Citrus Sinensis ID: 001776
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1015 | 2.2.26 [Sep-21-2011] | |||||||
| Q27GK7 | 1135 | Topless-related protein 4 | yes | no | 0.996 | 0.890 | 0.764 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.986 | 0.885 | 0.753 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.977 | 0.885 | 0.745 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.969 | 0.870 | 0.636 | 0.0 | |
| Q84JM4 | 1108 | Topless-related protein 3 | no | no | 0.968 | 0.887 | 0.604 | 0.0 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.363 | 0.272 | 0.265 | 1e-18 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.528 | 0.351 | 0.210 | 1e-16 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.402 | 0.325 | 0.233 | 1e-13 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.497 | 0.300 | 0.228 | 1e-12 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.233 | 0.319 | 0.25 | 2e-12 |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/1017 (76%), Positives = 879/1017 (86%), Gaps = 6/1017 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFK+TVH+LE++SGFFFNMRYFED VT GEWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK+D AKAV+ILVK+LKVFS FNE+LFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
L NFR+NEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDHTCG PNGA PSP TN LMG+VPK G FPPL AHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKR--PRTPPTNNSAMDYQ 298
PTPA L TSLAGWM NPS V HP+ SAGPI L A N+A ++LKR PR+PPTN+ +MDYQ
Sbjct: 241 PTPAPLTTSLAGWMPNPS-VQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299
Query: 299 TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
TADSE VLKR RPFGISD VNNL VN+LPV Y QS ++YSTDDLPK V L+QGSA
Sbjct: 300 TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILSQGSA 359
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
+KSMDFHPVQQ +L+VGTN+GD+ +WEVGSRE++ +SFKVW+L C++ LQASL+S+YT
Sbjct: 360 IKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLASEYT 419
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
A+VNRV+WSPDG L GVAYSKHIVH+Y+YHGG++LRNHLEI+AH G+VNDLAFS PN+QL
Sbjct: 420 AAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQL 479
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
VVTCGED+ IKVWDAVTG K + FEGHE+PVYS+CPH KENIQFIFSTA DGKIKAWLY
Sbjct: 480 CVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLY 539
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDYDAPG S T MAY ADG RLFSCGT+KEGES++VEWNESEGAVKRTY GLGK
Sbjct: 540 DNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGK 599
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RSVGVVQFDT KN+FL AGDEF +KFWDMD+V+LL+S A+GGL +SPC+R NKEG LLA
Sbjct: 600 RSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTLLA 659
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSL-- 716
VST DNGIKILANA+G R+L ++ +R D+SR ++ K P +GTFG+ N++ G SL
Sbjct: 660 VSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSM 719
Query: 717 GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
GER+ P A++ G++ D+R+ DVKP+IAD+A EKS+ WKLTEI+E SQ R+LRLPD L
Sbjct: 720 GERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPDTLLP 778
Query: 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
RV +LIYTNSG AILALA NA HKLWKW ++ERN GKA +N PQLWQP SG+LMTND
Sbjct: 779 ARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTND 838
Query: 837 ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896
+ N ED VPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAAT LAFHPQD
Sbjct: 839 TREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQD 898
Query: 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
NNIIAIGM+DSSIQIYNVRVDEVK+KLKGHQKR+TGLAFSN LNVLVSSGADSQLCVWS
Sbjct: 899 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSM 958
Query: 957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
DGWEKQASK + IP+G + + LA TRVQFH DQ H+L VH +Q+AIYEAPKLE +KQ
Sbjct: 959 DGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQ 1015
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1604 bits (4154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1017 (75%), Positives = 873/1017 (85%), Gaps = 16/1017 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CG PNGARAPSPV NPL+G +PKAG FPPL AHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PT + +PT LAGWM++PS VPHP+ SAG IAL + AA LK PRTPPTN S +DY +A
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNAS-LDYPSA 298
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSS--YSTDDLPKTVVMTLNQGSA 358
DSEHV KR+RP GISDEVN L VN+LP++++ Q+ G S + DDLPKTV TL+QGS+
Sbjct: 299 DSEHVSKRTRPMGISDEVN-LGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+ K+FKVW+L CSMPLQA+L +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND++FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
V+TCG+D+ IKVWDA TG K++ FEGHE+PVYS+CPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDYDAPG T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RS+GVVQFDTTKNR+LAAGD+F IKFWDMD V LL +ID DGGLQASP IRFNKEG LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG- 717
VS N+N IKI+AN+DG+RLL T E+ + ++S+ PAI + +A A TS G
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSESSK---------PAINSIAAAAAAAATSAGH 708
Query: 718 -ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
+R+A ++ GM+ DSRN DVKP I +E+ +KS+IWKLTE++EPSQCRSLRLP+NL
Sbjct: 709 ADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
++SRLI+TNSG AILALASNA+H LWKW RNERN+TGKAT + PQ WQP SGILMTND
Sbjct: 769 AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTND 828
Query: 837 ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896
+++TNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQD
Sbjct: 829 VAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 888
Query: 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
NNIIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+T
Sbjct: 889 NNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948
Query: 957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
DGWEKQ SK L +P GR SA +DTRVQFH DQ H L VHETQ+AIYE KLEC+KQ
Sbjct: 949 DGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQ 1005
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1595 bits (4131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 757/1015 (74%), Positives = 867/1015 (85%), Gaps = 23/1015 (2%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+C PN ARAPSPV NPL+G++PKA FPPL AHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PTP+ +PT LAGWM++PS VPHP+ S GPIAL A + AA LK PRTPP+N SA+DY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSN-SAVDYPSG 298
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLG--QSSYSTDDLPKTVVMTLNQGSA 358
DS+HV KR+RP GISDEV+ L VN+LP+ + Q+ G Q+ + DDLPKTV TL+QGS+
Sbjct: 299 DSDHVSKRTRPMGISDEVS-LGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+ K+FKVW+L CSMPLQA+L +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND+AFS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
V TCG+D+ IKVWDA TG K+Y FEGHE+PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDY+APG T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RS+GVVQFDTTKNR+LAAGD+F IKFWDMD + LL +IDADGGLQASP IRFNKEG LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
VS NDN IK++AN+DG+RLL TVE+ + ++S+ PAI + + E
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSK---------PAINSI---------PMVE 699
Query: 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
R A ++ GM+ DSRN DVKP I +E+ +KS++WKLTE+ EPSQCRSLRLP+N+ +
Sbjct: 700 RPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTK 759
Query: 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
+SRLI+TNSG AILALASNA+H LWKW RN+RN+TGKAT + PQ WQP SGILMTND++
Sbjct: 760 ISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVA 819
Query: 839 DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
+TNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 820 ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
IIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+TDG
Sbjct: 880 IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939
Query: 959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
WEKQ SK L IP GR+ S+L+DTRVQFH DQ H L VHETQ+AIYE KLEC+KQ
Sbjct: 940 WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQ 994
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Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1306 bits (3380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/1028 (63%), Positives = 780/1028 (75%), Gaps = 44/1028 (4%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQ+SGFFFN++YFE+ GEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ DRAKAVEIL KDLKVF+ FNE+L+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH-GPF 239
WQHQLCKNPR NPDIKTLF+DH+C NGARA +PV P+ AV + F PL H GPF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239
Query: 240 QP--TPAALPTSLAGWMANPSP---VPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSA 294
Q PA +LAGWMANP+P VP +A P + + LK PR P +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQ--VNELKHPRAPSNSLGL 297
Query: 295 MDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLN 354
MDYQ+AD E ++KR R S+EV P P + S DDLP+ VV T+
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVT------YPAHSHPPA------SLDDLPRNVVSTIR 345
Query: 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 414
QGS V SMDFHP LL VG + G+V LWEVGSRE++ + FK+W + ACS+ Q S+
Sbjct: 346 QGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIV 405
Query: 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
+ + SV RV WSPDG L GV+++KH++H+Y Y G D LR HLEI+AHVG VNDLAF++P
Sbjct: 406 KEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHP 464
Query: 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 534
NKQ+ VVTCG+D++IKVWD ++G K + FEGHE+PVYSICPH KENIQFIFSTA DGKIK
Sbjct: 465 NKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIK 523
Query: 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
AWLYDN+GSRVDYDAPG T M YSADG+RLFSCGT+KEG+S+LVEWNESEGA+KRTY
Sbjct: 524 AWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYL 583
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
G K+S GVVQFDTT+NRFLA G++ IKFW+MDN NLL ++A+GGL P +RFNK+G
Sbjct: 584 GFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDG 643
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDAS------RVASAAIVK--APAIGTFG 706
LLAV+T DNG KILAN DG+R LR E+R+F+AS +V+++A+ +PAIG
Sbjct: 644 NLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIE 703
Query: 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR 766
+A G P G+ SR T KP+ D +V+KS+ +LTEI +P+QCR
Sbjct: 704 HMDA------GSPARPTPIPNGIEAMSR--TMEKPRNLD-SVDKSKPLELTEIVDPTQCR 754
Query: 767 SLRLPDNLTAM-RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825
+ +PD+ ++ +V+RL+YTNSG+ +LAL SN V +LWKW RNE+N TGKAT + PQ W
Sbjct: 755 QVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHW 814
Query: 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPP 885
QP SG+LM ND+ + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK MTTFMPPPP
Sbjct: 815 QPNSGLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPP 873
Query: 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
A+TFLAFHPQDNNIIAIGMEDSSI IYNVRVDEVKTKLKGHQK ITGLAFS LN+LVSS
Sbjct: 874 ASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSS 933
Query: 946 GADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 1005
GAD+QL W+ D WEK+ S + +P G+ + + DTRVQFH DQ LL HETQ+AIY+A
Sbjct: 934 GADAQLFFWTADSWEKKKSSAIQLPPGK--APVGDTRVQFHNDQIQLLVSHETQLAIYDA 991
Query: 1006 PKLECLKQ 1013
K+EC+ +
Sbjct: 992 SKMECIHK 999
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/1018 (60%), Positives = 755/1018 (74%), Gaps = 35/1018 (3%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VH+LE++SGFFFN +YF++ V GEWD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++++AKAVEILV+DL+VFS FNE+L+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
L+NFR+NEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+L++SRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAH-GPF 239
WQHQLCKNPR NPDIKTLF DHTC PNG APS V P+ + K A+P L H
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239
Query: 240 QPTPAALPTSLAGWMANPSPVPHPSPS-AGPIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
AA +LA WMA S + P + N +ILKRPRTPP +DYQ
Sbjct: 240 PGPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQ 299
Query: 299 TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
D E ++KR RP +EV P Q+ +S +DLP + L+QGS
Sbjct: 300 NPDHE-LMKRLRPAPSVEEVT-----------YPAPRQQAPWSLEDLPTKAALALHQGST 347
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
V SM+F+P+Q LL+VG+ G++ LWE+ +RER+ + FK+W++ CS QA ++ +
Sbjct: 348 VTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETP 407
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
SV RV WSPDG GVA++KH++ LY + G ++LR H EI+AHVG+VNDLAF+ PN+QL
Sbjct: 408 ISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQL 467
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
V+TCG+D++IKVWD V+G K + FEGH++PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 468 CVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLY 526
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DNLGSRVDYDAPG T M YSADG RLFSCGT+K+G+S+LVEWNESEG++KRTY K
Sbjct: 527 DNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQK 586
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
+ GVVQFDT+KN FLA G++ IKFWDM+N+N+L S DA+GGL A P +RFNK+G LLA
Sbjct: 587 KLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLA 646
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASR--VASAAIVKAPAIGTFGSANANVGTSL 716
V+T DNG KILAN G R LR +E+ + R V A+ AP S N V
Sbjct: 647 VTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPV----ASVNCKV---- 698
Query: 717 GERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL-T 775
ER +P + N D D++ +K + W+L EI +PSQC LPD +
Sbjct: 699 -ERGSPV-----RHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGS 752
Query: 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTN 835
+ +V +L+YTNSG ILAL SN + +LWKW NE+N +GKAT PQ WQP SG+LMTN
Sbjct: 753 STKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTN 812
Query: 836 DISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895
D+S N E+A PC ALSKNDSYVMSA+GGK+SLFNMMTFK MTTFMPPPPA+TFLAFHPQ
Sbjct: 813 DVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQ 872
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
DNN+IAIGMEDS+I IYNVRVDEVK+KLKGHQKRITGLAFS LN+LVSSGAD+Q+C WS
Sbjct: 873 DNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWS 932
Query: 956 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
D WEK+ S + +P G+ A+ DTRVQFH+DQ +L VHETQ+A+++A K+EC++Q
Sbjct: 933 IDTWEKRKSVAIQMPAGKAAN--GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQ 988
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 175/430 (40%), Gaps = 61/430 (14%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPK-------TVVMTL-NQGSAVKSMDFHPVQQILLVVGT 376
+ VA++P +S S D K T TL GS+V S+ F P Q V +
Sbjct: 928 VQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQ---RVAS 984
Query: 377 NMGDVMLWEVGSRERIAVKSFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434
GD K+ K+W+ G C+ L+ + SV V +SPDG
Sbjct: 985 GSGD--------------KTIKIWDTASGTCTQTLEG-----HGGSVWSVAFSPDGQRVA 1025
Query: 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494
+ ++ G + +E H G V + FS P+ Q V + +D IK+WDA
Sbjct: 1026 SGSDDKTIKIWDTASGTCTQT---LEGHGGWVQSVVFS-PDGQ-RVASGSDDHTIKIWDA 1080
Query: 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS 554
V+GT EGH V+S+ + Q + S + DG IK W D GH
Sbjct: 1081 VSGTCTQTLEGHGDSVWSVA--FSPDGQRVASGSIDGTIKIW--DAASGTCTQTLEGHGG 1136
Query: 555 TM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612
+ +A+S DG R+ S + + W+ + G +T G G V V F R
Sbjct: 1137 WVHSVAFSPDGQRVASGSID----GTIKIWDAASGTCTQTLEGHGGW-VQSVAFSPDGQR 1191
Query: 613 FLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672
+ + IK WD + +++ GG S + F+ +G +A ++DN IKI A
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VAFSPDGQRVASGSSDNTIKIWDTA 1249
Query: 673 DG-----IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMV 727
G + + T +FD + A + IG A A + SL + ++P
Sbjct: 1250 SGTCTQTLNVGSTATCLSFDYTN----AYINT-NIGRIQIATATM-ESLNQLSSPVCYSY 1303
Query: 728 GMSNDSRNFT 737
G+ D R T
Sbjct: 1304 GLGQDHRWIT 1313
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 138/657 (21%), Positives = 258/657 (39%), Gaps = 121/657 (18%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLW 384
I+ +T SL +++ +L +V + +V ++ F P + L G + G V W
Sbjct: 835 IIGADFTNTSLRCVNFTEANLAYSVFTKIL--GSVLTVAFSPDGK-LFATGDSGGIVRFW 891
Query: 385 EVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 443
E + +E + K W VN V +S DG + V
Sbjct: 892 EAATGKELLTCKGHNSW--------------------VNSVGFSQDGKMLASGSDDQTVR 931
Query: 444 LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503
L+ G L+ + H V + FS PN L + + D+ +++WD +G YIF
Sbjct: 932 LWDISSGQCLKT---FKGHTSRVRSVVFS-PNS-LMLASGSSDQTVRLWDISSGECLYIF 986
Query: 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSA 561
+GH VYS+ + ++ + + + D ++ W D S+ Y GH+S + + +S+
Sbjct: 987 QGHTGWVYSVAFNLDGSM--LATGSGDQTVRLW--DISSSQCFYIFQGHTSCVRSVVFSS 1042
Query: 562 DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621
DGA L S ++ + W+ S G T G V V F + GD+ +
Sbjct: 1043 DGAMLASGSDDQT----VRLWDISSGNCLYTLQG-HTSCVRSVVFSPDGAMLASGGDDQI 1097
Query: 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681
++ WD+ + N L ++ G + F+ G+ LA ++D ++ L + + L T+
Sbjct: 1098 VRLWDISSGNCLYTL--QGYTSWVRFLVFSPNGVTLANGSSDQIVR-LWDISSKKCLYTL 1154
Query: 682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741
+ T + VA F A + + G++T
Sbjct: 1155 QGHTNWVNAVA------------FSPDGATLASGSGDQTV-------------------- 1182
Query: 742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHK 801
R+W ++ S+C L + T+ V+ +++ G + + +S+ +
Sbjct: 1183 ----------RLWDIS----SSKC--LYILQGHTSW-VNSVVFNPDGSTLASGSSDQTVR 1225
Query: 802 LWKWPRNERNSTGKATTNQAPQLWQ-----PPSGILMTNDISDTNPE------------- 843
LW E NS+ T Q W P G ++ + SD
Sbjct: 1226 LW-----EINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTF 1280
Query: 844 ----DAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
+ V A + + S + S SG + + L+ + + K + TF + + F P D
Sbjct: 1281 QGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSP-DGT 1339
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
++A G +D +++++++ E GH + + FS +L S D + +WS
Sbjct: 1340 MLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWS 1396
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/459 (23%), Positives = 184/459 (40%), Gaps = 50/459 (10%)
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYL 579
Q + + TD ++ W + ++ GHS+ + +S DG L SCG ++ +
Sbjct: 655 QLLATCDTDCHVRVWEVKS--GKLLLICRGHSNWVRFVVFSPDGEILASCGADEN----V 708
Query: 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
W+ +G +T G + V V F +A + IK WD+ + L ++
Sbjct: 709 KLWSVRDGVCIKTLTG-HEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLT-- 765
Query: 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKA 699
G C+ F+ +G LA S D+ IK+ + G + LRT++S T VA +A +
Sbjct: 766 GHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQG-KCLRTLKSHTGWVRSVAFSADGQT 824
Query: 700 PAIG----TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT---DVKPKIADEAVEKSR 752
A G T N + G L +G +N + D K ++ +
Sbjct: 825 LASGSGDRTIKIWNYHTGECL-------KTYIGHTNSVYSIAYSPDSKILVSGSGDRTIK 877
Query: 753 IWKL-TEITEPSQ-------CRSLRLPDNLTAMRVS-----RLIYTNSGLAILALASNAV 799
+W T I + C PD T VS RL +G + A N
Sbjct: 878 LWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTD 937
Query: 800 HKLWKWP---RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856
W P +R + ++ +LW +G +++ T D + A S +
Sbjct: 938 ---WALPVAFSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHT---DFIYGIAFSPDSQ 991
Query: 857 YVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915
+ SAS + L+N+ T + + + FHPQ IIA G D +++++N+
Sbjct: 992 TLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFHPQ-GKIIATGSADCTVKLWNIS 1050
Query: 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954
+ L H +I G+A+S +L S+ AD + +W
Sbjct: 1051 TGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLW 1089
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 134/586 (22%), Positives = 236/586 (40%), Gaps = 81/586 (13%)
Query: 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS 479
+V V +SPDG S + L+ G L+ I H +VN++ FS K L+
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKT---ITGHEQTVNNVYFSPDGKNLA 1171
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
+ D IK+WD +G GH + V ++ + Q I + + D +K W
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITV--RFSPDGQTIAAGSEDKTVKLWHRQ 1227
Query: 540 NLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597
+ ++ GH + +++S DG L S +K + W ++G + +T G
Sbjct: 1228 D--GKLLKTLNGHQDWVNSLSFSPDGKTLASASADKT----IKLWRIADGKLVKTLKG-H 1280
Query: 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657
SV V F + +A + IK W+ + L GG+ A + F + ++
Sbjct: 1281 NDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VNFLPDSNII 1337
Query: 658 AVSTNDNGIK-----------ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706
A ++ DN I+ +LA G+ + S D S +A+A A G
Sbjct: 1338 ASASLDNTIRLWQRPLISPLEVLAGNSGVYAV----SFLHDGSIIATAG-----ADGNIQ 1388
Query: 707 SANANVGTSLGERTAPA-AAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKLTEITEPSQ 764
++ G+ L +T P A+ G+S FT IA +K+ +IW+ + +
Sbjct: 1389 LWHSQDGSLL--KTLPGNKAIYGIS-----FTPQGDLIASANADKTVKIWR---VRDGKA 1438
Query: 765 CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-----KWPRNERNST------ 813
++L DN V+++ ++ G + + + + KLW K+ + + T
Sbjct: 1439 LKTLIGHDN----EVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWV 1494
Query: 814 -----GK----ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGG 864
GK A+ ++ +LW SG L+ S D V + + S + S S
Sbjct: 1495 SFSPDGKIIASASADKTIRLWDSFSGNLIK---SLPAHNDLVYSVNFNPDGSMLASTSAD 1551
Query: 865 K-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923
K + L+ + TF +F P D IA ED +++I+ + + T L
Sbjct: 1552 KTVKLWRSHDGHLLHTFSGHSNVVYSSSFSP-DGRYIASASEDKTVKIWQID-GHLLTTL 1609
Query: 924 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI 969
HQ + FS L+S D+ +W D + + S+ T+
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKIWRFDSQQAKTSQMNTL 1655
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 15/252 (5%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T V V +SPDG L V L+ +E E H V D+AFS P+
Sbjct: 500 HTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEE---RAVFEGHTHYVLDIAFS-PDG 555
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+ V + D ++W+ TGT+ + +GH VY++ + + S + DG I+ W
Sbjct: 556 SM-VASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA--FSPDGSMVASGSRDGTIRLW 612
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
R AP + +A+S DG+ L +S + W+ + G T+ G
Sbjct: 613 DVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SDSTVHLWDVASGEALHTFEG- 666
Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656
V V F + D+ I+ WD+ ++ +G + + F+ EG
Sbjct: 667 HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTL--EGHTEPVHSVAFHPEGTT 724
Query: 657 LAVSTNDNGIKI 668
LA ++ D I+I
Sbjct: 725 LASASEDGTIRI 736
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1015 | ||||||
| 356546114 | 1232 | PREDICTED: topless-related protein 4-lik | 0.997 | 0.821 | 0.883 | 0.0 | |
| 359484207 | 1133 | PREDICTED: topless-related protein 4-lik | 0.997 | 0.893 | 0.882 | 0.0 | |
| 356562983 | 1134 | PREDICTED: topless-related protein 4-lik | 0.997 | 0.892 | 0.880 | 0.0 | |
| 449443059 | 1134 | PREDICTED: topless-related protein 4-lik | 0.997 | 0.892 | 0.877 | 0.0 | |
| 359484209 | 1123 | PREDICTED: topless-related protein 4-lik | 0.987 | 0.892 | 0.873 | 0.0 | |
| 359484211 | 1123 | PREDICTED: topless-related protein 4-lik | 0.987 | 0.892 | 0.873 | 0.0 | |
| 357478183 | 1132 | WD repeat-containing protein [Medicago t | 0.994 | 0.891 | 0.857 | 0.0 | |
| 224087108 | 1132 | predicted protein [Populus trichocarpa] | 0.995 | 0.892 | 0.854 | 0.0 | |
| 255572487 | 1134 | WD-repeat protein, putative [Ricinus com | 0.996 | 0.891 | 0.858 | 0.0 | |
| 224142595 | 1126 | predicted protein [Populus trichocarpa] | 0.989 | 0.891 | 0.846 | 0.0 |
| >gi|356546114|ref|XP_003541476.1| PREDICTED: topless-related protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1890 bits (4897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 895/1013 (88%), Positives = 959/1013 (94%), Gaps = 1/1013 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 101 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 160
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK+DRAKAV+ILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 161 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFAAFNEELFKEITQLLT 220
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 221 LDNFRHNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 280
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMGAVPKAG FPPL AHGPFQ
Sbjct: 281 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGAVPKAGGFPPLGAHGPFQ 340
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PTPAALPTSLAGWMANPSPVPHPS SAGPI L AAN AAILKRPRTPPTNN AMDYQTA
Sbjct: 341 PTPAALPTSLAGWMANPSPVPHPSASAGPIGLAAAN-NAAILKRPRTPPTNNPAMDYQTA 399
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DS+HVLKR+RPFG+SDEV+NL VN+LPVAY+ QS GQSSYS+DDLPKT+VMTLNQGS VK
Sbjct: 400 DSDHVLKRTRPFGLSDEVSNLPVNLLPVAYSGQSHGQSSYSSDDLPKTIVMTLNQGSIVK 459
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHP+QQILL+VGTNMGDVM+W++GSRERIA ++FKVWELG+CS+ LQASLS+DY+AS
Sbjct: 460 SMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAQRNFKVWELGSCSVALQASLSNDYSAS 519
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRV+WSPDGTL VAYSKHIVH+Y+Y GGD+LRNHLEIEAH GSVNDLAFSYPNKQL V
Sbjct: 520 VNRVVWSPDGTLCSVAYSKHIVHIYSYQGGDDLRNHLEIEAHAGSVNDLAFSYPNKQLCV 579
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLYDN
Sbjct: 580 VTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLYDN 639
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGKRS
Sbjct: 640 MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGKRS 699
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VGVVQFDTTKNRFLAAGDEFMIKFWDMDN N+L S++ADGGL ASPCIRFNK+GILLAVS
Sbjct: 700 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNTNMLTSVEADGGLLASPCIRFNKDGILLAVS 759
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TND+G+KILANA+GIRLLRTVE+RTFDASRVASAA+VKAP IG F S N VGTSL +R
Sbjct: 760 TNDSGVKILANAEGIRLLRTVENRTFDASRVASAAVVKAPTIGAFPSTNVTVGTSLADRA 819
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
P AAMVG++ND+RN DVKP+I DEAVEKSRIWKLTEI EPSQCRSL+LPD+L++MRVS
Sbjct: 820 PPVAAMVGINNDTRNLADVKPRIVDEAVEKSRIWKLTEINEPSQCRSLKLPDSLSSMRVS 879
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RLIYTN G+AILALA+NAVHKLWKW RNERN+TGKAT + PQLWQP SGILMTNDISDT
Sbjct: 880 RLIYTNQGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDISDT 939
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 940 NPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 999
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LNVLVSSGADSQLCVWSTDGWE
Sbjct: 1000 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDGWE 1059
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL +P+GR + LADTRVQFHLDQTHLLAVHETQIA+YEAPKLEC+KQ
Sbjct: 1060 KQASKFLQMPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQ 1112
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484207|ref|XP_002285341.2| PREDICTED: topless-related protein 4-like isoform 1 [Vitis vinifera] gi|297738983|emb|CBI28228.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1888 bits (4891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1013 (88%), Positives = 952/1013 (93%), Gaps = 1/1013 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181 WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
P PA LPTSLAGWMANPSPVPHPS SAGP+ L ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241 PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKR RPFGISDEVNNL VNILPVAYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301 DSEHVLKRPRPFGISDEVNNLPVNILPVAYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 360
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 361 SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 420
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 421 VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 479
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCGEDR IKVWDA TG+KQY FEGHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 480 VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDN 539
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 540 MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 599
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 600 VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 659
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF AN VGTS+G+R
Sbjct: 660 TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 719
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
AP AAMVGM++D+R+ DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 720 APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 779
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 780 RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 839
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 840 NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 899
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS LNVLVSSGADSQLCVW+TDGWE
Sbjct: 900 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 959
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL + G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q
Sbjct: 960 KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQ 1012
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562983|ref|XP_003549747.1| PREDICTED: topless-related protein 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1883 bits (4877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 894/1015 (88%), Positives = 959/1015 (94%), Gaps = 3/1015 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK+DRAKAV+ILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKQDRAKAVDILVKDLKVFAAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LDNFRHNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQ--PNGARAPSPVTNPLMGAVPKAGAFPPLSAHGP 238
WQHQLCKNPR NPDIKTLFVDH+CGQ PNGARAPSPVTNPLMGAVPKAG FPPL AHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQVQPNGARAPSPVTNPLMGAVPKAGGFPPLGAHGP 240
Query: 239 FQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
FQPTPAALPTSLAGWMANPSPVPHPS SAGPI L AAN AAILKRPRTPP+NN AMDYQ
Sbjct: 241 FQPTPAALPTSLAGWMANPSPVPHPSASAGPIGLAAAN-NAAILKRPRTPPSNNPAMDYQ 299
Query: 299 TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
TADS+HVLKR+RPFG+SDEV+NL VN+LPVAY+ QS GQSSYS+DDLPKTVVMTLNQGS
Sbjct: 300 TADSDHVLKRTRPFGLSDEVSNLPVNLLPVAYSGQSHGQSSYSSDDLPKTVVMTLNQGSI 359
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
VKSMDFHP+QQILL+VGTNMGDVM+W++GSRERIA ++FKVWELGACS+ LQASLS+DY+
Sbjct: 360 VKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAQRNFKVWELGACSVALQASLSNDYS 419
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
AS+NRV+WSPDGTL VAYSKHIVH+Y+YHGGD+LRNHLEIEAH GSVNDLAFSYPNKQL
Sbjct: 420 ASINRVVWSPDGTLCSVAYSKHIVHIYSYHGGDDLRNHLEIEAHAGSVNDLAFSYPNKQL 479
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
VVTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLY
Sbjct: 480 CVVTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLY 539
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGK
Sbjct: 540 DNMGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGK 599
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RSVGVVQFDTTKNRFLAAGDEF IKFWDMDN N+L S++A+GGL ASPCIRFNK+GILLA
Sbjct: 600 RSVGVVQFDTTKNRFLAAGDEFTIKFWDMDNTNMLTSVEAEGGLLASPCIRFNKDGILLA 659
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
VSTNDNG+KILANA+GIRLLRTVE+RTFDASRVASAA+VKAP IG F S N VGTSL +
Sbjct: 660 VSTNDNGVKILANAEGIRLLRTVENRTFDASRVASAAVVKAPTIGAFPSTNVTVGTSLAD 719
Query: 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
R P AAMVG++ND+RN DVKP+I DE+VEKSRIWKLTEI EPSQCRSL+LPD+L++MR
Sbjct: 720 RAPPVAAMVGINNDTRNLADVKPRIVDESVEKSRIWKLTEINEPSQCRSLKLPDSLSSMR 779
Query: 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
VSRLIYTN G+AILALA+NAVHKLWKW RNERN+TGKAT + PQLWQP SGILMTNDIS
Sbjct: 780 VSRLIYTNQGVAILALAANAVHKLWKWQRNERNTTGKATASIQPQLWQPSSGILMTNDIS 839
Query: 839 DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
DTNPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 840 DTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 899
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LNVLVSSGADSQLCVWSTDG
Sbjct: 900 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNVLVSSGADSQLCVWSTDG 959
Query: 959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
WEKQASKFL +P+GR + LADTRVQFHLDQTHLLAVHETQIA+YEAPKLEC+KQ
Sbjct: 960 WEKQASKFLQMPSGRPPAPLADTRVQFHLDQTHLLAVHETQIALYEAPKLECIKQ 1014
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443059|ref|XP_004139298.1| PREDICTED: topless-related protein 4-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1878 bits (4864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 890/1014 (87%), Positives = 949/1014 (93%), Gaps = 2/1014 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEW+EVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAV+ILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVDILVKDLKVFSAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMG VPKA AFPPLSAHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGGVPKAAAFPPLSAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PTPAALPTSLAGWMANPSPVPHPS SA PI L AANNAA ILKRPRTPPTNN MDYQTA
Sbjct: 241 PTPAALPTSLAGWMANPSPVPHPSASAAPIGLNAANNAA-ILKRPRTPPTNNPTMDYQTA 299
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKRSRPFG+S+EV NL VNILPV Y Q GQSSYS+DDLPK VV TL+QGS VK
Sbjct: 300 DSEHVLKRSRPFGLSEEVTNLPVNILPVGYGNQGHGQSSYSSDDLPKNVVTTLSQGSVVK 359
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHP QQ +L+VGTN+GDVM+WEVG RERIA+++FKVW+L A S+ LQASL+SDYTAS
Sbjct: 360 SMDFHPQQQTILLVGTNVGDVMIWEVGGRERIAIRNFKVWDLAARSVALQASLASDYTAS 419
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
+NRVMWSPDGTLFGVAYSKHIVH+Y+Y GDELRNHLEIEAHVGSVNDLAF Y NKQL +
Sbjct: 420 INRVMWSPDGTLFGVAYSKHIVHIYSYQAGDELRNHLEIEAHVGSVNDLAFLYANKQLCL 479
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCGEDRVIKVWDAVTG KQ+ FEGH++PVYSICPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 480 VTCGEDRVIKVWDAVTGVKQFTFEGHDAPVYSICPHHKENIQFIFSTAADGKIKAWLYDN 539
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPGHSST MAYSADG RLFSCGTNK+GESYLVEWNESEGAVKRTY GLGKRS
Sbjct: 540 MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKDGESYLVEWNESEGAVKRTYQGLGKRS 599
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VGVVQFDTTKNRFLAAGD+F +KFWDMD+VN+L SIDADGGL ASPCIRFNK+G+LLAVS
Sbjct: 600 VGVVQFDTTKNRFLAAGDDFSVKFWDMDSVNILTSIDADGGLPASPCIRFNKDGVLLAVS 659
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TNDNGIKILANA+G R+LRTVE+RTFDASRVASAA+VKAP IG+FG +VG S+G+RT
Sbjct: 660 TNDNGIKILANAEGFRMLRTVENRTFDASRVASAAVVKAPPIGSFGPPAVSVGMSIGDRT 719
Query: 721 AP-AAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRV 779
P AAAMVG++NDSR+ DVKP+IADE+V+KSRIWKLTEI EP+QCRSLRLPDNLTA RV
Sbjct: 720 PPVAAAMVGINNDSRSLADVKPRIADESVDKSRIWKLTEINEPTQCRSLRLPDNLTASRV 779
Query: 780 SRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839
SRLIYTNSGLAILALASNAVHKLW+W RN+RN T KAT + APQLWQPPSGILMTNDISD
Sbjct: 780 SRLIYTNSGLAILALASNAVHKLWRWQRNDRNVTVKATASVAPQLWQPPSGILMTNDISD 839
Query: 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899
TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI
Sbjct: 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGW 959
IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN LNVLVSSGADSQLCVWSTDGW
Sbjct: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNQLNVLVSSGADSQLCVWSTDGW 959
Query: 960 EKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
EKQ +KFL +P+ RT + LADTRVQFH+DQ HLLA+HETQIAIYEAPKLECLKQ
Sbjct: 960 EKQVNKFLQVPSSRTTAPLADTRVQFHIDQIHLLAIHETQIAIYEAPKLECLKQ 1013
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484209|ref|XP_003633079.1| PREDICTED: topless-related protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1862 bits (4822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 885/1013 (87%), Positives = 943/1013 (93%), Gaps = 11/1013 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181 WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
P PA LPTSLAGWMANPSPVPHPS SAGP+ L ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241 PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKR RPFGISDEV AYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301 DSEHVLKRPRPFGISDEV----------AYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 350
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 351 SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 410
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 411 VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 469
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCGEDR IKVWDA TG+KQY FEGHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 470 VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYSVCPHHKENIQFIFSTAIDGKIKAWLYDN 529
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 530 MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 589
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 590 VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 649
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF AN VGTS+G+R
Sbjct: 650 TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 709
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
AP AAMVGM++D+R+ DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 710 APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 769
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 770 RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 829
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 830 NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 889
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS LNVLVSSGADSQLCVW+TDGWE
Sbjct: 890 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 949
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL + G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q
Sbjct: 950 KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQ 1002
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484211|ref|XP_003633080.1| PREDICTED: topless-related protein 4-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1856 bits (4807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 885/1013 (87%), Positives = 942/1013 (92%), Gaps = 11/1013 (1%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFE+ VTNGEWD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEETVTNGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNP+ANPDIKTLFVDHTCGQPNGARAPSPVTNPLMG VPKAG FPPLSAHGPFQ
Sbjct: 181 WQHQLCKNPKANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGTVPKAGGFPPLSAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
P PA LPTSLAGWMANPSPVPHPS SAGP+ L ANNAAAILKRPRTPPTNN AMDYQTA
Sbjct: 241 PAPAPLPTSLAGWMANPSPVPHPSASAGPMGLATANNAAAILKRPRTPPTNNPAMDYQTA 300
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKR RPFGISDEVNNL VNILPVAYT QS GQSSYS+DDLPKTVVM+L QGS V+
Sbjct: 301 DSEHVLKRPRPFGISDEVNNLPVNILPVAYTGQSHGQSSYSSDDLPKTVVMSLPQGSTVR 360
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHPVQQILL+VGTNMGD+M+W++GSRER+A+K+FKVWEL +CSM LQ SL++DY AS
Sbjct: 361 SMDFHPVQQILLLVGTNMGDIMVWDLGSRERLAIKNFKVWELASCSMALQTSLANDYLAS 420
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRVMWSPDGTLFGVAYSKHIVHLY+YH GD+LRNHLEIEAHVGSVNDLAFSYPNK L V
Sbjct: 421 VNRVMWSPDGTLFGVAYSKHIVHLYSYHNGDDLRNHLEIEAHVGSVNDLAFSYPNK-LCV 479
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCGEDR IKVWDA TG+KQY FEGHE+PVYS FIFSTA DGKIKAWLYDN
Sbjct: 480 VTCGEDRFIKVWDANTGSKQYTFEGHEAPVYS----------FIFSTAIDGKIKAWLYDN 529
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPGHSST MAYSADG RLFSCGTNKEG+SY+VEWNESEGAVKRTYHGLGKRS
Sbjct: 530 MGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGDSYIVEWNESEGAVKRTYHGLGKRS 589
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VGVVQFDTTKNRFLAAGDEF++KFWDMDNVNLL + DA+GGL ASPCIRFNKEGILLAVS
Sbjct: 590 VGVVQFDTTKNRFLAAGDEFLVKFWDMDNVNLLMTTDAEGGLPASPCIRFNKEGILLAVS 649
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TN+NGIKILAN +GIRLLRT+E+R+FDASRVASAA+VKAPAIGTF AN VGTS+G+R
Sbjct: 650 TNENGIKILANQEGIRLLRTMENRSFDASRVASAAVVKAPAIGTFPPANPAVGTSIGDRA 709
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
AP AAMVGM++D+R+ DVKP+IADE+ EKSRIWKLTEI E SQCRSLRLPDNLTAMRVS
Sbjct: 710 APVAAMVGMNSDNRSLVDVKPRIADESGEKSRIWKLTEINEQSQCRSLRLPDNLTAMRVS 769
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RL+YTNSG AILALASNAVHKLWKW RN+RN T KAT + APQLWQP SGILMTN+ISDT
Sbjct: 770 RLMYTNSGFAILALASNAVHKLWKWQRNDRNITTKATASVAPQLWQPSSGILMTNEISDT 829
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAVPCFALSKNDSYVMSASGGK+SLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII
Sbjct: 830 NPEDAVPCFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 889
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKR+TGLAFS LNVLVSSGADSQLCVW+TDGWE
Sbjct: 890 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRVTGLAFSPVLNVLVSSGADSQLCVWNTDGWE 949
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL + G+ A+ LADTRVQFH DQ HLLAVHETQIAI+EA KLECL+Q
Sbjct: 950 KQASKFLQVSPGQAAAPLADTRVQFHHDQIHLLAVHETQIAIFEASKLECLRQ 1002
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357478183|ref|XP_003609377.1| WD repeat-containing protein [Medicago truncatula] gi|355510432|gb|AES91574.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1835 bits (4754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 870/1015 (85%), Positives = 935/1015 (92%), Gaps = 6/1015 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VH+LEQ+SGFFFNMRYFE+MVTNGEWDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHRLEQESGFFFNMRYFEEMVTNGEWDEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK DR+KAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKGDRSKAVEILVKDLKVFAAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
L+NFR NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN
Sbjct: 121 LDNFRQNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLM VPK G FPPLSAHGP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMAGVPKVGGFPPLSAHGP-- 238
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAG--PIALTAANNAAAILKRPRTPPTNNSAMDYQ 298
TP ALPTSLAGWMA V HPS SAG PI L ANN AA+LKRPRTPP NN AMDYQ
Sbjct: 239 -TPNALPTSLAGWMAASPQVQHPSASAGVGPIGLAQANNPAALLKRPRTPP-NNPAMDYQ 296
Query: 299 TADSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSA 358
TADS+HV+KR+RPFGISDEVNNL VN+LPVAY+ QS GQSSYS+DDLPKT VMTLNQGS
Sbjct: 297 TADSDHVMKRTRPFGISDEVNNLPVNLLPVAYSSQSHGQSSYSSDDLPKTAVMTLNQGST 356
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
VKSMDFHP+QQILL+VGTNMGDVM+W++GSRERIA +SFKVW+L CS+ LQASLS++Y+
Sbjct: 357 VKSMDFHPLQQILLLVGTNMGDVMVWDIGSRERIAHRSFKVWDLQVCSVALQASLSNEYS 416
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
ASVNRV+WSPDGTL VAYSKHIVH+Y+YHGGD+LRNHLEIEAH GSVNDLAFSYPNKQL
Sbjct: 417 ASVNRVVWSPDGTLCSVAYSKHIVHIYSYHGGDDLRNHLEIEAHAGSVNDLAFSYPNKQL 476
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
VVTCGEDRVIKVWDAVTG KQY FEGHE+PVYS+CPHHKENIQFIFSTATDGKIKAWLY
Sbjct: 477 CVVTCGEDRVIKVWDAVTGAKQYTFEGHEAPVYSVCPHHKENIQFIFSTATDGKIKAWLY 536
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDYDAPGHSST M+YSADG RLFSCGTNKEGES+LVEWNESEGAVKRTYHGLGK
Sbjct: 537 DNMGSRVDYDAPGHSSTTMSYSADGTRLFSCGTNKEGESFLVEWNESEGAVKRTYHGLGK 596
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RS GVVQFDTTKNRFLAAGDEFM+KFWDMD+ NLL S DADGGL ASPCIRFNKEGILLA
Sbjct: 597 RSTGVVQFDTTKNRFLAAGDEFMVKFWDMDSTNLLTSFDADGGLLASPCIRFNKEGILLA 656
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGE 718
VST+DNG+KILANA+GIRLLRTVE+R FDASR ASAA VK P IG F S N VGTSL +
Sbjct: 657 VSTSDNGVKILANAEGIRLLRTVENRAFDASRAASAANVKPPTIGAFPSTNVAVGTSLAD 716
Query: 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
RT P AAMVG++NDSR+ DVKP+I DEAVEKSRIWKLTEI E SQCRSL+LPD L++MR
Sbjct: 717 RTPPVAAMVGLNNDSRSLADVKPRIVDEAVEKSRIWKLTEINEQSQCRSLKLPDGLSSMR 776
Query: 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
VSRLIYTN G+AILALA+NAVHKLWKW +N+RN++GKAT + PQLWQP SGILMTN+I
Sbjct: 777 VSRLIYTNQGVAILALAANAVHKLWKWQKNDRNTSGKATASLQPQLWQPSSGILMTNEIG 836
Query: 839 DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
DTNPEDAV CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 837 DTNPEDAVSCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 896
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
IIAIGM+DSSIQIYNVRVDEVKTKLKGHQKRITGLAFS+ LN+LVSSGADSQLCVWSTDG
Sbjct: 897 IIAIGMDDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHVLNILVSSGADSQLCVWSTDG 956
Query: 959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
WEKQ +KFL +PNGR + LADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ
Sbjct: 957 WEKQTNKFLQMPNGRALAPLADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1011
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087108|ref|XP_002308068.1| predicted protein [Populus trichocarpa] gi|222854044|gb|EEE91591.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1818 bits (4710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1013 (85%), Positives = 935/1013 (92%), Gaps = 3/1013 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKETVH+LEQ+SGF+FNMRYFE+MVTNGEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCK PR+NPDIKTLFVDH+CGQPNGARAPSPVTN LM AVPKAG FPP++ HGPFQ
Sbjct: 181 WQHQLCKTPRSNPDIKTLFVDHSCGQPNGARAPSPVTNSLMDAVPKAGGFPPITGHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PTP +P SLAGWMANPS VPHPS SAGP+ L A NNA A+LKRPR+PPTNN A+DYQTA
Sbjct: 241 PTPT-IPPSLAGWMANPSTVPHPSASAGPMGLAAPNNAVALLKRPRSPPTNNPAIDYQTA 299
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKRSRPFG+SDEVNNL VNILP+AY Q+ GQSSYS+DDLPK VMTL QGSAVK
Sbjct: 300 DSEHVLKRSRPFGLSDEVNNLPVNILPIAYPSQNHGQSSYSSDDLPKNPVMTLAQGSAVK 359
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHP+QQILL+VGT+MGDVM+WE+GSRERI K+FKVW+ S LQASLSSDYTAS
Sbjct: 360 SMDFHPLQQILLLVGTSMGDVMVWELGSRERIGWKNFKVWDHN--SRALQASLSSDYTAS 417
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRV WSPDGTLFGVAYSKHIVH+Y+YHGGD++RNHL+I+AH GSVNDLAFSYPNKQL++
Sbjct: 418 VNRVAWSPDGTLFGVAYSKHIVHVYSYHGGDDIRNHLQIDAHNGSVNDLAFSYPNKQLAI 477
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCG+DR I+VWDAV GT+ + F GHE+PVYS+CPHHKENIQFIFSTA DGKIKAWLYDN
Sbjct: 478 VTCGDDRTIRVWDAVAGTRLFNFLGHEAPVYSVCPHHKENIQFIFSTAADGKIKAWLYDN 537
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
+GSRVDYDAPG+SST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTY+GL KRS
Sbjct: 538 MGSRVDYDAPGNSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRS 597
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
VG V+FDTTKNRFLAA DEFMIKFWDMDNVNLL SIDA+GGL ASPCIRFNKEG LLAVS
Sbjct: 598 VGAVKFDTTKNRFLAAIDEFMIKFWDMDNVNLLTSIDAEGGLPASPCIRFNKEGTLLAVS 657
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TNDN IKILAN+DGIRLLRTVE+RTFDASR ASA++VK P IG F ANA VGTS ++
Sbjct: 658 TNDNSIKILANSDGIRLLRTVENRTFDASRAASASVVKPPPIGNFSPANAPVGTSGDDQA 717
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
A AA MVGM++DSR+ DVKPKI DE+VEKSRIWKLTEI EPSQCRSLRLPD+LT+MRVS
Sbjct: 718 ALAAPMVGMNSDSRSLVDVKPKIQDESVEKSRIWKLTEINEPSQCRSLRLPDSLTSMRVS 777
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RLIYTNSG+AILALASNAVHKLWKW RN+RN +GKA + PQLWQP SGILMTNDISDT
Sbjct: 778 RLIYTNSGVAILALASNAVHKLWKWQRNDRNPSGKANASVPPQLWQPSSGILMTNDISDT 837
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAATFLAFHPQDNNII
Sbjct: 838 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNII 897
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGADSQLCVWSTD WE
Sbjct: 898 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWE 957
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL IP+GR A +LADTRVQFHLDQ HLLAVHETQIAI+EAPKLEC KQ
Sbjct: 958 KQASKFLQIPSGRVAPSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECQKQ 1010
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572487|ref|XP_002527178.1| WD-repeat protein, putative [Ricinus communis] gi|223533443|gb|EEF35191.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1816 bits (4705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1015 (85%), Positives = 947/1015 (93%), Gaps = 4/1015 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
M+SLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNMRYFEDMVTNGEWDEVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSAR IMLAELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARNIMLAELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPVTNPLMGA+PKAG FPPLSAH PFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPVTNPLMGALPKAGGFPPLSAHVPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
PTPAALPTSLAGWMAN S VPHPS SAGPI L+A NN AAI+KRPRTPPTNN +MDYQTA
Sbjct: 241 PTPAALPTSLAGWMANSSAVPHPSASAGPIGLSAPNN-AAIIKRPRTPPTNNPSMDYQTA 299
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSE+VLKR+RPFGISDEV+NL VNILPVAY+ Q+ GQSSYS+DDLPKT+VM LNQGSAVK
Sbjct: 300 DSENVLKRTRPFGISDEVSNLPVNILPVAYSSQNHGQSSYSSDDLPKTLVMALNQGSAVK 359
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHPVQQILL+VGT+MGDVM+WE+GSRERIA+K+FKVWELGA S+ LQASL++DYTAS
Sbjct: 360 SMDFHPVQQILLLVGTSMGDVMVWELGSRERIALKNFKVWELGARSVGLQASLTNDYTAS 419
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRV+WSPDG LFGVAYSKHIVHLY+YH GD+++N+ EIEAH GSVNDLAFSY + +LSV
Sbjct: 420 VNRVLWSPDGALFGVAYSKHIVHLYSYHVGDDVKNYREIEAHNGSVNDLAFSY-HDRLSV 478
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
++CGEDRVIKVWD +TG ++ FEGHE+PVYS+CPHHKE+IQFIFSTATDGKIKAWLYDN
Sbjct: 479 ISCGEDRVIKVWDPLTGNPKFTFEGHEAPVYSVCPHHKESIQFIFSTATDGKIKAWLYDN 538
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
LGSRVDYDAPGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEG VKR+Y GLGKRS
Sbjct: 539 LGSRVDYDAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGTVKRSYIGLGKRS 598
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
+GVVQFDTTKNRFLAAGDEFM+KFWDMDN+NLL SIDA+GGL ASPCIRFNK+G LLA+S
Sbjct: 599 MGVVQFDTTKNRFLAAGDEFMVKFWDMDNINLLTSIDAEGGLPASPCIRFNKDGSLLAIS 658
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG--E 718
TN+N IK LAN++GIRLLRTVE+RTFDASR ASAA+VK PAIG F + NA GTS+ E
Sbjct: 659 TNENSIKFLANSEGIRLLRTVENRTFDASRAASAAVVKGPAIGNFPTGNATAGTSISIVE 718
Query: 719 RTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR 778
R A A MVG++NDSR DVKP+IADE E SRIWKLTE+ EPSQCRSLRLPDNLTAMR
Sbjct: 719 RAAAVAPMVGINNDSRILADVKPRIADEPTENSRIWKLTEVNEPSQCRSLRLPDNLTAMR 778
Query: 779 VSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838
VSRLIYTNSGL++L LASNAVHKLWKW RN+RN +GKAT + PQLWQP SGILMTNDIS
Sbjct: 779 VSRLIYTNSGLSLLGLASNAVHKLWKWQRNDRNLSGKATASVVPQLWQPSSGILMTNDIS 838
Query: 839 DTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
DTNPED+VPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN
Sbjct: 839 DTNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958
IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGAD+QLCVWSTDG
Sbjct: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADAQLCVWSTDG 958
Query: 959 WEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
WEKQASKFL IP GR +++L DTRVQFHLDQTHLLAVHE++IAIYEAPKLEC+KQ
Sbjct: 959 WEKQASKFLQIPPGRGSASLVDTRVQFHLDQTHLLAVHESRIAIYEAPKLECVKQ 1013
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142595|ref|XP_002324641.1| predicted protein [Populus trichocarpa] gi|222866075|gb|EEF03206.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1779 bits (4607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1013 (84%), Positives = 934/1013 (92%), Gaps = 9/1013 (0%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKETVH+LEQ+SGF+FNMRYFE+MVTNGEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKETVHRLEQESGFYFNMRYFEEMVTNGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVF+AFNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFAAFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFRDNEQLSKYGDTKSARGIML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121 LENFRDNEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPTLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCK+PR+NPDIKTLFVDH+CGQPNGARAPSPVTN LMG VPK+G FP ++ HGPFQ
Sbjct: 181 WQHQLCKSPRSNPDIKTLFVDHSCGQPNGARAPSPVTNSLMGGVPKSGGFPSITGHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTA 300
P PAALP+SLAGWMANPS SAGP+ L A N AILK PRTPPTNN A+DYQTA
Sbjct: 241 PAPAALPSSLAGWMANPSA------SAGPLGL--APNNTAILKHPRTPPTNNPAIDYQTA 292
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVK 360
DSEHVLKR RPFG+SDEVN L +NI+P+AYT Q+ GQ+SYS+DDLPK VM LNQGSAVK
Sbjct: 293 DSEHVLKRPRPFGLSDEVN-LPINIMPMAYTSQNHGQNSYSSDDLPKNPVMALNQGSAVK 351
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
SMDFHPVQQILL+VGTNMG+VM+WE+GSRERIA ++FKVW+L A S LQASLS+DYTAS
Sbjct: 352 SMDFHPVQQILLLVGTNMGEVMVWELGSRERIAGRNFKVWDLNARSRALQASLSNDYTAS 411
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
VNRV WSPDGTLFGVAYSKHI+H+Y+YHGGD++RNHLE++AH G+VNDLAF+YPNKQL V
Sbjct: 412 VNRVAWSPDGTLFGVAYSKHIMHVYSYHGGDDIRNHLEMDAHNGNVNDLAFAYPNKQLVV 471
Query: 481 VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540
VTCG+DR I+VWDA+ GT+ + F GH++PVYS+CPHHKENIQFIFSTATDGKIKAWLYDN
Sbjct: 472 VTCGDDRTIRVWDAIVGTRLFNFVGHDAPVYSVCPHHKENIQFIFSTATDGKIKAWLYDN 531
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600
GSRVDY+APGHSST MAYSADG RLFSCGTNKEGES+LVEWNESEGAVKRTY+GL KRS
Sbjct: 532 AGSRVDYNAPGHSSTTMAYSADGTRLFSCGTNKEGESHLVEWNESEGAVKRTYNGLAKRS 591
Query: 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660
GVV+FDTTKNRFLAAGD+FMIKFWDMDN NLL +IDA+GGL ASPCIRFNKEG LLAVS
Sbjct: 592 GGVVKFDTTKNRFLAAGDDFMIKFWDMDNNNLLTTIDAEGGLPASPCIRFNKEGTLLAVS 651
Query: 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720
TNDN IKILAN+DGIRLLRTVESRTFDASR +SAA+ KAPAIGTF ANA VGTS+ +
Sbjct: 652 TNDNSIKILANSDGIRLLRTVESRTFDASRASSAAVAKAPAIGTFPPANATVGTSIDNQA 711
Query: 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780
APAA MVGM++D+R+ DVKPKI DE++EKSRIWKLTEI EPSQCRSLRLPD+LTAMRVS
Sbjct: 712 APAAPMVGMNSDNRSLVDVKPKIQDESIEKSRIWKLTEINEPSQCRSLRLPDSLTAMRVS 771
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
RLI+TNSG+AILALASNAVHKLWKW RN+RN GKAT + PQLWQP SGILMTNDISDT
Sbjct: 772 RLIFTNSGVAILALASNAVHKLWKWQRNDRNLPGKATASVPPQLWQPSSGILMTNDISDT 831
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM PPPAATFLAFHPQDNNII
Sbjct: 832 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATFLAFHPQDNNII 891
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS++LNVLVSSGADSQLCVWSTD WE
Sbjct: 892 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSHSLNVLVSSGADSQLCVWSTDAWE 951
Query: 961 KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
KQASKFL IP GR AS+LADTRVQFHLDQ HLLAVHETQIAI+EAPKLECLKQ
Sbjct: 952 KQASKFLQIPTGRVASSLADTRVQFHLDQIHLLAVHETQIAIFEAPKLECLKQ 1004
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1015 | ||||||
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.986 | 0.885 | 0.726 | 0.0 | |
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.966 | 0.867 | 0.618 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.687 | 0.623 | 0.744 | 0.0 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.249 | 0.341 | 0.389 | 1.3e-67 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.284 | 0.211 | 0.271 | 4e-14 | |
| DICTYBASE|DDB_G0278353 | 530 | smu1 "suppressor of mec-8 and | 0.159 | 0.305 | 0.295 | 8.5e-14 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.270 | 0.476 | 0.25 | 1.8e-11 | |
| UNIPROTKB|G4MUL1 | 317 | MGG_07284 "Target-rapamycin co | 0.234 | 0.750 | 0.280 | 1.6e-12 | |
| ASPGD|ASPL0000006405 | 1878 | AN6960 [Emericella nidulans (t | 0.249 | 0.134 | 0.256 | 8.6e-11 | |
| TAIR|locus:2159562 | 589 | AT5G08560 "AT5G08560" [Arabido | 0.186 | 0.320 | 0.235 | 2.1e-11 |
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3886 (1373.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 739/1017 (72%), Positives = 845/1017 (83%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDK DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+NSRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+CG PNGARAPSPV NPL+G +PKAG FPPL AHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSAMDYQTA 300
PT + +PT LAGWM++PS VPHP+ SAG K PRTPPTN S +DY +A
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAG-AIALGGPSIPAALKHPRTPPTNAS-LDYPSA 298
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSY--STDDLPKTVVMTLNQGSA 358
DSEHV KR+RP GISDEVN L VN+LP++++ Q+ G S + DDLPKTV TL+QGS+
Sbjct: 299 DSEHVSKRTRPMGISDEVN-LGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGSS 357
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+ K+FKVW+L CSMPLQA+L +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND++FS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
V+TCG+D+ IKVWDA TG K++ FEGHE+PVYS+CPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDYDAPG T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G K
Sbjct: 538 DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RS+GVVQFDTTKNR+LAAGD+F IKFWDMD V LL +ID DGGLQASP IRFNKEG LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG- 717
VS N+N IKI+AN+DG+RLL T E+ + ++S+ PAI + +A A TS G
Sbjct: 658 VSGNENVIKIMANSDGLRLLHTFENISSESSK---------PAINSIAAAAAAAATSAGH 708
Query: 718 -ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776
+R+A ++ GM+ DSRN DVKP I +E+ +KS+IWKLTE++EPSQCRSLRLP+NL
Sbjct: 709 ADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV 768
Query: 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836
++SRLI+TNSG AILALASNA+H LWKW RNERN+TGKAT + PQ WQP SGILMTND
Sbjct: 769 AKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTND 828
Query: 837 ISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQD 896
+++TNPE+AVPCFALSKNDSYVMSASGGKISLFN HPQD
Sbjct: 829 VAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD 888
Query: 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
NNIIAIGM+DS+IQIYNVRVDEVK+KLKGH KRITGLAFSN LNVLVSSGAD+QLCVW+T
Sbjct: 889 NNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948
Query: 957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQ 1013
DGWEKQ SK L +P GR SA +DTRVQFH DQ H L VHETQ+AIYE KLEC+KQ
Sbjct: 949 DGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQ 1005
|
|
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3169 (1120.6 bits), Expect = 0., P = 0.
Identities = 635/1027 (61%), Positives = 758/1027 (73%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKE+VHKLEQ+SGFFFN++YFE+ GEWDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ DRAKAVEIL KDLKVF+ FNE+L+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IM ELKKLIEANPLFR+KL FPS K SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHG-PF 239
WQHQLCKNPR NPDIKTLF+DH+C NGARA +PV P+ AV + F PL HG PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239
Query: 240 QPTPAALPTS--LAGWMANPSP---VPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSA 294
Q PA P + LAGWMANP+P VP +A P K PR P +
Sbjct: 240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNEL--KHPRAPSNSLGL 297
Query: 295 MDYQTADSEHVLKRSRPFGISDEVNNLSVNILPV-AYTPQSLGQSSYSTDDLPKTVVMTL 353
MDYQ+AD E ++KR R S+EV P ++ P SL DDLP+ VV T+
Sbjct: 298 MDYQSADHEQLMKRLRSAQTSNEVT------YPAHSHPPASL-------DDLPRNVVSTI 344
Query: 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL 413
QGS V SMDFHP LL VG + G+V LWEVGSRE++ + FK+W + ACS+ Q S+
Sbjct: 345 RQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSI 404
Query: 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY 473
+ + SV RV WSPDG L GV+++KH++H+Y Y G D LR HLEI+AHVG VNDLAF++
Sbjct: 405 VKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAH 463
Query: 474 PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533
PNKQ+ VVTCG+D++IKVWD ++G K + FEGHE+PVYSICPH KENIQFIFSTA DGKI
Sbjct: 464 PNKQMCVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKI 522
Query: 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593
KAWLYDN+GSRVDYDAPG T M YSADG+RLFSCGT+KEG+S+LVEWNESEGA+KRTY
Sbjct: 523 KAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTY 582
Query: 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653
G K+S GVVQFDTT+NRFLA G++ IKFW+MDN NLL ++A+GGL P +RFNK+
Sbjct: 583 LGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKD 642
Query: 654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR------VASAAIVKA--PAIGTF 705
G LLAV+T DNG KILAN DG+R LR E+R+F+AS+ V+++A+ + PAIG
Sbjct: 643 GNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKI 702
Query: 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQC 765
+A G P G+ SR T KP+ D +V+KS+ +LTEI +P+QC
Sbjct: 703 EHMDA------GSPARPTPIPNGIEAMSR--TMEKPRNLD-SVDKSKPLELTEIVDPTQC 753
Query: 766 RSLRLPDNLTAM-RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824
R + +PD+ ++ +V+RL+YTNSG+ +LAL SN V +LWKW RNE+N TGKAT + PQ
Sbjct: 754 RQVTMPDSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQH 813
Query: 825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXX 884
WQP SG+LM ND+ + NPE +VPC ALSKNDSYVMSA GGK+SLFN
Sbjct: 814 WQPNSGLLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPP 872
Query: 885 XXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944
HPQDNNIIAIGMEDSSI IYNVRVDEVKTKLKGHQK ITGLAFS LN+LVS
Sbjct: 873 PASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVS 932
Query: 945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYE 1004
SGAD+QL W+ D WEK+ S + +P G+ + + DTRVQFH DQ LL HETQ+AIY+
Sbjct: 933 SGADAQLFFWTADSWEKKKSSAIQLPPGK--APVGDTRVQFHNDQIQLLVSHETQLAIYD 990
Query: 1005 APKLECL 1011
A K+EC+
Sbjct: 991 ASKMECI 997
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2785 (985.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 525/705 (74%), Positives = 602/705 (85%)
Query: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGF 60
MSSLSRELVFLILQFLDEEKFKETVHKLEQ+SGFFFNM+YFED V NG WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ DR KAV+ILVKDLKVFS FNE+LFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
LENFR+NEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+L+ SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQ 240
WQHQLCKNPR NPDIKTLFVDH+C PN ARAPSPV NPL+G++PKA FPPL AHGPFQ
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 241 PTPAALPTSLAGWMANPSPVPHPSPSAGPXXXXXXXXXXXXXKRPRTPPTNNSAMDYQTA 300
PTP+ +PT LAGWM++PS VPHP+ S GP K PRTPP+N SA+DY +
Sbjct: 241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAAL-KHPRTPPSN-SAVDYPSG 298
Query: 301 DSEHVLKRSRPFGISDEVNNLSVNILPVAYTPQSLG--QSSYSTDDLPKTVVMTLNQGSA 358
DS+HV KR+RP GISDEV+ L VN+LP+ + Q+ G Q+ + DDLPKTV TL+QGS+
Sbjct: 299 DSDHVSKRTRPMGISDEVS-LGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSS 357
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
SMDFHP++Q LL+VGTN+GD+ LWEVGSRER+ K+FKVW+L CSMPLQA+L +
Sbjct: 358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417
Query: 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478
SVNRV+WSPDG+LFGVAYS+HIV LY+YHGG+++R HLEI+AHVG VND+AFS PNKQL
Sbjct: 418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
V TCG+D+ IKVWDA TG K+Y FEGHE+PVYSICPH+KENIQFIFSTA DGKIKAWLY
Sbjct: 478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
DN+GSRVDY+APG T MAYSADG RLFSCGT+K+GES++VEWNESEGAVKRTY G K
Sbjct: 538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658
RS+GVVQFDTTKNR+LAAGD+F IKFWDMD + LL +IDADGGLQASP IRFNKEG LLA
Sbjct: 598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657
Query: 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVA--SAAIVKAPA 701
VS NDN IK++AN+DG+RLL TVE+ + ++S+ A S +V+ PA
Sbjct: 658 VSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPA 702
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 427 (155.4 bits), Expect = 1.3e-67, Sum P(2) = 1.3e-67
Identities = 102/262 (38%), Positives = 142/262 (54%)
Query: 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814
K EI +PSQC +L LPD + +++RL Y+ SG ILALA +A HKLW W ++ N
Sbjct: 368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426
Query: 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNXXXX 874
K P+L QP SG M N+++ T+ + + CFA+ SY+ S SGGKI++F+
Sbjct: 427 KENVYPKPRLHQPQSGKTMENEMA-TSVQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483
Query: 875 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLA 934
P D ++A+G++D SI I+ + +VK KL+GH ++IT LA
Sbjct: 484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541
Query: 935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT---IPNGRTASALADTRVQFHLDQTH 991
FS NVLVSS +D +LC+WST W K SK T S T +QF Q
Sbjct: 542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601
Query: 992 LLAVHETQIAIYEAPKLECLKQ 1013
LL VH+ I +YE L+C Q
Sbjct: 602 LLVVHDGWIGLYEVRTLDCRLQ 623
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 4.0e-14, Sum P(2) = 4.0e-14
Identities = 85/313 (27%), Positives = 141/313 (45%)
Query: 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
+ KVW + LQ SL + V V +SPDG K+ V L+ G+ L+
Sbjct: 899 TIKVWN--PATGELQQSLEGR-SGWVKSVAFSPDGKKLASGSEKNTVKLWNPATGELLQT 955
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
+E H SV +AFS KQL+ + D IK+W++ TG Q F+GH+ + ++
Sbjct: 956 ---LEGHSQSVRSVAFSPDGKQLA--SSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVA- 1009
Query: 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNK 573
+ + + S + D IK W D S + HS ++ +A+S D +L S
Sbjct: 1010 -FSPDGKHLVSGSDDNTIKLW--DLATSELQQSLEDHSRSVHAVAFSPDDKQLASSSL-- 1064
Query: 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EFMIKFWDMDNVNL 632
+S + W+ + G ++RT G + V V F + + LA+ + IK W+ L
Sbjct: 1065 --DSTIKLWDSATGELQRTLEG-HSQGVRSVTF-SPDGKLLASNSYDGTIKLWNPLTGEL 1120
Query: 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692
++ S + F+ +G LA D+ IK+ +A G LL+T+E + V
Sbjct: 1121 QQTLTGRSDWVDS--VAFSPDGKQLASGYYDSTIKLWDSATG-ELLQTLEGHSDRIQSVV 1177
Query: 693 SAAIVKAPAIGTF 705
+ K A G++
Sbjct: 1178 FSPDGKLLASGSY 1190
|
|
| DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 8.5e-14, Sum P(3) = 8.5e-14
Identities = 55/186 (29%), Positives = 85/186 (45%)
Query: 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFNM----RYFEDMVTNGEWDEVEKYLSGF 60
S++++ LILQFL E ++ L++++G N F + V NG WD V
Sbjct: 16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLT 120
T V R S + ++ +Q +E L K E+ ++ N + + L
Sbjct: 70 TVVSTLRLSTTLLMDLYEQ-IVELL----HLKEYELCKYLIRKTEPLNYMKLNQQERYLK 124
Query: 121 LENFRDNEQLSKYGDTKSARGIMLAELKK-LIEANPLFRDKLQFPSLKNSRLRTLINQSL 179
LEN E + GD GI + +K LIE L + + PS SRL +L++QSL
Sbjct: 125 LENHLQREYID-LGDFYKY-GITTEKRRKQLIEQ--LNNEIITVPS---SRLLSLLSQSL 177
Query: 180 NWQ-HQ 184
+WQ HQ
Sbjct: 178 HWQKHQ 183
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 75/300 (25%), Positives = 130/300 (43%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+ A+V V +S D L A V ++ G L++ LE H V + FS+ ++
Sbjct: 295 HEAAVLSVSYSHDSRLLASASDDRTVKIWDTETGS-LQHTLE--GHSDLVRSVIFSHDSR 351
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
L+ + D +K+WD TG+ Q+ EGH V S+ H Q + S + D +K W
Sbjct: 352 LLASAS---DSTVKIWDTGTGSLQHTLEGHRDWVRSVIFSHDS--QLLASASDDSTVKIW 406
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + + GH + + +S D L S +S + W+ G+++ T
Sbjct: 407 --DTGTGSLQHTLEGHRDWVRSVIFSHDSQLLASASD----DSTVKIWDTGTGSLQHTLE 460
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654
G + V V F +A D+ ++ WD + + +++ L S + F+ +
Sbjct: 461 G-HRDWVRSVIFSHDSRLLASASDDRTVRIWDTEKGSHKHTLEGHSSLVTS--VSFSHDS 517
Query: 655 ILLAVSTNDNGIKIL-ANADGIR----LLRTVESRTFD-ASRVASAAIVKAPAIGTFGSA 708
LLA ++ND ++I A ++ L T+E+ FD A+ + VKA G A
Sbjct: 518 RLLASASNDQTVRIWDIEARSLQHTFDLDATIEAMRFDKATSLWIQVTVKASIRSAMGMA 577
|
|
| UNIPROTKB|G4MUL1 MGG_07284 "Target-rapamycin complex subunit LST8" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 75/267 (28%), Positives = 111/267 (41%)
Query: 396 SFKVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453
+ + WE G CS +Q D + VNR+ SPD A H V LY +
Sbjct: 13 TIRFWEALSGICSRTIQ---HPD--SQVNRLCISPDKRFLAAA-GHHTVKLYDIKSTNP- 65
Query: 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
L E H G+V +AF K + VT ED +K+W+ TGT Q + H+SPV +
Sbjct: 66 NALLTFEGHTGNVTGVAFHCEGKWM--VTSSEDGTVKIWETRTGTIQRSYN-HQSPVNDV 122
Query: 514 CPHHKENIQFIFSTATDGKIKAW-LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572
H + I S G I+ W L DN + S + + + DG+ L C N
Sbjct: 123 VIHPNQGE--IISCDRAGTIRLWDLADNKCTSEMVPEEDVSVSSLTVATDGSLL--CAAN 178
Query: 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQF---DTTKNRFLAAGDEFMIKFWDMDN 629
G ++ W S+G ++RT + + QF D R L + D + D+
Sbjct: 179 NRGNVFV--WTLSQG-LERTI------ATAMTQFSAHDQYITRVLLSPDVKKLATCSADH 229
Query: 630 VNLLASIDADGGLQASPCIRFNKEGIL 656
+ +D + LQA + F E L
Sbjct: 230 TAKIWEVDVEPTLQAGKAVPFELEATL 256
|
|
| ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 71/277 (25%), Positives = 129/277 (46%)
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457
K+W+ S LQ L + VN V +SPD L A V ++ G R
Sbjct: 414 KIWDTRTGS--LQNVLEG-HDDCVNSVSFSPDSRLLASASDDRTVKIWHAATGSLQRT-- 468
Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517
+E H V + FS+ ++ ++ + +D +K+WD T Q E H++ V S+ H
Sbjct: 469 -LEGHNDWVRSVVFSHDSRLIA--SASDDMTVKIWDTATVPLQNNLESHDNWVRSVVFSH 525
Query: 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM--MAYSADGARLFSCGTNKEG 575
+ + S + D +K W D ++ GH + +++S D +RL + ++ +G
Sbjct: 526 DSRL--LASASDDMTVKIW--DTATGSLENTLEGHDDRVNSVSFSPD-SRLLASASD-DG 579
Query: 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635
+ W + G V+ T+ G G+ ++ + F T N +A D+ +K WDM+ +L +
Sbjct: 580 TVKI--WYAATGTVQHTFDGSGRVAISLA-FSHTSNLLASAMDDGTVKIWDMEIYSLRHT 636
Query: 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672
D D +Q I+F+K + ++ TN I++ A +
Sbjct: 637 FDLDHEIQR---IQFDKS--MSSLITNVGRIQLDARS 668
|
|
| TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 48/204 (23%), Positives = 94/204 (46%)
Query: 7 ELVFLILQFLDEEKFKETVHKLEQDSGFFFN---MRYFEDMVTNGEWDEVEKYLSGFTKV 63
E V +I + L + +T LE++SG + ++ F V +G+WD+ K L
Sbjct: 67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126
Query: 64 DDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLEN 123
D+ F + +QK+LE L A A+ L ++ + + + + L++ +
Sbjct: 127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185
Query: 124 FRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQH 183
F + + ++ ++R +L EL+ L+ A+ + +K RL L+ SL+ Q
Sbjct: 186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHIQR 236
Query: 184 QLCK-NPRANPDIKTLFVDHTCGQ 206
C + + D+ +L+ DH CG+
Sbjct: 237 DSCVFHNTLDSDL-SLYSDHQCGK 259
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WV90 | TPR1_ARATH | No assigned EC number | 0.7458 | 0.9773 | 0.8857 | no | no |
| Q94AI7 | TPL_ARATH | No assigned EC number | 0.7531 | 0.9862 | 0.8850 | no | no |
| Q27GK7 | TPR4_ARATH | No assigned EC number | 0.7640 | 0.9960 | 0.8907 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1015 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-32 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-21 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-19 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-16 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 7e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-13 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 8e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.003 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 0.003 | |
| pfam10607 | 144 | pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif | 0.004 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-32
Identities = 73/315 (23%), Positives = 122/315 (38%), Gaps = 40/315 (12%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
V + F P ++L + + KVW+L + L +L
Sbjct: 10 GGVTCVAFSPDGKLLATGSGD-----------------GTIKVWDL--ETGELLRTLKG- 49
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
+T V V S DGT S + L+ G+ +R + H V+ +AFS P+
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFS-PDG 105
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
++ + + D+ IKVWD TG GH V S+ F+ S++ DG IK W
Sbjct: 106 RI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTIKLW 162
Query: 537 LYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594
D + GH+ +A+S DG +L S ++ G L W+ S G T
Sbjct: 163 --DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKCLGTLR 216
Query: 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKE 653
G V F + ++ I+ WD+ + ++ + + ++ +
Sbjct: 217 GHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT---SLAWSPD 272
Query: 654 GILLAVSTNDNGIKI 668
G LA + D I+I
Sbjct: 273 GKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (248), Expect = 5e-22
Identities = 80/373 (21%), Positives = 143/373 (38%), Gaps = 35/373 (9%)
Query: 306 LKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYS-------TDDLPKTVVMTLNQGSA 358
++ + S+N L + S + ++ +
Sbjct: 8 SSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDS 67
Query: 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418
+ S+ F P ++LL ++ G + LW++ + E++ SL +
Sbjct: 68 ITSIAFSPDGELLLSGSSD-GTIKLWDLDNGEKL-----------------IKSLEGLHD 109
Query: 419 ASVNRV-MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
+SV+++ + SPDG +A S + + + +E H SV LAFS P+ +
Sbjct: 110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGK 168
Query: 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537
L D IK+WD TG GH PV S+ + I S ++DG I+ W
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWD 227
Query: 538 YDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
G + GHS S + ++S DG+ L S +G L W+ +
Sbjct: 228 LST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTIRL--WDLRSSSSLLRTLSG 282
Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656
SV V F + + ++ WD++ LL+S+ G + F+ +G L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342
Query: 657 LAVS-TNDNGIKI 668
L ++D I++
Sbjct: 343 LVSGGSDDGTIRL 355
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 51/206 (24%), Positives = 83/206 (40%), Gaps = 37/206 (17%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---------------------- 394
S V S+ F P +IL + + +W+V + + +
Sbjct: 94 SYVSSVAFSPDGRILSSSSRD-KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 395 ----KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450
+ K+W+L A+L+ +T VN V +SPDG + S + L+ G
Sbjct: 153 SSQDGTIKLWDLRTGK--CVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209
Query: 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
L + H VN +AFS P+ L + + ED I+VWD TG GH + V
Sbjct: 210 KCLG---TLRGHENGVNSVAFS-PDGYL-LASGSEDGTIRVWDLRTGECVQTLSGHTNSV 264
Query: 511 YSICPHHKENIQFIFSTATDGKIKAW 536
S+ + + + S + DG I+ W
Sbjct: 265 TSLAWS--PDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-19
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 23/220 (10%)
Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI- 513
++ H G V +AFS K L T D IKVWD TG +GH PV +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVA 58
Query: 514 -CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM--AYSADGARLFSCG 570
++ S ++D I+ W + GH+S + A+S DG L S
Sbjct: 59 ASADGT----YLASGSSDKTIRLWDLETGECVRTLT--GHTSYVSSVAFSPDGRILSSSS 112
Query: 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629
+K + W+ G T G V V F F+A+ + IK WD+
Sbjct: 113 RDKT----IKVWDVETGKCLTTLRG-HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRT 166
Query: 630 VNLLASIDA-DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
+A++ G + + F+ +G L S++D IK+
Sbjct: 167 GKCVATLTGHTGEVN---SVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.8 bits (203), Expect = 2e-16
Identities = 80/359 (22%), Positives = 137/359 (38%), Gaps = 47/359 (13%)
Query: 304 HVLKRSRPFGISDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTV----------VMTL 353
+ S P + + S ++ +A++P G+ S L T+ + TL
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTL 194
Query: 354 -NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412
V S+ F P +L+ G++ G + LW++ + + + S
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR------------------S 236
Query: 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472
S ++ SV +SPDG+L S + L+ L L H SV +AFS
Sbjct: 237 TLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFS 293
Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD 530
K L + D +++WD TG +GHE PV S+ + + + D
Sbjct: 294 PDGKLL--ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDD 350
Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTM-MAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589
G I+ W + GHS+ + +++S DG + S T+ + W+ S G++
Sbjct: 351 GTIRLWDLRT--GKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT----VRLWDLSTGSL 404
Query: 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648
R G R V + F + + I+ WD+ S DG + AS
Sbjct: 405 LRNLDGHTSR-VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSS 462
|
Length = 466 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 7e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 34 FFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDRAK 92
F + +++ G+WDE ++LS R S K+ FE+RKQK+LE + + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 8e-15
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
V A S + ++S+S G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
G ED +I+++++R E L GH +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 11/173 (6%)
Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
V C A S + + + SG G I ++++ T + + T +A + +
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961
D +I+++++ E L GH ++ +AFS +L SS D + VW +
Sbjct: 69 GSS-DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---- 123
Query: 962 QASKFLTIPNGRTASALADTRVQFHLDQTHLL-AVHETQIAIYEAPKLECLKQ 1013
K LT G T + V F D T + + + I +++ +C+
Sbjct: 124 -TGKCLTTLRGHTDWVNS---VAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
D V A S + ++V S+S G I L+++ T K + T +AF P D +
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLL 193
Query: 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
D +I+++++ + L+GH+ + +AFS +L S D + VW E
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-13
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901
V A S + + S+S I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961
+D +I+++++R + L GH + +AFS L+SS +D + +W +
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 962 QAS 964
+
Sbjct: 212 LGT 214
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (163), Expect = 2e-11
Identities = 57/245 (23%), Positives = 94/245 (38%), Gaps = 11/245 (4%)
Query: 452 ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESP 509
+ L + H S+ +AFS + L ++ D IK+WD G K + H+S
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSPDGELL--LSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 510 VYSICPHHKE-NIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLF 567
V + + N + S++ DG +K W G + + S T +A+S DG L
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171
Query: 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627
S + + W+ G T G + + + I+ WD+
Sbjct: 172 SGSSLD---GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 628 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFD 687
LL S + G S F+ +G LLA ++D I++ LLRT+ +
Sbjct: 229 STGKLLRSTLS--GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286
Query: 688 ASRVA 692
VA
Sbjct: 287 VLSVA 291
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.1 bits (157), Expect = 8e-11
Identities = 80/393 (20%), Positives = 160/393 (40%), Gaps = 32/393 (8%)
Query: 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEG-- 654
+ S+ + F L+ + IK WD+DN L+ S++ S + +G
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714
ILLA S+ D +K+ + +L+RT+E + + +A + K A G S + +
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG--SSLDGTIKL 182
Query: 715 SLGERTAPAAAMVGMSND--SRNFTDVKPKIADEAVEKS--RIWKLTEITEPSQCRSLRL 770
P + + G ++ S F+ + R+W L+ S
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Query: 771 PDNLTA----------------MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814
+++ +R+ L ++S L L+ S++V + P + ++G
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 815 KATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLFNMM 872
+++ +LW +G L + ++ E V + S + S ++S G I L+++
Sbjct: 303 --SSDGTVRLWDLETGKL-LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR 359
Query: 873 TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITG 932
T K + T ++F P D +++ G D +++++++ + L GH R+T
Sbjct: 360 TGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTS 417
Query: 933 LAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 965
L FS L S +D+ + +W K S
Sbjct: 418 LDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (149), Expect = 8e-10
Identities = 34/158 (21%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 840 TNPEDAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 897
D V A S + ++++ G I L+++ T K + + + + +F P D
Sbjct: 195 AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DG 253
Query: 898 NIIAIGMEDSSIQIYNVRVDEVKTK-LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956
+++A G D +I+++++R + L GH + +AFS +L S +D + +W
Sbjct: 254 SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313
Query: 957 DGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994
+ + +S L G +S + F D + L++
Sbjct: 314 ETGKLLSSLTLKGHEGPVSS------LSFSPDGSLLVS 345
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 16/181 (8%)
Query: 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-LYDNLGSRVDYDAPGHSSTMM--AY 559
+GH V + + + + + + DG IK W L R GH+ + A
Sbjct: 5 LKGHTGGVTCVAFS--PDGKLLATGSGDGTIKVWDLETGELLRTLK---GHTGPVRDVAA 59
Query: 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619
SADG L S ++K + W+ G RT G V V F ++ +
Sbjct: 60 SADGTYLASGSSDK----TIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRD 114
Query: 620 FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679
IK WD++ L ++ G + F+ +G +A S+ D IK+ + + +
Sbjct: 115 KTIKVWDVETGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKL-WDLRTGKCVA 171
Query: 680 T 680
T
Sbjct: 172 T 172
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.2 bits (126), Expect = 5e-07
Identities = 30/148 (20%), Positives = 62/148 (41%), Gaps = 5/148 (3%)
Query: 824 LWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMTT 879
LW +G + + + S + + ++ AS G + L+++ T K + T
Sbjct: 91 LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150
Query: 880 FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939
+ T LAF P + + D +I+++++R + + L GH ++ LAFS
Sbjct: 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210
Query: 940 N-VLVSSGADSQLCVWSTDGWEKQASKF 966
++ S +D + +W + S
Sbjct: 211 GLLIASGSSDGTIRLWDLSTGKLLRSTL 238
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
E+ LKGH +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
++ LKGH +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
++ H G V +AFS L + +D ++VWD
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
++ H G V +AFS P+ + + + +D IK+WD
Sbjct: 7 TLKGHTGPVTSVAFS-PDGKY-LASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGF 34
EL LIL++L ++ET L+++SG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 12/84 (14%)
Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVR-----VDEVKTK---LKGHQKRITGLAFSNTLN- 940
L F+P + I+A G ED +I+++ + V E+K LKGH+K+I+ + + N +N
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW-NPMNY 138
Query: 941 -VLVSSGADSQLCVWSTDGWEKQA 963
++ SSG DS + +W + EK+A
Sbjct: 139 YIMCSSGFDSFVNIWDIEN-EKRA 161
|
Length = 568 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 9e-04
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964
LKGH +T +AFS +L + D + VW + E +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT 46
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
G +GH PV S+ N + S + DG ++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGN--LLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+G +GH PV S+ + +++ S + DG IK W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 20/80 (25%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 210 ARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGP 269
+P P A A +A P P AL + P P P+P+
Sbjct: 397 PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAA 456
Query: 270 IALTAANNAAAILKRPRTPP 289
AA AAA PR
Sbjct: 457 APAAAARPAAA---GPRPVA 473
|
Length = 700 |
| >gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 71 KIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQL 130
+ FE+R Q+++E + + +A+E ++L F FNE KEI +L+ L F D
Sbjct: 37 NLEFELRLQQFIELIREGKILEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDS 94
Query: 131 SKYGD 135
S Y
Sbjct: 95 SPYKS 99
|
RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 30/90 (33%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 207 PNGA--RAPSPVTNPLMGAVPKAG---AFPPLSAHGPFQPTPAALPTSLAGWMANP-SPV 260
P A RA P P P A A PP +A G +P PAA P A P +P
Sbjct: 717 PAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP-PAAAPGRARPPAAAPGAPT 775
Query: 261 PHPSPSAGPIALTAANNAAAILKRPRTPPT 290
P P P A P A P+ PT
Sbjct: 776 PQPPPQAPPAPQQRPRGAPTPQPPPQAGPT 805
|
Length = 991 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1015 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.97 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.85 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.77 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.76 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.71 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.66 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.61 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.59 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.58 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.56 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.55 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.52 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.5 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.48 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.45 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.44 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.44 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.43 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.42 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.42 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.4 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.39 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.38 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.35 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.35 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.33 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.31 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.29 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.29 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.27 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.26 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.24 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.23 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.22 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.2 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.19 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.18 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.16 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.16 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.08 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.06 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.04 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.02 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.94 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.9 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.87 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.85 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.81 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.81 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.78 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.76 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.75 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.75 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.72 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.71 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.7 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.68 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.65 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.64 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.64 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.63 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.62 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.61 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.61 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.6 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.57 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.56 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.56 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.55 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.54 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.49 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.47 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.45 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.4 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.37 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.36 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.36 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.34 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.32 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.32 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.29 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.22 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.21 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.12 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.12 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.1 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.09 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 98.07 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.03 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.98 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.95 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.93 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.89 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.89 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.87 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.86 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.83 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.81 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.79 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 97.77 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.74 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.68 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.65 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.65 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.62 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.62 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.55 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.5 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.36 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.34 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.31 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.28 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.26 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.25 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.22 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.14 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.11 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.09 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.08 | |
| PRK10115 | 686 | protease 2; Provisional | 97.06 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.03 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.97 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.96 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.94 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.87 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.79 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.79 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.71 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.68 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.65 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.59 | |
| PRK10115 | 686 | protease 2; Provisional | 96.57 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.55 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.5 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.4 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.36 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.29 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.27 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.19 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.13 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.11 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.04 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.02 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.98 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.93 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.88 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.8 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.78 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.75 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.73 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.67 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.29 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.17 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.16 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.09 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.95 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.62 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.5 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.44 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.37 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.3 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.21 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 94.2 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.07 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 93.72 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.68 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.57 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.51 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.17 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.12 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 92.9 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.39 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 92.32 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.07 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.64 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.29 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.27 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.24 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.23 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.01 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.98 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.88 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 90.87 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.74 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 90.74 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.73 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.7 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 90.67 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.65 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.59 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 90.37 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.08 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.05 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.59 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.57 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 89.53 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.19 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 89.14 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 89.11 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.9 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 88.3 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 88.04 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.02 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.84 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.8 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.32 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 87.1 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.95 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.95 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 86.7 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 85.86 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 85.77 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.29 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 84.07 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.0 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.86 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 83.43 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 83.34 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.66 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 82.01 | |
| PF09862 | 113 | DUF2089: Protein of unknown function (DUF2089); In | 81.89 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 80.88 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 80.83 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 80.71 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 80.63 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 80.59 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.16 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 80.15 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=530.03 Aligned_cols=491 Identities=22% Similarity=0.335 Sum_probs=408.6
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc---HHHHHHHhhcccHHHHHHHhcCCccccCCcchhHHHHHHHHHHH
Q 001776 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1015)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1015)
+-|++||+.|+|+++||.+|+.+||.|||+.++ ++.|.++++.|+|++++..+..+ ..++......+.|++.||+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i-~~~de~~~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRI-SFEDERNRKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhc-cCcchhhhHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 89999999999999999999888 34445556679999999999
Q ss_pred HHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhcccccccccccccCCCChhHHHHHHHHHHhhcccCCCccccc
Q 001776 82 LEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKL 161 (1015)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~ 161 (1015)
||++..|....|+.+||+.+.++.. +.++|++|..-|..++.....+...-......|.+|+++|+++|||+++
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il----- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL----- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc-----
Confidence 9999999999999999999888774 9999999988776654443332222122466799999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 001776 162 QFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQP 241 (1015)
Q Consensus 162 ~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1015)
+|++||++||+||++||+++|.|||. .+..+||.||.|.+ .+ + |++.
