-value=32 Score=37.51 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCCcHHHHHHHHHHHHcCCc
Q 001763 898 DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEP----ENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 898 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 965 (1017)
...+|..+...|+++|.++.|..++.++.+.++ ..+...+.-+.+....|+..+|....+...+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999998763 25677888899999999999999988777764343
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=81.23 E-value=49 Score=31.14 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHHHH
Q 001763 242 FELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFA 281 (1017)
Q Consensus 242 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 281 (1017)
++++..+.+.|++|+...|..+++.+.+.|++.....++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3455566677888888888888888888887766555443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.2 Score=45.95 Aligned_cols=86 Identities=12% Similarity=-0.027 Sum_probs=43.0
Q ss_pred cCCcHHHHHHHHHHhhhhcCCCcCchhHHHHHHhhhccCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCchHHHH
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDSR-IWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 920 (1017)
..|.+++|++.|...++ -.+|....|..-..++.+.++...|++-+... .++||.. -|..-..+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 35666666666666655 12223334444455555555555555444432 3444443 33333344444555555555
Q ss_pred HHHHHHhhCC
Q 001763 921 AAKKLIELEP 930 (1017)
Q Consensus 921 ~~~~~l~~~p 930 (1017)
.++.+.+++-
T Consensus 204 dl~~a~kld~ 213 (377)
T KOG1308|consen 204 DLALACKLDY 213 (377)
T ss_pred HHHHHHhccc
Confidence 5555555543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.62 E-value=2.3 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.052 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhhCC
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 902 ~~~ll~~~~~~g~~~~a~~~~~~~l~~~p 930 (1017)
|..++..+...|+++.|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444445555555555555555555555
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.53 E-value=4.7 Score=39.43 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=22.6
Q ss_pred CCchHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCcHHHHHHHHHH
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 913 g~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 959 (1017)
.+++....--+++++++|+..-+++.|++.......+++|+....+.
T Consensus 58 ~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 58 KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444444444445555544444445555544444555544444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 7e-13
Identities = 23/192 (11%), Positives = 58/192 (30%), Gaps = 6/192 (3%)
Query: 713 ALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALID 772
A R P + +L+ SL + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 773 MYAKCGDVKRSAQVFDEMAERN------YVISWNSMIVGFAKNGYAEDALKVFHEMKETQ 826
+ + + + + +N++++G+A+ G ++ + V +K+
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 827 AMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886
PD +++ L + + + +S G++ + A ++ R LK
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 887 EEFIEQLTFEPD 898
+ + P
Sbjct: 256 HKVKPTFSLPPQ 267
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 8e-09
Identities = 43/349 (12%), Positives = 103/349 (29%), Gaps = 35/349 (10%)
Query: 10 SPNPSPHSMLHYSSFSKLPSESTHLVSNPIYTHLLESCLQQCKQIKTRHMFDGSSQRLIR 69
+ M S K + V + + + CL+ C + ++ RL++
Sbjct: 42 QRLKAKLQMPFQSGEFKALTRRLQ-VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQ 100
Query: 70 ASITSRIIHAQSLKFGFGSKGLLG------NAIVDLYAKCGIANLAEKVFDRLEDR---- 119
+ + + G S+ L A LA + +
Sbjct: 101 EAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR 160
Query: 120 ---DILAWNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFAIVLSACSKS-MDVSYG 175
+ +N+++ ++++G+F+ + ++ + G P+ ++A L + D
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 176 RQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGA---VDLDTVSWTSMIAGY 232
+ + + G + + L+ + + +V L TS +
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280
Query: 233 VQAGLPEAAFELFEKMIKVGCVP-------DQVAFVTVINVCFNLGRLDEARELFAQMQN 285
V A ++ +K + + V V++V E + +
Sbjct: 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR-KTLK 339
Query: 286 PNVVAWNVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGIS 334
W + A+ K + V R +L L +
Sbjct: 340 TLRDQWEKAL---------CRALRETKNRLEREVYEGRFSLYPFLCLLD 379
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 3e-07
Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 307 AVNYFKRMRKAGVKSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLIN 366
A R+A L +L +LD + + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 367 MYAKCEKMESAKKVFDSLDER-------NAVLWNALLGGYSQNCYAHEVVDLFFAMKSSG 419
+++ A + + ++NA++ G+++ E+V + F +K +G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 420 FHADDFTYTSILSSCA 435
D +Y + L
Sbjct: 196 LTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 3e-07
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 566 SLIDMYVKCGFIGAAHKVLSCMPQR-------NVVSMNALIAGYAQN-NVEDAVVLYRGM 617
+ + + AH +L + + NA++ G+A+ ++ V + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 618 QTEGLSPNDITFTSLLDAC 636
+ GL+P+ +++ + L
Sbjct: 192 KDAGLTPDLLSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.0 bits (115), Expect = 9e-06
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 7/82 (8%)
Query: 463 NALVDMYAKSRALEEARKQFERIQNQ-------DNVSWNAIIVGYVQEGDVFEAFNMFRR 515
A + L A Q +NA+++G+ ++G E +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 516 MNLVGIVPDDVSSASILSACAN 537
+ G+ PD +S A+ L
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGR 212
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 4e-05
Identities = 18/129 (13%), Positives = 43/129 (33%), Gaps = 8/129 (6%)
Query: 415 MKSSGFHADDFTYTSILSSCACLEYLEMGRQL---HAVIIKNKLATNLYVGNALVDMYAK 471
+ + C + L + L H + + L + NA++ +A+
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 472 SRALEEARKQFERIQ----NQDNVSWNAIIVGYVQEGDVFEAFN-MFRRMNLVGIVPDDV 526
A +E ++ D +S+ A + ++ +M+ G+ +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 527 SSASILSAC 535
+A +LS
Sbjct: 238 FTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 1e-04
Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 11/233 (4%)
Query: 609 DAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIAL 668
A L + SP + LL G + + L L A
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL-AF 133
Query: 669 LSMYMNSKRNTDARLLFTEF------PNPKSTVLWTAVISGHAQNDSNYEALHFYREMRS 722
+ + + A L + ++ AV+ G A+ + E ++ ++
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 723 HNVLPDQATFVSVLRACAVLS-SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVK 781
+ PD ++ + L+ + G L + + L+ + +K
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 782 RSAQVFDEMAERNYV---ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD 831
+V + + ++ + ++ K+ +K Q + +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 4e-12
Identities = 100/607 (16%), Positives = 175/607 (28%), Gaps = 202/607 (33%)
Query: 8 ISSPNPSPHSMLHYSSFSKLPSESTHLVS-------NPIYTHLLESCLQQCKQ------- 53
I S + + F L S+ +V Y L+ + +Q
Sbjct: 55 IMSKDAVSGT---LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 54 -IKTRHMFDGSSQRLIRASITSRIIHAQSLKFGFGSKGLLG---NAIVDLY--AKCGIAN 107
I+ R +Q + +++ R+ L+ + LL V + G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVS-RLQPYLKLR-----QALLELRPAKNVLIDGVLGSGKTW 165
Query: 108 LAEKVFDRLEDRDILA-------WNSILSMYSKRGSFENVFKSFGLLCNRGGVPNGFTFA 160
+A V + W L++ S E V + L +
Sbjct: 166 VALDV---CLSYKVQCKMDFKIFW---LNL-KNCNSPETVLEMLQKLLYQ---------- 208
Query: 161 IVLSACSKSMDVSYGRQLHCHVIELG----FESSSFCKGALIDMYAKLNNVSDAR--RVF 214
I + S+S D S +L H I+ +S + L+ L NV +A+ F
Sbjct: 209 IDPNWTSRS-DHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAF 262
Query: 215 D------------GAVD-LDTVSWTSMIAGYVQAGL-PEAAFELFEKM--IKVGCVPDQV 258
+ D L + T + + L P+ L K + +P +V
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 259 -------------------------------AFVTVINVCFNLGRLDEARELFAQMQ--N 285
T+I N+ E R++F ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 286 PNV--------VAWNVMISGHAKRGYDAEA-VNYFKRMRKAGVKSSRSTLGSVLSGISSL 336
P+ + W +I D VN + + ST+ S+
Sbjct: 383 PSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQPKESTI--------SI 428
Query: 337 AALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALL 396
++ L V E + S+++ Y + +S + LD
Sbjct: 429 PSIYLELKVKLENEYA-------LHRSIVDHYNIPKTFDSDDLIPPYLD----------- 470
Query: 397 GGYSQNCYAH-----------EVVDLF--------F----------AMKSSGFHADDFT- 426
Y Y+H E + LF F A +SG +
Sbjct: 471 -QYF---YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 427 ---YTS-ILSSCACLE-----YLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEE 477
Y I + E L+ ++ +I +K T+L + AL M EE
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTDL-LRIAL--MAEDEAIFEE 582
Query: 478 ARKQFER 484
A KQ +R
Sbjct: 583 AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 4e-10
Identities = 103/820 (12%), Positives = 214/820 (26%), Gaps = 325/820 (39%)
Query: 176 RQLHCHVIELGFESSSFCKGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQA 235
C ++ S K + + + VS R+F + M+ +V+
Sbjct: 31 DNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEE 85
Query: 236 GL-PEAAFELFEKMIKVGCV---PDQVAFVTVINVCFNLGRLDEARELFAQMQNPNVVAW 291
L F L IK ++ + +N N +
Sbjct: 86 VLRINYKF-LMSP-IKTEQRQPSMMTRMYIEQRDRLYN--------------DNQVFAKY 129
Query: 292 NVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVL-----SGISSLAALDFGLIVH 346
NV R + + ++R+A + R ++ SG + +A +
Sbjct: 130 NV------SR------LQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVAL----DVCL 172
Query: 347 AEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYAH 406
+ ++ + ++ +N+ C +S + +L
Sbjct: 173 SYKVQCKMDFKIF----WLNL-KNC----------NSPETVLEMLQK------------- 204
Query: 407 EVVDLFFAMKSSGFHADDFTYTSILSSCACLEYLEMGRQLHAVIIKNKLATNLYVGNALV 466
L + + + D + L + L + L + Y N L+
Sbjct: 205 ----LLYQIDPNWTSRSDHSSNIKLRIHSIQAEL-----------RRLLKSKPYE-NCLL 248
Query: 467 DMYAKSRALEEARKQFERIQNQDNVSWNAIIVGYVQEGDVFEAFNMFRRMNLVGIVPDDV 526
+ NV NA + AFN
Sbjct: 249 VL--------------------LNV-QNA---------KAWNAFN--------------- 263
Query: 527 SSASILSACANIQGLPQGEQVHCFSVKTSLETSNIYVGSSLIDMYVKCGFIGAAHKVLSC 586
+ C K L T + D F+ AA
Sbjct: 264 --------------------LSC---KILLTTRF----KQVTD------FLSAAT----- 285