T Consensus 170 ----lP~rRLehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~-----------~q----i-------------p~qt 216 (519)
T KOG0293|consen 170 ----LPKRRLEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR-----------LQ----I-------------PSQT 216 (519)
T ss_pred ----CChHHHHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc-----------cc----C-------------Cchh
Confidence 99999999999999999999999995 66689999999999 22 2 2111
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhccCCCCCCCCCCccccCCCChHhHhhcCCCCCCCcccccc
Q 001776 242 TPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNL 321 (1015)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 321 (1015)
. ++|. .|+||||
T Consensus 217 ~-------------------------------------qil~-----------------------------~htdEVW-- 228 (519)
T KOG0293|consen 217 W-------------------------------------QILQ-----------------------------DHTDEVW-- 228 (519)
T ss_pred h-------------------------------------hhHh-----------------------------hCCCcEE--
Confidence 1 3333 8888888
Q ss_pred ccceeeeeeCCCCCCCccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEe
Q 001776 322 SVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401 (1015)
Q Consensus 322 ~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (1015)
-+.||++|+ +||+++.|.+..||++.....+..
T Consensus 229 ---------------------------------------fl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl------- 261 (519)
T KOG0293|consen 229 ---------------------------------------FLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL------- 261 (519)
T ss_pred ---------------------------------------EEEEcCCCe-eEeeccCCceEEEEEEecCcceee-------
Confidence 789999999 789999999999999866544221
Q ss_pred ccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEE
Q 001776 402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481 (1015)
Q Consensus 402 ~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~ 481 (1015)
..++.+|..+|..+.||||.++|++|+.|..+.+||+.+|....... .+|...+.+++|.|||. .++
T Consensus 262 ---------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V 328 (519)
T KOG0293|consen 262 ---------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFV 328 (519)
T ss_pred ---------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeE
Confidence 12378999999999999999999999999999999999998765332 24668899999999999 799
Q ss_pred EEeCCCeEEEEEcCCCceEEEeeCC-CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEEC
Q 001776 482 TCGEDRVIKVWDAVTGTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS 560 (1015)
Q Consensus 482 s~s~dg~v~vwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 560 (1015)
+|+.|+++..||+ .|..+..+++- ...|.+++..+ ||+++++.+.|..|++++..+...+. ......+|++++.|
T Consensus 329 ~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS 404 (519)
T KOG0293|consen 329 TGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSIS 404 (519)
T ss_pred ecCCCCcEEEecC-CcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEc
Confidence 9999999999996 55556555553 35688888854 45899999999999999987654443 33345689999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCC-eEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001776 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS-VGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 561 ~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~-i~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 638 (1015)
.|++++++.-.+. .+++||++..+.++.+.||..+. +..-||.. +..++++|++|+.|+||+..+|+++..+.+
T Consensus 405 ~d~k~~LvnL~~q----ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 405 KDGKLALVNLQDQ----EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred CCCcEEEEEcccC----eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 9999998876543 59999999999999999997633 33345654 448999999999999999999999999997
Q ss_pred CCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEccC
Q 001776 639 DGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 639 ~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
| ...|+||+|+| +..++|++++||+|+||....
T Consensus 481 H--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 H--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred C--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 7 67899999999 568999999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-67 Score=494.43 Aligned_cols=486 Identities=20% Similarity=0.320 Sum_probs=402.7
Q ss_pred hHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc----HHHHHHHhhcccHHHHHHHhcCCccccCCcchhHHHHHHHHHH
Q 001776 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN----MRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1015)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~ 80 (1015)
+.||||||.|||+|+.|++++++||+|+++++| ++.|-+.|.+|+||.+++.++.| .+| .+-+..+|||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP-----~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLP-----DKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCc-----hhHHHHHHHHH
Confidence 468999999999999999999999999999998 89999999999999999999999 444 44779999999
Q ss_pred HHHHHhccCHHHHHHHHHHh--cccccccCHHHHHHHHHhhcccccccccccccCCC-ChhH-HHHHHHHHHhhcccCCC
Q 001776 81 YLEALDKRDRAKAVEILVKD--LKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD-TKSA-RGIMLAELKKLIEANPL 156 (1015)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~-~~~~-R~~l~~~l~~~~~~~~~ 156 (1015)
.|||+|.+|...|..+||+. +..|+..+|+||.+|..||..+.+++.+. |++ .++. |..+.+.|...+..
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~V--- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVHV--- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceEE---
Confidence 99999999999999999985 66677789999999999999999999988 655 4554 66666667666665
Q ss_pred cccccCCCCCchHHHHHHHHHHHHHHHhcCCCCCCCCCcc-ccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 001776 157 FRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRANPDIK-TLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSA 235 (1015)
Q Consensus 157 ~~~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1015)
+||+||+.||+|||+||+++.++| |+.. +||++.-..+
T Consensus 155 ---------VppSRLlaLlGQaLKWQqHQGLLP---PGt~iDLFRGkAA~K----------------------------- 193 (508)
T KOG0275|consen 155 ---------VPPSRLLALLGQALKWQQHQGLLP---PGTTIDLFRGKAAMK----------------------------- 193 (508)
T ss_pred ---------cChHHHHHHHHHHhhhHhhcCCCC---CCceeeeccchhhhh-----------------------------
Confidence 999999999999999999999876 2221 3333322221
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCCCCCCCCCccccCCCchhhhccCCCCCCCCCCccccCCCChHhHhhcCCCCCCC
Q 001776 236 HGPFQPTPAALPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGIS 315 (1015)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1015)
.-.-+.+|......|+|+++
T Consensus 194 --------------------~~~Ee~~Pt~l~r~IKFg~K---------------------------------------- 213 (508)
T KOG0275|consen 194 --------------------DQEEERYPTQLARSIKFGQK---------------------------------------- 213 (508)
T ss_pred --------------------hhHhhhchHHhhhheecccc----------------------------------------
Confidence 11112233333333444333
Q ss_pred ccccccccceeeeeeCCCCCCCccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEe
Q 001776 316 DEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1015)
Q Consensus 316 ~~v~~~~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~ 395 (1015)
+.+.|..|||||+ +|++|+.||.|.+||..+|+.....
T Consensus 214 -----------------------------------------Sh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDL 251 (508)
T KOG0275|consen 214 -----------------------------------------SHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDL 251 (508)
T ss_pred -----------------------------------------cchhheeeCCCCc-eEeeccccceeeeehhccchhhhhh
Confidence 3456899999999 7899999999999999999876543
Q ss_pred eeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEe-cccCceeEEEEecC
Q 001776 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYP 474 (1015)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~~ 474 (1015)
+++ ....+.-+..+|.|+.||.|...||+|+.||.|+||.+.+|.+++ .+. .|...|+|+.||.|
T Consensus 252 kYQ-----------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD 317 (508)
T KOG0275|consen 252 KYQ-----------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRD 317 (508)
T ss_pred hhh-----------hhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccC
Confidence 322 222355688999999999999999999999999999999999998 444 89999999999999
Q ss_pred CCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC--C
Q 001776 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--H 552 (1015)
Q Consensus 475 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~ 552 (1015)
+. .+++++.|.++++.-+++|+++..|+||...|+...|. ++|..+++++.||+|++|+..+.++..++...+ .
T Consensus 318 ~S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft--~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~ 393 (508)
T KOG0275|consen 318 NS--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT--DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY 393 (508)
T ss_pred cc--hhhcccccceEEEeccccchhHHHhcCccccccceEEc--CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence 99 69999999999999999999999999999999999885 455899999999999999999999887776544 3
Q ss_pred ceEEEEECCCC-CEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001776 553 SSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 553 ~i~~~~~s~~~-~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~--~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~ 629 (1015)
+|+++..-|.+ ..+++|.. .+++++.++. |..++.+.... ++...+.+.+|.|.++++.++|+.++.|.+.+
T Consensus 394 ~vnsv~~~PKnpeh~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 394 PVNSVILLPKNPEHFIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred cceeEEEcCCCCceEEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 78888877754 56776643 4568888874 77777776542 23456678999999999999999999999999
Q ss_pred CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001776 630 VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 670 (1015)
|++...+..| ...+..++-+|..+.+|+-+.||.+++|.
T Consensus 469 G~LE~tl~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 469 GKLERTLPVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred Cceeeeeecc--cccccccccCcccchhhhhcccchhhhcC
Confidence 9999999877 55788999999999999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-57 Score=472.79 Aligned_cols=578 Identities=14% Similarity=0.219 Sum_probs=471.2
Q ss_pred eeeCCCCCCCccccCCCC------Ccee-EEEec--cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeE
Q 001776 328 VAYTPQSLGQSSYSTDDL------PKTV-VMTLN--QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (1015)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~------~~~~-~~~~~--h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 398 (1015)
++|+++|+.+++...+.. +... +.... ....+++++.+||++ .|++++..+.+++|++.+++.++.
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk~irs---- 99 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGKLIRS---- 99 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccchHhHh----
Confidence 569999999888877643 2222 22222 567899999999998 788999999999999999987764
Q ss_pred EEeccCCCcccccccccc-CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCc
Q 001776 399 VWELGACSMPLQASLSSD-YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477 (1015)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~ 477 (1015)
.+. |+++|.-++|+|.|..|++|+.||.|+|||+..+.+.. .|.||.+.|.++.|.|+-.+
T Consensus 100 ---------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 100 ---------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred ---------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccch
Confidence 344 99999999999999999999999999999999988776 89999999999999999876
Q ss_pred eEEEEEeCCCeEEEEEcCCCc-eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEE
Q 001776 478 LSVVTCGEDRVIKVWDAVTGT-KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 478 ~~l~s~s~dg~v~vwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 556 (1015)
..|++|..|+++++||+.+.. ++..+..|.+.|+++.+.++ +..+++++.|..+.+||+...+....... ...+.+
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~ 238 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLES 238 (775)
T ss_pred hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccC--CceEEEeccCcEEEEeehhhhhhhheech-hhheee
Confidence 578999999999999999655 48888999999999999765 47899999999999999965544444332 335667
Q ss_pred EEECCC-----CCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001776 557 MAYSAD-----GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 557 ~~~s~~-----~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
+.+-++ +.++++++. ++.+++||.++++++..........+..+...+..+.++....|.++.++|.++.+
T Consensus 239 vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~ 314 (775)
T KOG0319|consen 239 VVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELT 314 (775)
T ss_pred EEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccE
Confidence 777666 668888875 44699999999988766555433346666666666778888889999999999999
Q ss_pred eeEEEecCCCCCCcceEEEc-CCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccc
Q 001776 632 LLASIDADGGLQASPCIRFN-KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANA 710 (1015)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1015)
....+-+. .+.|..++|- |+.++||++++.+.+++|+..+.. ...+.+|...+.++.
T Consensus 315 i~k~ivG~--ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~--c~ii~GH~e~vlSL~------------------ 372 (775)
T KOG0319|consen 315 IVKQIVGY--NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSY--CQIIPGHTEAVLSLD------------------ 372 (775)
T ss_pred EehhhcCC--chhheeeeecCCccceEEEEeCCCceEEEecCCCc--eEEEeCchhheeeee------------------
Confidence 88888754 6678888875 577999999999999999887762 237788877655432
Q ss_pred ccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCC-c
Q 001776 711 NVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSG-L 789 (1015)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg-~ 789 (1015)
.+.+|..+++++.|.++++|.++...... .......+|...|.+++++..+ .
T Consensus 373 ------------------------~~~~g~llat~sKD~svilWr~~~~~~~~---~~~a~~~gH~~svgava~~~~~as 425 (775)
T KOG0319|consen 373 ------------------------VWSSGDLLATGSKDKSVILWRLNNNCSKS---LCVAQANGHTNSVGAVAGSKLGAS 425 (775)
T ss_pred ------------------------ecccCcEEEEecCCceEEEEEecCCcchh---hhhhhhcccccccceeeecccCcc
Confidence 12345689999999999999994322211 1122335799999999998765 5
Q ss_pred EEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEE
Q 001776 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISL 868 (1015)
Q Consensus 790 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~i 868 (1015)
++++++.|+++++|+++..+..... ...........|...|.+++++|+.+++|+|+ |.+.+|
T Consensus 426 ffvsvS~D~tlK~W~l~~s~~~~~~----------------~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 426 FFVSVSQDCTLKLWDLPKSKETAFP----------------IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred EEEEecCCceEEEecCCCccccccc----------------ceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 7899999999999998762111110 00000011123999999999999999999999 999999
Q ss_pred EeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCC
Q 001776 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (1015)
Q Consensus 869 wd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 948 (1015)
|+++.++...++.||...|.++.|+| ..+.+|+++.|++|+||.+.+..|+++|.||+..|..+.|-.+|..|+|++.|
T Consensus 490 W~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~ad 568 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGAD 568 (775)
T ss_pred ecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCC
Confidence 99999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eCCeEEEEEcCCce
Q 001776 949 SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPKLE 1009 (1015)
Q Consensus 949 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~~g~ 1009 (1015)
|.+++|++++++ |....+.|. +.|++++-++.+.++++| .||.|.+|.-.|.+
T Consensus 569 GliKlWnikt~e-----C~~tlD~H~---DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 569 GLIKLWNIKTNE-----CEMTLDAHN---DRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred CcEEEEeccchh-----hhhhhhhcc---ceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 999999999988 456677776 789999999999999995 99999999865543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-55 Score=462.10 Aligned_cols=542 Identities=19% Similarity=0.264 Sum_probs=451.3
Q ss_pred EEeccCCCeEEEEEecCCeEEEEEcCCcceE-eEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCC
Q 001776 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERI-AVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 362 ~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 440 (1015)
++|+++|+ .|++... ..|.+-|+.+++.. .. .-.+....+++++.+||+.+|++++...
T Consensus 25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 89999999 5666544 34888899998763 21 1234567899999999999999999999
Q ss_pred eEEEEEccCCceeeeeeEEec-ccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccC
Q 001776 441 IVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE 519 (1015)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~ 519 (1015)
.+++|++.+|+.++ .+.. |.+||..++|+|.+. .+++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998877 5565 999999999999997 89999999999999999999999999999999999999999
Q ss_pred CccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCC
Q 001776 520 NIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598 (1015)
Q Consensus 520 ~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~ 598 (1015)
+...|++|..|+++++||+..... ......|.+.+++++|++|+..+++++.|+ .+.+||+.+.+..+++....
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk----vi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK----VIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc----EEEEeehhhhhhhheechhh-
Confidence 888899999999999999995544 677888999999999999999999998755 79999997777766665544
Q ss_pred CCeEEEEEeCC-----CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001776 599 RSVGVVQFDTT-----KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 599 ~~i~~v~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
.+-++.+-++ +.+++++|.+|.+++||..+++++....... ...+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 5666777776 6799999999999999999998887765443 22366666666556666778899999999988
Q ss_pred CceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceee
Q 001776 674 GIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRI 753 (1015)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~i 753 (1015)
. ++.+.+.|....+.... | .-++.+.++.+.+.+.+|+
T Consensus 313 l-~i~k~ivG~ndEI~Dm~------------------------------------~-----lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 313 L-TIVKQIVGYNDEILDMK------------------------------------F-----LGPEESHLAVATNSPELRL 350 (775)
T ss_pred c-EEehhhcCCchhheeee------------------------------------e-----cCCccceEEEEeCCCceEE
Confidence 8 78888888776655321 1 1134678899999999999
Q ss_pred eeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccc
Q 001776 754 WKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM 833 (1015)
Q Consensus 754 w~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 833 (1015)
+++.+ ..+..+ .+|...|.++....+|-+|++++.|.++++|.+... .+....
T Consensus 351 y~~~~----~~c~ii----~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------------------~~~~~~ 403 (775)
T KOG0319|consen 351 YTLPT----SYCQII----PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------------------CSKSLC 403 (775)
T ss_pred EecCC----CceEEE----eCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------------------cchhhh
Confidence 97764 333332 369999999998888899999999999999987321 111111
Q ss_pred cccCCCCCCCCCccEEEEccCC-CEEEEEc-CCeEEEEeCCCCc-----ee----EEeCCCCCCeeEEEEcCCCCcEEEE
Q 001776 834 TNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFK-----TM----TTFMPPPPAATFLAFHPQDNNIIAI 902 (1015)
Q Consensus 834 ~~~l~~~~~~~~v~~l~~s~dg-~~la~~s-dg~i~iwd~~~~~-----~~----~~l~~~~~~i~~l~~sp~d~~~la~ 902 (1015)
..... +|...|.+++++..+ .++++++ |.++++|++...+ .. .+...|...|++++++| +.+++|+
T Consensus 404 ~a~~~--gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT 480 (775)
T KOG0319|consen 404 VAQAN--GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIAT 480 (775)
T ss_pred hhhhc--ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEe
Confidence 11223 399999999998765 4788888 9999999997621 11 12346999999999999 8999999
Q ss_pred EEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceE
Q 001776 903 GMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982 (1015)
Q Consensus 903 g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1015)
|+.|++.+||+++.+....+|.||+..|++|.|+|..+.|+|+|.|++|+||.+++.. +++.+.||. .+|..
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~---~aVlr 552 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHT---SAVLR 552 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCcc---ceeEe
Confidence 9999999999999999999999999999999999999999999999999999999977 778899998 78999
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCceEeccCC
Q 001776 983 VQFHLDQTHLLA-VHETQIAIYEAPKLECLKQVG 1015 (1015)
Q Consensus 983 l~fs~dg~~l~~-~~d~~i~vwd~~~g~~l~~~~ 1015 (1015)
+.|-.+|+.|++ |.||-+++|++++++|+.+++
T Consensus 553 a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh
Confidence 999999999999 599999999999999998764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=410.21 Aligned_cols=535 Identities=15% Similarity=0.218 Sum_probs=426.6
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
+|...++-..|||.|. ++|+|...|+|+|||....+.+....++ .-.++|..++|+.|+++|
T Consensus 57 EH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds~RI 118 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDSKRI 118 (603)
T ss_pred cccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCCcEE
Confidence 3899999999999998 8899999999999999876655544433 355899999999999999
Q ss_pred EEEEC--CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 434 GVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 434 as~~~--dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
++.+. +...+++-.++|..+. ++.+|...|++++|-|.-.. .++||+.|++|.+|+=.--+...++..|...|+
T Consensus 119 ~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~ 194 (603)
T KOG0318|consen 119 AAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVN 194 (603)
T ss_pred EEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccccccee
Confidence 88765 3334444445565555 78999999999999998776 899999999999998666677778889999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec---CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
++.|+|+ |.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||+..+++++.|. .+++||..+.+
T Consensus 195 ~VRysPD--G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk----t~KIWdVs~~s 268 (603)
T KOG0318|consen 195 CVRYSPD--GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK----TIKIWDVSTNS 268 (603)
T ss_pred eEEECCC--CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc----eEEEEEeeccc
Confidence 9999765 5899999999999999999998888777 7888999999999999999998766 59999999999
Q ss_pred eeEEeeCCCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001776 589 VKRTYHGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1015)
Q Consensus 589 ~~~~~~~~~~--~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 666 (1015)
+++++..... .....+-|. ...|++.+.+|.|.+++......+..+.+| ...|+++..++++.+|++|+.||.|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GH--nK~ITaLtv~~d~~~i~SgsyDG~I 344 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGH--NKSITALTVSPDGKTIYSGSYDGHI 344 (603)
T ss_pred eEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccc--ccceeEEEEcCCCCEEEeeccCceE
Confidence 9998875543 122223343 668999999999999999999988888876 7799999999999999999999999
Q ss_pred EEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccc
Q 001776 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1015)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1015)
.-|+..++......-++|...+.... ..+...+++.+
T Consensus 345 ~~W~~~~g~~~~~~g~~h~nqI~~~~-------------------------------------------~~~~~~~~t~g 381 (603)
T KOG0318|consen 345 NSWDSGSGTSDRLAGKGHTNQIKGMA-------------------------------------------ASESGELFTIG 381 (603)
T ss_pred EEEecCCccccccccccccceEEEEe-------------------------------------------ecCCCcEEEEe
Confidence 99999988332222244544433210 01224688999
Q ss_pred cccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecC
Q 001776 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (1015)
Q Consensus 747 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d 826 (1015)
.|.++++.++.......... +. -.....+++..+++..++.++.++.+.+-+...
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~-~~-----lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~------------------- 436 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEV-VK-----LGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK------------------- 436 (603)
T ss_pred cCCeEEEEecccCcccccce-ee-----cCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------
Confidence 99999999886544333221 11 112233888999988788777776665532210
Q ss_pred CCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCcee--EEeCCCCCCeeEEEEcCCCCcEEEEE
Q 001776 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--TTFMPPPPAATFLAFHPQDNNIIAIG 903 (1015)
Q Consensus 827 ~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~--~~l~~~~~~i~~l~~sp~d~~~la~g 903 (1015)
+.. + .......+++++|+++.+|+|+ |++|+||.+...+.. ..+..|.++|++++||| |+.+||++
T Consensus 437 -----~~~--~---~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~ 505 (603)
T KOG0318|consen 437 -----VSS--I---PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAG 505 (603)
T ss_pred -----cee--e---ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEe
Confidence 111 1 1345678999999999999999 999999999875533 33556999999999999 99999999
Q ss_pred EcCCeEEEEEcccceEEEEEc-CccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceE
Q 001776 904 MEDSSIQIYNVRVDEVKTKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982 (1015)
Q Consensus 904 ~~dg~v~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1015)
+..+.|.+||+++.+...... -|++.|.+++|||+..++||||-|-.|.||+++.... .+.+...|. ..|+.
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~----~i~iknAH~---~gVn~ 578 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK----HIIIKNAHL---GGVNS 578 (603)
T ss_pred ccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh----heEeccccc---cCcee
Confidence 999999999999988754433 4999999999999999999999999999999987542 256666666 45999
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcC
Q 001776 983 VQFHLDQTHLLAVHETQIAIYEAP 1006 (1015)
Q Consensus 983 l~fs~dg~~l~~~~d~~i~vwd~~ 1006 (1015)
+.|-.+...+-+|.|-.|++|++.
T Consensus 579 v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 579 VAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEecCceEEeccCcceeEEeccc
Confidence 999988777766899999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=422.42 Aligned_cols=536 Identities=15% Similarity=0.240 Sum_probs=425.6
Q ss_pred eeeCCCCCCCccccCCCC-----Cce--eEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEE
Q 001776 328 VAYTPQSLGQSSYSTDDL-----PKT--VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW 400 (1015)
Q Consensus 328 ~~~s~~g~~~~~~~~~~~-----~~~--~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~ 400 (1015)
+.|++||..+.+-..+.+ .+. ....+.+...|++++.||+|. ++++....|...+-++.....++..++
T Consensus 20 l~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--- 95 (893)
T KOG0291|consen 20 LVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--- 95 (893)
T ss_pred EEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee---
Confidence 557777766555544432 222 333455899999999999999 666668889999999888877765443
Q ss_pred eccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCce-----eeeeeEEecccCceeEEEEecCC
Q 001776 401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE-----LRNHLEIEAHVGSVNDLAFSYPN 475 (1015)
Q Consensus 401 ~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~~~~h~~~V~~~~~s~~~ 475 (1015)
+.+|.|+.|||||+++|+|..+ .+.||....... +....++.+|...|+++.|+.|.
T Consensus 96 -----------------k~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS 157 (893)
T KOG0291|consen 96 -----------------KRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS 157 (893)
T ss_pred -----------------cCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCC
Confidence 3799999999999999988654 599998764322 22344677899999999999999
Q ss_pred CceEEEEEeCCCeEEEEEcCCCce--EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC------------
Q 001776 476 KQLSVVTCGEDRVIKVWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------------ 541 (1015)
Q Consensus 476 ~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~------------ 541 (1015)
+ +|++||.|.++++|+++..+. .+.+.+|...|.++-|..+. ..+++.+.||.+.+|..+..
T Consensus 158 r--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~--~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 158 R--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANS--LDLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred c--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCc--ceEEEEecCceEEEEEecCCCccccccccccc
Confidence 9 899999999999999987665 66788999999988775443 67999999999999977610
Q ss_pred -----------Cc-----------eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCC
Q 001776 542 -----------GS-----------RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599 (1015)
Q Consensus 542 -----------~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~ 599 (1015)
+. ...+......+++.+|++..+.|+++-.++ ...+|.+....+++.+.-...
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG----~f~LyelP~f~lih~LSis~~- 308 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG----EFGLYELPDFNLIHSLSISDQ- 308 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC----eeEEEecCCceEEEEeecccc-
Confidence 11 001112235788999999999999887654 478999999999999887765
Q ss_pred CeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceee
Q 001776 600 SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1015)
.|..++|+..|.+++.|+ .=|.+.||+..+...+...++| ...+++++++|||+++|+|++||.|+|||..++ -++
T Consensus 309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~ 385 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCF 385 (893)
T ss_pred eeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEE
Confidence 899999999999999988 4589999999987776666655 789999999999999999999999999999888 455
Q ss_pred eeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeecc
Q 001776 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (1015)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~ 758 (1015)
.++.
T Consensus 386 vTFt---------------------------------------------------------------------------- 389 (893)
T KOG0291|consen 386 VTFT---------------------------------------------------------------------------- 389 (893)
T ss_pred EEec----------------------------------------------------------------------------
Confidence 4443
Q ss_pred ccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCC
Q 001776 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1015)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~ 838 (1015)
.|...|+.+.|+..|+.+++++-||+|+.||+.+. .... +++
T Consensus 390 ---------------eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfR-Tft 431 (893)
T KOG0291|consen 390 ---------------EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFR-TFT 431 (893)
T ss_pred ---------------cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc----------------------ceee-eec
Confidence 27788999999999999999999999999987642 1000 011
Q ss_pred CCCCCCCccEEEEccCCCEEEEEc-CC-eEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEccc
Q 001776 839 DTNPEDAVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1015)
Q Consensus 839 ~~~~~~~v~~l~~s~dg~~la~~s-dg-~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~ 916 (1015)
. .......|++..|.|.++..|+ |. .|.+|++++|+.+..+.||.++|.+++|+| ++..||+|++|.+|++||+-+
T Consensus 432 ~-P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 432 S-PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred C-CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeec
Confidence 1 0344567899999999999998 64 599999999999999999999999999999 999999999999999999965
Q ss_pred c-eEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccce------------EEEecCCCccccCCceEE
Q 001776 917 D-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK------------FLTIPNGRTASALADTRV 983 (1015)
Q Consensus 917 ~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~------------~~~~~~~~~~~~~~v~~l 983 (1015)
. ..+.++. +...+..++|+|||+.|++++-||.|.+||.+.+...... .-.+...+.......+.+
T Consensus 510 s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti 588 (893)
T KOG0291|consen 510 SSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTI 588 (893)
T ss_pred cCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEE
Confidence 4 3455665 6677999999999999999999999999998765433110 011112222233678999
Q ss_pred EEccCCCEEEEE-eCCeEEEEEcCCceEeccC
Q 001776 984 QFHLDQTHLLAV-HETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 984 ~fs~dg~~l~~~-~d~~i~vwd~~~g~~l~~~ 1014 (1015)
++|+||++|++| ..+.|++|++.++-.+++|
T Consensus 589 ~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 589 CYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred EEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 999999999995 8889999999999988765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-49 Score=412.89 Aligned_cols=547 Identities=16% Similarity=0.253 Sum_probs=435.1
Q ss_pred cceeeeeeCCCCCCCccccCCC-------CCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEe
Q 001776 323 VNILPVAYTPQSLGQSSYSTDD-------LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1015)
Q Consensus 323 ~~i~~~~~s~~g~~~~~~~~~~-------~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~ 395 (1015)
-+|.+++.||+|..+.+....+ .....++.+..+.+|.|+.|||||+ ++|+| ..+.+.||.......-.-.
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~-~gn~lqiw~~P~~~~~~~~ 133 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVG-CGNLLQIWHAPGEIKNEFN 133 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEE-ecceeEEEecCcchhcccC
Confidence 4688999999999877665553 2456777788899999999999999 44554 3467999997654321111
Q ss_pred eeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCC
Q 001776 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (1015)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 475 (1015)
+| .....+.+|-..|+++.|+.|.++|++|+.|.++++|+++..+.+.. ..+.+|...|..+-|..+.
T Consensus 134 pF-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 134 PF-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANS 201 (893)
T ss_pred cc-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCc
Confidence 11 12334789999999999999999999999999999999988766433 3688999999999999988
Q ss_pred CceEEEEEeCCCeEEEEEcCC-----------------------Cce-----E------EEeeCCCCCEEEEeecccCCc
Q 001776 476 KQLSVVTCGEDRVIKVWDAVT-----------------------GTK-----Q------YIFEGHESPVYSICPHHKENI 521 (1015)
Q Consensus 476 ~~~~l~s~s~dg~v~vwd~~~-----------------------~~~-----~------~~~~~h~~~v~~i~~~~~~~~ 521 (1015)
. -+++-+.||.+.+|.... ++. . +-+......|++.+|++..
T Consensus 202 ~--~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-- 277 (893)
T KOG0291|consen 202 L--DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-- 277 (893)
T ss_pred c--eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--
Confidence 8 699999999999998650 111 1 1122233678999998765
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCe
Q 001776 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 601 (1015)
+.|+++-..|.+.+|.+.....+..+.....+|..++|+..|.+|+.++. .-+++.+|+.++...+.+..+|.. .+
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i 353 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RI 353 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-ce
Confidence 68999999999999999998888888888889999999999999999873 356799999999988888899987 89
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 602 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
.+++++|||+++++|++||.|+|||..++-++.++..| ...|+.+.|+..|+.+++.+-||+|+.||+... +..+++
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTf 430 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTF 430 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeee
Confidence 99999999999999999999999999999999999866 779999999999999999999999999999876 555555
Q ss_pred cCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccC
Q 001776 682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE 761 (1015)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~ 761 (1015)
..+.
T Consensus 431 t~P~---------------------------------------------------------------------------- 434 (893)
T KOG0291|consen 431 TSPE---------------------------------------------------------------------------- 434 (893)
T ss_pred cCCC----------------------------------------------------------------------------
Confidence 4321
Q ss_pred CcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCC
Q 001776 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTN 841 (1015)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~ 841 (1015)
.-...+++..|.|..+++|+.|. +.+.+|+.++|+++.. +.|
T Consensus 435 --------------p~QfscvavD~sGelV~AG~~d~---------------------F~IfvWS~qTGqllDi-LsG-- 476 (893)
T KOG0291|consen 435 --------------PIQFSCVAVDPSGELVCAGAQDS---------------------FEIFVWSVQTGQLLDI-LSG-- 476 (893)
T ss_pred --------------ceeeeEEEEcCCCCEEEeeccce---------------------EEEEEEEeecCeeeeh-hcC--
Confidence 22356889999999999888873 1234556777877653 666
Q ss_pred CCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCC-ceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceE
Q 001776 842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 919 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~ 919 (1015)
|+++|.+++|+|+|..||+++ |.+|++||+-.. ..+.++. +...+..++|+| +|+-||++.-||.|.+||++.+..
T Consensus 477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred CCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEEEecceEEEEEhhhcee
Confidence 999999999999999999999 999999998653 3444555 677899999999 999999999999999999987655
Q ss_pred EEEEcC--------------------ccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceE-------------
Q 001776 920 KTKLKG--------------------HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF------------- 966 (1015)
Q Consensus 920 ~~~l~~--------------------h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~------------- 966 (1015)
+..+.| .....+.+++|+||.++++|+....|++|++.++-..+.-.
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~ef 634 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEF 634 (893)
T ss_pred eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHH
Confidence 544332 23468899999999999999999999999988754331110
Q ss_pred -----------EEecC---------------C---------CccccCCceEEEEccCCCEEEEEeCCeEEEEEcCCceE
Q 001776 967 -----------LTIPN---------------G---------RTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLEC 1010 (1015)
Q Consensus 967 -----------~~~~~---------------~---------~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g~~ 1010 (1015)
+...+ | +....=.|.++.|||.|+-+|++.-.-+.||.+.+.-.
T Consensus 635 ln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~IYsld~~~~ 713 (893)
T KOG0291|consen 635 LNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLIYSLDTTIL 713 (893)
T ss_pred hccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEEEecCCceE
Confidence 00000 0 00001247899999999999998667788998866543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=412.07 Aligned_cols=505 Identities=14% Similarity=0.266 Sum_probs=389.7
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
.....|+|+.-+|+.. ++|+|..||.|+||+..++..+.. +.+|+.+|+++.|...|..|
T Consensus 63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rl 122 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRL 122 (888)
T ss_pred cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceE
Confidence 3456899999999987 889999999999999998866654 78999999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
|+|+.|+.|.+||+-...-+. .+.||...|+..-|..+.+ ++++.|.|+.|++||+++..|..+.-.|.+.|+++
T Consensus 123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l 197 (888)
T KOG0306|consen 123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL 197 (888)
T ss_pred eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence 999999999999997654333 6899999999999998677 89999999999999999999999999999999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCce------e------ee-cCCCCceEEEEECCCCCEEEEEeeCCC------
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSR------V------DY-DAPGHSSTMMAYSADGARLFSCGTNKE------ 574 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~------~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~------ 574 (1015)
++.+ +.+++++.|+.+++|++....-. . .+ ....+....++..++++++++-+.|.-
T Consensus 198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI 273 (888)
T KOG0306|consen 198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRI 273 (888)
T ss_pred EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheee
Confidence 9865 58999999999999998211000 0 00 000011112222333333333221110
Q ss_pred --------------------------------------------------------------------CCceEEEEeCCC
Q 001776 575 --------------------------------------------------------------------GESYLVEWNESE 586 (1015)
Q Consensus 575 --------------------------------------------------------------------~~~~i~iwd~~~ 586 (1015)
.++.+..|.+..
T Consensus 274 ~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~ 353 (888)
T KOG0306|consen 274 RSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLEN 353 (888)
T ss_pred cCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEecc
Confidence 012244444332
Q ss_pred -Cee--------eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEE
Q 001776 587 -GAV--------KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL 657 (1015)
Q Consensus 587 -~~~--------~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (1015)
+.. ...+.+|.. .|.+++++.+...+++|+ .+.+++|+..+.+++.++.. ..+.+..|-|.++++
T Consensus 354 s~~~~p~~~~~~~i~~~GHR~-dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~----~y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 354 SGKTSPEADRTSNIEIGGHRS-DVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC----GYILASKFVPGDRYI 427 (888)
T ss_pred CCCCCccccccceeeeccchh-heeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc----ccEEEEEecCCCceE
Confidence 111 123445554 778888887765555544 46788888888888888763 266778888888888
Q ss_pred EEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCc
Q 001776 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (1015)
Q Consensus 658 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1015)
++|...|.+.+||+.+. .++..++
T Consensus 428 v~G~k~Gel~vfdlaS~-~l~Eti~------------------------------------------------------- 451 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASA-SLVETIR------------------------------------------------------- 451 (888)
T ss_pred EEeccCCceEEEEeehh-hhhhhhh-------------------------------------------------------
Confidence 88888888888887665 2222221
Q ss_pred ccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCcee
Q 001776 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKAT 817 (1015)
Q Consensus 738 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 817 (1015)
.|.+.|.+++.+||++.+++++.|.+|++|+.....- ..|..
T Consensus 452 ------------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~- 493 (888)
T KOG0306|consen 452 ------------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQ- 493 (888)
T ss_pred ------------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCccc-
Confidence 3778889999999999999999999999998753211 00000
Q ss_pred cccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCC
Q 001776 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD 896 (1015)
Q Consensus 818 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d 896 (1015)
-++..+.. ...+. -...|.|+.+||||++||++- |.+|+||-+++.+....+-||.-||.||..|| |
T Consensus 494 ----~k~lsl~~----~rtLe---l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-D 561 (888)
T KOG0306|consen 494 ----KKVLSLKH----TRTLE---LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-D 561 (888)
T ss_pred ----ceeeeecc----ceEEe---ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-C
Confidence 00000000 11121 467899999999999999998 99999999999999999999999999999999 9
Q ss_pred CcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccc
Q 001776 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTAS 976 (1015)
Q Consensus 897 ~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~ 976 (1015)
++++++|+.|++|+||-++-|.|.+.+-+|.+.|.+|.|.|+..+++|+|.|+.|+-||-+.-+ .++.+.+|.
T Consensus 562 SklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-----~iq~L~~H~-- 634 (888)
T KOG0306|consen 562 SKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-----EIQKLDGHH-- 634 (888)
T ss_pred cCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-----hheeeccch--
Confidence 9999999999999999999999999999999999999999999999999999999999977654 567777777
Q ss_pred cCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001776 977 ALADTRVQFHLDQTHLLAV-HETQIAIYEAPK 1007 (1015)
Q Consensus 977 ~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~~ 1007 (1015)
..|.+++.+|+|.+++++ +|.+|++|....
T Consensus 635 -~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 -SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred -heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 679999999999999995 999999999754
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=394.24 Aligned_cols=367 Identities=20% Similarity=0.290 Sum_probs=298.7
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 68999999999999999999999999999999999977665 8899999999999999999 899999999999999
Q ss_pred cCCCceE-EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 494 AVTGTKQ-YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 494 ~~~~~~~-~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
.++|+++ ..+.+|...|++++|.|-. ..|.++++++++.|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~skD 226 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSKD 226 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccCC
Confidence 9998776 5899999999999986532 23445566766654
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+ .++|||+..+.++..+.+|.. +|+|++|..+| +|++|+.|++|++|+...|.+...+.+|+| .|+.++.+.
T Consensus 227 g----~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsT 298 (480)
T KOG0271|consen 227 G----SVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALST 298 (480)
T ss_pred C----CEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccc
Confidence 4 388888888888888899987 99999998665 899999999999999999999999998854 899998876
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCC
Q 001776 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1015)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1015)
+- .|-+|..|.+=+-....+ ..+.. +...+
T Consensus 299 dy-~LRtgaf~~t~~~~~~~s------e~~~~-------Al~rY------------------------------------ 328 (480)
T KOG0271|consen 299 DY-VLRTGAFDHTGRKPKSFS------EEQKK-------ALERY------------------------------------ 328 (480)
T ss_pred hh-hhhccccccccccCCChH------HHHHH-------HHHHH------------------------------------
Confidence 42 333444332211111100 00000 00000
Q ss_pred CCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCC
Q 001776 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNS 812 (1015)
Q Consensus 733 ~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~ 812 (1015)
+ .+.-..+..+++++.|+++.+|+-.
T Consensus 329 ----------------------~--------------------------~~~~~~~erlVSgsDd~tlflW~p~------ 354 (480)
T KOG0271|consen 329 ----------------------E--------------------------AVLKDSGERLVSGSDDFTLFLWNPF------ 354 (480)
T ss_pred ----------------------H--------------------------HhhccCcceeEEecCCceEEEeccc------
Confidence 0 0001123468888888888888532
Q ss_pred CCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEE
Q 001776 813 TGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA 891 (1015)
Q Consensus 813 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~ 891 (1015)
.+.+++.. ..| |..-|..+.||||++++|+++ |.+|++||..+|+.+.+|+||-..|..++
T Consensus 355 ---------------~~kkpi~r-mtg--Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 355 ---------------KSKKPITR-MTG--HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred ---------------ccccchhh-hhc--hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 11222221 334 999999999999999999999 99999999999999999999999999999
Q ss_pred EcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001776 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 892 ~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd 955 (1015)
|+. |.++|++|+.|.++++|++.+.++...|.||.++|.++.|+|||..+++|+.|..+++|.
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999 999999999999999999999999999999999999999999999999999999999995
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=377.42 Aligned_cols=531 Identities=15% Similarity=0.213 Sum_probs=415.9
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCC
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 440 (1015)
-+.-.|.|+.++.+. ...|.+-++++..... ++.+|...++-..|||.|.|+|+|...|
T Consensus 23 ~ig~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSG 81 (603)
T ss_pred EeccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcC
Confidence 344567777777764 3568888887765443 3789999999999999999999999999
Q ss_pred eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe--CCCeEEEEEcCCCceEEEeeCCCCCEEEEeeccc
Q 001776 441 IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518 (1015)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s--~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 518 (1015)
+|||||....+.+. ..+++.-.++|..++|+.|+++ |+..+ .++-.+++-.++|..+..+.||...|+++.|-|+
T Consensus 82 ~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 82 KVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred cEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 99999987744332 2367788899999999999995 44433 3333344333488899999999999999999887
Q ss_pred CCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEee---C
Q 001776 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH---G 595 (1015)
Q Consensus 519 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~---~ 595 (1015)
.. -.+++|++|++|.+|+=...+....+..|..-|+++.|+|||.++++++.|+ .+.+||-.+|+.+..+. +
T Consensus 159 RP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 159 RP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred Cc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCCCC
Confidence 76 5899999999999997655555566677788999999999999999998765 59999999999999998 6
Q ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC-CCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 596 LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 596 ~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
|.+ .|.+++|+||+..+++++.|.+++|||+.+.+++.++..... ......+.|. ...|++.+.+|+|.+++...+
T Consensus 234 HkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 665 899999999999999999999999999999999999875432 1222345565 668999999999999999998
Q ss_pred ceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeee
Q 001776 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (1015)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw 754 (1015)
...+.+.+|...+..+.. +++++.+++++.||.|.-|
T Consensus 311 -~~~~~i~GHnK~ITaLtv------------------------------------------~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 311 -SVLKVISGHNKSITALTV------------------------------------------SPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred -ChhheecccccceeEEEE------------------------------------------cCCCCEEEeeccCceEEEE
Confidence 489999999887664421 3567899999999999999
Q ss_pred eeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCcccc
Q 001776 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (1015)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 834 (1015)
+...+... .+....|...|.+++.+..+. +++.+.|.++++.++....+... ...
T Consensus 348 ~~~~g~~~------~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~-----------------~~~- 402 (603)
T KOG0318|consen 348 DSGSGTSD------RLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKS-----------------EVV- 402 (603)
T ss_pred ecCCcccc------ccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccc-----------------cee-
Confidence 98754332 233346999999999888776 77888888998876543211100 000
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEc
Q 001776 835 NDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (1015)
Q Consensus 835 ~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~ 914 (1015)
. -.....+++..+|+.+++.++++.|.+..-. ..+.+.. ..-...+++++| ++..+|+|+.|+.|+||.+
T Consensus 403 -~-----lg~QP~~lav~~d~~~avv~~~~~iv~l~~~--~~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl 472 (603)
T KOG0318|consen 403 -K-----LGSQPKGLAVLSDGGTAVVACISDIVLLQDQ--TKVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSL 472 (603)
T ss_pred -e-----cCCCceeEEEcCCCCEEEEEecCcEEEEecC--Ccceeec-cccccceEEEcC-CCCEEEEecccceEEEEEe
Confidence 0 2334458999999988888887666666522 2222222 344678999999 9999999999999999999
Q ss_pred ccceE--EEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEE
Q 001776 915 RVDEV--KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHL 992 (1015)
Q Consensus 915 ~~~~~--~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 992 (1015)
..++. ...+..|.++|+++++|||+.|||+|+..+.|.+||+.+.+.... ...- |.+.|.+++|||+.+++
T Consensus 473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w~F---HtakI~~~aWsP~n~~v 545 (603)
T KOG0318|consen 473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN----RWAF---HTAKINCVAWSPNNKLV 545 (603)
T ss_pred cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc----eeee---eeeeEEEEEeCCCceEE
Confidence 87653 334567999999999999999999999999999999999774211 1111 33779999999999999
Q ss_pred EEE-eCCeEEEEEcCCc
Q 001776 993 LAV-HETQIAIYEAPKL 1008 (1015)
Q Consensus 993 ~~~-~d~~i~vwd~~~g 1008 (1015)
|+| -|..|.||+++..
T Consensus 546 ATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 546 ATGSLDTNVIIYSVKKP 562 (603)
T ss_pred EeccccceEEEEEccCh
Confidence 996 8999999999753
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-50 Score=388.40 Aligned_cols=325 Identities=22% Similarity=0.347 Sum_probs=290.8
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
+|.++|.|++|+|+|. .||+|+.|.++++||+.+.....+ .++|...|.|++|||||+.|
T Consensus 113 GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred CCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEEECCCcchh
Confidence 3999999999999999 689999999999999999887765 78999999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEec-----CCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCC
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~ 508 (1015)
|+|+.||+|++||.++|+++.. .+.+|...|++++|.| ..+ ++++++.||+|+|||+..+.++..+.+|+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999987654 6899999999999976 455 799999999999999999999999999999
Q ss_pred CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEEC-----------CCCC-------------
Q 001776 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS-----------ADGA------------- 564 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~------------- 564 (1015)
+|+|++|-. + .++++++.|++|++|+...+.....+.+|.++|+.++++ |.++
T Consensus 249 ~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 999999843 3 499999999999999999888899999999999999877 2233
Q ss_pred ------------EEEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001776 565 ------------RLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 565 ------------~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
++++++.|. ++.+|+.... +++....+|.. .|..+.|+||++++++++-|..|++||.++|+
T Consensus 326 ~rY~~~~~~~~erlVSgsDd~----tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSDDF----TLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGK 400 (480)
T ss_pred HHHHHhhccCcceeEEecCCc----eEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcc
Confidence 488887644 6999997654 57888889987 89999999999999999999999999999999
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccc
Q 001776 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANAN 711 (1015)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1015)
.+.++.+| ...|+.++|+.|.++|++|+.|.++++|++.+. ++...+
T Consensus 401 ~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk-Kl~~DL------------------------------ 447 (480)
T KOG0271|consen 401 FLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK-KLKQDL------------------------------ 447 (480)
T ss_pred hhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeee-eecccC------------------------------
Confidence 99999977 779999999999999999999999999999876 222222
Q ss_pred cccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEE
Q 001776 712 VGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAI 791 (1015)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l 791 (1015)
.+|.+.|.++.|+|||..+
T Consensus 448 -------------------------------------------------------------pGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 448 -------------------------------------------------------------PGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred -------------------------------------------------------------CCCCceEEEEEecCCCcee
Confidence 1378889999999999999
Q ss_pred EEeccCcEEEEee
Q 001776 792 LALASNAVHKLWK 804 (1015)
Q Consensus 792 ~~~~~dg~i~vw~ 804 (1015)
++++.|..+++|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 9999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=386.66 Aligned_cols=492 Identities=15% Similarity=0.215 Sum_probs=398.2
Q ss_pred ceeeeeeCCCCCCCccccCCCC-------CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEe
Q 001776 324 NILPVAYTPQSLGQSSYSTDDL-------PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395 (1015)
Q Consensus 324 ~i~~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~ 395 (1015)
.+.|+.-+|+.-.+|..-.|+. ......+++ |..+|+++.|...|. .+++|+.|+.|.+||+-...-+..
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~-rlaSGskDt~IIvwDlV~E~Gl~r- 144 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGT-RLASGSKDTDIIVWDLVGEEGLFR- 144 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCc-eEeecCCCccEEEEEeccceeeEE-
Confidence 4557777788777787776654 235555665 999999999999999 689999999999999977665544
Q ss_pred eeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCC
Q 001776 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (1015)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 475 (1015)
+.||++.|+..-|..+.++|++.+.|+.|++||+++..++. +.-.|.+.|+.+++.+
T Consensus 145 ------------------L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~---Thvd~r~Eiw~l~~~~-- 201 (888)
T KOG0306|consen 145 ------------------LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFE---THVDHRGEIWALVLDE-- 201 (888)
T ss_pred ------------------eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeee---EEecccceEEEEEEec--
Confidence 78999999999999999999999999999999999987776 6778999999999997
Q ss_pred CceEEEEEeCCCeEEEEEcCC------------------------CceEEEee---------------------------
Q 001776 476 KQLSVVTCGEDRVIKVWDAVT------------------------GTKQYIFE--------------------------- 504 (1015)
Q Consensus 476 ~~~~l~s~s~dg~v~vwd~~~------------------------~~~~~~~~--------------------------- 504 (1015)
+ .+++++.|+.+++|++.. ++.+....
T Consensus 202 ~--~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~ 279 (888)
T KOG0306|consen 202 K--LLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEI 279 (888)
T ss_pred c--eEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHH
Confidence 4 689999999999999820 00110000
Q ss_pred --------------------------------------CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce--
Q 001776 505 --------------------------------------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-- 544 (1015)
Q Consensus 505 --------------------------------------~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-- 544 (1015)
.-...+.++.+.+++.....+..-.++++..|.++.....
T Consensus 280 ~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p 359 (888)
T KOG0306|consen 280 AKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSP 359 (888)
T ss_pred HHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCc
Confidence 0122355556666555442233366778888877652222
Q ss_pred -------eeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe
Q 001776 545 -------VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1015)
Q Consensus 545 -------~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~ 617 (1015)
..+.+|...|.+++++.+...+++++.+ .+.+|+..+.++++++... .+.+..|.|.++++++|.
T Consensus 360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~-----SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 360 EADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGE-----SIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGT 431 (888)
T ss_pred cccccceeeeccchhheeEEEeecCceeeeecCCC-----cEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEec
Confidence 4566777899999999999888887643 4999999999999998865 677889999999999999
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccccccee
Q 001776 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (1015)
Q Consensus 618 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1015)
..|.+.+||+.+...+.+++.| .+.++.++.+||+..+++|+.|.+|++||.. ......+....
T Consensus 432 k~Gel~vfdlaS~~l~Eti~AH--dgaIWsi~~~pD~~g~vT~saDktVkfWdf~----l~~~~~gt~~k---------- 495 (888)
T KOG0306|consen 432 KNGELQVFDLASASLVETIRAH--DGAIWSISLSPDNKGFVTGSADKTVKFWDFK----LVVSVPGTQKK---------- 495 (888)
T ss_pred cCCceEEEEeehhhhhhhhhcc--ccceeeeeecCCCCceEEecCCcEEEEEeEE----EEeccCcccce----------
Confidence 9999999999999999999866 6689999999999999999999999999974 22211110000
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCc
Q 001776 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (1015)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (1015)
+..+ ...+.+. -..
T Consensus 496 -------------------------------------------------------~lsl------~~~rtLe-----l~d 509 (888)
T KOG0306|consen 496 -------------------------------------------------------VLSL------KHTRTLE-----LED 509 (888)
T ss_pred -------------------------------------------------------eeee------ccceEEe-----ccc
Confidence 0000 0011111 346
Q ss_pred cEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 778 ~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
.|.++.+||||++|+++--|.+++||-+++-.+ + ..+- +|.-+|.|+..|||+++
T Consensus 510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--------------f---------lsLY--GHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--------------F---------LSLY--GHKLPVLSMDISPDSKL 564 (888)
T ss_pred cEEEEEEcCCCcEEEEEeccCeEEEEEecceee--------------e---------eeec--ccccceeEEeccCCcCe
Confidence 799999999999999999999999997664211 0 0133 49999999999999999
Q ss_pred EEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEe
Q 001776 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (1015)
Q Consensus 858 la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s 936 (1015)
+++|+ |..|++|-++=|.|.+.+-+|...|.++.|-| ....+.+++.|+.|+-||-+..++++++.+|...|++++.+
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 99999 99999999999999999999999999999999 88899999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccC
Q 001776 937 NTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 937 pdg~~l~s~s~dg~v~vWd~~~ 958 (1015)
|+|.+++++|.|.+|++|....
T Consensus 644 ~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999998655
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=338.95 Aligned_cols=284 Identities=18% Similarity=0.246 Sum_probs=266.0
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC--C
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--G 430 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g 430 (1015)
++.+.+|..+.||+|++ ++|||+.+|.++||+..+...+.+ +.+|.+.|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence 44678999999999999 889999999999999999877765 8999999999999996 6
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCE
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v 510 (1015)
..||+|+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||+.++..+...+||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999876666 7899999999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeee
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~ 590 (1015)
.+++|++++ .++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..+++|+.| ++++|||++....+
T Consensus 307 ~~iaf~~DG--SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D----nt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQPDG--SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD----NTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecCCC--ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC----CcEEEeeecccccc
Confidence 999997655 799999999999999999999999999999999999999999999999764 46999999999999
Q ss_pred EEeeCCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001776 591 RTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1015)
Q Consensus 591 ~~~~~~~~~~i~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 669 (1015)
.++.+|.+ -|+.|+|+| .|.+|++++.|+++++|...+..+++++.+| ...|.++.+++|++++++++.|.++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC--ccceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 7789999999999999999999999999977 6689999999999999999999999999
Q ss_pred E
Q 001776 670 A 670 (1015)
Q Consensus 670 ~ 670 (1015)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=327.64 Aligned_cols=318 Identities=18% Similarity=0.235 Sum_probs=275.1
Q ss_pred ccccccceeeeeeCCCCC-CCccccCCCCCce----------------------eEEEeccCCCeeEEEeccCCCeEEEE
Q 001776 318 VNNLSVNILPVAYTPQSL-GQSSYSTDDLPKT----------------------VVMTLNQGSAVKSMDFHPVQQILLVV 374 (1015)
Q Consensus 318 v~~~~~~i~~~~~s~~g~-~~~~~~~~~~~~~----------------------~~~~~~h~~~V~~~~~sp~g~~lla~ 374 (1015)
|.+|...|.+.+|+|-.+ .+++.+.+...+. .......+..|++++|+.+|. +||+
T Consensus 174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~Lat 252 (524)
T KOG0273|consen 174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LLAT 252 (524)
T ss_pred eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC-eEEE
Confidence 444556677999999888 6666665543110 112223457899999999999 8999
Q ss_pred EecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceee
Q 001776 375 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454 (1015)
Q Consensus 375 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~ 454 (1015)
|+.||.++||+...+... .+..|+++|.++.|+.+|+||++++.|+++.+||..+|....
T Consensus 253 G~~~G~~riw~~~G~l~~--------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 253 GSEDGEARIWNKDGNLIS--------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred eecCcEEEEEecCchhhh--------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 999999999998765432 278899999999999999999999999999999999987655
Q ss_pred eeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEE
Q 001776 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIK 534 (1015)
Q Consensus 455 ~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~ 534 (1015)
.+.-|..+-..+.|-.+.. +++++.|+.|+|+.+....++.++.+|.+.|.++.|++.+ .+|++++.|++++
T Consensus 313 ---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 313 ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLK 384 (524)
T ss_pred ---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeE
Confidence 5667888878899987775 8999999999999999999999999999999999997655 7999999999999
Q ss_pred EEeCCCCCceeeecCCCCceEEEEECCCCC---------EEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEE
Q 001776 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGA---------RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQ 605 (1015)
Q Consensus 535 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~---------~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~ 605 (1015)
+|+.........+..|...|..+.|+|.|. .+++++. ++++++||+..+.++.+|..|.. +|++++
T Consensus 385 iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~gv~i~~f~kH~~-pVysva 459 (524)
T KOG0273|consen 385 IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVESGVPIHTLMKHQE-PVYSVA 459 (524)
T ss_pred eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccCCceeEeeccCCC-ceEEEE
Confidence 999998888888999999999999999753 6777765 44799999999999999999988 999999
Q ss_pred EeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 606 FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 606 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
|+|+|+++++|+.||.|.+|+..+++.++.... ...|..++|+.+|..|..+..|+.+.+.|+.
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~---~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG---TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeEeecC---CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999999999975 3458999999999999999999999998864
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=335.41 Aligned_cols=581 Identities=14% Similarity=0.174 Sum_probs=406.5
Q ss_pred EEeccCCCeEEEEEecCCeEEEEEcCCcceEeEee-e----E----------------EEeccCCCccccccccccCCCC
Q 001776 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS-F----K----------------VWELGACSMPLQASLSSDYTAS 420 (1015)
Q Consensus 362 ~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~-~----~----------------~~~~~~~~~~~~~~~~~~h~~~ 420 (1015)
..+..-|..++++.+.+.+..+||...-..+...+ + . +.-..++. ....+..+|.+.
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk--~i~~~~~~~~a~ 116 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGK--HIRHTTLLHGAK 116 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccc--eEEEEeccccce
Confidence 44555555677888888888888876655443210 0 0 00000000 000112334444
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEEccCC-ceeeeeeEE-ecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 421 V~~l~~spdg~~las~~~dg~v~iwd~~~~-~~~~~~~~~-~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
|.-+. +=|.+++++..++.+.||+..++ +.......+ +...+.|+++. +|..--..++.|+.+|.+.+|++++++
T Consensus 117 v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K 193 (910)
T KOG1539|consen 117 VHLLL--PFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGK 193 (910)
T ss_pred EEEEe--eecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCc
Confidence 43332 34788899999999999999884 221111122 22223376654 454322268999999999999999999
Q ss_pred eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCce
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~ 578 (1015)
.+++++++...|+++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+++.+. ..+.
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~ 268 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGD 268 (910)
T ss_pred EEEEecccccceeEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCce
Confidence 999999999999999876665 58999999999999999999999998877789999999999998877653 2446
Q ss_pred EEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEecCCCCCCcceEEEc-CCCC
Q 001776 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDADGGLQASPCIRFN-KEGI 655 (1015)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~v~~s-~~~~ 655 (1015)
+.+||++..+........+.+.+....|.|....+++++.|+.+++|=.+++. +...-...+|..+..|+.|. .+|.
T Consensus 269 m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~ 348 (910)
T KOG1539|consen 269 MAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGH 348 (910)
T ss_pred EEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcE
Confidence 99999999988888775554588889999999999999999998888555443 22222223557888999998 5889
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCC
Q 001776 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (1015)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1015)
.+.+++.|++++.+++.....-...-+.|... .....+ ... ..+...|......+... +.
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~-------------~~kk~~-----~~~-~~~~k~p~i~~fa~~~~-RE 408 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQELGQLHNKK-------------RAKKVN-----VFS-TEKLKLPPIVEFAFENA-RE 408 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHhhccccccc-------------cccccc-----ccc-hhhhcCCcceeeecccc-hh
Confidence 99999999999998875431100000011000 000000 000 00011111111121111 11
Q ss_pred CcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCc
Q 001776 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGK 815 (1015)
Q Consensus 736 ~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 815 (1015)
....+.++..-.+...+.|+..........-. .-+.+.....+++++.++.|++.+.|.+.|.|.+|++..+
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~-~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG------- 480 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLD-PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG------- 480 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEec-CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-------
Confidence 22233445555667888999876443222111 1111224577899999999999999999999999987643
Q ss_pred eecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcC
Q 001776 816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 894 (1015)
Q Consensus 816 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp 894 (1015)
...........|..+|+.++...-++.+++++ +|-+.+||......+..+. -...+.++..+.
T Consensus 481 ---------------i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr 544 (910)
T KOG1539|consen 481 ---------------IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR 544 (910)
T ss_pred ---------------eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee
Confidence 21111111223899999999998899999988 9999999999988877776 456788888888
Q ss_pred CCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCc
Q 001776 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT 974 (1015)
Q Consensus 895 ~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 974 (1015)
....+|.+.+|-.|+++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+.++..+....+.
T Consensus 545 -~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd------ 617 (910)
T KOG1539|consen 545 -VSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD------ 617 (910)
T ss_pred -hhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC------
Confidence 7889999999999999999999999999999999999999999999999999999999999998865432221
Q ss_pred cccCCceEEEEccCCCEEEEE-eC-CeEEEEEcC
Q 001776 975 ASALADTRVQFHLDQTHLLAV-HE-TQIAIYEAP 1006 (1015)
Q Consensus 975 ~~~~~v~~l~fs~dg~~l~~~-~d-~~i~vwd~~ 1006 (1015)
.+.+++.|||+|.+||+. .| .-|++|--.
T Consensus 618 ---~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 618 ---SPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ---CcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 457899999999999996 44 679999643
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=331.72 Aligned_cols=286 Identities=19% Similarity=0.275 Sum_probs=261.6
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
.+.+.+|..+.||+|++.||||+.+|.++||+..+...+. +|.+|...|.++.|+|......++||+.||++++|++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 3567899999999999999999999999999999886555 8999999999999999842227999999999999999
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCC
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 574 (1015)
.+...+..+.+|...|..++|+|++ ++|++++.|.+-++||+++........+|...|.+++|.|||..+++|+.|.
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG--~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~- 325 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSG--KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS- 325 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCC--ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc-
Confidence 9999999999999999999998765 8999999999999999999999999999999999999999999999998754
Q ss_pred CCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-C
Q 001776 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-E 653 (1015)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 653 (1015)
.-++||+++|+++..+.+|.. .|..++|+|+|-.+++||.|++++|||++....+..+..| ..-|+.|.|+| .
T Consensus 326 ---~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 326 ---LGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQE 399 (459)
T ss_pred ---hhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc--cchhhheEecccC
Confidence 588999999999999999887 9999999999999999999999999999999998888866 77899999999 7
Q ss_pred CCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCC
Q 001776 654 GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDS 733 (1015)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1015)
|.+|++++.|++++||...+. .+++.+.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~-~~~ksLa--------------------------------------------------- 427 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTW-SPLKSLA--------------------------------------------------- 427 (459)
T ss_pred CeEEEEcccCcceeeecCCCc-ccchhhc---------------------------------------------------
Confidence 899999999999999998777 4554443
Q ss_pred CCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEee
Q 001776 734 RNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1015)
Q Consensus 734 ~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~ 804 (1015)
+|.+.|.++.+++|+.++++++.|.++++|.
T Consensus 428 ----------------------------------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 ----------------------------------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----------------------------------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 3778889999999999999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=331.67 Aligned_cols=501 Identities=14% Similarity=0.185 Sum_probs=361.6
Q ss_pred cCCCeeEEEeccCCCeEEEEEe--cCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (1015)
+..+++|++||++|+ ++|+|- ....++||++.....+.. +..|+-.|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 777999999999999 778875 456799999988766554 7789999999999999999
Q ss_pred EEEEEC--CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE---------
Q 001776 433 FGVAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 501 (1015)
Q Consensus 433 las~~~--dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------- 501 (1015)
+++.+. |-.|.+||.+...... -..-...|..++|+.||. |++|.+. ..|++|.++.++...
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeeee-eeEEEEEeeccccccCCccccchh
Confidence 998776 4467888876543222 123456799999999999 7888764 689999987654110
Q ss_pred ----Ee------------------------eCC-----------------CCCEEEEeecccCCccEEEEEeCCCeEEEE
Q 001776 502 ----IF------------------------EGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAW 536 (1015)
Q Consensus 502 ----~~------------------------~~h-----------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vw 536 (1015)
.+ .|| +..-.||+.+ . ++|++|+.+|.|+++
T Consensus 210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~--r~I~cgCa~g~vrlF 285 (1080)
T KOG1408|consen 210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S--RLIACGCAKGMVRLF 285 (1080)
T ss_pred hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c--ceEEEeeccceeeec
Confidence 00 011 1112234432 2 689999999999999
Q ss_pred eCCCCCceeeecC------------------------CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeE-
Q 001776 537 LYDNLGSRVDYDA------------------------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR- 591 (1015)
Q Consensus 537 d~~~~~~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~- 591 (1015)
+..+..-..++.. .-....++.|++....+.+...|. .+++||+++-..+.
T Consensus 286 np~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndh----SlYvWDvrD~~kvgk 361 (1080)
T KOG1408|consen 286 NPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDH----SLYVWDVRDVNKVGK 361 (1080)
T ss_pred CcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCc----eEEEEeccccccccc
Confidence 8765332221110 001234677898888888887544 59999998754332
Q ss_pred --EeeCCCCCCeEEEEEeCC-----------CCEEEEEeCCCcEEEEeCCCCceeEEEe-------------c-------
Q 001776 592 --TYHGLGKRSVGVVQFDTT-----------KNRFLAAGDEFMIKFWDMDNVNLLASID-------------A------- 638 (1015)
Q Consensus 592 --~~~~~~~~~i~~v~~~~~-----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~------- 638 (1015)
.+--|.. .|..+..-|. ...+++++.|++|++||+..+..-..+. .
T Consensus 362 ~~s~lyHS~-ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~ 440 (1080)
T KOG1408|consen 362 CSSMLYHSA-CIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIM 440 (1080)
T ss_pred eeeeeeccc-eeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhh
Confidence 2222322 3444332220 1358999999999999987532111100 0
Q ss_pred ---------------CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccc
Q 001776 639 ---------------DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703 (1015)
Q Consensus 639 ---------------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1015)
-+....+.+++.+|+|++||+|...|.++||++..- +....++.|..++..+....
T Consensus 441 ~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l-~~~~~~eAHesEilcLeyS~-------- 511 (1080)
T KOG1408|consen 441 HDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL-EYTCFMEAHESEILCLEYSF-------- 511 (1080)
T ss_pred hhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh-hhhhheecccceeEEEeecC--------
Confidence 012345789999999999999999999999999877 66777788877765431110
Q ss_pred cccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEE
Q 001776 704 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 783 (1015)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 783 (1015)
| -...+++++++.|+-|.++|....- .+.-...+|...|+++.
T Consensus 512 ------------------p-------------~~~~kLLASasrdRlIHV~Dv~rny------~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 512 ------------------P-------------VLTNKLLASASRDRLIHVYDVKRNY------DLVQTLDGHSSSITSVK 554 (1080)
T ss_pred ------------------c-------------hhhhHhhhhccCCceEEEEeccccc------chhhhhcccccceeEEE
Confidence 0 0124688999999999999986321 11111246899999999
Q ss_pred EcCCC--cEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEE
Q 001776 784 YTNSG--LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA 861 (1015)
Q Consensus 784 ~s~dg--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~ 861 (1015)
|..+| ..+++++.|..+.+- .... .....++-..+.. + ....+..+++.|..++++++
T Consensus 555 Fa~~gln~~MiscGADksimFr-~~qk----------~~~g~~f~r~t~t-----~----~ktTlYDm~Vdp~~k~v~t~ 614 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFR-VNQK----------ASSGRLFPRHTQT-----L----SKTTLYDMAVDPTSKLVVTV 614 (1080)
T ss_pred EeecCCceEEEeccCchhhhee-hhcc----------ccCceeccccccc-----c----ccceEEEeeeCCCcceEEEE
Confidence 99988 789999999776542 1110 0001111111100 1 35678899999999999999
Q ss_pred c-CCeEEEEeCCCCceeEEeCC---CCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeC
Q 001776 862 S-GGKISLFNMMTFKTMTTFMP---PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1015)
Q Consensus 862 s-dg~i~iwd~~~~~~~~~l~~---~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~sp 937 (1015)
+ |..|+|||+++++.++.|++ |.+....+...| .|.|||+.+.|+++.++|.-+|+++.+..||...|+.+.|++
T Consensus 615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n 693 (1080)
T KOG1408|consen 615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN 693 (1080)
T ss_pred ecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc
Confidence 9 99999999999999999986 556788889999 999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccC
Q 001776 938 TLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 938 dg~~l~s~s~dg~v~vWd~~~ 958 (1015)
|.+.|++.+.||.|.||.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=321.30 Aligned_cols=474 Identities=15% Similarity=0.259 Sum_probs=356.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
++..|.++.|+|..+ .+.++-..|.|.|||.++...+.. +.-..-+|++..|-+-.++++
T Consensus 12 rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 788999999999999 567778899999999999888765 333557899999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-ceEEEeeCCCCCEEEE
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSI 513 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i 513 (1015)
+|+.|..|+||+..+++.+. .+..|.+-|.+++.+|... +++|+|.|-+|++||.+.+ .+.++|.||...|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 8999999999999999999 8999999999999999865 7788999999999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCC--CEEEEEeeCCCCCceEEEEeCCCCeeeE
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG--ARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d~~~~~~i~iwd~~~~~~~~ 591 (1015)
+|+|..+ +.+++++.|++|++|.+....+..++.+|...|+++.+-+-| .+|++++. +..+++||.++..+++
T Consensus 147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 9999765 799999999999999999999999999999999999997755 58998875 4479999999999999
Q ss_pred EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 592 ~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
++.+|.. .|..++|+|.-..+++|++||+++||+..+.++..++... ...++|++-.+.+..++.|.+.|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 8999999999999999999999999999998888888754 568999999998888999988887765 22
Q ss_pred cCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccce
Q 001776 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1015)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 751 (1015)
-.+ .+.. +-+..| -
T Consensus 298 gre-eP~v----------------------------------------------------------------sMd~~g-K 311 (794)
T KOG0276|consen 298 GRE-EPAV----------------------------------------------------------------SMDSNG-K 311 (794)
T ss_pred cCC-CCce----------------------------------------------------------------eecCCc-c
Confidence 111 0000 000001 1
Q ss_pred eeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCc
Q 001776 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 831 (1015)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 831 (1015)
.+|... +.|..+- +-+.+.++ +...|+
T Consensus 312 Iiwa~~-------------------~ei~~~~-------~ks~~~~~---------------------------ev~DgE 338 (794)
T KOG0276|consen 312 IIWAVH-------------------SEIQAVN-------LKSVGAQK---------------------------EVTDGE 338 (794)
T ss_pred EEEEcC-------------------ceeeeee-------ceeccCcc---------------------------cccCCc
Confidence 122211 1111110 00001000 112222
Q ss_pred cccccCCCCC-CCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEE
Q 001776 832 LMTNDISDTN-PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQ 910 (1015)
Q Consensus 832 ~~~~~l~~~~-~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~ 910 (1015)
.+....+..+ ..--...++.||+|+++++++||.-.||..-..+ ..+-+.-....|++ |....|+-..++.|+
T Consensus 339 rL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vk 412 (794)
T KOG0276|consen 339 RLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVK 412 (794)
T ss_pred cccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceE
Confidence 1111111000 1122345788999999999999999998632211 12345567788999 777777777788899
Q ss_pred EEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCC
Q 001776 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQT 990 (1015)
Q Consensus 911 vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1015)
++ ++.+....+...-. ...--.|.+|...+. +.+++||.++++.. +..+-. ...+.|+.+|.
T Consensus 413 i~--knfke~ksi~~~~~----~e~i~gg~Llg~~ss-~~~~fydW~~~~lV-----rrI~v~------~k~v~w~d~g~ 474 (794)
T KOG0276|consen 413 IF--KNFKEHKSIRPDMS----AEGIFGGPLLGVRSS-DFLCFYDWESGELV-----RRIEVT------SKHVYWSDNGE 474 (794)
T ss_pred EE--ecceeccccccccc----eeeecCCceEEEEeC-CeEEEEEcccceEE-----EEEeec------cceeEEecCCC
Confidence 88 66666666542211 111224555655554 55999999998744 222222 23699999999
Q ss_pred EEEEEeCCeEEEEEc
Q 001776 991 HLLAVHETQIAIYEA 1005 (1015)
Q Consensus 991 ~l~~~~d~~i~vwd~ 1005 (1015)
+++.+.|...+++.+
T Consensus 475 lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 475 LVAIAGDDSFYILKF 489 (794)
T ss_pred EEEEEecCceeEEEe
Confidence 999987877666655
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=327.92 Aligned_cols=565 Identities=15% Similarity=0.161 Sum_probs=376.7
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE--C
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY--S 438 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--~ 438 (1015)
.++..|... ++|- -....|.+||....++-+ ++..|..+++|++||++|+|+|+|- .
T Consensus 42 gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG~ 100 (1080)
T KOG1408|consen 42 GLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECGR 100 (1080)
T ss_pred ccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccCC
Confidence 455556544 2221 123468889987765433 2567888999999999999999984 5
Q ss_pred CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC--CCeEEEEEcCCCceEEEeeCCCCCEEEEeec
Q 001776 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1015)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 516 (1015)
.-.++||++.....+. +|..|+..|+|++|+|.++ ++++.+. |-.|.+||++.......-+ -...|.+++|+
T Consensus 101 ~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~fs 174 (1080)
T KOG1408|consen 101 TPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAFS 174 (1080)
T ss_pred Cccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEEc
Confidence 6679999999877665 7889999999999999999 7887664 5677889887544333222 34568888885
Q ss_pred ccCCccEEEEEeCCCeEEEEeCCCCCceee---ecCCCC--------ceEEEEE----CCCCCEEEEEeeCCCCCceEEE
Q 001776 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH--------SSTMMAY----SADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 517 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~--------~i~~~~~----s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
++|.++++.+ +..|++|.++....... +.+... ....++. ..+..+.++. .+.+.-
T Consensus 175 --EdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 --EDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred --cCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5567888776 48899999886552111 111100 0001110 0011111111 111222
Q ss_pred EeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC----------------------
Q 001776 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD---------------------- 639 (1015)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------- 639 (1015)
|. +.+++.++-.-......+++++ .++|++|+.+|.|++|+..+-....++...
T Consensus 246 FS--sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 FS--SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred ec--hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 22 1222211111111134556665 579999999999999998765544443211
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee--eecCCccccccccccceecccccccccccccccccccc
Q 001776 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR--TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLG 717 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1015)
+......++.|++....|.+...|..++|||+++-.+.-+ .+-.|...++.+.... +
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p---------------------~ 380 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP---------------------C 380 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc---------------------c
Confidence 0011234678999899999999999999999987643322 2334444444332111 0
Q ss_pred cccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEecc---------------------------
Q 001776 718 ERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL--------------------------- 770 (1015)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~--------------------------- 770 (1015)
+.. .+.....| ..-+++++.|++||+|++.........+.-.+
T Consensus 381 nv~---------~~~~aclp-~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk 450 (1080)
T KOG1408|consen 381 NVH---------SPTAACLP-RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK 450 (1080)
T ss_pred ccc---------CcccccCC-ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence 000 01111112 22478999999999999987433222111000
Q ss_pred ---CCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCC----------------C---CCCceecc----cCcee
Q 001776 771 ---PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNER----------------N---STGKATTN----QAPQL 824 (1015)
Q Consensus 771 ---~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~----------------~---~~~~~~~~----~~~~~ 824 (1015)
..-.....++++++||+|+.|++|...|.++||++..-.+ + ...+++++ ..+++
T Consensus 451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV 530 (1080)
T KOG1408|consen 451 ALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHV 530 (1080)
T ss_pred cchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEE
Confidence 0022356799999999999999999999999999875411 1 11122222 24889
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEccCC--CEEEEEc-CCeEEEEeCCCCceeEEeCC-----CCCCeeEEEEcCCC
Q 001776 825 WQPPSGILMTNDISDTNPEDAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTMTTFMP-----PPPAATFLAFHPQD 896 (1015)
Q Consensus 825 ~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg--~~la~~s-dg~i~iwd~~~~~~~~~l~~-----~~~~i~~l~~sp~d 896 (1015)
+|......+...+.+ |...|+++.|.-.| ..+++++ |..|.+--.+.......+.. ....+..++..| .
T Consensus 531 ~Dv~rny~l~qtld~--HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~ 607 (1080)
T KOG1408|consen 531 YDVKRNYDLVQTLDG--HSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-T 607 (1080)
T ss_pred Eecccccchhhhhcc--cccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-C
Confidence 999888877777887 99999999999877 5566666 66654433221111122221 134688999999 9
Q ss_pred CcEEEEEEcCCeEEEEEcccceEEEEEcC---ccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCC
Q 001776 897 NNIIAIGMEDSSIQIYNVRVDEVKTKLKG---HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR 973 (1015)
Q Consensus 897 ~~~la~g~~dg~v~vwd~~~~~~~~~l~~---h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~ 973 (1015)
.+++++++.|+.|+|||+++|+..+.|+| |.+....+...|.|.|+|+...|.++.++|..+|++. ....||
T Consensus 608 ~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv-----A~m~GH 682 (1080)
T KOG1408|consen 608 SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV-----AQMTGH 682 (1080)
T ss_pred cceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh-----hhhcCc
Confidence 99999999999999999999999999976 6677888999999999999999999999999999944 445566
Q ss_pred ccccCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001776 974 TASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1015)
Q Consensus 974 ~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~~ 1007 (1015)
. ..|+.+.|++|-++|++ ++||.|.||.+..
T Consensus 683 s---E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 683 S---EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred c---hheeeeeecccchhheeecCCceEEEEECch
Confidence 5 78999999999999999 5999999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=297.21 Aligned_cols=291 Identities=17% Similarity=0.282 Sum_probs=262.6
Q ss_pred EEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc
Q 001776 350 VMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1015)
.++|+ |...|.++.|++|.+ .+++++.||.+.|||..+....+. +.-....|..++|+|
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sP 107 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSP 107 (343)
T ss_pred EEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECC
Confidence 36677 999999999999999 679999999999999988776654 334568999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCc---eeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeC
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGD---ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~---~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 505 (1015)
.|+++|+|+-|+...||++.+.+ ..+...++.+|.+-+.|+.|.+|+. |+|+|.|.++.+||+++|+.+..|.+
T Consensus 108 Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 108 SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecC
Confidence 99999999999999999998541 2344457899999999999998775 99999999999999999999999999
Q ss_pred CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
|.+.|.++.+.|. +++.+++|+.|+..++||++.+.....+.+|...|++++|.|+|.-+++++.|+ +.++||++
T Consensus 185 H~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~----tcRlyDlR 259 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDA----TCRLYDLR 259 (343)
T ss_pred CcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCc----eeEEEeec
Confidence 9999999999874 568999999999999999999999999999999999999999999999998654 69999999
Q ss_pred CCeeeEEeeCCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001776 586 EGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 586 ~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
....+..|.... ..+|++++|+..|++|++|..|.++.+||.-.++.+..+.+| ...|+|+..+|||..+++|+.|.
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH--eNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH--ENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc--CCeeEEEEECCCCcEEEecchhH
Confidence 998888887542 247899999999999999999999999999999999999977 66999999999999999999999
Q ss_pred cEEEEE
Q 001776 665 GIKILA 670 (1015)
Q Consensus 665 ~i~iw~ 670 (1015)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=294.87 Aligned_cols=287 Identities=17% Similarity=0.225 Sum_probs=260.3
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
+++||.+.|.++.|++|+++|++++.||.+.|||..+..... .++-....|..++|+|.|+ +++.|+.|+...||
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY 124 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence 388999999999999999999999999999999998876554 5666888999999999999 89999999999999
Q ss_pred EcCCC------ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECC-CCCE
Q 001776 493 DAVTG------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 565 (1015)
Q Consensus 493 d~~~~------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 565 (1015)
++.+. +..+++.+|++.+.++.|..+ ..|++++.|.+..+||++++.....+.+|...|.+++++| +++.
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD---~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt 201 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD---NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT 201 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC---CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence 99854 345679999999999999653 5899999999999999999999999999999999999999 9999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
+++++-|+ ..++||++.+..++.|.+|.. .|++++|.|+|.-|++|++|++.++||++..+.+..+........|
T Consensus 202 FvSg~cD~----~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 202 FVSGGCDK----SAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGI 276 (343)
T ss_pred EEeccccc----ceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCc
Confidence 99998765 599999999999999999998 9999999999999999999999999999999999999877777889
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccc
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1015)
++++||..|++|++|..|.++.+||.-.+ +....+.
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L~------------------------------------------- 312 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVLA------------------------------------------- 312 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeecccc-ceEEEee-------------------------------------------
Confidence 99999999999999999999999998766 2221111
Q ss_pred cccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEee
Q 001776 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWK 804 (1015)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~ 804 (1015)
+|.++|.++..+|||..+++|+.|.+++||.
T Consensus 313 ------------------------------------------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 ------------------------------------------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------------------------------------------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3889999999999999999999999999993
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=292.05 Aligned_cols=297 Identities=21% Similarity=0.299 Sum_probs=252.9
Q ss_pred eEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 349 ~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
+.-+++ |++.|+.++..+.+..++++++.|.++.+|++.......-. ....+.||+..|..++.+
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEc
Confidence 334565 99999999999998889999999999999999765322211 111278999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC-
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH- 506 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h- 506 (1015)
+||++.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|++ .+++|+.|++|++|++. |.+..++..+
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~ 146 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS 146 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence 999999999999999999999997665 7899999999999999999 69999999999999964 5555555443
Q ss_pred -CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC
Q 001776 507 -ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 507 -~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
.+.|.+++|+|.....+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++++.|+ .+.+||++
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg----~~~LwdL~ 222 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG----EAMLWDLN 222 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc----eEEEEEcc
Confidence 7899999999998778999999999999999999999999999999999999999999999987654 69999999
Q ss_pred CCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC-------CCCcceEEEcCCCCEEE
Q 001776 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-------LQASPCIRFNKEGILLA 658 (1015)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~ 658 (1015)
.++.+..+.... .|.+++|+|+.-.|+.+ .+..|+|||+.++..+..+..... .....+++|++||..|+
T Consensus 223 ~~k~lysl~a~~--~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf 299 (315)
T KOG0279|consen 223 EGKNLYSLEAFD--IVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLF 299 (315)
T ss_pred CCceeEeccCCC--eEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEE
Confidence 999987776544 79999999986555544 455699999999998877754321 23456889999999999
Q ss_pred EEeCCCcEEEEEcc
Q 001776 659 VSTNDNGIKILANA 672 (1015)
Q Consensus 659 ~~~~dg~i~iw~~~ 672 (1015)
+|..|+.|++|.+.
T Consensus 300 ~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 300 AGYTDNVIRVWQVA 313 (315)
T ss_pred eeecCCcEEEEEee
Confidence 99999999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=332.37 Aligned_cols=276 Identities=18% Similarity=0.299 Sum_probs=239.9
Q ss_pred CCCCCceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEe---eeE-----E----EeccCCCcc
Q 001776 342 TDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK---SFK-----V----WELGACSMP 408 (1015)
Q Consensus 342 ~~~~~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~---~~~-----~----~~~~~~~~~ 408 (1015)
.+.++..++.++. -...++|+.||+|+. ++|.|-.|..|++|.+...+....+ .+. . -++......
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 5566777888877 567899999999999 8999999999999999864321110 000 0 111222222
Q ss_pred ccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
.....+.||+++|..++|+|+.++|++++.|++||+|.+.+..++. .+.||..+|+++.|+|-|- ++||+|.|++
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t 516 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT 516 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence 3333588999999999999999999999999999999999987666 7889999999999999998 8999999999
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 568 (1015)
.++|......+++.+.+|-+.|.|+.|+|+. .++++||.|.++++||+.++..+..+.+|..+|.+++|||+|++|++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 9999999999999999999999999998766 79999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001776 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1015)
Q Consensus 569 ~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~ 630 (1015)
++.++ .|.+||+.+++++..+.+|.+ .+.++.|+.+|..|++||.|.+|++||+..-
T Consensus 595 g~ed~----~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 595 GDEDG----LIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cccCC----cEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 97654 699999999999999999955 9999999999999999999999999998643
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=313.56 Aligned_cols=542 Identities=16% Similarity=0.208 Sum_probs=370.5
Q ss_pred eeEEEec-cCCCeeEEEeccCCC--eEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEE
Q 001776 348 TVVMTLN-QGSAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1015)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~--~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1015)
..+.++. |..+|+|+.|-|+.+ -.+++|+.||.|.+|.++....+.... +.+|...+ +
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~-----------------~~g~~~~~--~ 105 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT-----------------IQGHCKEC--V 105 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe-----------------ecCcceeE--E
Confidence 4455555 999999999998775 247999999999999998544443222 34555544 4
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEec--ccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC--ceE
Q 001776 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG--TKQ 500 (1015)
Q Consensus 425 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~--h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~--~~~ 500 (1015)
+++.......+...|+.+.+||.+..+ +.....+.- ...--.|+++.++.+..+++.|+.+..|.++.-..+ +.+
T Consensus 106 cv~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v 184 (764)
T KOG1063|consen 106 CVVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV 184 (764)
T ss_pred EEEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence 444433444444789999999996544 111112221 122235677777655557778888888888875544 456
Q ss_pred EEeeCCCCCEEEEeecccCC-ccEEEEEeCCCeEEEEeCCCCC------------------------ce-------eeec
Q 001776 501 YIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLG------------------------SR-------VDYD 548 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~------------------------~~-------~~~~ 548 (1015)
..+.||...|.+++|..... .-+++++|.|..||+|.+.... .. ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 78999999999999876554 4578899999999999764332 00 0134
Q ss_pred CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC--eeeEEee----CCCCCCeEEEEEeCCCCEEEEEeCCCcE
Q 001776 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYH----GLGKRSVGVVQFDTTKNRFLAAGDEFMI 622 (1015)
Q Consensus 549 ~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~i~~v~~~~~~~~l~~~~~dg~i 622 (1015)
+|..+|+++.|+|.+..|++++.|. ++.+|...+. -.+.... ++........-|+|+++.+++-+..|-.
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDk----smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADK----SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred CcccceEEEEEccchhhheecccCc----ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 7888999999999999999998765 4999987654 3332222 2223357788899999999999999999
Q ss_pred EEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccc
Q 001776 623 KFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701 (1015)
Q Consensus 623 ~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (1015)
++|.... ..........+|...|..++|+|.|.+|++.+.|.+-|+|..-..+.....+..+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP----------------- 403 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP----------------- 403 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc-----------------
Confidence 9998332 3333333334568899999999999999999999999998654221111111111
Q ss_pred cccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEE
Q 001776 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781 (1015)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~ 781 (1015)
+.|...+++
T Consensus 404 -----------------------------------------------------------------------QiHGyDl~c 412 (764)
T KOG1063|consen 404 -----------------------------------------------------------------------QIHGYDLTC 412 (764)
T ss_pred -----------------------------------------------------------------------cccccccee
Confidence 125555556
Q ss_pred EEEcCCCcEEEEeccCcEEEEeecccc----------------CCCCCCcee----------------------------
Q 001776 782 LIYTNSGLAILALASNAVHKLWKWPRN----------------ERNSTGKAT---------------------------- 817 (1015)
Q Consensus 782 l~~s~dg~~l~~~~~dg~i~vw~~~~~----------------~~~~~~~~~---------------------------- 817 (1015)
++|-+....+++|.+...+++|+.+.. ...+++..+
T Consensus 413 ~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 413 LSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred eehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 666554444555555566666655433 000111000
Q ss_pred -cccCceecCCCCCc-cccccC-----CCCCCCCCccEEEEccCCCEEEEEc-C-----CeEEEEeCCCCceeEEeCCCC
Q 001776 818 -TNQAPQLWQPPSGI-LMTNDI-----SDTNPEDAVPCFALSKNDSYVMSAS-G-----GKISLFNMMTFKTMTTFMPPP 884 (1015)
Q Consensus 818 -~~~~~~~~d~~~~~-~~~~~l-----~~~~~~~~v~~l~~s~dg~~la~~s-d-----g~i~iwd~~~~~~~~~l~~~~ 884 (1015)
+.....+..+.+.. +....+ +-.+|...|.+++.||+|+++|+++ . ..|++|+..+...+..+.+|.
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs 572 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS 572 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc
Confidence 00000111111111 111000 1145999999999999999999997 3 249999999998888999999
Q ss_pred CCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce----EEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 885 ~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~----~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
-.|+.++||| |+++|++.+.|+++.+|...... .....+.|+.-|+++.|+|++.++||+|.|.+|++|......
T Consensus 573 LTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 573 LTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred eEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999999999 99999999999999999986432 123467899999999999999999999999999999998863
Q ss_pred cccceEEEecCCCccccCCceEEEEccC----CC-EEEEE-eCCeEEEEEcC
Q 001776 961 KQASKFLTIPNGRTASALADTRVQFHLD----QT-HLLAV-HETQIAIYEAP 1006 (1015)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~v~~l~fs~d----g~-~l~~~-~d~~i~vwd~~ 1006 (1015)
.....-+ .-..++.+|+++++.|- .. .+++| ..|.|.+|...
T Consensus 652 d~~i~~~----a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 652 DKYISRF----ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred hhhhhhh----chhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 1111111 11223377999999773 22 45557 89999999965
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=278.09 Aligned_cols=286 Identities=17% Similarity=0.279 Sum_probs=245.0
Q ss_pred CCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEc
Q 001776 368 QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY 447 (1015)
Q Consensus 368 g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~ 447 (1015)
..-+|++++.|.+|++|...+|.+.++ +....+.|+.+...||++.||+++.-. |++||+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~ 68 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL 68 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence 345899999999999999999999886 445567899999999999999998765 999999
Q ss_pred cCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEE
Q 001776 448 HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527 (1015)
Q Consensus 448 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~ 527 (1015)
.++..- +..++.+|.+.|+++.|..||+ +++|||.||+++|||++...+.+.++ |..+|+++..+|.. ..|++|
T Consensus 69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~ 142 (311)
T KOG0315|consen 69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISG 142 (311)
T ss_pred cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEee
Confidence 998753 4558999999999999999999 89999999999999999977777776 77999999998766 689999
Q ss_pred eCCCeEEEEeCCCCCceeeecCC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC------eeeEEeeCCCCCC
Q 001776 528 ATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------AVKRTYHGLGKRS 600 (1015)
Q Consensus 528 ~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~------~~~~~~~~~~~~~ 600 (1015)
..+|.|++||+....+...+... ...|.++...|||++++++.. .+..++|++-.+ +++.+++.|.. .
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~ 217 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-H 217 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-e
Confidence 99999999999987665554443 448999999999999998854 456999998764 35567777776 7
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 001776 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1015)
Q Consensus 601 i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1015)
+..+.+||++++|+++|.|.+++||+.++. +....+. +|...++.++||.||++|++++.|+..++|++..+ +.++
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceee
Confidence 888899999999999999999999999988 3444444 44779999999999999999999999999999999 6777
Q ss_pred eecCCccc
Q 001776 680 TVESRTFD 687 (1015)
Q Consensus 680 ~~~~~~~~ 687 (1015)
...+|...
T Consensus 295 qy~gh~K~ 302 (311)
T KOG0315|consen 295 QYQGHHKA 302 (311)
T ss_pred ecCCcccc
Confidence 77777644
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=302.12 Aligned_cols=310 Identities=18% Similarity=0.328 Sum_probs=263.5
Q ss_pred CCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccc-c----ccCCC
Q 001776 345 LPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASL-S----SDYTA 419 (1015)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~h~~ 419 (1015)
.+...++.+.|..+|.+++|+|-...++++|+.|-..++|++....-..... ..++..+ + ...+.
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----------~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----------LVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----------hhhhhhhhhhcccCCccC
Confidence 3456677778999999999999887789999999999999987511111000 0000000 1 11346
Q ss_pred CEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce
Q 001776 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1015)
Q Consensus 420 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~ 499 (1015)
.|++++|+.+|..||+|+.||.++||+...+. +. ++..|+++|.++.|+.+|. +|++++.|+++.+||..+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 89999999999999999999999999987643 44 6888999999999999999 899999999999999999999
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
.+.+.-|..+-..+.|-.. ..+++++.|+.|+++.+....+..++.+|.++|.++.|+|.|..|++++.|+ ++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~----Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDG----TL 383 (524)
T ss_pred EEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCC----ee
Confidence 9999989888666777432 4799999999999999999999999999999999999999999999998755 69
Q ss_pred EEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC---------CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001776 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---------NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~---------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
++|..........+..|.. .|..+.|+|.| ..+++++.|++|++||+..+.++..+..| ..+|.+++|
T Consensus 384 kiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf 460 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF 460 (524)
T ss_pred EeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence 9999999999999999988 89999999976 37899999999999999999999999765 779999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 651 NKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 651 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
+|+|+++|+|+.||.|.+|+..++ ++++..
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~-~l~~s~ 490 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTG-KLVKSY 490 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccch-heeEee
Confidence 999999999999999999999888 455443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=272.50 Aligned_cols=295 Identities=14% Similarity=0.214 Sum_probs=251.1
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe--eeEEeeCCCCC
Q 001776 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKR 599 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 599 (1015)
-+|++++.|.+||+|...++.+..++......|+.+.+.|+++.|++++. ..|++||++++. ++.+|.+|..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-----qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-----QHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-----CeeEEEEccCCCCCceeEEeccCC-
Confidence 58899999999999999999999999999999999999999999999874 359999999875 6889999987
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1015)
.|.++.|..+|+++++||+||+++|||++...+...++. ..+|+++..+|+...|+++..+|.|++||+.+. .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 899999999999999999999999999999655555543 578999999999999999999999999999765 1111
Q ss_pred eecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccc
Q 001776 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1015)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~ 759 (1015)
.+.
T Consensus 161 ~li----------------------------------------------------------------------------- 163 (311)
T KOG0315|consen 161 ELI----------------------------------------------------------------------------- 163 (311)
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 110
Q ss_pred cCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCC
Q 001776 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (1015)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~ 839 (1015)
| .....|+++.+.|||+.++.+...|...+|++..... .+.......++
T Consensus 164 -----------P--e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-----------------~s~l~P~~k~~- 212 (311)
T KOG0315|consen 164 -----------P--EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-----------------ASELEPVHKFQ- 212 (311)
T ss_pred -----------C--CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-----------------cccceEhhhee-
Confidence 0 1335688999999999999999999999999865211 11110111133
Q ss_pred CCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCC-ceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccc
Q 001776 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD 917 (1015)
Q Consensus 840 ~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~ 917 (1015)
.|.+-+..+.+|||+++||+++ |.+++||+.++. +.-..+.+|...+...+||. |++||++|+.|+.+++|++..+
T Consensus 213 -ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 213 -AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccC
Confidence 3899999999999999999998 999999999987 66677899999999999999 9999999999999999999999
Q ss_pred eEEEEEcCccCCeEEEEEe
Q 001776 918 EVKTKLKGHQKRITGLAFS 936 (1015)
Q Consensus 918 ~~~~~l~~h~~~v~~l~~s 936 (1015)
+.++...+|..+..+++..
T Consensus 291 k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 291 KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ceeeecCCcccccEEEEee
Confidence 9999999999888888764
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=306.57 Aligned_cols=477 Identities=17% Similarity=0.251 Sum_probs=341.0
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
.+..|..++|+|... .+.++-..|.|.+||.+-+.++.. +.+|.++|+.++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 456899999999999 667888899999999999988875 789999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+|+.|..|+||+.++.+++. ++.||.+-|..+.|++.-. +|+++|.|.+|+||++.+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999987766 8999999999999999988 899999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCC---------------------------c--eeeecCCCCceEEEEECCCCCE
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLG---------------------------S--RVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------------------------~--~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|+|.. .+++++|.|.+||+||+.... . ...+.+|...|+-++|+|.-..
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 99877 589999999999999974211 0 1235667778999999999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCe--eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001776 566 LFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 643 (1015)
+++|+.|+ .|++|.+..-+ .+.+..+|.+ .|.++-|+|..+.+++.|+|+.|+|||+...+.++++... .+
T Consensus 221 iVSG~DDR----qVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre--nd 293 (1202)
T KOG0292|consen 221 IVSGADDR----QVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE--ND 293 (1202)
T ss_pred EEecCCcc----eeeEEEeccccceeehhhhcccC-CcceEEecCccceeEecCCCccEEEEecccccceeeeecc--CC
Confidence 99998765 59999876543 4556788887 8999999999999999999999999999999999999765 56
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccc
Q 001776 644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (1015)
Q Consensus 644 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1015)
..+.++-+|..+++++|- |+-+.||.++.. +...-+.
T Consensus 294 RFW~laahP~lNLfAAgH-DsGm~VFkleRE-rpa~~v~----------------------------------------- 330 (1202)
T KOG0292|consen 294 RFWILAAHPELNLFAAGH-DSGMIVFKLERE-RPAYAVN----------------------------------------- 330 (1202)
T ss_pred eEEEEEecCCcceeeeec-CCceEEEEEccc-CceEEEc-----------------------------------------
Confidence 889999999999888765 555667766533 1111110
Q ss_pred cccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEec--cCcEEE
Q 001776 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA--SNAVHK 801 (1015)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~--~dg~i~ 801 (1015)
++.+.-. .|..++.+|+.+..... ...+..++ ....++.++.++|....++.++ .+|.-.
T Consensus 331 ---------------~n~LfYv-kd~~i~~~d~~t~~d~~-v~~lr~~g-~~~~~~~smsYNpae~~vlics~~~n~~y~ 392 (1202)
T KOG0292|consen 331 ---------------GNGLFYV-KDRFIRSYDLRTQKDTA-VASLRRPG-TLWQPPRSLSYNPAENAVLICSNLDNGEYE 392 (1202)
T ss_pred ---------------CCEEEEE-ccceEEeeeccccccce-eEeccCCC-cccCCcceeeeccccCeEEEEeccCCCeEE
Confidence 1111111 26778888887633222 22222221 1346788999999877665553 346666
Q ss_pred EeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeC
Q 001776 802 LWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM 881 (1015)
Q Consensus 802 vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~ 881 (1015)
++.++...-. .. ...... ......++-.+.++--+..-++..+.+=++.+ +..+.+.
T Consensus 393 L~~ipk~~~~---~~---------------~~~~~~----k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~ 449 (1202)
T KOG0292|consen 393 LVQIPKDSDG---VS---------------DGKDVK----KGTGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLL 449 (1202)
T ss_pred EEEecCcccc---cC---------------Cchhhh----cCCCCceEEEEecceEEEEecCcceEEecccc-hhhhccc
Confidence 6665532100 00 000000 11222233332222222222245555555543 2222332
Q ss_pred CCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001776 882 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 882 ~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~ 956 (1015)
.. .....|-+.. .|.+|+. ....|.+||++.++.+..+. ...|..+.||+|..+++--+.. +|.|.+.
T Consensus 450 ~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh-~i~i~~k 517 (1202)
T KOG0292|consen 450 LP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKH-TITIADK 517 (1202)
T ss_pred Cc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccc-eEEEEec
Confidence 11 2344455554 5555543 34468888888777666665 4567888888888776665543 4555554
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=282.38 Aligned_cols=339 Identities=17% Similarity=0.253 Sum_probs=288.9
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEe
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 537 (1015)
.|..|...|.+++.+|+.+ +++||+.|....+|++.+|.....+.+|...|+++.|+.++ .+|++|+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg--tlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG--TLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc--eEEEecCCCccEEEEE
Confidence 6888999999999999777 89999999999999999999999999999999999996554 8999999999999999
Q ss_pred CCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe
Q 001776 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1015)
Q Consensus 538 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~ 617 (1015)
..++.....+......+.-+.|+|.+..|++|+.|+ .+++|.+.++...+.+.+|.. ++++-.|.|+|+.++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG----svWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG----SVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCC----cEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 999998888877777888999999999999998765 499999999989999999887 899999999999999999
Q ss_pred CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccccccee
Q 001776 618 DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697 (1015)
Q Consensus 618 ~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1015)
.||+|++||..++.++..+.... .....++.++.++..++.|+.++.+++-+..+| +.+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccc-eEEEecCC--------------
Confidence 99999999999999999987654 346689999999999999999999988877666 22211110
Q ss_pred cccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCc
Q 001776 698 KAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAM 777 (1015)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 777 (1015)
T Consensus 274 -------------------------------------------------------------------------------- 273 (399)
T KOG0296|consen 274 -------------------------------------------------------------------------------- 273 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 778 ~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
.+..+-. + .. .....|.++.+|..-.+
T Consensus 274 ---------~~~~l~~-~-----------------------------------------~e--~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 274 ---------TVPELKP-S-----------------------------------------QE--ELDESVESIPSSSKLPL 300 (399)
T ss_pred ---------CCccccc-c-----------------------------------------ch--hhhhhhhhcccccccch
Confidence 0000000 0 00 01233445556666778
Q ss_pred EEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEe
Q 001776 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (1015)
Q Consensus 858 la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s 936 (1015)
.|+|+ ||+|.|||+...+..+.+. |...|+.+.|-+ ..+|++++.||.|+.||.++|+++.++.||..+|.+++++
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS 377 (399)
T ss_pred hhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc
Confidence 89999 9999999999877777766 888899999986 4689999999999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcc
Q 001776 937 NTLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 937 pdg~~l~s~s~dg~v~vWd~~ 957 (1015)
|++++++|+|.|++.+||++.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=273.85 Aligned_cols=254 Identities=18% Similarity=0.246 Sum_probs=218.9
Q ss_pred ccccCCCCEEEEEEccC-CCEEEEEECCCeEEEEEccCCcee--eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeE
Q 001776 413 LSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
++.+|++.|+.++..+. ...+++++.|.++.+|++...... .....+.||+..|..++.++||+ +.++++.|+++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~--~alS~swD~~l 87 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN--FALSASWDGTL 87 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc--eEEeccccceE
Confidence 47899999999999996 668899999999999998653211 12337899999999999999999 89999999999
Q ss_pred EEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC--CCceEEEEECCC--CCE
Q 001776 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSAD--GAR 565 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~--~~~ 565 (1015)
++||+.+|+..+.|.+|...|.+++|+++. +.+++|+.|++|++|+.-. .+..+.... ..+|.++.|+|+ ...
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn--~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDN--RQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCC--ceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 999999999999999999999999997655 7999999999999999874 444444333 679999999998 678
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
|++++.|+ ++++||+++.+....+.+|.. .++.++++|||..+++|+.||.+.+||++.++.++.+.. ...|
T Consensus 165 Ivs~s~Dk----tvKvWnl~~~~l~~~~~gh~~-~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a---~~~v 236 (315)
T KOG0279|consen 165 IVSASWDK----TVKVWNLRNCQLRTTFIGHSG-YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA---FDIV 236 (315)
T ss_pred EEEccCCc----eEEEEccCCcchhhccccccc-cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC---CCeE
Confidence 88888765 699999999999999999987 899999999999999999999999999999999888854 6789
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
.+++|+|+...|+.+.. ..|+|||+.++ .++..+
T Consensus 237 ~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~~l 270 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVEEL 270 (315)
T ss_pred eeEEecCCceeEeeccC-CceEEEeccch-hhhhhc
Confidence 99999999888877654 46999999987 444333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=295.24 Aligned_cols=436 Identities=15% Similarity=0.219 Sum_probs=333.7
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+..++..|.++.|+|...+++++-.+|.|.||+.++...++ .+.-..-+|.++.|-+..+ ++++|+.|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 45589999999999999999999999999999999988777 6777888999999998887 899999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC-CceeeecCCCCceEEEEECC-CCCEEEEEee
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSA-DGARLFSCGT 571 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 571 (1015)
..+++.+..|..|...|.+++.+|.. .+++++|+|-+|++||.+.. .+...+.+|.+.|.+++|+| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 99999999999999999999999887 69999999999999999865 45778999999999999999 5678999987
Q ss_pred CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEE
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1015)
|+ +|++|.+.+..+..++.+|.. .|+++++-+.| .++++|++|..|+|||..+..+++++.+| ...|+.+.
T Consensus 162 Dr----TVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH--t~Nvs~v~ 234 (794)
T KOG0276|consen 162 DR----TVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH--TNNVSFVF 234 (794)
T ss_pred cc----cEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc--cccceEEE
Confidence 65 699999999999999999988 89999998755 79999999999999999999999999977 56899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccC
Q 001776 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1015)
Q Consensus 650 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1015)
|+|.-..+++|+.||+++||+..+- ++...+.-
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn~---------------------------------------------- 267 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTLNY---------------------------------------------- 267 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhhhc----------------------------------------------
Confidence 9999999999999999999997665 22222110
Q ss_pred CCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccC
Q 001776 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNE 809 (1015)
Q Consensus 730 ~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~ 809 (1015)
...++.+++-.+.++.++.|..+|.+.+=
T Consensus 268 ---------------------------------------------gleRvW~I~~~k~~~~i~vG~Deg~i~v~------ 296 (794)
T KOG0276|consen 268 ---------------------------------------------GLERVWCIAAHKGDGKIAVGFDEGSVTVK------ 296 (794)
T ss_pred ---------------------------------------------CCceEEEEeecCCCCeEEEeccCCcEEEE------
Confidence 22445566667777778888888877652
Q ss_pred CCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcC--CeEEEE------eCCCCceeEE--
Q 001776 810 RNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG--GKISLF------NMMTFKTMTT-- 879 (1015)
Q Consensus 810 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sd--g~i~iw------d~~~~~~~~~-- 879 (1015)
.......+.+++.|+.+-+... ..+.+- ++.+|+.+.-
T Consensus 297 --------------------------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~Lsv 344 (794)
T KOG0276|consen 297 --------------------------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSV 344 (794)
T ss_pred --------------------------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchh
Confidence 1112223445556655443321 112221 2333443221
Q ss_pred --eCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001776 880 --FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 880 --l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~ 957 (1015)
+-...--...++-+| +|++++++ .||.-.||..-..+ .-+-+.-....|++|.+..+.--.++.|+++ +
T Consensus 345 KeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--k 415 (794)
T KOG0276|consen 345 KELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--K 415 (794)
T ss_pred hhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--e
Confidence 111111234577888 89888766 57777777632211 1134556778999998888888888889888 4
Q ss_pred CcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEcCCceEeccC
Q 001776 958 GWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g~~l~~~ 1014 (1015)
..+..++.... ..+.+--.|.+|.+.+++.+++||.++|+.++++
T Consensus 416 nfke~ksi~~~------------~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI 460 (794)
T KOG0276|consen 416 NFKEHKSIRPD------------MSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRI 460 (794)
T ss_pred cceeccccccc------------cceeeecCCceEEEEeCCeEEEEEcccceEEEEE
Confidence 54433221100 1123333566677778999999999999999876
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=294.68 Aligned_cols=609 Identities=16% Similarity=0.214 Sum_probs=391.3
Q ss_pred CCCccccccccceeeeeeCCCCC---CCccccCCCC---------CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCe
Q 001776 313 GISDEVNNLSVNILPVAYTPQSL---GQSSYSTDDL---------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD 380 (1015)
Q Consensus 313 ~~~~~v~~~~~~i~~~~~s~~g~---~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~ 380 (1015)
||...|. |+.|-|.++ .+.+...|.. .-..+.++++ ..+.+++++..-. ...+...|+.
T Consensus 52 GH~a~Vn-------C~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~-~~~~~~ad~~ 122 (764)
T KOG1063|consen 52 GHVARVN-------CVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSS-VMTCKAADGT 122 (764)
T ss_pred CCccceE-------EEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeee-EEEeeccCce
Confidence 6666555 899998888 3455555542 2234455554 5566666666544 3333368999
Q ss_pred EEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCC-EEEEEECCCeEEEEEccCCceeeeeeE
Q 001776 381 VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT-LFGVAYSKHIVHLYTYHGGDELRNHLE 458 (1015)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~-~las~~~dg~v~iwd~~~~~~~~~~~~ 458 (1015)
+.+||.+..+......++ +.-...--.|+++.| .+. .+|.|+.+..|.++.-.++ ......+
T Consensus 123 v~vw~~~~~e~~~~~~~r---------------f~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~e 186 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLR---------------FEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAE 186 (764)
T ss_pred EEEeecCCCceeeehhee---------------hhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEE
Confidence 999999655522211111 111122334666666 333 4566677778888876654 4556668
Q ss_pred EecccCceeEEEEecCCC-ceEEEEEeCCCeEEEEEcCCCc---------------------eEEE----------eeCC
Q 001776 459 IEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWDAVTGT---------------------KQYI----------FEGH 506 (1015)
Q Consensus 459 ~~~h~~~V~~~~~s~~~~-~~~l~s~s~dg~v~vwd~~~~~---------------------~~~~----------~~~h 506 (1015)
+.||.+.|.+++|...+. .++++++|.|..|+||.+.-+. .... +.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 999999999999998776 6789999999999999875322 1111 2399
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee-------ecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
...|.++.|+|.. ..|++++.|.++.+|..++...+.. ..+......+..|+|++..+++-+..| -.
T Consensus 267 eDWV~sv~W~p~~--~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G----g~ 340 (764)
T KOG1063|consen 267 EDWVYSVWWHPEG--LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG----GF 340 (764)
T ss_pred ccceEEEEEccch--hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC----cE
Confidence 9999999997665 6899999999999998776543322 112233578899999999999887654 39
Q ss_pred EEEeCCCC---eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEecCCCCCCcceEEEcC
Q 001776 580 VEWNESEG---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 580 ~iwd~~~~---~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
++|..... .....+.||.+ .|..++|+|.|.++++.|.|.+-+++-.-.. ..+..-+.|+ ...+|++|-+
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~-~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG--yDl~c~~~vn 417 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVD-GVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG--YDLTCLSFVN 417 (764)
T ss_pred EEEeccCccceeeccccccccc-cceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc--ccceeeehcc
Confidence 99983332 34455677776 8999999999999999999999999865411 1233334453 4688999988
Q ss_pred CCCEEEEEeCCCcEEEEEccCCc-eeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCC
Q 001776 653 EGILLAVSTNDNGIKILANADGI-RLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (1015)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1015)
....+++|.+...+|+|+..... +.+..+.+...... .....+...+.+|-....+.+...
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~----~~~p~gA~VpaLGLSnKa~~~~e~-------------- 479 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGS----DELPDGANVPALGLSNKAFFPGET-------------- 479 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCc----hhcccccccccccccCCCCccccc--------------
Confidence 67788888899999999876431 11111111000000 000001112222211111111000
Q ss_pred CCCCCcccccccccccccceeeeeeccccCCc---ceeE-eccCC----CcCCccEEEEEEcCCCcEEEEeccC-----c
Q 001776 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPS---QCRS-LRLPD----NLTAMRVSRLIYTNSGLAILALASN-----A 798 (1015)
Q Consensus 732 ~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~---~~~~-~~~~~----~~~~~~i~~l~~s~dg~~l~~~~~d-----g 798 (1015)
.+|..-+.+. .+.-.-.......|+ ++.. ...|. -+|...|.+++.+|+|+.+++++.. .
T Consensus 480 -----~~G~~~~~~~--et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA 552 (764)
T KOG1063|consen 480 -----NTGGEAAVCA--ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA 552 (764)
T ss_pred -----ccccccceee--ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence 0000000000 000000000000000 0000 01111 4699999999999999999999875 4
Q ss_pred EEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCc--
Q 001776 799 VHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK-- 875 (1015)
Q Consensus 799 ~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~-- 875 (1015)
.|++|+. .+-.... .+.+ |.-.|+.++|||||++|++.+ |.++.+|......
T Consensus 553 vI~lw~t----------------------~~W~~~~-~L~~--HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~ 607 (764)
T KOG1063|consen 553 VIRLWNT----------------------ANWLQVQ-ELEG--HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD 607 (764)
T ss_pred EEEEEec----------------------cchhhhh-eecc--cceEEEEEEECCCCcEEEEeecCceEEeeeeecccch
Confidence 5566643 3322222 2454 999999999999999999999 9999999875422
Q ss_pred --eeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccc--eEEEE--EcCccCCeEEEEEeCC-----CCEEEE
Q 001776 876 --TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD--EVKTK--LKGHQKRITGLAFSNT-----LNVLVS 944 (1015)
Q Consensus 876 --~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~--~~~~~--l~~h~~~v~~l~~spd-----g~~l~s 944 (1015)
.....+.|..-|....|+| ++.++|+++.|++|+||..... +.+.. ...+..+|+.+++.|- +..++.
T Consensus 608 e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vav 686 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAV 686 (764)
T ss_pred hhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEE
Confidence 1233667888999999999 9999999999999999998877 44433 3348889999999862 347788
Q ss_pred EeCCCcEEEEEccCcccc----cceEEEecCCCccccCCceEEEEccC----------CCEEEE-EeCCeEEEEEcC
Q 001776 945 SGADSQLCVWSTDGWEKQ----ASKFLTIPNGRTASALADTRVQFHLD----------QTHLLA-VHETQIAIYEAP 1006 (1015)
Q Consensus 945 ~s~dg~v~vWd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~fs~d----------g~~l~~-~~d~~i~vwd~~ 1006 (1015)
|-+.|.|.+|........ ..........+..+.+.|..++|+|- ...|++ |.|..++++++.
T Consensus 687 Gle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 687 GLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred EecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 999999999997632211 11122334445556688999999975 233566 599999999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=280.29 Aligned_cols=330 Identities=15% Similarity=0.190 Sum_probs=279.2
Q ss_pred EEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 350 ~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
....+|+..|.+++.+|+.+ ++|||+.|..-.||+..+|+.... +.+|+..|+++.||.|
T Consensus 58 ~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~Fshd 117 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCSFSHD 117 (399)
T ss_pred eehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEEEccC
Confidence 33445999999999999776 999999999999999999997765 7899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~ 509 (1015)
|.+||||+-+|.|+||+..++.... .+...-..+.-+.|+|.+. .|+.|+.||.+.+|.+.++...+.+.||+.+
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence 9999999999999999999987665 4545667788999999888 8999999999999999998889999999999
Q ss_pred EEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 510 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
+++=.|.|+ |+.++++..||+|++||+.++.+....... .....++.++..+..++.+..++ .+++-+..+|+
T Consensus 193 ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~----~~~~~~~~sgK 266 (399)
T KOG0296|consen 193 CTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG----VACGVNNGSGK 266 (399)
T ss_pred cccccccCC--CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCc----cEEEEccccce
Confidence 999999765 689999999999999999999888776643 33667888899998888886543 58888888888
Q ss_pred eeEEeeC--------CC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEE
Q 001776 589 VKRTYHG--------LG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (1015)
Q Consensus 589 ~~~~~~~--------~~--~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (1015)
.+....+ +. ...|.++.++..-...++|+.||+|.|||+...++...... ...|..+.|-+ ..+|+
T Consensus 267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h---e~~V~~l~w~~-t~~l~ 342 (399)
T KOG0296|consen 267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH---EDGVTKLKWLN-TDYLL 342 (399)
T ss_pred EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC---CCceEEEEEcC-cchhe
Confidence 8777663 11 12344455555667889999999999999998887777754 45699999998 78999
Q ss_pred EEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcc
Q 001776 659 VSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTD 738 (1015)
Q Consensus 659 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1015)
+++.+|.|+.||.++| ++...+.
T Consensus 343 t~c~~g~v~~wDaRtG-~l~~~y~-------------------------------------------------------- 365 (399)
T KOG0296|consen 343 TACANGKVRQWDARTG-QLKFTYT-------------------------------------------------------- 365 (399)
T ss_pred eeccCceEEeeecccc-ceEEEEe--------------------------------------------------------
Confidence 9999999999999999 4444443
Q ss_pred cccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeecc
Q 001776 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (1015)
Q Consensus 739 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~ 806 (1015)
+|...|.+++++|+++++++++.|++.+||..+
T Consensus 366 -----------------------------------GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 366 -----------------------------------GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----------------------------------cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 377889999999999999999999999998753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=286.54 Aligned_cols=291 Identities=19% Similarity=0.316 Sum_probs=262.9
Q ss_pred eeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
......+|..+|+.+-|+|+-. ++++++.|++|++||..+|+.... +.||.+.|..++|+
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISFD 159 (406)
T ss_pred chhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEEe
Confidence 3444455999999999999998 889999999999999999998665 89999999999999
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~ 507 (1015)
..|++||+++.|-.+.+||..+. ..+...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.++.+|.+|.
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ 235 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHS 235 (406)
T ss_pred cCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCch
Confidence 99999999999999999999863 233337789999999999999998 89999999999999999999999999999
Q ss_pred CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCC---------------CEEEEEeeC
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG---------------ARLFSCGTN 572 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~---------------~~l~~~~~d 572 (1015)
..|..+.. ..||.++++++.|.++++|-+.+.++...+..|.+++.+++|.|.. .++.+++.
T Consensus 236 ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr- 312 (406)
T KOG0295|consen 236 EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR- 312 (406)
T ss_pred HhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc-
Confidence 99998876 4666899999999999999999999999999999999999997642 35666655
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+.+|++||+.++.++.++.+|.. .|..++|+|.|++|+++.+|+++++||+.++++...+..| ..-|+++.|+.
T Consensus 313 ---DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah--~hfvt~lDfh~ 386 (406)
T KOG0295|consen 313 ---DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH--EHFVTSLDFHK 386 (406)
T ss_pred ---cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC--cceeEEEecCC
Confidence 44799999999999999999998 9999999999999999999999999999999999999977 45799999999
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 001776 653 EGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~ 671 (1015)
+..++++|+-|.++++|..
T Consensus 387 ~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCceEEeccccceeeeeec
Confidence 9999999999999999964
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=285.07 Aligned_cols=292 Identities=17% Similarity=0.270 Sum_probs=263.9
Q ss_pred eeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEE
Q 001776 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 348 ~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1015)
++.+.+. |.+.|.|+++.|-.+ .+++|+.|+++.|||+.+|++..+ +.||...|..+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~vr~vav 201 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETVRGVAV 201 (460)
T ss_pred eehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhheeeeeee
Confidence 5556666 999999999999987 889999999999999999998776 8899999999999
Q ss_pred ccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 427 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h 506 (1015)
|+--.||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|+||+.|.++++||+++...+..+.||
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCC
Confidence 9999999999999999999999998887 7889999999999999988 8999999999999999999999999999
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
..+|..+.+.+.. ..+++|+.|++|++||++.++....+..|...+.+++.+|....+++++.|. |..|++..
T Consensus 277 ~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-----ik~w~~p~ 349 (460)
T KOG0285|consen 277 TNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-----IKQWKLPE 349 (460)
T ss_pred CCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-----ceeccCCc
Confidence 9999999987655 5799999999999999999999999999999999999999999999988664 99999999
Q ss_pred CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec---C---CCCCCcceEEEcCCCCEEEEE
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA---D---GGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~---~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
|..+..+.+|.. .+.+++...|+ ++++|+++|.+.+||.++|-..+..+. . .....|.+.+|...|..|++|
T Consensus 350 g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 350 GEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred cchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence 999999988887 88889888775 889999999999999999876655421 1 123458899999999999999
Q ss_pred eCCCcEEEEEccC
Q 001776 661 TNDNGIKILANAD 673 (1015)
Q Consensus 661 ~~dg~i~iw~~~~ 673 (1015)
..|.+|++|.-..
T Consensus 428 eadKtIk~~keDe 440 (460)
T KOG0285|consen 428 EADKTIKMYKEDE 440 (460)
T ss_pred cCCcceEEEeccc
Confidence 9999999997543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=297.44 Aligned_cols=507 Identities=12% Similarity=0.159 Sum_probs=374.7
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCc-ceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC--CC
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--GT 431 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g~ 431 (1015)
|...|.-+. |-|. .++++..++.+.||+..++ +.... +..++......|+++. +|. =+
T Consensus 113 ~~a~v~~l~--~fGe-~lia~d~~~~l~vw~~s~~~~e~~l---------------~~~~~~~~~~~Ital~-HP~TYLN 173 (910)
T KOG1539|consen 113 HGAKVHLLL--PFGE-HLIAVDISNILFVWKTSSIQEELYL---------------QSTFLKVEGDFITALL-HPSTYLN 173 (910)
T ss_pred ccceEEEEe--eecc-eEEEEEccCcEEEEEeccccccccc---------------cceeeeccCCceeeEe-cchhhee
Confidence 555665554 4455 4566788999999998875 21111 1111222223376664 443 45
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
.++.|+.+|.+.+|++++++.+. ++.++...|+++.=+|-=. .++.|..+|+|.+++++.++.+.+|+...++|+
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~---~f~~~~s~IT~ieqsPaLD--VVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVY---TFQEFFSRITAIEQSPALD--VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT 248 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEE---EecccccceeEeccCCcce--EEEEeccCceEEEEEcccCcEEEEEEcccccee
Confidence 78999999999999999998777 7888999999999999888 899999999999999999999999995569999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec-CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC--e
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--A 588 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--~ 588 (1015)
+++|..+++ ..+++++..|.+.+||++..+...... .|.+.+....|.|....+++++.| +...+.++|...| +
T Consensus 249 slSFrtDG~-p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D--nSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 249 SLSFRTDGN-PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD--NSLKVWVFDSGDGVPR 325 (910)
T ss_pred EEEeccCCC-eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC--CceeEEEeeCCCCcch
Confidence 999976665 588888889999999999877665544 677889999999999999998875 3556777776666 4
Q ss_pred eeEEeeCCCCCCeEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCceeEEEe----------------cCCCCCCcceEEEc
Q 001776 589 VKRTYHGLGKRSVGVVQFD-TTKNRFLAAGDEFMIKFWDMDNVNLLASID----------------ADGGLQASPCIRFN 651 (1015)
Q Consensus 589 ~~~~~~~~~~~~i~~v~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------------~~~~~~~v~~v~~s 651 (1015)
.++.-.||.. +..++.|. .+|.++.+++.|++++.+++.....-+.+. ..-...+|..+++.
T Consensus 326 ~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~ 404 (910)
T KOG1539|consen 326 LLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFE 404 (910)
T ss_pred heeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecc
Confidence 5556667766 77888887 678999999999999998864321111110 00112345555554
Q ss_pred CC-----CCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccccccccccccccccc
Q 001776 652 KE-----GILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 726 (1015)
Q Consensus 652 ~~-----~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1015)
.. .+.++..-.+...+.|+..+...-...+............ ..
T Consensus 405 ~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~-------------------------------~a 453 (910)
T KOG1539|consen 405 NAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA-------------------------------TA 453 (910)
T ss_pred cchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce-------------------------------EE
Confidence 32 2455556677889999987651112222211110000000 01
Q ss_pred ccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeecc
Q 001776 727 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (1015)
Q Consensus 727 ~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~ 806 (1015)
++. .+-|+..+.|.+.|.|.+|++..+-..... .....|...|++++...-++.+++++.+|.+++|++.
T Consensus 454 v~v------s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf----~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 454 VCV------SFCGNFVFIGYSKGTIDRFNMQSGIHRKSF----GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred EEE------eccCceEEEeccCCeEEEEEcccCeeeccc----ccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 111 123667888999999999998754332222 1234599999999999999999999999999999876
Q ss_pred ccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCC
Q 001776 807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPP 885 (1015)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~ 885 (1015)
.... + ..+. -...+.++.++.....+|.+. |-.|+++|+.+.+.++.|.||..
T Consensus 524 ~k~l----------------------~-~~l~---l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n 577 (910)
T KOG1539|consen 524 KKVL----------------------K-KSLR---LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN 577 (910)
T ss_pred Ccce----------------------e-eeec---cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc
Confidence 4321 0 0111 355677888888888888887 67899999999999999999999
Q ss_pred CeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCC-CcEEEEEccC
Q 001776 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD-SQLCVWSTDG 958 (1015)
Q Consensus 886 ~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d-g~v~vWd~~~ 958 (1015)
.|+.++||| ||++|++++.|++|++||+.++.++-.+. -..+.+++.|||+|.+|||+..| .-|++|-=.+
T Consensus 578 ritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 578 RITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred ceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchh
Confidence 999999999 99999999999999999999999998876 56789999999999999999988 5699997443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=261.99 Aligned_cols=290 Identities=21% Similarity=0.331 Sum_probs=237.6
Q ss_pred EEEec-cCCCeeEEEeccC-CCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 350 VMTLN-QGSAVKSMDFHPV-QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 350 ~~~~~-h~~~V~~~~~sp~-g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
++.+. |.+.|+.++|+|- |. +||+|+.|..|+||+...+.....+ ..+-.+|+..|++++|+
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck---------------~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCK---------------TVLDDGHKRSVRSVAWS 70 (312)
T ss_pred EEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEE---------------Eeccccchheeeeeeec
Confidence 34444 8999999999998 77 8999999999999999854332211 11235899999999999
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC---ceEEEee
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---TKQYIFE 504 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~---~~~~~~~ 504 (1015)
|.|++||+|+.|.++.||.-..++ +....+++||...|.|++|+++|. +||+|+.|++|-||.+..+ +++..++
T Consensus 71 p~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~ 147 (312)
T KOG0645|consen 71 PHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQ 147 (312)
T ss_pred CCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence 999999999999999999877654 555668999999999999999999 8999999999999998754 5678899
Q ss_pred CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC---CceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEE
Q 001776 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL---GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 505 ~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
.|...|..+.|+|.. .+|++++.|++|++|+-... .+..++.++...+.+++|++.|.++++++.|+ ++++
T Consensus 148 ~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~----tv~I 221 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG----TVSI 221 (312)
T ss_pred cccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc----ceEe
Confidence 999999999999987 59999999999999976632 34677888888999999999999999997654 6999
Q ss_pred EeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc------eeEEEecCCCCCCcceEEEcCC-C
Q 001776 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN------LLASIDADGGLQASPCIRFNKE-G 654 (1015)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-~ 654 (1015)
|-.. ..+...+...++.+.|. ...|++++.|+.|++|.-...- .+.. ..+.|...|++++|+|. .
T Consensus 222 w~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~ 293 (312)
T KOG0645|consen 222 WRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVS 293 (312)
T ss_pred eeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCC
Confidence 9754 23334444478889998 4589999999999999765421 1111 12244668999999994 6
Q ss_pred CEEEEEeCCCcEEEEEcc
Q 001776 655 ILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~ 672 (1015)
.+|+++++||.+++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=272.68 Aligned_cols=480 Identities=17% Similarity=0.264 Sum_probs=349.2
Q ss_pred CCCccccccccceeeeeeCCCCCCCcccc---------------CCCCCceeEEEec-cCCCeeEEEeccC--CCeEEEE
Q 001776 313 GISDEVNNLSVNILPVAYTPQSLGQSSYS---------------TDDLPKTVVMTLN-QGSAVKSMDFHPV--QQILLVV 374 (1015)
Q Consensus 313 ~~~~~v~~~~~~i~~~~~s~~g~~~~~~~---------------~~~~~~~~~~~~~-h~~~V~~~~~sp~--g~~lla~ 374 (1015)
||.+.|- |+...|+--++++.. +|...-..++.++ ....|+|++||+. |..+++.
T Consensus 102 GH~ddik-------c~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~v 174 (626)
T KOG2106|consen 102 GHNDDIK-------CMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAV 174 (626)
T ss_pred CCCCceE-------EEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEe
Confidence 7777555 677777665555442 2222233444455 6789999999984 4434333
Q ss_pred E-ecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCcee
Q 001776 375 G-TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453 (1015)
Q Consensus 375 g-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~ 453 (1015)
- +.+..+.|||+..+..... ....++.|....|.|.+..|+.....|.+..|+.+++...
T Consensus 175 D~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~ 235 (626)
T KOG2106|consen 175 DDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLV 235 (626)
T ss_pred cCCCccccchhhchhhhccCc-------------------ceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceE
Confidence 2 3355688999988776543 3345678899999997666666666778999999999887
Q ss_pred eeeeEEeccc-CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCe
Q 001776 454 RNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532 (1015)
Q Consensus 454 ~~~~~~~~h~-~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~ 532 (1015)
+....++.++ ..|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...++ .|++|+.|+.
T Consensus 236 k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G---tllSGgKDRk 309 (626)
T KOG2106|consen 236 KRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG---TLLSGGKDRK 309 (626)
T ss_pred EEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc---cEeecCccce
Confidence 7766666554 5799999999998 8999999999999988877777777999999999986543 6777999999
Q ss_pred EEEEeCCCCCceee--ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 533 IKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 533 i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
|..|| ..-+.... +....+.++.++-...+ |+++.. .+.|..=.++.+-. ....+|.+ ....++.+|+.
T Consensus 310 i~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTt----rN~iL~Gt~~~~f~-~~v~gh~d-elwgla~hps~ 380 (626)
T KOG2106|consen 310 IILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTT----RNFILQGTLENGFT-LTVQGHGD-ELWGLATHPSK 380 (626)
T ss_pred EEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeec----cceEEEeeecCCce-EEEEeccc-ceeeEEcCCCh
Confidence 99999 33333322 33334466666543323 555543 22354444444432 34455665 78889999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccc
Q 001776 611 NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 690 (1015)
+.+++++.|+.+++|+ ..+++-+... ..++.|+.|+|.| .+|.|+..|...+.|.++. .++..-.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-~lv~~~~-------- 445 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAECADFHPSG-VVAVGTATGRWFVLDTETQ-DLVTIHT-------- 445 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEEe---cCceeEeeccCcc-eEEEeeccceEEEEecccc-eeEEEEe--------
Confidence 9999999999999999 4445444433 3467899999999 9999999999999998774 2221110
Q ss_pred ccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEecc
Q 001776 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (1015)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~ 770 (1015)
T Consensus 446 -------------------------------------------------------------------------------- 445 (626)
T KOG2106|consen 446 -------------------------------------------------------------------------------- 445 (626)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEE
Q 001776 771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1015)
Q Consensus 771 ~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~ 850 (1015)
.+.++..+.|+|+|.+||.|+.|+.|.+|.++...+ ..... +..+..+|+.+.
T Consensus 446 ----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------------------~y~r~--~k~~gs~ithLD 498 (626)
T KOG2106|consen 446 ----DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------------------KYSRV--GKCSGSPITHLD 498 (626)
T ss_pred ----cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------------------EEEEe--eeecCceeEEee
Confidence 246788999999999999999999999998764321 11110 111458899999
Q ss_pred EccCCCEEEEEc-CCeEEEEeCCCCceeE--------------Ee----CCCCCCeeEEEEcCCCCcEEEEEEcCCeEEE
Q 001776 851 LSKNDSYVMSAS-GGKISLFNMMTFKTMT--------------TF----MPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 911 (1015)
Q Consensus 851 ~s~dg~~la~~s-dg~i~iwd~~~~~~~~--------------~l----~~~~~~i~~l~~sp~d~~~la~g~~dg~v~v 911 (1015)
||+|++++.+-+ |-.|-.|......... -| ..+...|..++-+. +.+++|+|.+.|.|++
T Consensus 499 wS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gdd~g~v~l 577 (626)
T KOG2106|consen 499 WSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGDDFGKVHL 577 (626)
T ss_pred ecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccccCceEEE
Confidence 999999999998 8889999432211111 11 13455677788888 8899999999999999
Q ss_pred EEcccc---eEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001776 912 YNVRVD---EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 912 wd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~ 956 (1015)
|...-. .....+.+|++.|++++|+-+...|.+.+.|..|..|++
T Consensus 578 f~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 578 FSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred EccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 987543 345677899999999999988888888889999999986
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=270.16 Aligned_cols=520 Identities=14% Similarity=0.163 Sum_probs=373.7
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCC
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 440 (1015)
.+-+-|.|..+...+ +.+.+++++...+.. +.+|+..|.|++.+||.-.+++|-..|
T Consensus 70 Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~vHPdri~vatGQ~ag 126 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMAVHPDRIRVATGQGAG 126 (626)
T ss_pred eeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEeecCCceeeccCcccc
Confidence 456677777444433 446777776543332 689999999999999999999875544
Q ss_pred --------eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEE--EEeCCCeEEEEEcCCCceEEEeeCCCCCE
Q 001776 441 --------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV--TCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 441 --------~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~--s~s~dg~v~vwd~~~~~~~~~~~~h~~~v 510 (1015)
.|+|||..+-..+. .+......|+|++||+-....++. --+.+..+.+||...+......+..+..|
T Consensus 127 ~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v 203 (626)
T KOG2106|consen 127 TSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVV 203 (626)
T ss_pred cCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceE
Confidence 49999977644444 566677889999999854321232 23556678999999998888888788889
Q ss_pred EEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee---ecC-CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~-~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
....|+|..+ +++++++ .+.+.+|+++.+..... +.. ....|.+++|.++|..+- + |.++.|.||+..+
T Consensus 204 ~~a~FHPtd~-nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT-g----DS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 204 FLATFHPTDP-NLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT-G----DSGGNILIWSKGT 276 (626)
T ss_pred EEEEeccCCC-cEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe-e----cCCceEEEEeCCC
Confidence 9999999775 4666655 48999999887655432 222 224799999999997543 3 3456799999988
Q ss_pred CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcE
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 666 (1015)
.+..+....|.+ .|.+++.-.+|. |++|+.|..|..|| ..-+.++..+.+...+.|..++=...+ |+.|+..+.|
T Consensus 277 ~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~i 351 (626)
T KOG2106|consen 277 NRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFI 351 (626)
T ss_pred ceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceE
Confidence 888888776666 899999999886 45599999999999 555556666555556677776644333 7778877777
Q ss_pred EEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccc
Q 001776 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1015)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1015)
..=.++++..+. .++|....+... ..|+...+++++
T Consensus 352 L~Gt~~~~f~~~--v~gh~delwgla------------------------------------------~hps~~q~~T~g 387 (626)
T KOG2106|consen 352 LQGTLENGFTLT--VQGHGDELWGLA------------------------------------------THPSKNQLLTCG 387 (626)
T ss_pred EEeeecCCceEE--EEecccceeeEE------------------------------------------cCCChhheeecc
Confidence 766666653333 333333322110 124567899999
Q ss_pred cccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecC
Q 001776 747 AVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (1015)
Q Consensus 747 ~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d 826 (1015)
.|+.+++|+ . ....-.+. -..+..++.|.|.| .++.|...|...+.|..
T Consensus 388 qdk~v~lW~-~--~k~~wt~~-------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e-------------------- 436 (626)
T KOG2106|consen 388 QDKHVRLWN-D--HKLEWTKI-------IEDPAECADFHPSG-VVAVGTATGRWFVLDTE-------------------- 436 (626)
T ss_pred CcceEEEcc-C--CceeEEEE-------ecCceeEeeccCcc-eEEEeeccceEEEEecc--------------------
Confidence 999999999 2 11111111 35678999999999 89999999988887654
Q ss_pred CCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCC-ceeEEeC-CCCCCeeEEEEcCCCCcEEEEE
Q 001776 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFM-PPPPAATFLAFHPQDNNIIAIG 903 (1015)
Q Consensus 827 ~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~l~-~~~~~i~~l~~sp~d~~~la~g 903 (1015)
+..++.... ...++++++|+|||.+||.|+ |+.|+||.+... ....... .+..+|+.+.||+ |++++.+-
T Consensus 437 --~~~lv~~~~----d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~ 509 (626)
T KOG2106|consen 437 --TQDLVTIHT----DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSN 509 (626)
T ss_pred --cceeEEEEe----cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEec
Confidence 322222111 467899999999999999999 999999998653 3333322 2347899999999 99999999
Q ss_pred EcCCeEEEEEcccceEEEE-----------------E-cCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccce
Q 001776 904 MEDSSIQIYNVRVDEVKTK-----------------L-KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASK 965 (1015)
Q Consensus 904 ~~dg~v~vwd~~~~~~~~~-----------------l-~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~ 965 (1015)
+-|-.|..|.....+.+.. + ..|...|..++-+.+.+++|+|.+.|.|++|...--+.. .
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r--A 587 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR--A 587 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc--c
Confidence 9999999994332211111 1 124555677777888999999999999999997654432 2
Q ss_pred EEEecCCCccccCCceEEEEccCCCEEEE-EeCCeEEEEEc
Q 001776 966 FLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEA 1005 (1015)
Q Consensus 966 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~ 1005 (1015)
......+|. +-|++++|+.+...|.+ +.|.+|..|++
T Consensus 588 ~~he~~ghs---~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 588 PSHEYGGHS---SHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cceeecccc---ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 355566666 56999999999888888 69999999987
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=268.65 Aligned_cols=286 Identities=16% Similarity=0.233 Sum_probs=249.4
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (1015)
..+|++.|..+.|+|+|. ++|+|+.|..|.+|++.....-. .++++|+++|..+.|.+|++
T Consensus 43 l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d~s 103 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRDGS 103 (338)
T ss_pred cCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccCCC
Confidence 445999999999999999 89999999999999975543221 12679999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
.|++++.|.+|+.||+++|++.+ .+++|..-|+.+.-+.-|.. ++.+++.|+++++||+++...++++. ....++
T Consensus 104 ~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 104 HILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 99999999999999999999887 67889999999996666665 78899999999999999999988886 456789
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC----
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---- 587 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~---- 587 (1015)
++.|.... ..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++++-+.|. ++++||.+-.
T Consensus 179 Av~f~d~s--~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~----tvrvwd~rp~~p~~ 252 (338)
T KOG0265|consen 179 AVGFKDTS--DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN----TVRVWDVRPFAPSQ 252 (338)
T ss_pred EEEecccc--cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc----eEEEEEecccCCCC
Confidence 99886544 6899999999999999999999999999999999999999999999988754 6999998743
Q ss_pred eeeEEeeCCCC---CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001776 588 AVKRTYHGLGK---RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 588 ~~~~~~~~~~~---~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
+++..+.++.. ......+|+|++..+-+|+.|..+++||......+..+.+| ...|++++|+|...+|.+++.|.
T Consensus 253 R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh--~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 253 RCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH--YGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc--ceeEEEeeecCCCcEEEEeccCc
Confidence 45777777632 13456789999999999999999999999998999999877 66899999999999999999999
Q ss_pred cEEEE
Q 001776 665 GIKIL 669 (1015)
Q Consensus 665 ~i~iw 669 (1015)
+|++=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 99873
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=264.92 Aligned_cols=251 Identities=18% Similarity=0.319 Sum_probs=218.7
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++.... .....+++|+++|..+.|.+|+. .++++|.|.+++.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 478999999999999999999999999999999976532 23346889999999999999999 89999999999999
Q ss_pred EcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
|+++|++++.+++|...|+++....- +-.++.+++.|+++++||++.......+.. ..+++++.|..++..+.+++.|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeecccc
Confidence 99999999999999999999974332 336788999999999999998777666543 4588999999999999999886
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC----CceeEEEecCCCCCC--cc
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN----VNLLASIDADGGLQA--SP 646 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~--v~ 646 (1015)
++ |++||++.......+.+|.+ .|+.+..+|+|.++.+-+.|.++++||++. ..++..+.++.+.-. ..
T Consensus 196 n~----ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL 270 (338)
T KOG0265|consen 196 ND----IKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLL 270 (338)
T ss_pred Cc----eeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcc
Confidence 54 99999999999999999998 999999999999999999999999999874 345777776654433 34
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 647 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.++|+|++..+.+|+.|..+++||....
T Consensus 271 ~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 271 KCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred eeeccCCCCccccccccceEEEeecccc
Confidence 7889999999999999999999997654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=288.98 Aligned_cols=284 Identities=20% Similarity=0.330 Sum_probs=250.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
-...|..+.|.|+|++ |++|+..|.+.+|+..+-. | ..++..|..+|+++.||++|.+++
T Consensus 95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmi 154 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMI 154 (464)
T ss_pred cccceeeEEEcCCCce-eEeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEE
Confidence 5568999999999995 6899999999999974321 1 113678999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEec-ccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
+|+.+|.|++|+..-.. ++ .+.+ |...|.+++|+|+.. .+++||.||+|+|||....+....+.+|.-.|.++
T Consensus 155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv 228 (464)
T KOG0284|consen 155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV 228 (464)
T ss_pred EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence 99999999999987543 22 3444 458999999999888 79999999999999999999888999999999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEe
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~ 593 (1015)
.|+|.. .+|++++.|..|++||.+++.++..+..|...|..+.|+|++++|++++.|. .++++|+++.+.+.++
T Consensus 229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~----~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ----SCKVFDIRTMKELFTY 302 (464)
T ss_pred ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc----eEEEEehhHhHHHHHh
Confidence 999877 6999999999999999999999999999999999999999999999998755 6999999999999999
Q ss_pred eCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 594 HGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 594 ~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
++|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+++..+. .+|...|++++|+|-|..|++|+.|.++++|.-.
T Consensus 303 r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 303 RGHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred hcchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99998 89999999965 567778899999999998666666654 3567789999999999999999999999999754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=287.53 Aligned_cols=249 Identities=18% Similarity=0.328 Sum_probs=222.9
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+...+..|..++|+|...+++++-..|.|.+||.+-+.++. .|..|.++|..++|+|++. ++++|+.|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44566889999999999999999999999999999998777 7889999999999999999 899999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
.++.+++.++.||-..|..+.|++.- .+|+++|+|.+|+||++.+..++..+++|.+.|.|..|+|....+++++-|.
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 99999999999999999999998766 6999999999999999999999999999999999999999999999998755
Q ss_pred CCCceEEEEeCCCCe-----------------------------eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 001776 574 EGESYLVEWNESEGA-----------------------------VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~v 624 (1015)
+|++||+..-+ ....+.||.. .|+.++|+|.-..|++|++|..|++
T Consensus 158 ----TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR-GVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 158 ----TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR-GVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ----eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc-ccceEEecCCcceEEecCCcceeeE
Confidence 69999985211 1245567776 8999999999999999999999999
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
|.+...+.-..-...+|...|.++-|+|...++++.+.|++|+|||+...
T Consensus 233 WrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 233 WRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 99987664444344455889999999999999999999999999999765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=272.48 Aligned_cols=306 Identities=18% Similarity=0.257 Sum_probs=265.2
Q ss_pred CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 497 GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 497 ~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
....+.+.+|..+|+.+-|+|.. ..+++++.|++|++||..+++....+.+|...+..++|+..|+++++++.|-
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~--~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl--- 172 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSE--ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDL--- 172 (406)
T ss_pred CCchhhhhccccceeeeeeccCc--eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCcc---
Confidence 34556778899999999998776 6888999999999999999999888999999999999999999999998653
Q ss_pred ceEEEEeCCC-CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC
Q 001776 577 SYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 577 ~~i~iwd~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
.+.+||..+ .++++...+|.. .|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+| ...|..++.+.||.
T Consensus 173 -~~~LWd~~~~~~c~ks~~gh~h-~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h--~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 173 -SAKLWDFDTFFRCIKSLIGHEH-GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH--SEWVRMVRVNQDGT 248 (406)
T ss_pred -chhheeHHHHHHHHHHhcCccc-ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc--hHhEEEEEecCCee
Confidence 399999887 567777788876 8999999999999999999999999999999999999977 66899999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCC
Q 001776 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (1015)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1015)
.+|+++.|.++++|-+.++ .+...++
T Consensus 249 i~As~s~dqtl~vW~~~t~-~~k~~lR----------------------------------------------------- 274 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATK-QCKAELR----------------------------------------------------- 274 (406)
T ss_pred EEEecCCCceEEEEEeccc-hhhhhhh-----------------------------------------------------
Confidence 9999999999999988776 2222222
Q ss_pred CcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCc
Q 001776 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGK 815 (1015)
Q Consensus 736 ~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 815 (1015)
.|...|.+++|.|...+ ....+
T Consensus 275 --------------------------------------~hEh~vEci~wap~~~~--~~i~~------------------ 296 (406)
T KOG0295|consen 275 --------------------------------------EHEHPVECIAWAPESSY--PSISE------------------ 296 (406)
T ss_pred --------------------------------------ccccceEEEEecccccC--cchhh------------------
Confidence 26677888888887530 00000
Q ss_pred eecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcC
Q 001776 816 ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 894 (1015)
Q Consensus 816 ~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp 894 (1015)
-. .... .++++.+++ |++|++||+.++.++.++.+|...|..++|+|
T Consensus 297 ---------------------at---~~~~--------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 297 ---------------------AT---GSTN--------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP 344 (406)
T ss_pred ---------------------cc---CCCC--------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence 00 0000 567899999 99999999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001776 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 895 ~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~ 956 (1015)
+|+||+++.+|+++++||++++++..++.+|..-|+++.|..+..+++||+-|.++++|.-
T Consensus 345 -~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 -GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999973
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=269.30 Aligned_cols=246 Identities=18% Similarity=0.292 Sum_probs=228.7
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
++.+|.+.|.|+++.|-..++++|+.|++++|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 578999999999999999999999999999999999998655 7899999999999998888 89999999999999
Q ss_pred EcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-...+++++.|
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999999999999999998877 589999999999999999999999999999999999999988999999876
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
. +|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+.+| ...|++++.+.