Query: 587 MPQRNVVSMNALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDG-PYKFHLG 645
+S++ + V+ ++ Y + + L + P L
Sbjct: 286 ---TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------EVLTTNP--RRLS 331
Query: 646 TQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNT------------DARLLFTE---FPN 690
+I D K T + R +F FP
Sbjct: 332 -----II---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 691 ----PKST--VLWTAVISGHAQNDSNYEALHFYREMRSHNVL---PDQATFVSVLRACAV 741
P ++W + + + ++ ++++ P ++T
Sbjct: 384 SAHIPTILLSLIW--------FDVIKSDVMVVVNKLHKYSLVEKQPKESTI--------- 426
Query: 742 LSSLRDGGEIHSLIFHTGYDLDEITG--SALIDMYAKCGDVKRSAQVFDEMA--ERNYVI 797
I S+ L+ +++D Y ++ ++ D + Y
Sbjct: 427 --------SIPSIYLELKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQY-- 472
Query: 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETM 857
+ S I G+ H L H R++ R +F
Sbjct: 473 -FYSHI------GH--------H-----------------LKNIEHPERMTLFRMVF--- 497
Query: 858 VSCHGIQPRVDH-------CACMVDLLGRWGFLKEAEEFI-------EQL-----TFEPD 898
+ ++ ++ H +++ L + LK + +I E+L F P
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLP- 553
Query: 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938
+I L+ C + D +R I L E+ + + +
Sbjct: 554 -KIEENLI--CSKYTDLLR--------IALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 5e-07
Identities = 94/686 (13%), Positives = 189/686 (27%), Gaps = 189/686 (27%)
Query: 78 HAQSLKFGFGSKGLLGNAIVDLYAKCGIANLAEK-VFDRLEDRDILAWNSILSMYSKRGS 136
H + F G I+ ++ + N K V D + IL+ I + + +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDA 60
Query: 137 FENVFKSFGLLCNRGGVPNGFTFAIVLSACSKSMDVSYG---RQLHCHVIELGFESSSFC 193
+ F L ++ +V + + ++Y + + + +
Sbjct: 61 VSGTLRLFWTLLSKQE-------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY- 112
Query: 194 KGALIDMYAKLNNVSDARRVFDGAVDLDTVSWTSMIAGYVQAGLPEAAFEL-------FE 246
I+ +L N + +VF VS L +A EL +
Sbjct: 113 ----IEQRDRLYNDN---QVFAK----YNVSRLQPYLK-----LRQALLELRPAKNVLID 156
Query: 247 KMIKVG--CVPDQVAFVTVINVCF-------NLGRLDEARELFAQMQN------PNVVAW 291
++ G V V + NL + + +Q PN W
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---W 213
Query: 292 NVMISGHAKRGYDAEAVNYFKRMRKAGVKSSRSTLGSVLSGISS---LAALDFG---LIV 345
+ ++ R L VL + + A + L+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILL- 270
Query: 346 HAEAIKQGLYSNVYVASSLINMYAKCEKMESAKKVFDSLDERNAVLWNALLGGYSQNCYA 405
V L ++ + DE ++L L
Sbjct: 271 --------TTRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSLLLKYL--DCRPQDLP 319
Query: 406 HE-------VVDLFFAMKSSGF-------HADDFTYTSILSSCACLEYLEMGRQLHAVII 451
E + + G H + T+I+ S L LE
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEP--------- 368
Query: 452 KNKLATNLYVGNALVDMYAKSRALEEARKQFER--IQNQD-NVS-------WNAIIVGYV 501
E RK F+R + ++ W +I
Sbjct: 369 ------------------------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---- 400
Query: 502 QEGDVFEAFNMFRRMNLVGIVPDDVSSASI----LSACANIQGLPQGEQVH-----CFSV 552
+ DV N + +LV P + S+ SI L ++ +H +++
Sbjct: 401 -KSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENEY---ALHRSIVDHYNI 455
Query: 553 KTSLETSNIYVGSSLIDMYVKCGFIG-------AAHKV---------LSCMPQR-NVVSM 595
+ ++ ++ +D Y IG ++ + Q+ S
Sbjct: 456 PKTFDSDDL--IPPYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 596 NALIAGYAQNNVEDAVVLYRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKK 655
+G N ++ + Y+ + ND + L++A F + + + K
Sbjct: 513 AWNASGSILNTLQQ-LKFYKPY----ICDNDPKYERLVNAIL---DFLPKIEENLICSK- 563
Query: 656 GLLFDDDFLHIALL----SMYMNSKR 677
D L IAL+ +++ + +
Sbjct: 564 ----YTDLLRIALMAEDEAIFEEAHK 585
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 9/124 (7%)
Query: 197 LIDMYAKLNNVSDARRVFDGAVDLD---TVSWTSMIAGYVQAGLPEAAFELFEKMIKVGC 253
L ++Y + + +A + A+ L + ++ A V AG E A + + ++
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN- 131
Query: 254 VPDQV-AFVTVINVCFNLGRLDEARELFAQM--QNPN-VVAWNVMISGHAKRGYDAEAVN 309
PD + N+ LGRL+EA+ + + PN VAW+ + +G A++
Sbjct: 132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 310 YFKR 313
+F++
Sbjct: 191 HFEK 194
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 9/116 (7%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 177 QLHCHVIELGFESSSFCK------GALIDMYAKLNNVSDARRVFDGAVDLDTVS----WT 226
+ H ++ +E++ + + DM +A +++ A+ +
Sbjct: 44 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 103
Query: 227 SMIAGYVQAGLPEAAFELFEKMIKVGCVPDQVAFVTVINVCFNLGRLDEARELFAQ 282
+ E ++ +++ + + + ++ + + R +F +
Sbjct: 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1017 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 6e-07
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 9/184 (4%)
Query: 770 LIDMYAKCGDVKRSAQVFDEMAERNYVI--SWNSMIVGFAKNGYAEDALKVFHEMKETQA 827
L ++ + R+ + + ++ + + G + A+ + E Q
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ- 267
Query: 828 MPDDVTFLGVL-TACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886
P L A G V+E + T + D + ++ G ++EA
Sbjct: 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEA 324
Query: 887 EEFIEQ-LTFEPDSRIWTTLLGACGVHRDDIRGRLAA-KKLIELEPENPSPYVQLSNIYA 944
+ L P+ + L + + ++ L K+ I + P Y + N
Sbjct: 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Query: 945 ALGN 948
+ +
Sbjct: 385 EMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 1e-05
Identities = 26/188 (13%), Positives = 63/188 (33%), Gaps = 11/188 (5%)
Query: 770 LIDMYAKCGDVKRSAQVFDEMAERN--YVISWNSMIVGFAKNGYAEDALKVFHEMKETQA 827
L ++ G++ + F++ + ++ ++ ++ + + A+ +
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 828 MPDDVTF-LGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKE 885
V L G + + + +QP D + + L G + E
Sbjct: 235 NHAVVHGNLAC--VYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAE 289
Query: 886 AEEFIEQ-LTFEPDSRIWTTLLGACGVHRDDIRGRLAA-KKLIELEPENPSPYVQLSNIY 943
AE+ L P L + +I + +K +E+ PE + + L+++
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349
Query: 944 AALGNWNE 951
G E
Sbjct: 350 QQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 49/364 (13%), Positives = 113/364 (31%), Gaps = 20/364 (5%)
Query: 265 NVCFNLGRLDEARELFAQM--QNP-NVVAWNVMISGHAKRGYDAEAVNYFKRMRKA--GV 319
+ + G + A Q+ Q P N ++ S H + + ++ K +
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 320 KSSRSTLGSVLSGISSLAALDFGLIVHAEAIKQGLYSNVYVASSLINMYAKCEKMESAKK 379
+ S LG+V L + + +A++L+ +++
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 380 VFDSLDERNAVLWNALLGGYSQNCYAHEVVDLFFAMKSSGFHADDFTYTSILSSC-ACLE 438
+ V + G +K+ + S L
Sbjct: 127 ALQYNPDLYCVRSD---LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 439 YLEMGRQLHAVIIKNKLATNLYVGNALVDMYAKSRALEEARKQFER---IQNQDNVSWNA 495
+ + + L L ++ ++R + A + R + V
Sbjct: 184 EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242
Query: 496 IIVGYVQEGDVFEAFNMFRRMNLVGIVPDDVSSASILSACANIQGLPQGEQVHCFSVKTS 555
+ Y ++G + A + +RR + + P + L+ +G E C++
Sbjct: 243 LACVYYEQGLIDLAIDTYRR--AIELQPHFPDAYCNLANALKEKGSVA-EAEDCYNTALR 299
Query: 556 LETSNIYVGSSLIDMYVKCGFIGAA----HKVLSCMPQRNVVSMNALIAGYAQNNVEDAV 611
L ++ ++L ++ + G I A K L P+ N Q +++A+
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
Query: 612 VLYR 615
+ Y+
Sbjct: 360 MHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1017 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.8 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.52 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.51 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.51 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.45 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.39 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.31 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.1 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.04 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.01 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.0 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.97 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.9 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.89 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.69 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.67 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.52 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.38 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.37 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.29 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.26 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.81 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.51 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.07 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.03 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.57 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.08 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.73 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-27 Score=177.85 Aligned_cols=239 Identities=11% Similarity=0.080 Sum_probs=188.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 01379914799999999978988679769999999832176898999999999859998740685997678840998989
Q 001763 704 HAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRS 783 (1017)
Q Consensus 704 ~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 783 (1017)
....+....+...+.+..... +-+...+..+...+...++++.|...++.+++..+. +...+..++.+|...|++++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A 222 (388)
T d1w3ba_ 145 LKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCHHHH
T ss_conf 211000135678888740258-610689986363010247199999999999984946-499999971552200529999
Q ss_pred HHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999884168--884687999999998389978999999998987999996-76999999704589689999999993642
Q 001763 784 AQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSC 860 (1017)
Q Consensus 784 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~ 860 (1017)
...++.... +.....|..++..+...|++++|+..|+++++ ..|+. ..+..+..++...|++++|...++.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 300 (388)
T d1w3ba_ 223 VAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999985777554799999999999987899999999999998--49998999999999999748799999999865404
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 199767016788998610369979999999868-9999-99989999999971288039999999998508999701797
Q 001763 861 HGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQ 938 (1017)
Q Consensus 861 ~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~ 938 (1017)
.+.....+..++.++.+.|++++|++.+++. ...| +...|..++.++...|++++|+..++++++++|+++.++..
T Consensus 301 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 378 (388)
T d1w3ba_ 301 --CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf --873001015799999987899999999999998688989999999999998599999999999999709998999999
Q ss_pred HHHHHHHCCC
Q ss_conf 8778772699
Q 001763 939 LSNIYAALGN 948 (1017)
Q Consensus 939 l~~~y~~~g~ 948 (1017)
++++|.+.||
T Consensus 379 lg~~~~~~~D 388 (388)
T d1w3ba_ 379 MGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHCCC
T ss_conf 9999998589
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.9e-25 Score=167.22 Aligned_cols=298 Identities=12% Similarity=0.054 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88658998899988706991889999842999--9982130013210013799147999999999789886797699999
Q 001763 659 FDDDFLHIALLSMYMNSKRNTDARLLFTEFPN--PKSTVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVL 736 (1017)
Q Consensus 659 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll 736 (1017)
|.+...+..++.+|.+.|++++|...+..... +.....+..........+....+........... ...........
T Consensus 64 p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 142 (388)
T d1w3ba_ 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLG 142 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
T ss_conf 99899999999996420002222222221211222222222222222222222222222211122222-22222222222
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 99832176898999999999859998740685997678840998989999884168--8846879999999983899789
Q 001763 737 RACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAED 814 (1017)
Q Consensus 737 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 814 (1017)
......+....+...........+. +...+..++..+...|++++|...+++... |+....|..++..+...|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 221 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 2221100013567888874025861-068998636301024719999999999998494649999997155220052999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 9999999898799999676999999704589689999999993642199767-016788998610369979999999868
Q 001763 815 ALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 815 A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
|+..+++....+ ..+...+..+...+...|++++|...|+++++ +.|+ ...+..++.++...|+.++|.+.++..
T Consensus 222 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 297 (388)
T d1w3ba_ 222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999857775-54799999999999987899999999999998---49998999999999999748799999999865
Q ss_pred C--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9--99999989999999971288039999999998508999701797877877269927999999999976
Q 001763 894 T--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 894 ~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 962 (1017)
. .+.+...+..+...+...|+.+.|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 40487300101579999998789999999999999868898999999999999859999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-18 Score=125.30 Aligned_cols=226 Identities=13% Similarity=0.050 Sum_probs=118.7
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
Q ss_conf 32100137991479999999997898867-97699999998321768989999999998599987406859976788409
Q 001763 700 VISGHAQNDSNYEALHFYREMRSHNVLPD-QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG 778 (1017)
Q Consensus 700 li~~~~~~g~~~~A~~~~~~m~~~~~~pd-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 778 (1017)
.+..+.+.|++++|+..|++..+. .|+ ..+|..+..++...|+++.|...+..+++..+. +...+..++..|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCC
T ss_conf 999999859999999999999986--8998999999999999837758899999851002222-2222222222222222
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHCC
Q ss_conf 9898999988416888468799999999838997899999999898799999676----------------999999704
Q 001763 779 DVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVT----------------FLGVLTACS 842 (1017)
Q Consensus 779 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~~~----------------~~~l~~a~~ 842 (1017)
++++|.+.++ ++... .|+... ....+..+.
T Consensus 102 ~~~~A~~~~~--------------------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (323)
T d1fcha_ 102 LQRQACEILR--------------------------------DWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 147 (323)
T ss_dssp CHHHHHHHHH--------------------------------HHHHT--STTTGGGCC---------------CTTHHHH
T ss_pred CCCCCCCCHH--------------------------------HHHHH--CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 1121110002--------------------------------67773--6106788876640000000100001478888
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 589689999999993642199767016788998610369979999999868-9999-99989999999971288039999
Q 001763 843 HAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRL 920 (1017)
Q Consensus 843 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 920 (1017)
..+.++++...|.++++..+..++...+..++.++.+.|++++|++.+++. ...| +...|..++..+...|+.+.|+.
T Consensus 148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 227 (323)
T d1fcha_ 148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA 227 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHH
T ss_conf 76579999999999999713012221110368888888877550021112222222221110133301221111013788
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 999998508999701797877877269927999999999976
Q 001763 921 AAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 921 ~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 962 (1017)
.++++++++|+++.++..+|.+|...|++++|.+.+++..+.
T Consensus 228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 877899884324999999999999878999999999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.3e-17 Score=119.67 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 997899999999898799-99967699999970458968999999999364219976-7016788998610369979999
Q 001763 810 GYAEDALKVFHEMKETQA-MPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFLKEAE 887 (1017)
Q Consensus 810 g~~~~A~~~~~~~~~~~~-~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~~eA~ 887 (1017)
+...+|.+.+.++.+... .++...+..+...+...|++++|+..|++.+. ..| +...+..++.+|.+.|++++|.
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 226 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAV 226 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---CCCCCCCCHHHHHHCCCCCCCCHHHH
T ss_conf 579999999999999713012221110368888888877550021112222---22222111013330122111101378
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHCCCCHHHH
Q ss_conf 999868-9999-9998999999997128803999999999850899970179-----------7877877269927999
Q 001763 888 EFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYV-----------QLSNIYAALGNWNEVN 953 (1017)
Q Consensus 888 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~-----------~l~~~y~~~g~~~~A~ 953 (1017)
+.++++ ...| +...|..++.++...|+.++|+..++++++++|++..++. .+...+...|+++.+.
T Consensus 227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 8877899884324999999999999878999999999999970975700112459999999999999999829889999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.3e-13 Score=92.81 Aligned_cols=220 Identities=9% Similarity=0.043 Sum_probs=140.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-HHHHHHHHHHCCC--CCHHHHHHHHHHHHHH
Q ss_conf 999999983217689899999999985999874068599767884099-8989999884168--8846879999999983
Q 001763 732 FVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGD-VKRSAQVFDEMAE--RNYVISWNSMIVGFAK 808 (1017)
Q Consensus 732 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 808 (1017)
+..+...+...+..++|...++.+++.+|. +..+|+..+.++...|+ +++|+..++...+ |+...+|+.....+..
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999588669999999999987988-7699999999999837679999999999998877422689887588885
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCC----
Q ss_conf 89978999999998987999996-76999999704589689999999993642199767-0167889986103699----
Q 001763 809 NGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGF---- 882 (1017)
Q Consensus 809 ~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~---- 882 (1017)
.|++++|++.++++++ ..|+. ..+..+...+.+.|++++|+..|+++++ +.|+ ...|..+..++.+.+.
T Consensus 125 l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 125 LRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HCCHHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 0537889988755543--2100468899887788888866789999999998---7974499998899999874563102
Q ss_pred --HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHC--CCCHHHHH
Q ss_conf --79999999868-9999-9998999999997128803999999999850899970--179787787726--99279999
Q 001763 883 --LKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS--PYVQLSNIYAAL--GNWNEVNT 954 (1017)
Q Consensus 883 --~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~--~~~~l~~~y~~~--g~~~~A~~ 954 (1017)
+++|++.+.++ ...| +...|..+...+.. ...+.+...+++++++.|.... .+..++.+|... ++.+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 354776799999998498856999998779886-2718899999999972877578999999999999998358787999
Q ss_pred HHHH
Q ss_conf 9999
Q 001763 955 LRRE 958 (1017)
Q Consensus 955 ~~~~ 958 (1017)
..++
T Consensus 279 ~~~k 282 (315)
T d2h6fa1 279 ILNK 282 (315)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=1.2e-14 Score=101.50 Aligned_cols=231 Identities=9% Similarity=-0.033 Sum_probs=158.1
Q ss_pred CCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCCHH
Q ss_conf 3799147999999999789886-797699999998321--768989999999998599987406-859976788409989
Q 001763 706 QNDSNYEALHFYREMRSHNVLP-DQATFVSVLRACAVL--SSLRDGGEIHSLIFHTGYDLDEIT-GSALIDMYAKCGDVK 781 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~~p-d~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~ 781 (1017)
..|+.++|+.++++.... .| +...|.....++... ++.+++...+..+....+. +... +......+...|.++
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCCCCH
T ss_conf 877899999999999986--888679898864899884304289999999999855921-21111057899987445528
Q ss_pred HHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999884168--8846879999999983899789999999989879999967699999970458968999999999364
Q 001763 782 RSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 782 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
+|...++.+.. +....+|+.+...+...|++++|...+++..+ ..|+... ....+...+..+++...+...+.