T Consensus 299 ~----tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~ns 370 (460)
T KOG0285|consen 299 S----TVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNS 370 (460)
T ss_pred c----eEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhccccc--cceeeeeeecc
Confidence 5 699999999999999988887 89999999999999998876 6999999999999988766 67889999988
Q ss_pred CCCEEEEEeCCCcEEEEEccCC
Q 001776 653 EGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
|| ++++|+++|.+.+||..+|
T Consensus 371 D~-v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 371 DG-VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred Cc-eEEEcCCceEEEEEecCcC
Confidence 77 7778999999999999988
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=305.71 Aligned_cols=286 Identities=20% Similarity=0.345 Sum_probs=250.8
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcc--eEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE--RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (1015)
+...|.++.|||+|+ .+++++.|+.+++|+..+++ .+.. +.+|...|++++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeEECCCCcE
Confidence 478999999999999 58999999999999997766 3332 5789999999999999999
Q ss_pred EEEEECCCeEEEEEc-cCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 433 FGVAYSKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
+++|+.|++|+|||+ ..+..++ ++.+|...|++++|+|+++ .+++|+.|++|++||+++++++..+.+|...|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7899999999999999997 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCC--ceeeecCCCC--ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGH--SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
+++|.++ +++|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++.|+ .+++||+..+
T Consensus 293 ~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKLWDLRSG 366 (456)
T ss_pred EEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEEEEccCC
Confidence 9998654 4899999999999999999888 3344444443 589999999999999998654 5999999999
Q ss_pred eeeEEeeCCCCC--CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe--CC
Q 001776 588 AVKRTYHGLGKR--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST--ND 663 (1015)
Q Consensus 588 ~~~~~~~~~~~~--~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~d 663 (1015)
.....+.+|... .+.....++.+.++++|+.|+.|++||..++..+..+.+|. ...+..+.+++...++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 34445567899999999999999999999999999888775 56788999999999999998 78
Q ss_pred CcEEEEEcc
Q 001776 664 NGIKILANA 672 (1015)
Q Consensus 664 g~i~iw~~~ 672 (1015)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 999999653
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-29 Score=263.23 Aligned_cols=550 Identities=13% Similarity=0.134 Sum_probs=380.3
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccc-cCCCCEEEEEEccCCCEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS-DYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~l 433 (1015)
..++|+++|||.+.+ .||.|-.||.|.||++..+-.... ++. +....|.+++|+ ++..|
T Consensus 24 ~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~------------------vi~g~~drsIE~L~W~-e~~RL 83 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEP------------------VIHGPEDRSIESLAWA-EGGRL 83 (691)
T ss_pred eccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeE------------------EEecCCCCceeeEEEc-cCCeE
Confidence 557899999999988 579999999999999988643321 233 445789999999 66678
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE--EeeCCCCCEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFEGHESPVY 511 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--~~~~h~~~v~ 511 (1015)
.+.+.+|.|.-||+.+++... .+....+.|++++.+|.+. .++.|+.||.+...+...++... .|...+++|.
T Consensus 84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 888999999999999987665 6777889999999999998 79999999988888888777654 4445568899
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC--------CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--------PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
++.|+++. ..+++|+.||.|++||...+........ ...-|.++.|-.++ .|++| |..+.|.+||
T Consensus 159 slsw~~~~--~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~FWd 231 (691)
T KOG2048|consen 159 SLSWNPTG--TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVTFWD 231 (691)
T ss_pred EEEecCCc--cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEEEEc
Confidence 99986654 6799999999999999998777652211 11246777777554 56655 4466899999
Q ss_pred CCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce--eEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL--LASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
...+.+++.+..|.. .|.+++..+++++++++|.|+.|.-|...+... +.......|...|.+++..++ .+++|+
T Consensus 232 ~~~gTLiqS~~~h~a-dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDA-DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred ccCcchhhhhhhhhc-ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecc
Confidence 999999999999887 899999999999999999999999998776533 333333344668899999876 899999
Q ss_pred CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccc
Q 001776 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741 (1015)
Q Consensus 662 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1015)
.|..+.+-....- ....|..... - | ..+.......++
T Consensus 309 ~d~~l~i~~s~~~-----~~~~h~~~~~-------------~------------------p-------~~~~v~~a~~~~ 345 (691)
T KOG2048|consen 309 RDFTLAICSSREF-----KNMDHRQKNL-------------F------------------P-------ASDRVSVAPENR 345 (691)
T ss_pred eeeEEEEcccccc-----Cchhhhcccc-------------c------------------c-------ccceeecCccce
Confidence 9998887544321 0111110000 0 0 000001122344
Q ss_pred ccccccccceeeeeeccccCCcc---eeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceec
Q 001776 742 KIADEAVEKSRIWKLTEITEPSQ---CRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATT 818 (1015)
Q Consensus 742 l~~~~~d~~v~iw~~~~~~~~~~---~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 818 (1015)
+..-..+..+.+|.+......+. ...+.+. ......|.+.+.||+|++++.+.-. ..++|.+.... ..
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~-~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~-----~v-- 416 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLF-TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDP-----NV-- 416 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeee-cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCc-----ce--
Confidence 55555567778888775532211 1111111 1245679999999999988877643 56777665321 00
Q ss_pred ccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc--CCeEEEEeCCCCc--eeEEeC--CCCCCeeEEEE
Q 001776 819 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK--TMTTFM--PPPPAATFLAF 892 (1015)
Q Consensus 819 ~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~--~~~~l~--~~~~~i~~l~~ 892 (1015)
.+-..+. .+. ..-....+.|+-|+..+...+ +..+.+++.++.. .+..+. +....|+.++.
T Consensus 417 ----k~~~v~~-------~~~--~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~ 483 (691)
T KOG2048|consen 417 ----KVINVDD-------VPL--ALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVV 483 (691)
T ss_pred ----eEEEecc-------chh--hhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEE
Confidence 0000000 000 234567788888888777766 5778888876543 333322 34567999999
Q ss_pred cCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEe-CCCCEEEEEeCCCcEEEEEccCcccccceEEEe--
Q 001776 893 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI-- 969 (1015)
Q Consensus 893 sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s-pdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~-- 969 (1015)
|| +|+++|+.+.+|.|.+|++++++.......-...|+.++|+ ++.+.|+.+..|+.|.-+|++......+.....
T Consensus 484 Ss-dG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~n 562 (691)
T KOG2048|consen 484 SS-DGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRN 562 (691)
T ss_pred cC-CCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccc
Confidence 99 99999999999999999999887554443445789999999 456789999999999999995533222211111
Q ss_pred -cCCCccccCCceEEEEccCCCEEEEE-eCCeEEEEEc
Q 001776 970 -PNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEA 1005 (1015)
Q Consensus 970 -~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~ 1005 (1015)
+.....-...+..+.|+|.....+.. ..+-+.+.|.
T Consensus 563 lpk~~~~l~~~~~gisfd~~n~s~~~~~~a~w~~~id~ 600 (691)
T KOG2048|consen 563 LPKEPKTLIPGIPGISFDPKNSSRFIVYDAHWSCLIDF 600 (691)
T ss_pred cccChhhcCCCCceEEeCCCCccEEEEEcCcEEEEEec
Confidence 11111111568889998776655554 3444555554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=285.54 Aligned_cols=293 Identities=18% Similarity=0.273 Sum_probs=250.0
Q ss_pred CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCC-cceEeEeeeEEEeccCCCccccccccccCCCCEEE
Q 001776 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNR 423 (1015)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 423 (1015)
|+..++++. |+..|+++.|.|-.-.|+++|+.|+.|+||++.. ++++++ +.+|..+|.+
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~Vrd 263 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPVRD 263 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh-------------------hhcchhhhhh
Confidence 677888877 9999999999994445999999999999999977 777765 8899999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe
Q 001776 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 424 l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 503 (1015)
++|+++|..+++++.|+.|++||+++|+++.. +. -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.++++
T Consensus 264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence 99999999999999999999999999997763 32 3456899999999955 7999999999999999999999999
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee-ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
..|-+.|..+.|.+. |..+++.++|+++++|+.+..-.+.. .....+...++..+|+++++++-+. ++.|.++
T Consensus 339 d~hLg~i~~i~F~~~--g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~if 412 (503)
T KOG0282|consen 339 DRHLGAILDITFVDE--GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIF 412 (503)
T ss_pred HhhhhheeeeEEccC--CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEE
Confidence 999999999998654 48999999999999999987655433 3334457789999999999998765 4468888
Q ss_pred eCCCC---eeeEEeeCCCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC-CCEE
Q 001776 583 NESEG---AVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-GILL 657 (1015)
Q Consensus 583 d~~~~---~~~~~~~~~~~~-~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~~l 657 (1015)
..... ...+.+.+|... .-..+.|||||.+|++|+.||.+++||.++-+++..++.| ...+..+.|+|. ...+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah--~~~ci~v~wHP~e~Skv 490 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH--DQPCIGVDWHPVEPSKV 490 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC--CcceEEEEecCCCccee
Confidence 76532 334567777542 3456899999999999999999999999999999999877 678999999994 4789
Q ss_pred EEEeCCCcEEEEE
Q 001776 658 AVSTNDNGIKILA 670 (1015)
Q Consensus 658 ~~~~~dg~i~iw~ 670 (1015)
|+++.||.|++|+
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-29 Score=266.28 Aligned_cols=490 Identities=13% Similarity=0.153 Sum_probs=344.2
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecc-cCceeEEEEecCCCceEEEEEeCCCeEEEEEcC
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAH-VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h-~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~ 495 (1015)
-..+|+++|||.+.+.||.+-.+|.|.||++..+=.... .+.++ +..|.+++|++.++ |.+.+.+|+|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 347999999999999999999999999999998643332 45544 56799999996665 8999999999999999
Q ss_pred CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee--ecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 496 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+++....+....+.|++++.++.. ..++.|+.||.+..++...+..... +....+.+.+++|+|++..++.|+.|+
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 999999999999999999998776 6899999999877777766554433 344557899999999999999998754
Q ss_pred CCCceEEEEeCCCCeeeEEeeC-----C--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001776 574 EGESYLVEWNESEGAVKRTYHG-----L--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~-----~--~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 646 (1015)
.|++||..++..+..... . ...-|.++.+-.+ ..|++|...|+|.+||...+.+++....| ...|.
T Consensus 177 ----~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl 249 (691)
T KOG2048|consen 177 ----VIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH--DADVL 249 (691)
T ss_pred ----eEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh--hccee
Confidence 799999999877662211 1 1223666777655 58999999999999999999999999877 66899
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCCceee---eeecCCccccccccccceecccccccccccccccccccccccccc
Q 001776 647 CIRFNKEGILLAVSTNDNGIKILANADGIRLL---RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (1015)
Q Consensus 647 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1015)
+++.++++.++++++.|+.|.-|...++.... .....|...+...
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~-------------------------------- 297 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM-------------------------------- 297 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee--------------------------------
Confidence 99999999999999999999999887763311 1111222221111
Q ss_pred cccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEe
Q 001776 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (1015)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw 803 (1015)
. .-+..+++|+.|.++.+-...........+ -...|.+..+..+..+....+|
T Consensus 298 ---a---------v~~~~l~sgG~d~~l~i~~s~~~~~~~h~~---------------~~~~p~~~~v~~a~~~~L~~~w 350 (691)
T KOG2048|consen 298 ---A---------VIENALISGGRDFTLAICSSREFKNMDHRQ---------------KNLFPASDRVSVAPENRLLVLW 350 (691)
T ss_pred ---e---------eecceEEecceeeEEEEccccccCchhhhc---------------cccccccceeecCccceEEEEe
Confidence 0 012257788888877765544311111110 1112223333333333333444
Q ss_pred eccccCCCCCCceecccCceecCCCCC---------ccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCC
Q 001776 804 KWPRNERNSTGKATTNQAPQLWQPPSG---------ILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF 874 (1015)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~ 874 (1015)
.-.. +.+|...+. .++...++ ....|.+.+.||||+++|.+.-..++||.++.-
T Consensus 351 ~~h~--------------v~lwrlGS~~~~g~~~~~~Llkl~~k---~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~ 413 (691)
T KOG2048|consen 351 KAHG--------------VDLWRLGSVILQGEYNYIHLLKLFTK---EKENISCAAISPDGNLIAISTVSRTKIYRLQPD 413 (691)
T ss_pred cccc--------------ccceeccCcccccccChhhheeeecC---CccceeeeccCCCCCEEEEeeccceEEEEeccC
Confidence 2111 122222111 12222222 466799999999999999999778888887652
Q ss_pred ceeEEe-----CCCCCCeeEEEEcCCCCcEEEEEE-cCCeEEEEEcccce--EEEEEc--CccCCeEEEEEeCCCCEEEE
Q 001776 875 KTMTTF-----MPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRVDE--VKTKLK--GHQKRITGLAFSNTLNVLVS 944 (1015)
Q Consensus 875 ~~~~~l-----~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~vwd~~~~~--~~~~l~--~h~~~v~~l~~spdg~~l~s 944 (1015)
..+... ....-....+.|+- |+..++..+ .+..+.++++++.. .+..+. +-...|..+..||||+|+|+
T Consensus 414 ~~vk~~~v~~~~~~~~~a~~i~fti-d~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa 492 (691)
T KOG2048|consen 414 PNVKVINVDDVPLALLDASAISFTI-DKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAA 492 (691)
T ss_pred cceeEEEeccchhhhccceeeEEEe-cCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEE
Confidence 222221 12233577888888 666666666 77888888887643 222222 34567999999999999999
Q ss_pred EeCCCcEEEEEccCcccccceEEE-ecCCCccccCCceEEEEcc-CCCEEEEE-eCCeEEEEEcC
Q 001776 945 SGADSQLCVWSTDGWEKQASKFLT-IPNGRTASALADTRVQFHL-DQTHLLAV-HETQIAIYEAP 1006 (1015)
Q Consensus 945 ~s~dg~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~-dg~~l~~~-~d~~i~vwd~~ 1006 (1015)
.+.+|.|.+|++++.+.. .+. .+. ..|++++|+| +...|+++ ++++++-||++
T Consensus 493 ~~t~g~I~v~nl~~~~~~---~l~~rln------~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 493 ISTRGQIFVYNLETLESH---LLKVRLN------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred EeccceEEEEEcccceee---cchhccC------cceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 999999999999997633 221 122 3489999995 55556664 99999999993
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=247.88 Aligned_cols=288 Identities=17% Similarity=0.233 Sum_probs=248.0
Q ss_pred CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEE
Q 001776 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1015)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1015)
|...++++. +.++|.++.|+-||+ ++.+++.|.+|++|+...|.++++ +.+|...|..+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~ 65 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDA 65 (307)
T ss_pred cchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceeeec
Confidence 344556666 899999999999999 678889999999999999999987 88999999999
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC--CceEEE
Q 001776 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT--GTKQYI 502 (1015)
Q Consensus 425 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~ 502 (1015)
+.+.|...+++|+.|..|.+||+.+|+..+ .+.+|.+.|+.++|+.+.. .+++|+.|.++++||.++ .++++.
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccch
Confidence 999999999999999999999999999888 7899999999999999988 899999999999999875 467888
Q ss_pred eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 503 ~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
+......|.++.... ..|++|+.||+++.||++.+.....+ -+++|++++|++|++..++++.+. .+++.
T Consensus 141 ldea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~s----tlrLl 210 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDS----TLRLL 210 (307)
T ss_pred hhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccc----eeeec
Confidence 888888999998743 57999999999999999987665544 356899999999999999988754 69999
Q ss_pred eCCCCeeeEEeeCCCCCC-eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 583 NESEGAVKRTYHGLGKRS-VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 583 d~~~~~~~~~~~~~~~~~-i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
|-.+|+++..+.+|.... -...+++....++++|++||.|++||+.....+..+..+. ...+..+.++|.-..++++.
T Consensus 211 Dk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~-~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 211 DKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS-TVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-ceeEEeeecccCccceeEec
Confidence 999999999999997633 2345677777899999999999999999999999888653 23478999999877777665
Q ss_pred CCCcEEEEE
Q 001776 662 NDNGIKILA 670 (1015)
Q Consensus 662 ~dg~i~iw~ 670 (1015)
. +.+..|.
T Consensus 290 ~-~~~~~~~ 297 (307)
T KOG0316|consen 290 G-HGDLFWY 297 (307)
T ss_pred C-Cceecee
Confidence 3 4555664
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=274.59 Aligned_cols=285 Identities=15% Similarity=0.258 Sum_probs=246.4
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~ 496 (1015)
-+..|..|.|.|+|+.|++|+..|.+.+|+..+ +.....+..|+.+|.++.|++++. +++||+.+|.|++|+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---fnFEtilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---FNFETILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCce---eeHHHHhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 346899999999999999999999999999743 222234678999999999999999 899999999999999644
Q ss_pred CceEEEeeCC-CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 497 GTKQYIFEGH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 497 ~~~~~~~~~h-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
..++.+.+| ...|++++|+|.. ..+++++.||+|+|||.........+.+|+-.+.+++|+|....+++++.|.
T Consensus 170 -nnVk~~~ahh~eaIRdlafSpnD--skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-- 244 (464)
T KOG0284|consen 170 -NNVKIIQAHHAEAIRDLAFSPND--SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-- 244 (464)
T ss_pred -hhhHHhhHhhhhhhheeccCCCC--ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--
Confidence 444455554 5999999998743 6899999999999999999988888999999999999999999999998643
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-CC
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EG 654 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~ 654 (1015)
.|++||.+++.++.++.+|.. .|..+.|+|++++|+++|.|..++++|+++.+.+.++++| ...|+++.|+| ..
T Consensus 245 --lVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 245 --LVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE 319 (464)
T ss_pred --eeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccc
Confidence 799999999999999999998 9999999999999999999999999999998888888866 77899999999 66
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCC
Q 001776 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1015)
.+|.+|+.||.|..|.+... ..+.
T Consensus 320 ~lftsgg~Dgsvvh~~v~~~-~p~~------------------------------------------------------- 343 (464)
T KOG0284|consen 320 SLFTSGGSDGSVVHWVVGLE-EPLG------------------------------------------------------- 343 (464)
T ss_pred cceeeccCCCceEEEecccc-cccc-------------------------------------------------------
Confidence 78999999999999987632 1110
Q ss_pred CCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccc
Q 001776 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPR 807 (1015)
Q Consensus 735 ~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~ 807 (1015)
....+|...|.+++|.|=|..|++|+.|.++++|.-.+
T Consensus 344 -----------------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 344 -----------------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred -----------------------------------CCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 11124888999999999999999999999999997554
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=294.21 Aligned_cols=247 Identities=17% Similarity=0.345 Sum_probs=226.7
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCc--------ee--------------------eeeeEEecccCceeE
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--------EL--------------------RNHLEIEAHVGSVND 468 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~--------~~--------------------~~~~~~~~h~~~V~~ 468 (1015)
-...++|..||+|+++||.|..|..|++|.+...+ .+ ....++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 44689999999999999999999999999987311 00 112357899999999
Q ss_pred EEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec
Q 001776 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD 548 (1015)
Q Consensus 469 ~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 548 (1015)
+.|+|+.+ +|++||.|+++|+|.+.+..++..++||..+|+.+.|+|. |-++++++.|++-++|..+.......+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 8999999999999999999999999999999999999754 5899999999999999999988899999
Q ss_pred CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 549 ~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
+|-..+.|+.|+|+..++++++.|. ++++||..+|..++.|.||.. +|.+++|+|+|++|++|+.||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~----tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDR----TVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCCCc----eEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 9999999999999999999997654 799999999999999999988 99999999999999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+++++..+..| .+.|.++.|+.+|..||+|+.|++|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999877 778999999999999999999999999998754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=265.07 Aligned_cols=261 Identities=16% Similarity=0.208 Sum_probs=218.7
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
++..|++.|.-+.||++|++||+++.|.+..||.+.....++...++.+|..+|..+.||||.+ ++++|+.|..+.+|
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW 296 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence 5789999999999999999999999999999999987776777778999999999999999999 89999999999999
Q ss_pred EcCCCceEEEee-CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC-CCCceEEEEECCCCCEEEEEe
Q 001776 493 DAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 493 d~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
|+.+|.+.+.+. +|...+.+++|.|++ ..+++|+.|+++..||++.... ....+ ....|.+++.++||+++++.+
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg--~~~V~Gs~dr~i~~wdlDgn~~-~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG--FRFVTGSPDRTIIMWDLDGNIL-GNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC--ceeEecCCCCcEEEecCCcchh-hcccccccceeEEEEEcCCCcEEEEEe
Confidence 999999988775 346788999997665 7899999999999999985432 22222 234689999999999999988
Q ss_pred eCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001776 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 571 ~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
.|. .|++++.++.........++ ++++++.+.+++++++.-.+..+++||+.....+..+.+|.....+..-+|
T Consensus 374 ~d~----~i~l~~~e~~~dr~lise~~--~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 374 VDK----KIRLYNREARVDRGLISEEQ--PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ccc----ceeeechhhhhhhccccccC--ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 654 59999988766655444443 799999999999999998999999999998888888887755445555566
Q ss_pred cC-CCCEEEEEeCCCcEEEEEccCCceeeeeecCCc
Q 001776 651 NK-EGILLAVSTNDNGIKILANADGIRLLRTVESRT 685 (1015)
Q Consensus 651 s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 685 (1015)
.- +..++++|++|+.|+||+..++ .++..+.||.
T Consensus 448 gg~~~~fiaSGSED~kvyIWhr~sg-kll~~LsGHs 482 (519)
T KOG0293|consen 448 GGGNDKFIASGSEDSKVYIWHRISG-KLLAVLSGHS 482 (519)
T ss_pred CCCCcceEEecCCCceEEEEEccCC-ceeEeecCCc
Confidence 55 5589999999999999999988 6666665543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=278.71 Aligned_cols=283 Identities=24% Similarity=0.410 Sum_probs=250.8
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
.|.++|++++|+|+++ ++++|+.||.|++|++.+++.... +..|...+.++.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCCCCEE
Confidence 4899999999999998 788889999999999998765443 56788999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
++++.+|.|++|++.+++... .+..|...|.++.|++++. ++++++.|+.+++||+.+++....+..|...|.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5778999999999999977 78888889999999999999999999999999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEe
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~ 593 (1015)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++.+ +.+.+||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD----GTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC----CcEEEEECCCCceecch
Confidence 99776 3688888889999999999887777777777899999999999999988753 45999999999888888
Q ss_pred eCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001776 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 594 ~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 670 (1015)
..+.. .+.+++|+|++.++++++.||.|++||+.+++....+..+ ...+.+++|++++..+++++.||.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 8999999999888888888999999999998888888754 56899999999999999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=265.60 Aligned_cols=274 Identities=22% Similarity=0.346 Sum_probs=233.6
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
....|.|+.+..+ .+++|..|++|+|||..+..++.. +.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence 4568999998754 579999999999999998877764 8999999999999 566999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce---EEEeeCCCCCEE
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVY 511 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~h~~~v~ 511 (1015)
+|+.|.+|+|||+++|++++ ++-+|...|..+.|+. . +++|+|.|.++.+||+.+... .+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~n--g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSN--G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeC--C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999888 7788999999999983 3 799999999999999987643 346789999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeE
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~ 591 (1015)
.+.|+ . +++++++.|.+|++|++.+.+.+..+.+|...|.|+.+ .++++++|+. +.+|++||+..|.+++
T Consensus 325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99874 3 69999999999999999999999999999888877766 5778888765 4579999999999999
Q ss_pred EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE-------ecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-------DADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 592 ~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
.+.||.. -|.++.|. .+.+++|+.||+|++||+..+...... ..-.+.+.|..+.|. ...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCC
Confidence 9999997 89999985 578999999999999999876533211 112346678888884 56788999999
Q ss_pred cEEEEEccCC
Q 001776 665 GIKILANADG 674 (1015)
Q Consensus 665 ~i~iw~~~~~ 674 (1015)
+|.|||..++
T Consensus 470 tILiWdFl~~ 479 (499)
T KOG0281|consen 470 TILIWDFLNG 479 (499)
T ss_pred eEEEEEcCCC
Confidence 9999999887
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=240.25 Aligned_cols=242 Identities=17% Similarity=0.322 Sum_probs=205.7
Q ss_pred cccCCCCEEEEEEccC-CCEEEEEECCCeEEEEEccCCceeeeeeEE-ecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~-~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
+.+|.+.|..++|+|- |..||+|+.|..|+||+...+........+ .+|+..|.+++|+|.|+ +|+++|.|.++.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~I 87 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVVI 87 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEEE
Confidence 6889999999999998 999999999999999999865444433333 37999999999999999 8999999999999
Q ss_pred EEcCCC--ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC---ceeeecCCCCceEEEEECCCCCEE
Q 001776 492 WDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSADGARL 566 (1015)
Q Consensus 492 wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l 566 (1015)
|.-..+ +++.+++||...|.+++|+.++ .+|++++.|+.|-+|.++... +...+..|...|..+.|+|....|
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG--~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASG--NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCC--CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 985544 6788999999999999996554 899999999999999988544 345678889999999999999999
Q ss_pred EEEeeCCCCCceEEEEeCC---CCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001776 567 FSCGTNKEGESYLVEWNES---EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~---~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 643 (1015)
++++.|. +|++|+-. ...+++++.+|.. .+.+++|++.|..+++++.|++++||...+ .+. ..+..
T Consensus 166 ~S~SYDn----TIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~-~~~sr 234 (312)
T KOG0645|consen 166 FSCSYDN----TIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLS-GMHSR 234 (312)
T ss_pred EEeccCC----eEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeecc-----Ccc-hhccc
Confidence 9998754 69999766 3468899999987 899999999999999999999999998652 121 13356
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 644 ASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 644 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
.++.+.|. ...|++++.|+.|++|.-.
T Consensus 235 ~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 235 ALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred ceEeeeec--ccceEeccCCCEEEEEEec
Confidence 78889998 5589999999999999654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=261.11 Aligned_cols=293 Identities=18% Similarity=0.259 Sum_probs=253.6
Q ss_pred CCCCCCCCC--CcccccccccCCCCCCCCCCCCCCccccCCCchhhhccCCCCCCCCCCccccCCCChHhHhhcCCCCCC
Q 001776 237 GPFQPTPAA--LPTSLAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGI 314 (1015)
Q Consensus 237 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (1015)
+.|..+..+ +.++|+|+++.+++ .||+||+|+..+ ..|| ..++||..|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgS------vDGFiEVWny~~--GKlr---------KDLkYQAqd------------- 257 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGS------VDGFIEVWNYTT--GKLR---------KDLKYQAQD------------- 257 (508)
T ss_pred eecccccchhheeeCCCCceEeecc------ccceeeeehhcc--chhh---------hhhhhhhhc-------------
Confidence 577777776 89999999999988 899999999998 7776 566666444
Q ss_pred CccccccccceeeeeeCCCCCCCccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeE
Q 001776 315 SDEVNNLSVNILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV 394 (1015)
Q Consensus 315 ~~~v~~~~~~i~~~~~s~~g~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~ 394 (1015)
..+.+..+|.|+.||.|.. ++|+|+.||.|+||.+.+|.+++.
T Consensus 258 ------------------------------------~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~ClRr 300 (508)
T KOG0275|consen 258 ------------------------------------NFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQCLRR 300 (508)
T ss_pred ------------------------------------ceeecccceEEEeecccHH-HhhccCcCCcEEEEEEecchHHHH
Confidence 3455778999999999999 899999999999999999999875
Q ss_pred eeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecC
Q 001776 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474 (1015)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 474 (1015)
+-..|+..|+|+.||.|+..+++++.|.+++|.-+++|++++ ++.+|+.-|+...|++|
T Consensus 301 ------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ft~d 359 (508)
T KOG0275|consen 301 ------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEATFTDD 359 (508)
T ss_pred ------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceEEcCC
Confidence 134899999999999999999999999999999999999888 89999999999999999
Q ss_pred CCceEEEEEeCCCeEEEEEcCCCceEEEeeC--CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec---C
Q 001776 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD---A 549 (1015)
Q Consensus 475 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~---~ 549 (1015)
|. .+++++.||+|++|+.++.+|+.+|+. ...+|+++...|.+. ..++++...+++.+.++.. +....+. .
T Consensus 360 G~--~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~qG-QvVrsfsSGkR 435 (508)
T KOG0275|consen 360 GH--HIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNMQG-QVVRSFSSGKR 435 (508)
T ss_pred CC--eEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEeccc-eEEeeeccCCc
Confidence 99 899999999999999999999998864 456788888777654 6888899999999998763 3333332 2
Q ss_pred CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001776 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1015)
Q Consensus 550 ~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd 626 (1015)
.++...+.+++|.|.++++.+.|+ .++.|...+|+..+++..|.. .+..++.+|..+.+++-++||.+++|.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG~LE~tl~VhEk-dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSGKLERTLPVHEK-DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCc----EEEEEEeecCceeeeeecccc-cccccccCcccchhhhhcccchhhhcC
Confidence 345677888999999999998754 699999999999999999987 677899999999999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-31 Score=268.57 Aligned_cols=258 Identities=18% Similarity=0.252 Sum_probs=223.9
Q ss_pred ccccCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccC-CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEE
Q 001776 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~ 490 (1015)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++.. +.+++ ++.+|..+|.+++|+++|. .++|+|.|+.++
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4789999999999999 899999999999999999987 66666 8999999999999999999 799999999999
Q ss_pred EEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEe
Q 001776 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 491 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
+||+++|+++..|. ....++++.|+|++ .+.+++|+.|+.|+.||+++++....+..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999987 45678899999877 37999999999999999999999999999999999999999999999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---ceeEEEecCCCCCCcce
Q 001776 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV---NLLASIDADGGLQASPC 647 (1015)
Q Consensus 571 ~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~ 647 (1015)
.++ .+++|+.+.+..++.........+.++..+|+++++++-+.|+.|.++.+... .....+.+|.-.+.-..
T Consensus 362 Ddk----s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 362 DDK----SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred cCc----cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 755 59999999887776665555556788999999999999999999999986543 23344555544555678
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeec
Q 001776 648 IRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (1015)
Q Consensus 648 v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1015)
+.|||||.+|++|..||.+.+||..+. +++..+.
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk 471 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK 471 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence 999999999999999999999999876 4444443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=244.56 Aligned_cols=288 Identities=19% Similarity=0.304 Sum_probs=254.4
Q ss_pred eEEEeccCCCeeEEEecc---CCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEE
Q 001776 349 VVMTLNQGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1015)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp---~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1015)
.+..-+|+.+|..++||| +|- +|++++.||.-.+-+-++|.-+.+ +.+|++.|++..
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~ 66 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSAT 66 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeee
Confidence 344556999999999987 554 899999999999999999998876 889999999999
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-ceEEEee
Q 001776 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFE 504 (1015)
Q Consensus 426 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~ 504 (1015)
.+.+....|+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.+ +|++|+.+..++|+|++.. .+..++.
T Consensus 67 l~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 67 LNKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred cCchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhc
Confidence 99999999999999999999999998776 33 3888999999999999 7999999999999999875 4567899
Q ss_pred CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 505 ~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
+|.+.|..+.|.... +.|++.+.|++||+||.+++.....+.. .++++++.++++|++|.++... .|..||.
T Consensus 141 ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs-----sV~Fwda 212 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS-----SVKFWDA 212 (334)
T ss_pred CCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc-----eeEEecc
Confidence 999999999987654 6888889999999999999988887765 5689999999999988876532 4999999
Q ss_pred CCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE-ecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-DADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
.+...++.+.... .|.+.+.+|+...+++|++|+.++.||..+++.+..+ .+ |.++|.|+.|+|+|...++|+.|
T Consensus 213 ksf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkg--h~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 213 KSFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKG--HFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred ccccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeecccC--CCCceEEEEECCCCceeeccCCC
Confidence 9999988887654 5888899999999999999999999999999999886 44 47799999999999999999999
Q ss_pred CcEEEEEccCC
Q 001776 664 NGIKILANADG 674 (1015)
Q Consensus 664 g~i~iw~~~~~ 674 (1015)
|+|++|....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 99999998766
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=235.08 Aligned_cols=249 Identities=18% Similarity=0.275 Sum_probs=221.3
Q ss_pred cccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeE
Q 001776 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
+...+..|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceE
Confidence 344578899999999999999999999999999999999998888 8999999999999999998 79999999999
Q ss_pred EEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC--ceeeecCCCCceEEEEECCCCCEEE
Q 001776 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
.+||+.+|+.++.|.+|.+.|+.+.|+... ..+++|+.|..+++||-+... +++.+......|.++..+ +..|+
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 999999999999999999999999997554 799999999999999988654 455566666678888775 56788
Q ss_pred EEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 647 (1015)
+++.|+ +++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.+|.....-..
T Consensus 160 aGS~DG----tvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykld 232 (307)
T KOG0316|consen 160 AGSVDG----TVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLD 232 (307)
T ss_pred eeccCC----cEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeee
Confidence 887755 6999999999987777665 789999999999999999999999999999999999998876655567
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 648 IRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 648 v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
++++.....+++|++||.+++||+...
T Consensus 233 c~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 233 CCLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eeecccceeEEeccCCceEEEEEeccc
Confidence 788888899999999999999999877
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=258.63 Aligned_cols=276 Identities=17% Similarity=0.338 Sum_probs=227.0
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1015)
.|+++.+ |...+++|..|++|+|||..+..++..+.+| .+.|.|+.|. .+.+++|+.|.+|+|||.+++ ++++
T Consensus 199 gVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GH--tGSVLCLqyd--~rviisGSSDsTvrvWDv~tg-e~l~ 271 (499)
T KOG0281|consen 199 GVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGH--TGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG-EPLN 271 (499)
T ss_pred ceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcC--CCcEEeeecc--ceEEEecCCCceEEEEeccCC-chhh
Confidence 6777766 4568999999999999999999999999877 6678888875 569999999999999999999 6665
Q ss_pred eecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccc
Q 001776 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1015)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~ 759 (1015)
++-+
T Consensus 272 tlih---------------------------------------------------------------------------- 275 (499)
T KOG0281|consen 272 TLIH---------------------------------------------------------------------------- 275 (499)
T ss_pred HHhh----------------------------------------------------------------------------
Confidence 5544
Q ss_pred cCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCC
Q 001776 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839 (1015)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~ 839 (1015)
|...|..+.|+.. ++++++.|.++.+|++..+ +...+...+.|
T Consensus 276 ---------------HceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sp--------------------s~it~rrVLvG 318 (499)
T KOG0281|consen 276 ---------------HCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASP--------------------TDITLRRVLVG 318 (499)
T ss_pred ---------------hcceeEEEEEeCC--EEEEecCCceeEEEeccCc--------------------hHHHHHHHHhh
Confidence 4455666666643 6899999999999987532 22333344666
Q ss_pred CCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce
Q 001776 840 TNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1015)
Q Consensus 840 ~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~ 918 (1015)
|...|..+.| |.+++++++ |.+|++|++.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||++.|.
T Consensus 319 --HrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 319 --HRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred --hhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc---cCeEEEecCCCceEEEEeccccH
Confidence 9999999998 567999998 999999999999999999999999999998 57899999999999999999999
Q ss_pred EEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccc----eEEEecCCCccccCCceEEEEccCCCEEEE
Q 001776 919 VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS----KFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1015)
Q Consensus 919 ~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~----~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1015)
+++.++||..-|.++.| |.+.+++|+.||+|+|||+.++..... .++.....|+ +.|..++|. ...+++
T Consensus 392 cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs---gRVFrLQFD--~fqIvs 464 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS---GRVFRLQFD--EFQIIS 464 (499)
T ss_pred HHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhcc---ceeEEEeec--ceEEEe
Confidence 99999999999999999 578899999999999999998764311 1233333443 779999985 555666
Q ss_pred -EeCCeEEEEEcCCce
Q 001776 995 -VHETQIAIYEAPKLE 1009 (1015)
Q Consensus 995 -~~d~~i~vwd~~~g~ 1009 (1015)
++|.+|.|||..+|.
T Consensus 465 ssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 465 SSHDDTILIWDFLNGP 480 (499)
T ss_pred ccCCCeEEEEEcCCCC
Confidence 599999999997764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=284.67 Aligned_cols=259 Identities=21% Similarity=0.375 Sum_probs=226.4
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
..|...|.++.|++||+++++++.++.+++|+..+.+. .....+.+|...|.+++|+|+++ ++++++.|++|++||+
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeec
Confidence 34578999999999999999999999999999977662 12225689999999999999999 8999999999999999
Q ss_pred -CCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 495 -VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 495 -~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
..+.+++++.+|...|++++|++.+ +++++|+.|++|++||+++++....+..|...|++++|+++++.|++++.|
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g--~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d- 309 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDG--NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD- 309 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCC--CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC-
Confidence 5668999999999999999998766 799999999999999999999999999999999999999999999999654
Q ss_pred CCCceEEEEeCCCCe--eeEEeeCCCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCC-CCcceEE
Q 001776 574 EGESYLVEWNESEGA--VKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL-QASPCIR 649 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~--~~~~~~~~~~~-~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~v~~v~ 649 (1015)
+.|++||+.++. +...+.++... .++.+.|+|++.++++++.|+.+++||+..+..+..+..+... ..+.+..
T Consensus 310 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 ---GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ---ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 469999999999 56788877765 6899999999999999999999999999999999998877543 2344555
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceeeeeecC
Q 001776 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1015)
Q Consensus 650 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1015)
.++.+.++++|+.|+.|++|+..++ ..+..+.+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~ 419 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG 419 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence 6779999999999999999999886 44444433
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=259.99 Aligned_cols=600 Identities=15% Similarity=0.197 Sum_probs=333.2
Q ss_pred EEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 351 ~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
-.+. |++.|+.+.|+|-...|||+|+.|..|+||.+..|-.... .-....+.+..-.|.|+.|+|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeecccC
Confidence 3344 9999999999998888999999999999999974422110 0011124455567899999998
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC-CceEEEeeCCCC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHES 508 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~h~~ 508 (1015)
..-|...+..|.++|||+.+++.+. ++.+|...|.++.|+.||+ ++++.+.|+.|+|||.+. ++.++..++|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7777777788999999999988666 7899999999999999999 899999999999999874 678888888876
Q ss_pred CEEEEeecccCCccEEEEEeCC----CeEEEEeCCCCCce-eeecCC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 509 PVYSICPHHKENIQFIFSTATD----GKIKAWLYDNLGSR-VDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~-~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
. ..-...+.++-..|++.+.+ ..|++||.+..... ..+... ...|.---|.||.++++.++ .++..+..+
T Consensus 215 ~-rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~~l 290 (1012)
T KOG1445|consen 215 M-RDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLFML 290 (1012)
T ss_pred c-hhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEEEE
Confidence 3 33322234544567766654 46899998865442 222221 22455556899999988876 456678888
Q ss_pred eCCCCeee--EEeeCCCCCCeEEEEEeCCCCEEEEEeC-CCc--------------------------------------
Q 001776 583 NESEGAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGD-EFM-------------------------------------- 621 (1015)
Q Consensus 583 d~~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~-dg~-------------------------------------- 621 (1015)
.+....+. ..+...........+.-|....-+..++ +..
T Consensus 291 E~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~ 370 (1012)
T KOG1445|consen 291 EMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGC 370 (1012)
T ss_pred EecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCc
Confidence 77644321 1111000000011111121111111110 000
Q ss_pred -EEEEeCCCCceeEEEecC----CC------------------CCCcceEEEcCCCC-EEEEEeCCC-------------
Q 001776 622 -IKFWDMDNVNLLASIDAD----GG------------------LQASPCIRFNKEGI-LLAVSTNDN------------- 664 (1015)
Q Consensus 622 -i~vwd~~~~~~~~~~~~~----~~------------------~~~v~~v~~s~~~~-~l~~~~~dg------------- 664 (1015)
-.-|=-.+.+.++.+... .| ...|......|... -.-+.+ |+
T Consensus 371 ~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~-~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 371 TAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSS-NNVPDVQEQPAVPKK 449 (1012)
T ss_pred CccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccc-cCCCccccCCCcCcc
Confidence 000100111111111100 00 00000000000000 000000 10
Q ss_pred -cEEEEEccCCceeee---------eecCCccccccccccceec-cccccccccccc---ccccccccccccccccccCC
Q 001776 665 -GIKILANADGIRLLR---------TVESRTFDASRVASAAIVK-APAIGTFGSANA---NVGTSLGERTAPAAAMVGMS 730 (1015)
Q Consensus 665 -~i~iw~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 730 (1015)
.++-.+....+.... .-++.+..+.......++. .|.-.++..... -+.|...+ ..|...-..|.
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~k-svPe~~~~~~g 528 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGK-SVPEQPPVNFG 528 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccc-cCCCCCCcccC
Confidence 000000000000000 0000000000000000000 000000000000 00011110 00000000000
Q ss_pred CCCCCCcccccccccc------cccceeeeeeccccCCcc------eeEeccCCCcCCccEEEEEEcCCCcEEEE--ecc
Q 001776 731 NDSRNFTDVKPKIADE------AVEKSRIWKLTEITEPSQ------CRSLRLPDNLTAMRVSRLIYTNSGLAILA--LAS 796 (1015)
Q Consensus 731 ~~~~~~~~~~~l~~~~------~d~~v~iw~~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~s~dg~~l~~--~~~ 796 (1015)
.. .........+.+ --|.+.-|.-..+..... ++.+.... +-.+=-|..+..++++ ++.
T Consensus 529 ~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~-----PgEsnGfcan~~rvAVPL~g~ 601 (1012)
T KOG1445|consen 529 KP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRL-----PGESNGFCANNKRVAVPLAGS 601 (1012)
T ss_pred CC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccC-----CCccCceeeccceEEEEecCC
Confidence 00 000000000000 001111111111100000 00000000 0011224445555554 566
Q ss_pred CcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEcc-CCCEEEEEc-CCeEEEEeCCCC
Q 001776 797 NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSK-NDSYVMSAS-GGKISLFNMMTF 874 (1015)
Q Consensus 797 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~-dg~~la~~s-dg~i~iwd~~~~ 874 (1015)
.|.|-||++......++|.... ......|+.+.|.| |...||+++ ||.|++|.+..+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~---------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPG---------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccc---------------------cccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 7999999988766655555422 22567899999998 667888888 899999998653
Q ss_pred -------ceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeC
Q 001776 875 -------KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA 947 (1015)
Q Consensus 875 -------~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~ 947 (1015)
+....+.+|...|+++.|+|.-...|++++.|-+|++||+.+++....|.+|++.|.+++|||||+.+|+.+.
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence 3445678899999999999987889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE-E----eCCeEEEEEcCCc
Q 001776 948 DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V----HETQIAIYEAPKL 1008 (1015)
Q Consensus 948 dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~i~vwd~~~g 1008 (1015)
||+|+||+-..++.. +....|.. ...-..+.|.-||+++++ | +..+|.+||..+.
T Consensus 741 Dg~~rVy~Prs~e~p----v~Eg~gpv--gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 741 DGTLRVYEPRSREQP----VYEGKGPV--GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred CceEEEeCCCCCCCc----cccCCCCc--cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 999999999887632 23222222 234457889999999998 4 4567889988654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=266.37 Aligned_cols=247 Identities=24% Similarity=0.395 Sum_probs=219.0
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+.+|.++|++++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.||.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56899999999999999999999999999999999876444 6778999999999999998 799999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+.+++.+..+..|...+.++.|.+. +.++++++.|+.+++||+++.+....+..+...+.+++|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~- 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD- 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC-
Confidence 9998889999999999999999765 4688888889999999999877777777777889999999998888887643
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
+.+.+||+.+++....+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+ ...+.+++|+++
T Consensus 157 ---~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 ---GTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPD 230 (289)
T ss_pred ---CcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCC
Confidence 3599999999988888887765 8999999999999999999999999999998888877654 558999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCC
Q 001776 654 GILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+.++++++.+|.|++|+..++
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc
Confidence 889988888999999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-29 Score=301.59 Aligned_cols=292 Identities=12% Similarity=0.165 Sum_probs=237.0
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (1015)
.|...|++++|+|+|+ ++|+|+.||.|+|||......... ...... ....+...|.+++|++ ++.+
T Consensus 481 ~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~-~~~~~~~~v~~l~~~~~~~~~ 547 (793)
T PLN00181 481 NSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-----------DIHYPV-VELASRSKLSGICWNSYIKSQ 547 (793)
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-----------ccccce-EEecccCceeeEEeccCCCCE
Confidence 3899999999999999 789999999999999764211000 000000 0112356899999987 5789
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEec-CCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.
T Consensus 548 las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 548 VASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 9999999999999999887665 6789999999999997 666 8999999999999999999999888755 6788
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCC-ceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC---
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--- 587 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--- 587 (1015)
++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++.|+ .|++||+..+
T Consensus 622 ~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~----~ikiWd~~~~~~~ 695 (793)
T PLN00181 622 CVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN----TLKLWDLSMSISG 695 (793)
T ss_pred EEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC----EEEEEeCCCCccc
Confidence 888854 456899999999999999998765 355667788899999997 678899887654 6999999743
Q ss_pred ---eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-----------CCCCCCcceEEEcCC
Q 001776 588 ---AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-----------DGGLQASPCIRFNKE 653 (1015)
Q Consensus 588 ---~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~~ 653 (1015)
..+..+.+|.. .+..++|+|++.+|++|+.|+.|++|+......+..+.. ..+...|.+++|+++
T Consensus 696 ~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 696 INETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred cCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 56778888876 788999999999999999999999999876654433221 223456899999999
Q ss_pred CCEEEEEeCCCcEEEEEc
Q 001776 654 GILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~ 671 (1015)
+..|++|+.||.|+||++
T Consensus 775 ~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCeEEEecCCCcEEEEec
Confidence 999999999999999986
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-28 Score=294.57 Aligned_cols=271 Identities=15% Similarity=0.201 Sum_probs=216.7
Q ss_pred CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC----cee
Q 001776 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG----DEL 453 (1015)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~----~~~ 453 (1015)
+|.+++|+....+..... ...-+..|.+.|.+++|+|+|++||+|+.|+.|+||+..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 677888888765443210 01114569999999999999999999999999999997542 111
Q ss_pred e-eeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCe
Q 001776 454 R-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532 (1015)
Q Consensus 454 ~-~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~ 532 (1015)
. ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|...|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 111233 4567999999986433 7999999999999999999999999999999999999863 3479999999999
Q ss_pred EEEEeCCCCCceeeecCCCCceEEEEEC-CCCCEEEEEeeCCCCCceEEEEeCCCCe-eeEEeeCCCCCCeEEEEEeCCC
Q 001776 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 533 i~vwd~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~d~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
|++||+++......+..+ ..+.++.|+ +++.++++++.|+ .|++||++++. ....+.+|.. .|..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg----~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADH----KVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCC----eEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999987776666543 578899995 5789999987644 69999998765 4667777776 89999997 67
Q ss_pred CEEEEEeCCCcEEEEeCCCC------ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 611 NRFLAAGDEFMIKFWDMDNV------NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
..+++++.|+.|++||+..+ ..+..+.+| ...+.+++|++++.+|++|+.|+.|++|+....
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 89999999999999999743 456667655 567889999999999999999999999997654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=228.89 Aligned_cols=234 Identities=13% Similarity=0.217 Sum_probs=202.4
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
.+.||..+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.+|.+.|+|++.+.+.+ .++||+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378999999999999999999999999999999998998777 8999999999999999999 89999999999999
Q ss_pred EcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC-----CCeEEEEeCCC-------CCceeeecCCCCceEEEEEC
Q 001776 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-----DGKIKAWLYDN-------LGSRVDYDAPGHSSTMMAYS 560 (1015)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-----dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~s 560 (1015)
|+++|+++.+++ ...+|..+.|++.+ ++++.+.. .+.|.++|++. .++...+..+...++.+-|.
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999998 56789999997765 45555433 46799999883 34456677778899999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCee-eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001776 561 ADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 561 ~~~~~l~~~~~d~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
|-++.|++|..++ .|.+||.++|.. +.....|.. .|+.+.++++..++++++.|.+-++||..+-+.++++..
T Consensus 157 ~l~~~ii~Ghe~G----~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t- 230 (327)
T KOG0643|consen 157 PLGETIIAGHEDG----SISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT- 230 (327)
T ss_pred ccCCEEEEecCCC----cEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeee-
Confidence 9999999997655 599999999854 444455555 899999999999999999999999999999999998875
Q ss_pred CCCCCcceEEEcCCCCEEEEEeC
Q 001776 640 GGLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~~ 662 (1015)
..+|++.+++|....++.|+.
T Consensus 231 --e~PvN~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 231 --ERPVNTAAISPLLDHVILGGG 251 (327)
T ss_pred --cccccceecccccceEEecCC
Confidence 458999999998777777653
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-29 Score=242.30 Aligned_cols=289 Identities=20% Similarity=0.348 Sum_probs=241.2
Q ss_pred CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEE
Q 001776 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1015)
Q Consensus 346 ~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1015)
+++....+-|.+.|.++... ++ .+.+|++||.++|||..... ... +.||.++|.+++
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~Gk~-~~~-------------------~~Ght~~ik~v~ 151 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLKGKS-IKT-------------------IVGHTGPIKSVA 151 (423)
T ss_pred CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecCCce-EEE-------------------EecCCcceeeeE
Confidence 36777888899999999998 44 67999999999999976543 332 689999999888
Q ss_pred EccCC---CEEEEEECCCeEEEEEccCCceee-eeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC------
Q 001776 426 WSPDG---TLFGVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV------ 495 (1015)
Q Consensus 426 ~spdg---~~las~~~dg~v~iwd~~~~~~~~-~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~------ 495 (1015)
|--.. ..+++++.|.++++|.++.++... ....-.||...|-+++..++|. .+++||.|.++.+|+..
T Consensus 152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~ 229 (423)
T KOG0313|consen 152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE 229 (423)
T ss_pred EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence 86433 369999999999999998775432 1223359999999999999999 79999999999999932
Q ss_pred -------------------CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEE
Q 001776 496 -------------------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 496 -------------------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 556 (1015)
++.++.++.||..+|.++.|.+ . ..+++++.|.+|+.||+.+++....+.. ...+.+
T Consensus 230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNC 305 (423)
T ss_pred ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeec-CcceeE
Confidence 1224567889999999999975 2 5899999999999999999888877665 458899
Q ss_pred EEECCCCCEEEEEeeCCCCCceEEEEeCCCC---eeeEEeeCCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCc-
Q 001776 557 MAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN- 631 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~---~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~- 631 (1015)
+.++|..++|++++.|+ .+++||.+++ .....+.+|.. .|.++.|+|... .|++++.|+++++||+++.+
T Consensus 306 i~~~~~~~Ll~~gssdr----~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ 380 (423)
T KOG0313|consen 306 ISYSPLSKLLASGSSDR----HIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA 380 (423)
T ss_pred eecccccceeeecCCCC----ceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccCCC
Confidence 99999999999998765 5999999876 35678889988 999999999774 56778899999999999887
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
++..+..| .+.|.++.|+. +..+++|+.|++|+|+.-
T Consensus 381 plydI~~h--~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 381 PLYDIAGH--NDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cceeeccC--CceEEEEeccC-CceEEeccCcceEEEecc
Confidence 88888866 77899999984 669999999999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=216.32 Aligned_cols=312 Identities=17% Similarity=0.244 Sum_probs=241.4
Q ss_pred ceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEE
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1015)
...+.++.....|.+++|+|.|. +.|+|+...+.+|.....-..++... ....-.+......-+.|.+.|+|.+|
T Consensus 23 f~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~h----ea~~~pp~v~~kr~khhkgsiyc~~w 97 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAH----EAAKQPPSVLCKRNKHHKGSIYCTAW 97 (350)
T ss_pred eEEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccccc----ccccCCCeEEeeeccccCccEEEEEe
Confidence 35677888999999999999999 88999999999988754322211100 00000111112224679999999999
Q ss_pred ccCCCEEEEEECCCeEEEEEcc--CCceeeeeeEEecccCceeEEEEecC---CCceEEEEEe-CCCeEEEEEcCCCceE
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYH--GGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCG-EDRVIKVWDAVTGTKQ 500 (1015)
Q Consensus 427 spdg~~las~~~dg~v~iwd~~--~~~~~~~~~~~~~h~~~V~~~~~s~~---~~~~~l~s~s-~dg~v~vwd~~~~~~~ 500 (1015)
||+|.+||+|++|.+|++...+ +.+......++.-|.+.|..++|..+ +.. +|++++ .|..|++-|..+|+..
T Consensus 98 s~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 98 SPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred cCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999999997654 33333444468889999999999754 222 566554 5788999999999999
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC--C-----CCceEEEEECCCCCEEEEEeeCC
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--P-----GHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+.+.+|++.|.++- +++ +-++++|+.|.+|++||++-..++..+.. + ...|.+++..|.|+.|+++..|.
T Consensus 177 ~a~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred eeecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 99999999998874 222 36999999999999999998777655432 1 24789999999999999987644
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC--ceeEEEecCCCCCCcceEEEc
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV--NLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~v~~v~~s 651 (1015)
...+||++.+++++.+..|.. .|.++.|+|...++++++.|..|++-|+... ..+..+-...|...+..+.|+
T Consensus 254 ----sc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh 328 (350)
T KOG0641|consen 254 ----SCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWH 328 (350)
T ss_pred ----ceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEec
Confidence 588999999999999999987 8999999999999999999999999998642 112222222446778899999
Q ss_pred CCCCEEEEEeCCCcEEEEEcc
Q 001776 652 KEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 652 ~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
|..--+++.+.|.+..+|-+.
T Consensus 329 ~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 329 PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeeeccCcceEEEeccC
Confidence 998889999999999999753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=248.44 Aligned_cols=284 Identities=20% Similarity=0.280 Sum_probs=240.7
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
+..+.|.+++|||..++=+|+.+. -.+.||+..+...... +..-...|.++.|-.||++|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCCeEE
Confidence 356789999999977654454433 4588999877665442 34456899999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
|+|+..|.|+|+|.++...++ .+.+|+.+|..+.|+|++.. .+++|+.|+.+++||+.+......+.+|+..|.+.
T Consensus 84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 999999999999977654455 67899999999999999887 79999999999999999988777899999999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee-eEE
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRT 592 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~-~~~ 592 (1015)
+++|..+ .++++|+.||.|++||.+........-.|+.+|..+.+-|.|..+++++.+ .+++||+.+|.. +..
T Consensus 160 ~~~~~~~-hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-----~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPAND-HIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-----SVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCC-eEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-----eEEEEEecCCceehhh
Confidence 9987654 799999999999999999886555555688899999999999999998743 499999996654 444
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 593 ~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
...|.. .|+|+++..++..|+++|-|+.|++||+.+.+.+..+.. .++|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 234 ~~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 234 MFNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hhcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEecccceeeeehh
Confidence 444666 999999999999999999999999999999999998876 468999999999999999999998877643
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=231.45 Aligned_cols=290 Identities=17% Similarity=0.284 Sum_probs=245.5
Q ss_pred eeeecCCCCceEEEEECC---CCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC
Q 001776 544 RVDYDAPGHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF 620 (1015)
Q Consensus 544 ~~~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg 620 (1015)
...-.+|..+|..++|+| +|-+|++++.|+. -.+-+-.+|..+.+|.+|.+ .|.+.+...+....++++.|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~----pmlr~g~tgdwigtfeghkg-avw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGK----PMLRNGDTGDWIGTFEGHKG-AVWSATLNKNATRAASAAADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCC----chhccCCCCCcEEeeeccCc-ceeeeecCchhhhhhhhcccc
Confidence 344556777999999975 8889999887553 55667778999999999998 888888888888888899999
Q ss_pred cEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccc
Q 001776 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (1015)
Q Consensus 621 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1015)
+-++||.-+|..+.++.. ..-|.+++|+.|.++|++|+.+..+||||++..+.....+.
T Consensus 82 takvw~a~tgdelhsf~h---khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~------------------ 140 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEH---KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS------------------ 140 (334)
T ss_pred hhhhhhhhhhhhhhhhhh---hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc------------------
Confidence 999999999999988853 45789999999999999999999999999876533332222
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEE
Q 001776 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS 780 (1015)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~ 780 (1015)
+|.+.|.
T Consensus 141 -------------------------------------------------------------------------ghtg~Ir 147 (334)
T KOG0278|consen 141 -------------------------------------------------------------------------GHTGGIR 147 (334)
T ss_pred -------------------------------------------------------------------------CCCCcce
Confidence 3677888
Q ss_pred EEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEE
Q 001776 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 860 (1015)
Q Consensus 781 ~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~ 860 (1015)
.+.|....+.+++++.|++|++||..+ +..+.. +. .+..|+++.+++||++|.+
T Consensus 148 ~v~wc~eD~~iLSSadd~tVRLWD~rT----------------------gt~v~s-L~---~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 148 TVLWCHEDKCILSSADDKTVRLWDHRT----------------------GTEVQS-LE---FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred eEEEeccCceEEeeccCCceEEEEecc----------------------CcEEEE-Ee---cCCCCcceeeccCCCEEEE
Confidence 889999889999999999999987543 332221 11 4678999999999999999
Q ss_pred EcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEE-cCccCCeEEEEEeCCC
Q 001776 861 ASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-KGHQKRITGLAFSNTL 939 (1015)
Q Consensus 861 ~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg 939 (1015)
+..+.|.+||..+...++.+. -...|.+..++| +..++++|++|+.++.||..+|+.+..+ ++|-++|.+|.|||||
T Consensus 202 a~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred ecCceeEEeccccccceeecc-CccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 999999999999999998887 455689999999 7889999999999999999999999886 8999999999999999
Q ss_pred CEEEEEeCCCcEEEEEccCcc
Q 001776 940 NVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 940 ~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
...++||+||+|++|.+..++
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999987765
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=251.24 Aligned_cols=291 Identities=17% Similarity=0.223 Sum_probs=249.2
Q ss_pred CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEE
Q 001776 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1015)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1015)
|......+. |.+.|..+.|-++.. .|++|+.|..|.+|++..++... ..++.|..+.|+.+
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it~~ 225 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNITSI 225 (459)
T ss_pred chhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCccee
Confidence 345555555 999999999999976 58999999999999998776221 11377888999999
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEee
Q 001776 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1015)
Q Consensus 425 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 504 (1015)
.|.++++++++++.|+.+++|++...+... ++.+|.+.|+++.|..... .+++|+.|.+|++||+....|..++.
T Consensus 226 d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 226 DFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred eecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecccc
Confidence 999999999999999999999999977655 7899999999999997776 59999999999999999999888765
Q ss_pred CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 505 ~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
....+..|+... ..+++|-.|+.|++||.+..........++ .|+++..++++..+++++.|. .+.+.|+
T Consensus 301 -~~S~cnDI~~~~----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd----tl~viDl 370 (459)
T KOG0288|consen 301 -PGSQCNDIVCSI----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD----TLKVIDL 370 (459)
T ss_pred -ccccccceEecc----eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC----ceeeeec
Confidence 344466666542 578999999999999999988888877755 999999999999999987643 6999999
Q ss_pred CCCeeeEEeeCCC---CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 585 SEGAVKRTYHGLG---KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 585 ~~~~~~~~~~~~~---~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
++......+.... ....+.+.|||++.|+++||.||.|+||++.++++...+........|++++|+|.|..+++++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 9998888876542 2246789999999999999999999999999999999998766555799999999999999999
Q ss_pred CCCcEEEE
Q 001776 662 NDNGIKIL 669 (1015)
Q Consensus 662 ~dg~i~iw 669 (1015)
.++.+.+|
T Consensus 451 k~~~v~lW 458 (459)
T KOG0288|consen 451 KQKAVTLW 458 (459)
T ss_pred CCcceEec
Confidence 99999998
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=229.76 Aligned_cols=308 Identities=16% Similarity=0.202 Sum_probs=238.2
Q ss_pred EEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEe-EeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIA-VKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
..-.|.+++.+.+|||||. ++|+|+.|..|+|.|++.---.. .+.+..-+... ......++..|.+.|+++.|+|.
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa--~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQA--RHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCccc--CCceEeehhhccCcccceeecch
Confidence 3445999999999999999 89999999999999986210000 00000000000 01112247899999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe---eCC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---EGH 506 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---~~h 506 (1015)
...|++|+.|++|+++|.......+.+..+ ....+|.++.|+|.|. +++.|..-.++++||+.+-++...- ..|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999764433322222 2456899999999999 8999999999999999988776533 468
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec-CC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-AP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
++.|+++.+++. +++.++++.||.|++||--...++..+. .| +..|.+..|..+|+++++.+.| ..+++|.+
T Consensus 261 t~ai~~V~Ys~t--~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D----S~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRYSST--GSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKD----STVKLWEI 334 (430)
T ss_pred ccceeEEEecCC--ccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCc----ceeeeeee
Confidence 999999988654 4899999999999999987777766543 23 3489999999999999998864 47999999
Q ss_pred CCCeeeEEeeCCCCC----CeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001776 585 SEGAVKRTYHGLGKR----SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1015)
Q Consensus 585 ~~~~~~~~~~~~~~~----~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 659 (1015)
.+++++..+.+.... .-+...|+....+++.-. ..+.+.-||.+++..+..+.. +|.+.+..+.-+|.+.-+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCCCceee
Confidence 999999999876221 122345666667777665 567899999999887776654 56789999999999999999
Q ss_pred EeCCCcEEEEEc
Q 001776 660 STNDNGIKILAN 671 (1015)
Q Consensus 660 ~~~dg~i~iw~~ 671 (1015)
+++|..+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999964
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=272.53 Aligned_cols=306 Identities=19% Similarity=0.269 Sum_probs=248.6
Q ss_pred cCCCeeEEEeccCCCeEEEEEe--cCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (1015)
++..|.+++.+|||. .+|||+ .||.++||+.+.--.- ...++.. .+...-....|.+.|+|+.|+|||++
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 445689999999999 689999 8999999997542100 0011111 12222236789999999999999999
Q ss_pred EEEEECCCeEEEEEccC----------C-----ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 433 FGVAYSKHIVHLYTYHG----------G-----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~----------~-----~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
||+|+.|+.|.||+... | +..+....+.+|...|..++|+|++. ++++++.|++|.+||..+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999873 0 11234557899999999999999999 8999999999999999999
Q ss_pred ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC------CCceEEEEECCCCCEEEEEee
Q 001776 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP------GHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 498 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
+.+..+.+|.+.|..+.|.|.+ +++++-+.|++|++|+..+.+.......+ ...+..+.|||||.+|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999996655 89999999999999997765554443332 225788999999999999876
Q ss_pred CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCC-----CC------------EEEEEeCCCcEEEEeCCCCceeE
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KN------------RFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~-----~~------------~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
-..+...+.|.+-.+.+.-..+-||.. ++.++.|+|. .. .+++|+.|+.|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 556677899999888888899999998 9999999873 11 57788899999999998888776
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.+..-. ...|..++|+|||..|+.++.||+|.++.++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 654322 457899999999999999999999999998754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=227.05 Aligned_cols=289 Identities=12% Similarity=0.144 Sum_probs=240.9
Q ss_pred EEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 350 ~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
+...+|..+++-+.++.+|. ||.+++.|.++.||-..+|+.+.+ +.||++.|+|+..+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence 44556999999999999999 899999999999999999999886 8999999999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-----CCCeEEEEEcC-------CC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAV-------TG 497 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-----~dg~v~vwd~~-------~~ 497 (1015)
.+++++|+.|.++++||+++|+++.. +. -..+|..+.|+++|+ +++.+. ..+.|.++|++ ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~k-~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---WK-TNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---ee-cCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998763 32 567899999999998 444433 34689999988 44
Q ss_pred ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCcee-eecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 498 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
++...+..+...++.+.|.+.+ +.|++|..||.|..||++++.... ....|...|+.+.+++|..++++++.|.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt--- 212 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT--- 212 (327)
T ss_pred CceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc---
Confidence 5677888888999999997765 799999999999999999876544 4467888999999999999999998754
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc--EE------------EEeCCCCceeEEEecCCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM--IK------------FWDMDNVNLLASIDADGGL 642 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~--i~------------vwd~~~~~~~~~~~~~~~~ 642 (1015)
+-++||..+-+.++++.... ++++.+++|...+++.||.... |. +|++-..+.+..+++| .
T Consensus 213 -takl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--F 287 (327)
T KOG0643|consen 213 -TAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--F 287 (327)
T ss_pred -cceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--c
Confidence 58999999999999998765 8999999998888888764322 22 2222222344555555 7
Q ss_pred CCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 643 QASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 643 ~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
++|++++|+|+|+..++|+.||.|++...+..
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 79999999999999999999999999876543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-27 Score=217.63 Aligned_cols=276 Identities=17% Similarity=0.237 Sum_probs=236.5
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCC
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGT 431 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~ 431 (1015)
.+|...|.+++|+-+|. -|++|+.|+++.+|+++..+.+.. ....+|.+.|-.++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 34888999999999999 679999999999999988754432 23678999999999998 677
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
.+++++.|.+|++||+..+++... .... +.=.-+.|+|+|. +++.++.|..|...|.++.+.....+ ....+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~---i~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTAR---IETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEE---eecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 999999999999999999987763 3323 3334589999999 89999999999999999888777655 445577
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeE
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~ 591 (1015)
.++|+.++ ++++.....|+|.|......+.+..+..|.....++.|+|+|+++++|+.|. .+.+||+..--+++
T Consensus 152 e~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA----lvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA----LVSLWDVDELICER 225 (313)
T ss_pred eeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc----eeeccChhHhhhhe
Confidence 78887544 5777777779999999998899999999999999999999999999998754 69999999998999
Q ss_pred EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 592 ~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
.+..+.- +|+.+.|+.+|++|+++++|..|-|=++.+|..+..++.. ++...|+|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---GPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---CCceeEEecCCCceeeEEecC
Confidence 8888775 9999999999999999999999999999999999998764 466899999999999988755
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-28 Score=228.93 Aligned_cols=293 Identities=17% Similarity=0.269 Sum_probs=236.6
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccC------------Cc---eeeeeeEEecccCceeEEEEecCCCc
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------------GD---ELRNHLEIEAHVGSVNDLAFSYPNKQ 477 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~------------~~---~~~~~~~~~~h~~~V~~~~~s~~~~~ 477 (1015)
.+..|++++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.++-.|...|+++.|+|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 3678999999999999999999999999999999871 11 1112346778999999999999999
Q ss_pred eEEEEEeCCCeEEEEEcCCCceEEEe--eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeee---cCCCC
Q 001776 478 LSVVTCGEDRVIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGH 552 (1015)
Q Consensus 478 ~~l~s~s~dg~v~vwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~ 552 (1015)
.|++|+.|++|+++|.......+.+ -....+|.++.|+|.+ .+++.|....++++||+.+.++...- ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG--efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG--EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC--ceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 8999999999999998754332222 2246789999998776 69999999999999999987775543 34566
Q ss_pred ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEee-CCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001776 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 553 ~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
.|+++.+++.++..++++.||. |++||--+++++.++. .|.+..|++..|..+|+++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~----IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGA----IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEeccCCc----EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999988664 9999999999998885 4555679999999999999999999999999999999
Q ss_pred eeEEEecCCCC---CCcceEEEcCCCCEEEEEe-CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccc
Q 001776 632 LLASIDADGGL---QASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGS 707 (1015)
Q Consensus 632 ~~~~~~~~~~~---~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1015)
++..+.+.+.. ..-+...|+....+++.-. ..+.+.-||.+++.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad-------------------------------- 386 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD-------------------------------- 386 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchh--------------------------------
Confidence 99999875322 2234566777776666544 44677788877652
Q ss_pred cccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCC
Q 001776 708 ANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS 787 (1015)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d 787 (1015)
.+.+|.+ +|++.++.+.-||.
T Consensus 387 ------------------------------------------r~~l~sl-----------------gHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 387 ------------------------------------------RVALLSL-----------------GHNGAVRWIVHSPV 407 (430)
T ss_pred ------------------------------------------hhhhccc-----------------CCCCCceEEEeCCC
Confidence 2223333 38899999999999
Q ss_pred CcEEEEeccCcEEEEee
Q 001776 788 GLAILALASNAVHKLWK 804 (1015)
Q Consensus 788 g~~l~~~~~dg~i~vw~ 804 (1015)
+..+++++.|..+++|-
T Consensus 408 ~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCceeeecccceeeeee
Confidence 99999999999999994
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=224.41 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=220.3
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCc-ceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
..+.|.+++|||....+++.|+-||+||+|+++.. .... .....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 45789999999977668889999999999999873 3221 2256799999999999999999
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+|||.|++|+.||.++..++.++. -...++++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998643 46789999999999887665589999999999999999999998887 45667777
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeeec--CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC--ee
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD--APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG--AV 589 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--~~ 589 (1015)
..-. .+++++..++.|.+|++++........ .-...+++++..+|....+.|+.. +++.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE----Grv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE----GRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec----ceEEEEecCCCCccC
Confidence 5422 488999999999999997655443321 123378899999988888888763 35667666655 55
Q ss_pred eEEeeCCCC--------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001776 590 KRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 590 ~~~~~~~~~--------~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
-..|+.|.. ..|.+|+|+|.-..|+++|.||++.+||-.....+...+.+ ..+|+|.+|+.+|.++|-+
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence 556666652 23667899999999999999999999998887777776655 7799999999999988855
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=222.07 Aligned_cols=284 Identities=17% Similarity=0.268 Sum_probs=227.3
Q ss_pred eEEEecc--CCCeEEEEEe-----cCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC-CC
Q 001776 360 KSMDFHP--VQQILLVVGT-----NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GT 431 (1015)
Q Consensus 360 ~~~~~sp--~g~~lla~g~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~ 431 (1015)
.++.||| .++..+|++. ..|.+.|-++..++-+.. +. -..-.+.+..++|+++ .+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 4677888 3443344432 357899999864443332 11 1224578999999994 56
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
.+++++.||++++||+... -.++..++.|...|.++.|++..++ .++++|.|++|++|+...++.+++|.+|...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 8889999999999995432 2344478899999999999998776 677889999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCE-EEEEeeCCCCCceEEEEeCCCC-ee
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEG-AV 589 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~d~~~~~~i~iwd~~~~-~~ 589 (1015)
...|+|... +++++++.|+++++||++..+....+..|..++.++.|+.-... +++++. ++.|+.||++.- .+
T Consensus 152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 999998765 69999999999999999998888888889999999999986554 555544 557999999875 56
Q ss_pred eEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcE
Q 001776 590 KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGI 666 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 666 (1015)
+..+.+|.- .|+.+.|+|.. ..|++++.|-+++|||...+ ..+.+...| ..-+..+.|++ ++.++|+.+.|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccce
Confidence 777877776 89999999976 67888999999999999854 345555544 66788899998 77899999999999
Q ss_pred EEEEc
Q 001776 667 KILAN 671 (1015)
Q Consensus 667 ~iw~~ 671 (1015)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=254.92 Aligned_cols=250 Identities=16% Similarity=0.260 Sum_probs=209.5
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC----------------------------ce--------------
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG----------------------------DE-------------- 452 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~----------------------------~~-------------- 452 (1015)
..|.+.|.++.||+||+|||+||.|+.|+||.+... ..
T Consensus 264 ~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred cccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 389999999999999999999999999999987650 00
Q ss_pred ---------------eeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecc
Q 001776 453 ---------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1015)
Q Consensus 453 ---------------~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 517 (1015)
-+++..+.||.+.|.++.||.++ +|+++|.|.+|++|++....|+..|. |...|+|++|+|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 01123567999999999999766 69999999999999999999999998 999999999999
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCC-
Q 001776 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL- 596 (1015)
Q Consensus 518 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~- 596 (1015)
..+ +++++|+.||.++||++...+....... ..-|++++|.|||+..++|+.+| ..++|+....+....+.-+
T Consensus 420 vDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G----~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 420 VDD-RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNG----YCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred cCC-CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEecc----EEEEEEccCCeEEEeeeEee
Confidence 776 7999999999999999986555544444 36899999999999999998865 5999999877766554322
Q ss_pred ------CCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001776 597 ------GKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1015)
Q Consensus 597 ------~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 669 (1015)
....|+.+.|.|.. ..+++.+.|..|+|+|.++.+++..+++......-....|+.||++|+++++|..|++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 12269999998755 45888899999999999999999999876555555678999999999999999999999
Q ss_pred EccCC
Q 001776 670 ANADG 674 (1015)
Q Consensus 670 ~~~~~ 674 (1015)
+....
T Consensus 574 ~~~~~ 578 (712)
T KOG0283|consen 574 KNDSF 578 (712)
T ss_pred eCCCC
Confidence 98543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=255.22 Aligned_cols=287 Identities=12% Similarity=0.097 Sum_probs=223.0
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCc-cccccccccCCCCEEEEEEcc-CCCEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM-PLQASLSSDYTASVNRVMWSP-DGTLF 433 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp-dg~~l 433 (1015)
-..|.....++++. .+++++.+.....|+...+..+. .....+. ......+.+|.+.|++++|+| ++++|
T Consensus 20 ~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~-------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L 91 (493)
T PTZ00421 20 FLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL-------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL 91 (493)
T ss_pred eeccccccccCCCC-CcEeECCceEEEEEecCCceEEe-------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence 34566777778866 45777778888889876654221 1111111 111234789999999999999 89999
Q ss_pred EEEECCCeEEEEEccCCcee----eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCC
Q 001776 434 GVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~----~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~ 509 (1015)
|+|+.|++|++||+.++... .....+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++.+..+.+|...
T Consensus 92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 99999999999999865321 223468899999999999998644 7999999999999999999999999999999
Q ss_pred EEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCc-eEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 510 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
|.+++|+++ |.+|++++.|+.|++||++++.....+..|.+. ...+.|.+++..+++++.++..++.|++||+++..
T Consensus 171 V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 171 ITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred eEEEEEECC--CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999765 479999999999999999998877777777653 45678999999999887665567789999998754
Q ss_pred -eeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001776 589 -VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 589 -~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+...... ...++..++|.|..
T Consensus 249 ~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 249 SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKW 315 (493)
T ss_pred CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEecccc
Confidence 33334434433566678999999999988 6999999999999887766542 34567889998853
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-27 Score=216.78 Aligned_cols=249 Identities=16% Similarity=0.218 Sum_probs=212.5
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+.+|...|.+++|+.+|..||+|+.|+++.+|+++..+.. ......+|.+.|-.++|+|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 6789999999999999999999999999999999987533 33357799999999999998877 799999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
++++++........+.+. ++|+| +|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998886666665 55654 447999999999999999987665544433 33677888987777766553
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
|.+.|.|.....-+++..+..|.. ...+|.|+|+|+++++|+.|..+.+||+...-++..+... .-+|..+.|+.|
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl--dwpVRTlSFS~d 242 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL--DWPVRTLSFSHD 242 (313)
T ss_pred -CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc--cCceEEEEeccC
Confidence 345799988889999999999997 7889999999999999999999999999988888888755 568999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCc
Q 001776 654 GILLAVSTNDNGIKILANADGI 675 (1015)
Q Consensus 654 ~~~l~~~~~dg~i~iw~~~~~~ 675 (1015)
|++||++++|..|-|=++++|.