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999998871898799999999999982688989998877677--6899999---99999882441488999998877
Q ss_pred HCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 2199767016788998610369979999999868-999999-98999999997128803999999999850899970179
Q 001763 860 CHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TFEPDS-RIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYV 937 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~ 937 (1017)
..++....+..++..+...|+.++|.+.+.+. ...|+. ..|..++.++...|+.++|...++++++++|.+...|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf --186605678879999999866999999999887629137999999999998789999999999999987966399999
Q ss_pred HHHHHHHHC
Q ss_conf 787787726
Q 001763 938 QLSNIYAAL 946 (1017)
Q Consensus 938 ~l~~~y~~~ 946 (1017)
.|++.+...
T Consensus 315 ~L~~~~~~e 323 (334)
T d1dcea1 315 DLRSKFLLE 323 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999998676
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.4e-13 Score=93.62 Aligned_cols=225 Identities=11% Similarity=-0.058 Sum_probs=118.8
Q ss_pred CCCCCHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 37991479999999997898-867--976999999983217689899999999985999874068599767884099898
Q 001763 706 QNDSNYEALHFYREMRSHNV-LPD--QATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKR 782 (1017)
Q Consensus 706 ~~g~~~~A~~~~~~m~~~~~-~pd--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 782 (1017)
...+.+.++.-+++...... .+. ..++..+..++...|++++|...++.+++..+. ++.++..++.+|.+.|++++
T Consensus 11 ~~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 11 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHCHHHHHHHHHHH
T ss_conf 05799999999999987633699999999999999999879999999999985434999-88999600427888777887
Q ss_pred HHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999884168--884687999999998389978999999998987999996-7699999970458968999999999364
Q 001763 783 SAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 783 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
|+..|+++.+ |+...+|..++.+|...|++++|+..+++.++. .|+. .....+...+...+..+....+......
T Consensus 90 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 523446899987611115888999999876679999999999865--300078889999999885358789999987640
Q ss_pred HCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 219976701678899861036---9979999999868-99999-998999999997128803999999999850899970
Q 001763 860 CHGIQPRVDHCACMVDLLGRW---GFLKEAEEFIEQL-TFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 860 ~~~~~p~~~~~~~l~~~l~~~---g~~~eA~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
..+....+......+... +..+++...+... ...|+ ...|..++..+...|+.+.|...+++++..+|++..
T Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 168 ---SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp ---SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf ---31444345577888888777778999999999866408450999999999999878999999999999983997799
Q ss_pred HH
Q ss_conf 17
Q 001763 935 PY 936 (1017)
Q Consensus 935 ~~ 936 (1017)
.|
T Consensus 245 ~~ 246 (259)
T d1xnfa_ 245 EH 246 (259)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=9.6e-12 Score=83.85 Aligned_cols=27 Identities=7% Similarity=-0.124 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 999999997128803999999999850
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIEL 928 (1017)
Q Consensus 902 ~~~l~~~~~~~~~~~~a~~~~~~~l~~ 928 (1017)
|..+...+...|+.+.|...+++++++
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999999999878999999999999997
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.4e-13 Score=93.67 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=124.0
Q ss_pred EHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 001321001379914799999999978988679-76999999983217-6898999999999859998740685997678
Q 001763 697 WTAVISGHAQNDSNYEALHFYREMRSHNVLPDQ-ATFVSVLRACAVLS-SLRDGGEIHSLIFHTGYDLDEITGSALIDMY 774 (1017)
Q Consensus 697 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 774 (1017)
++.+...+.+.+..++|+++++++.+. .|+. ..|.....++...+ ++++|...++.+++..+. +..++..++.++
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 999999999588669999999999987--98876999999999998376799999999999988774-226898875888
Q ss_pred HHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCC------CC
Q ss_conf 840998989999884168--884687999999998389978999999998987999996-769999997045------89
Q 001763 775 AKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSH------AG 845 (1017)
Q Consensus 775 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~------~g 845 (1017)
.+.|++++|+..++.+.+ |.....|..++..+...|++++|++.++++++. .|+. ..|..+...+.. .+
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 85053788998875554321004688998877888888667899999999987--9744999988999998745631023
Q ss_pred CHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHH--CCCCHHH
Q ss_conf 689999999993642199767-016788998610369979999999868----999999989999999971--2880399
Q 001763 846 RVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQL----TFEPDSRIWTTLLGACGV--HRDDIRG 918 (1017)
Q Consensus 846 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~----~~~p~~~~~~~l~~~~~~--~~~~~~a 918 (1017)
.+++|...+.++++ ..|+ ...+..+..++...| .+++.+.++.. +...+...+..+...+.. .++.+.+
T Consensus 201 ~~~~ai~~~~~al~---~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 201 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 54776799999998---49885699999877988627-188999999999728775789999999999999983587879
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999850
Q 001763 919 RLAAKKLIEL 928 (1017)
Q Consensus 919 ~~~~~~~l~~ 928 (1017)
...+++++++
T Consensus 277 ~~~~~ka~~l 286 (315)
T d2h6fa1 277 EDILNKALEL 286 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.7e-11 Score=82.33 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHH------CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999997128803999999999850------8999701797877877269927999999999
Q 001763 903 TTLLGACGVHRDDIRGRLAAKKLIEL------EPENPSPYVQLSNIYAALGNWNEVNTLRREM 959 (1017)
Q Consensus 903 ~~l~~~~~~~~~~~~a~~~~~~~l~~------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 959 (1017)
.++..++...|+.+.|...++++++. .|.....+..++.+|...|++++|.+.+++.
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999987587999999999999887642667479999999999999878999999999999
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=8e-13 Score=90.45 Aligned_cols=215 Identities=12% Similarity=0.034 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 89899999999985999---8740685997678840998989999884168--884687999999998389978999999
Q 001763 745 LRDGGEIHSLIFHTGYD---LDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVF 819 (1017)
Q Consensus 745 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 819 (1017)
.+.+...++++...... ....++..++.+|.+.|++++|+..|++... |+...+|+.++.+|...|++++|++.|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999999999876336999999999999999998799999999999854349998899960042788877788752344
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHCC-CC
Q ss_conf 998987999996-76999999704589689999999993642199767-0167889986103699799999998689-99
Q 001763 820 HEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-VDHCACMVDLLGRWGFLKEAEEFIEQLT-FE 896 (1017)
Q Consensus 820 ~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~l~~~g~~~eA~~~~~~~~-~~ 896 (1017)
+++++ +.|+. ..+..++.++...|++++|...|+..++. .|+ ......+...+.+.+..+.+..+..... ..
T Consensus 95 ~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 95 DSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68999--87611115888999999876679999999999865---30007888999999988535878999998764031
Q ss_pred CCHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999899999999----71288039999999998508999701797877877269927999999999976994
Q 001763 897 PDSRIWTTLLGAC----GVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 897 p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 965 (1017)
+....+. +...+ ...+..+.+...........|.....+..+|.+|...|++++|...+++.....+.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 4443455-77888888777778999999999866408450999999999999878999999999999983997
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=2.7e-10 Score=75.02 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=123.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 6898999999999859998740685997678840998989999884168---8846879999999983899789999999
Q 001763 744 SLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE---RNYVISWNSMIVGFAKNGYAEDALKVFH 820 (1017)
Q Consensus 744 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 820 (1017)
..+.+..+++..++..++.+...+...+..+.+.|+++.|..+++++.. .+....|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 45999999999998749987999999999998613389999999999987157869999999999998278688999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHH-CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC----C
Q ss_conf 98987999996-769999997-04589689999999993642199767016788998610369979999999868----9
Q 001763 821 EMKETQAMPDD-VTFLGVLTA-CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL----T 894 (1017)
Q Consensus 821 ~~~~~~~~pd~-~~~~~l~~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~----~ 894 (1017)
++++.+ |+. ..+...+.. +...|+.+.|..+|+.++..+ +.+...+...++.+.+.|+.++|..++++. +
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999808--88679999999999876557789999999999861--00388999999999986986899999999998278
Q ss_pred CCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999--998999999997128803999999999850899970
Q 001763 895 FEPD--SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPS 934 (1017)
Q Consensus 895 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~ 934 (1017)
..|+ ..+|...+.....+|+.+.+..+.+++.++.|+...
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 986899999999999999849999999999999987711022
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=4.6e-13 Score=91.87 Aligned_cols=210 Identities=6% Similarity=-0.092 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--CHHHHHHHHHHCCC--CCHHHHHH-HHHHHHHHCCCHHHHHH
Q ss_conf 768989999999998599987406859976788409--98989999884168--88468799-99999983899789999
Q 001763 743 SSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCG--DVKRSAQVFDEMAE--RNYVISWN-SMIVGFAKNGYAEDALK 817 (1017)
Q Consensus 743 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~~~~~~-~l~~~~~~~g~~~~A~~ 817 (1017)
+.++++...++.+.+..+. +...+..++.++...+ ++++|...++++.. ++....|. .....+...+..++|+.
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 7899999999999986888-679898864899884304289999999999855921211110578999874455289999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC-CC
Q ss_conf 99998987999996-76999999704589689999999993642199767016788998610369979999999868-99
Q 001763 818 VFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQL-TF 895 (1017)
Q Consensus 818 ~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~-~~ 895 (1017)
.++++++. .|+. ..+..+..++...|++++|...++.... +.|.. ......+...+..+++...+.+. ..
T Consensus 166 ~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 166 FTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHC--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99998871--898799999999999982688989998877677---68999---99999998824414889999988771
Q ss_pred CC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99-9998999999997128803999999999850899970179787787726992799999999997
Q 001763 896 EP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 896 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 961 (1017)
.| +...+..++..+...++.+.|...+.++++.+|.+..++..++++|...|++++|.+.+++..+
T Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 238 RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8660567887999999986699999999988762913799999999999878999999999999998
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=1e-09 Score=71.59 Aligned_cols=183 Identities=8% Similarity=0.043 Sum_probs=110.2
Q ss_pred HCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHCCCCCCHHHH
Q ss_conf 40998989999884168---884687999999998389978999999998987999996--7699999970458968999
Q 001763 776 KCGDVKRSAQVFDEMAE---RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD--VTFLGVLTACSHAGRVSEG 850 (1017)
Q Consensus 776 ~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~--~~~~~l~~a~~~~g~~~~a 850 (1017)
..+..++|..++++... +.....|...+..+...|+.++|..+|+++++. .|.. ..+...+..+...|..+.|
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~--~~~~~~~~w~~~~~~~~~~~~~~~a 153 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 10245999999999998749987999999999998613389999999999987--1578699999999999982786889
Q ss_pred HHHHHHHHHHCCCCC-CCHHHHHHHHH-HHCCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999364219976-70167889986-103699799999998689--99999989999999971288039999999998
Q 001763 851 RQIFETMVSCHGIQP-RVDHCACMVDL-LGRWGFLKEAEEFIEQLT--FEPDSRIWTTLLGACGVHRDDIRGRLAAKKLI 926 (1017)
Q Consensus 851 ~~~~~~m~~~~~~~p-~~~~~~~l~~~-l~~~g~~~eA~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~l 926 (1017)
..+|+.+++ ..| +...+...+.. +...|..+.|..+++.+. .+.+...|..++..+..+|+.+.|+.++++++
T Consensus 154 r~i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 154 RMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999998---08886799999999998765577899999999998610038899999999998698689999999999
Q ss_pred HHCCCCCC----HHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 50899970----17978778772699279999999999769
Q 001763 927 ELEPENPS----PYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 927 ~~~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~~~~~~ 963 (1017)
+..|.++. .+......-...|+.+.+..+.+++.+.-
T Consensus 231 ~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 82789868999999999999998499999999999999877
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2e-11 Score=81.91 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 69999999985
Q 001763 139 NVFKSFGLLCN 149 (1017)
Q Consensus 139 ~a~~~~~~m~~ 149 (1017)
.+...++...+
T Consensus 67 ~~ie~~r~~~k 77 (497)
T d1ya0a1 67 NQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHCC
T ss_conf 99999998561
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=4.9e-09 Score=67.37 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=9.0
Q ss_pred HCCCCHHHHHHHHHHHHHCC
Q ss_conf 12880399999999985089
Q 001763 911 VHRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 911 ~~~~~~~a~~~~~~~l~~~p 930 (1017)
..|+.+.|...++++++++|
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC--
T ss_pred HHCCHHHHHHHHHHHHHHCC
T ss_conf 84659999999999997597
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.01 E-value=4.3e-07 Score=55.57 Aligned_cols=217 Identities=13% Similarity=0.041 Sum_probs=104.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH----CC
Q ss_conf 83217689899999999985999874068599767884----09989899998841688846879999999983----89
Q 001763 739 CAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAK----CGDVKRSAQVFDEMAERNYVISWNSMIVGFAK----NG 810 (1017)
Q Consensus 739 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g 810 (1017)
....+++++|.+.++...+.| +......|+.+|.. ..+...|...+......+....+..+...+.. .+
T Consensus 12 ~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~ 88 (265)
T d1ouva_ 12 SYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ 88 (265)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCH
T ss_conf 998779999999999999789---99999999999980999605699998750122211111123135012243211212
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH----CCCCHH
Q ss_conf 978999999998987999996769999997--04589689999999993642199767016788998610----369979
Q 001763 811 YAEDALKVFHEMKETQAMPDDVTFLGVLTA--CSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLG----RWGFLK 884 (1017)
Q Consensus 811 ~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~----~~g~~~ 884 (1017)
+.+.|...+++..+.|.. ........... .........+...+..... ......+..+...+. ......
T Consensus 89 ~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~ 163 (265)
T d1ouva_ 89 NTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLK 163 (265)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 367798887655432146-68876343323787331015778887555200----1110104455556406887433422
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCHHHHHHH
Q ss_conf 999999868999999989999999971----2880399999999985089997017978778772----69927999999
Q 001763 885 EAEEFIEQLTFEPDSRIWTTLLGACGV----HRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA----LGNWNEVNTLR 956 (1017)
Q Consensus 885 eA~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~ 956 (1017)
.+..+++...-..+...+..++..+.. ..|.+.|...++++.+.+ ++.+++.|+.+|.. ..+.++|.+.+
T Consensus 164 ~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~ 241 (265)
T d1ouva_ 164 KALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENF 241 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHH
T ss_pred CCHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 0001221132322223322113121267654310344454676653036--89999999999983999761899999999
Q ss_pred HHHHHCCCC
Q ss_conf 999976994
Q 001763 957 REMREKGVK 965 (1017)
Q Consensus 957 ~~~~~~~~~ 965 (1017)
++.-+.|.+
T Consensus 242 ~kAa~~g~~ 250 (265)
T d1ouva_ 242 KKGCKLGAK 250 (265)
T ss_dssp HHHHHHTCH
T ss_pred HHHHHCCCH
T ss_conf 999987699
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1.1e-08 Score=65.21 Aligned_cols=140 Identities=7% Similarity=-0.058 Sum_probs=106.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHH
Q ss_conf 97678840998989999884168884687999999998389978999999998987999996-76999999704589689
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVS 848 (1017)
Q Consensus 770 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~ 848 (1017)
.+..+...|+++.|++.|..+..++.. .|..++.+|...|++++|++.|++.++ +.|+. ..|..+..+|.+.|+++
T Consensus 11 ~g~~~~~~~d~~~Al~~~~~i~~~~~~-~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 11 EGVLAADKKDWKGALDAFSAVQDPHSR-ICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 999999877999999999864898899-999999999985891467878999999--85523466788999998542499
Q ss_pred HHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999999364219976701-678899861036997999999986899999-9989999999971288039999999998
Q 001763 849 EGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFLKEAEEFIEQLTFEPD-SRIWTTLLGACGVHRDDIRGRLAAKKLI 926 (1017)
Q Consensus 849 ~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~l 926 (1017)
+|...|++.+.. .+.+.. .|..+.. ....+ ..++.+++.++...|+++.|...+++++
T Consensus 88 ~A~~~~~kAl~~--~~~n~~~~~~~~~~------------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 88 LAIKDLKEALIQ--LRGNQLIDYKILGL------------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHHT--TTTCSEEECGGGTB------------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCCHHHHHHHHH------------------HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999986--72673678998665------------------4363058899999999999789999999999998
Q ss_pred HHCCCC
Q ss_conf 508999
Q 001763 927 ELEPEN 932 (1017)
Q Consensus 927 ~~~p~~ 932 (1017)
++.|+.
T Consensus 148 ~~~~~~ 153 (192)
T d1hh8a_ 148 SMKSEP 153 (192)
T ss_dssp TTCCSG
T ss_pred HCCCCC
T ss_conf 369980
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.97 E-value=2.1e-09 Score=69.59 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 40685997678840998989999884168--884687999999998389978999999998987999996-769999997
Q 001763 764 EITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTA 840 (1017)
Q Consensus 764 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a 840 (1017)
.......+..|.+.|++++|+..|++... |+....|..++.+|...|++++|+..|+++++ +.|+. ..|..++.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 999999999999869999999999999985999899998178987410000012478888887--188738999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 0458968999999999364
Q 001763 841 CSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 841 ~~~~g~~~~a~~~~~~m~~ 859 (1017)
|...|++++|...|+++++
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
T ss_conf 9987999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.5e-08 Score=63.08 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 79787787726992799999999997
Q 001763 936 YVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 936 ~~~l~~~y~~~g~~~~A~~~~~~~~~ 961 (1017)
+..++.+|...|++++|.+..++..+
T Consensus 123 ~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 123 LYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999997899999999999983
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.93 E-value=2.5e-08 Score=63.03 Aligned_cols=127 Identities=9% Similarity=-0.032 Sum_probs=53.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC----C-CH---HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHC----CCCCCH-H
Q ss_conf 85997678840998989999884168----8-84---6879999999983-89978999999998987----999996-7
Q 001763 767 GSALIDMYAKCGDVKRSAQVFDEMAE----R-NY---VISWNSMIVGFAK-NGYAEDALKVFHEMKET----QAMPDD-V 832 (1017)
Q Consensus 767 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~---~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~----~~~pd~-~ 832 (1017)
+..++.+|.+.|++++|...+++... . +. ...+..++..|.. .|++++|++.++++.+. +..+.. .