T Consensus 243 g~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred cceeeccCccceEEeEecccCC
Confidence 9999999999999998888873
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-26 Score=217.99 Aligned_cols=282 Identities=15% Similarity=0.255 Sum_probs=232.3
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
..+.|.++.|+++|. ++++++.|.+++|||..+++++.+ +..++-.|..++|......++
T Consensus 13 ~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 367899999999999 667789999999999999998876 455667888999988888777
Q ss_pred EEEC--CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEE
Q 001776 435 VAYS--KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 435 s~~~--dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
.++. |.+|+..++.+.+.++ -+.||...|+.++.+|-+. .+++++.|++|++||++..++...+.....+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999998887 7999999999999999998 89999999999999999888887776555555
Q ss_pred EeecccCCccEEEEEeCCCeEEEEeCCCCC--ceeeecC---CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLG--SRVDYDA---PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
++|. +.|-+++++...+.|++||++... +-..+.. ...+.+.+.|+|||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfD--p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFD--PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeEC--CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 4554 445677777777799999998753 2223322 2457899999999999998864 446999999999
Q ss_pred eeeEEeeCCCCCC--eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001776 588 AVKRTYHGLGKRS--VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1015)
Q Consensus 588 ~~~~~~~~~~~~~--i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 665 (1015)
....++.++.... -...+|+||++++++|+.||+|.+|+++++..+..+.+. +..++.++.|+|.-.+++++ +..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa--~s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSA--SSN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeec--Cce
Confidence 9999988876532 245789999999999999999999999999999999874 35688999999987777765 557
Q ss_pred EEEEEcc
Q 001776 666 IKILANA 672 (1015)
Q Consensus 666 i~iw~~~ 672 (1015)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 8888654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=256.04 Aligned_cols=283 Identities=17% Similarity=0.293 Sum_probs=247.6
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
+...+.+..|. ++ .+++|+.|++|++||..++..+.. .+.||.+.|.++++..-+.+|+
T Consensus 207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv 265 (537)
T KOG0274|consen 207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV 265 (537)
T ss_pred Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence 67789999999 33 579999999999999999887653 2689999999999998899999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+|+.|.+++|||..+|++.. .+.+|...|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus 266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 99999999999999999888 88899999999987633 689999999999999999999999999999999998
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC-eeeEEe
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTY 593 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~ 593 (1015)
.+ +.++++|+.|++|++||+.+.+....+.+|...|.++.+.+. ..+++++.|+ .|++||+.+. +++.++
T Consensus 339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~----~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT----TIKVWDLRTKRKCIHTL 409 (537)
T ss_pred ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc----ceEeecCCchhhhhhhh
Confidence 75 369999999999999999999999999999999999988776 8999998865 5999999999 999999
Q ss_pred eCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001776 594 HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 594 ~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
.+|.. .+..+ ...++++++++.|++|++||..+++++..+... +...|..+++. ...+++++.||.+++||+.+
T Consensus 410 ~~h~~-~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 410 QGHTS-LVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRS 483 (537)
T ss_pred cCCcc-ccccc--ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence 99886 55443 345789999999999999999999999999874 34567777665 46788899999999999999
Q ss_pred Cceeeeee
Q 001776 674 GIRLLRTV 681 (1015)
Q Consensus 674 ~~~~~~~~ 681 (1015)
+ ...+.+
T Consensus 484 ~-~~~~~l 490 (537)
T KOG0274|consen 484 G-TLIRTL 490 (537)
T ss_pred C-chhhhh
Confidence 8 444433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=211.13 Aligned_cols=248 Identities=14% Similarity=0.205 Sum_probs=209.5
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC--CCeEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKV 491 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~--dg~v~v 491 (1015)
+..-.+.|+++.|+++|.+|++++.|.++++||..+|+.++ ++..+.-.|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 55567899999999999999999999999999999998877 6777888899999998877 4565555 889999
Q ss_pred EEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEee
Q 001776 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
-++.+.+.++.|.||...|++++.+|.+ ..+++++.|++|++||++..++...+.....+ .++|.|.|-.++++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 9999999999999999999999998876 68999999999999999987777666554444 4789999998888763
Q ss_pred CCCCCceEEEEeCCCC--eeeEEeeCC--CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc-c
Q 001776 572 NKEGESYLVEWNESEG--AVKRTYHGL--GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS-P 646 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~--~~~~~~~~~--~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v-~ 646 (1015)
...|++||++.- .+..++.-. .......+.|+|||++++.+...+.+++.|.-+|..+..+..+.....+ -
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 226999999863 344444332 2336888999999999999999999999999999999998876444322 4
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 647 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
..+|+||++++++|++||+|.+|+++++
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence 7889999999999999999999999988
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=242.23 Aligned_cols=278 Identities=18% Similarity=0.270 Sum_probs=237.2
Q ss_pred eEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECC
Q 001776 360 KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 439 (1015)
Q Consensus 360 ~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 439 (1015)
.-++|+..+ +||+|. ...|++|+..+++.... ..-+...|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 356788554 456653 35799999999885543 22237899999999999999999999
Q ss_pred CeEEEEEccCCceeeeeeEEec-ccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEE-eeCCCCCEEEEeecc
Q 001776 440 HIVHLYTYHGGDELRNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHH 517 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~-h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~h~~~v~~i~~~~ 517 (1015)
|.|.|||..+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999877666 6777 99999999998 44 689999999999999998776655 889999999999976
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCC-CCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCC
Q 001776 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1015)
Q Consensus 518 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~ 596 (1015)
+. .++++|+.|+.+.|||.........+..|...|..++|+|- ...|++|+. ..+..|++||..+++.+......
T Consensus 312 d~--~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 DG--NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred CC--CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 55 79999999999999999888889999999999999999995 456666654 55788999999999998887665
Q ss_pred CCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 597 GKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 597 ~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
. .|+.+.|++..+.|+++- .++.|.||+..+.+.+..+.+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 799999999997777754 6779999999999999999877 778999999999999999999999999998764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=229.79 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=232.4
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEec----cCCCccccccccccCCCCEEEEEEcc
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWEL----GACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1015)
-.|.-+|+||+++|+++ ..++++.||+|.-|++.+|+.... +|.- .....+.+..- .+|...|.+++.|+
T Consensus 139 ~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~ 212 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSS 212 (479)
T ss_pred ccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcC
Confidence 34999999999999999 679999999999999999985522 1111 10112222222 48999999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCC
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~ 508 (1015)
||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++....+.++.+|+.
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd 287 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQD 287 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCcc
Confidence 99999999999999999999998777 6899999999999987666 689999999999999999999999999999
Q ss_pred CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
.|.+|...... +.+.+|+.|+++++|++. ......+.++...+-|++|-.+ ..+++|+.+| .|.+|++.+.+
T Consensus 288 ~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~-~HfvsGSdnG----~IaLWs~~KKk 359 (479)
T KOG0299|consen 288 GVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIND-EHFVSGSDNG----SIALWSLLKKK 359 (479)
T ss_pred ceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecc-cceeeccCCc----eEEEeeecccC
Confidence 99999765433 566666799999999994 4566677778889999999765 4678887655 59999999988
Q ss_pred eeEEeeCCCC-----------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEecCCCCCCcceEEEcCC
Q 001776 589 VKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 589 ~~~~~~~~~~-----------~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
++.+....+. ..|++++..|....+++|+.+|.|++|-+..+ +++..+.. .+.|++++|+++
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~s 436 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNS 436 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccC
Confidence 8776643221 16889999999999999999999999998877 45555543 467999999999
Q ss_pred CCEEEEE
Q 001776 654 GILLAVS 660 (1015)
Q Consensus 654 ~~~l~~~ 660 (1015)
|+.+++|
T Consensus 437 gk~ivag 443 (479)
T KOG0299|consen 437 GKRIVAG 443 (479)
T ss_pred CCEEEEe
Confidence 9966665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=233.53 Aligned_cols=253 Identities=17% Similarity=0.254 Sum_probs=213.8
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.+-.++|+.+.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 67899999999999999999999999999999998776 223347888889999999999999 799999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+.+.+...++.+|+..|+++.|.... ..+++|+.|.+|+.||+....+..... ....+..++.+ ...++++..|+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccccc
Confidence 99999999999999999999986554 349999999999999999765554432 34455666665 44566665544
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC--CCCCcceEEEc
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG--GLQASPCIRFN 651 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~v~~v~~s 651 (1015)
.|+.||.+++.+......+. .|+++..++++..+.+++.|.++.+.|+++.+....+...+ ....++.+.||
T Consensus 323 ----kvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 323 ----KVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ----ceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC
Confidence 59999999999998888765 79999999999999999999999999999998888876542 22347899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 652 KEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 652 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
|++.++++|+.||.|+||++.++ ++...+
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tg-KlE~~l 425 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTG-KLEKVL 425 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCc-eEEEEe
Confidence 99999999999999999999988 444433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=223.39 Aligned_cols=306 Identities=14% Similarity=0.231 Sum_probs=231.5
Q ss_pred CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC---CEEEEEeCCCcEEEE
Q 001776 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAGDEFMIKFW 625 (1015)
Q Consensus 549 ~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~---~~l~~~~~dg~i~vw 625 (1015)
.|..+|.++... +++|++++.|+ .+++||. .|+....+.+|.+ ++.++++.-.. ..+++++.|.++++|
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg----~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDG----TSRIWDL-KGKSIKTIVGHTG-PIKSVAWVIKNSSSCLFVSASMDQTLRLW 174 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCC----eeEEEec-CCceEEEEecCCc-ceeeeEEEecCCccceEEEecCCceEEEE
Confidence 356678777776 78999999866 5999996 5888899999987 78766664333 359999999999999
Q ss_pred eCCCCceeEEEe--cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccc
Q 001776 626 DMDNVNLLASID--ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703 (1015)
Q Consensus 626 d~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1015)
-.+.++...... ..+|...|-++...++|..+++|+.|.+|.||+..+. ....++.....-.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~--~~~~~E~~s~~rr-------------- 238 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD--EEDELESSSNRRR-------------- 238 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC--ccccccccchhhh--------------
Confidence 988776443322 1256889999999999999999999999999994332 1111111110000
Q ss_pred cccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEE
Q 001776 704 TFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLI 783 (1015)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 783 (1015)
.... .. .....+.......+|..+|.++.
T Consensus 239 ------------k~~~-------------------------------------~~--~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 239 ------------KKQK-------------------------------------RE--KEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred ------------hhhh-------------------------------------hh--hcccccCceEEecccccceeeEE
Confidence 0000 00 00000000111136999999999
Q ss_pred EcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-
Q 001776 784 YTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (1015)
Q Consensus 784 ~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s- 862 (1015)
|++ ...+.+++.|.+|+.||+.. +....... ......++.++|..++||+|+
T Consensus 268 w~d-~~v~yS~SwDHTIk~WDlet----------------------g~~~~~~~----~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 268 WSD-ATVIYSVSWDHTIKVWDLET----------------------GGLKSTLT----TNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred EcC-CCceEeecccceEEEEEeec----------------------ccceeeee----cCcceeEeecccccceeeecCC
Confidence 999 56799999999999997653 33222211 467789999999999999999
Q ss_pred CCeEEEEeCCCCc---eeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce-EEEEEcCccCCeEEEEEeCC
Q 001776 863 GGKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE-VKTKLKGHQKRITGLAFSNT 938 (1015)
Q Consensus 863 dg~i~iwd~~~~~---~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~-~~~~l~~h~~~v~~l~~spd 938 (1015)
|..+++||.+++. ...+|.+|...|.++.|+|.+...|++|+.|+++++||+++.+ ++..+.+|.+.|.++.|. +
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~ 399 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-E 399 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-C
Confidence 9999999998754 4567899999999999999888889999999999999999876 899999999999999998 6
Q ss_pred CCEEEEEeCCCcEEEEEcc
Q 001776 939 LNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 939 g~~l~s~s~dg~v~vWd~~ 957 (1015)
+.++++|+.|.+|+++.-.
T Consensus 400 ~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 400 GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CceEEeccCcceEEEeccc
Confidence 7799999999999998754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=213.40 Aligned_cols=252 Identities=13% Similarity=0.219 Sum_probs=207.0
Q ss_pred eeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
.....+.-.+.+..++|+++....+++++.||+++|||...... +...++.|...|.++.|+
T Consensus 52 ~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 52 QECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWN 113 (311)
T ss_pred EEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccc
Confidence 44555667889999999999988999999999999999543221 111378999999999999
Q ss_pred c-CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC
Q 001776 428 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 428 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h 506 (1015)
+ ++..+++++-|++|++|+...++.+. ++.+|...|...+|+|...+ +++++|.|+++++||++.......+..|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEec
Confidence 9 66778888999999999998877666 79999999999999998877 7999999999999999865544558999
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCCceEEEEECCCCC-EEEEEeeCCCCCceEEEEeC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd~ 584 (1015)
...|.++.|+.... ..+++|+.|+.|++||+++.+. +..+.+|+-.|+.++|||... .|++++. +-++++||.
T Consensus 190 ~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~ 264 (311)
T KOG0277|consen 190 NSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDP 264 (311)
T ss_pred cceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEeccc
Confidence 99999999976544 7999999999999999997654 556788888999999999754 5666665 447999999
Q ss_pred CCCe-eeEEeeCCCCCCeEEEEEeCC-CCEEEEEeCCCcEEEEeC
Q 001776 585 SEGA-VKRTYHGLGKRSVGVVQFDTT-KNRFLAAGDEFMIKFWDM 627 (1015)
Q Consensus 585 ~~~~-~~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~dg~i~vwd~ 627 (1015)
..+. .+.++..|. +-+..+.|++. ..++++++-|+.++||+.
T Consensus 265 ~~~ds~~e~~~~Ht-EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHT-EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccc-eEEeccccccccCceeeecccccceeeecc
Confidence 8654 444455444 47888888874 578999999999999984
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=241.51 Aligned_cols=263 Identities=16% Similarity=0.281 Sum_probs=226.6
Q ss_pred CCccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccc
Q 001776 336 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS 415 (1015)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (1015)
.+..|+.....-..+..++ ...|+++.|+++|. .||+|..+|.|.|||..+.+.+.. +.
T Consensus 198 ~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~ 256 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFG-EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LR 256 (484)
T ss_pred eEEEEecCCCceEEeEecC-CCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------cc
Confidence 4555555554434444444 89999999999999 789999999999999988877765 55
Q ss_pred c-CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 416 D-YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 416 ~-h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
+ |...|-+++|+ +..+.+|+.|+.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.|||.
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDG 330 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccC
Confidence 6 99999999998 78899999999999999998876553 3789999999999999999 8999999999999999
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEe--CCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA--TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
.....+..+..|.+.|.+++|+|... .+||+|+ .|++|++||..++..+.... .+..|.++.|++..+-|+++...
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC
Confidence 88889999999999999999999877 4888864 69999999999766655544 46799999999999888877643
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV 630 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~ 630 (1015)
. +..|.+|+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s--~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 S--ENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--CCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 3 55799999999999999999998 7999999999999999999999999998765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-25 Score=244.43 Aligned_cols=256 Identities=10% Similarity=0.117 Sum_probs=196.7
Q ss_pred EecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC-CCEEEEEECCCeEEEEEccCCce-
Q 001776 375 GTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE- 452 (1015)
Q Consensus 375 g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~- 452 (1015)
|+.+|.|++|+......+.. +.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~-------------------L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIK-------------------LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceEEE-------------------EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 45567777777665443332 6899999999999996 89999999999999999986432
Q ss_pred e----eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe
Q 001776 453 L----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (1015)
Q Consensus 453 ~----~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 528 (1015)
. .....+.+|...|.+++|+|++.. ++++++.|++|++||+++++.+..+. |...|.+++|+++ |.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswspd--G~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCC--CCEEEEEe
Confidence 1 122357889999999999999874 56899999999999999998888776 6678999999765 47999999
Q ss_pred CCCeEEEEeCCCCCceeeecCCCCceEE-----EEECCCCCEEEEEeeCCCCCceEEEEeCCC-CeeeEEeeCCCCC-Ce
Q 001776 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTM-----MAYSADGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKR-SV 601 (1015)
Q Consensus 529 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~-----~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~-~~~~~~~~~~~~~-~i 601 (1015)
.|+.|++||++++.....+..|.+.+.. ..|++++.++++++.++..+..|++||++. +.++..+..+... .+
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999998888778777764432 345689999999988765566899999985 5566555443322 22
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001776 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 602 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
......+++.++++|+.|+.|++|++..+. +..+....+..++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 233334557888899999999999998764 3444433445678899999964
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-25 Score=230.12 Aligned_cols=216 Identities=15% Similarity=0.169 Sum_probs=167.1
Q ss_pred ccccCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccCCce--e-eeeeEEecccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDE--L-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~--~-~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
++.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..|-. + .....+.+..-.|-++.|+|.... |+..+..|+
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg--il~s~a~g~ 151 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG--ILASGAHGS 151 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc--eEEeccCce
Confidence 4789999999999999 677899999999999999984421 1 112233444557889999998874 555566789
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCC-ceEEEEECCCCCEE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGH-SSTMMAYSADGARL 566 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~-~i~~~~~s~~~~~l 566 (1015)
+++||+.+++.+..+.+|...|.+..|+ .||.++++++.|..|+|||.+.... +.....|++ .-..+.|.-+-.+|
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~Ws--eDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rl 229 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWS--EDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERL 229 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccc--cCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhh
Confidence 9999999999999999999999999885 5668999999999999999987554 344445544 34567788777788
Q ss_pred EEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCce
Q 001776 567 FSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL 632 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~ 632 (1015)
++.+.+......+++||.+.. ..++++.......+..--|.||.+.++.+| .+.+++.+.+...++
T Consensus 230 isTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 230 ISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred hhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 888877766777999998763 455655554444566667899998887776 778898888876553
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=241.98 Aligned_cols=242 Identities=19% Similarity=0.241 Sum_probs=206.3
Q ss_pred EEEEc-cCCCEEEEEECCCeEEEEEccCCcee---eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-
Q 001776 423 RVMWS-PDGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG- 497 (1015)
Q Consensus 423 ~l~~s-pdg~~las~~~dg~v~iwd~~~~~~~---~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~- 497 (1015)
.+..+ |.+++|.+||.||.|++|++...... .....++.|...|+.++...+++ .++++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 36778999999999999998654321 12336788999999999999998 7999999999999999887
Q ss_pred -ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce----------eeec-CCCCceEEEEECCCCCE
Q 001776 498 -TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR----------VDYD-APGHSSTMMAYSADGAR 565 (1015)
Q Consensus 498 -~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----------~~~~-~~~~~i~~~~~s~~~~~ 565 (1015)
-+..++..|...|.|+++. ..+..++++|+.|+.|.+||++++... ..+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6778899999999999984 234479999999999999999976331 1122 45668999999999988
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
+++|+..+ .+++||.++++.+..+.+|.+ .|..+..++||..+++++.||+|++||+...+++.++..| ...|
T Consensus 186 ivsGgtek----~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH--~e~V 258 (735)
T KOG0308|consen 186 IVSGGTEK----DLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH--KEGV 258 (735)
T ss_pred EEecCccc----ceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec--cCce
Confidence 88887655 499999999999999999998 9999999999999999999999999999999999999877 5679
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+++..+|+-..+.+|+.||.|..=|+.+.
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999888765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=221.03 Aligned_cols=284 Identities=15% Similarity=0.203 Sum_probs=245.9
Q ss_pred CCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEE
Q 001776 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1015)
Q Consensus 357 ~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 436 (1015)
..|+++...|... .+.+|+.|..+.++|..+++.+.. +.||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheeec
Confidence 4678888888744 789999999999999999988765 89999999999999999999999
Q ss_pred ECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeC--CCCCEEEEe
Q 001776 437 YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG--HESPVYSIC 514 (1015)
Q Consensus 437 ~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--h~~~v~~i~ 514 (1015)
+.|..|+||......... ....|..+|+.+..+|.|. ||++++.|++..+.|+++|.++..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998766444 5678999999999999999 899999999999999999998876653 234578889
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEee
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~ 594 (1015)
|+|++ .++.+|..|+.+++||+........+.+|.++|..++|+.+|-++++++.|+ .|++||++.-+..+++.
T Consensus 355 fHpDg--Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDG--LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcCCc--eEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC----eEEEEEehhhcccceee
Confidence 97665 7899999999999999999998999999999999999999999999998754 49999999998888888
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 595 ~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
......+.+++|.+.|.+++.+|.|=.|++++-.+.........+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766799999999999999999887777777555544444444445667899999999999999999999888754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=228.79 Aligned_cols=299 Identities=14% Similarity=0.231 Sum_probs=229.9
Q ss_pred eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe----eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC
Q 001776 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA----VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE 619 (1015)
Q Consensus 544 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~----~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d 619 (1015)
...+..+...|.++++.|.|.++++|+.|. .|++||..... ..+.+.......|.++.|++.|..|++.+..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy----~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDY----TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccc----eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 344556666899999999999999998755 59999987432 2333343444578999999999999999999
Q ss_pred CcEEEEeCCCCceeEEEec----------CCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEccCCceeeeeecCCcccc
Q 001776 620 FMIKFWDMDNVNLLASIDA----------DGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDA 688 (1015)
Q Consensus 620 g~i~vwd~~~~~~~~~~~~----------~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 688 (1015)
...+++|....+......+ .+|...++|.+|+|+. ..+++++.||++|||++...+.....+.....
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~-- 313 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA-- 313 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC--
Confidence 9999999876655544432 2567789999999954 67889999999999999877544443332110
Q ss_pred ccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEe
Q 001776 689 SRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSL 768 (1015)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~ 768 (1015)
T Consensus 314 -------------------------------------------------------------------------------- 313 (641)
T KOG0772|consen 314 -------------------------------------------------------------------------------- 313 (641)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCC--Cc
Q 001776 769 RLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPED--AV 846 (1015)
Q Consensus 769 ~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~--~v 846 (1015)
.+..-.++..+|++||+++|+|+.||.|.+|+.......+.-. + ...|.. .|
T Consensus 314 ----~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~-----------------v-----k~AH~~g~~I 367 (641)
T KOG0772|consen 314 ----GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK-----------------V-----KDAHLPGQDI 367 (641)
T ss_pred ----CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE-----------------e-----eeccCCCCce
Confidence 0133457889999999999999999999999864321111110 0 112555 89
Q ss_pred cEEEEccCCCEEEEEc-CCeEEEEeCCCC-ceeEEeCCCC--CCeeEEEEcCCCCcEEEEEE------cCCeEEEEEccc
Q 001776 847 PCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPP--PAATFLAFHPQDNNIIAIGM------EDSSIQIYNVRV 916 (1015)
Q Consensus 847 ~~l~~s~dg~~la~~s-dg~i~iwd~~~~-~~~~~l~~~~--~~i~~l~~sp~d~~~la~g~------~dg~v~vwd~~~ 916 (1015)
+|++||+||++|++-+ |+++++||++.. +++.+..+-. .+-+.++||| +.++|++|. ..|++++||..+
T Consensus 368 tsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 368 TSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred eEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccc
Confidence 9999999999999998 999999999764 4555444332 3568899999 899999985 456899999999
Q ss_pred ceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001776 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 917 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd 955 (1015)
.+.++.+.-....|..+.|+|.-+.++.|+.||+++|+=
T Consensus 447 ~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 447 LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999999988888899999999999999999999998863
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=211.59 Aligned_cols=277 Identities=18% Similarity=0.229 Sum_probs=219.9
Q ss_pred EEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCcc-ccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC
Q 001776 372 LVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP-LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 372 la~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 450 (1015)
+++|++...|.-+++.-...-.. ..+... .+...+..|.++|+++|. +|.++|+|+.|-+|+|||+...
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~--------~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~ 73 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCT--------DSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR 73 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccc--------cccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccch
Confidence 57788877777777643320000 000011 122346789999999999 5899999999999999999987
Q ss_pred ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCC
Q 001776 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530 (1015)
Q Consensus 451 ~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d 530 (1015)
..+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+.....++.++++|.+.|+.++.+|++ ++-++.+.|
T Consensus 74 ~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D 148 (362)
T KOG0294|consen 74 KQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGD 148 (362)
T ss_pred hhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC--ceEEEEcCC
Confidence 7666 67789999999999988642259999999999999999999999999999999999998876 788999999
Q ss_pred CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 531 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
+.++.||+-.++.-....... .-..+.|+|.|.+++.++.++ |-+|.+.+......+.... .+.++.|. ++
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~-----i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~ 219 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNK-----IDIYQLDNASVFREIENPK--RILCATFL-DG 219 (362)
T ss_pred ceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEeccE-----EEEEecccHhHhhhhhccc--cceeeeec-CC
Confidence 999999998877666555433 334599999999999887554 9999988877666555432 35555554 56
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE--cCCCCEEEEEeCCCcEEEEEccCC
Q 001776 611 NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF--NKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
..+++|++|+.|.+||.++..+...+..| ...|..+.+ .|++.+|++++.||.|++||++..
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 79999999999999999998888888866 678888874 457899999999999999999765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-26 Score=214.99 Aligned_cols=296 Identities=17% Similarity=0.251 Sum_probs=242.8
Q ss_pred ceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEE
Q 001776 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1015)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1015)
..+++.+. |.+.|+.++-..... ++.+++.|.+.+||.+++|.++.+ +.||.+.|+++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence 45555555 999999999988777 899999999999999999999986 889999999999
Q ss_pred EccCCCEEEEEECCCeEEEEEc------cC------------------------------Ccee-eeeeEEecccCceeE
Q 001776 426 WSPDGTLFGVAYSKHIVHLYTY------HG------------------------------GDEL-RNHLEIEAHVGSVND 468 (1015)
Q Consensus 426 ~spdg~~las~~~dg~v~iwd~------~~------------------------------~~~~-~~~~~~~~h~~~V~~ 468 (1015)
|++.+.++++++.|++.+||.. .. +-.+ .+...+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999972 11 0011 124468899999999
Q ss_pred EEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC-ceeee
Q 001776 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDY 547 (1015)
Q Consensus 469 ~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~ 547 (1015)
+.|...|+ .+++++.|.+..+||+++|+.+..+.||....+.++-+|.. +++++.+.|.+.++||++..- ....+
T Consensus 278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VF 353 (481)
T KOG0300|consen 278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVF 353 (481)
T ss_pred hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeee
Confidence 99999998 69999999999999999999999999999999999887665 799999999999999998533 35568
Q ss_pred cCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe-eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001776 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1015)
Q Consensus 548 ~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd 626 (1015)
.+|...|+++.|..+. .+++++.| .+|++||++..+ ++.++.... +++.++++..+..|+.--++..|++||
T Consensus 354 QGHtdtVTS~vF~~dd-~vVSgSDD----rTvKvWdLrNMRsplATIRtdS--~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 354 QGHTDTVTSVVFNTDD-RVVSGSDD----RTVKVWDLRNMRSPLATIRTDS--PANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccccceeEEEEecCC-ceeecCCC----ceEEEeeeccccCcceeeecCC--ccceeEeecCCceEEeccCCceEEEEe
Confidence 8999999999998765 56777654 469999998764 455555433 788899988888888888889999999
Q ss_pred CCCCceeEEEe---cCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEccCC
Q 001776 627 MDNVNLLASID---ADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 627 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+....+ ..+. ..+|...|.|++|..+. .-|++++.|..+.-|++...
T Consensus 427 lnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 975443 3332 23557789999998754 45788999999999988654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-27 Score=226.37 Aligned_cols=284 Identities=14% Similarity=0.209 Sum_probs=232.4
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCE
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (1015)
-+|.+.|.|++=+|..-..+|+|+.||.|+|||+...+++.. +..|.+.|..+++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc--cc
Confidence 459999999999999866899999999999999999887765 788999999999987 78
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
+++++.|.+|+.|.++.. ..+ ++. -...+..+.-+..+. .++|||. .|.|||.....++..+.--...|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---til-g~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TIL-GKSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eee-ccccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 899999999999998763 232 333 334566676666666 6888887 5899999999999999877888999
Q ss_pred EeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC-eeeE
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKR 591 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~ 591 (1015)
+.|+|... ..|++++.|+.|.+||+++......... ...-+.++|+|.+-.++++.. +..++.+|++.- +++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccch
Confidence 99998776 6888999999999999998877665443 335578999997777777654 445999998864 5667
Q ss_pred EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 592 ~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
.+.+|.. .|.++.|+|.|..+++||.|.+|+||..+.+.-...+.. ..-..|.|+.||.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7777776 899999999999999999999999999987754433321 12346899999999999999999999999987
Q ss_pred cCC
Q 001776 672 ADG 674 (1015)
Q Consensus 672 ~~~ 674 (1015)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=241.83 Aligned_cols=254 Identities=17% Similarity=0.200 Sum_probs=203.7
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCcee----------eeeeEEecccCceeEEEEec-CCCceEEEEEeC
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL----------RNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGE 485 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~----------~~~~~~~~h~~~V~~~~~s~-~~~~~~l~s~s~ 485 (1015)
|-..|+....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 4456677777888777888888877778876554322 11224779999999999999 777 7999999
Q ss_pred CCeEEEEEcCCC-------ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEE
Q 001776 486 DRVIKVWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1015)
Q Consensus 486 dg~v~vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 558 (1015)
|++|++||+.++ ..+..+.+|...|.+++|+|..+ ++|++++.|++|++||+.+......+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 35678899999999999987643 5899999999999999998888888888888999999
Q ss_pred ECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCc-ee
Q 001776 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVN-LL 633 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----~dg~i~vwd~~~~~-~~ 633 (1015)
|+|+|..|++++.|+ .|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. ++
T Consensus 176 ~spdG~lLatgs~Dg----~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSKDK----KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecCCC----EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 999999999998654 6999999999999999888764556678899888888765 47899999998754 33
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEccCCceeee
Q 001776 634 ASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLR 679 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~ 679 (1015)
.....+ ....+....|++++.+|++++ .|+.|++||+.++ ..+.
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~-~~~~ 296 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE-RLTF 296 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC-ceEE
Confidence 333322 233455677999999999887 5999999999987 4433
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=225.36 Aligned_cols=284 Identities=15% Similarity=0.244 Sum_probs=233.2
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
.+.|.+++|+|..+..+.+++| -.+.+|+..+......+..-...+.++.|..||+.+++|.. .+.|++||..+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~----sG~V~vfD~k~ 99 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDE----SGHVKVFDMKS 99 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCC----cCcEEEecccc
Confidence 4679999999977655555554 57889998877776666666778999999999999998854 55799999888
Q ss_pred CeeeEEeeCCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCC
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDN 664 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg 664 (1015)
...++.+..|.. ++..+.|+|+++ .+++|++|+.+++||+.+......+. +|.+.|.|.+|+| ++.++++|+.||
T Consensus 100 r~iLR~~~ah~a-pv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~--~htDYVR~g~~~~~~~hivvtGsYDg 176 (487)
T KOG0310|consen 100 RVILRQLYAHQA-PVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS--GHTDYVRCGDISPANDHIVVTGSYDG 176 (487)
T ss_pred HHHHHHHhhccC-ceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec--CCcceeEeeccccCCCeEEEecCCCc
Confidence 788899999987 999999999775 55667788999999999988644555 4588999999999 556899999999
Q ss_pred cEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccc
Q 001776 665 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA 744 (1015)
Q Consensus 665 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 744 (1015)
.|++||+.+...
T Consensus 177 ~vrl~DtR~~~~-------------------------------------------------------------------- 188 (487)
T KOG0310|consen 177 KVRLWDTRSLTS-------------------------------------------------------------------- 188 (487)
T ss_pred eEEEEEeccCCc--------------------------------------------------------------------
Confidence 999999864300
Q ss_pred cccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCcee
Q 001776 745 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824 (1015)
Q Consensus 745 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 824 (1015)
.+..
T Consensus 189 ---------------------------------~v~e------------------------------------------- 192 (487)
T KOG0310|consen 189 ---------------------------------RVVE------------------------------------------- 192 (487)
T ss_pred ---------------------------------eeEE-------------------------------------------
Confidence 0000
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCC-ceeEEeCCCCCCeeEEEEcCCCCcEEEEE
Q 001776 825 WQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIG 903 (1015)
Q Consensus 825 ~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~-~~~~~l~~~~~~i~~l~~sp~d~~~la~g 903 (1015)
+ .|..+|..+.+-|.|.++|+++...|+|||+.+| +.+..+..|...|+|+.+.. ++..|++|
T Consensus 193 ------------l---nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 193 ------------L---NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred ------------e---cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 0 1778888999999999999999999999999855 44455555999999999999 89999999
Q ss_pred EcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 904 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 904 ~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
+-|+.|++||+.+-+.+..+. ..++|.+++.|||+..++.|..||.+.+-+....+
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999999999999999998887 67899999999999999999999998877655443
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=222.82 Aligned_cols=254 Identities=21% Similarity=0.263 Sum_probs=213.9
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeee--------------eEE-ecccCceeEEEEecCCCce
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--------------LEI-EAHVGSVNDLAFSYPNKQL 478 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~--------------~~~-~~h~~~V~~~~~s~~~~~~ 478 (1015)
...|.-+|.+++++||+++.++++.+|+|.=|++.+|+..+.. ..- .+|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999988643110 011 27889999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEE
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 558 (1015)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|.... ..+++++.|+.|++|+++....+.++.+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 89999999999999999999999999999999999997555 5799999999999999998888888999999999998
Q ss_pred ECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001776 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 638 (1015)
...-++.+-+++.|+ ++++|++.. .....+.++.. .+.+++|-.+ .++++|+.+|.|.+|++...+++.+...
T Consensus 294 aL~reR~vtVGgrDr----T~rlwKi~e-esqlifrg~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDR----TVRLWKIPE-ESQLIFRGGEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccccc----eeEEEeccc-cceeeeeCCCC-CeeeEEEecc-cceeeccCCceEEEeeecccCceeEeec
Confidence 888887777776654 699999943 33345566654 7888888654 6899999999999999999998877653
Q ss_pred CC----------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceee
Q 001776 639 DG----------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (1015)
Q Consensus 639 ~~----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1015)
.. +...|++++..|...++|+|+.+|.|++|.+.++.+.+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 21 11268899999999999999999999999998884433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=244.56 Aligned_cols=264 Identities=15% Similarity=0.221 Sum_probs=201.9
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeE------------------------------eee------
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV------------------------------KSF------ 397 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~------------------------------~~~------ 397 (1015)
.|.+.|+++.||+||+ +||+|+.||.|+||.+...+.... ...
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 3999999999999999 889999999999999876111000 000
Q ss_pred ----EEEeccCC-CccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEe
Q 001776 398 ----KVWELGAC-SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (1015)
Q Consensus 398 ----~~~~~~~~-~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s 472 (1015)
...+.... ..+.+...+.||.+.|..++||.++ +|++++.|.+|++|++...++++. | .|..-|+|++|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~---F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV---F-SHNDFVTCVAFN 418 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE---E-ecCCeeEEEEec
Confidence 00000000 0011222478999999999999764 889999999999999999888873 3 399999999999
Q ss_pred cCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC---
Q 001776 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--- 549 (1015)
Q Consensus 473 ~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--- 549 (1015)
|-+.+ ++++|+-||.|+||++...+.+.-...+ .-|+++||.|+ |+..+.|+.+|.+++|+....+.......
T Consensus 419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 97777 8999999999999999877776655544 77999999766 58999999999999999876554433211
Q ss_pred -----CCCceEEEEECCCCC-EEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCC-CeEEEEEeCCCCEEEEEeCCCcE
Q 001776 550 -----PGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMI 622 (1015)
Q Consensus 550 -----~~~~i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~-~i~~v~~~~~~~~l~~~~~dg~i 622 (1015)
....|+++.|.|... .+++.+. +..|+|+|.++..++..|++.... .-....|+.||++|+++++|..|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSn----DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSN----DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecC----CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceE
Confidence 123799999987443 3444443 456999999999999999987542 33557899999999999999999
Q ss_pred EEEeCCCCc
Q 001776 623 KFWDMDNVN 631 (1015)
Q Consensus 623 ~vwd~~~~~ 631 (1015)
++|+.....
T Consensus 571 YiW~~~~~~ 579 (712)
T KOG0283|consen 571 YIWKNDSFN 579 (712)
T ss_pred EEEeCCCCc
Confidence 999986543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=242.47 Aligned_cols=244 Identities=21% Similarity=0.319 Sum_probs=211.7
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~ 495 (1015)
.+...+.+..|. +.++++++.+.+|++|+..++..+.. .+.+|.+.|+++++..-+. ++++|+.|.++++||..
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 366788899998 67899999999999999999876652 3899999999999987455 89999999999999999
Q ss_pred CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 496 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
+|++.+.+.+|...|.++...+ ..+++|+.|.+|++|++.++.....+.+|..+|.++..+ +.++++++.|+
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-- 351 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-- 351 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc--
Confidence 9999999999999999997532 478889999999999999999998888899999999998 88999998755
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcCCC
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
.|.+||+.++++++.+.+|.. .|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.+| ...+..+.+ .+
T Consensus 352 --~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h--~~~v~~l~~--~~ 423 (537)
T KOG0274|consen 352 --TVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH--TSLVSSLLL--RD 423 (537)
T ss_pred --eEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC--ccccccccc--cc
Confidence 699999999999999999887 8999877665 89999999999999999999 899999877 444544443 57
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeeeec
Q 001776 655 ILLAVSTNDNGIKILANADGIRLLRTVE 682 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1015)
++|++++.|++|++||..++ .+.+.+.
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~ 450 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG-ECLRTLE 450 (537)
T ss_pred ceeEeccccccEEEeecccC-ceeeeec
Confidence 89999999999999999887 4444443
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=223.43 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=228.1
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEe
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 537 (1015)
.+.+|...|.|++=+|..-. .+++|+.||.|++||+.+..+..++..|.+.|..+++.. ..+++++.|.+|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46899999999999998733 699999999999999999999999999999999999865 4699999999999998
Q ss_pred CCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC-EEEEE
Q 001776 538 YDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAA 616 (1015)
Q Consensus 538 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~ 616 (1015)
++.. ...++. ....+..+.-+..+..++++|. .|.|||.....++..+.-..+ .+.++.|+|... .|+++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 7752 222222 2335666666777778888875 399999999999999887776 899999999774 55556
Q ss_pred eCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccce
Q 001776 617 GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI 696 (1015)
Q Consensus 617 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (1015)
+.|+.|.+||++.+.++..+... ..-+.++|+|++..++++++|..++.||+..-.+.+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILT---MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeee---ccccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 69999999999999998887653 3457899999888899999999999999875533322221
Q ss_pred ecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCC
Q 001776 697 VKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTA 776 (1015)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 776 (1015)
+|.
T Consensus 270 -----------------------------------------------------------------------------dhv 272 (433)
T KOG0268|consen 270 -----------------------------------------------------------------------------DHV 272 (433)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 377
Q ss_pred ccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCC
Q 001776 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1015)
Q Consensus 777 ~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~ 856 (1015)
+.|.++.|||.|+-+++|+-|.+|+||....+. +.... -+ ..-..|.|+.||.|.+
T Consensus 273 sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-------------------SRdiY---ht--kRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-------------------SRDIY---HT--KRMQHVFCVKYSMDSK 328 (433)
T ss_pred eeEEEeccCCCcchhccccccceEEEeecCCCc-------------------chhhh---hH--hhhheeeEEEEecccc
Confidence 889999999999999999999999999765320 00000 00 0234688999999999
Q ss_pred EEEEEc-CCeEEEEeCCCCc
Q 001776 857 YVMSAS-GGKISLFNMMTFK 875 (1015)
Q Consensus 857 ~la~~s-dg~i~iwd~~~~~ 875 (1015)
++++|+ |+.|++|...-.+
T Consensus 329 yi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEEecCCCcceeeeecchhh
Confidence 999999 7999999875433
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=208.08 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=203.3
Q ss_pred cccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCce--eeeeeEEecccCceeEEEEecCCCceEEEEEeCCC
Q 001776 410 QASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1015)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~--~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg 487 (1015)
...++++|.+.|++++||.||++||+++.|++|++|+++.-.. -+.+ ...-.-+.-+.++|+||-+. +++++-...
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEECCCcce-EEEEEccCC
Confidence 3445899999999999999999999999999999999875211 0100 11112234678999999986 566677777
Q ss_pred eEEEEEcCC---CceEEE--------e-eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceE
Q 001776 488 VIKVWDAVT---GTKQYI--------F-EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSST 555 (1015)
Q Consensus 488 ~v~vwd~~~---~~~~~~--------~-~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 555 (1015)
++++|.+.. |..... | +.|+..|..+-. .+++.+|++++.|..|.+|++. ++...........-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 999997643 222111 1 235555655544 4566899999999999999998 555555555444556
Q ss_pred EEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEE
Q 001776 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLAS 635 (1015)
Q Consensus 556 ~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 635 (1015)
..+.||+|+++++++...+ +.+|. +.|..+|.+ .+....
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE--------------------~~f~kdG~f-----------------qev~rv 271 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWE--------------------PIFTKDGTF-----------------QEVKRV 271 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEE--------------------EEeccCcch-----------------hhhhhh
Confidence 6777888888887776443 66664 234433321 111222
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccc
Q 001776 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (1015)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1015)
++..+|...|..++|+++...+++.+.||+++|||.+-..+.- ..
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~-----qD------------------------------ 316 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG-----QD------------------------------ 316 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC-----CC------------------------------
Confidence 3333558899999999999999999999999999985331100 00
Q ss_pred cccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEec
Q 001776 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 795 (1015)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~ 795 (1015)
+..++....+.....+.-..++.+|+|+.|+.+.
T Consensus 317 ----------------------------------------------pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 317 ----------------------------------------------PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF 350 (420)
T ss_pred ----------------------------------------------chHhhcCCcchhhcCCCceEEEeCCCCcEEEeec
Confidence 0000000001111222233789999999777665
Q ss_pred cCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEe
Q 001776 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFN 870 (1015)
Q Consensus 796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd 870 (1015)
. ..++++.- ++|......-. .|...|.+++|+++|+++|+++|..+++..
T Consensus 351 g-s~l~~~~s----------------------e~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 351 G-SDLKVFAS----------------------EDGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred C-CceEEEEc----------------------ccCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 4 35665543 33332221111 289999999999999999999999999886
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=233.71 Aligned_cols=293 Identities=20% Similarity=0.241 Sum_probs=236.4
Q ss_pred cCCCee---EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCC
Q 001776 355 QGSAVK---SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1015)
Q Consensus 355 h~~~V~---~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (1015)
|...|. ++..++.+.++|.+|+.||.|++|+......... .+. ...+..|.+.|+.++...+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~~-~asme~HsDWVNDiiL~~~~~ 86 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TPY-IASMEHHSDWVNDIILCGNGK 86 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cch-hhhhhhhHhHHhhHHhhcCCC
Confidence 344455 5666666666899999999999999865432111 011 112678999999999999999
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEE-ecCCCceEEEEEeCCCeEEEEEcCCCc--eEE-------
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF-SYPNKQLSVVTCGEDRVIKVWDAVTGT--KQY------- 501 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~-s~~~~~~~l~s~s~dg~v~vwd~~~~~--~~~------- 501 (1015)
.|++++.|-+|++|+...+. .....++..|...|.|+++ .++.. .+|+||-|+.|.+||+.++. .+.
T Consensus 87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 99999999999999998874 2233378889999999999 66666 89999999999999999872 232
Q ss_pred -Eee-CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 502 -IFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 502 -~~~-~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
.+. |+..+|++++.++. |..+++|+..+.+++||.++.+.+..+.+|...|..+..++||..+++++.|+ +|
T Consensus 164 ~sl~sG~k~siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg----tI 237 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG----TI 237 (735)
T ss_pred ccCCCCCccceeeeecCCc--ceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc----eE
Confidence 223 78889999987544 47899999999999999999999999999999999999999999999998755 69
Q ss_pred EEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001776 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 659 (1015)
++||+...+++.++..|.. .+.++..+|+-..+++|+.||.|+.=|+++......+-.. ..+|..+..+...+-+-+
T Consensus 238 rlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 238 RLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWV 314 (735)
T ss_pred EeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCcee
Confidence 9999999999999999998 6999999999999999999999999999885333333222 346677777754555567
Q ss_pred EeCCCcEEEEEcc
Q 001776 660 STNDNGIKILANA 672 (1015)
Q Consensus 660 ~~~dg~i~iw~~~ 672 (1015)
++.|+.|+-|...
T Consensus 315 tTtds~I~rW~~~ 327 (735)
T KOG0308|consen 315 TTTDSSIKRWKLE 327 (735)
T ss_pred eeccccceecCCc
Confidence 7889999999764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=206.75 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=194.7
Q ss_pred ccCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 415 ~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
....+.|.+++||| ...+++.++.||+||+|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 44678999999999 566777899999999999987422222 24567999999999999998 899999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+.++ .+..+..|.++|..+.|.+..+...|++|+.|++|+.||.+.......+..++ .++++.. ...+++++..++
T Consensus 101 L~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 101 LASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATAER 176 (347)
T ss_pred ccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEecCC
Confidence 9999 56667789999999999877766789999999999999999887777766543 4444433 334566665443
Q ss_pred CCCceEEEEeCCCCe-eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc--eeEEEecCCC-------CC
Q 001776 574 EGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN--LLASIDADGG-------LQ 643 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~-------~~ 643 (1015)
.|.+|+++.+. ..+.....-...+++++..++....+.|+-+|.+-|..+..+. .-..++.|.. ..
T Consensus 177 ----~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 177 ----HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ----cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 49999997653 3333333344468899999999888999999999999988763 3334444432 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 644 ASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 644 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.|++++|+|.-..|++++.||++.+||-...
T Consensus 253 aVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 253 AVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EecceEeecccceEEEecCCceEEEecchhh
Confidence 5789999999999999999999999997654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-25 Score=223.98 Aligned_cols=298 Identities=18% Similarity=0.240 Sum_probs=228.3
Q ss_pred EEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 350 ~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
++.-+|+..|.++++.|.|- -+++|+.|..|++||+..-..... .|+ .+.......|++++||+.
T Consensus 161 i~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~-~fr-------------~l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMR-SFR-------------QLQPCETHQINSLQYSVT 225 (641)
T ss_pred EeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccch-hhh-------------ccCcccccccceeeecCC
Confidence 34444788999999999999 579999999999999976432211 111 112345568999999999
Q ss_pred CCEEEEEECCCeEEEEEccCCcee---------eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce-
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDEL---------RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK- 499 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~---------~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~- 499 (1015)
|..|++.+.....+|+|-..-+.. ..+..-+||...++|.+|+|+.+. .++|++.||++++||+..-+.
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~k~q 304 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNTKSQ 304 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCchhh
Confidence 999999999999999997653322 222234689999999999999988 799999999999999986532
Q ss_pred EEEee-----CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce---eeecCCCC--ceEEEEECCCCCEEEEE
Q 001776 500 QYIFE-----GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---VDYDAPGH--SSTMMAYSADGARLFSC 569 (1015)
Q Consensus 500 ~~~~~-----~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---~~~~~~~~--~i~~~~~s~~~~~l~~~ 569 (1015)
+..++ +..-+++.++|+++ |.+|++|+.||.|.+|+....... ..-..|.. .|++++||+||++|++-
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence 33332 33456788888655 478999999999999997654332 22334444 89999999999999998
Q ss_pred eeCCCCCceEEEEeCCCC-eeeEEeeCCCC-CCeEEEEEeCCCCEEEEEe------CCCcEEEEeCCCCceeEEEecCCC
Q 001776 570 GTNKEGESYLVEWNESEG-AVKRTYHGLGK-RSVGVVQFDTTKNRFLAAG------DEFMIKFWDMDNVNLLASIDADGG 641 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~-~~i~~v~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~ 641 (1015)
+.|. .+++||++.. +++....+... ..-+.++|+|+.+.|++|. ..|.+++||..+.+.++.+...
T Consensus 383 g~D~----tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-- 456 (641)
T KOG0772|consen 383 GFDD----TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-- 456 (641)
T ss_pred cCCC----ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence 7654 5999999875 44554444322 2346689999999999985 3578999999999999998876
Q ss_pred CCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 642 LQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 642 ~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
...|..+.|+|.-+.|++++.||.++||--
T Consensus 457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEEeecchhhheeeecCCCceEEEEC
Confidence 557889999998888999999999998743
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=244.22 Aligned_cols=309 Identities=17% Similarity=0.210 Sum_probs=235.0
Q ss_pred EeeCCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCC------------ceeEEEecCCCCCCcceEEEcCCCCEE
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNV------------NLLASIDADGGLQASPCIRFNKEGILL 657 (1015)
Q Consensus 592 ~~~~~~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (1015)
.+-.|.+..|.++..+|++..+++|| .||.+.||+...- +.+..+. .|.+.|+|+.|+|||++|
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--DHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec--cccCceeEEEECCCCCeE
Confidence 34556666899999999999999999 9999999986421 1223333 447789999999999999
Q ss_pred EEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCc
Q 001776 658 AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFT 737 (1015)
Q Consensus 658 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1015)
|+|++|+.|.||+.... .....
T Consensus 85 AsGSDD~~v~iW~~~~~--~~~~~-------------------------------------------------------- 106 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEI--GSGTV-------------------------------------------------------- 106 (942)
T ss_pred eeccCcceEEEeeeccc--CCccc--------------------------------------------------------
Confidence 99999999999986531 00000
Q ss_pred ccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCcee
Q 001776 738 DVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKAT 817 (1015)
Q Consensus 738 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 817 (1015)
.-+.+....+.-|... .. ..+|...|..++|+|++.++++++.|++|.+|+..+
T Consensus 107 ----fgs~g~~~~vE~wk~~--------~~----l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t---------- 160 (942)
T KOG0973|consen 107 ----FGSTGGAKNVESWKVV--------SI----LRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT---------- 160 (942)
T ss_pred ----ccccccccccceeeEE--------EE----EecCCCccceeccCCCccEEEEecccceEEEEcccc----------
Confidence 0011111233334321 11 124999999999999999999999999999997542
Q ss_pred cccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCC------CeeEE
Q 001776 818 TNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPP------AATFL 890 (1015)
Q Consensus 818 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~------~i~~l 890 (1015)
.+ ....+.+ |.+.|..+.|.|-|+|+|+-+ |++|+||++.+....+.+.++-. -...+
T Consensus 161 ------------F~-~~~vl~~--H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 161 ------------FE-LLKVLRG--HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ------------ce-eeeeeec--ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 21 1223555 999999999999999999998 89999999988888888776543 47889
Q ss_pred EEcCCCCcEEEEEEc----CCeEEEEEcccceEEEEEcCccCCeEEEEEeCC-------------CC----EEEEEeCCC
Q 001776 891 AFHPQDNNIIAIGME----DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT-------------LN----VLVSSGADS 949 (1015)
Q Consensus 891 ~~sp~d~~~la~g~~----dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spd-------------g~----~l~s~s~dg 949 (1015)
.||| ||++|++.-. -.++.|.+-.+.+.-..|-||.+++.++.|+|. .. .+|+||.|+
T Consensus 226 SWSP-DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 226 SWSP-DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred ccCC-CcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 9999 9999998632 237889998888888899999999999999972 11 678999999
Q ss_pred cEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE-EeCCeEEEEEcCCce
Q 001776 950 QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1015)
Q Consensus 950 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~~g~ 1009 (1015)
+|.||.....++. ..+.... ..+|..++|||||..|++ +.||+|.+...+..+
T Consensus 305 SlSVW~T~~~RPl--~vi~~lf-----~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 305 SLSVWNTALPRPL--FVIHNLF-----NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred cEEEEecCCCCch--hhhhhhh-----cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 9999998664422 2222222 256999999999999998 599999999987654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=205.82 Aligned_cols=269 Identities=17% Similarity=0.250 Sum_probs=214.0
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
..+.|.++.|+|.+..| ++++.||++++||+...+... ...|+.++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~L-LvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDL-LVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcE-EEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 35689999999998855 555699999999998875443 345899999999987 56789
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+|+.||.|+.+|+.++... .+..|..+|.|+.+++-.. .+++||.|++|++||.+.......+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 9999999999999998755 3677999999999998777 79999999999999988765555555 344788886
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC--CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC----e
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG----A 588 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~----~ 588 (1015)
. .|+.|++|+.|..+.+||+++......... -.-.++++++-|++.-.++++.+| ++.+=..... .
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG----RVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG----RVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc----eEEEEccCCchHHhh
Confidence 5 236899999999999999998776553322 233789999999888888887644 3544333333 3
Q ss_pred eeEEeeCCCC--------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001776 589 VKRTYHGLGK--------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 589 ~~~~~~~~~~--------~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
....|+.|.. .+|.+++|+|-...|++||.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4445666532 36889999999999999999999999999999888887644 5578999999999999998
Q ss_pred eC
Q 001776 661 TN 662 (1015)
Q Consensus 661 ~~ 662 (1015)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 63
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=228.37 Aligned_cols=284 Identities=15% Similarity=0.289 Sum_probs=238.6
Q ss_pred ceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEE-E
Q 001776 347 KTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR-V 424 (1015)
Q Consensus 347 ~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l 424 (1015)
.++.+.+. |...|..+++.+.. .+++++.||++++|+-..++.+.. ..+.+|.+-|.+ +
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i 64 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSI 64 (745)
T ss_pred ceeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccc
Confidence 34556666 99999999988876 478999999999999877665542 125678888888 8
Q ss_pred EEcc-CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe
Q 001776 425 MWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 425 ~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 503 (1015)
++-+ |+-.|++|+.|+.|.+|...+...+. .+.+|+..|+++....++. +++||.|.++++|- .+++...+
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l 136 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSL 136 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhccc
Confidence 8886 55579999999999999999987666 8999999999999887775 89999999999996 66777789
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
.+|+..|+++...+.. .+++|+.|.+|++|.- +....++.+|..-|+.+++-+++. +++++. ++.|+.|+
T Consensus 137 ~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~ 206 (745)
T KOG0301|consen 137 QGHTASVWAVASLPEN---TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWD 206 (745)
T ss_pred CCcchheeeeeecCCC---cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEe
Confidence 9999999999876653 8999999999999954 567788899999999999998764 566655 44699999
Q ss_pred CCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
+ +|+.+..+.+|.. .+++++...++..++++|+|++++||+.. ++.+.+..+ ...|+++.+-++|. +++|+.|
T Consensus 207 ~-~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP--ttsiWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP--TTSIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred c-cCceeeeeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC--ccceEEEEEeeCCC-EEEeccC
Confidence 8 8999999999998 89999988888999999999999999976 788888765 44788888888885 5678899
Q ss_pred CcEEEEEccCC
Q 001776 664 NGIKILANADG 674 (1015)
Q Consensus 664 g~i~iw~~~~~ 674 (1015)
|.||||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999987643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-24 Score=202.65 Aligned_cols=304 Identities=14% Similarity=0.203 Sum_probs=219.7
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCcee----eecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV----DYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
..+++|...|++++|+ .||+.|++++.|+.|++|+++...... ......+..+.+.|+||.+-+++....+
T Consensus 80 ~~LKgH~~~vt~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g--- 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFS--SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG--- 154 (420)
T ss_pred hhhhccCCceeeeEEc--CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC---
Confidence 3578999999999995 556899999999999999998643321 1122233567899999999888776543
Q ss_pred ceEEEEeCCC---CeeeE--------EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 577 SYLVEWNESE---GAVKR--------TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 577 ~~i~iwd~~~---~~~~~--------~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
..+++|.+.. |.... .+...+...+..+-....+.+|++++.|..|.+|++. |+.+..+... ...-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn--q~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN--QSSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc--cccc
Confidence 3688887543 22111 1111122245556666778999999999999999998 8888888654 3455
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccc
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAA 725 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1015)
+..+.||+|+++++++..--+++|.+--+ -.+.-
T Consensus 232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~------kdG~f---------------------------------------- 265 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFT------KDGTF---------------------------------------- 265 (420)
T ss_pred cceeeCCCCcEEEEecCCCCceEEEEEec------cCcch----------------------------------------
Confidence 78899999999999999999999975211 11100
Q ss_pred cccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeec
Q 001776 726 MVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKW 805 (1015)
Q Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~ 805 (1015)
....|++.+. +|...|..++||++.+.+++.+.||.+++||.
T Consensus 266 ----------------------qev~rvf~Lk----------------GH~saV~~~aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 266 ----------------------QEVKRVFSLK----------------GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ----------------------hhhhhhheec----------------cchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence 0122333333 59999999999999999999999999999998
Q ss_pred ccc-CCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeC-CC
Q 001776 806 PRN-ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFM-PP 883 (1015)
Q Consensus 806 ~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~-~~ 883 (1015)
+.+ ....+.+.+..+. ..+. ...+....+++||.|+.||.+....++++..++++...++. .|
T Consensus 308 dVrY~~~qDpk~Lk~g~-------------~pl~--aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h 372 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGS-------------APLH--AAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIH 372 (420)
T ss_pred cceEecCCCchHhhcCC-------------cchh--hcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhh
Confidence 743 1111222211111 0111 13344558999999999999999999999999988777765 58
Q ss_pred CCCeeEEEEcCCCCcEEEEEEcCCeEEEEE
Q 001776 884 PPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1015)
Q Consensus 884 ~~~i~~l~~sp~d~~~la~g~~dg~v~vwd 913 (1015)
...|.+++|++ +|+++++++ |+.+++..
T Consensus 373 ~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 373 STTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 88999999999 999999885 77788775
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=207.82 Aligned_cols=325 Identities=15% Similarity=0.241 Sum_probs=235.3
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEe
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd 537 (1015)
.+.||...|+.++...... .+.+++.|.+.+||.+++|+|+.++.||.+.|+++.|++++ .++++++.|++-+||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~--~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG--LLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecccc--ceEEEccCCcchHHHH
Confidence 6889999999999876655 89999999999999999999999999999999999998766 7999999999999996
Q ss_pred CCCCCceeee---cCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEE
Q 001776 538 YDNLGSRVDY---DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (1015)
Q Consensus 538 ~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 614 (1015)
..-.-..... ..+.+. ....-+........++...+ ..+| ..++..+.+|.. .|.+..|-..|..++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d~d~~~~sD-~~ti-------RvPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRDTDSSEKSD-GHTI-------RVPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccccccccccC-Ccee-------eeeeeeeecccc-ceEehhhhcCcceee
Confidence 3211111000 000000 00000100001111110000 0112 235677888876 888888999999999
Q ss_pred EEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccccc
Q 001776 615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASA 694 (1015)
Q Consensus 615 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1015)
+++.|.+..+||+++++.+..+.+| ....+.++-+|..+++++.+.|.+.++||.......+..
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGH--d~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~V-------------- 352 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGH--DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAV-------------- 352 (481)
T ss_pred eeeccccceeeeeccCceeccccCc--chhccccccCCcceEEEEeccCceeEeccchhhcceeee--------------
Confidence 9999999999999999999999987 557888889999999999999999999998633111111
Q ss_pred ceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCc
Q 001776 695 AIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNL 774 (1015)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~ 774 (1015)
T Consensus 353 -------------------------------------------------------------------------------- 352 (481)
T KOG0300|consen 353 -------------------------------------------------------------------------------- 352 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccC
Q 001776 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1015)
Q Consensus 775 ~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~d 854 (1015)
+.| |...|++..|..|
T Consensus 353 --------------------------------------------------------------FQG--HtdtVTS~vF~~d 368 (481)
T KOG0300|consen 353 --------------------------------------------------------------FQG--HTDTVTSVVFNTD 368 (481)
T ss_pred --------------------------------------------------------------ecc--cccceeEEEEecC
Confidence 111 5556666666554
Q ss_pred CCEEEEEc-CCeEEEEeCCCCc-eeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEE----EEcCccC
Q 001776 855 DSYVMSAS-GGKISLFNMMTFK-TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT----KLKGHQK 928 (1015)
Q Consensus 855 g~~la~~s-dg~i~iwd~~~~~-~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~----~l~~h~~ 928 (1015)
.+ +++|+ |.+|+|||+.+.+ .+.+++ ...+++.++.+. ++.++|.--+++.|++||++..++.+ .-++|..
T Consensus 369 d~-vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR 445 (481)
T KOG0300|consen 369 DR-VVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR 445 (481)
T ss_pred Cc-eeecCCCceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccce
Confidence 43 44555 6777777776643 445555 567889999998 88899999899999999998554321 2358999
Q ss_pred CeEEEEEeCCC--CEEEEEeCCCcEEEEEccCc
Q 001776 929 RITGLAFSNTL--NVLVSSGADSQLCVWSTDGW 959 (1015)
Q Consensus 929 ~v~~l~~spdg--~~l~s~s~dg~v~vWd~~~~ 959 (1015)
.|+|++|+.+- .-|++++.|..+.-|.+...
T Consensus 446 MV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 446 MVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999998554 45889999999999998763
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=219.02 Aligned_cols=470 Identities=14% Similarity=0.154 Sum_probs=309.7
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCc-eEEEEEeCCCeEEEEEcCCCce
Q 001776 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ-LSVVTCGEDRVIKVWDAVTGTK 499 (1015)
Q Consensus 421 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~-~~l~s~s~dg~v~vwd~~~~~~ 499 (1015)
-..-.||+|+++++.+..+ .|.||...+|.++. .+.+|..+++.+.+.|.... .++++++.||.|++||...+..
T Consensus 19 ~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred ecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 3345789999999877655 59999999999888 78999999999999987764 4788999999999999999999
Q ss_pred EEEeeCCCCCEEEEeeccc--CCccEEEEEeCCCeE------------EEEeCCCCCce-eeecCCCCceEEEEECCCCC
Q 001776 500 QYIFEGHESPVYSICPHHK--ENIQFIFSTATDGKI------------KAWLYDNLGSR-VDYDAPGHSSTMMAYSADGA 564 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~--~~~~~l~s~~~dg~i------------~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~ 564 (1015)
+.++..+. ++.++.+.+. .....+.....|..+ +-+.+.+.... ..+......-.++.+++.|.
T Consensus 95 lkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 98887443 3333332110 000111122222111 11111110000 00000011135678888888
Q ss_pred EEEEEeeCCCCCceEEEEeCCCCee---eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CceeEEEecC
Q 001776 565 RLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--VNLLASIDAD 639 (1015)
Q Consensus 565 ~l~~~~~d~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~ 639 (1015)
+.+..... .+.+|+..++.. .+....++...+++.+++|++++++++..||.|.+|.--. +........|
T Consensus 174 ~~~i~~~~-----~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 174 FKGIVHMC-----KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLH 248 (792)
T ss_pred EEEEEEee-----eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEE
Confidence 87777644 388898877541 1122223333578899999999999999999999996433 2222222234
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccc
Q 001776 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGER 719 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1015)
-|...|++++|+++|.+|.+|+..|.+.+|.+.++++.+ -
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf---L------------------------------------- 288 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF---L------------------------------------- 288 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCccc---c-------------------------------------
Confidence 557899999999999999999999999999998873211 0
Q ss_pred cccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcE
Q 001776 720 TAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAV 799 (1015)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~ 799 (1015)
| .-.+.|..+.+|||+...+...+|..
T Consensus 289 ---------------------------------------------------P--RLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 289 ---------------------------------------------------P--RLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred ---------------------------------------------------c--ccCCeeEEEEEcCCCCeEEEEecCce
Confidence 0 13467899999999999999999999
Q ss_pred EEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeE
Q 001776 800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT 878 (1015)
Q Consensus 800 i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~ 878 (1015)
|.+-....-+.. .++.-..+.+... -+ ...+-.+.++++|.-+.++..+ .|.|.+||+.+-+.+.
T Consensus 316 I~li~~~dl~~k--------~tIsgi~~~~~~~----k~--~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 316 IHLIKASDLEIK--------STISGIKPPTPST----KT--RPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred EEEEeccchhhh--------hhccCccCCCccc----cc--cccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence 988765422110 0010011111110 00 1345567788999544555444 8999999997766554
Q ss_pred EeC-----CC------CCCeeEEEEcCCCCcEEEEEE--------cCC--eEEEEEcccceE----EEE-EcCccCCeEE
Q 001776 879 TFM-----PP------PPAATFLAFHPQDNNIIAIGM--------EDS--SIQIYNVRVDEV----KTK-LKGHQKRITG 932 (1015)
Q Consensus 879 ~l~-----~~------~~~i~~l~~sp~d~~~la~g~--------~dg--~v~vwd~~~~~~----~~~-l~~h~~~v~~ 932 (1015)
.+. .+ .-.+++++.+- .|.+++++- .|| .+++|-...... ... ...|...+..
T Consensus 382 ~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~va 460 (792)
T KOG1963|consen 382 KLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVA 460 (792)
T ss_pred eEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEE
Confidence 432 11 22478888888 699999874 333 678897664432 222 2347776666
Q ss_pred EEEeC-CC-CEEEEEeCCCcEEEEEccCccc-----ccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001776 933 LAFSN-TL-NVLVSSGADSQLCVWSTDGWEK-----QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 1005 (1015)
Q Consensus 933 l~~sp-dg-~~l~s~s~dg~v~vWd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~ 1005 (1015)
.++.+ .. ..+++++.||.+++|-+.+.+. ..+.+..+..- |..++++++||.||..|+++.|++|.+||.
T Consensus 461 t~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 461 TIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVSFDDTITIWDY 537 (792)
T ss_pred EEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc---ccCcccchhhcCCCcEEEEecCCEEEEecC
Confidence 66653 33 3899999999999999844332 23434443332 336799999999999999999999999999
Q ss_pred CC-ceEe
Q 001776 1006 PK-LECL 1011 (1015)
Q Consensus 1006 ~~-g~~l 1011 (1015)
.+ .+.+
T Consensus 538 ~~~~~l~ 544 (792)
T KOG1963|consen 538 DTKNELL 544 (792)
T ss_pred CChhhhh
Confidence 88 4443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-25 Score=202.86 Aligned_cols=254 Identities=17% Similarity=0.259 Sum_probs=209.2
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEec--CCCceEEEEEeCCCeEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY--PNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~--~~~~~~l~s~s~dg~v~ 490 (1015)
+...|.+.|..+...--|++||||+.|++|+|+.+..+.....+.+|.+|.++|+.++|.. -|. +|++++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 3568999999999999999999999999999999998776666778999999999999987 677 899999999999
Q ss_pred EEEcCCCce--EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc---eeeecCCCCceEEEEECCC---
Q 001776 491 VWDAVTGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSAD--- 562 (1015)
Q Consensus 491 vwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~--- 562 (1015)
||.-.+|+- ...+..|...|++++|.|.+-|-.|++++.||.|.+.+++.... ......|.-.+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999877743 45677899999999999999999999999999999999887622 2344567778999999986
Q ss_pred C-----------CEEEEEeeCCCCCceEEEEeCCCCe--eeEEeeCCCCCCeEEEEEeCCC----CEEEEEeCCCcEEEE
Q 001776 563 G-----------ARLFSCGTNKEGESYLVEWNESEGA--VKRTYHGLGKRSVGVVQFDTTK----NRFLAAGDEFMIKFW 625 (1015)
Q Consensus 563 ~-----------~~l~~~~~d~~~~~~i~iwd~~~~~--~~~~~~~~~~~~i~~v~~~~~~----~~l~~~~~dg~i~vw 625 (1015)
| +.|++++.|. .+++|+...+. ..+++.+|.+ .++.++|.|.- ..|++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn----~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDN----LVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCCcc----ceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 5688887644 69999988763 4456888887 89999999964 589999999999999
Q ss_pred eCCCC-ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001776 626 DMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 626 d~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
..+.. +.-...-.+.....+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 87632 1111111222356789999999999999999999999997543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-21 Score=209.00 Aligned_cols=278 Identities=15% Similarity=0.215 Sum_probs=224.1
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcc-eEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCC
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE-RIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (1015)
..|+..-+.++|.|+|. .+.+++.||.|++|+..+.. ... .+.-+...|.+++. ++.
T Consensus 10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~-------------------ti~~~g~~v~~ia~--~s~ 67 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPE-------------------TIDISGELVSSIAC--YSN 67 (933)
T ss_pred hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCc-------------------hhhccCceeEEEee--ccc
Confidence 45888899999999999 78999999999999976652 111 12236777877776 455
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
+|++|+.+++|.+|...+++.-. .+....-++.+++|+.+|+ +++.||.|-.|++-++.+......+++|.++|.
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence 99999999999999999876433 3444567899999999999 899999999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC--------CCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
++.|+|.+ .+|++.+.||.|++||+.++.....+..- ...+..++|+|+|..+++.+.++ .|.+|+
T Consensus 143 ~l~~~p~~--~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----~Vkvy~ 216 (933)
T KOG1274|consen 143 QLSYDPKG--NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN----TVKVYS 216 (933)
T ss_pred eeeEcCCC--CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----eEEEEc
Confidence 99986654 79999999999999999987665543321 23567899999987777776544 599999
Q ss_pred CCCCeeeEEeeCCCCC-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeC
Q 001776 584 ESEGAVKRTYHGLGKR-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~-~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 662 (1015)
..++.....+...... .+..+.|+|+|.||++++.||.|.|||.++.+. |.....|.+++|.|+...+-....
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEee
Confidence 9999888887765433 388899999999999999999999999988222 334567999999998877765555
Q ss_pred CCcEEEE
Q 001776 663 DNGIKIL 669 (1015)
Q Consensus 663 dg~i~iw 669 (1015)
.|...+|
T Consensus 291 ~g~~~~~ 297 (933)
T KOG1274|consen 291 LGTLGVS 297 (933)
T ss_pred ccccccC
Confidence 5555554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=220.17 Aligned_cols=293 Identities=16% Similarity=0.210 Sum_probs=235.1
Q ss_pred eeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
..+++|.|..-|.++.+|...+ .++||+. |.|+|||+....-.. +....-......-|+++...
T Consensus 411 rq~~tL~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEec
Confidence 3567788999999999999998 5788876 779999986532110 00000022345789999999
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~ 507 (1015)
|||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+ +.++|..||.|.|||+.+...++.|+||+
T Consensus 475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence 9999999999999999999987643 22223444445688899999999 89999999999999999999999999999
Q ss_pred CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
..+.||.++ .+|..|.+|+.|++||.||++++........ ...|.++..+|++.+++++-.++ .+.+.... +
T Consensus 552 DGascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMens----~vevlh~s-k 623 (705)
T KOG0639|consen 552 DGASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGMENS----NVEVLHTS-K 623 (705)
T ss_pred CCceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecccC----cEEEEecC-C
Confidence 999999885 4557999999999999999998877766554 45899999999999999986543 36555543 3
Q ss_pred eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001776 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1015)
Q Consensus 588 ~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 667 (1015)
.....+..|.. .|.++.|.+.|+++++.|.|.-+..|....|..+..... ...|.++.++.|.+++++|+.|..-.
T Consensus 624 p~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 624 PEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKAT 699 (705)
T ss_pred ccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceE
Confidence 33444555555 899999999999999999999999999998887766643 56899999999999999999998888
Q ss_pred EEEc
Q 001776 668 ILAN 671 (1015)
Q Consensus 668 iw~~ 671 (1015)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8864
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-24 Score=210.31 Aligned_cols=241 Identities=17% Similarity=0.273 Sum_probs=213.4
Q ss_pred CCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 418 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
...+.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+++.. .+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeeccccc
Confidence 3578888888888899999999999999999988776 8999999999999999998 7999999999999999888
Q ss_pred ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC--CCceEEEEECCCCCEEEEEeeCCCC
Q 001776 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP--GHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 498 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
........|..+|+.+..++.+ .++++++.|++..+.|++++......... .-.+++.+|+|||-.+.++..|+
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tg--eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~-- 369 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTG--EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG-- 369 (506)
T ss_pred cCccccccccccceeeeeccCC--cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc--
Confidence 8888888999999999887665 79999999999999999998887766553 23689999999999999887644
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
.+++||+.++..+..|.+|.. +|..++|+.+|-+++++.+|+.|++||++..+...++...... .+.++.|.+.|.
T Consensus 370 --~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 370 --VVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred --eEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCC
Confidence 699999999999999999887 9999999999999999999999999999999988888876543 789999999999
Q ss_pred EEEEEeCCCcEEEEEc
Q 001776 656 LLAVSTNDNGIKILAN 671 (1015)
Q Consensus 656 ~l~~~~~dg~i~iw~~ 671 (1015)
+|+.++.|=.|++++-
T Consensus 446 ~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKK 461 (506)
T ss_pred eEEeecceeEEEEEec
Confidence 9999977766666553
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=230.48 Aligned_cols=228 Identities=16% Similarity=0.229 Sum_probs=181.1
Q ss_pred EECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecC-CCceEEEEEeCCCeEEEEEcCCCc--------eEEEeeCC
Q 001776 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP-NKQLSVVTCGEDRVIKVWDAVTGT--------KQYIFEGH 506 (1015)
Q Consensus 436 ~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~-~~~~~l~s~s~dg~v~vwd~~~~~--------~~~~~~~h 506 (1015)
|+.++.|++|+......+. .+.+|.+.|.+++|+|+ +. +|++|+.|++|++||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~---~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVI---KLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceEE---EEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5678889999987654333 78899999999999997 55 89999999999999997642 34567899
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
...|.+++|+|... .++++++.|++|++||+++......+. +...|.+++|+|+|..|++++.|+ .|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~----~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGK----HMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCC----EEEEEECCC
Confidence 99999999988653 356799999999999999887666554 456899999999999999887544 699999999
Q ss_pred CeeeEEeeCCCCCC----eEEEEEeCCCCEEEEEeCCC----cEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEE
Q 001776 587 GAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEF----MIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILL 657 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~----i~~v~~~~~~~~l~~~~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l 657 (1015)
++.+..+.+|.+.. +....|++++.+++++|.|+ .|++||+++ ++++..+..+.+...+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 99999999887622 12223568999999988664 799999995 6677766655444433334445568899
Q ss_pred EEEeCCCcEEEEEccCC
Q 001776 658 AVSTNDNGIKILANADG 674 (1015)
Q Consensus 658 ~~~~~dg~i~iw~~~~~ 674 (1015)
++|+.|+.|++|++..+
T Consensus 279 lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEECCCeEEEEEccCC
Confidence 99999999999999766
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=218.58 Aligned_cols=283 Identities=17% Similarity=0.247 Sum_probs=225.8
Q ss_pred eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcce-EEEcC-CCCEEEEEeCCCc
Q 001776 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC-IRFNK-EGILLAVSTNDNG 665 (1015)
Q Consensus 588 ~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~-v~~s~-~~~~l~~~~~dg~ 665 (1015)
++.+.+.+|.. .+..+++.+. ..++++|.||++++|+-..++.+......++.+.|.+ +++-+ ++..+++|+.|++
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCcc-chheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45677888887 6777776544 5899999999999999887777665544444555555 77775 5567999999999
Q ss_pred EEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccc
Q 001776 666 IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIAD 745 (1015)
Q Consensus 666 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 745 (1015)
|.+|...+. .++..+.
T Consensus 83 i~v~~~~~~-~P~~~Lk--------------------------------------------------------------- 98 (745)
T KOG0301|consen 83 IIVFKLSQA-EPLYTLK--------------------------------------------------------------- 98 (745)
T ss_pred EEEEecCCC-Cchhhhh---------------------------------------------------------------
Confidence 999988766 3333333
Q ss_pred ccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceec
Q 001776 746 EAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLW 825 (1015)
Q Consensus 746 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 825 (1015)
+|...|.++....++. +++|+.|.++++|....
T Consensus 99 ----------------------------gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------------------ 131 (745)
T KOG0301|consen 99 ----------------------------GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------------------ 131 (745)
T ss_pred ----------------------------ccccceeeeecCCcCc-eEecccccceEEecchh------------------
Confidence 3677788888888887 99999999999996431
Q ss_pred CCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEE
Q 001776 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 826 d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~ 904 (1015)
+.. .+.+ |...|++++.-|++ .+++|+ |.+|++|.- ++.+++|.+|...|+.+++-+ ++ .+++++
T Consensus 132 ------l~~-~l~g--H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~-~flScs 197 (745)
T KOG0301|consen 132 ------LVY-SLQG--HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DS-HFLSCS 197 (745)
T ss_pred ------hhc-ccCC--cchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CC-CeEeec
Confidence 111 1444 99999999999998 666776 999999985 789999999999999999997 54 567899
Q ss_pred cCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEE
Q 001776 905 EDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQ 984 (1015)
Q Consensus 905 ~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 984 (1015)
.||.|+.|++ +|+++.++.||++-|.+++...++..++++++|+++++|+.. ++. .++..+. -.|+++.
T Consensus 198 NDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~--q~I~lPt------tsiWsa~ 266 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV--QVITLPT------TSIWSAK 266 (745)
T ss_pred CCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE--EEEecCc------cceEEEE
Confidence 9999999998 789999999999999999988889999999999999999987 322 2233332 3489999
Q ss_pred EccCCCEEEEEeCCeEEEEEcCCc
Q 001776 985 FHLDQTHLLAVHETQIAIYEAPKL 1008 (1015)
Q Consensus 985 fs~dg~~l~~~~d~~i~vwd~~~g 1008 (1015)
+-++|..++.|+||.|+||....-
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EeeCCCEEEeccCceEEEEEeccc
Confidence 999999888889999999988643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-23 Score=197.49 Aligned_cols=248 Identities=16% Similarity=0.245 Sum_probs=203.4
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC--EEEEEeCCCcEE
Q 001776 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGIK 667 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~ 667 (1015)
...+..|.. .+++++++ +.++++||.|-+|+|||+.....+..+-.| .+.|+++.|.++-. .|++|++||.|.