T Consensus 80 ~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~ 159 (290)
T d1qqea_ 80 YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK 159 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999980885888999997667765325320589999998886764787899998899999999873376033346
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-----CHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 6999999704589689999999993642199767-----016788998610369979999999868
Q 001763 833 TFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPR-----VDHCACMVDLLGRWGFLKEAEEFIEQL 893 (1017)
Q Consensus 833 ~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~l~~~g~~~eA~~~~~~~ 893 (1017)
++..++..+...|++++|...|+++.......+. ...+...+.++...|+.+.|...+++.
T Consensus 160 ~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 160 CFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 889999999981739999999999998681332455569999999999999846599999999999
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.5e-08 Score=63.06 Aligned_cols=121 Identities=7% Similarity=0.009 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 7999999998389978999999998987999996-769999997045896899999999936421997670167889986
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDL 876 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 876 (1017)
.+...++.|.+.|++++|+..|+++++ +.|+. ..+..+..+|...|++++|...|+++++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~----------------- 72 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE----------------- 72 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-----------------
T ss_conf 999999999995899999998660211--0001133324567888740542128888999998-----------------
Q ss_pred HHCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HCCCCHHHH
Q ss_conf 103699799999998689999-99989999999971288039999999998508999701797877877--269927999
Q 001763 877 LGRWGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA--ALGNWNEVN 953 (1017)
Q Consensus 877 l~~~g~~~eA~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~--~~g~~~~A~ 953 (1017)
..| +...|..++.++...|++++|...++++++++|.++.++..+..+.. ..+.+++|.
T Consensus 73 ------------------~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~ 134 (159)
T d1a17a_ 73 ------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 134 (159)
T ss_dssp ------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------------------75446687799999999949999999989999872999799999999999999989899997
Q ss_pred HH
Q ss_conf 99
Q 001763 954 TL 955 (1017)
Q Consensus 954 ~~ 955 (1017)
..
T Consensus 135 ~~ 136 (159)
T d1a17a_ 135 AG 136 (159)
T ss_dssp HH
T ss_pred HC
T ss_conf 57
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=4.8e-09 Score=67.43 Aligned_cols=97 Identities=7% Similarity=-0.099 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHH
Q ss_conf 679769999999832176898999999999859998740685997678840998989999884168--884687999999
Q 001763 727 PDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIV 804 (1017)
Q Consensus 727 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 804 (1017)
|+...+......+...|++++|...+..++...+. ++..+..++.+|.+.|++++|+..++.... |+...+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 64999999999999869999999999999985999-89999817898741000001247888888718873899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHH
Q ss_conf 99838997899999999898
Q 001763 805 GFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 805 ~~~~~g~~~~A~~~~~~~~~ 824 (1017)
+|...|++++|+..|+++++
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
T ss_conf 99987999999999999987
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=9.1e-08 Score=59.68 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99899999999712880399999999985089997017978778772699279999999999
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 899 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 960 (1017)
+..|..++.++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 98 (117)
T d1elwa_ 37 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 13430001101100001121001346777402202677889999998127999999999999
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=7e-08 Score=60.36 Aligned_cols=107 Identities=17% Similarity=0.122 Sum_probs=68.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 9999998389978999999998987999996-769999997045896899999999936421997670167889986103
Q 001763 801 SMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGR 879 (1017)
Q Consensus 801 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~ 879 (1017)
.-+..+...|++++|+..|+++++. .|+. ..+..+..++...|++++|+..++.+++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------------------- 65 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-------------------- 65 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHH--------------------
T ss_conf 9999999969999999999998861--996013430001101100001121001346777--------------------
Q ss_pred CCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 699799999998689999-99989999999971288039999999998508999701797877877
Q 001763 880 WGFLKEAEEFIEQLTFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 880 ~g~~~eA~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
..| ++..|..++.++...|+++.|+..++++++++|+++.++..++++-.
T Consensus 66 ---------------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 66 ---------------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp ---------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ---------------HCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf ---------------402202677889999998127999999999999849898999999997838
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=7.2e-08 Score=60.30 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCH
Q ss_conf 7678840998989999884168--884687999999998389978999999998987999996-7699999970458968
Q 001763 771 IDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRV 847 (1017)
Q Consensus 771 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~ 847 (1017)
+..|.+.|++++|+..|++... |+....|..++.+|...|++++|+..|+++++ +.|+. ..+..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999958999999986602110001133324567888740542128888999998--7544668779999999994999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999364
Q 001763 848 SEGRQIFETMVS 859 (1017)
Q Consensus 848 ~~a~~~~~~m~~ 859 (1017)
++|...+++.+.
T Consensus 95 ~eA~~~~~~a~~ 106 (159)
T d1a17a_ 95 RAALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999998999987
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.1e-07 Score=59.10 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 79999999983899789999999989879999967699999970458968999999999364219976701678899861
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLL 877 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 877 (1017)
.+...+..+...|++++|+..|+++++. .|.... ..+.-......+ ....|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~------------~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESS------------FSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCC------------CCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHCCC------------CCHHHHHHHCHH--------HHHHHHHHHHHH
T ss_conf 9999999999969999999999999887--510100------------035777640646--------799999999998
Q ss_pred HCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 0369979999999868-9999-99989999999971288039999999998508999701797877877269927999
Q 001763 878 GRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVN 953 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~ 953 (1017)
.+.|++++|+..+++. ...| ++..|..++.++...|+++.|...++++++++|+++.+...++.++...++..+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 864211011000000010022310346777999987222999999999999729898999999999999999999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=8.2e-08 Score=59.95 Aligned_cols=89 Identities=18% Similarity=0.057 Sum_probs=75.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
Q ss_conf 88998610369979999999868-9999-999899999999712880399999999985089997017978778772699
Q 001763 871 ACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGN 948 (1017)
Q Consensus 871 ~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~ 948 (1017)
-.++..+.+.|++++|+..+++. ...| ++..|..++.++...|+.+.|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999876058999988610112111100123354564101258774100000111111000003789999999789
Q ss_pred CHHHHHHHHHH
Q ss_conf 27999999999
Q 001763 949 WNEVNTLRREM 959 (1017)
Q Consensus 949 ~~~A~~~~~~~ 959 (1017)
+++|.+..++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=1.3e-05 Score=46.66 Aligned_cols=50 Identities=16% Similarity=-0.095 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCC
Q ss_conf 9979999999868999999989999999971----2880399999999985089
Q 001763 881 GFLKEAEEFIEQLTFEPDSRIWTTLLGACGV----HRDDIRGRLAAKKLIELEP 930 (1017)
Q Consensus 881 g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~l~~~p 930 (1017)
.+.++|..++++....-++..+..|+..+.. ..|.+.|...++++.++.+
T Consensus 196 ~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 196 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 103444546766530368999999999998399976189999999999998769
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.52 E-value=6.4e-07 Score=54.50 Aligned_cols=93 Identities=12% Similarity=0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 6788998610369979999999868-9999-9998999999997128803999999999850899970179787787726
Q 001763 869 HCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAAL 946 (1017)
Q Consensus 869 ~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~ 946 (1017)
.|..+..+|.+.|++++|+..++++ ...| +...|..++.++...|+++.|+..++++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985989899999999999999
Q ss_pred CCCHH-HHHHHHHHHH
Q ss_conf 99279-9999999997
Q 001763 947 GNWNE-VNTLRREMRE 961 (1017)
Q Consensus 947 g~~~~-A~~~~~~~~~ 961 (1017)
+...+ ..+.+.+|.+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8699999999999986
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=1.1e-06 Score=53.13 Aligned_cols=124 Identities=9% Similarity=-0.076 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 79999999983899789999999989879999967699999970458968999999999364219976701678899861
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLL 877 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l 877 (1017)
.+...+..+...|++++|+..|++++.. .|... .... ........ ......|.+++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~-----------~~~~-~~~~~~~~-------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTE-----------EWDD-QILLDKKK-------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCT-----------TCCC-HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCHH-----------HHHH-HHHHHHHH-------HHHHHHHHHHHHHH
T ss_conf 9999999999959999999999987760--73001-----------1105-77887631-------07889996199999
Q ss_pred HCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 0369979999999868-9999-999899999999712880399999999985089997017978778
Q 001763 878 GRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNI 942 (1017)
Q Consensus 878 ~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~ 942 (1017)
.+.|++++|++.++++ ...| +...|..++.++...|+++.|...++++++++|+|+.+...+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9846530111010001000000012467768999996899999999999998298989999999999
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=2.5e-07 Score=57.00 Aligned_cols=106 Identities=13% Similarity=0.002 Sum_probs=60.2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHCCCCH---HHHHHHHHHC-CCCCCH---HHHHHHHHH
Q ss_conf 99970458968999999999364219976-701678899861036997---9999999868-999999---989999999
Q 001763 837 VLTACSHAGRVSEGRQIFETMVSCHGIQP-RVDHCACMVDLLGRWGFL---KEAEEFIEQL-TFEPDS---RIWTTLLGA 908 (1017)
Q Consensus 837 l~~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~l~~~g~~---~eA~~~~~~~-~~~p~~---~~~~~l~~~ 908 (1017)
+++.+...+++++|.+.|++.+. ..| +.+.+..++.+|.+.++. ++|+.+++++ ...|++ .+|..++.+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98873699999999999999883---299989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9712880399999999985089997017978778772
Q 001763 909 CGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 909 ~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
|...|+++.|+..++++++++|++..+...+..+..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 9997316999999999997690989999999999998
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=6.9e-07 Score=54.31 Aligned_cols=84 Identities=10% Similarity=0.030 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 16788998610369979999999868-9999-999899999999712880399999999985089997017978778772
Q 001763 868 DHCACMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 868 ~~~~~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
..+..+..++.+.|++++|+..++++ .+.| ++..|..++.++...|+++.|+..++++++++|++..+...+..++..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99998999998640210136665544310002236777699999980479999999999998598999999999999999
Q ss_pred CCCCHH
Q ss_conf 699279
Q 001763 946 LGNWNE 951 (1017)
Q Consensus 946 ~g~~~~ 951 (1017)
.....+
T Consensus 158 l~~~~~ 163 (169)
T d1ihga1 158 IKAQKD 163 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 998999
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.4e-06 Score=50.98 Aligned_cols=60 Identities=10% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 999999997128803999999999850899970179787787726992799999999997
Q 001763 902 WTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 902 ~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 961 (1017)
|.++..++...|+++.|+..++++++++|.++.++..+|.+|...|++++|...+++..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988642110110000000100223103467779999872229999999999997
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.37 E-value=8e-06 Score=47.85 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999970458968999999999364219976701678899861036997999999986899999998999999997128
Q 001763 834 FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHR 913 (1017)
Q Consensus 834 ~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~~ 913 (1017)
+..-++.+.+.|++++|+..|+.++......+.... ......... ....++.+++.++...|
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHH--------------HHHHHHHHH----HHHHHHHHHHHHHHHHC
T ss_conf 999999999959999999999987760730011105--------------778876310----78899961999999846
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 80399999999985089997017978778772699279999999999769
Q 001763 914 DDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~ 963 (1017)
+++.|+..++++++++|.+..+|..+|.+|...|++++|...+++..+..
T Consensus 82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 53011101000100000001246776899999689999999999999829
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=8.6e-06 Score=47.66 Aligned_cols=95 Identities=14% Similarity=0.042 Sum_probs=45.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH---HHHHHHHHHCCCCCHH----HHHHHHHHHH
Q ss_conf 99999832176898999999999859998740685997678840998---9899998841688846----8799999999
Q 001763 734 SVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDV---KRSAQVFDEMAERNYV----ISWNSMIVGF 806 (1017)
Q Consensus 734 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~----~~~~~l~~~~ 806 (1017)
.+++.+...+++++|++.++.++..++. ++.++..++.++.+.++. ++|+.+++++...+.. .+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 7988736999999999999998832999-899999999999985126789999999999986069931999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 8389978999999998987999996
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDD 831 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~~~~~~~~pd~ 831 (1017)
...|++++|++.|+++++ +.|+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~--~~P~~ 105 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ--TEPQN 105 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHHHHHH--HCCCC
T ss_conf 997316999999999997--69098
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.26 E-value=2.2e-05 Score=45.21 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 89999999971288039999999998508999701797877877269927999999999976
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 901 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 962 (1017)
++.++..++...|+++.|+..++++++++|.+..++..++.+|...|++++|...+.++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99849999877622011000223222013104889998899998827899999999999985
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=3.5e-06 Score=50.02 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 7999999998389978999999998987999996-7699999970458968999999999364
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
.+..++..+...|++++|+..|++.++. .|+. ..+..+..+|.+.|++++|+..++++++
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999859999999999999884--964589998688999881860778999999998
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.20 E-value=8.4e-07 Score=53.80 Aligned_cols=135 Identities=14% Similarity=0.012 Sum_probs=91.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHCCCCH
Q ss_conf 98389978999999998987999996-7699999970458968999999999364219976701-678899861036997
Q 001763 806 FAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVD-HCACMVDLLGRWGFL 883 (1017)
Q Consensus 806 ~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l~~~l~~~g~~ 883 (1017)
....|+.++|+..+++.++ ..|+. .....+...++..|++++|...|+...+ ..|+.. .+..+..++...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9888899999999999999--7899999999999999987999999999999998---6997389999999999834663
Q ss_pred HHHHHHHHHC--CCCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 9999999868--9999999-899999999712880399999999985089997017978778772
Q 001763 884 KEAEEFIEQL--TFEPDSR-IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAA 945 (1017)
Q Consensus 884 ~eA~~~~~~~--~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~ 945 (1017)
+++..-.... ..+|+.. .+...+..+...|+.+.|...++++.++.|..+..+...+..+..
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~~f~wi~ 145 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVR 145 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTEEESCEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 78998754442035864799999999999967998999999999983399998100155778874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=3.9e-06 Score=49.74 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9989999999971288039999999998508999701797877877269927999999999976
Q 001763 899 SRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREK 962 (1017)
Q Consensus 899 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 962 (1017)
...|.+++.++...|+++.|+..++++++++|.++.+|..+|.+|...|++++|.+.+++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999989999986402101366655443100022367776999999804799999999999985
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.7e-05 Score=45.79 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=55.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHH
Q ss_conf 8998610369979999999868-9999-99989999999971288039999999998508999701-------7978778
Q 001763 872 CMVDLLGRWGFLKEAEEFIEQL-TFEP-DSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP-------YVQLSNI 942 (1017)
Q Consensus 872 ~l~~~l~~~g~~~eA~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~-------~~~l~~~ 942 (1017)
.+++.+.+.|++++|++.+++. ...| +...|..++.++...|+++.|+..++++++++|.++.. |..++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999998599999999999998849645899986889998818607789999999986801278898899999999999
Q ss_pred HHHCCCCHHHHHHHHHHHH
Q ss_conf 7726992799999999997
Q 001763 943 YAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 943 y~~~g~~~~A~~~~~~~~~ 961 (1017)
+...+++++|.+.+++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHH
T ss_conf 9993889999999999984
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.17 E-value=4.2e-06 Score=49.56 Aligned_cols=56 Identities=7% Similarity=-0.006 Sum_probs=22.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 999998389978999999998987999996-7699999970458968999999999364
Q 001763 802 MIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 802 l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
++..+...|++++|+..|++.++. .|+. ..+..+..++.+.|++++|+..|+++++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 78 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM 78 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999876058999988610112--111100123354564101258774100000111
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=9.1e-05 Score=41.41 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH----HCCCCCCCH
Q ss_conf 7999999998389978999999998987999996-7699999970458968999999999364----219976701
Q 001763 798 SWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS----CHGIQPRVD 868 (1017)
Q Consensus 798 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 868 (1017)
.+..++..+...|++++|+..++++++ ..|.. ..+..++.+|...|++++|+..|+++.. +.|+.|..+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 999999999887990578999999998--49851999999999999855799999999999999899848996899
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=3.1e-06 Score=50.35 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=60.2
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHCCCCCC-CHHHHHHHH
Q ss_conf 389978999999998987999996-7699999970458----------9689999999993642199767-016788998
Q 001763 808 KNGYAEDALKVFHEMKETQAMPDD-VTFLGVLTACSHA----------GRVSEGRQIFETMVSCHGIQPR-VDHCACMVD 875 (1017)
Q Consensus 808 ~~g~~~~A~~~~~~~~~~~~~pd~-~~~~~l~~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~ 875 (1017)
+.+.+++|+..|++.++ ..|+. ..+..+..+|... +.+++|+..|+++++ +.|+ ...|..++.
T Consensus 9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHH
T ss_conf 87369999999999986--18831089999999998762133336778878889999999887---30120587766899
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 61036997999999986899999998999999997128803999999999850899970179787787726992799999
Q 001763 876 LLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTL 955 (1017)
Q Consensus 876 ~l~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 955 (1017)
+|...|++. ++.. ...++++.|...++++++++|++..++..|+... +|.++
T Consensus 84 ~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL 135 (145)
T ss_dssp HHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred HHHHCCCCH------------HHHH---------HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH-------HHHHH
T ss_conf 998701011------------3578---------8988678763121100025988899999999999-------97978
Q ss_pred HHHHHHCC
Q ss_conf 99999769
Q 001763 956 RREMREKG 963 (1017)
Q Consensus 956 ~~~~~~~~ 963 (1017)
...+...|
T Consensus 136 ~~e~~k~~ 143 (145)
T d1zu2a1 136 HAEAYKQG 143 (145)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHHH
T ss_conf 99999873
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=0.00011 Score=40.99 Aligned_cols=60 Identities=13% Similarity=-0.028 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 899999999712880399999999985089997017978778772699279999999999
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMR 960 (1017)
Q Consensus 901 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 960 (1017)
.|..+...+...|+.+.|...++++++.+|.+...|..++.+|...|++++|.+.+++..