T Consensus 36 lF~~~aH~~-sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~H--agsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAG-SITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSH--AGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred ccccccccc-ceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecc--ccceEEEEecCCcchhheeeecCCCcEE
Confidence 345566665 89998885 789999999999999999999988888876 67899999999765 899999999999
Q ss_pred EEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccc
Q 001776 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1015)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1015)
+|+...- .++..+.+
T Consensus 111 iw~~~~W-~~~~slK~---------------------------------------------------------------- 125 (362)
T KOG0294|consen 111 IWRVGSW-ELLKSLKA---------------------------------------------------------------- 125 (362)
T ss_pred EEEcCCe-EEeeeecc----------------------------------------------------------------
Confidence 9998765 44444432
Q ss_pred ccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCC
Q 001776 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1015)
Q Consensus 748 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1015)
|.+.|+.++++|.|+..++.+.|+.+++||+-++..
T Consensus 126 ---------------------------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~----------------- 161 (362)
T KOG0294|consen 126 ---------------------------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV----------------- 161 (362)
T ss_pred ---------------------------cccccceeEecCCCceEEEEcCCceeeeehhhcCcc-----------------
Confidence 666789999999999999999999999998764311
Q ss_pred CCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCC
Q 001776 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS 907 (1015)
Q Consensus 828 ~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg 907 (1015)
+..+. -....+.+.|+|.|.+++.+....|-+|.+++......+.. ...+.|+.|. ++..|++|++|+
T Consensus 162 --a~v~~-------L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 162 --AFVLN-------LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNE 229 (362)
T ss_pred --ceeec-------cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCc
Confidence 11111 12233448999999999999999999999988777766653 3567788886 577999999999
Q ss_pred eEEEEEcccceEEEEEcCccCCeEEEEEe--CCCCEEEEEeCCCcEEEEEccCccccc
Q 001776 908 SIQIYNVRVDEVKTKLKGHQKRITGLAFS--NTLNVLVSSGADSQLCVWSTDGWEKQA 963 (1015)
Q Consensus 908 ~v~vwd~~~~~~~~~l~~h~~~v~~l~~s--pdg~~l~s~s~dg~v~vWd~~~~~~~~ 963 (1015)
.|.+||.+++.+...+.+|..+|.++.+- |++.+|+|+|.||.|+|||++......
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~ 287 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKR 287 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCC
Confidence 99999999999999999999999999853 778999999999999999999864443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.2e-22 Score=179.92 Aligned_cols=250 Identities=17% Similarity=0.194 Sum_probs=199.6
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccC------Cce------eeeeeEEecccCceeEEEEecCCCceEEEE
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG------GDE------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVT 482 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~------~~~------~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s 482 (1015)
...+..|.+++|.|.|.+.|+|++..+.+|--... +-. ......-+.|.+.|.|.+|+|+|. +|++
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat 106 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT 106 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence 34567899999999999999999999988864321 110 111123456899999999999999 8999
Q ss_pred EeCCCeEEEEEcCCCce-----EEEeeCCCCCEEEEeecccC--CccEEEEEe-CCCeEEEEeCCCCCceeeecCCCCce
Q 001776 483 CGEDRVIKVWDAVTGTK-----QYIFEGHESPVYSICPHHKE--NIQFIFSTA-TDGKIKAWLYDNLGSRVDYDAPGHSS 554 (1015)
Q Consensus 483 ~s~dg~v~vwd~~~~~~-----~~~~~~h~~~v~~i~~~~~~--~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~i 554 (1015)
|+.|++|++.-.....+ -.+|.-|.+.|..++|..++ .+.+|++++ .|..|++-|...+.....+.+|.+.|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999976554332 24677899999999986543 456677665 46678888888888888888888877
Q ss_pred EEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCC------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 555 ~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~------~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
.++ ++-+|-++++++.|+ +|+.||++-..++.++... ....|.++++.|.|+.+++|-.|....+||++
T Consensus 187 lal-yswn~~m~~sgsqdk----tirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir 261 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDK----TIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR 261 (350)
T ss_pred EEE-EEecCcEEEccCCCc----eEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee
Confidence 665 455677888887654 6999999988888776432 22468899999999999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccC
Q 001776 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
.++.++.+..| ...|.|+.|+|...++.+++.|..|++-|+..
T Consensus 262 g~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 262 GGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred CCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999998766 77999999999999999999999999988764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=210.68 Aligned_cols=242 Identities=14% Similarity=0.166 Sum_probs=200.2
Q ss_pred eEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCC
Q 001776 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476 (1015)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~ 476 (1015)
+.+|.+.++....+..+ -.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.||.
T Consensus 63 l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs 136 (476)
T KOG0646|consen 63 LHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS 136 (476)
T ss_pred ccccccCchhhhhhhcc---cccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc
Confidence 34555555444332222 34689999999999999999999999999999999877 6789999999999999999
Q ss_pred ceEEEEEeCCCeEEEEEcC---------CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeee
Q 001776 477 QLSVVTCGEDRVIKVWDAV---------TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (1015)
Q Consensus 477 ~~~l~s~s~dg~v~vwd~~---------~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 547 (1015)
+|+|||.||.|.+|++. +-++++.|..|+-+|+++...+.+...++++++.|.++++||+..+.....+
T Consensus 137 --~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 137 --HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred --EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 89999999999999863 3467789999999999999877766679999999999999999988776666
Q ss_pred cCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC----------------CeeeEEeeCCCC-CCeEEEEEeCCC
Q 001776 548 DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----------------GAVKRTYHGLGK-RSVGVVQFDTTK 610 (1015)
Q Consensus 548 ~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~i~~v~~~~~~ 610 (1015)
.. ...+.+++.+|.++.+++|+.++ .|.+.++.. +..+..+.+|.+ ..|++++++-||
T Consensus 215 ~f-p~si~av~lDpae~~~yiGt~~G----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 215 TF-PSSIKAVALDPAERVVYIGTEEG----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred ec-CCcceeEEEcccccEEEecCCcc----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 54 45899999999999999987654 476665432 234566777765 579999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001776 611 NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
..|++|+.||+|+|||+.+.++++++... .++|+.+.+.|-
T Consensus 290 tlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 290 TLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 99999999999999999999999888743 568898888764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=196.95 Aligned_cols=297 Identities=13% Similarity=0.174 Sum_probs=222.6
Q ss_pred CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEE
Q 001776 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1015)
Q Consensus 346 ~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1015)
|.++..++.+.. -.|+.|++.|. +||+|..||.|.|||+.+...-+ ++.+|..+|++++
T Consensus 14 PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 14 PEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSLC 72 (405)
T ss_pred hHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchhh-------------------hhhccccceeEEE
Confidence 456667788766 89999999999 88999999999999998866333 4889999999999
Q ss_pred EccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeC
Q 001776 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 426 ~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 505 (1015)
||+||+.|++++.|..|.+||+..|.+++... ...+|+.+.|+|...+. .+.+-.+..-.+-++..++...--..
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~rir----f~spv~~~q~hp~k~n~-~va~~~~~sp~vi~~s~~~h~~Lp~d 147 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR----FDSPVWGAQWHPRKRNK-CVATIMEESPVVIDFSDPKHSVLPKD 147 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEEE----ccCccceeeeccccCCe-EEEEEecCCcEEEEecCCceeeccCC
Confidence 99999999999999999999999998776432 67899999999988773 44444444455555544322111111
Q ss_pred CCCC--EEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC-CceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 506 HESP--VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 506 h~~~--v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
..+. +.+-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|+.++..+.|+ .|+.|
T Consensus 148 ~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR----vIR~y 223 (405)
T KOG1273|consen 148 DDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR----VIRTY 223 (405)
T ss_pred CccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc----eEEEE
Confidence 1111 111111235566899999999999999999988887776655 6889999999999999987654 79999
Q ss_pred eCCCC-------ee--eEEeeCC-CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001776 583 NESEG-------AV--KRTYHGL-GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 583 d~~~~-------~~--~~~~~~~-~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1015)
+++.- +. .+++..- ....-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....+.|+
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~wh 302 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWH 302 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccc
Confidence 87621 11 1111110 112345689999999999887 556799999999999999987643 356688999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 001776 652 KEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 652 ~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
|-...+++. ..|.+++|.....
T Consensus 303 p~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 303 PVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cceeeeeec-cCCceEEEEeecc
Confidence 988888877 7889999987543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=192.70 Aligned_cols=301 Identities=15% Similarity=0.255 Sum_probs=228.8
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (1015)
.|.+.|.++...+...+++++|+.||.|.|||++........-+-. ...|. .......+|+-.|..+.|-| |.-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~--k~~c~--v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIA--KHKCI--VAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcccee--heeee--ccccCCccceeeeeeeEEeeecCce
Confidence 4889999999999776799999999999999997654211100000 00011 11112467999999999999 7778
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCC-ceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK-QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~ 511 (1015)
+.+++.|.+++|||..+-+... .|+ ..+.|.+-++||-.. +.++++|..|-.|++.|+.+|.+.+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8899999999999999866544 333 556788888888543 44788888999999999999999999999999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCC-Cceee--------------ecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVD--------------YDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~--------------~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
++.|+|..+ -.|++|+.||.|++||++.. .+... ...|.+.+++++|+.++.++++++.|.
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~--- 268 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD--- 268 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc---
Confidence 999998775 57899999999999999765 22222 233556899999999999999998744
Q ss_pred ceEEEEeCCCCeeeEEeeC---CCC--C-CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001776 577 SYLVEWNESEGAVKRTYHG---LGK--R-SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~---~~~--~-~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
.+++|+...|+-...-.+ +.. . .+. +. +.+...++.--.++.+.++++-.+..+..+..| ...+.|.++
T Consensus 269 -r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h--~k~i~c~~~ 343 (397)
T KOG4283|consen 269 -RIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH--LKRINCAAY 343 (397)
T ss_pred -ceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecc--cceeeEEee
Confidence 699999988753221111 111 0 111 22 334445555556799999999999999999987 568999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEc
Q 001776 651 NKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 651 s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
.|+-+...++..|+.|..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-23 Score=208.93 Aligned_cols=266 Identities=12% Similarity=0.224 Sum_probs=212.4
Q ss_pred eeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
+....+.|.+.|+.+.+-|+...++|+++..+.|.|||...-.-.... .+.......+.+|+..=+.++|+
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn 186 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN 186 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence 455667799999999999999999999999999999998754322210 00011222478899988999999
Q ss_pred cC-CCEEEEEECCCeEEEEEccCCce----eeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC--CCceE
Q 001776 428 PD-GTLFGVAYSKHIVHLYTYHGGDE----LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV--TGTKQ 500 (1015)
Q Consensus 428 pd-g~~las~~~dg~v~iwd~~~~~~----~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~--~~~~~ 500 (1015)
+. .-.|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.
T Consensus 187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence 94 45899999999999999986433 5556678999999999999998877 79999999999999999 55666
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
....+|.+.|++++|+|..+ .+|++|+.|++|.+||+++... ...+..|...|..+.|+|....+++.+. .++.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 78889999999999998764 7999999999999999998654 5678889999999999998776555442 25579
Q ss_pred EEEeCCCCe--------------eeEEeeCCCCCCeEEEEEeCCCCEE-EEEeCCCcEEEEeCC
Q 001776 580 VEWNESEGA--------------VKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMD 628 (1015)
Q Consensus 580 ~iwd~~~~~--------------~~~~~~~~~~~~i~~v~~~~~~~~l-~~~~~dg~i~vwd~~ 628 (1015)
.+||+..-. ++..-.||.. .|..+.|+|+..++ ++.++|+.+.||.+.
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999986421 2344456665 89999999998765 456799999999875
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=206.42 Aligned_cols=289 Identities=16% Similarity=0.204 Sum_probs=219.7
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
..+.+||+++|.....+++.....-.++..- .+.+++++. .-..|.+|.+.......... --.++|.+++-+|+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~--v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYI--VLPGPVHALASSNLGY 94 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhc--ccccceeeeecCCCce
Confidence 3489999999999988887622121112111 235677766 55689999987665554222 1245789999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCC
Q 001776 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRN 735 (1015)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 735 (1015)
+|+.|+..|.|++|.+.+| .++..+.
T Consensus 95 ~l~ag~i~g~lYlWelssG-~LL~v~~----------------------------------------------------- 120 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSG-ILLNVLS----------------------------------------------------- 120 (476)
T ss_pred EEEeecccCcEEEEEeccc-cHHHHHH-----------------------------------------------------
Confidence 9999999999999999999 4443332
Q ss_pred CcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCc
Q 001776 736 FTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGK 815 (1015)
Q Consensus 736 ~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~ 815 (1015)
.|-..|+++.|+.||..+++++.||.|.+|.+..-
T Consensus 121 --------------------------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l------- 155 (476)
T KOG0646|consen 121 --------------------------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL------- 155 (476)
T ss_pred --------------------------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-------
Confidence 27788999999999999999999999999987532
Q ss_pred eecccCceecCCCCCc--cccccCCCCCCCCCccEEEEccC--CCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEE
Q 001776 816 ATTNQAPQLWQPPSGI--LMTNDISDTNPEDAVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFL 890 (1015)
Q Consensus 816 ~~~~~~~~~~d~~~~~--~~~~~l~~~~~~~~v~~l~~s~d--g~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l 890 (1015)
.+..... .....+.+ |.-+|+++...+. ..+|++++ |.++++||+..+.++.++. ....+.++
T Consensus 156 ---------v~a~~~~~~~p~~~f~~--HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av 223 (476)
T KOG0646|consen 156 ---------VSADNDHSVKPLHIFSD--HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAV 223 (476)
T ss_pred ---------cccccCCCccceeeecc--CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeE
Confidence 1111111 11112344 8899999988765 45888888 9999999999999998877 56789999
Q ss_pred EEcCCCCcEEEEEEcCCeEEEEEcccc----------------eEEEEEcCccC--CeEEEEEeCCCCEEEEEeCCCcEE
Q 001776 891 AFHPQDNNIIAIGMEDSSIQIYNVRVD----------------EVKTKLKGHQK--RITGLAFSNTLNVLVSSGADSQLC 952 (1015)
Q Consensus 891 ~~sp~d~~~la~g~~dg~v~vwd~~~~----------------~~~~~l~~h~~--~v~~l~~spdg~~l~s~s~dg~v~ 952 (1015)
+.+| .+..+.+|+.+|.|.+.++... ..+..+.||.+ +|+|++++-||.+|++|+.||.|+
T Consensus 224 ~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 224 ALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 9999 9999999999999999887532 34567789999 999999999999999999999999
Q ss_pred EEEccCcccccceEEEecCCCccccCCceEEEEccC
Q 001776 953 VWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1015)
Q Consensus 953 vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1015)
|||+.+.++++. ..... ++|+.+.+.|=
T Consensus 303 vWdi~S~Q~iRt-----l~~~k---gpVtnL~i~~~ 330 (476)
T KOG0646|consen 303 VWDIYSKQCIRT-----LQTSK---GPVTNLQINPL 330 (476)
T ss_pred EEecchHHHHHH-----Hhhhc---cccceeEeecc
Confidence 999998765432 22111 56888888554
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=202.66 Aligned_cols=289 Identities=13% Similarity=0.235 Sum_probs=226.8
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc--eeeecCCCCceEEEEECCCCC-EEEEEeeCCCCCceEEEEe
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd 583 (1015)
.++|+++.|+|.. .++++++.|+++++|.++.... +..+.....+|.+.+|.|+|. .+++++. ..+++.||
T Consensus 213 ~~~I~sv~FHp~~--plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r----rky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTA--PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR----RKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCC--ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc----ceEEEEee
Confidence 4679999998877 7999999999999998875433 444555677999999999999 6666654 55899999
Q ss_pred CCCCeee--EEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 584 ESEGAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 584 ~~~~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
+.+++.. ....++....+....+++++++|+..|..|.|++....+++.+.++... +.|..++|+.+++.|++++
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie---G~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE---GVVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec---cEEeeEEEecCCcEEEEEc
Confidence 9988654 3445555556778899999999999999999999999999999999874 4689999999999999999
Q ss_pred CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccc
Q 001776 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741 (1015)
Q Consensus 662 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1015)
.+|.|++||+... .++..+...
T Consensus 364 ~~GeV~v~nl~~~-~~~~rf~D~--------------------------------------------------------- 385 (514)
T KOG2055|consen 364 GTGEVYVWNLRQN-SCLHRFVDD--------------------------------------------------------- 385 (514)
T ss_pred CCceEEEEecCCc-ceEEEEeec---------------------------------------------------------
Confidence 9999999999877 444333210
Q ss_pred ccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccC
Q 001776 742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQA 821 (1015)
Q Consensus 742 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 821 (1015)
..-.-++++.|++|.++|+|+..|.|-||+...-..+
T Consensus 386 ---------------------------------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s---------- 422 (514)
T KOG2055|consen 386 ---------------------------------GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS---------- 422 (514)
T ss_pred ---------------------------------CccceeeeeecCCCceEEeccCcceEEEeccchhhcc----------
Confidence 0011257888999999999999999999986532111
Q ss_pred ceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc---CCeEEEEeCCCCceeEEeCCCC---CCeeEEEEcCC
Q 001776 822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPP---PAATFLAFHPQ 895 (1015)
Q Consensus 822 ~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~l~~~~---~~i~~l~~sp~ 895 (1015)
.+.+++.. +. .-...|+++.|+||.++||.++ ...+++-.+.+......+.... +.++|++|||
T Consensus 423 ------~~PkPik~-~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP- 492 (514)
T KOG2055|consen 423 ------TNPKPIKT-VD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP- 492 (514)
T ss_pred ------CCCCchhh-hh--hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-
Confidence 11111111 11 1466899999999999999998 4779999998877766665443 4689999999
Q ss_pred CCcEEEEEEcCCeEEEEEcc
Q 001776 896 DNNIIAIGMEDSSIQIYNVR 915 (1015)
Q Consensus 896 d~~~la~g~~dg~v~vwd~~ 915 (1015)
.+.++|.|..+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 89999999999999999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=203.71 Aligned_cols=289 Identities=13% Similarity=0.216 Sum_probs=232.4
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCC-EE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT-LF 433 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~l 433 (1015)
-.++|+++.|+|..+ +|.+++.||+++||.++........+ +.--..+|.+.+|.|+|. .+
T Consensus 212 s~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i 273 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVI 273 (514)
T ss_pred CcCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEE
Confidence 357899999999999 88999999999999997654322111 122357999999999999 89
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEeccc-CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
++++.....+.||+.+.+..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..
T Consensus 274 ~~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 274 FTSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred EecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 999999999999999877443 22344444 4577788999999 89999999999999999999999887 5678999
Q ss_pred EeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC-ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC-----
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----- 586 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~----- 586 (1015)
++|+ .+++.|++++.+|.|.+||++...+...+...+. .-++++.++++.++++|+. .+.|.|||..+
T Consensus 350 ~~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 350 FTFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFAST 423 (514)
T ss_pred EEEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccC
Confidence 9997 4558899999999999999999888777766554 4567888999999999975 44799999653
Q ss_pred -CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecC-CCCCCcceEEEcCCCCEEEEEeC
Q 001776 587 -GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 587 -~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~ 662 (1015)
.+++..+..... .|+++.|+++++.++.+| .+..+++-++.+......+... .....|+|++|+|.+.++|.|..
T Consensus 424 ~PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 424 NPKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 355555555554 799999999999999888 6778999998876655555432 22456899999999999999999
Q ss_pred CCcEEEEEcc
Q 001776 663 DNGIKILANA 672 (1015)
Q Consensus 663 dg~i~iw~~~ 672 (1015)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999864
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=189.78 Aligned_cols=251 Identities=18% Similarity=0.244 Sum_probs=201.0
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CCCE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~ 432 (1015)
|.+.|..+...--|+ .|||+++|++|+|+.++.+.... ....|.||.++|..++|.. -|..
T Consensus 10 H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence 888888888888898 67999999999999998765411 1112789999999999976 8999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-c--eEEEeeCCCCC
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-T--KQYIFEGHESP 509 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~-~--~~~~~~~h~~~ 509 (1015)
||+++.||.|.||.-.+| ...+......|+..|++++|.|.+-.+.|++++.||.|.|.+.++. . .......|.-.
T Consensus 73 LAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred eeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999999999999888 3455556788999999999999988779999999999999988754 2 23455689999
Q ss_pred EEEEeecccCC-c-----------cEEEEEeCCCeEEEEeCCCCCc--eeeecCCCCceEEEEECCCC----CEEEEEee
Q 001776 510 VYSICPHHKEN-I-----------QFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADG----ARLFSCGT 571 (1015)
Q Consensus 510 v~~i~~~~~~~-~-----------~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~----~~l~~~~~ 571 (1015)
|++++|.|..- | ..|++|+.|+.|+||+.+...- ...+..|...++.++|.|.- .+|++++.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 99999987621 1 5699999999999999987532 23477888999999999964 47888877
Q ss_pred CCCCCceEEEEeCCCC--eeeEE-eeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 572 NKEGESYLVEWNESEG--AVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~--~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
|+ .+.||..... ....+ ++... ..+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 232 Dg----~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 DG----TVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred CC----cEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 55 5999976522 11222 22223 378999999999999999999999999754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-22 Score=188.43 Aligned_cols=242 Identities=17% Similarity=0.129 Sum_probs=188.8
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~ 495 (1015)
.....|++|.|+|.+..|++++.||++++||+....... .-.|..++.+++|.++.+ +++|+.||.|+.+|+.
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN 83 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence 356899999999999999999999999999998874333 224999999999998665 8999999999999998
Q ss_pred CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 496 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
++.... +..|..+|.++.+.+.. ..+++|+.|++|++||.+.......+.. ...|.++.. .++.|++++.+.
T Consensus 84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r-- 155 (323)
T KOG1036|consen 84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDR-- 155 (323)
T ss_pred CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCc--
Confidence 877654 44599999999987655 4799999999999999997444444433 336766655 467788876544
Q ss_pred CceEEEEeCCCCeeeE-EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC----ceeEEEecCCC-------CC
Q 001776 576 ESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV----NLLASIDADGG-------LQ 643 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~-------~~ 643 (1015)
.+.+||+++..... .....-...++++++-|++.-+++++-||.|.+=.++.. +....++.|.. ..
T Consensus 156 --~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 156 --KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred --eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 69999998765433 222222336889999999999999999999998776655 33344444421 23
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 644 ASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 644 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+|++++|+|--..+|+|+.||.|.+||+.+.
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcch
Confidence 6899999999899999999999999999776
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-22 Score=191.59 Aligned_cols=253 Identities=13% Similarity=0.214 Sum_probs=194.6
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE
Q 001776 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1015)
Q Consensus 421 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 500 (1015)
..|+.||+.|.+||+|+.||.|.|||+.|-..-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999866444 6889999999999999999 8999999999999999999999
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC----ceEEEEECCCCCEEEEEeeCCCCC
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
+.+. ...+|+.+.|+|......++ .-.+..-.+-++........-..... .-.+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9888 78899999999977644444 43344444555554322221111111 1223458999999999854 5
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-------ce--eEEEecCCCCCCcce
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-------NL--LASIDADGGLQASPC 647 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-------~~--~~~~~~~~~~~~v~~ 647 (1015)
+.+.++|..+-+++..++-.....|..+.++..|++++.-+.|..|+.|+...- ++ .+.++---....-.+
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 679999999999998887766447889999999999999999999999997621 11 111111111234468
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEEccCCceeeeeecCCc
Q 001776 648 IRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRT 685 (1015)
Q Consensus 648 v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~ 685 (1015)
++|+.+|.+++.++ ....++||....| .+++.+.|..
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sLVKILhG~k 292 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIG-SLVKILHGTK 292 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCc-ceeeeecCCc
Confidence 99999999998776 4568999999988 7888777654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-20 Score=201.88 Aligned_cols=509 Identities=14% Similarity=0.143 Sum_probs=317.8
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCC---CEEEEEE
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG---TLFGVAY 437 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~~ 437 (1015)
...||+|++.++. ..+..|.||...+|+++.. +.+|..+++.+.+.|.. .++.+++
T Consensus 21 ~avfSnD~k~l~~--~~~~~V~VyS~~Tg~~i~~-------------------l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 21 PAVFSNDAKFLFL--CTGNFVKVYSTATGECITS-------------------LEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccccCCcEEEE--eeCCEEEEEecchHhhhhh-------------------cccccCccceeeecCCCccceEEEEEe
Confidence 4568999995544 3567899999999998874 88999999999998854 4778999
Q ss_pred CCCeEEEEEccCCceeeeeeEEecccCceeEEEEec----CCCceEEEEEeCCC------------eEEEEEcCCC--ce
Q 001776 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY----PNKQLSVVTCGEDR------------VIKVWDAVTG--TK 499 (1015)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~----~~~~~~l~s~s~dg------------~v~vwd~~~~--~~ 499 (1015)
.||.|++||...+..++ ++.. ..++..+.+.| ... .+..+..|. .++-+.+.+- ..
T Consensus 80 l~G~I~vwd~~~~~Llk---t~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLK---TFDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCccEEEecCCCcEEEE---EEec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccc
Confidence 99999999999988776 3322 22233333322 111 111111111 1111111110 00
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee----ecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----YDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
...+..|.. -..+.+.+.+ .+.....+..+.+|+......... ...|.-.+++.+++|++++++++..+
T Consensus 154 ~d~~~~~~~-~~~I~~~~~g---e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d--- 226 (792)
T KOG1963|consen 154 GDFLKEHQE-PKSIVDNNSG---EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD--- 226 (792)
T ss_pred hhhhhhhcC-CccEEEcCCc---eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccC---
Confidence 111122322 2334444443 344444556788888876441111 11123357999999999999998654
Q ss_pred CceEEEEeCCC----CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001776 576 ESYLVEWNESE----GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 576 ~~~i~iwd~~~----~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1015)
++|.+|.--. ....+.++-|++ .|.+++|+++|.++++||.+|.+.+|.+.+++ .+-+..- ..+|..+.++
T Consensus 227 -GrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRL--gs~I~~i~vS 301 (792)
T KOG1963|consen 227 -GRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRL--GSPILHIVVS 301 (792)
T ss_pred -CcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-ccccccc--CCeeEEEEEc
Confidence 4699996433 234456777777 89999999999999999999999999999988 3333322 4588999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCC
Q 001776 652 KEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSN 731 (1015)
Q Consensus 652 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (1015)
||+...+....|+.|.+....+. .....+.+......
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl-~~k~tIsgi~~~~~------------------------------------------ 338 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDL-EIKSTISGIKPPTP------------------------------------------ 338 (792)
T ss_pred CCCCeEEEEecCceEEEEeccch-hhhhhccCccCCCc------------------------------------------
Confidence 99999999999999999887665 33333322111000
Q ss_pred CCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCC
Q 001776 732 DSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN 811 (1015)
Q Consensus 732 ~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~ 811 (1015)
+ . .....+-.+.++++|.-+.++..+..|.+.+||+.+...
T Consensus 339 ~-------------------------------~-------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~- 379 (792)
T KOG1963|consen 339 S-------------------------------T-------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST- 379 (792)
T ss_pred c-------------------------------c-------cccccccceeEEEcCCCCceeecCCCceEEEEeccccce-
Confidence 0 0 001233456777888777788888888999888764321
Q ss_pred CCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc---------CC--eEEEEeCCCCc----e
Q 001776 812 STGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---------GG--KISLFNMMTFK----T 876 (1015)
Q Consensus 812 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s---------dg--~i~iwd~~~~~----~ 876 (1015)
.....+...+...+.. .+...+++++.+..|.++++.. || .+++|-..... +
T Consensus 380 -----i~~~~v~~~n~~~~~~--------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L 446 (792)
T KOG1963|consen 380 -----IYKLQVCDENYSDGDV--------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL 446 (792)
T ss_pred -----eeeEEEEeecccCCcc--------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE
Confidence 1111111122222221 1445678888898999999872 33 48899764432 2
Q ss_pred eEE-eCCCCCCeeEEEEcCCCCc-EEEEEEcCCeEEEEEcccc----------eEEEEEcCccCCeEEEEEeCCCCEEEE
Q 001776 877 MTT-FMPPPPAATFLAFHPQDNN-IIAIGMEDSSIQIYNVRVD----------EVKTKLKGHQKRITGLAFSNTLNVLVS 944 (1015)
Q Consensus 877 ~~~-l~~~~~~i~~l~~sp~d~~-~la~g~~dg~v~vwd~~~~----------~~~~~l~~h~~~v~~l~~spdg~~l~s 944 (1015)
... ...|...+...+|.+.... ..++++.||.++||-+.+. .|...-.-|..+++.++||.||..|+
T Consensus 447 ~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla- 525 (792)
T KOG1963|consen 447 NTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA- 525 (792)
T ss_pred EEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE-
Confidence 222 2346655555555432444 8899999999999988432 22222223788999999999996555
Q ss_pred EeCCCcEEEEEccCc-ccccceEEEecCCCccccCCceEEEEcc---CCCEEEEEeCCeEEEEEcCCceEec
Q 001776 945 SGADSQLCVWSTDGW-EKQASKFLTIPNGRTASALADTRVQFHL---DQTHLLAVHETQIAIYEAPKLECLK 1012 (1015)
Q Consensus 945 ~s~dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~fs~---dg~~l~~~~d~~i~vwd~~~g~~l~ 1012 (1015)
++.|++|.+||..+. +.. ....... .++..+.|.. ....+..+..+.+.+|++.++...-
T Consensus 526 ~s~~~~Itiwd~~~~~~l~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 526 VSFDDTITIWDYDTKNELL--CTEGSRN------WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred EecCCEEEEecCCChhhhh--ccccccc------cchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 667888999999883 311 1111111 1233344432 2333444578899999998877654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=205.18 Aligned_cols=281 Identities=15% Similarity=0.273 Sum_probs=224.4
Q ss_pred CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC---eeeEEeeCC-CCCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 001776 549 APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG---AVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKF 624 (1015)
Q Consensus 549 ~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~---~~~~~~~~~-~~~~i~~v~~~~~~~~l~~~~~dg~i~v 624 (1015)
.|+.-|..++++...+++++++. +.|++||+... .++..+... .+..++++...|||+.|++||+-.++.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-----gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-----GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-----CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 35667788899999999999874 45999999754 344444443 3447889999999999999999999999
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccc
Q 001776 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (1015)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1015)
||+....+....+.......+.+++.+||.+..+++..||.|.|||+.+. .+++.
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~~Vrq------------------------ 546 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-TLVRQ------------------------ 546 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-eeeec------------------------
Confidence 99987665444443333346788999999999999999999999998765 33322
Q ss_pred ccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEE
Q 001776 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (1015)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 784 (1015)
T Consensus 547 -------------------------------------------------------------------------------- 546 (705)
T KOG0639|consen 547 -------------------------------------------------------------------------------- 546 (705)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-C
Q 001776 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 863 (1015)
Q Consensus 785 s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-d 863 (1015)
+.| |...+.|+.+++||..|=+|+ |
T Consensus 547 ----------------------------------------------------fqG--htDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 547 ----------------------------------------------------FQG--HTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred ----------------------------------------------------ccC--CCCCceeEEecCCCceeecCCCc
Confidence 222 666777888888888888888 8
Q ss_pred CeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEE
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLV 943 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 943 (1015)
.+|+-||+.+++.+.... ....|.++..+| .+.+|++|-+++.|.|-... +.....+.-|..-|.++.|++.|++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP-~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCC-CccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence 999999998876655433 346799999999 99999999999999998855 555677888999999999999999999
Q ss_pred EEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eCCeEEEEEc
Q 001776 944 SSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEA 1005 (1015)
Q Consensus 944 s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~ 1005 (1015)
+.+.|..+..|...-|.. .++..+. ++|.++..|.|++|+++| .|+...||.+
T Consensus 650 StGkDnlLnawrtPyGas----iFqskE~-----SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGAS----IFQSKES-----SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccccc----eeecccc-----CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999887763 2443332 569999999999999996 7888888876
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=202.65 Aligned_cols=253 Identities=18% Similarity=0.275 Sum_probs=202.8
Q ss_pred cccCCCCEEEEEEccC-CCEEEEEECCCeEEEEEccCCce-------eeeeeEEecccCceeEEEEecCCCceEEEEEeC
Q 001776 414 SSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDE-------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~-------~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~ 485 (1015)
...|.+.|+.+.+-|. ...+|+.+..+.|.|||...... .+....+.+|.+.-..++|++.... .+++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3468999999999994 55677788889999999875322 2223368899998889999998776 7999999
Q ss_pred CCeEEEEEcCCCc-------eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC--CCCceeeecCCCCceEE
Q 001776 486 DRVIKVWDAVTGT-------KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--NLGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 486 dg~v~vwd~~~~~-------~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~ 556 (1015)
|++|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|...+.+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 9999999987532 2457889999999999998766 699999999999999999 45555667788889999
Q ss_pred EEECCCCCE-EEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCcee
Q 001776 557 MAYSADGAR-LFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 557 ~~~s~~~~~-l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 633 (1015)
++|+|-+.+ |++++. +++|.+||++.- ..+.++.+|.+ .|..+.|+|+. ..+++++.|+.+.|||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999996655 455554 446999999975 56788899887 89999999987 56677789999999998643222
Q ss_pred E------------EEecCCCCCCcceEEEcCCCC-EEEEEeCCCcEEEEEccC
Q 001776 634 A------------SIDADGGLQASPCIRFNKEGI-LLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 634 ~------------~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iw~~~~ 673 (1015)
+ .+...+|...|..+.|+|+.. .++++++|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1 244446788999999999764 577888999999998864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-20 Score=201.32 Aligned_cols=292 Identities=13% Similarity=0.153 Sum_probs=213.3
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEE-EEEeCCCeEEEEeCCCCCceeeecCCCCceEEE
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 557 (1015)
++++++.|+.+++||+.+++.+..+..+.. +.+++|++++ ..+ ++++.++.|++||..+.+....+..+ ..+..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDG--KLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCC--CEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEE
Confidence 688999999999999999999988886654 5678886544 555 66778999999999887665544433 345678
Q ss_pred EECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC-cEEEEeCCCCceeEEE
Q 001776 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLLASI 636 (1015)
Q Consensus 558 ~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~ 636 (1015)
+|+|+++.+++++. .++.+.+||+.+++.+..+.... .+..++|+|++..+++++.++ .+.+||..+++....+
T Consensus 79 ~~~~~g~~l~~~~~---~~~~l~~~d~~~~~~~~~~~~~~--~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANE---DDNLVTVIDIETRKVLAEIPVGV--EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcC---CCCeEEEEECCCCeEEeEeeCCC--CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE
Confidence 99999998876643 23479999999988777775432 457799999999999988765 5778899888776655
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccc
Q 001776 637 DADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTS 715 (1015)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1015)
... .....++|+|+++++++++ .++.|++||+.++ +....+..+
T Consensus 154 ~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~------------------------------- 198 (300)
T TIGR03866 154 LVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE------------------------------- 198 (300)
T ss_pred EcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec-------------------------------
Confidence 432 2457899999999886554 6899999999876 222211100
Q ss_pred cccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEec
Q 001776 716 LGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA 795 (1015)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~ 795 (1015)
..+.
T Consensus 199 ----------------------------------------------------------------------~~~~------ 202 (300)
T TIGR03866 199 ----------------------------------------------------------------------IPGV------ 202 (300)
T ss_pred ----------------------------------------------------------------------cccc------
Confidence 0000
Q ss_pred cCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEE--cCCeEEEEeCCC
Q 001776 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSA--SGGKISLFNMMT 873 (1015)
Q Consensus 796 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~--sdg~i~iwd~~~ 873 (1015)
.. .......++|+||+++++++ +++.+.+||..+
T Consensus 203 ~~--------------------------------------------~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 203 HP--------------------------------------------EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cc--------------------------------------------ccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00 01112346788888875544 367899999988
Q ss_pred CceeEEeCCCCCCeeEEEEcCCCCcEEEEE-EcCCeEEEEEcccceEEEEEcCccCCeEEEEEeC
Q 001776 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIG-MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1015)
Q Consensus 874 ~~~~~~l~~~~~~i~~l~~sp~d~~~la~g-~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~sp 937 (1015)
++....+. +...+.+++|+| ++++|+++ ..++.|++||+.+++++.++... ...+.++++|
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 239 YEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 88776654 345789999999 88888876 46899999999999999999865 5568888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-22 Score=198.87 Aligned_cols=295 Identities=17% Similarity=0.221 Sum_probs=223.6
Q ss_pred cCCCeeEEEeccCCC-eEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCE
Q 001776 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (1015)
+.+.|++++|+|... .++|+|+.-|+|-+||+.+.+......+ .+..|+.+|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~---------------~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVY---------------LFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceE---------------EeccCCccccceEecCCChhh
Confidence 788999999999876 7999999999999999974443322111 2678999999999999 6678
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce-EEEeeCCCCCEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~h~~~v~ 511 (1015)
+.+.+.||+|+.-|++++.. .....+..-...+..+.|+.+.. .++.+..=|.+.+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 99999999999999987642 22223333556788899998888 677888778999999997655 566777889999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCce----eeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC--
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-- 585 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~-- 585 (1015)
+++++|..+ .++++++.|++.+|||++..... .....|...|.++.|||.+-.|++.+.| ..|++||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D----~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD----NEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC----CceEEeecccc
Confidence 999999776 79999999999999999865443 3345577799999999998888887664 469999983
Q ss_pred --CCeeeEEeeCCCC--C--CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC-EEE
Q 001776 586 --EGAVKRTYHGLGK--R--SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI-LLA 658 (1015)
Q Consensus 586 --~~~~~~~~~~~~~--~--~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~ 658 (1015)
...+...+..... . ......|.|+.++|++|..-..|-|+|-..++.+..+.......-..-..|+|-+. +++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 2233333322111 1 22345899999999999988899999999988887765443222233467999777 455
Q ss_pred EEeCCCcEEEEEcc
Q 001776 659 VSTNDNGIKILANA 672 (1015)
Q Consensus 659 ~~~~dg~i~iw~~~ 672 (1015)
.++..|.|+||-..
T Consensus 482 G~~s~Gki~vft~k 495 (498)
T KOG4328|consen 482 GGNSSGKIYVFTNK 495 (498)
T ss_pred cCCccceEEEEecC
Confidence 55577889988643
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=203.52 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=203.4
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE-EEEECCCeEEEEEccC
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF-GVAYSKHIVHLYTYHG 449 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~dg~v~iwd~~~ 449 (1015)
++++++.||.|++||+.+++.+.. +..+ ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~ 62 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT 62 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence 788999999999999998876653 2333 346789999999977 5667889999999998
Q ss_pred CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC
Q 001776 450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT 529 (1015)
Q Consensus 450 ~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~ 529 (1015)
++... .+..+.. +..++|+|+++. ++++++.|+.+++||+.+++.+..+.. ...+.+++|++ ++.++++++.
T Consensus 63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~ 134 (300)
T TIGR03866 63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP--DGKIVVNTSE 134 (300)
T ss_pred CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC--CCCEEEEEec
Confidence 87554 3443433 567899999983 345556789999999999888877763 33467788865 4478888877
Q ss_pred CC-eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCC------CCeE
Q 001776 530 DG-KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVG 602 (1015)
Q Consensus 530 dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~ 602 (1015)
++ .+.+||..+........ .......++|+|+++++++++. .++.+.+||+.+++.+..+..+.. ....
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 65 56778987655443332 2335577999999998876542 244699999999987776543211 1234
Q ss_pred EEEEeCCCCEEEEE-eCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEccCCceeeee
Q 001776 603 VVQFDTTKNRFLAA-GDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRT 680 (1015)
Q Consensus 603 ~v~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~ 680 (1015)
.++|+|++++++++ +.++.+.+||..+++.+..+.. ...+.+++|+|+|++|+++ ..+|.|.+||+.++ +.+..
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~-~~~~~ 286 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL-KVIKS 286 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEE
Confidence 58899999986554 4667899999998887766542 2367899999999999876 46899999999988 55555
Q ss_pred ec
Q 001776 681 VE 682 (1015)
Q Consensus 681 ~~ 682 (1015)
+.
T Consensus 287 ~~ 288 (300)
T TIGR03866 287 IK 288 (300)
T ss_pred EE
Confidence 54
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=198.57 Aligned_cols=422 Identities=13% Similarity=0.166 Sum_probs=270.5
Q ss_pred CEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce
Q 001776 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1015)
Q Consensus 420 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~ 499 (1015)
.|..++|-|||..|+.+..+ .+.+||...|..+. ++++|.+.|.|++|+.||+ .+++|+.|..|.+|+.+- +-
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~kl-EG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKL-EG 86 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccc-cc
Confidence 89999999999999887555 59999999998777 8999999999999999999 799999999999998543 33
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
+..+ .|...|.|+.|+|-. +.+++++. ...-+|..+.... ... .....+.+++|..||.+++.|-.+| +|
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqylalG~~nG----TI 156 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQYLALGMFNG----TI 156 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcch-hhccccChhhhhH-Hhh-hhheeEEEeeecCCCcEEEEeccCc----eE
Confidence 3334 399999999998876 67888775 3456786553222 111 2234788999999999999987644 57
Q ss_pred EEEeCCCCeeeEEe--eCCCCCCeEEEEEeCCC-----CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 580 VEWNESEGAVKRTY--HGLGKRSVGVVQFDTTK-----NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~--~~~~~~~i~~v~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
.+-+. +++....+ .+....+|.+++|+|.. ..+++.....++.++.+. |+.+..-..- .-...|+.+.+
T Consensus 157 siRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L--~FdP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRAL--NFDPCCISYFT 232 (1081)
T ss_pred EeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccC--CCCchhheecc
Confidence 66653 34433333 33445589999999974 466677777777777764 4444322211 12335899999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCC
Q 001776 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSND 732 (1015)
Q Consensus 653 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1015)
+|.++..|+.|+.+.+|-- .| -.+.++
T Consensus 233 NGEy~LiGGsdk~L~~fTR-~G-vrLGTv--------------------------------------------------- 259 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTR-DG-VRLGTV--------------------------------------------------- 259 (1081)
T ss_pred CCcEEEEccCCCceEEEee-cC-eEEeec---------------------------------------------------
Confidence 9999999999999999843 22 001000
Q ss_pred CCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCC-
Q 001776 733 SRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERN- 811 (1015)
Q Consensus 733 ~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~- 811 (1015)
- .....|..++..|+++.++.|+.||++..|++......
T Consensus 260 -------------------g---------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ 299 (1081)
T KOG1538|consen 260 -------------------G---------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHG 299 (1081)
T ss_pred -------------------c---------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhh
Confidence 0 03456788899999999999999999999987644000
Q ss_pred ------C--------------CC---c------------------eecccCceecCCCCCccccccCCCCCCCCCccEEE
Q 001776 812 ------S--------------TG---K------------------ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1015)
Q Consensus 812 ------~--------------~~---~------------------~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~ 850 (1015)
. .+ + ..-...+.+|...++.......+- ...-+..+.
T Consensus 300 ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY~v--~ekI~kkf~ 377 (1081)
T KOG1538|consen 300 LYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHYRV--KEKIIKKFE 377 (1081)
T ss_pred hhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchhHH--HHHHHhhcc
Confidence 0 00 0 000112333333333211100000 000001111
Q ss_pred Ec---cCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEE--cCCCCcEEEEEEcCCeEEEEEcccceEEEEEcC
Q 001776 851 LS---KNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAF--HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG 925 (1015)
Q Consensus 851 ~s---~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~--sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~ 925 (1015)
+| --++.++.+.+..+..+|+..-. .+... -.+-|.-+.. -|-+..-|+.|..||.|.-.=+++.-++....
T Consensus 378 cSLlVVc~~HiVlCqekrLqClDF~Gvk-~ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~~- 454 (1081)
T KOG1538|consen 378 CSLLVVCANHIVLCQEKRLQCLDFSGVK-EREWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLLK- 454 (1081)
T ss_pred ceEEEEEcCeEEEEcccceeeecccchh-hhhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhheec-
Confidence 11 12334444445666666653211 11100 0011111111 12255678889999877655455444333333
Q ss_pred ccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 926 HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 926 h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
....|.|+.++...+.||+..+.++..++|+.+++
T Consensus 455 ~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~e 489 (1081)
T KOG1538|consen 455 QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKE 489 (1081)
T ss_pred ccceeEEeeccCCcceEEEEccCCeEEEEEccCCc
Confidence 45669999999999999999999999999999987
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=201.56 Aligned_cols=248 Identities=11% Similarity=0.160 Sum_probs=197.3
Q ss_pred ccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
....++.||++.|++++..|.|.+||+|+.||+|+||.+.+|.+++... ..+.|.|++|+|.+...+|+.+-.+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCc-
Confidence 3445688999999999999999999999999999999999999988442 44579999999998764444443333
Q ss_pred EEEEEcCCC-------------------------------------ceEEEeeCCCCCEEEEeecccCCccEEEEEeCC-
Q 001776 489 IKVWDAVTG-------------------------------------TKQYIFEGHESPVYSICPHHKENIQFIFSTATD- 530 (1015)
Q Consensus 489 v~vwd~~~~-------------------------------------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d- 530 (1015)
+.|-+..-| .-++..-.|...|..+.|+..+ .+|++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG--DYlatV~~~~ 543 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG--DYLATVMPDS 543 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC--ceEEEeccCC
Confidence 433332111 0112233477889999987554 789887654
Q ss_pred --CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 531 --GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 531 --g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
..|.|.++........+....+.+.++.|+|...++++++. ..|++||+.....++.+..... .|..++.+|
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelvKkL~tg~k-wiS~msihp 617 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELVKKLLTGSK-WISSMSIHP 617 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-----cceEEEehhHHHHHHHHhcCCe-eeeeeeecC
Confidence 46889999877777667677778999999999999998874 3599999999888877766555 789999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 609 TKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 609 ~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
.|..++.++.|+.+..+|+.-. ++.+.+..| ...+++|+|++.-.++++|+.||++.|+.-
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 9999999999999999999754 566777766 668999999999999999999999999853
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=208.22 Aligned_cols=247 Identities=14% Similarity=0.198 Sum_probs=212.2
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC-ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
..|+..-+.++|.|+|.+|.+++.||.|++|+.... +... .+.-+...|.+++.. +. .|++|+.+++|.+|.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYK 82 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEee
Confidence 579999999999999999999999999999998765 3222 333377778777764 44 699999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
..+++.-..+...+-++++++|+ .+|.+++.|+.|-.|++-++.+......+.+|..+|.++.|+|++.+|++.+.||
T Consensus 83 fps~~~~~iL~Rftlp~r~~~v~--g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 83 FPSGEEDTILARFTLPIRDLAVS--GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred CCCCCccceeeeeeccceEEEEe--cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 99887766666677889999985 5558999999999999999999999999999999999999999999999987655
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCC-------CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLG-------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~-------~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 646 (1015)
.+++||+.++.+..++.+-. ...+..++|+|++..++..+.|+.|.+|+..+.+....+....+...+.
T Consensus 161 ----~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 161 ----KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ----eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 69999999998777665431 2356678999999999999999999999999999999888766666689
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 647 CIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 647 ~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
++.|+|+|++||+++.||.|.|||.++.
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccc
Confidence 9999999999999999999999999863
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=219.91 Aligned_cols=236 Identities=17% Similarity=0.314 Sum_probs=213.1
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|-++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45689999999997789999999999999999987655444 6899999999999999988 899999999999999
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
++.++.++++.+|...+.++.|+|.. .+.++|+.|+.+++||.+..++...+..|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999998766 78899999999999999999999999998888999999999999999875
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
+..+++||...|+....|..|.. .+..+.|+|..-.++.||.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 45799999999999999999987 8889999999989999999999999999988888777654 668999999999
Q ss_pred CCEEEEEeCC
Q 001776 654 GILLAVSTND 663 (1015)
Q Consensus 654 ~~~l~~~~~d 663 (1015)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999887654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=198.42 Aligned_cols=327 Identities=14% Similarity=0.257 Sum_probs=240.1
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC--EEEEEeCCCcE
Q 001776 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI--LLAVSTNDNGI 666 (1015)
Q Consensus 589 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i 666 (1015)
+-..+.+|.+ .+.+++..|.|.+|++|+.||+|+||.+.+|.++..+... ..|.||+|+|.+. .||++. ++++
T Consensus 392 ~~lvyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d---~~I~~vaw~P~~~~~vLAvA~-~~~~ 466 (733)
T KOG0650|consen 392 CALVYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD---SEIRSVAWNPLSDLCVLAVAV-GECV 466 (733)
T ss_pred eeeeEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec---ceeEEEEecCCCCceeEEEEe-cCce
Confidence 3456778887 8999999999999999999999999999999999999875 4789999999663 444444 4446
Q ss_pred EEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccc
Q 001776 667 KILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADE 746 (1015)
Q Consensus 667 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1015)
.|.+..-|.++.. +.... +++.. | .-..
T Consensus 467 ~ivnp~~G~~~e~---~~t~e----------------ll~~~-------------~--------------------~~~~ 494 (733)
T KOG0650|consen 467 LIVNPIFGDRLEV---GPTKE----------------LLASA-------------P--------------------NESE 494 (733)
T ss_pred EEeCccccchhhh---cchhh----------------hhhcC-------------C--------------------CccC
Confidence 6666544421111 00000 00000 0 0011
Q ss_pred cccceeeeeeccccC--CcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccC---cEEEEeeccccCCCCCCceecccC
Q 001776 747 AVEKSRIWKLTEITE--PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQA 821 (1015)
Q Consensus 747 ~d~~v~iw~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~ 821 (1015)
.+..+..|.-....+ .+.+..+. |...|..+.|+..|.+|++...+ ..|.|.++...
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~------------- 556 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR------------- 556 (733)
T ss_pred CcccceeechhhhhhhccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccc-------------
Confidence 123455565442221 22333443 78899999999999999998764 45666655432
Q ss_pred ceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEE
Q 001776 822 PQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIA 901 (1015)
Q Consensus 822 ~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la 901 (1015)
... ..+.. ..+.|.++.|+|...++.+++...|+|||+..+++++.+......|..++.+| .|.-|+
T Consensus 557 ---------~sQ-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli 623 (733)
T KOG0650|consen 557 ---------KSQ-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLI 623 (733)
T ss_pred ---------ccc-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEE
Confidence 111 12222 56789999999999999999999999999999999988888888999999999 899999
Q ss_pred EEEcCCeEEEEEcccc-eEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc--Cc--ccccceEEEecCCCccc
Q 001776 902 IGMEDSSIQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD--GW--EKQASKFLTIPNGRTAS 976 (1015)
Q Consensus 902 ~g~~dg~v~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~--~~--~~~~~~~~~~~~~~~~~ 976 (1015)
.|+.|+.++.+|+.-+ ++.++++.|...+++|+|++.-.++++|+.||++.|+.-. +. +..-..++..+.||...
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 9999999999999854 6778899999999999999999999999999999988521 11 01112356677777532
Q ss_pred -cCCceEEEEccCCCEEEE-EeCCeEEEE
Q 001776 977 -ALADTRVQFHLDQTHLLA-VHETQIAIY 1003 (1015)
Q Consensus 977 -~~~v~~l~fs~dg~~l~~-~~d~~i~vw 1003 (1015)
...|..+.|.|..-+|++ |.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 245888999999999999 599999998
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=192.99 Aligned_cols=273 Identities=12% Similarity=0.148 Sum_probs=202.2
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 437 (1015)
.|..++|-|||..+++.+ +..+.+||...|..+.+ +++|++.|+|++|+.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence 788999999998766654 45699999999998875 899999999999999999999999
Q ss_pred CCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecc
Q 001776 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1015)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 517 (1015)
.|..|.+|+-+-...++ -.|.+.|.|+.|+|-.. .+++|+-. ..-+|..+..... ..+ ....+.+++|
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~-K~k-ss~R~~~CsW-- 140 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS-KHK-SSSRIICCSW-- 140 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH-hhh-hheeEEEeee--
Confidence 99999999876543332 25999999999999998 68888764 4678986544322 211 2345666666
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceeeecC---CCCceEEEEECCCCC-----EEEEEeeCCCCCceEEEEeCCCCee
Q 001776 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGHSSTMMAYSADGA-----RLFSCGTNKEGESYLVEWNESEGAV 589 (1015)
Q Consensus 518 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~s~~~~-----~l~~~~~d~~~~~~i~iwd~~~~~~ 589 (1015)
..||++++.|-.+|+|.+-+-. ++....+.. ...+|.+++|+|... .+++... ..++..+.+. |+.
T Consensus 141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQ 214 (1081)
T ss_pred cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-cee
Confidence 5677999999999999987644 333333333 455899999999643 3333322 2234444443 333
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001776 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 669 (1015)
+..-....- ...++.+.++|.+++.||.|+.+.+|.. .|-.+.++... ...|+.++..|+++.++.|+.||+|-.|
T Consensus 215 Igk~r~L~F-dP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 215 IGKDRALNF-DPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred ecccccCCC-CchhheeccCCcEEEEccCCCceEEEee-cCeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehh
Confidence 332222222 3457889999999999999999999974 45555555433 4589999999999999999999999999
Q ss_pred EccC
Q 001776 670 ANAD 673 (1015)
Q Consensus 670 ~~~~ 673 (1015)
++..
T Consensus 291 Nl~f 294 (1081)
T KOG1538|consen 291 NLIF 294 (1081)
T ss_pred hhHH
Confidence 8754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=209.40 Aligned_cols=301 Identities=12% Similarity=0.183 Sum_probs=229.2
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DG 430 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg 430 (1015)
.++-.....++...++-..++++|- ..+.||.+........ +.+.. .. -..-...+..|.|+. +.
T Consensus 35 ~~~~k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~--~~~~~--------k~--kqn~~~S~~DVkW~~~~~ 100 (839)
T KOG0269|consen 35 NCKLKAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEK--CNHRF--------KT--KQNKFYSAADVKWGQLYS 100 (839)
T ss_pred eeecccccceEeecCCcceeEEecc--cceeeEeeCcccCCcc--eeeec--------cc--ccceeeehhhcccccchh
Confidence 3345566778888888776666553 3466666654332111 11000 00 001113455678876 78
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCE
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v 510 (1015)
++||+++..|.|.+||+.....-+....|..|...++++.|++...+ +|++||.||+|++||++..+...++.+....|
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhh
Confidence 89999999999999999873222233367899999999999998887 89999999999999999999999999999999
Q ss_pred EEEeecccCCccEEEEEeCCCeEEEEeCCCCC-ceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~ 589 (1015)
..+.|+|.. +..++++.+.|.+++||++... ....+..|.++|.++.|+|++.+|++||.|+ +|+|||..+++.
T Consensus 180 RDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK----~vkiWd~t~~~~ 254 (839)
T KOG0269|consen 180 RDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK----MVKIWDMTDSRA 254 (839)
T ss_pred hceeeccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc----cEEEEeccCCCc
Confidence 999999876 4799999999999999999754 4567889999999999999999999998655 699999988776
Q ss_pred eEEeeCCCCCCeEEEEEeCCCC-EEEEEe--CCCcEEEEeCCCCc-eeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCC
Q 001776 590 KRTYHGLGKRSVGVVQFDTTKN-RFLAAG--DEFMIKFWDMDNVN-LLASIDADGGLQASPCIRFNK-EGILLAVSTNDN 664 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~~~~-~l~~~~--~dg~i~vwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg 664 (1015)
......+...++..+.|-|... +|++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.||
T Consensus 255 ~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 255 KPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred cceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCcc
Confidence 6555556666899999999875 455555 78899999997643 44455544 67889999976 567888999999
Q ss_pred cEEEEEccCC
Q 001776 665 GIKILANADG 674 (1015)
Q Consensus 665 ~i~iw~~~~~ 674 (1015)
++..-...++
T Consensus 333 tv~qh~~kna 342 (839)
T KOG0269|consen 333 TVLQHLFKNA 342 (839)
T ss_pred HHHHhhhhcc
Confidence 8876666554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=176.50 Aligned_cols=214 Identities=13% Similarity=0.168 Sum_probs=170.8
Q ss_pred ccCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccCCcee------e------eeeEEecccCceeEEEEecCCCceEEE
Q 001776 415 SDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL------R------NHLEIEAHVGSVNDLAFSYPNKQLSVV 481 (1015)
Q Consensus 415 ~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~------~------~~~~~~~h~~~V~~~~~s~~~~~~~l~ 481 (1015)
..|.+.|+++...+ .|+++++|+.||.|.+||++..... . ....-.+|.-.|..+.|-|-... ++.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mFt 118 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MFT 118 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-eee
Confidence 45889999999998 7999999999999999999864311 0 01112468889999999996665 789
Q ss_pred EEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCC-ccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEEC
Q 001776 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN-IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYS 560 (1015)
Q Consensus 482 s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s 560 (1015)
+++.|.+++|||..+-+....|+ ..+.|.+-+++|-.- ..++++|..|-.|++.|+..+.....+.+|...|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988877776 456677666665443 2467888888999999999999999999999999999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCC-------------CCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001776 561 ADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLG-------------KRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1015)
Q Consensus 561 ~~~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~-------------~~~i~~v~~~~~~~~l~~~~~dg~i~vwd 626 (1015)
|...++++.+ ..++.+++||++.. .+...+..|. .+.+..++|+.++.++++++.|..+++|+
T Consensus 198 p~~e~vLatg---saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 198 PSSEWVLATG---SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred cCceeEEEec---CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9998876654 23557999999865 3333333222 23688899999999999999999999999
Q ss_pred CCCCcee
Q 001776 627 MDNVNLL 633 (1015)
Q Consensus 627 ~~~~~~~ 633 (1015)
..+|+..
T Consensus 275 ~~~G~nt 281 (397)
T KOG4283|consen 275 MESGRNT 281 (397)
T ss_pred cccCccc
Confidence 9988643
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=199.61 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=211.5
Q ss_pred EEec--cCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECC
Q 001776 362 MDFH--PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK 439 (1015)
Q Consensus 362 ~~~s--p~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d 439 (1015)
+.|+ |+.+++||.+..||.|.++|.....-... ..+......|...|..+.|-|....|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 4444 45567999999999999999866432210 01111256799999999999977789999999
Q ss_pred CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc---------------------
Q 001776 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT--------------------- 498 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~--------------------- 498 (1015)
.++++||+++++..... .+.+|.+.|.+++|.|++.. .|++|+.||.|.|||++-..
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998876643 47899999999999999987 79999999999999986322
Q ss_pred ------eEEEeeCCCCCEEE---EeecccCCccEEEEEeC-CCeEEEEeCCCCCceee--------ecCC---CCceEEE
Q 001776 499 ------KQYIFEGHESPVYS---ICPHHKENIQFIFSTAT-DGKIKAWLYDNLGSRVD--------YDAP---GHSSTMM 557 (1015)
Q Consensus 499 ------~~~~~~~h~~~v~~---i~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~--------~~~~---~~~i~~~ 557 (1015)
.+.....+...|.+ +.+..++ ..|++++. |+.|+|||++....... +..+ ...+.++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 01112233334443 3332233 68888887 99999999987554332 1222 2267788
Q ss_pred EECCCCCEEEEEeeCCCCCceEEEEeCCCC--eeeEEeeCCCCCCeE-EEEEeCCCCEEEEEeCCCcEEEEeCCCCcee-
Q 001776 558 AYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL- 633 (1015)
Q Consensus 558 ~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~-~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~- 633 (1015)
.....|.++++.+.|+ .|+.|++.+- .++..+.++....++ .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 278 ~lDssGt~L~AsCtD~----sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDN----SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EecCCCCeEEEEecCC----cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 8888889988877654 5999999864 344555555432222 2357899999999999999999999876543
Q ss_pred EEEecCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEccCC
Q 001776 634 ASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
..+. +|...|++++|.|. -.-++++++|..++||++..+
T Consensus 354 ~~l~--Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALLL--GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhh--CcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3344 44778999999983 345777799999999999766
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=188.84 Aligned_cols=243 Identities=12% Similarity=0.168 Sum_probs=190.0
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeE------------------EecccCceeEEEEecCCCceEEEEEeCCCeEE
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLE------------------IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~------------------~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~ 490 (1015)
-|+++|.|+.|..|.|||+.-...+.+... -.+|...|.+++|+..-++ .|++||.|.+|+
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence 478999999999999999864322222111 2369999999999988777 899999999999
Q ss_pred EEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEe
Q 001776 491 VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 491 vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
+||+.+|++..++..|...|.++.|++... .+|++|+.|+++.+.|.+............+.|..++|.|.....+.++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999998665 7999999999999999995443333333355889999999887766666
Q ss_pred eCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001776 571 TNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1015)
Q Consensus 571 ~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v 648 (1015)
.+ +++++-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|++|++...............+...|.
T Consensus 349 td---dG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 349 TD---DGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred cC---CceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 43 557999999975 89999999998 99999998765 56788889999999998755443222211112345677
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEEccCCcee
Q 001776 649 RFNKEG-ILLAVSTNDNGIKILANADGIRL 677 (1015)
Q Consensus 649 ~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~ 677 (1015)
++.|+- .+++.|+..+.++|||+.+....
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 778854 56778888889999999887433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-20 Score=175.00 Aligned_cols=255 Identities=11% Similarity=0.165 Sum_probs=192.2
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC-ceeeeeeEEecccCceeEEEEecC--CCceEEEEEeCCCeEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYP--NKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~~--~~~~~l~s~s~dg~v~ 490 (1015)
-.+|.+-|.++.|.+-|+++|+|+.|++|+|||.+.+ .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4689999999999999999999999999999996433 234444567899999999999764 55 899999999999
Q ss_pred EEEcCC---------CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCcee------eec-------
Q 001776 491 VWDAVT---------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV------DYD------- 548 (1015)
Q Consensus 491 vwd~~~---------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~------- 548 (1015)
||.-.. .....++......|++++|.|..-|-.+++++.||.+|||+.-...... .+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 998421 1223466677889999999999988999999999999999865432221 111
Q ss_pred CCCCceEEEEECCC---CCEEEEEeeC-CCCCceEEEEeCCCC----eeeEEeeCCCCCCeEEEEEeCCC----CEEEEE
Q 001776 549 APGHSSTMMAYSAD---GARLFSCGTN-KEGESYLVEWNESEG----AVKRTYHGLGKRSVGVVQFDTTK----NRFLAA 616 (1015)
Q Consensus 549 ~~~~~i~~~~~s~~---~~~l~~~~~d-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~i~~v~~~~~~----~~l~~~ 616 (1015)
.+..+..|+.|+|. ..+|++++.+ ....+.++||....+ ..+.++.++.+ +|+.++|.|+- ..|+++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEEe
Confidence 12336788999874 3467776643 112234677765443 24456677777 99999999974 578899
Q ss_pred eCCCcEEEEeCCCCc-----------------eeEEEe-cCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 617 GDEFMIKFWDMDNVN-----------------LLASID-ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 617 ~~dg~i~vwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
+.|| |+||++.... .+..+. ..+|...|..+.|+-.|..|++.++||++|+|...
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999 9999986311 122222 34567899999999999999999999999999764
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=209.07 Aligned_cols=246 Identities=11% Similarity=0.215 Sum_probs=196.7
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCC---cceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGS---RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 433 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 433 (1015)
.+..|.|+.-...++||++..|.|.+||+.. .+++. .+..|+..|+++.|++ ...+|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~-------------------~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLT-------------------VFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhh-------------------HhhhhccceeeeeeccCCccEE
Confidence 4567888876666999999999999999976 22222 3789999999999998 56789
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-ceEEEeeCCCCCEEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYS 512 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~h~~~v~~ 512 (1015)
++|+.||.|++||++..+... ++.+....|..|.|+|...+ .++++...|.+.+||++.. ++...+..|.++|.+
T Consensus 150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 999999999999999876554 67778889999999997765 8999999999999999865 567788999999999
Q ss_pred EeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC-CCCceEEEEECCCCCE-EEEEeeCCCCCceEEEEeCCCCe-e
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-PGHSSTMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGA-V 589 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~s~~~~~-l~~~~~d~~~~~~i~iwd~~~~~-~ 589 (1015)
+.|+| ++.+|++|+.|+.|+|||+.+......... ...++..+.|-|...+ |++++.-. +..|++||++..- +
T Consensus 226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~--dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVV--DTSVHVWDVRRPYIP 301 (839)
T ss_pred EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccc--cceEEEEeecccccc
Confidence 99987 458999999999999999986655443333 3458999999998765 55555432 5569999998775 4
Q ss_pred eEEeeCCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCc
Q 001776 590 KRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
..++..|.+ .++.++|.. |...+.+++.||.|..-.++++.
T Consensus 302 ~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 302 YATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 556777776 888899865 44678888899988766555543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=216.98 Aligned_cols=253 Identities=13% Similarity=0.216 Sum_probs=207.8
Q ss_pred CCCCEEEEEEccCCCE----EEEEECCCeEEEEEccC---CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeE
Q 001776 417 YTASVNRVMWSPDGTL----FGVAYSKHIVHLYTYHG---GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~----las~~~dg~v~iwd~~~---~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
-....+.++|.+.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ ++++|+.||.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI 141 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEI 141 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcE
Confidence 4467889999997776 89999999999999875 4434444467789999999999999887 79999999999
Q ss_pred EEEEcCCCceEEEee--CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC--ceEEEEECCCCCE
Q 001776 490 KVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--SSTMMAYSADGAR 565 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~s~~~~~ 565 (1015)
.|||+..-+.-..+. .....|.+++|+..- .+.|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 999998765554442 245779999997643 47899999999999999998877777666554 5788999998765
Q ss_pred EEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001776 566 LFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 643 (1015)
-+..+.+.++...|.+||++.. ..++.+.+|.. .|.++.|++.+ .++++++.|+.|.+|+.++++.+..+... ..
T Consensus 221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~n 297 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ--GN 297 (1049)
T ss_pred eeeeecCCCCCceeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC--Cc
Confidence 4444445567889999999864 56778888877 89999999977 88889999999999999999999998764 56
Q ss_pred CcceEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q 001776 644 ASPCIRFNKEG-ILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 644 ~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.+..+.|+|.. ..+++++-||.|.|+.+.+.
T Consensus 298 W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 298 WCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred ceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 88999999965 58889999999999999766
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=180.35 Aligned_cols=303 Identities=19% Similarity=0.196 Sum_probs=216.6
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
...+|..+.|.++....+|||+.|..|+||.+..+..-... . ...-...+..|...|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~---------~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M---------KVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e---------eEEEeecccCCcceeEEEEEcCCcCeee
Confidence 55789999999988768899999999999998765432100 0 0011224789999999999999999999
Q ss_pred EEECCCeEEEEEcc--------C-----CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE
Q 001776 435 VAYSKHIVHLYTYH--------G-----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 435 s~~~dg~v~iwd~~--------~-----~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 501 (1015)
+|+.+|.|.+|... + .+.......+.+|...|..++|+|++. ++++++.|+++++||+..|....
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 2 111223446788999999999999999 89999999999999999999999
Q ss_pred EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec-------------------CCCC----ceEEEE
Q 001776 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-------------------APGH----SSTMMA 558 (1015)
Q Consensus 502 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-------------------~~~~----~i~~~~ 558 (1015)
.+..|...|..++|.|.. +++++-+.|...+.+.+.......... .|.. -...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999997765 789988888876666554332221110 0111 245678
Q ss_pred ECCCCCEEEEEeeC----CCC-CceEEEEeCCC-CeeeEEeeCCCCCCeEEEEEeC------------------CCCEEE
Q 001776 559 YSADGARLFSCGTN----KEG-ESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDT------------------TKNRFL 614 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d----~~~-~~~i~iwd~~~-~~~~~~~~~~~~~~i~~v~~~~------------------~~~~l~ 614 (1015)
|+|+|..+++.+.- +.- .+..++++-.. .++...+.+... ....+.++| -+-.++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999875421 110 22334454321 122233333322 333333332 233444
Q ss_pred EEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 615 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.++ ...|++||.++-.++..... -|-..++.++|++||..++..+.||...+.-++..
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred Eee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 555 45799999999888877653 23568999999999999999999998888776654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-20 Score=191.99 Aligned_cols=290 Identities=17% Similarity=0.172 Sum_probs=210.2
Q ss_pred EEEEcc---CCCEEEEEECCCeEEEEEccCCcee---eeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC
Q 001776 423 RVMWSP---DGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 423 ~l~~sp---dg~~las~~~dg~v~iwd~~~~~~~---~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~ 496 (1015)
+..|++ ....||.+..||.|.++|.....-- +.+.....|...|..+.|-| |+. .|++++.|.++++||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 356665 3457899999999999998753211 12235668999999999999 544 799999999999999999
Q ss_pred CceEEE--eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce---------------------------eee
Q 001776 497 GTKQYI--FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR---------------------------VDY 547 (1015)
Q Consensus 497 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~---------------------------~~~ 547 (1015)
++++.. +.||.+.|.++||.+... ..+++|+.||.|.|||++..... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 998876 899999999999998765 68999999999999998643310 001
Q ss_pred cCCCCceEE---EEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeE--------EeeCCC--CCCeEEEEEeCCCCEEE
Q 001776 548 DAPGHSSTM---MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR--------TYHGLG--KRSVGVVQFDTTKNRFL 614 (1015)
Q Consensus 548 ~~~~~~i~~---~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~--------~~~~~~--~~~i~~v~~~~~~~~l~ 614 (1015)
..+...|.+ +.+..|...|++++. .|+.|++||++...... .+..+. ...+.++.....|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 112224444 667788899999875 46679999998754322 222221 12456677777789999
Q ss_pred EEeCCCcEEEEeCCCCc--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccc
Q 001776 615 AAGDEFMIKFWDMDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (1015)
Q Consensus 615 ~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 692 (1015)
+.+.|+.|++|++.+.. ++..+.++.....-..-..+|++.++++|+.|...++|.+.+.+.....+.+|...+..+.
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 98899999999997643 3333333322222223456899999999999999999999998777788888877765442
Q ss_pred ccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccc
Q 001776 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1015)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~ 759 (1015)
...- +-..+++++.|.++++|++...
T Consensus 368 w~pS-----------------------------------------~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 368 WLPS-----------------------------------------ATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccc-----------------------------------------cCCCceeeccCcceEEEeccCc
Confidence 2111 1234677899999999998643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-21 Score=205.80 Aligned_cols=233 Identities=13% Similarity=0.222 Sum_probs=207.4
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
|...|.|+..-..++ .+++|+.|-.+-+|.+..-..+.. +.+|..+|.++.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcchhhhc
Confidence 778888888855566 889999999999999865444332 789999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+|+.+|+|++||++.++.++ ++.+|...+..+.|+|-+. +.++|+.|+.+++||.+...|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999988777 8999999999999999999 789999999999999999999999999999999999
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEee
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~ 594 (1015)
|.|+ |++++++++|.++++||...++....+..|...+..+.|+|..-.+..|+.|+ ++++||+++.+.+....
T Consensus 162 lsP~--Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~----tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPD--GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR----TVRFWDLETFEVISSGK 235 (825)
T ss_pred ecCC--CceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc----eeeeeccceeEEeeccC
Confidence 9654 48999999999999999999999999999999999999999988888887654 69999999988888777
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCC
Q 001776 595 GLGKRSVGVVQFDTTKNRFLAAGDE 619 (1015)
Q Consensus 595 ~~~~~~i~~v~~~~~~~~l~~~~~d 619 (1015)
.... .|.+..|+|++..+++|..+
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 89999999999988887654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-17 Score=186.04 Aligned_cols=374 Identities=22% Similarity=0.379 Sum_probs=285.2
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-eEEEeeCCCC-CEEEEeecccCCcc-EEEEEeC-CCeE
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEGHES-PVYSICPHHKENIQ-FIFSTAT-DGKI 533 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~h~~-~v~~i~~~~~~~~~-~l~s~~~-dg~i 533 (1015)
.+..|...+.++.+.+.+. .++.++.|+.+.+|+...+. ....+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence 3567999999999999999 78888899999999998887 6777776443 67777774 44445 4555444 9999
Q ss_pred EEEeCCC-CCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC-
Q 001776 534 KAWLYDN-LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN- 611 (1015)
Q Consensus 534 ~vwd~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~- 611 (1015)
.+|+... ......+..+...+..++|+|+++.+++++. .++.+.+|+...+..+..+.+|.. .+.+++++|++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 212 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHTD-PVSSLAFSPDGGL 212 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCCC-ceEEEEEcCCcce
Confidence 9999997 6677778888889999999999997777753 245699999999888888888776 899999999998
Q ss_pred EEEEEeCCCcEEEEeCCCCceeE-EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccc
Q 001776 612 RFLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASR 690 (1015)
Q Consensus 612 ~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 690 (1015)
.+++++.|+.|++||...+..+. .+..+ ...+ ...|++++..+++++.|+.+++|+...........
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------- 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------- 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---------
Confidence 55555899999999988777777 46555 3332 22899999899999999999999987652201000
Q ss_pred ccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEecc
Q 001776 691 VASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRL 770 (1015)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~ 770 (1015)
T Consensus 281 -------------------------------------------------------------------------------- 280 (466)
T COG2319 281 -------------------------------------------------------------------------------- 280 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEE
Q 001776 771 PDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1015)
Q Consensus 771 ~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~ 850 (1015)
..|...+.++.|+|++..+++++.|+.+.+|+...... ..... ...|...+..+.
T Consensus 281 --~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~-~~~~~~~~~~~~ 335 (466)
T COG2319 281 --SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL----------------------LSSLT-LKGHEGPVSSLS 335 (466)
T ss_pred --ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce----------------------EEEee-ecccCCceEEEE
Confidence 02567788899999888888888888899996543210 00000 012566788888
Q ss_pred EccCCCEEEEE-c-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEE-EEcCCeEEEEEcccceEEEEEcCcc
Q 001776 851 LSKNDSYVMSA-S-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI-GMEDSSIQIYNVRVDEVKTKLKGHQ 927 (1015)
Q Consensus 851 ~s~dg~~la~~-s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~-g~~dg~v~vwd~~~~~~~~~l~~h~ 927 (1015)
+++++..++.+ . |+.+.+|++............ ..+..+.+++ + ..++. +..++.+.+|+............+.
T Consensus 336 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (466)
T COG2319 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412 (466)
T ss_pred ECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCC
Confidence 84343566655 4 888999999887733333322 2288999998 7 55555 7899999999999988877776554
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001776 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 928 ~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~ 958 (1015)
..+....+++++..+++++.++.+++|+...
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 7799999999999999999999999999988
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=169.92 Aligned_cols=408 Identities=11% Similarity=0.141 Sum_probs=259.7
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEE
Q 001776 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1015)
Q Consensus 423 ~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~ 502 (1015)
-++|||+|+++|+++.- .+.|-|..+-+....+ .--..|..+.|..|..+ .|.....|+.|.+|++...+--..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999776 5777777765433211 12456888999988875 456677899999999999988888
Q ss_pred eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 503 ~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
+.....++.+++|+|++. ..+.+...|-.|.+|.+.+..... +......+..++|+|||++.+.++.- |-...+.+.
T Consensus 87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHHH
Confidence 888889999999987664 567778889999999998765543 33344567899999999998887642 222234443
Q ss_pred eCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001776 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
........+.+..... ..+.+.|+|||+.+++-. -+-.|+.|.. .-.+..++|+|.+++|+.|
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laVwd~~Leykv~aYe~--------------~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAVWDNVLEYKVYAYER--------------GLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEEecchhhheeeeeee--------------ccceeEEEeccccceEEee
Confidence 3334455556655544 567799999998877543 2222332221 1246789999999999999
Q ss_pred eCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccc
Q 001776 661 TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVK 740 (1015)
Q Consensus 661 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (1015)
+.|+.+||.+--+- +.+..+- |-....
T Consensus 229 syD~~lrvlnh~tW-k~f~efl-hl~s~~--------------------------------------------------- 255 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTW-KPFGEFL-HLCSYH--------------------------------------------------- 255 (447)
T ss_pred ccchhhhhhceeee-eehhhhc-cchhcc---------------------------------------------------
Confidence 99999999775443 2221111 100000
Q ss_pred cccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceeccc
Q 001776 741 PKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQ 820 (1015)
Q Consensus 741 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 820 (1015)
|.+..+..-+ ... . ..-...++.|.|..- ...+|......+....-.+
T Consensus 256 -------dp~~~~~~ke------~~~---~----~ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~pv--- 303 (447)
T KOG4497|consen 256 -------DPTLHLLEKE------TFS---I----VQLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTPV--- 303 (447)
T ss_pred -------Cchhhhhhhh------hcc---h----hhhcccccccCCCcc---------ccCccccchhhhhhhhcce---
Confidence 0000000000 000 0 001112333433321 1111111100000000000
Q ss_pred CceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcC---CeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCC
Q 001776 821 APQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG---GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 897 (1015)
Q Consensus 821 ~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sd---g~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~ 897 (1015)
.+....+.+ ..+ +....+.-++||+|..++|+-.| ..+.+||++..+....+. ...+|....|+| +.