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999999887990578999999998498519999999999998557999999999999
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.93 E-value=3.1e-06 Score=50.34 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 039999999998508999701797877877269
Q 001763 915 DIRGRLAAKKLIELEPENPSPYVQLSNIYAALG 947 (1017)
Q Consensus 915 ~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g 947 (1017)
++.|+..++++++++|+++.+|+.+|.+|...|
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 888999999988730120587766899998701
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.91 E-value=6.9e-06 Score=48.21 Aligned_cols=117 Identities=10% Similarity=0.040 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 2176898999999999859998740685997678840998989999884168--88468799999999838997899999
Q 001763 741 VLSSLRDGGEIHSLIFHTGYDLDEITGSALIDMYAKCGDVKRSAQVFDEMAE--RNYVISWNSMIVGFAKNGYAEDALKV 818 (1017)
Q Consensus 741 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 818 (1017)
..|++++|...++..++..+. +...+..++.+|+..|++++|...++...+ |+....+..+...+...+..+++..-
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 888999999999999997899-9999999999999879999999999999986997389999999999834663789987
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9998987999996-7699999970458968999999999364
Q 001763 819 FHEMKETQAMPDD-VTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 819 ~~~~~~~~~~pd~-~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
....... ..|+. ......+..+...|+.++|...++++.+
T Consensus 87 ~~~~~~~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 87 AATAKVL-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp CCCEECC-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5444203-5864799999999999967998999999999983
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.81 E-value=5.9e-05 Score=42.56 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=23.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9983899789999999989879-9999----------67699999970458968999999999364
Q 001763 805 GFAKNGYAEDALKVFHEMKETQ-AMPD----------DVTFLGVLTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 805 ~~~~~g~~~~A~~~~~~~~~~~-~~pd----------~~~~~~l~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
.+...|++++|+..|++.++.. -.|+ ...|..+..+|...|++++|...++..+.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~ 83 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 83 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 999859999999999999986844201020012102799999999999982863001576643553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00053 Score=36.74 Aligned_cols=295 Identities=11% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999859999947799999740588751014699999998299888658998899988706991889999842999998
Q 001763 614 YRGMQTEGLSPNDITFTSLLDACDGPYKFHLGTQIHCLIVKKGLLFDDDFLHIALLSMYMNSKRNTDARLLFTEFPNPKS 693 (1017)
Q Consensus 614 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 693 (1017)
+.++.+---.|+..-...+..-|...|.++.|..++..+...+ .++..|.+.++++.|...+.+. .+
T Consensus 2 ~~~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~----------rl~~~~v~l~~~~~avd~~~k~---~~ 68 (336)
T d1b89a_ 2 LAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFG----------RLASTLVHLGEYQAAVDGARKA---NS 68 (336)
T ss_dssp HHHHTTTTTCC----------------CTTTHHHHHHHTTCHH----------HHHHHHHTTTCHHHHHHHHHHH---TC
T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHH----------HHHHHHHHHCCHHHHHHHHHHC---CC
T ss_conf 4569998758985789999999987877999999998678999----------9999997031599999999880---88
Q ss_pred CEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 21300132100137991479999999997898867976999999983217689899999999985999874068599767
Q 001763 694 TVLWTAVISGHAQNDSNYEALHFYREMRSHNVLPDQATFVSVLRACAVLSSLRDGGEIHSLIFHTGYDLDEITGSALIDM 773 (1017)
Q Consensus 694 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 773 (1017)
..+|..+...+.+.....-+ .+.......+......++..+...|..++...+++........ +...++.++.+
T Consensus 69 ~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~-~~~~~~~L~~l 142 (336)
T d1b89a_ 69 TRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTELAIL 142 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
T ss_conf 99999999999727287899-----9999875357887899999998769859999999999757744-46799999999
Q ss_pred HHHCCCHHHHHHHHHHCCCCCHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC
Q ss_conf 88409989899998841688846---------879999999983899789999999989879999967699999970458
Q 001763 774 YAKCGDVKRSAQVFDEMAERNYV---------ISWNSMIVGFAKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHA 844 (1017)
Q Consensus 774 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~ 844 (1017)
|++.+.-.....+-.....-+.. ..|..++..|.+.|++++|+.+.-+ ..|+..........+.+.
T Consensus 143 yak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 143 YSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKV 217 (336)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHC
T ss_pred HHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHHHHHCC
T ss_conf 998694999999986023599999999988748749999999855879999999997-----654456699999999724
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 96899999999936421997670167889986103699799999998689999999899999999712880399999999
Q 001763 845 GRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKK 924 (1017)
Q Consensus 845 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 924 (1017)
++.+...++....++ -++.....+.......-...+..+.++ ..+++......++.
T Consensus 218 ~N~e~~~~~i~~yL~-----~~p~~i~~lL~~v~~~~d~~r~V~~~~-------------------k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 218 ANVELYYRAIQFYLE-----FKPLLLNDLLMVLSPRLDHTRAVNYFS-------------------KVKQLPLVKPYLRS 273 (336)
T ss_dssp SSTHHHHHHHHHHHH-----HCGGGHHHHHHHHGGGCCHHHHHHHHH-------------------HTTCTTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----CCHHHHHHHHHHHCCCCCHHHHHHHHH-------------------HCCCCHHHHHHHHH
T ss_conf 786999999999997-----599999999998565799899999998-------------------53880779999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9850899970179787787726992799999999
Q 001763 925 LIELEPENPSPYVQLSNIYAALGNWNEVNTLRRE 958 (1017)
Q Consensus 925 ~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 958 (1017)
..+.+ +...+..|..+|...++++.-.+..+.
T Consensus 274 v~~~n--~~~vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 274 VQNHN--NKSVNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCC--HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99818--099999999998671246789999987
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.75 E-value=0.00011 Score=40.80 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=10.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 9970458968999999999364
Q 001763 838 LTACSHAGRVSEGRQIFETMVS 859 (1017)
Q Consensus 838 ~~a~~~~g~~~~a~~~~~~m~~ 859 (1017)
...+...|++++|+..|++.++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~ 37 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAME 37 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999985999999999999998
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.00026 Score=38.62 Aligned_cols=83 Identities=17% Similarity=0.044 Sum_probs=52.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHC
Q ss_conf 99999970458968999999999364219976701678899861036997999999986899999-99899999999712
Q 001763 834 FLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEAEEFIEQLTFEPD-SRIWTTLLGACGVH 912 (1017)
Q Consensus 834 ~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA~~~~~~~~~~p~-~~~~~~l~~~~~~~ 912 (1017)
+..++..+.+.|++++|+..|++.++.....+ ...++ ..++..++.++...
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~----------------------------~~~~~~~~~l~~Lg~~~~~~ 59 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGE----------------------------ISTIDKVSVLDYLSYAVYQQ 59 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------------CCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----------------------------CCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999997799999999999999886530----------------------------14764789999872688865
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 88039999999998508999701797877877
Q 001763 913 RDDIRGRLAAKKLIELEPENPSPYVQLSNIYA 944 (1017)
Q Consensus 913 ~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~ 944 (1017)
|+.+.|...++++++++|+++.++..++.+..
T Consensus 60 g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 60 GDLDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 77398887887798869297999999999999
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00098 Score=35.12 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999971288039999999998508999-------70179787787726992799999999997
Q 001763 904 TLLGACGVHRDDIRGRLAAKKLIELEPEN-------PSPYVQLSNIYAALGNWNEVNTLRREMRE 961 (1017)
Q Consensus 904 ~l~~~~~~~~~~~~a~~~~~~~l~~~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 961 (1017)
.++..+...||++.|+..+++++++.|.+ ..++..|+++|.+.|++++|...++++.+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999779999999999999988653014764789999872688865773988878877988
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.021 Score=27.06 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 89999999971288039999999998508999701
Q 001763 901 IWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSP 935 (1017)
Q Consensus 901 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~ 935 (1017)
.|..|.-++...|+++.|...++++++.+|+|..+
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999998732999999999998239984999
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.03 E-value=0.051 Score=24.69 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----CCCCHHHHHHHHHHHHCC
Q ss_conf 80399999999985089997017978778772----699279999999999769
Q 001763 914 DDIRGRLAAKKLIELEPENPSPYVQLSNIYAA----LGNWNEVNTLRREMREKG 963 (1017)
Q Consensus 914 ~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~~~~~~ 963 (1017)
|.+.|...++++.+.. ++.+...|+.+|.. ..+..+|.+++++.-+.|
T Consensus 74 d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCC--CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 3578888875000257--406778999999829846778999999999999878
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.067 Score=23.97 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCHH-HHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 976788409989899998841688846-879-9999999838997899999999898
Q 001763 770 LIDMYAKCGDVKRSAQVFDEMAERNYV-ISW-NSMIVGFAKNGYAEDALKVFHEMKE 824 (1017)
Q Consensus 770 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 824 (1017)
++....+.+++..+...+..+...... .-| .=++.++...|+.++|...|.....
T Consensus 291 ~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 291 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 999998829869999999865846242899999999999983981568999999845
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.08 E-value=0.085 Score=23.33 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7899999999898
Q 001763 812 AEDALKVFHEMKE 824 (1017)
Q Consensus 812 ~~~A~~~~~~~~~ 824 (1017)
.++|++.|++..+
T Consensus 75 ~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 75 LRKAAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
T ss_conf 5788888750002
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.73 E-value=0.19 Score=21.25 Aligned_cols=140 Identities=14% Similarity=0.143 Sum_probs=69.7
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 83899789999999989879999967699999970458968999999999364219976701678899861036997999
Q 001763 807 AKNGYAEDALKVFHEMKETQAMPDDVTFLGVLTACSHAGRVSEGRQIFETMVSCHGIQPRVDHCACMVDLLGRWGFLKEA 886 (1017)
Q Consensus 807 ~~~g~~~~A~~~~~~~~~~~~~pd~~~~~~l~~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~l~~~g~~~eA 886 (1017)
...|..++..++..+..... +..-|+-.+--....-+-+-..+.++..-+-+.+.|= .....++.++.+.+...|-
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~~se~ 88 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNTLNEH 88 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHCCCC---CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHHH-HCHHHHHHHHHHHCCHHHH
T ss_conf 87424886799999984667---7551244545243000268999999987634085243-2678999999883621899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9999868999999989999999971288039999999998508999701797877877269927999999999976994
Q 001763 887 EEFIEQLTFEPDSRIWTTLLGACGVHRDDIRGRLAAKKLIELEPENPSPYVQLSNIYAALGNWNEVNTLRREMREKGVK 965 (1017)
Q Consensus 887 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~~~ 965 (1017)
....+...-.+|.-+.-...++.+++.+.-+++....+++.|.+.|...++.++..+.-++|++
T Consensus 89 ---------------vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 89 ---------------VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ---------------HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ---------------HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf ---------------9999999998260878999999987537998799999999998852244489999999997599
|