T Consensus 304 ~~~~lkp~t------D~p--nPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~ 373 (447)
T KOG4497|consen 304 KVHKLKPPT------DFP--NPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GR 373 (447)
T ss_pred eeecccCCC------CCC--CcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CC
Confidence 000000001 111 24567888999999999999986 569999998877666555 567899999999 77
Q ss_pred cEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCc
Q 001776 898 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQ 950 (1015)
Q Consensus 898 ~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~ 950 (1015)
..|+.......+++|......++.. .+..-.|..+.|.-+|..++..+.|.-
T Consensus 374 prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 374 PRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred ceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 7777777777899999776555543 233467999999999999999999873
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=166.59 Aligned_cols=251 Identities=13% Similarity=0.226 Sum_probs=189.0
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcce--EeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CC
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRER--IAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DG 430 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 430 (1015)
|.+-|.++.|.+-|++ +|+|+.|++|+|||..+..- ..+.+ ...|.+.|..+.|.+ -|
T Consensus 12 h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~Ts~-----------------Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSCTSS-----------------WRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred CcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEEeee-----------------EEecCCcEEEEEecCcccc
Confidence 7788999999999995 69999999999999754432 22111 356999999999976 69
Q ss_pred CEEEEEECCCeEEEEEccC------CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc------
Q 001776 431 TLFGVAYSKHIVHLYTYHG------GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT------ 498 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~------~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~------ 498 (1015)
+.+|+++.|+++.||.-.. +..-....++......|+++.|.|....+.+++++.||.++||+.-...
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 9999999999999997521 1222334467778889999999998777799999999999999865432
Q ss_pred eEEEee-------CCCCCEEEEeecccCCc-cEEEEEeCC-----CeEEEEeCCCCCc----eeeecCCCCceEEEEECC
Q 001776 499 KQYIFE-------GHESPVYSICPHHKENI-QFIFSTATD-----GKIKAWLYDNLGS----RVDYDAPGHSSTMMAYSA 561 (1015)
Q Consensus 499 ~~~~~~-------~h~~~v~~i~~~~~~~~-~~l~s~~~d-----g~i~vwd~~~~~~----~~~~~~~~~~i~~~~~s~ 561 (1015)
..++++ .+..+..|+.|+++.-. .+|+.|+.+ +.++||....... ...+..+..+|+.++|.|
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 222333 45667788888765322 466666665 4788998766552 334667888999999999
Q ss_pred CC----CEEEEEeeCCCCCceEEEEeCCCC--------------------eeeEEeeCCCCCCeEEEEEeCCCCEEEEEe
Q 001776 562 DG----ARLFSCGTNKEGESYLVEWNESEG--------------------AVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1015)
Q Consensus 562 ~~----~~l~~~~~d~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~ 617 (1015)
+- ..|++++.|| |+||.+... +.+..+..|.. .+..+.|+-.|..|.+.|
T Consensus 234 n~Gr~y~~lAvA~kDg-----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTG 307 (361)
T ss_pred ccCCceeeEEEeecCc-----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecC
Confidence 63 3567776554 999988731 12344566665 899999999999999999
Q ss_pred CCCcEEEEeCCC
Q 001776 618 DEFMIKFWDMDN 629 (1015)
Q Consensus 618 ~dg~i~vwd~~~ 629 (1015)
.||.|++|...-
T Consensus 308 dDG~VRLWkany 319 (361)
T KOG2445|consen 308 DDGCVRLWKANY 319 (361)
T ss_pred CCceeeehhhhh
Confidence 999999997653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=177.17 Aligned_cols=175 Identities=21% Similarity=0.374 Sum_probs=146.5
Q ss_pred CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEE
Q 001776 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1015)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1015)
....+.+++ |...=++++|||-..-.|++|.--+.|++|...+|.-... ..-+.+|+..|-.+
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDL 263 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDL 263 (440)
T ss_pred ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhh
Confidence 445677776 9999999999995443478888888999999988764321 11257799999999
Q ss_pred EEccC-CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC---CceE
Q 001776 425 MWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQ 500 (1015)
Q Consensus 425 ~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~---~~~~ 500 (1015)
+|||. ...||+|+.||+|+|||++.+...... ..+.|.+.|+.+.|+.+-. +|++|+.||+++|||+++ ++++
T Consensus 264 qWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 264 QWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred ccCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcc
Confidence 99994 568999999999999999998543333 2488999999999998888 899999999999999974 6788
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCC
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 540 (1015)
.+|+.|..+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 99999999999999999877 5889999999999999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-16 Score=179.16 Aligned_cols=291 Identities=26% Similarity=0.439 Sum_probs=220.5
Q ss_pred EEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcc-eEeEeeeEEEeccCCCccccccccccCC-CCEEEEEE-c
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE-RIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMW-S 427 (1015)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s 427 (1015)
....|...|.++.|.+.+. .++.++.|+.+.+|+...+. .... +.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence 3455899999999999999 67778899999999998886 3322 23322 47777777 8
Q ss_pred cCCC-EEEEEEC-CCeEEEEEccC-CceeeeeeEEecccCceeEEEEecCCCceEEEEEeC-CCeEEEEEcCCCceEEEe
Q 001776 428 PDGT-LFGVAYS-KHIVHLYTYHG-GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 428 pdg~-~las~~~-dg~v~iwd~~~-~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~~~ 503 (1015)
+++. .++..+. |+.+.+|+... ..... .+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 89999999987 44333 6788999999999999999 6888875 999999999999999999
Q ss_pred eCCCCCEEEEeecccCCcc-EEEEEeCCCeEEEEeCCCCCcee-eecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEE
Q 001776 504 EGHESPVYSICPHHKENIQ-FIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
.+|...|.+++|.+.. . .+++++.|+.|++||........ .+..+.... ...|+|++..+++++.+ ..+++
T Consensus 195 ~~~~~~v~~~~~~~~~--~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d----~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSPDG--GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD----GTIRL 267 (466)
T ss_pred ccCCCceEEEEEcCCc--ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC----CcEEE
Confidence 9999999999998443 4 55555999999999888555555 466665554 33899999888866554 46999
Q ss_pred EeCCCCee-eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEE
Q 001776 582 WNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 582 wd~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
|+...... ...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 44444554 48999999998889988888889999999888776666511223367888883332455555
Q ss_pred -eCCCcEEEEEccCC
Q 001776 661 -TNDNGIKILANADG 674 (1015)
Q Consensus 661 -~~dg~i~iw~~~~~ 674 (1015)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56777877776554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=173.71 Aligned_cols=269 Identities=15% Similarity=0.245 Sum_probs=188.9
Q ss_pred CCceeEEEeccCCCeeEEEeccCC-CeEEEEEecCCeEEEEEcCCcce-EeEeeeEEEeccCCCccccccccccCCCCEE
Q 001776 345 LPKTVVMTLNQGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVGSRER-IAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (1015)
Q Consensus 345 ~~~~~~~~~~h~~~V~~~~~sp~g-~~lla~g~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (1015)
.|........|.+.|..+.-++-+ ..++|+=+..|.|.||++...-. +....+.+-+ ........+.+|...=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 345556667788888888888875 33566667789999999854211 1110111101 11112224678999999
Q ss_pred EEEEccC-CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC---c
Q 001776 423 RVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG---T 498 (1015)
Q Consensus 423 ~l~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~---~ 498 (1015)
.++|||- .-.|++|..-+.|++|...+|.-..-...+.+|...|-.++|||..+. +|++||.||+|+|||++.+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999993 234788877888999999887643333457789999999999998887 8999999999999999988 3
Q ss_pred eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC---ceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG---SRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
++.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++..+ .+..+..|..+|+++.|+|....++.++. .
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~ 368 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---E 368 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---C
Confidence 4444 7899999999997655 499999999999999998643 45678889999999999996654444332 2
Q ss_pred CceEEEEeCCCCee----------------eEEeeCC-CCCCeEEEEEeCCC-CEEEEEeCCCcEEEE
Q 001776 576 ESYLVEWNESEGAV----------------KRTYHGL-GKRSVGVVQFDTTK-NRFLAAGDEFMIKFW 625 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~----------------~~~~~~~-~~~~i~~v~~~~~~-~~l~~~~~dg~i~vw 625 (1015)
+.+|.+||+..-.- .+.+-.| .+..+..+.|++.- .++++.+.|| +.||
T Consensus 369 D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 369 DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 45799999863211 0111112 12245567777754 4666777776 3444
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=180.67 Aligned_cols=261 Identities=12% Similarity=0.183 Sum_probs=204.6
Q ss_pred CEEEEEEccCCCE-EEEEECCCeEEEEEccCCce-eeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 420 SVNRVMWSPDGTL-FGVAYSKHIVHLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 420 ~V~~l~~spdg~~-las~~~dg~v~iwd~~~~~~-~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
.+.++.|+....+ +|+.+.|..+++|.-..... +.......+. .-.|++...... ++++|+..+.|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHH
Confidence 4899999987652 33345677889997543311 1111122222 233444443444 8999999999999999988
Q ss_pred ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC-CCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 498 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
.+.+.+++|+..|+++.++... .+|++++..|.|.+..+.+......+... +..+.-+.|+|..+.+++...| +
T Consensus 112 l~hr~lkdh~stvt~v~YN~~D--eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~ 186 (673)
T KOG4378|consen 112 LIHRFLKDHQSTVTYVDYNNTD--EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---K 186 (673)
T ss_pred HHhhhccCCcceeEEEEecCCc--ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeecc---C
Confidence 8888899999999999987654 79999999999999999887777777665 3456689999998887776543 4
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
+.+.+||.....++..+...+..+...|||+|.. ..|++.|.|..|++||....+....+.. ..+...++|+++|.
T Consensus 187 G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~ 263 (673)
T KOG4378|consen 187 GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGT 263 (673)
T ss_pred CeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCce
Confidence 5799999998888877766666689999999976 5677889999999999998887777754 34778999999999
Q ss_pred EEEEEeCCCcEEEEEccCCceeeeeecCCcccccccc
Q 001776 656 LLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (1015)
Q Consensus 656 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 692 (1015)
+|+.|+..|.|..||++..+.++..+..|...+..+.
T Consensus 264 ~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 9999999999999999998889999988888766653
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=169.82 Aligned_cols=338 Identities=17% Similarity=0.247 Sum_probs=229.6
Q ss_pred ccccCCCCEEEEEEcc-----CCCEEEEEECCCeEEEEEccCCceeeeeeEE--ecccCceeEEEEecCCC--ceEEEEE
Q 001776 413 LSSDYTASVNRVMWSP-----DGTLFGVAYSKHIVHLYTYHGGDELRNHLEI--EAHVGSVNDLAFSYPNK--QLSVVTC 483 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~sp-----dg~~las~~~dg~v~iwd~~~~~~~~~~~~~--~~h~~~V~~~~~s~~~~--~~~l~s~ 483 (1015)
+..+|+.+|..++|++ .-..+|+++. ..+.+|+.....-++.+..+ ..|......++|+-|.. +.++|.|
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3578999999999986 2335555554 45899988765433322222 24777889999987643 3589999
Q ss_pred eCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeee---cCCCCceEEEEEC
Q 001776 484 GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYS 560 (1015)
Q Consensus 484 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~s 560 (1015)
+.-|.|+|.|+.++++...+.+|...|+.+.++|... +++++++.|..|++|++++..++..+ .+|...|.++.|+
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~-qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRP-QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCC-cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence 9999999999999999999999999999999998765 79999999999999999999888775 4577799999999
Q ss_pred CCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC
Q 001776 561 ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG 640 (1015)
Q Consensus 561 ~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 640 (1015)
++|.++++++.|. .|.+|++...+....+.. +..|+|++...-.- .-...+.+.. +.. -
T Consensus 191 ~~gd~i~ScGmDh----slk~W~l~~~~f~~~lE~-------s~~~~~~~t~~pfp--t~~~~fp~fs------t~d--i 249 (385)
T KOG1034|consen 191 LDGDRIASCGMDH----SLKLWRLNVKEFKNKLEL-------SITYSPNKTTRPFP--TPKTHFPDFS------TTD--I 249 (385)
T ss_pred CCCCeeeccCCcc----eEEEEecChhHHhhhhhh-------hcccCCCCccCcCC--cccccccccc------ccc--c
Confidence 9999999999865 599999986544333322 23455554321100 0012222221 122 3
Q ss_pred CCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccccccccccc
Q 001776 641 GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720 (1015)
Q Consensus 641 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1015)
|...|.|+.|- |.++++-+-++.|..|..-.-.+.+..........
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~-------------------------------- 295 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT-------------------------------- 295 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce--------------------------------
Confidence 36688899987 57899888899999998732111111111100000
Q ss_pred ccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEE
Q 001776 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 800 (1015)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i 800 (1015)
.....+.++. -.-.....+|.|-++.|+.|...|.+
T Consensus 296 ------------------------------------------Ti~~~~~~~~--c~iWfirf~~d~~~~~la~gnq~g~v 331 (385)
T KOG1034|consen 296 ------------------------------------------TILGEFDYPM--CDIWFIRFAFDPWQKMLALGNQSGKV 331 (385)
T ss_pred ------------------------------------------eeeeEeccCc--cceEEEEEeecHHHHHHhhccCCCcE
Confidence 0000111110 11223456778889999999999999
Q ss_pred EEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCC
Q 001776 801 KLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMM 872 (1015)
Q Consensus 801 ~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~ 872 (1015)
.+||+...+.. +...+. ..-....|...+||.||..|+... |++|.-||.-
T Consensus 332 ~vwdL~~~ep~-----------------~~ttl~----~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 332 YVWDLDNNEPP-----------------KCTTLT----HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEECCCCCCc-----------------cCceEE----eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99998753221 111111 111456788999999999988877 8999999853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=176.03 Aligned_cols=310 Identities=11% Similarity=0.105 Sum_probs=222.2
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC----ceeeecCCCCceEEEEECCCC-CEEEEE
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG----SRVDYDAPGHSSTMMAYSADG-ARLFSC 569 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~s~~~-~~l~~~ 569 (1015)
.+-......+-+..+|++++|+|..+.+++++|+.-|.|-+||+++.+ ....+..|..+|.++.|+|.. ..+++.
T Consensus 174 ~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 174 DDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeee
Confidence 333444556668899999999999988899999999999999996332 345677888899999999954 577777
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEeeCC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce-eEEEecCCCCCCcce
Q 001776 570 GTNKEGESYLVEWNESEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL-LASIDADGGLQASPC 647 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~v~~ 647 (1015)
+.|| +|++-|++.+.....+... ....+..+.|+.+...++.++.=|.+.+||++++.- ...+..| ...|..
T Consensus 254 SyDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~s 327 (498)
T KOG4328|consen 254 SYDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKITS 327 (498)
T ss_pred ccCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh--hcccce
Confidence 7655 6999999876543333332 122566778888888888888778999999987654 4455555 558999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccccccccccccccccc
Q 001776 648 IRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAM 726 (1015)
Q Consensus 648 v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1015)
++++| ...+||+++.|++.+|||++.-. +....
T Consensus 328 v~~NP~~p~~laT~s~D~T~kIWD~R~l~-------~K~sp--------------------------------------- 361 (498)
T KOG4328|consen 328 VALNPVCPWFLATASLDQTAKIWDLRQLR-------GKASP--------------------------------------- 361 (498)
T ss_pred eecCCCCchheeecccCcceeeeehhhhc-------CCCCc---------------------------------------
Confidence 99999 55789999999999999986431 10000
Q ss_pred ccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeecc
Q 001776 727 VGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWP 806 (1015)
Q Consensus 727 ~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~ 806 (1015)
.+..+ .|...|.+..|||.+..|++.+.|..|+|||..
T Consensus 362 -------------------------~lst~-----------------~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 362 -------------------------FLSTL-----------------PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred -------------------------ceecc-----------------cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 00111 288899999999999999999999999999853
Q ss_pred ccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCC
Q 001776 807 RNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPP 885 (1015)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~ 885 (1015)
.+.-|+...+........+ .--..--.+|.||..++++|. -..|-|+|-..++.+..+-....
T Consensus 400 --------------~~sa~~~p~~~I~Hn~~t~--RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~ 463 (498)
T KOG4328|consen 400 --------------CISAKDEPLGTIPHNNRTG--RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES 463 (498)
T ss_pred --------------cccccCCccceeeccCccc--ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc
Confidence 1122333333322211111 111223457999999999998 67899999998888888765443
Q ss_pred -CeeE-EEEcCCCCc-EEEEEEcCCeEEEEEcc
Q 001776 886 -AATF-LAFHPQDNN-IIAIGMEDSSIQIYNVR 915 (1015)
Q Consensus 886 -~i~~-l~~sp~d~~-~la~g~~dg~v~vwd~~ 915 (1015)
.|.+ ..|+| -+. +++-++..|.|+||--+
T Consensus 464 ~tI~~vn~~HP-~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 464 STIPSVNEFHP-MRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccccceeecc-cccceeccCCccceEEEEecC
Confidence 4544 47999 555 55555677889888644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-18 Score=179.61 Aligned_cols=589 Identities=11% Similarity=0.100 Sum_probs=343.1
Q ss_pred CCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC------C
Q 001776 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD------G 430 (1015)
Q Consensus 357 ~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g 430 (1015)
..-.++.|+|.| ++|-|+. ..|.|-|..+-+.+.. +.-|...|+.+.|.|- +
T Consensus 16 sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~ll 73 (1062)
T KOG1912|consen 16 SNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDLL 73 (1062)
T ss_pred ccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhcc
Confidence 345688999998 5676654 5688999888777664 6679999999999872 1
Q ss_pred ------CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecC---CCceEEEEEeCCCeEEEEEcCCCceEE
Q 001776 431 ------TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP---NKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 431 ------~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~---~~~~~l~s~s~dg~v~vwd~~~~~~~~ 501 (1015)
-.||++...|.|.+||...+..+. .+..|..++..++|-+. .+. +|+.-....++.+|+..+|+...
T Consensus 74 S~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 74 SPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred CccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceee
Confidence 267888889999999999887555 67789999999999763 333 66777777899999999999999
Q ss_pred EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCC------ceeeecC-CCC----------------------
Q 001776 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG------SRVDYDA-PGH---------------------- 552 (1015)
Q Consensus 502 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~-~~~---------------------- 552 (1015)
..........++.+.|-.. +.+..-+..|.+.+.+.-... ....+.. +..
T Consensus 150 k~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 150 KYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred ccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchh
Confidence 8877677777788877655 345555555666665542111 1111111 000
Q ss_pred ---ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeC
Q 001776 553 ---SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDM 627 (1015)
Q Consensus 553 ---~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~--~~l~~~~~dg~i~vwd~ 627 (1015)
....++|+|.-+.++.....+ .+.++|++-..++....-..+ .+.-+.+-|++ ..+++.-.||.+.+|-.
T Consensus 229 fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 012356788766666555544 399999988877777665554 45556666665 57888889999999976
Q ss_pred CCC----------------ceeEEEecCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEccCCceeeeeecC-Cccccc
Q 001776 628 DNV----------------NLLASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILANADGIRLLRTVES-RTFDAS 689 (1015)
Q Consensus 628 ~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~ 689 (1015)
+.. +....+..... ......+..|. ...++..-.+|...+|.+.+| +....... ......
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~-~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~-ri~~~~~s~~iel~~ 381 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEE-FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNG-RIHLDYRSSSIELVL 381 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechh-cccceeecCCCChhhhhhhhhcchhHHHhhhcC-CcCcccccccccccc
Confidence 542 22222211111 12223333443 445555567888999999876 22211111 000000
Q ss_pred ccccccee------ccccccccccccccccccccc--ccccccccccCCCCCC-CCcccccccccccccceeeeeecccc
Q 001776 690 RVASAAIV------KAPAIGTFGSANANVGTSLGE--RTAPAAAMVGMSNDSR-NFTDVKPKIADEAVEKSRIWKLTEIT 760 (1015)
Q Consensus 690 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~v~iw~~~~~~ 760 (1015)
........ .-+.++.+|+- .+...+. +..|..+...-.+.+. .......++.|...|+|.++|+....
T Consensus 382 pf~f~~~~~~v~k~~l~~LS~dg~h---~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~ 458 (1062)
T KOG1912|consen 382 PFDFNLSTKLVGKTSLISLSDDGSH---SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA 458 (1062)
T ss_pred cccccCceeehhhccccchhhcCCC---CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh
Confidence 00000000 00011111100 0011111 1112112211112111 11123466789999999999998654
Q ss_pred CCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccC--cEEEEeeccccCCCCCCceecccCceecCCCCCccccccCC
Q 001776 761 EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1015)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~ 838 (1015)
....+. .|...|.++.|....+++-.+... .... .....+.+-|+.+|......-.
T Consensus 459 v~~~fs-------vht~~VkgleW~g~sslvSfsys~~n~~sg---------------~vrN~l~vtdLrtGlsk~fR~l 516 (1062)
T KOG1912|consen 459 VAASFS-------VHTSLVKGLEWLGNSSLVSFSYSHVNSASG---------------GVRNDLVVTDLRTGLSKRFRGL 516 (1062)
T ss_pred hhhhhc-------ccccceeeeeeccceeEEEeeecccccccc---------------ceeeeEEEEEcccccccccccC
Confidence 433333 388999999999888755444431 1000 1112345667777764432211
Q ss_pred CCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEc-CC---------------CCcEEE
Q 001776 839 DTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFH-PQ---------------DNNIIA 901 (1015)
Q Consensus 839 ~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~s-p~---------------d~~~la 901 (1015)
....+.+|+.+..|..|+||+... +.-+.+||+++..+++...-...-|+.++|+ |. ..+.++
T Consensus 517 ~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv 596 (1062)
T KOG1912|consen 517 QKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV 596 (1062)
T ss_pred CCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence 224678999999999999999999 8889999998887776655444558999998 31 112333
Q ss_pred EEEcCCeEEEEEcc-cc------eE-EEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCC
Q 001776 902 IGMEDSSIQIYNVR-VD------EV-KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGR 973 (1015)
Q Consensus 902 ~g~~dg~v~vwd~~-~~------~~-~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~ 973 (1015)
..+.| .+++.+. ++ .. ....+.....+..++| .+..|+.|+.+|.+.+||+....... ..-...+
T Consensus 597 ~ds~e--s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~ 669 (1062)
T KOG1912|consen 597 LDSVE--SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSPDP 669 (1062)
T ss_pred ecccc--chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCCCc
Confidence 33322 2233221 11 11 0111111122334566 47789999999999999976533111 0001111
Q ss_pred ccccCCceEEEEccCCCEEEEEeCCeEEEEEcCCceEeccC
Q 001776 974 TASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 974 ~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g~~l~~~ 1014 (1015)
........+.|....+++-....+-+||.+....+..+
T Consensus 670 ---ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si 707 (1062)
T KOG1912|consen 670 ---RAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI 707 (1062)
T ss_pred ---hhhheecccCCCCceEEEEecCcceecccccceeeeee
Confidence 12233344455444455544455677777766666544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=174.21 Aligned_cols=261 Identities=17% Similarity=0.233 Sum_probs=192.7
Q ss_pred cCCCeeEEEeccC---CCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC-C
Q 001776 355 QGSAVKSMDFHPV---QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-G 430 (1015)
Q Consensus 355 h~~~V~~~~~sp~---g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g 430 (1015)
|...-..++|+-+ +.-++|.|+.-|.|+|.|+.+++.... +.+|...|+.+.|.|+ .
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~-------------------~~ghG~sINeik~~p~~~ 148 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN-------------------YRGHGGSINEIKFHPDRP 148 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc-------------------eeccCccchhhhcCCCCC
Confidence 6677888888754 445888888999999999999987765 7899999999999995 5
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE---------
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--------- 501 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~--------- 501 (1015)
+++++|+.|..|++|++++..++..+.-+.+|.+.|.++.|+++|. +|++|+.|.++++|++...+...
T Consensus 149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~ 226 (385)
T KOG1034|consen 149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS 226 (385)
T ss_pred cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence 7899999999999999999999987777889999999999999999 89999999999999987332110
Q ss_pred -------------------EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCCceEEEEECC
Q 001776 502 -------------------IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSA 561 (1015)
Q Consensus 502 -------------------~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~ 561 (1015)
+-.-|...|.|+.|.. +++++-+-++.|..|.....+. ...... |
T Consensus 227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp-----------~ 291 (385)
T KOG1034|consen 227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKP-----------P 291 (385)
T ss_pred CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCC-----------C
Confidence 1123566666666643 4788888888888886521111 110000 1
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EEEecC
Q 001776 562 DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDAD 639 (1015)
Q Consensus 562 ~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~ 639 (1015)
++..- .+.-++...+.. .....+|.|-++.|+.|...|.|++||++..++. .++...
T Consensus 292 es~~T-----------i~~~~~~~~c~i----------Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 292 ESATT-----------ILGEFDYPMCDI----------WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred cccee-----------eeeEeccCccce----------EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 11000 122223222211 1122456777899999999999999999987653 334444
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 640 GGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
.....|...+|+.||..|+..++|++|.-||..
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 456679999999999999999999999999853
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.9e-19 Score=177.34 Aligned_cols=264 Identities=12% Similarity=0.097 Sum_probs=205.1
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCc--ceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR--ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
.|.++.|+.....++++-+.|..|++|.-... +.... . .+.+ ..-.|++......|+++
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~----------------~-k~~g--d~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV----------------R-KLTG--DNAFCVACASQSLYEIS 96 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCcccee----------------e-cccc--chHHHHhhhhcceeeec
Confidence 48999999887645555566888999985433 11111 0 1222 24455555555689999
Q ss_pred EECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC-CCEEEEe
Q 001776 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVYSIC 514 (1015)
Q Consensus 436 ~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~-~~v~~i~ 514 (1015)
|+..+.|+|||++...+.+ .+.+|...|+++.++.... +|++++..|.|.|..+.++....+|.... ..|.-+.
T Consensus 97 gG~~~~Vkiwdl~~kl~hr---~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAKLIHR---FLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred cCcCceeeehhhHHHHHhh---hccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 9999999999999654444 6889999999999998888 89999999999999999998888887543 4455788
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCCCceee-ecCCCCceEEEEECCCCC-EEEEEeeCCCCCceEEEEeCCCCeeeEE
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVD-YDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd~~~~~~~~~ 592 (1015)
|++... .+|.+++.+|.|.+||+........ ...|..+...++|+|... .|++.+.|. .|.+||....+....
T Consensus 172 ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dk----ki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 172 YSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDK----KINIYDIRSQASTDR 246 (673)
T ss_pred cccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccc----eEEEeecccccccce
Confidence 887664 5788999999999999987766654 345777899999999665 556677654 699999998777666
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcCCC
Q 001776 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 593 ~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
+...+ +...++|+++|.+|++|...|.|+.||++.. .++.++..| ...|++++|-+..
T Consensus 247 l~y~~--Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah--~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 247 LTYSH--PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAH--DASVTRVAFQPSP 305 (673)
T ss_pred eeecC--CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeec--ccceeEEEeeecc
Confidence 65543 7889999999999999999999999999864 577777766 5679999998865
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=165.95 Aligned_cols=287 Identities=14% Similarity=0.184 Sum_probs=208.8
Q ss_pred eeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCC-ccccccccccCCCCEEEEEEc-------cCC
Q 001776 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACS-MPLQASLSSDYTASVNRVMWS-------PDG 430 (1015)
Q Consensus 359 V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~s-------pdg 430 (1015)
...+.|||||. -+.+-+.|..+.+|++...-.-... .... .+.+..+-......|...+|- |+.
T Consensus 52 ~kgckWSPDGS-ciL~~sedn~l~~~nlP~dlys~~~-------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t 123 (406)
T KOG2919|consen 52 LKGCKWSPDGS-CILSLSEDNCLNCWNLPFDLYSKKA-------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST 123 (406)
T ss_pred hccceeCCCCc-eEEeecccCeeeEEecChhhcccCC-------CCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence 34789999999 5566788999999998532111000 0000 000111112234678888875 678
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCc---eeEEEEecCCCceEEEEEeCCCeEEEEEc-CCCceEE--E-e
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDA-VTGTKQY--I-F 503 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~---V~~~~~s~~~~~~~l~s~s~dg~v~vwd~-~~~~~~~--~-~ 503 (1015)
.++|+.+.+.-|++||.-+|+...... .-.|... -.+++|+|||. .| .++....|+++|+ +.|+.-. . +
T Consensus 124 ~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--ql-faGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QL-FAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred ceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eE-eecccceEEEeeccCCCCCCcchhhh
Confidence 899999999999999999998554322 2234443 46899999999 44 4566789999998 4554321 1 1
Q ss_pred ----eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 504 ----EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 504 ----~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
.+..+-|.+++|+|... ..++.++...++-+|.-........+-+|.+.|+.+.|.++|+.|++++.- +..|
T Consensus 200 ~~~k~gq~giisc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkI 275 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKI 275 (406)
T ss_pred hcccccccceeeeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeE
Confidence 23367788889988664 589999999999999988888888888999999999999999999998753 4469
Q ss_pred EEEeCCC-CeeeEEeeCCCCCCeEE--EEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCC
Q 001776 580 VEWNESE-GAVKRTYHGLGKRSVGV--VQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 580 ~iwd~~~-~~~~~~~~~~~~~~i~~--v~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
..||++. +.++..+..|....-.. ....|++++|++|+.||.|++||+.+ +..+..+..+ ...++.++++|--.
T Consensus 276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~--sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY--SDTVNGVSLNPIMP 353 (406)
T ss_pred EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc--cccccceecCcccc
Confidence 9999985 45666666654422222 45578999999999999999999998 7767777655 67899999999988
Q ss_pred EEEEEeCC
Q 001776 656 LLAVSTND 663 (1015)
Q Consensus 656 ~l~~~~~d 663 (1015)
++|+++..
T Consensus 354 ilatssGq 361 (406)
T KOG2919|consen 354 ILATSSGQ 361 (406)
T ss_pred eeeeccCc
Confidence 88877644
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=175.59 Aligned_cols=265 Identities=11% Similarity=0.175 Sum_probs=188.3
Q ss_pred CeeEEEeccC-------CCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCC---CccccccccccCCCCEEEEEEc
Q 001776 358 AVKSMDFHPV-------QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC---SMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 358 ~V~~~~~sp~-------g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
...|++|... |+ ++|.|+.|..|.|||+.=...+.- .+.+-..... ....+.....+|+..|.+++|+
T Consensus 175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEecccccccccc-ceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 3456666443 45 899999999999999853221110 0000000000 0001222345899999999999
Q ss_pred cC-CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE-EEeeC
Q 001776 428 PD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ-YIFEG 505 (1015)
Q Consensus 428 pd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~~~~ 505 (1015)
.+ ...||+|+.|.+|++||+.+|++.. ++..|.+.|.+++|+|.... +|++|+.|++|.+.|.+..... ..++
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk- 327 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWK- 327 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEE-
Confidence 85 5588999999999999999998776 67789999999999998877 8999999999999999853322 2333
Q ss_pred CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC-CceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
..+.|..++|.+... ..++++..||+++-+|++.. ++......|..+|.++++++....+++.+ ..+..+.+|++
T Consensus 328 ~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~ 403 (463)
T KOG0270|consen 328 FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKF 403 (463)
T ss_pred eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEee
Confidence 467799999988765 67888899999999999987 66788999999999999998766554432 23557999998
Q ss_pred CCCeeeEEeeCC-CCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCcee
Q 001776 585 SEGAVKRTYHGL-GKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 585 ~~~~~~~~~~~~-~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~ 633 (1015)
............ .-+...|.++.|+-. .++.||..+.++|||+.+...+
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 754332111110 111355667777764 4556777788999999876654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=163.03 Aligned_cols=286 Identities=15% Similarity=0.189 Sum_probs=198.7
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc------------eeEEEecCCCCCCcceEEEc-------CCCCEEEEEe
Q 001776 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN------------LLASIDADGGLQASPCIRFN-------KEGILLAVST 661 (1015)
Q Consensus 601 i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~v~~v~~s-------~~~~~l~~~~ 661 (1015)
.....|+|||..|++-+.|..+.+|++...- ...++.... ...|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~e-g~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQE-GETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEecc-CCEEEEEEeeeccccCCCccceeeecc
Confidence 4457899999999999999999999975311 111111111 2245555553 5667788888
Q ss_pred CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccc
Q 001776 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKP 741 (1015)
Q Consensus 662 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1015)
.+.-|++||..+| ++...+.+.
T Consensus 131 r~~PIh~wdaftG-~lraSy~~y--------------------------------------------------------- 152 (406)
T KOG2919|consen 131 RDQPIHLWDAFTG-KLRASYRAY--------------------------------------------------------- 152 (406)
T ss_pred ccCceeeeecccc-ccccchhhh---------------------------------------------------------
Confidence 8888888888877 332222211
Q ss_pred ccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccC
Q 001776 742 KIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQA 821 (1015)
Q Consensus 742 l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 821 (1015)
|.. ..-....+++|+|||..|++|. ...|+++|+.++.+......+
T Consensus 153 -------------dh~----------------de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t---- 198 (406)
T KOG2919|consen 153 -------------DHQ----------------DEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT---- 198 (406)
T ss_pred -------------hhH----------------HhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh----
Confidence 100 0112345899999999888766 558999998654221111100
Q ss_pred ceecCCCCCccccccCC-CCCCCCCccEEEEccCC-CEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCc
Q 001776 822 PQLWQPPSGILMTNDIS-DTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898 (1015)
Q Consensus 822 ~~~~d~~~~~~~~~~l~-~~~~~~~v~~l~~s~dg-~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~ 898 (1015)
. .. ..+..+-+.+++|+|-. +.+|+++ ..++-||.-..++++..+-+|.+.|+.+.|.+ +|+
T Consensus 199 -----------~---~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn 263 (406)
T KOG2919|consen 199 -----------V---TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGN 263 (406)
T ss_pred -----------h---hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcC
Confidence 0 00 11256788999999965 4899998 78899999889999999999999999999999 888
Q ss_pred EEEEEE-cCCeEEEEEccc-ceEEEEEcCccC-CeEEEEE--eCCCCEEEEEeCCCcEEEEEccC-cccccceEEEecCC
Q 001776 899 IIAIGM-EDSSIQIYNVRV-DEVKTKLKGHQK-RITGLAF--SNTLNVLVSSGADSQLCVWSTDG-WEKQASKFLTIPNG 972 (1015)
Q Consensus 899 ~la~g~-~dg~v~vwd~~~-~~~~~~l~~h~~-~v~~l~~--spdg~~l~s~s~dg~v~vWd~~~-~~~~~~~~~~~~~~ 972 (1015)
.|.+|. .|..|..||++. +.++..|..|.+ .=..|.| .|++++|++|+.||.|++||+++ |... ...
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~-----sv~-- 336 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV-----SVT-- 336 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc-----ccc--
Confidence 888876 466899999974 567777877766 3334444 58999999999999999999998 4411 112
Q ss_pred CccccCCceEEEEccCCCEEEEEeCCeEEE
Q 001776 973 RTASALADTRVQFHLDQTHLLAVHETQIAI 1002 (1015)
Q Consensus 973 ~~~~~~~v~~l~fs~dg~~l~~~~d~~i~v 1002 (1015)
..++..+..+++.|--..+++++...++-
T Consensus 337 -~~~sd~vNgvslnP~mpilatssGqr~f~ 365 (406)
T KOG2919|consen 337 -GNYSDTVNGVSLNPIMPILATSSGQRIFK 365 (406)
T ss_pred -ccccccccceecCcccceeeeccCceeec
Confidence 22336789999999988888876554443
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=166.81 Aligned_cols=181 Identities=12% Similarity=0.176 Sum_probs=136.8
Q ss_pred CCCCEEEEEEccCCC-EEEEEECCCeEEEEEccCCc------eeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeE
Q 001776 417 YTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGD------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 417 h~~~V~~l~~spdg~-~las~~~dg~v~iwd~~~~~------~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
...+|..+.|.+++. .||||+.|..|+||.+..+. .+.....+..|...|+++.|+|+|. ++++|+.+|.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v 89 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEV 89 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceE
Confidence 346899999999777 99999999999999886532 3444556889999999999999999 89999999999
Q ss_pred EEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEE
Q 001776 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 569 (1015)
.+|-... -++. +.. . -...+.. .| .......+|...+..++|+|++.+++++
T Consensus 90 ~lWk~~~-----------~~~~-----~~d---~--e~~~~ke--~w-----~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 90 FLWKQGD-----------VRIF-----DAD---T--EADLNKE--KW-----VVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred EEEEecC-----------cCCc-----ccc---c--hhhhCcc--ce-----EEEEEecccccchhhhhccCCCceeeee
Confidence 9998543 0010 000 0 0000000 11 1122334577889999999999999999
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 001776 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 632 (1015)
+.| +.+++||+..|.....+..|.. .+..++|.|-++++++-+.|...+.+.+.....
T Consensus 142 s~d----ns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 142 SVD----NSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ecc----ceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 864 4699999999999999988877 888999999999999999888666666554333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=169.49 Aligned_cols=237 Identities=15% Similarity=0.222 Sum_probs=186.9
Q ss_pred ccccCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccCCcee----eeeeEEecccCceeEEEEecCCCceEEEEEeCCC
Q 001776 413 LSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDEL----RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~----~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg 487 (1015)
+..||+++|..++|+| +...||+|+.|.+|.||.+..+... .....+.+|...|--++|+|.-.+ .|++++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 4789999999999999 7788999999999999999765432 234478999999999999998877 799999999
Q ss_pred eEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC-ceEEEEECCCCCEE
Q 001776 488 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SSTMMAYSADGARL 566 (1015)
Q Consensus 488 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l 566 (1015)
+|.+||+.+|+.+.++. |..-|.+++|+.+ |.++++++.|..|+|||.+++.....-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 99999999999999988 9999999999654 58999999999999999999888777655544 455677888888 7
Q ss_pred EEEeeCCCCCceEEEEeCCCCee-eEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCce-eEEEecCCCCC
Q 001776 567 FSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNL-LASIDADGGLQ 643 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~~~~~ 643 (1015)
++.+.++-.+..+-+||...-.. +..........|.---|.++.+.++.+| .|+.|+-|.+.+..+ +.-+.......
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~e 310 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKE 310 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCC
Confidence 77777777788999999765432 2222222333566667889999888877 899999999977653 33333223344
Q ss_pred CcceEEEcCCC
Q 001776 644 ASPCIRFNKEG 654 (1015)
Q Consensus 644 ~v~~v~~s~~~ 654 (1015)
+-..+.|-|..
T Consensus 311 pQRG~g~mPKR 321 (472)
T KOG0303|consen 311 PQRGMGFMPKR 321 (472)
T ss_pred ccccccccccc
Confidence 55677777743
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-18 Score=166.44 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=189.2
Q ss_pred CEEEEEEcc-----CCCEEEEEE---CCCeEEEEEc-cCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEE
Q 001776 420 SVNRVMWSP-----DGTLFGVAY---SKHIVHLYTY-HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 420 ~V~~l~~sp-----dg~~las~~---~dg~v~iwd~-~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~ 490 (1015)
.|+.++|.. +.++||... ..|...+.-+ ++|+.-.....+.+|.++|..++|+|-+.+ .|++||.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 455555533 456666532 2223333332 234333333356799999999999998877 899999999999
Q ss_pred EEEcCCC-------ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCC
Q 001776 491 VWDAVTG-------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563 (1015)
Q Consensus 491 vwd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~ 563 (1015)
||++..+ +.+..+.+|+..|.-++|+|... +.|++++.|.+|.+||+.++.....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 9998654 44678899999999999999876 699999999999999999999888877 88899999999999
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe----CCCcEEEEeCCCCceeEEEecC
Q 001776 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----DEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 564 ~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
.++++.+.|+ .|++||.++++.+..-.+|.+..-..+.|-.++. +++.| .+..+-+||..+-+....+..-
T Consensus 186 s~l~TtckDK----kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCKDK----KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecccc----eeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 9999998765 5999999999999988888776666777888888 55544 6778999998765533333222
Q ss_pred CCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEccCCc
Q 001776 640 GGLQASPCIRFNKEGILLAVST-NDNGIKILANADGI 675 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~ 675 (1015)
.....|.---|.+|..++..++ .|+.||.|.+.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2234555566788888776555 89999999998763
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=162.02 Aligned_cols=275 Identities=14% Similarity=0.141 Sum_probs=197.5
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CCCEEEEEECCCeEEEEEcc
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYH 448 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~dg~v~iwd~~ 448 (1015)
.+|++-+.|.|++||..+++.+.. +++|...++.++|.. ....+.+|+.||+|++||++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 678889999999999999887765 788999999999987 46789999999999999999
Q ss_pred CCceeeeeeEEeccc-CceeEEEEecCCCceEEEEEe----CCCeEEEEEcCCCce-EEE-eeCCCCCEEEEeecccCCc
Q 001776 449 GGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG----EDRVIKVWDAVTGTK-QYI-FEGHESPVYSICPHHKENI 521 (1015)
Q Consensus 449 ~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~~~l~s~s----~dg~v~vwd~~~~~~-~~~-~~~h~~~v~~i~~~~~~~~ 521 (1015)
+....... .+..|. .+..+++....++ .+++|. .|-.|.+||++..+. +.. ...|...|++++|+|+.+
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p- 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP- 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence 87655433 355565 5677777766666 566664 467899999998766 544 457999999999999766
Q ss_pred cEEEEEeCCCeEEEEeCCCCCc---eeeecCCCCceEEEEECCCC-CEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC
Q 001776 522 QFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~ 597 (1015)
++|++|+.||.|.++|+..... ......+...|..+.|..++ +.|.+.+... ...+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~E----tf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHME----TFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccC----ceeEEEccCCChhhcccCcc
Confidence 7999999999999999876532 22333456679999998877 4566655433 48999999887554443321
Q ss_pred C---------CCeEEE-EEeC-CCCEEEEEeC-CCcEEEEeCC---CC---ceeEEEecCCCCCCcceEEEcCCCCEEEE
Q 001776 598 K---------RSVGVV-QFDT-TKNRFLAAGD-EFMIKFWDMD---NV---NLLASIDADGGLQASPCIRFNKEGILLAV 659 (1015)
Q Consensus 598 ~---------~~i~~v-~~~~-~~~~l~~~~~-dg~i~vwd~~---~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 659 (1015)
- ..-+-| +.+| +...++.++. -+...++-+. ++ +.+..+.+ ++...|.++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 0 000111 1223 3345555543 5555555433 33 33344443 34667889999999999999
Q ss_pred EeCCCcEEEEEccC
Q 001776 660 STNDNGIKILANAD 673 (1015)
Q Consensus 660 ~~~dg~i~iw~~~~ 673 (1015)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-16 Score=162.70 Aligned_cols=456 Identities=13% Similarity=0.150 Sum_probs=277.6
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEE------ecCCCceEEEEEeCCCeE
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~------s~~~~~~~l~s~s~dg~v 489 (1015)
.|...|-|+.|+.+...+.+++.+..+.-|++.+... .. +.-....|....+ -..+..-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4677788999998887777665555555556544321 10 1111111111111 001111168899999999
Q ss_pred EEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEE
Q 001776 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 569 (1015)
.+-+ +.++....+..|.+.+.+-.|++++ .-|++++.||.|++|.- ++-...++.....+|+|++|.|+.+.++.+
T Consensus 88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~dG--tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 88 VILN-KSARVERSISAHAAAISSGRWSPDG--AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred EEec-ccchhhhhhhhhhhhhhhcccCCCC--ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence 9998 7888888899999999999997666 56999999999999973 344444455556799999999999888877
Q ss_pred eeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEE
Q 001776 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~ 649 (1015)
..+ .+.+=.+.....+...+.|.+ -|.++.|++..+.+++||+|-..++||.. |..+..-..| ..+|++++
T Consensus 164 ~g~-----h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~--ey~ITSva 234 (737)
T KOG1524|consen 164 QGG-----HISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE--EYAITSVA 234 (737)
T ss_pred cCC-----eEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChh--ccceeeee
Confidence 532 477777776777778888887 89999999999999999999999999975 4444444444 56899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccC
Q 001776 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1015)
Q Consensus 650 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1015)
|+|+ ..++.++.. ++|+=.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~----------------------------------------------------------- 253 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSS----------------------------------------------------------- 253 (737)
T ss_pred eccc-cceeeeeee-eeeecC-----------------------------------------------------------
Confidence 9999 555555432 333100
Q ss_pred CCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeecccc-
Q 001776 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRN- 808 (1015)
Q Consensus 730 ~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~- 808 (1015)
...+.|..++||+||..++.|+..|.+.+-.+-..
T Consensus 254 --------------------------------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~ 289 (737)
T KOG1524|consen 254 --------------------------------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQ 289 (737)
T ss_pred --------------------------------------------CCccceEEEEEcCCCceeeccccCceEEEeeeehhh
Confidence 13456889999999999999999988776433221
Q ss_pred CCCCCCce--ecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCC
Q 001776 809 ERNSTGKA--TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886 (1015)
Q Consensus 809 ~~~~~~~~--~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~ 886 (1015)
-....++. .....+.+.|..++..-. +. ...+|...+. .-.+|+++....|++|.-........+.+....
T Consensus 290 l~~~n~~~t~~~r~~I~vrdV~~~v~d~--LE---~p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpiiidgre~t 362 (737)
T KOG1524|consen 290 LVSGNLKATSKSRKSITVRDVATGVQDI--LE---FPQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPIIIDGREDT 362 (737)
T ss_pred hhhccceeEeeccceEEeehhhhhHHHH--hh---Cccceeeeee--ceeEEEEEeccEEEEEecCCccCcEEEeccccc
Confidence 11111221 122245666666665422 11 2344444443 334566666666777654332221111111100
Q ss_pred ------------------eeE------EEEcCC----------------CCcEEEEEE--cCCeEEEEEc-ccceEEE--
Q 001776 887 ------------------ATF------LAFHPQ----------------DNNIIAIGM--EDSSIQIYNV-RVDEVKT-- 921 (1015)
Q Consensus 887 ------------------i~~------l~~sp~----------------d~~~la~g~--~dg~v~vwd~-~~~~~~~-- 921 (1015)
|+- ..++|. ....|+.-. +...+.+||. .+|+...
T Consensus 363 r~lieq~ek~fli~dgsSi~lytyegR~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDg 442 (737)
T KOG1524|consen 363 RNLIEQGEKYFLILDGSSIWLYTYEGRLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDG 442 (737)
T ss_pred hhHhhhhhhheEEecCcEEEEEEecCceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCc
Confidence 000 011110 111233221 2235666776 5554432
Q ss_pred EEcCccCCeEEEEEe----CCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeC
Q 001776 922 KLKGHQKRITGLAFS----NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE 997 (1015)
Q Consensus 922 ~l~~h~~~v~~l~~s----pdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 997 (1015)
.+--|...|..++.. ++.+.++.-+..+.+.|=.+++--.. .+.+++ | .-|..++|+..-+.|.--.|
T Consensus 443 k~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke-e~I~Ki--G-----TmVhtLawndttNiLcglqD 514 (737)
T KOG1524|consen 443 KSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE-EEIYKI--G-----TMVHTLAWNDTTNILCGLQD 514 (737)
T ss_pred cccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch-hhhhhh--h-----hhhhhhhhccccceeeeecc
Confidence 111255566666665 34466777777777777666552211 111121 1 23678999866665544599
Q ss_pred CeEEEEEcCCc
Q 001776 998 TQIAIYEAPKL 1008 (1015)
Q Consensus 998 ~~i~vwd~~~g 1008 (1015)
+.+.||-..+.
T Consensus 515 t~fsVWy~pn~ 525 (737)
T KOG1524|consen 515 TCFSVWYYPNE 525 (737)
T ss_pred ceEEEEEcCCc
Confidence 99999987543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=162.29 Aligned_cols=292 Identities=13% Similarity=0.162 Sum_probs=205.3
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC--CC-CceE
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PG-HSST 555 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~-~~i~ 555 (1015)
.++++-..|+|++||..+++.+..|+++...++.+.|......+.+.+++.||+|++||++.......+.. +. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 68888999999999999999999999999999999998754557899999999999999998776544333 22 3667
Q ss_pred EEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee-eEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc--
Q 001776 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAV-KRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN-- 631 (1015)
Q Consensus 556 ~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~-~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~-- 631 (1015)
+++.+.+++.++++..-...+..+.+||.+..+. +..+...+...|++++|+|.. +.|++|+.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7777777888888765555567899999998765 555544333499999999976 788999999999999987543
Q ss_pred --eeEEEecCCCCCCcceEEEcCCC-CEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccc
Q 001776 632 --LLASIDADGGLQASPCIRFNKEG-ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSA 708 (1015)
Q Consensus 632 --~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1015)
++.++. +...|.++.|..++ +.+.+-+..++..+|+++.+. ....+...........
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~-~~~~~~~~~~~~~d~r---------------- 261 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS-EETWLENPDVSADDLR---------------- 261 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC-hhhcccCccchhhhHH----------------
Confidence 223332 24468899999877 468888899999999999884 2222221111000000
Q ss_pred ccccccccccccccccccc-cCCCCCCCCccccccc-ccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcC
Q 001776 709 NANVGTSLGERTAPAAAMV-GMSNDSRNFTDVKPKI-ADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 786 (1015)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 786 (1015)
.....-.++ ...+ .+....+ .+..-+...++-+.................+|..-|+++.|..
T Consensus 262 ----------~~~~~dY~I~~~~~-----~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 262 ----------KEDNCDYVINEHSP-----GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV 326 (376)
T ss_pred ----------hhhhhhheeecccC-----CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc
Confidence 000000000 0001 1122233 3333567777766654444445555555566888899999999
Q ss_pred CCcEEEEeccCcEEEEeec
Q 001776 787 SGLAILALASNAVHKLWKW 805 (1015)
Q Consensus 787 dg~~l~~~~~dg~i~vw~~ 805 (1015)
.+..+.+|++||.+.+|..
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccceeeccCCCceEEEEec
Confidence 9999999999999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-16 Score=146.02 Aligned_cols=281 Identities=18% Similarity=0.226 Sum_probs=192.0
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 437 (1015)
.|.+-+|+|.++ ++++|+.+|+|.+..+.+-..-.. .+..........+|.++|+.++|. ..+|++|+
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 466778899998 789999999999999854221110 001111122357899999999998 45666665
Q ss_pred CCCeEEEEEccCCce---eeeeeE--Eeccc-----CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC
Q 001776 438 SKHIVHLYTYHGGDE---LRNHLE--IEAHV-----GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 438 ~dg~v~iwd~~~~~~---~~~~~~--~~~h~-----~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~ 507 (1015)
. |.|+-|....... .+...+ ..-|. -.|+++...|..+ -+++++.|+.++.||+++|+..++++||+
T Consensus 80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 4 9999998754321 111001 11122 3588999998887 57777899999999999999999999999
Q ss_pred CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC----------CceEEEEECCCCCEEEEEeeCCCCCc
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG----------HSSTMMAYSADGARLFSCGTNKEGES 577 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~~d~~~~~ 577 (1015)
..|.++.-.... ..+++|+.||++|+||.++.+....+.... .+|.+++ -+..++++++..
T Consensus 157 DYvH~vv~R~~~--~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp----- 227 (325)
T KOG0649|consen 157 DYVHSVVGRNAN--GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGP----- 227 (325)
T ss_pred ceeeeeeecccC--cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCC-----
Confidence 999999863332 479999999999999999988776544322 2444444 456788887643
Q ss_pred eEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC-CE
Q 001776 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG-IL 656 (1015)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~ 656 (1015)
.+.+|.++..+....+.-.. .+..+.|.. ..++++|..+.|.-|.+. |......+.. ...++...|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~--s~~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVE--STACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCC--ccceeeecccCCceEE
Confidence 49999999988887776543 466667754 478888888889999874 4443334332 3344555555433 34
Q ss_pred EEEEeCCCcEEEE
Q 001776 657 LAVSTNDNGIKIL 669 (1015)
Q Consensus 657 l~~~~~dg~i~iw 669 (1015)
+-.++..+.+.|+
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4455555566554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=194.34 Aligned_cols=259 Identities=13% Similarity=0.160 Sum_probs=201.8
Q ss_pred eEEEeccCCCeeEEEeccCCCe---EEEEEecCCeEEEEEcCCc---ceEeEeeeEEEeccCCCccccccccccCCCCEE
Q 001776 349 VVMTLNQGSAVKSMDFHPVQQI---LLVVGTNMGDVMLWEVGSR---ERIAVKSFKVWELGACSMPLQASLSSDYTASVN 422 (1015)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~---lla~g~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 422 (1015)
.+-.+.-...-..++|.+.|.. ++|.|..||.|.+||...- .... .......|++.|.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~ 120 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVL 120 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCcee
Confidence 3344445567789999998876 6899999999999998652 1110 0112567999999
Q ss_pred EEEEccCCC-EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE
Q 001776 423 RVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 423 ~l~~spdg~-~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 501 (1015)
.+.|++... +||+|+.||.|.|||+..-+...... -....+.|.+++|+..-.+ .|++++.+|.+.|||++..+.+-
T Consensus 121 gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 121 GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCccc
Confidence 999999655 99999999999999998754332111 1124567999999988776 79999999999999999998888
Q ss_pred EeeCCCC--CEEEEeecccCCccEEEEEeCC-C--eEEEEeCCCCCc-eeeecCCCCceEEEEECCCC-CEEEEEeeCCC
Q 001776 502 IFEGHES--PVYSICPHHKENIQFIFSTATD-G--KIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKE 574 (1015)
Q Consensus 502 ~~~~h~~--~v~~i~~~~~~~~~~l~s~~~d-g--~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~ 574 (1015)
.+..|.+ .+..+.|+|+.-. .+++++.| + .|.+||++.... ...+..|...|.++.|++.+ +++++++.|+
T Consensus 199 ~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~- 276 (1049)
T KOG0307|consen 199 KLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDN- 276 (1049)
T ss_pred ccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCC-
Confidence 7776654 4678899998764 45555544 3 499999987654 44567888999999999976 7777777644
Q ss_pred CCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCc
Q 001776 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 631 (1015)
.|.+|+.++++.+..+....+ .+..+.|+|... .+++++-||.|-||.+....
T Consensus 277 ---~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 277 ---RIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ---CeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 699999999999999988555 899999999876 77778899999999987654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-16 Score=159.76 Aligned_cols=185 Identities=16% Similarity=0.175 Sum_probs=146.3
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
...|.+.|.|-.|+|||.-|++++.||.|++|.-... ++. ++.....+|.|++|.|+... ++.|. .+.+.|=.
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRS--tl~Q~~~~v~c~~W~p~S~~--vl~c~-g~h~~IKp 172 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRS--TVVQNEESIRCARWAPNSNS--IVFCQ-GGHISIKP 172 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHH--HHhhcCceeEEEEECCCCCc--eEEec-CCeEEEee
Confidence 5689999999999999999999999999999986542 221 33446678999999999985 44332 34677767
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
+.....+-.++.|++-|.++.|++.. +++++|+.|-..++||-. +........|..+|++++|+|+ +.++.++.+
T Consensus 173 L~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n- 247 (737)
T KOG1524|consen 173 LAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN- 247 (737)
T ss_pred cccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-
Confidence 77777777889999999999998776 699999999999999965 5666677778889999999999 556655532
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEe
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd 626 (1015)
+++ +.....+.|..++|++||..+++|...|.+.+-.
T Consensus 248 ----t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 248 ----TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ----eee------------ecCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 233 3344445889999999999999999988876644
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-18 Score=172.45 Aligned_cols=297 Identities=19% Similarity=0.266 Sum_probs=231.1
Q ss_pred EEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-
Q 001776 351 MTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP- 428 (1015)
Q Consensus 351 ~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp- 428 (1015)
..|. |.+.|..+.|...|. ++++|+.|..|.+|||..++.... ...+|...|....|-|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPF 196 (559)
T ss_pred hcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCC
Confidence 3444 999999999999999 889999999999999998876543 2578999999999988
Q ss_pred -CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe---e
Q 001776 429 -DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF---E 504 (1015)
Q Consensus 429 -dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~---~ 504 (1015)
+.+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+... .|.+++.|+.+.-.|++++.....+ .
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeec
Confidence 5668999999999999887654444444467789999999999999887 7999999999999999887654333 2
Q ss_pred CCCC---CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce------eeec------CCCCceEEEEECCCCCEEEEE
Q 001776 505 GHES---PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR------VDYD------APGHSSTMMAYSADGARLFSC 569 (1015)
Q Consensus 505 ~h~~---~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~------~~~~------~~~~~i~~~~~s~~~~~l~~~ 569 (1015)
.+.. ...+++.+|... ..+++++.|..+++||.+..... ..+. ...-.|++++|+.++.-+++.
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred cCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 2333 467788777654 58999999999999998753322 1111 122378999999877766666
Q ss_pred eeCCCCCceEEEEeCCC--C----------eeeE-EeeCCCCC-CeEEE-EEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001776 570 GTNKEGESYLVEWNESE--G----------AVKR-TYHGLGKR-SVGVV-QFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~--~----------~~~~-~~~~~~~~-~i~~v-~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
..|. .|+++.... | ..+. .+++|... .|..+ -|.|...++++|+.-|.|.||+-.+++.+.
T Consensus 355 YnDe----~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 355 YNDE----DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eccc----ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 5433 488885432 2 1223 37888642 35555 467889999999999999999999999999
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.+.+..+ .|+|+.-+|--..||+++-|..|+||-..+.
T Consensus 431 ~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred Hhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 9987754 8999999999999999999999999987544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=164.00 Aligned_cols=238 Identities=15% Similarity=0.195 Sum_probs=162.3
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
+.||++.|+|+.|+.||.+|++|+.|-.+.|||.-..+.+.. .-.+|...|.++.|-|....-.+++|..|..|+++|
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs--I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS--ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceeee--eecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 789999999999999999999999999999999987665543 236899999999999976655899999999999999
Q ss_pred cCC----------CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee----------ecCCCCc
Q 001776 494 AVT----------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD----------YDAPGHS 553 (1015)
Q Consensus 494 ~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~----------~~~~~~~ 553 (1015)
+.. ....+.+..|...|..++..+... +.+.+++.||+|+-+|++....... +...--.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 974 233456678999999998766544 6899999999999999986322110 1111125
Q ss_pred eEEEEECCCCCE-EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCC------CCeEEE-EEeCCCCEEEEEeCCCcEEEE
Q 001776 554 STMMAYSADGAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK------RSVGVV-QFDTTKNRFLAAGDEFMIKFW 625 (1015)
Q Consensus 554 i~~~~~s~~~~~-l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~------~~i~~v-~~~~~~~~l~~~~~dg~i~vw 625 (1015)
..++..+|...+ |++|+. +...++||.+... ..+..... ....++ .|+|.+- ...+|.+
T Consensus 203 lk~ltisp~rp~~laVGgs----dpfarLYD~Rr~l--ks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn~~gn~--- 269 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGS----DPFARLYDRRRVL--KSFRSDGTMNTCPPKDCRCVRYFSPGHL----KNSQGNL--- 269 (758)
T ss_pred eeeeeecCCCCceEEecCC----Cchhhhhhhhhhc--cCCCCCccccCCCCcccchhheecCccc----cCccccc---
Confidence 678899997655 555543 4578999953221 11111100 011112 1222211 1111111
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeee
Q 001776 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (1015)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 680 (1015)
... ...++-++|+|+|.-|.+.-....|+++|+..++.....
T Consensus 270 -------~~~------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 270 -------DRY------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -------ccc------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 000 113467899999988777777779999999887544433
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=154.50 Aligned_cols=308 Identities=14% Similarity=0.157 Sum_probs=195.5
Q ss_pred eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE
Q 001776 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669 (1015)
Q Consensus 590 ~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 669 (1015)
...+++|.. .++++.|..++ ++++|...|.|++|++.+......+..++ ...|+.+..-|+ ..+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~-~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g-~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSS-SVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFG-RLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccc-hheehhhccch-hhhcccccceEEEEEeecCccchhhhhhc-cceeeceeecCC-cchhhcCCCceEEEE
Confidence 345556665 78889888776 48999999999999999998888887543 457888888886 567788899999999
Q ss_pred EccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccccc
Q 001776 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (1015)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 749 (1015)
++.-+ ..+.. |+ +..+. -.|-+..-.. .+.+.. ...+.++. +.|.
T Consensus 83 ~ia~s-~~i~i---~S-----i~~ns----lgFCrfSl~~---------~~k~~e-qll~yp~r------------gsde 127 (323)
T KOG0322|consen 83 TIAYS-AFISI---HS-----IVVNS----LGFCRFSLVK---------KPKNSE-QLLEYPSR------------GSDE 127 (323)
T ss_pred EccCc-ceEEE---ee-----eeccc----cccccceecc---------CCCcch-hheecCCc------------ccch
Confidence 98764 11111 11 10111 1111111000 000000 00000000 0000
Q ss_pred ceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcC-CCc--EEEEeccCcEEEEeeccccCCCCCCceecccCceecC
Q 001776 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN-SGL--AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826 (1015)
Q Consensus 750 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-dg~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d 826 (1015)
+.+-|. ..+.......-+..+..+.+.+..+.. +++ .+++|.++|.+.+||+..+.. +.+
T Consensus 128 -~h~~D~---g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-------------~~~ 190 (323)
T KOG0322|consen 128 -THKQDG---GDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-------------IIQ 190 (323)
T ss_pred -hhhhcc---CccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-------------eec
Confidence 001110 111111111112233455566665332 222 456777899999999876411 111
Q ss_pred CCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCC--Cce--eEEeCCCCCCeeEEEEcCCCCcEEE
Q 001776 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MTTFMPPPPAATFLAFHPQDNNIIA 901 (1015)
Q Consensus 827 ~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~--~~~--~~~l~~~~~~i~~l~~sp~d~~~la 901 (1015)
......+..... .|..+|.++.|.+.-..=++|+ +.++..|++.. +.+ ...+.-....|..+.+-| |++++|
T Consensus 191 ~~~~~kv~~~~a--sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlA 267 (323)
T KOG0322|consen 191 LPQSSKVESPNA--SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILA 267 (323)
T ss_pred cccccccccchh--hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEe
Confidence 111111111122 3899999999987766667777 78899998754 222 222333455688899999 999999
Q ss_pred EEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q 001776 902 IGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 902 ~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~ 956 (1015)
++++|+.|+||+.++..++..|..|.+.|.+++|+||...+|++|.|++|.+|++
T Consensus 268 TAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 268 TAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999999999999999999999986
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.5e-17 Score=156.61 Aligned_cols=329 Identities=13% Similarity=0.203 Sum_probs=215.9
Q ss_pred EEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeE
Q 001776 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 556 ~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 634 (1015)
-.+|||+|+++++++.. .+.+-|..+-+..+.+.... .|.-+.|..|..+++++- .++.|.+|++...+-..
T Consensus 13 ~c~fSp~g~yiAs~~~y-----rlviRd~~tlq~~qlf~cld--ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-----RLVIRDSETLQLHQLFLCLD--KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC 85 (447)
T ss_pred ceeECCCCCeeeeeeee-----EEEEeccchhhHHHHHHHHH--HhhheeeeccceeeeeeeeccceEEEEEeecceeEE
Confidence 36799999999998743 58888888877666655533 466688988888887765 78899999999888777
Q ss_pred EEecCCCCCCcceEEEcCCCCEE-EEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccc
Q 001776 635 SIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVG 713 (1015)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1015)
.+.. +...+..++|||||+.+ .+..-+-.|.+|.+.+..-..-....+..
T Consensus 86 kIde--g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~--------------------------- 136 (447)
T KOG4497|consen 86 KIDE--GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV--------------------------- 136 (447)
T ss_pred Eecc--CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc---------------------------
Confidence 7764 36788999999999655 56667889999999876322222211111
Q ss_pred cccccccccccccccCCCCCCCCcccccccccccccce--------eeeeeccccCCcceeEeccCCCcCCccEEEEEEc
Q 001776 714 TSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS--------RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (1015)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v--------~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 785 (1015)
....|+++ ++..+.++..... +-|.+- +.+ ....-..+.+.|+
T Consensus 137 -----------kg~~f~~d------g~f~ai~sRrDCkdyv~i~~c~~W~ll--------~~f----~~dT~DltgieWs 187 (447)
T KOG4497|consen 137 -----------KGYAFHPD------GQFCAILSRRDCKDYVQISSCKAWILL--------KEF----KLDTIDLTGIEWS 187 (447)
T ss_pred -----------eeEEECCC------CceeeeeecccHHHHHHHHhhHHHHHH--------Hhc----CCCcccccCceEC
Confidence 11223333 2233222221111 112211 011 1133455678888
Q ss_pred CCCcEEEEeccC--cEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-
Q 001776 786 NSGLAILALASN--AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS- 862 (1015)
Q Consensus 786 ~dg~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s- 862 (1015)
|||..|++-..- -.|..|. ..-.+..++|||.+++|++|+
T Consensus 188 Pdg~~laVwd~~Leykv~aYe-------------------------------------~~lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 188 PDGNWLAVWDNVLEYKVYAYE-------------------------------------RGLGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred CCCcEEEEecchhhheeeeee-------------------------------------eccceeEEEeccccceEEeecc
Confidence 888877654331 1111111 234567788888888888888
Q ss_pred CCeEEEEeCCCCce------------------------------------------------------------eEEe--
Q 001776 863 GGKISLFNMMTFKT------------------------------------------------------------MTTF-- 880 (1015)
Q Consensus 863 dg~i~iwd~~~~~~------------------------------------------------------------~~~l-- 880 (1015)
|+.++|.+--+.+. +..+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 87777755211110 0011
Q ss_pred ----CCCCCCeeEEEEcCCCCcEEEEEEcC--CeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001776 881 ----MPPPPAATFLAFHPQDNNIIAIGMED--SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954 (1015)
Q Consensus 881 ----~~~~~~i~~l~~sp~d~~~la~g~~d--g~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vW 954 (1015)
..+...+..++|++ |..++++-.+. +.+-+||+...++...+. ...+|....|.|....|+.+.....+++|
T Consensus 311 ~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 11223467899999 99898887543 479999999877666554 56789999999999999988888889999
Q ss_pred EccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eC
Q 001776 955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HE 997 (1015)
Q Consensus 955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d 997 (1015)
...... ++..+.... .|..++|..+|..++.. .|
T Consensus 389 ~psg~~-----~V~vP~~GF----~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 389 APSGPR-----VVGVPKKGF----NIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred cCCCce-----EEecCCCCc----eeeeEEecCCCcEEEEEcCC
Confidence 988732 445444333 49999999999999984 44
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=157.74 Aligned_cols=296 Identities=10% Similarity=0.132 Sum_probs=211.2
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCE
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (1015)
++|.+.|.++.||.+++ +||+|+.|..+++|+++.--..++ .++.+ ..-..|...|.|++|....++
T Consensus 53 ~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~-~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIG-VMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCce-eccCccccceEEEEEccCCee
Confidence 56999999999999988 889999999999999865322221 00111 012356789999999999999
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-e--EEEeeCCCCC
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K--QYIFEGHESP 509 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~--~~~~~~h~~~ 509 (1015)
+.+|+.+++|...|+++.+.+.... -....+.|+.+..+|..+ .+++.+.++.|.+||.+... . +..+......
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~ 196 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKN 196 (609)
T ss_pred EecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCcc
Confidence 9999999999999999987665221 122345899999999977 89999999999999987654 2 2222333455
Q ss_pred EEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeee-------cCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-------DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 510 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
...+.|+|... .+|++.+..+-+-+||.+........ ......-.++.|+|+|..+++.-... .-.+|
T Consensus 197 F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~----~P~~~ 271 (609)
T KOG4227|consen 197 FYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK----CPLYF 271 (609)
T ss_pred ceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC----CCEEe
Confidence 67778888765 68999999999999999865543221 11111235678999999998765322 24567
Q ss_pred eCCCCee-eEEeeCCCC-----CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-----------------------cee
Q 001776 583 NESEGAV-KRTYHGLGK-----RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-----------------------NLL 633 (1015)
Q Consensus 583 d~~~~~~-~~~~~~~~~-----~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-----------------------~~~ 633 (1015)
|+-+.++ +..+..... ..+.+++|..+- .+++|+.+-.|++|.+... +.+
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKEL 350 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheeccee
Confidence 7665333 333332221 134556776554 5899999999999987421 122
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
..+.+| ...++.|.|+|...+|++.+-.+.+++|...
T Consensus 351 ~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 351 TVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred EEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 344544 6678999999999999999999999999754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=149.49 Aligned_cols=292 Identities=15% Similarity=0.265 Sum_probs=210.1
Q ss_pred ceeEEEeccCCCeeEEEec--cCCCeEEEEEec----CCeEEEEEc--CCcceEeEeeeEEEeccCCCccccccccccCC
Q 001776 347 KTVVMTLNQGSAVKSMDFH--PVQQILLVVGTN----MGDVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYT 418 (1015)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~s--p~g~~lla~g~~----dg~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 418 (1015)
.+.+..+...-.+.++.|| |+.+..+|.|+. .+.|.|-.+ .+++.+.. --..|.
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~ 96 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHP 96 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCC
Confidence 3456677777789999999 566667898874 345555544 33433322 124688
Q ss_pred CCEEEEEEccCCC-----EEEEEECCCeEEEEEccCCc-eeeeeeE-----EecccCceeEEEEecCCCceEEEEEeCCC
Q 001776 419 ASVNRVMWSPDGT-----LFGVAYSKHIVHLYTYHGGD-ELRNHLE-----IEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1015)
Q Consensus 419 ~~V~~l~~spdg~-----~las~~~dg~v~iwd~~~~~-~~~~~~~-----~~~h~~~V~~~~~s~~~~~~~l~s~s~dg 487 (1015)
-+++.+.|.||.. +||+++. .+|+|.+...+ .+..... -..+..++++..|+.-..+ +|.++|-|-
T Consensus 97 YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDT 173 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDT 173 (364)
T ss_pred CCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccC
Confidence 9999999999863 5666543 59999987421 1211111 2346678999999987766 899999999
Q ss_pred eEEEEEcCCCce---EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCcee-eecCC--CCceEEEEECC
Q 001776 488 VIKVWDAVTGTK---QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAP--GHSSTMMAYSA 561 (1015)
Q Consensus 488 ~v~vwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~--~~~i~~~~~s~ 561 (1015)
+..|||+++|.. ...+-.|...|..++|... ..+.+++++.||.+|++|++..+... .+... ..+...++|++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk 252 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK 252 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc
Confidence 999999998733 4567789999999999763 34799999999999999999765533 23332 34778889987
Q ss_pred C-CCEEEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCce------
Q 001776 562 D-GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVNL------ 632 (1015)
Q Consensus 562 ~-~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~~------ 632 (1015)
. -+++++...| ...|.+.|++.. .++..+.+|.. .|..++|.|.. ..|.++|+|..+.+||+...-.
T Consensus 253 qDpnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 253 QDPNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CCchHHhhhhcC---CceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 5 4566666654 335999999875 67788888887 99999999976 7889999999999999975322
Q ss_pred eEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEE
Q 001776 633 LASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKI 668 (1015)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~i 668 (1015)
+..+. ....|+.+.|++ .+.+++.+.. +.+.+
T Consensus 329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 22222 245789999997 5677877653 34444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=173.43 Aligned_cols=251 Identities=14% Similarity=0.206 Sum_probs=189.4
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEcc-----CCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-----GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~-----~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg 487 (1015)
.+..|...|+.++|.|....|++|+.||++++|+++ ....+.+..+|.+|.++|.|+++.+++. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 366799999999999999999999999999999993 2344667779999999999999999999 799999999
Q ss_pred eEEEEEcCCC----------ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC--CceE
Q 001776 488 VIKVWDAVTG----------TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG--HSST 555 (1015)
Q Consensus 488 ~v~vwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~ 555 (1015)
+|+.|++... .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.... ..-.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 9999965411 2345788999999999998777 4799999999999998776554 2222222 2233
Q ss_pred EEEECCCC-CEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC------CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 556 MMAYSADG-ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 556 ~~~~s~~~-~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
++.+.... ...++... .+.-.+++.........+.... ...+..+..+|.+.+.+++..|+.|+++|..
T Consensus 444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 44443222 11222111 1112233333333333332211 1246667889999999999999999999999
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+++++.....| ...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence 99999988866 778999999999999999999999999998665
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-15 Score=164.52 Aligned_cols=199 Identities=13% Similarity=0.161 Sum_probs=133.0
Q ss_pred EEEEEEcCCCcEEEEecc-CcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 779 VSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 779 i~~l~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
...++|+|+|+++++++. ++.+.+|++... +... .... .+. +......++++|+|++
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~-----g~~~-------------~~~~-~~~---~~~~~~~~~~~p~g~~ 139 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKD-----GIPV-------------APIQ-IIE---GLEGCHSANIDPDNRT 139 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCC-----CCCC-------------Ccee-ecc---CCCcccEeEeCCCCCE
Confidence 457899999998888775 788999987521 0000 0000 011 2234677899999999
Q ss_pred EEEEc--CCeEEEEeCCCCceeE-------EeCCCCCCeeEEEEcCCCCcEEEEEEc-CCeEEEEEccc--c--eEEEEE
Q 001776 858 VMSAS--GGKISLFNMMTFKTMT-------TFMPPPPAATFLAFHPQDNNIIAIGME-DSSIQIYNVRV--D--EVKTKL 923 (1015)
Q Consensus 858 la~~s--dg~i~iwd~~~~~~~~-------~l~~~~~~i~~l~~sp~d~~~la~g~~-dg~v~vwd~~~--~--~~~~~l 923 (1015)
+++++ ++.|.+||+.+...+. ... .......++|+| ++++++++.. ++.|.+|+++. + +.+..+
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 87766 6899999997633221 111 123467899999 8999888876 89999999973 3 334444
Q ss_pred cCcc------CCeEEEEEeCCCCEEEEEeC-CCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-
Q 001776 924 KGHQ------KRITGLAFSNTLNVLVSSGA-DSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV- 995 (1015)
Q Consensus 924 ~~h~------~~v~~l~~spdg~~l~s~s~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~- 995 (1015)
..+. .....+.++|||++|+++.. ++.|.+|+++.........-....+. ....++|+|||++|+++
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~-----~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET-----QPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred ecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc-----cCCceEECCCCCEEEEEE
Confidence 3221 12346889999999998864 78899999965432111111122222 24579999999999995
Q ss_pred -eCCeEEEEEcC
Q 001776 996 -HETQIAIYEAP 1006 (1015)
Q Consensus 996 -~d~~i~vwd~~ 1006 (1015)
.+++|.+|+++
T Consensus 293 ~~~~~v~v~~~~ 304 (330)
T PRK11028 293 QKSHHISVYEID 304 (330)
T ss_pred ccCCcEEEEEEc
Confidence 58899999874
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=173.34 Aligned_cols=265 Identities=12% Similarity=0.195 Sum_probs=188.4
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
.|.+.|++++|+|... .+++++.||++.+|+++....-....+ .+...+.+|.++|.|+++++++..+
T Consensus 292 s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~-----------epi~tfraH~gPVl~v~v~~n~~~~ 359 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDV-----------EPILTFRAHEGPVLCVVVPSNGEHC 359 (577)
T ss_pred cchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccce-----------eeeEEEecccCceEEEEecCCceEE
Confidence 3999999999999998 789999999999999943211110000 1112378999999999999999999
Q ss_pred EEEECCCeEEEEEccCCc-------eeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC
Q 001776 434 GVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~-------~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h 506 (1015)
.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++|+.||+++.|+...... .+|...
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~ 436 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEP 436 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCc
Confidence 999999999999664211 1112235789999999999999888 699999999999999766555 334322
Q ss_pred C--CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC-------CCCceEEEEECCCCCEEEEEeeCCCCCc
Q 001776 507 E--SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-------PGHSSTMMAYSADGARLFSCGTNKEGES 577 (1015)
Q Consensus 507 ~--~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~d~~~~~ 577 (1015)
. +.-.++.+..... ...++...-+.--++++........+.. ....+..+.+.|.+...+++..++
T Consensus 437 ~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~---- 511 (577)
T KOG0642|consen 437 KEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDR---- 511 (577)
T ss_pred cccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCC----
Confidence 1 2223344322221 1122222222222333333322222211 112567788999998888887654
Q ss_pred eEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001776 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
.|+++|..++.++.....|.. .++++++.|+|.++++++.|+.+++|.+....++.....|
T Consensus 512 ~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 512 SIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 599999999999999998887 8999999999999999999999999999877666555443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-18 Score=181.03 Aligned_cols=280 Identities=18% Similarity=0.292 Sum_probs=215.0
Q ss_pred EEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCC
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1015)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (1015)
+.++|..+|.|+.|...|. .+++|+.|..|+||.++++.++.. +.||.+.|+.++.+.+.
T Consensus 185 rLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccchhh
Confidence 4466999999999999999 789999999999999999998876 78999999999999999
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEE---eeC-C
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI---FEG-H 506 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~---~~~-h 506 (1015)
.++|+++.|..|++|.+.++..+. .+.+|.+.|++++|+|- .+.+.||++++||.+-.-.+.. +.. .
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCccc
Confidence 999999999999999999998777 78899999999999984 4778999999999871111111 111 1
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCC-EEEEEeeCCCCCceEEEEeCC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA-RLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
..-+.++.| ..++..+++++.|+.-..|.+..... +...+.-+.++.+-. +.+++- .+..+.+|++.
T Consensus 316 ~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 316 KDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLY 383 (1113)
T ss_pred ccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecc
Confidence 233444444 34456789999999988886542111 111111222222322 222222 24468899999
Q ss_pred CCeeeEEeeCCCCCCeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001776 586 EGAVKRTYHGLGKRSVGVVQFDTTKNR-FLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
+|...+...+|.+ .+..+.++|-... ..+++.||...|||+-.|.+++..... ...+....||++|..++...+-|
T Consensus 384 ~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred cchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCC
Confidence 9999999999987 8899999997654 456889999999999999988877633 34667789999999999888889
Q ss_pred cEEEEEccCC
Q 001776 665 GIKILANADG 674 (1015)
Q Consensus 665 ~i~iw~~~~~ 674 (1015)
.++|.....+
T Consensus 461 ql~i~g~gqs 470 (1113)
T KOG0644|consen 461 QLYILGTGQS 470 (1113)
T ss_pred ceEEeccCCC
Confidence 9999876554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=151.13 Aligned_cols=247 Identities=16% Similarity=0.200 Sum_probs=182.0
Q ss_pred cccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEe-cccCceeEEEEecCCCceEEEEEeCCCeEE
Q 001776 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~ 490 (1015)
.++.+|.+.|+++.|-.+++ |.+|...|.|++|++.+..... .+. .|...|+.+.-.|++. +.+-+.|+.+.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~ 80 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLI 80 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEE
Confidence 34778999999999998876 8899999999999999876544 455 5778899999999865 89999999999
Q ss_pred EEEcCCCceEE--------------Eee---------------------------------------CCCCCEEEEeecc
Q 001776 491 VWDAVTGTKQY--------------IFE---------------------------------------GHESPVYSICPHH 517 (1015)
Q Consensus 491 vwd~~~~~~~~--------------~~~---------------------------------------~h~~~v~~i~~~~ 517 (1015)
+|++.-+..+. .+. +..+.+.+..+..
T Consensus 81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 99987532211 000 0111222222111
Q ss_pred c-CCccEEEEEeCCCeEEEEeCCCCCcee----------eecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 518 K-ENIQFIFSTATDGKIKAWLYDNLGSRV----------DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 518 ~-~~~~~l~s~~~dg~i~vwd~~~~~~~~----------~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
. ...-++++|.++|.+.+||+.++..+. ....+..++.++.+.+....=++++.+ ..+..|.+..
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~----dkl~~~Sl~~ 236 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD----DKLVMYSLNH 236 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc----ccceeeeecc
Confidence 1 111356788899999999999874433 234456688888887755554555443 2477776653
Q ss_pred --Cee-eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 587 --GAV-KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 587 --~~~-~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
+.+ +..........+..+.+-||++.++++|.|+.|+||+.++.+++..+..| ...|++++|+|+...+|+++.|
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCC
Confidence 221 22222223336788899999999999999999999999999999999987 6789999999999999999999
Q ss_pred CcEEEEEc
Q 001776 664 NGIKILAN 671 (1015)
Q Consensus 664 g~i~iw~~ 671 (1015)
+.|.+|++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-14 Score=141.62 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=185.1
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC--CeEEEEEc
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDA 494 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d--g~v~vwd~ 494 (1015)
....+..+.|+.|...|..|+.|| -++|+...-.... ........|..+-|+. . ++|..+.+ +.+++.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSS--S--LvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSS--S--LVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeeccc--c--eeEEEecCCCceEEEEEc
Confidence 345678888999999999999999 6888876543211 2222334566777774 3 34444433 46999999
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC---CCceEEEEECCCCCEEEEEee
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP---GHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
+.+..+..+. ...+|.++.++. +.|+++-.+. |+|||+++.+...++... ...+.++++++.+.+++.-+.
T Consensus 76 Kk~~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s 149 (391)
T KOG2110|consen 76 KKKTTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS 149 (391)
T ss_pred ccCceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC
Confidence 9998888776 456788888754 3466555544 999999998887765543 234555666666678887643
Q ss_pred CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
- ..+.|.+||..+-+.+..+..|.+ .+.+++|+++|..|+++++.|+ |||+++.+|+.+..+........|.+++|
T Consensus 150 ~--t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 150 T--TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred C--CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 2 245699999999999999998887 9999999999999999998886 79999999999999976544567889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCC
Q 001776 651 NKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 651 s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+|++++|++.++.++|+||.+...
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEeccc
Confidence 999999999999999999998754
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-14 Score=155.90 Aligned_cols=272 Identities=13% Similarity=0.178 Sum_probs=177.1
Q ss_pred EEEEEecCCeEEEEEcCC-cceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE-CCCeEEEEEcc
Q 001776 371 LLVVGTNMGDVMLWEVGS-RERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY-SKHIVHLYTYH 448 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~dg~v~iwd~~ 448 (1015)
++++...|+.|.+||+.+ ++...... + .+.+....++++||+++|++++ .++.|.+|++.
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~ 65 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA 65 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC
Confidence 455557799999999964 33221111 1 2335677899999999987764 47889999997
Q ss_pred CCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCeEEEEEcCC-Cc---eEEEeeCCCCCEEEEeecccCCccE
Q 001776 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVT-GT---KQYIFEGHESPVYSICPHHKENIQF 523 (1015)
Q Consensus 449 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~v~vwd~~~-~~---~~~~~~~h~~~v~~i~~~~~~~~~~ 523 (1015)
....+....... ..+....++|+|+++ ++++++ .++.|.+|++.+ +. .+..+.+ ......++++++ +++
T Consensus 66 ~~g~l~~~~~~~-~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~--g~~ 139 (330)
T PRK11028 66 DDGALTFAAESP-LPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPD--NRT 139 (330)
T ss_pred CCCceEEeeeec-CCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCC--CCE
Confidence 322222111221 334567899999999 555554 588999999864 32 2333332 234556777654 456
Q ss_pred EE-EEeCCCeEEEEeCCCCCceee------ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC--C--eeeEE
Q 001776 524 IF-STATDGKIKAWLYDNLGSRVD------YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE--G--AVKRT 592 (1015)
Q Consensus 524 l~-s~~~dg~i~vwd~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~--~--~~~~~ 592 (1015)
++ +...++.|.+||+++.+.... ....+.....++|+|+|++++++.. ..+.|.+|++.. + +.+..
T Consensus 140 l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 140 LWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred EEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEEE
Confidence 65 555679999999986432211 1112345678999999999988763 245799999873 3 23333
Q ss_pred eeCCCC-----CCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCc----eeEEEecCCCCCCcceEEEcCCCCEEEEEeC
Q 001776 593 YHGLGK-----RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN----LLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 593 ~~~~~~-----~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 662 (1015)
+..... .....+.++|++++++++. .++.|.+|++.... .+..... ......++++|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEc
Confidence 332111 1223588999999999986 57899999986543 2222221 124568999999999998775
Q ss_pred -CCcEEEEEcc
Q 001776 663 -DNGIKILANA 672 (1015)
Q Consensus 663 -dg~i~iw~~~ 672 (1015)
+++|.+|++.
T Consensus 294 ~~~~v~v~~~~ 304 (330)
T PRK11028 294 KSHHISVYEID 304 (330)
T ss_pred cCCcEEEEEEc
Confidence 8899999875
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-15 Score=165.78 Aligned_cols=251 Identities=14% Similarity=0.132 Sum_probs=184.5
Q ss_pred cCCCCEEEEEEcc-CCCEEEEEECCCeEEEEEccCCce--eeee-eEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 416 DYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDE--LRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 416 ~h~~~V~~l~~sp-dg~~las~~~dg~v~iwd~~~~~~--~~~~-~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
.-...|+|+.|+| +..++|.|..+|.|.+||+..+.. .... .....|..+|+.+.|..+-...-+++++.||.|+.
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 3568999999999 778889999999999999988765 2211 12346899999999987654334899999999999
Q ss_pred EEcCCCceE------EEee------CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeC---CCCC-----ceeeecCCC
Q 001776 492 WDAVTGTKQ------YIFE------GHESPVYSICPHHKENIQFIFSTATDGKIKAWLY---DNLG-----SRVDYDAPG 551 (1015)
Q Consensus 492 wd~~~~~~~------~~~~------~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~---~~~~-----~~~~~~~~~ 551 (1015)
|+++.-... .... .-...++++.|.+... ..++.|+.+|.|.--+- +... ....+..|.
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 987643221 1111 1234578888877655 68999999999877322 2211 122455677
Q ss_pred CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC-CCeeeEEeeCCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCC
Q 001776 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 552 ~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~ 629 (1015)
+.|+++.++|-+..++..+.| -++++|... ...++..+..+.+ .+++++|||... .|+++..||.|.+||+..
T Consensus 399 g~v~~v~~nPF~~k~fls~gD----W~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 399 GPVYAVSRNPFYPKNFLSVGD----WTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred cceEeeecCCCccceeeeecc----ceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 799999999987766555433 369999987 6666666666665 699999999874 556666899999999975
Q ss_pred Cc--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 630 VN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 630 ~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.. ++.+.... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 474 ~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 474 DDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 44 44444333 556788999999999999999999999999654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=148.53 Aligned_cols=241 Identities=21% Similarity=0.363 Sum_probs=171.7
Q ss_pred cCCCCCCCccccccccc-----eeeeeeCCCCCC-----CccccCCCC-------CceeEEEec--cCCCeeEEEeccCC
Q 001776 308 RSRPFGISDEVNNLSVN-----ILPVAYTPQSLG-----QSSYSTDDL-------PKTVVMTLN--QGSAVKSMDFHPVQ 368 (1015)
Q Consensus 308 ~~~~~~~~~~v~~~~~~-----i~~~~~s~~g~~-----~~~~~~~~~-------~~~~~~~~~--h~~~V~~~~~sp~g 368 (1015)
...++.|..|||.++.. |++-.|+-.+.. .+.|....- +-+++..+. +-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 34455788899976432 344444422221 334433221 123344444 55699999999999
Q ss_pred CeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CCCEEEEEECCCeEEEEE
Q 001776 369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYT 446 (1015)
Q Consensus 369 ~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~dg~v~iwd 446 (1015)
..+++. .|..|.+|+++.+..+.. .+ ....-.+|....++-+||| ||+.+++. .|+++..||
T Consensus 136 ~klasm--~dn~i~l~~l~ess~~va-ev------------~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D 199 (370)
T KOG1007|consen 136 DKLASM--DDNNIVLWSLDESSKIVA-EV------------LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD 199 (370)
T ss_pred CeeEEe--ccCceEEEEcccCcchhe-ee------------cccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence 865443 489999999988776321 11 1111234677888999999 88888876 578899999
Q ss_pred ccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC-CceEEEeeCCCCCEEEEeecccCCccEEE
Q 001776 447 YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIF 525 (1015)
Q Consensus 447 ~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~ 525 (1015)
+++..+...+ -.+|...|..+.|+|+.+. +|+||+.||.|++||.+. ..++.++.+|...|.++.|++..+ ++++
T Consensus 200 ~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-qLiL 275 (370)
T KOG1007|consen 200 LRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-QLIL 275 (370)
T ss_pred ccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-eEEE
Confidence 9987655432 3578899999999999887 899999999999999985 467889999999999999999877 7999
Q ss_pred EEeCCCeEEEEeCCCCC-----------------------------ceeeecCCCCceEEEEECCCCCEEEE
Q 001776 526 STATDGKIKAWLYDNLG-----------------------------SRVDYDAPGHSSTMMAYSADGARLFS 568 (1015)
Q Consensus 526 s~~~dg~i~vwd~~~~~-----------------------------~~~~~~~~~~~i~~~~~s~~~~~l~~ 568 (1015)
+++.|..|.+|....-. .+..+..|...|++++|+.-..++++
T Consensus 276 s~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFA 347 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFA 347 (370)
T ss_pred ecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEE
Confidence 99999999999653211 11245556678889999876666554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=166.62 Aligned_cols=272 Identities=15% Similarity=0.198 Sum_probs=197.2
Q ss_pred CccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCcccccccccc
Q 001776 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416 (1015)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (1015)
+..|+.+.- ...-..+.-...|+|+.|+|....++|.|+.+|+|.+||+..+....... .......
T Consensus 224 ~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~s 289 (555)
T KOG1587|consen 224 LLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVS 289 (555)
T ss_pred EEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------ccccccc
Confidence 344444443 56677788899999999999999899999999999999998876521100 0112457
Q ss_pred CCCCEEEEEEccCCC--EEEEEECCCeEEEEEccCCceeeeeeEE--e-------cccCceeEEEEecCCCceEEEEEeC
Q 001776 417 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNHLEI--E-------AHVGSVNDLAFSYPNKQLSVVTCGE 485 (1015)
Q Consensus 417 h~~~V~~l~~spdg~--~las~~~dg~v~iwd~~~~~~~~~~~~~--~-------~h~~~V~~~~~s~~~~~~~l~s~s~ 485 (1015)
|..+|+.+.|..+-. -+++++.||.|..|+++.-........+ . .-...+++++|.+...+ .++.|+.
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe 368 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTE 368 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcC
Confidence 999999999987544 4999999999999987643221110001 1 12346899999998877 7999999
Q ss_pred CCeEEEEE---cCCCc-----eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC-CCCceeeecCCCCceEE
Q 001776 486 DRVIKVWD---AVTGT-----KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 486 dg~v~vwd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~ 556 (1015)
+|.|..-+ ...+. ....+..|.++|+++.++|-.. ..+++++ |.++++|.-. .......+..+...+++
T Consensus 369 ~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTD 446 (555)
T ss_pred CcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeee
Confidence 99988733 22222 2335567899999999887664 3455555 9999999887 55666667777777999
Q ss_pred EEECCCCCEEEEEeeCCCCCceEEEEeCCCC--eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001776 557 MAYSADGARLFSCGTNKEGESYLVEWNESEG--AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~--~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~ 629 (1015)
++|||-...++++. +.++.|.+||+... .++.+.... ....+.+.|++.|+.+++|...|++++|++..
T Consensus 447 vaWSptrpavF~~~---d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATV---DGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEE---cCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999887766665 34667999998754 333333333 33667788999999999999999999999864
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-14 Score=155.80 Aligned_cols=317 Identities=11% Similarity=0.099 Sum_probs=200.1
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI 655 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 655 (1015)
++.+.+.|..+.+.+.++..... ....+.++|||+++++++.||.|.++|+.+++.+.++... ....++++++||+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G---~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG---GNPRGIAVSPDGK 90 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S---SEEEEEEE--TTT
T ss_pred CCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC---CCcceEEEcCCCC
Confidence 45799999999999999987654 3455789999999999999999999999999999998763 2357899999999
Q ss_pred EEEEEe-CCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCC
Q 001776 656 LLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1015)
Q Consensus 656 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1015)
+++++. .++.+.++|..+. +.++.+......
T Consensus 91 ~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~----------------------------------------------- 122 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP----------------------------------------------- 122 (369)
T ss_dssp EEEEEEEETTEEEEEETTT---EEEEEE--EE------------------------------------------------
T ss_pred EEEEEecCCCceeEeccccc-cceeeccccccc-----------------------------------------------
Confidence 998775 7899999999887 555544321100
Q ss_pred CCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEe-ccCcEEEEeeccccCCCCC
Q 001776 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNST 813 (1015)
Q Consensus 735 ~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~ 813 (1015)
......++.++..+|....++.. -+.+.+.+-|+...
T Consensus 123 -------------------------------------~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~----- 160 (369)
T PF02239_consen 123 -------------------------------------VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP----- 160 (369)
T ss_dssp -------------------------------------TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-----
T ss_pred -------------------------------------ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-----
Confidence 00023456778888888755544 44476666554321
Q ss_pred CceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc--CCeEEEEeCCCCceeEEeCC----CCCCe
Q 001776 814 GKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMP----PPPAA 887 (1015)
Q Consensus 814 ~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~l~~----~~~~i 887 (1015)
..+....+. .........|+|++++++++. ++.|-++|.++++.+..+.. |..+.
T Consensus 161 ----------------~~~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 161 ----------------KNLKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp ----------------SCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred ----------------cccceeeec---ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccccccc
Confidence 000000111 234556789999999987765 68999999999887766532 23333
Q ss_pred eEEEEcCC---------CCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEE----eCCCcEEEE
Q 001776 888 TFLAFHPQ---------DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS----GADSQLCVW 954 (1015)
Q Consensus 888 ~~l~~sp~---------d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~----s~dg~v~vW 954 (1015)
..+ .+|. .+...++.-....+.+||..+.+.++++....++ .-+..+|+++++.+. ...++|.++
T Consensus 222 ~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~vi 299 (369)
T PF02239_consen 222 ANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVI 299 (369)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEE
T ss_pred ccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEE
Confidence 332 1221 2223322333345678999999999999987666 778899999999987 455889999
Q ss_pred EccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE---eCCeEEEEEcCCceEeccC
Q 001776 955 STDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV---HETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 955 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~i~vwd~~~g~~l~~~ 1014 (1015)
|.++.+.. ..+..+.. ..+..+.|++||+++.++ .++.|.|||.+|.+.++++
T Consensus 300 D~~tl~~~----~~i~~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 300 DKKTLKVV----KTITPGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp ECCGTEEE----E-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred ECcCccee----EEEeccCC---CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 99996422 11111110 237899999999998885 4448999999999998875
|
... |
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-15 Score=146.70 Aligned_cols=254 Identities=11% Similarity=0.098 Sum_probs=181.0
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC---ceeeeeeEE-ecccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG---DELRNHLEI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~---~~~~~~~~~-~~h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
-+.+|.+.|+++.||.++++||+|+.|..+++|+++.- +..+++... ..|...|.|++|...+. ++.+|+.+++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGT 128 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCcce
Confidence 36789999999999999999999999999999998632 111111111 24668999999998777 8999999999
Q ss_pred EEEEEcCCCceEEEeeC--CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc---eeeecCCCCceEEEEECCCC
Q 001776 489 IKVWDAVTGTKQYIFEG--HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADG 563 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~ 563 (1015)
|...|+++.+.+..+.. ..+.|+.+..+|.. +.+++.+.++.|.+||.+.... .......+.....+.|+|..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 99999999998887752 23589999988874 6899999999999999987552 22333345578889999987
Q ss_pred CEEEEEeeCCCCCceEEEEeCCCCe-eeEEe---eCCCC--CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001776 564 ARLFSCGTNKEGESYLVEWNESEGA-VKRTY---HGLGK--RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1015)
Q Consensus 564 ~~l~~~~~d~~~~~~i~iwd~~~~~-~~~~~---~~~~~--~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 637 (1015)
..|+...... +-+-+||.+... .+..+ .+... .....+.|+|.|+.+++--....-.+||+.+..+...-.
T Consensus 207 P~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 207 PALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred ceeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 7666554322 237899987543 22221 11111 123467899999999887765566678887644332211
Q ss_pred cCC-----CCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 638 ADG-----GLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 638 ~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
-|. ....+.+++|..|- .+++|+++=.|++|.+...
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 111 12345677777554 4899999999999988643
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=166.83 Aligned_cols=305 Identities=16% Similarity=0.268 Sum_probs=208.9
Q ss_pred ceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC---CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC
Q 001776 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH---ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (1015)
Q Consensus 465 ~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 541 (1015)
+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+++....+..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 456678888887 6888887779999999999998877654 45688899888888889999999999999953211
Q ss_pred CceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc
Q 001776 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM 621 (1015)
Q Consensus 542 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~ 621 (1015)
. | +...++++. ..-++. ..+..+.. .-+.|.....+++++|+-..
T Consensus 1144 ~----------------~--~~~eLVTaw------------~~Ls~~----~~~~r~~~-~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1144 K----------------W--KKPELVTAW------------SSLSDQ----LPGARGTG-LVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred c----------------c--CCceeEEee------------cccccc----CccCCCCC-eeeehhhhCCeEEecCCeeE
Confidence 1 0 112233332 110111 11111111 33567777778888888889
Q ss_pred EEEEeCCCCceeEEEecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccc
Q 001776 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAP 700 (1015)
Q Consensus 622 i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1015)
|+|||......+..+.... ...|+++.-+- .|+.+++|..||.|++||.+.....
T Consensus 1189 IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d----------------------- 1244 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD----------------------- 1244 (1387)
T ss_pred EEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCcc-----------------------
Confidence 9999999888887776542 34556655443 5799999999999999998654110
Q ss_pred ccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCcc--
Q 001776 701 AIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMR-- 778 (1015)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-- 778 (1015)
..|..|. .|...
T Consensus 1245 ------------------------------------------------s~v~~~R------------------~h~~~~~ 1258 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYR------------------EHNDVEP 1258 (1387)
T ss_pred ------------------------------------------------ccceeec------------------ccCCccc
Confidence 1122222 13333
Q ss_pred EEEEEEcCCCcE-EEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 779 VSRLIYTNSGLA-ILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 779 i~~l~~s~dg~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
|..+.+.+.|-. |++|+.||.|++||+..... ...... .......+..+++.++++...
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-------------------e~~~~i-v~~~~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-------------------ETFLTI-VAHWEYGSALTALTVHEHAPI 1318 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcc-------------------ccccee-eeccccCccceeeeeccCCCe
Confidence 778888886655 99999999999999764200 000000 000001336899999999999
Q ss_pred EEEEcCCeEEEEeCCCCceeEEeCC-------CCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce
Q 001776 858 VMSASGGKISLFNMMTFKTMTTFMP-------PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE 918 (1015)
Q Consensus 858 la~~sdg~i~iwd~~~~~~~~~l~~-------~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~ 918 (1015)
+|+|+.+.|+||++. |+.+..++. ..+.+.|++|+| -.-++|+|+.|..|.||......
T Consensus 1319 iAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 999999999999985 444444332 235689999999 88899999999999999876543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-15 Score=165.22 Aligned_cols=256 Identities=13% Similarity=0.080 Sum_probs=183.6
Q ss_pred cccCCCCEEEEEEccCC-CEEEEEECCCeEEEEEccC----CceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 414 SSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHG----GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg-~~las~~~dg~v~iwd~~~----~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
+..|+..|..++.+++. .++++|+.||+|++|+... +...+...++......+.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 77899999999998755 9999999999999999863 123344445555677899999999999 7899999999
Q ss_pred EEEEEcCCC--c-----eEEEeeCC-CCCEEEE-eecccCCccEEEEEeCCCeEEEEeCCCCCceee--ecCCCCceEEE
Q 001776 489 IKVWDAVTG--T-----KQYIFEGH-ESPVYSI-CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMM 557 (1015)
Q Consensus 489 v~vwd~~~~--~-----~~~~~~~h-~~~v~~i-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~ 557 (1015)
|++.+++.. + +.+....+ .+.+.++ +|........++.+...+.|..||.+....... .....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 999998752 1 11222222 2334444 343333223788888899999999987665443 34455689999
Q ss_pred EECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC---CEEEEEe--CCCcEEEEeCCCCce
Q 001776 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK---NRFLAAG--DEFMIKFWDMDNVNL 632 (1015)
Q Consensus 558 ~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~ 632 (1015)
+.+|.+.+++.|.. .+.+.+||++-+.++.........++..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999875 44699999999998888776655678877776643 3455544 578899999999977
Q ss_pred eEEEecCC-----------------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 001776 633 LASIDADG-----------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGI 675 (1015)
Q Consensus 633 ~~~~~~~~-----------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~ 675 (1015)
...+.... +........+..-+..+.+|+.|..|+.||.....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 66654320 00111123333345688899999999999998763
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-17 Score=176.09 Aligned_cols=289 Identities=17% Similarity=0.224 Sum_probs=223.4
Q ss_pred eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEE
Q 001776 588 AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIK 667 (1015)
Q Consensus 588 ~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 667 (1015)
+.++.+.+|.. .|+|+.|...|.++++|+.|..++||...++.++....+| ...++.++.+.+..++++++.|..|+
T Consensus 181 k~ikrLlgH~n-aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh--s~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 181 KNIKRLLGHRN-AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH--SGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHhhhh-heeeeeeccccceEeecCccceeeeeeccchhhhccCCCC--ccccchhccchhhhhhhhcccCceEE
Confidence 44566778876 8999999999999999999999999999999999999877 77899999999999999999999999
Q ss_pred EEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccc
Q 001776 668 ILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEA 747 (1015)
Q Consensus 668 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1015)
+|.+.++ .++..+.+|++.+..+ +|+|. .+.+.
T Consensus 258 vWrl~~~-~pvsvLrghtgavtai------------------------------------afsP~----------~sss~ 290 (1113)
T KOG0644|consen 258 VWRLPDG-APVSVLRGHTGAVTAI------------------------------------AFSPR----------ASSSD 290 (1113)
T ss_pred EEecCCC-chHHHHhccccceeee------------------------------------ccCcc----------ccCCC
Confidence 9999999 8899999998776644 22222 36677
Q ss_pred ccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCC
Q 001776 748 VEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827 (1015)
Q Consensus 748 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~ 827 (1015)
||++++||..-.......+.. .......+.++.|-.++..+++++.|+....|.+..- .|
T Consensus 291 dgt~~~wd~r~~~~~y~prp~---~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-- 350 (1113)
T KOG0644|consen 291 DGTCRIWDARLEPRIYVPRPL---KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-- 350 (1113)
T ss_pred CCceEeccccccccccCCCCC---CcccccceeeeeccccccccccccCCcccccchhhHh---------------hh--
Confidence 899999997611100000111 1223466778888999999999999998888765421 11
Q ss_pred CCCccccccCCCCCCCCCccEEEEccCC-CEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEc
Q 001776 828 PSGILMTNDISDTNPEDAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (1015)
Q Consensus 828 ~~~~~~~~~l~~~~~~~~v~~l~~s~dg-~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~ 905 (1015)
+...+.-+.++.|- .+.+++- +-.+.+|++.+|.+.+.+.+|...+..+.++|.+..+..+++.
T Consensus 351 --------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 351 --------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred --------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 11122222222222 3444443 7789999999999999999999999999999988888889999
Q ss_pred CCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 906 DSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 906 dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
||...|||+..|..++...-..+.+...+||+||..++....-|.++|.....++
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999999987776654334557788999999999999999999998765554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-15 Score=141.30 Aligned_cols=269 Identities=14% Similarity=0.198 Sum_probs=194.1
Q ss_pred CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCEEEEEECC-------CeEEEEEccC
Q 001776 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLFGVAYSK-------HIVHLYTYHG 449 (1015)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d-------g~v~iwd~~~ 449 (1015)
|+.|.+-++..+.. .+..+++..|.+.|..++-+| |.+.|+++..+ ..+.||.+..
T Consensus 39 dNqVhll~~d~e~s----------------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe 102 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGS----------------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPE 102 (370)
T ss_pred cceeEEEEecCccc----------------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccc
Confidence 67777777665432 223334677899999999999 66677777552 2478998864
Q ss_pred Cce------eeeeeEEe-cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce-EEEee-----CCCCCEEEEeec
Q 001776 450 GDE------LRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFE-----GHESPVYSICPH 516 (1015)
Q Consensus 450 ~~~------~~~~~~~~-~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~-----~h~~~v~~i~~~ 516 (1015)
... +.....+. .+-+.|.|+.|.|++. .+++-. |..|.+|+++.+.. +..+. ++....++-+|+
T Consensus 103 ~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~--klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws 179 (370)
T KOG1007|consen 103 PLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD--KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS 179 (370)
T ss_pred ccCccccchhhHhhcCCHHHhCceeeEEEcCCCC--eeEEec-cCceEEEEcccCcchheeecccccccccceecccccC
Confidence 321 11111233 4566899999999998 566654 88999999988765 33332 355667788899
Q ss_pred ccCCccEEEEEeCCCeEEEEeCCCCCceeee-cCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC-eeeEEee
Q 001776 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVKRTYH 594 (1015)
Q Consensus 517 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~ 594 (1015)
|..+|+.+++. .|+++..||+++......+ ..|+..+..+.|+|+-.++++.+.| ++.|++||.+.. .++..+.
T Consensus 180 pHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD---dgyvriWD~R~tk~pv~el~ 255 (370)
T KOG1007|consen 180 PHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD---DGYVRIWDTRKTKFPVQELP 255 (370)
T ss_pred CCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC---CccEEEEeccCCCccccccC
Confidence 98888777665 5799999999988776554 4577789999999998776554432 557999999864 5778888
Q ss_pred CCCCCCeEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCc-----------------------------eeEEEecCCCCCC
Q 001776 595 GLGKRSVGVVQFDTTK-NRFLAAGDEFMIKFWDMDNVN-----------------------------LLASIDADGGLQA 644 (1015)
Q Consensus 595 ~~~~~~i~~v~~~~~~-~~l~~~~~dg~i~vwd~~~~~-----------------------------~~~~~~~~~~~~~ 644 (1015)
+|.. .+.++.|+|.- +.+++||.|..|.+|...+-. .+.++. .+.+.
T Consensus 256 ~HsH-WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDS 332 (370)
T KOG1007|consen 256 GHSH-WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDS 332 (370)
T ss_pred CCce-EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccc
Confidence 8876 89999999864 678889999999999763211 112222 34778
Q ss_pred cceEEEcCC-CCEEEEEeCCCcEEEEEcc
Q 001776 645 SPCIRFNKE-GILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 645 v~~v~~s~~-~~~l~~~~~dg~i~iw~~~ 672 (1015)
|++++|+.- .-.+|+-+.||.+.|=.+.
T Consensus 333 VY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 333 VYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999999984 4567788999999886553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-15 Score=166.48 Aligned_cols=235 Identities=12% Similarity=0.096 Sum_probs=162.6
Q ss_pred CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceee
Q 001776 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELR 454 (1015)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~ 454 (1015)
+..|.+||........ +..|...+.+.+|||||+.|+.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~~--------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQFI--------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCceE--------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 4689999987654321 46678899999999999999988654 369999998875322
Q ss_pred eeeEEecccCceeEEEEecCCCceEEEEE-eCCCeEEEE--EcCCCceEEEeeCCCCCEEEEeecccCCccEEEE-EeCC
Q 001776 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTC-GEDRVIKVW--DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS-TATD 530 (1015)
Q Consensus 455 ~~~~~~~h~~~V~~~~~s~~~~~~~l~s~-s~dg~v~vw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s-~~~d 530 (1015)
...+.+| ...++|+|||+ .|+.+ +.+|.+.|| |+.++. ...+..+...+....|++++ +.|+. +..+
T Consensus 243 -l~~~~g~---~~~~~wSPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~ 313 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDG--QSILFTSDRS 313 (429)
T ss_pred -EecCCCc---cCceeECCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCC--CEEEEEECCC
Confidence 1223333 44689999999 56554 467765555 665555 45566677777788886654 65554 4467
Q ss_pred CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 531 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
|...+|+++..........+.. ....|+|||+++++.+.+ .+.+||+.++......... ....+.|+|+|
T Consensus 314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG 383 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF---LDESPSISPNG 383 (429)
T ss_pred CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC---CCCCceECCCC
Confidence 8888888765333222222222 457899999999887643 2777999988765433222 22457899999
Q ss_pred CEEEEEeCCCcEEEEeC--CCCceeEEEecCCCCCCcceEEEcCC
Q 001776 611 NRFLAAGDEFMIKFWDM--DNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
+.++.++.++.+.+|++ .+|..+..+..+ ...+...+|+|-
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~--~g~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGS--DGQVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCC--CCCCCCcccCCC
Confidence 99999998898888875 357777777654 456788999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-15 Score=162.98 Aligned_cols=291 Identities=13% Similarity=0.203 Sum_probs=205.8
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CCCEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGV 435 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las 435 (1015)
....+.|+|-.. .++++...-.|+|||++.++.+....- -......|+.+.+-. |..++++
T Consensus 1066 ~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~aLlLt 1128 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDDALLLT 1128 (1387)
T ss_pred CCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccchhheee
Confidence 566788888888 566666667899999999987654110 012346788888865 6678999
Q ss_pred EECCCeEEEEEcc-CC----ceeeeeeEEecc----cCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEee-C
Q 001776 436 AYSKHIVHLYTYH-GG----DELRNHLEIEAH----VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-G 505 (1015)
Q Consensus 436 ~~~dg~v~iwd~~-~~----~~~~~~~~~~~h----~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~ 505 (1015)
|+.||.|+||+-. ++ +.+.....+.++ .+.=.-++|..... +|+++|.-..|+|||.....++..+. +
T Consensus 1129 as~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred eccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEeecccC
Confidence 9999999999643 22 112211122222 11123467776666 57777778899999998888877664 3
Q ss_pred CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc---eeeecCCCCc--eEEEEECCCCCE-EEEEeeCCCCCceE
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS---RVDYDAPGHS--STMMAYSADGAR-LFSCGTNKEGESYL 579 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~--i~~~~~s~~~~~-l~~~~~d~~~~~~i 579 (1015)
....|+++.-+-. .|+.+++|..||.|++||.+.... +..+..|... |..+.+.+.|-. |++++.+|+ |
T Consensus 1207 s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~----I 1281 (1387)
T KOG1517|consen 1207 SSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD----I 1281 (1387)
T ss_pred CCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe----E
Confidence 4556777765433 368999999999999999886544 3445556655 999999887765 888887664 9
Q ss_pred EEEeCCCCeeeE--EeeCCC--CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC-----CCCCCcceEEE
Q 001776 580 VEWNESEGAVKR--TYHGLG--KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-----GGLQASPCIRF 650 (1015)
Q Consensus 580 ~iwd~~~~~~~~--~~~~~~--~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~v~~v~~ 650 (1015)
++||++...... ....|. +...+++..+++...+++|+. +.|+||++.. +.+..+... .....+.|++|
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeee
Confidence 999998742222 222222 224889999999999999998 9999999854 434333221 12346789999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCC
Q 001776 651 NKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 651 s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+|-.-++|+|+.|.+|.||....+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cchhHhhhhccCCceEEEeecCCc
Confidence 999999999999999999987654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=139.24 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=174.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
...+|+|.+|++|+. .+|++.....|.||.....+.-. ...++..|...|++|.|+|.++.|+
T Consensus 9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence 457899999999999 67888888999999987765221 2224788999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE----EEeeCCCCCE
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----YIFEGHESPV 510 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~----~~~~~h~~~v 510 (1015)
+|+.|..-+||....+..-++...+..|+..++++.|+|.++ .|++||.-..|.||-++...-- +.-+.+...|
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence 999999999999966666666667888999999999999999 8999999999999987654322 1223467789
Q ss_pred EEEeecccCCccEEEEEeCCCeEEEEeC-----CCC-------------CceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 511 YSICPHHKENIQFIFSTATDGKIKAWLY-----DNL-------------GSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 511 ~~i~~~~~~~~~~l~s~~~dg~i~vwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
.++.|++.+ -++++|+.|+..+++.. +.. ....++...++++..+.|+|+|..|+-.+.|
T Consensus 150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hd 227 (361)
T KOG1523|consen 150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHD 227 (361)
T ss_pred eeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCC
Confidence 999998755 68999999999999853 111 1112333456789999999999999999875
Q ss_pred CCCCceEEEEeCCCCe-eeEEeeCCCCCCeEEEEEeCC
Q 001776 573 KEGESYLVEWNESEGA-VKRTYHGLGKRSVGVVQFDTT 609 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~i~~v~~~~~ 609 (1015)
. .+.+-|..... .+........ +..++.|-.+
T Consensus 228 s----~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise 260 (361)
T KOG1523|consen 228 S----TVSFVDAAGPSERVQSVATAQL-PLLSVSWISE 260 (361)
T ss_pred C----ceEEeecCCCchhccchhhccC-CceeeEeecC
Confidence 4 48888876654 2333332222 5555555433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-15 Score=137.48 Aligned_cols=217 Identities=13% Similarity=0.154 Sum_probs=152.8
Q ss_pred cEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 778 ~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
.|-+-+++|.+++++++..+|.|.+..+..-.-. . ....|+... ++.++|.+++..++|. ..+
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~---s----------a~~~gk~~i--v~eqahdgpiy~~~f~--d~~ 74 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG---S----------AEPPGKLKI--VPEQAHDGPIYYLAFH--DDF 74 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcc---c----------cCCCCCcce--eeccccCCCeeeeeee--hhh
Confidence 3445678999999999999999999987632100 0 011122111 2223599999999997 568
Q ss_pred EEEEcCCeEEEEeCCCCce------eEEe--C-----CCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEc
Q 001776 858 VMSASGGKISLFNMMTFKT------MTTF--M-----PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1015)
Q Consensus 858 la~~sdg~i~iwd~~~~~~------~~~l--~-----~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~ 924 (1015)
|++++||.|+=|....... +..+ . ..-..|+++-..|..+.++ .++.|+.++-||+++|+...+++
T Consensus 75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~-~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL-FAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE-EecCCeEEEEEEecCCEEEEEEc
Confidence 8888899999997654221 1111 1 1234689999999555555 55589999999999999999999
Q ss_pred CccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEE-EecCCCcc-ccCCceEEEEccCCCEEEEEeCCeEEE
Q 001776 925 GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFL-TIPNGRTA-SALADTRVQFHLDQTHLLAVHETQIAI 1002 (1015)
Q Consensus 925 ~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~-~~~~~~~~-~~~~v~~l~fs~dg~~l~~~~d~~i~v 1002 (1015)
||++-|.++.--.....+++|++||++|+||.+++++....-. ..+....+ ....|- +..-+..+|+.|....+.+
T Consensus 154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig--ala~~edWlvCGgGp~lsl 231 (325)
T KOG0649|consen 154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG--ALAVNEDWLVCGGGPKLSL 231 (325)
T ss_pred CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE--EEeccCceEEecCCCceeE
Confidence 9999999998855556789999999999999999886533211 11111111 112344 4445678999998999999
Q ss_pred EEcCCceEeccC
Q 001776 1003 YEAPKLECLKQV 1014 (1015)
Q Consensus 1003 wd~~~g~~l~~~ 1014 (1015)
|++...++...|
T Consensus 232 whLrsse~t~vf 243 (325)
T KOG0649|consen 232 WHLRSSESTCVF 243 (325)
T ss_pred EeccCCCceEEE
Confidence 999998887765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.8e-14 Score=150.28 Aligned_cols=483 Identities=13% Similarity=0.174 Sum_probs=280.5
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCC----------CceEEEEEeCCCe
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN----------KQLSVVTCGEDRV 488 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~----------~~~~l~s~s~dg~ 488 (1015)
..-.++.|+|.| +||.|+.. .|.+-|..+-+.+. .+..|...|+.+.|.|.. .++.|+++...|.
T Consensus 16 sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 346778899877 56666544 58888988866665 778899999999998732 3457888999999
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCc--cEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECC-CCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENI--QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA-DGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 565 (1015)
|.+||...+..+..+..|..++..++|.+..+. .++++-....++.+|+.++++....+........++.+.| |.+.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 999999999999999999999999998776543 4677777788999999999998888777666777788888 4444
Q ss_pred EEEEeeCCCCCceEEEEeCC-------CCeeeEEeeCCCC----------------CC--------eEEEEEeCCCCEEE
Q 001776 566 LFSCGTNKEGESYLVEWNES-------EGAVKRTYHGLGK----------------RS--------VGVVQFDTTKNRFL 614 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~-------~~~~~~~~~~~~~----------------~~--------i~~v~~~~~~~~l~ 614 (1015)
+...+. .+.+.+-+.- .|+..+.-..|.+ .+ ...++|+|.-+.++
T Consensus 171 ~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 444432 2233333321 1122221111111 00 11246788776666
Q ss_pred EEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC--CEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccc
Q 001776 615 AAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (1015)
Q Consensus 615 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 692 (1015)
.......+.++|++-..++.......+ .+.-+.|-|++ ..|++.-.||.+.+|-........+.-..+
T Consensus 247 fi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~-------- 316 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNAS-------- 316 (1062)
T ss_pred EEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchh--------
Confidence 666677899999999999988877633 44556676755 678889999999999765431111111000
Q ss_pred ccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCC
Q 001776 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD 772 (1015)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 772 (1015)
++.+.. ..+.+....
T Consensus 317 -------------------l~~dl~-------------------------------~Q~~~vr~m--------------- 331 (1062)
T KOG1912|consen 317 -------------------LSMDLG-------------------------------EQVHVVRPM--------------- 331 (1062)
T ss_pred -------------------hccccc-------------------------------cceEEEeec---------------
Confidence 000000 000000000
Q ss_pred CcCCccEEEEEEcCC-CcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEE
Q 001776 773 NLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL 851 (1015)
Q Consensus 773 ~~~~~~i~~l~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~ 851 (1015)
.+..+...+..|. ...++..-.+|...+|.+..+...+++......-..-+|....... -..-.-+..
T Consensus 332 --~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~~L 400 (1062)
T KOG1912|consen 332 --EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLISL 400 (1062)
T ss_pred --hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhccccch
Confidence 0011111111222 2233334444555555554322221111100000000000000000 000000112
Q ss_pred ccCCCEEEEEcCCe--EEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCC
Q 001776 852 SKNDSYVMSASGGK--ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR 929 (1015)
Q Consensus 852 s~dg~~la~~sdg~--i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~ 929 (1015)
|.||.. +.|. +++--+......... ..+... ...- .++|.|...|+|.++|+.++..-+.+..|+..
T Consensus 401 S~dg~h----~sGs~~~~~~p~p~~t~~~~~--p~~n~~-~~~~----pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~ 469 (1062)
T KOG1912|consen 401 SDDGSH----SSGSTCVRMRPMPELTKVEND--PGGNTP-AGTV----PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSL 469 (1062)
T ss_pred hhcCCC----CCCceeeecccCcccceeecC--CCCCcc-ceee----eeEEeecCCceEEEEEecchhhhhhhcccccc
Confidence 222200 0111 111111111111111 111111 1112 27899999999999999999999999999999
Q ss_pred eEEEEEeCCCCEEEE---------EeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eCCe
Q 001776 930 ITGLAFSNTLNVLVS---------SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQ 999 (1015)
Q Consensus 930 v~~l~~spdg~~l~s---------~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~ 999 (1015)
|.++.|....+++-. ++.-+.+.+-|+.+|..+..+..+ +. ...+|..+..|.-|+||++. .|.-
T Consensus 470 VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~---~~--despI~~irvS~~~~yLai~Fr~~p 544 (1062)
T KOG1912|consen 470 VKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ---KP--DESPIRAIRVSSSGRYLAILFRREP 544 (1062)
T ss_pred eeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCC---CC--CcCcceeeeecccCceEEEEecccc
Confidence 999999755443321 222345778899998754332222 22 23679999999999999997 8999
Q ss_pred EEEEEcCCceEec
Q 001776 1000 IAIYEAPKLECLK 1012 (1015)
Q Consensus 1000 i~vwd~~~g~~l~ 1012 (1015)
+.+||+++..+++
T Consensus 545 lEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 545 LEIWDLKTLRMLR 557 (1062)
T ss_pred hHHHhhccchHHH
Confidence 9999998876654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-13 Score=145.61 Aligned_cols=331 Identities=14% Similarity=0.143 Sum_probs=206.3
Q ss_pred eEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEE
Q 001776 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1015)
Q Consensus 478 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 557 (1015)
+++++-..++.|.+.|..+.+.+.++......-..+.+ +++|+++++++.||.|.++|+.+.+....... +....++
T Consensus 7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI 83 (369)
T ss_dssp EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence 35677778999999999999999999865443333555 45568999999999999999999887777655 4467889
Q ss_pred EECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC------CCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCC
Q 001776 558 AYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG------KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNV 630 (1015)
Q Consensus 558 ~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~------~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~ 630 (1015)
++++||++++++... .+.+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+-|....
T Consensus 84 ~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 84 AVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred EEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 999999999988753 3469999999999988876432 22466777788888665555 5688888898776
Q ss_pred ceeEEEecCCCCCCcceEEEcCCCCEEEEE-eCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccc
Q 001776 631 NLLASIDADGGLQASPCIRFNKEGILLAVS-TNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN 709 (1015)
Q Consensus 631 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1015)
+.+....... ........|+|++++++.+ ..++.|-++|..++ .....+.....
T Consensus 161 ~~~~~~~i~~-g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-k~v~~i~~g~~----------------------- 215 (369)
T PF02239_consen 161 KNLKVTTIKV-GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-KLVALIDTGKK----------------------- 215 (369)
T ss_dssp SCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT-EEEEEEE-SSS-----------------------
T ss_pred cccceeeecc-cccccccccCcccceeeecccccceeEEEeeccc-eEEEEeecccc-----------------------
Confidence 5443322211 2345689999999987665 46678999998876 33322211000
Q ss_pred cccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCc
Q 001776 710 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL 789 (1015)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~ 789 (1015)
.|..+...+ .+|...
T Consensus 216 ----------------------------------------------------------------p~~~~~~~~-php~~g 230 (369)
T PF02239_consen 216 ----------------------------------------------------------------PHPGPGANF-PHPGFG 230 (369)
T ss_dssp ----------------------------------------------------------------BEETTEEEE-EETTTE
T ss_pred ----------------------------------------------------------------ccccccccc-cCCCcc
Confidence 011111111 111110
Q ss_pred EEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEE-EEEcCCeEEE
Q 001776 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV-MSASGGKISL 868 (1015)
Q Consensus 790 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~l-a~~sdg~i~i 868 (1015)
.+|. .+..+... ...+.+.+.+
T Consensus 231 -----------~vw~----------------------------------------------~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 231 -----------PVWA----------------------------------------------TSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp -----------EEEE----------------------------------------------EEBSSSSEEEEEE--TTT-
T ss_pred -----------eEEe----------------------------------------------eccccceecccccCCcccc
Confidence 0111 11112222 2222445668
Q ss_pred EeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEE----EcCCeEEEEEcccceEEEEEcCcc-CCeEEEEEeCCCCEEE
Q 001776 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG----MEDSSIQIYNVRVDEVKTKLKGHQ-KRITGLAFSNTLNVLV 943 (1015)
Q Consensus 869 wd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g----~~dg~v~vwd~~~~~~~~~l~~h~-~~v~~l~~spdg~~l~ 943 (1015)
||..+.+.++++...... ..+..+| +++++.+. ...+.|.++|.++.+.+.++.... ..+..+.|++||+.+.
T Consensus 254 ~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~ 331 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVW 331 (369)
T ss_dssp STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEE
T ss_pred chhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEE
Confidence 899999999999876666 8888899 89999887 455799999999998888875332 3588999999999776
Q ss_pred EEeCCC--cEEEEEccCccccc
Q 001776 944 SSGADS--QLCVWSTDGWEKQA 963 (1015)
Q Consensus 944 s~s~dg--~v~vWd~~~~~~~~ 963 (1015)
.+..++ .|.++|..+.+...
T Consensus 332 vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 332 VSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEE--TTEEEEEETTTTEEEE
T ss_pred EEEecCCCEEEEEECCCcEEEE
Confidence 655443 69999999987553
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=139.36 Aligned_cols=231 Identities=17% Similarity=0.222 Sum_probs=176.1
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~ 496 (1015)
-..+|+|.+|++|+..+|++.....|.||.....+......++..|...|+.++|+|..+ .|++|+.|...++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 347999999999999999999999999999988876666778999999999999999998 699999999999999843
Q ss_pred -C--ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce----eeecCCCCceEEEEECCCCCEEEEE
Q 001776 497 -G--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR----VDYDAPGHSSTMMAYSADGARLFSC 569 (1015)
Q Consensus 497 -~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~ 569 (1015)
+ ++...+..++...+++.|+|.+ +.+++|+.-..|.+|-++....= ..-......|.++.|+|++-.++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 3 3444566688999999998776 68999999999999987754332 1223345678999999999999998
Q ss_pred eeCCCCCceEEEEeC-----CC-------------CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc
Q 001776 570 GTNKEGESYLVEWNE-----SE-------------GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
+.|+ ..+++.. +. |.+...+. ...+.+..+.|+|+|+.|+-.+.|+.+.+-|.....
T Consensus 165 s~D~----k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 STDG----KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCc----ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 8755 3666542 11 22233333 233478999999999999999999999999987664
Q ss_pred -eeEEEecCCCCCCcceEEEcCCCCEEE
Q 001776 632 -LLASIDADGGLQASPCIRFNKEGILLA 658 (1015)
Q Consensus 632 -~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (1015)
.+...... .-+..++.|-.+...++
T Consensus 240 ~~v~~~~~~--~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 240 ERVQSVATA--QLPLLSVSWISENSVVA 265 (361)
T ss_pred hhccchhhc--cCCceeeEeecCCceee
Confidence 33333322 23556666665544443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-14 Score=143.94 Aligned_cols=201 Identities=14% Similarity=0.242 Sum_probs=143.5
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 602 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
..++|+++|..+++++.||++|+|+..+...+.....| ...|.++.|+|||++|++.+.| ..+||+..++ ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh--cCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhc
Confidence 56899999999999999999999998777766665544 5689999999999999999999 9999999988 222222
Q ss_pred cCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccC
Q 001776 682 ESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITE 761 (1015)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~ 761 (1015)
....
T Consensus 224 t~~~---------------------------------------------------------------------------- 227 (398)
T KOG0771|consen 224 TPFS---------------------------------------------------------------------------- 227 (398)
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 1100
Q ss_pred CcceeEeccCCCcCCccEEEEEEcCCC-----cEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCcccccc
Q 001776 762 PSQCRSLRLPDNLTAMRVSRLIYTNSG-----LAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTND 836 (1015)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~s~dg-----~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 836 (1015)
....+..+.|+.|+ +..+.....+.+..|++ .+|+-..--.....
T Consensus 228 -------------k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~-----------------~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 228 -------------KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI-----------------SLWSGSNFLRLRKK 277 (398)
T ss_pred -------------cchhhhhceecccCCCceEEEEEecCCCCceeEEEe-----------------eeeccccccchhhh
Confidence 11122233444444 11222222355555553 23433211011111
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEe-CCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEc
Q 001776 837 ISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTF-MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV 914 (1015)
Q Consensus 837 l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~ 914 (1015)
+. ....|+++++|+||+++|.|+ ||.|.|++..+.+++.-. +.|...|+.++|+| |.+++++-+.|..+.|..+
T Consensus 278 ~~---~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 278 IK---RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hh---ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 11 355799999999999999999 999999999988877665 46889999999999 9999999888888888776
Q ss_pred cc
Q 001776 915 RV 916 (1015)
Q Consensus 915 ~~ 916 (1015)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 53
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=135.68 Aligned_cols=289 Identities=15% Similarity=0.174 Sum_probs=190.3
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTLF 433 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l 433 (1015)
.+..+..++|++.-. -+|++..|-.|++||-.+..... +-......|+|++|-| .++.|
T Consensus 97 s~~dlr~~aWhqH~~-~fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasel 156 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHII-AFAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASEL 156 (445)
T ss_pred hhcceeeEeechhhh-hhhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCccee
Confidence 345678899999654 57888999999999976632211 1223457899999999 45688
Q ss_pred EEEECCCeEEEEEccCCceee-----------eeeEEecccCceeEEEEecCCCceEEEEEeC-CCeEEEEEcCCCceEE
Q 001776 434 GVAYSKHIVHLYTYHGGDELR-----------NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~-----------~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~-dg~v~vwd~~~~~~~~ 501 (1015)
++|+..| |.||......... ......+| .+|++|.|.+||. .+++++. |..|.|||..++..+.
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence 8888887 9999865321110 11122345 6899999999999 6888774 6789999999998776
Q ss_pred EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEE
Q 001776 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 502 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
.....-+.+.-+.|+|++ .+++++..|+..++|+....-.........+.|...+|+|+|++|+.+... +..++-
T Consensus 233 L~~~glgg~slLkwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lys 307 (445)
T KOG2139|consen 233 LIPKGLGGFSLLKWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYS 307 (445)
T ss_pred ccccCCCceeeEEEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEE
Confidence 554456678889997665 799999999999999655433333333334489999999999998776532 222222
Q ss_pred E--eCCCCee-----------eEEe------eC--CCCCCeEEEEEeCCCCEEEEEeCCC--------cEEEEeCCCCce
Q 001776 582 W--NESEGAV-----------KRTY------HG--LGKRSVGVVQFDTTKNRFLAAGDEF--------MIKFWDMDNVNL 632 (1015)
Q Consensus 582 w--d~~~~~~-----------~~~~------~~--~~~~~i~~v~~~~~~~~l~~~~~dg--------~i~vwd~~~~~~ 632 (1015)
. +-+.+.. +..+ .+ .-.+...+++|.|.|.++++.-..+ .|.+||.+..-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 1 1111110 0000 11 0123677899999999999865333 367788766544
Q ss_pred eEEEe-cCCCCCCcceEEEcC---CCCEEEEEeCCCcEEEEEcc
Q 001776 633 LASID-ADGGLQASPCIRFNK---EGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 633 ~~~~~-~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iw~~~ 672 (1015)
+.... +......-..+.|+| +|.+|..+-..|.+.-|++.
T Consensus 388 vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 388 VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 43331 111112245677776 67788888788888777653
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-16 Score=169.07 Aligned_cols=341 Identities=17% Similarity=0.201 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 001776 170 RLRTLINQSLNWQHQLCKNPRANPDIKTLFVDHTCGQPNGARAPSPVTNPLMGAVPKAGAFPPLSAHGPFQPTPAALPTS 249 (1015)
Q Consensus 170 rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1015)
.|.+|+.|+++.|+.+|+.|.++++.+|||..|.|+.|+..++-. .| +.+.+.
T Consensus 1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEpk~~~~ap-~N--~t~Rl~------------------------ 1066 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEPKRLLEAP-LN--MTGRLG------------------------ 1066 (1516)
T ss_pred cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCChHHHhhcc-hh--hhhccc------------------------
Confidence 599999999999999999999999999999999999955333211 00 000000
Q ss_pred ccccccCCCCCCCCCCCCCCccccCCCchhhhccCCCCCCCCCCccccCCCChHhHhhcCCCCCCCccccccccceeeee
Q 001776 250 LAGWMANPSPVPHPSPSAGPIALTAANNAAAILKRPRTPPTNNSAMDYQTADSEHVLKRSRPFGISDEVNNLSVNILPVA 329 (1015)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~~ 329 (1015)
. +.|. +..++|.-+..+...+|++.|.+
T Consensus 1067 ---------~--------------------rel~------~~y~gV~g~~~dr~~IFSRFr~w----------------- 1094 (1516)
T KOG1832|consen 1067 ---------T--------------------RELQ------SFYSGVHGNRRDRQFIFSRFRSW----------------- 1094 (1516)
T ss_pred ---------c--------------------hhhc------CcccccccCcccchhhHhhcccc-----------------
Confidence 0 1111 11245666667777777777633
Q ss_pred eCCCCCCCccccCCCCCceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCcc
Q 001776 330 YTPQSLGQSSYSTDDLPKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMP 408 (1015)
Q Consensus 330 ~s~~g~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 408 (1015)
+++. |+..-+|++||-+.+ .|+.|+..|.|+++++.+|.....
T Consensus 1095 ---------------------~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------- 1138 (1516)
T KOG1832|consen 1095 ---------------------RSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------- 1138 (1516)
T ss_pred ---------------------hhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc--------------
Confidence 3344 667889999999988 679999999999999999987654
Q ss_pred ccccccccCCCCEEEEEEccCCCEEEEEECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC
Q 001776 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486 (1015)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~las~~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d 486 (1015)
...|.++|+.+.-|.||..+++.+.-. ...+|+..+- .....++. .-.++.|+..... -+.|..-
T Consensus 1139 -----~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~ 1205 (1516)
T KOG1832|consen 1139 -----VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEA 1205 (1516)
T ss_pred -----ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccc
Confidence 678999999999999999888775543 3678998752 22111232 3567889876553 3444444
Q ss_pred CeEEEEEcCCCceEEEe-eC---CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCC
Q 001776 487 RVIKVWDAVTGTKQYIF-EG---HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (1015)
Q Consensus 487 g~v~vwd~~~~~~~~~~-~~---h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~ 562 (1015)
..+.+||++++..+.++ .+ .+..-+...|+|.. .+++ .||. +||.+..+.+..+..-... -.-.|+|.
T Consensus 1206 d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D--~LIl---ndGv--LWDvR~~~aIh~FD~ft~~-~~G~FHP~ 1277 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD--TLIL---NDGV--LWDVRIPEAIHRFDQFTDY-GGGGFHPS 1277 (1516)
T ss_pred cceEEEecccCcHHHHhcCcchhhhhhccccccCCCc--ceEe---eCce--eeeeccHHHHhhhhhheec-ccccccCC
Confidence 57889999999877663 22 12222445566554 4554 3444 7999987666555433311 12359999
Q ss_pred CCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe--CC---------------CcEEEE
Q 001776 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DE---------------FMIKFW 625 (1015)
Q Consensus 563 ~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~d---------------g~i~vw 625 (1015)
|..++..+ -|||+++.+.++....... +.+.|+..|..++..- .| ...+-+
T Consensus 1278 g~eVIINS---------EIwD~RTF~lLh~VP~Ldq---c~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf 1345 (1516)
T KOG1832|consen 1278 GNEVIINS---------EIWDMRTFKLLHSVPSLDQ---CAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTF 1345 (1516)
T ss_pred CceEEeec---------hhhhhHHHHHHhcCccccc---eEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccc
Confidence 99988764 4899999998887766544 5678888887666532 00 113344
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
|..+...+.++... ..+..++-+|...+++...
T Consensus 1346 ~a~dYs~iaTi~v~---R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1346 DAIDYSDIATIPVD---RCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred cccccccceeeecc---cchhhhhcCCccceEEEEe
Confidence 44455555555442 3455566666656665543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-14 Score=135.54 Aligned_cols=247 Identities=15% Similarity=0.232 Sum_probs=176.5
Q ss_pred EeccCCCeeEEEeccCCC----eEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 352 TLNQGSAVKSMDFHPVQQ----ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~----~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
++.|.-+++.+.|.|+.. .+|||. +..+++|.+...+..... ...+....-..+.+++++..|+
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence 367999999999999862 467764 346999998753221110 0001111134567899999999
Q ss_pred c-CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE---Ee
Q 001776 428 P-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY---IF 503 (1015)
Q Consensus 428 p-dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~---~~ 503 (1015)
. |-++|.+++-|-+..|||+++|........+-+|...|..++|...+.+ .+++.|.||+|+++|++.-+-.. +-
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence 8 8889999999999999999998442233367889999999999997777 89999999999999998754332 22
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCC-CeEEEEeCCCCCc-eeeecCCCCceEEEEECCCC-CEEEEEeeCCCCCceEE
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATD-GKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~~~~~i~ 580 (1015)
.....+...++|+.... +++++-..| ..|.+.|++.... ...+..|...|++++|.|.. ..|.+++. +....
T Consensus 239 p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qal 313 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQAL 313 (364)
T ss_pred CCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEE
Confidence 22246677888876443 677776655 4588999987654 56788899999999999965 56666664 44799
Q ss_pred EEeCCCCee------eEEeeCCCCCCeEEEEEeCC-CCEEEEEeC
Q 001776 581 EWNESEGAV------KRTYHGLGKRSVGVVQFDTT-KNRFLAAGD 618 (1015)
Q Consensus 581 iwd~~~~~~------~~~~~~~~~~~i~~v~~~~~-~~~l~~~~~ 618 (1015)
+||+.+.-. +..+. .+..|..+.|++. ..+++.+..
T Consensus 314 iWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 314 IWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred EEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec
Confidence 999875322 22233 2237888999864 456666553
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-14 Score=157.37 Aligned_cols=235 Identities=11% Similarity=0.076 Sum_probs=161.5
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+..|++||..... .+.+..+.. .+...+|+|||+.++.++.+ ..|++||+.+++........+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQ-PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCC-ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC
Confidence 3569999986554 445555544 78889999999999987743 469999998876543322222 234789999
Q ss_pred CCCEEEEEe-CCCcEEEEE--ccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccC
Q 001776 653 EGILLAVST-NDNGIKILA--NADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729 (1015)
Q Consensus 653 ~~~~l~~~~-~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1015)
||+.|+.++ .+|.+.||. +.++ . ...+.
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~-~-~~~lt----------------------------------------------- 288 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGG-T-PSQLT----------------------------------------------- 288 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCC-C-eEeec-----------------------------------------------
Confidence 999888765 677766664 3333 1 11110
Q ss_pred CCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEec-cCcEEEEeecccc
Q 001776 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRN 808 (1015)
Q Consensus 730 ~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~-~dg~i~vw~~~~~ 808 (1015)
.+...+....|+|||+.|+.++ .+|...+|+++.
T Consensus 289 --------------------------------------------~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~- 323 (429)
T PRK01742 289 --------------------------------------------SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA- 323 (429)
T ss_pred --------------------------------------------cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC-
Confidence 0223355788999999877665 467888887542
Q ss_pred CCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCee
Q 001776 809 ERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT 888 (1015)
Q Consensus 809 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~ 888 (1015)
..+.... +. +.. ...+|||||++|+..+...+.+||+.+++........ ...
T Consensus 324 -------------------~~~~~~~--l~---~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~ 375 (429)
T PRK01742 324 -------------------SGGGASL--VG---GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDE 375 (429)
T ss_pred -------------------CCCCeEE--ec---CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCC
Confidence 1111110 11 222 3578999999999888555777999888765433222 345
Q ss_pred EEEEcCCCCcEEEEEEcCCeEEEEEcc--cceEEEEEcCccCCeEEEEEeCC
Q 001776 889 FLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKTKLKGHQKRITGLAFSNT 938 (1015)
Q Consensus 889 ~l~~sp~d~~~la~g~~dg~v~vwd~~--~~~~~~~l~~h~~~v~~l~~spd 938 (1015)
.+.|+| ||++|+.++.++.+.+|.+. +|+.+..+.+|.+.+..++|||-
T Consensus 376 ~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 678999 99999999999988888764 57888899989998999999974
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=126.96 Aligned_cols=238 Identities=14% Similarity=0.178 Sum_probs=168.0
Q ss_pred CEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccC--ceeEEEEecCCCceEEEEEeCC------CeEEE
Q 001776 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG--SVNDLAFSYPNKQLSVVTCGED------RVIKV 491 (1015)
Q Consensus 420 ~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~--~V~~~~~s~~~~~~~l~s~s~d------g~v~v 491 (1015)
...+++|+.|...+++|..+| .+||+++--+... .-..+.+ .+..|-|- .+. +.+.||.+ +.|.|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR--~N~-laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFR--SNY-LALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhh--hce-EEEecCCCCCCCCCceEEE
Confidence 445599999999999999988 8999987522111 1111222 23333332 332 23334333 48999
Q ss_pred EEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC-CCCceeeecCCCCceEEEEECC--CCCEEEE
Q 001776 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD-NLGSRVDYDAPGHSSTMMAYSA--DGARLFS 568 (1015)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~ 568 (1015)
||=...+++.++. ...+|.++.+..+ .|++. ..+.|++|.+. +.+....+.....+---++..| +...|+.
T Consensus 80 WDD~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 80 WDDLKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EecccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 9966778888887 6788999998543 34443 45889999987 3344444433222211233333 3334444
Q ss_pred EeeCCCCCceEEEEeCCCCee--eEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc-EEEEeCCCCceeEEEecCCCCCCc
Q 001776 569 CGTNKEGESYLVEWNESEGAV--KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-IKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 569 ~~~d~~~~~~i~iwd~~~~~~--~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
-+ ...+.|.+-|+...+. ...+..|.. .|.+++.+-+|..++++|..|+ |+|||..+|+.++.+........|
T Consensus 154 Pg---~k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 154 PG---FKTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred CC---CccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 33 3356799999876655 467777776 9999999999999999998887 799999999999999876666789
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.+++|||+..+||++++.|++.||.+...
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=129.34 Aligned_cols=279 Identities=13% Similarity=0.161 Sum_probs=196.6
Q ss_pred CCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEE
Q 001776 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1015)
Q Consensus 357 ~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 436 (1015)
..+..+.|..+.. ++..|+.|| .++|+...-..... .......|..+-||. .++|..
T Consensus 6 ~ti~~~~~Nqd~~-~lsvGs~~G-yk~~~~~~~~k~~~-------------------~~~~~~~IvEmLFSS--SLvaiV 62 (391)
T KOG2110|consen 6 PTINFIGFNQDST-LLSVGSKDG-YKIFSCSPFEKCFS-------------------KDTEGVSIVEMLFSS--SLVAIV 62 (391)
T ss_pred cceeeeeecccee-EEEccCCCc-eeEEecCchHHhhc-------------------ccCCCeEEEEeeccc--ceeEEE
Confidence 3566677888887 889999998 57777665433111 112234556666664 455555
Q ss_pred ECC--CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCC---CCCEE
Q 001776 437 YSK--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH---ESPVY 511 (1015)
Q Consensus 437 ~~d--g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h---~~~v~ 511 (1015)
+.+ ..+++++.+.+..+... . ....|.++.++.+ .|+.+-.+. |+|||+++.+.++++..- ...+.
T Consensus 63 ~~~qpr~Lkv~~~Kk~~~ICe~---~-fpt~IL~VrmNr~----RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~ 133 (391)
T KOG2110|consen 63 SIKQPRKLKVVHFKKKTTICEI---F-FPTSILAVRMNRK----RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLC 133 (391)
T ss_pred ecCCCceEEEEEcccCceEEEE---e-cCCceEEEEEccc----eEEEEEccc-EEEEecccceeehhhhccCCCccceE
Confidence 544 35899998877665532 1 4567999998743 456665554 999999999999887643 33454
Q ss_pred EEeecccCCccEEEEE--eCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee
Q 001776 512 SICPHHKENIQFIFST--ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV 589 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~ 589 (1015)
+ ++++..+.+++.- ...|.|.+||..+......+..|.+.+.+++|+++|.+|++++.-| ..|+++.+.+|+.
T Consensus 134 A--lS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG---TVIRVf~v~~G~k 208 (391)
T KOG2110|consen 134 A--LSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG---TVIRVFSVPEGQK 208 (391)
T ss_pred e--eccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc---eEEEEEEcCCccE
Confidence 4 4455555677753 3468899999999999999999999999999999999999998543 4799999999999
Q ss_pred eEEeeCCCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce------------------------------------
Q 001776 590 KRTYHGLGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL------------------------------------ 632 (1015)
Q Consensus 590 ~~~~~~~~~-~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------------ 632 (1015)
+..|+.... ..|.+++|+|++.+|.+.|..++|++|.+.....
T Consensus 209 l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R 288 (391)
T KOG2110|consen 209 LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSR 288 (391)
T ss_pred eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhcc
Confidence 998875432 3588999999999999999999999998753210
Q ss_pred -eEEEecCCCCCCcceEEEc--CCCCEEEEEeCCCcEEEEEccC
Q 001776 633 -LASIDADGGLQASPCIRFN--KEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 633 -~~~~~~~~~~~~v~~v~~s--~~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
........ ...-..+.+. +....+..++.||.++.|.+..
T Consensus 289 ~FAt~~l~~-s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 289 KFATAKLPE-SGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred ceeEEEccC-CCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00001110 0111233444 3667888899999999998754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=154.59 Aligned_cols=268 Identities=17% Similarity=0.191 Sum_probs=180.7
Q ss_pred CceeEEEec-cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEE
Q 001776 346 PKTVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRV 424 (1015)
Q Consensus 346 ~~~~~~~~~-h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l 424 (1015)
.+.++..+. |...|..++.++....++++|+.||+|++||...-..-. ..++ ..-++.-....+.++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKV 1104 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEE
Confidence 356666666 999999999998875599999999999999985422110 0000 000122256789999
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCC--ceeee--eeEEecc-cC-ceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 425 MWSPDGTLFGVAYSKHIVHLYTYHGG--DELRN--HLEIEAH-VG-SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 425 ~~spdg~~las~~~dg~v~iwd~~~~--~~~~~--~~~~~~h-~~-~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
.+.+.++.+|+++.||.|++.+++-. ..... ......+ .+ .|..-+|....+...++.+..-+.|..||++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 99999999999999999999998752 11110 0011112 22 3344455544433368888889999999998776
Q ss_pred eEEEee--CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC-CCceEEEEECC---CCCEEEEEeeC
Q 001776 499 KQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSA---DGARLFSCGTN 572 (1015)
Q Consensus 499 ~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~---~~~~l~~~~~d 572 (1015)
...+++ ...+.|++++.++.. .+++.|+..|.+.+||++-...+.....+ ..+++.+..+| .....++++..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~ 1262 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS 1262 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc
Confidence 665443 345779999987655 69999999999999999976666554432 24677776655 34566666652
Q ss_pred CCCCceEEEEeCCCCeeeEEeeCCCCC----------------C--eEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKR----------------S--VGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~----------------~--i~~v~~~~~~~~l~~~~~dg~i~vwd~~~ 629 (1015)
+.+.+.+|++.+|....++....+. . ....++...+..+++|+.|..|+.||...
T Consensus 1263 --~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1263 --SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred --CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 3556999999998766665443110 0 11123334456889999999999999743
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.3e-13 Score=140.50 Aligned_cols=235 Identities=14% Similarity=0.146 Sum_probs=160.9
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCce------------eeeeeEEecccCceeEEEEecCCCceEEEEEe
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDE------------LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~------------~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s 484 (1015)
......|++|+....++|+|+.||.++|..+.+... +..-.++.||++.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 446788999999999999999999999998765321 111235789999999999998887 789999
Q ss_pred CCCeEEEEEcCCCceEEEe--eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCC
Q 001776 485 EDRVIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562 (1015)
Q Consensus 485 ~dg~v~vwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~ 562 (1015)
.+|.|.+|-+-.|.....+ ....+-|.+++|+. +|..+.....||.|.+=.++. ..+.-....+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVDG-NRIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeecc-ceecchhcchheccceeeccc
Confidence 9999999998877654322 22456678888854 457888888888887665542 222222223334557889999
Q ss_pred CCEEEEEeeCCCCCceEEEEeCCCCe-------eeEEeeCC---CCCCeEEEEE--------eCCCCEEEEEeCCCcEEE
Q 001776 563 GARLFSCGTNKEGESYLVEWNESEGA-------VKRTYHGL---GKRSVGVVQF--------DTTKNRFLAAGDEFMIKF 624 (1015)
Q Consensus 563 ~~~l~~~~~d~~~~~~i~iwd~~~~~-------~~~~~~~~---~~~~i~~v~~--------~~~~~~l~~~~~dg~i~v 624 (1015)
.+.++.+-.++ .+.++|.+..- +.....+. ....+..+.| -|+...++++-..|.+.+
T Consensus 168 ~~~~Lf~~ang----e~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKANG----ETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhcCC----cEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 98887765443 48888865321 10111110 0012334444 257789999999999988
Q ss_pred EeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 625 WDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 625 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
-.-.+......+.. .-.+..+.|+++|..||.++.+
T Consensus 244 MR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCc
Confidence 76554433333332 2467789999999999998865
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=147.27 Aligned_cols=262 Identities=12% Similarity=0.146 Sum_probs=194.3
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
|.+|.+.|..|.|+..|..|++|+.|..|.+||...+..... -..+|...|....|-|......+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 788999999999999999999999999999999998765442 235899999888898865444799999999999876
Q ss_pred cC-CCce--EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC---CCC---ceEEEEECCCCC
Q 001776 494 AV-TGTK--QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA---PGH---SSTMMAYSADGA 564 (1015)
Q Consensus 494 ~~-~~~~--~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~---~i~~~~~s~~~~ 564 (1015)
+. ++.+ ...+..|.++|.-++..|... ..+.+++.|+.+.-.|++.......+.. +.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 64 3333 345667999999999877655 6799999999999999987655433222 222 467888899776
Q ss_pred -EEEEEeeCCCCCceEEEEeCCCCee------eEEeeC-----CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC--C
Q 001776 565 -RLFSCGTNKEGESYLVEWNESEGAV------KRTYHG-----LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN--V 630 (1015)
Q Consensus 565 -~l~~~~~d~~~~~~i~iwd~~~~~~------~~~~~~-----~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~--~ 630 (1015)
.+++++. +.++++||.+.-.. +..+.. ...-.|++++|+.++.-+++.-.|-.|+++...- |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5666655 44789999764321 222222 2223689999998887777777788899996432 2
Q ss_pred ----------ceeEE-EecCCCCCCcceEEE-cCCCCEEEEEeCCCcEEEEEccCCceeeeeecC
Q 001776 631 ----------NLLAS-IDADGGLQASPCIRF-NKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1015)
Q Consensus 631 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1015)
..+.. +++|.....|.++-| -|...++++|++-|.|.||+-.++ ++++.+++
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg 434 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG 434 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc
Confidence 12222 677776777888876 568899999999999999999888 55554443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=144.83 Aligned_cols=197 Identities=15% Similarity=0.091 Sum_probs=150.0
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE
Q 001776 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 422 ~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~ 501 (1015)
.+++|+.||..|++|+.||++|||+..+...+. ....|.+.|.++.|+|||+ +|++-+.| ..+||++++|..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l---~e~~~~~eV~DL~FS~dgk--~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL---EEIAHHAEVKDLDFSPDGK--FLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh---hhHhhcCccccceeCCCCc--EEEEecCC-ceEEEEeccCchhh
Confidence 889999999999999999999999987765444 5677999999999999999 89999999 99999999997776
Q ss_pred EeeC--CCCCEEEEeecccCCcc--EE-EEEeCCCeEEEEeCCCCCc-----eeeecCCCCceEEEEECCCCCEEEEEee
Q 001776 502 IFEG--HESPVYSICPHHKENIQ--FI-FSTATDGKIKAWLYDNLGS-----RVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 502 ~~~~--h~~~v~~i~~~~~~~~~--~l-~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
.... -......+.|..++.+. ++ +.....+.|+.|++..... ..+.......|++++.+++|++++.++.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 5542 22334555665444222 22 2233445566665543222 1122223348999999999999999988
Q ss_pred CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
+++ |.+++..+-+.++..+..+...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 302 dGs----Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 DGS----VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCc----EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 664 99999998888887776666699999999999999998888887776553
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=141.80 Aligned_cols=289 Identities=13% Similarity=0.146 Sum_probs=213.3
Q ss_pred eeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc
Q 001776 348 TVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 348 ~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 427 (1015)
++++.|.+...-+.|..+|||++++|+|.+--.|++||+..-.+-.... -....|.-.-.|
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLs 103 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILS 103 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEec
Confidence 5667788999999999999999999999999999999998755433211 122456666667
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~ 507 (1015)
.|-..++.-..|.+|.+..-. |.... +. -...-..++++.-... |+.++....|+-.+++.|+.+..|....
T Consensus 104 DD~SK~v~L~~DR~IefHak~-G~hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~ 175 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKY-GRHYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS 175 (703)
T ss_pred cchhhheEeecCceeeehhhc-Ceeee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence 777777777788877765432 21111 11 1112234555544442 5555566689999999999999998888
Q ss_pred CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC-----------CceEEEEECCCCCEEEEEeeCCCCC
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG-----------HSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
+.++++..++.. .+|++|+.+|.|..||.+.......+.... ..|+++.|+.+|-.+++|..+|
T Consensus 176 ~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G--- 250 (703)
T KOG2321|consen 176 GELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG--- 250 (703)
T ss_pred ccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC---
Confidence 999999887655 689999999999999998766544433211 1589999999999999987644
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT--KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
.+.+||+++.+++..-.....-+|..+.|.+. ++.+++. ....++|||-.+|+....+.. ...++.+++-|++
T Consensus 251 -~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~s 325 (703)
T KOG2321|consen 251 -SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGS 325 (703)
T ss_pred -cEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc---cCCcCceeeecCC
Confidence 69999999988876655555557888888765 3445444 456899999999999988865 3458999999999
Q ss_pred CEEEEEeCCCcEEEEEccC
Q 001776 655 ILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~ 673 (1015)
.+++++-.++.+..|-+..
T Consensus 326 Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 326 GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEEecCCCcceeEEccc
Confidence 9999999888887776544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-10 Score=115.45 Aligned_cols=394 Identities=13% Similarity=0.100 Sum_probs=222.3
Q ss_pred ceeEEEeccCCCeeEEEeccCCCeEEEE----E--ecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCC
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVV----G--TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420 (1015)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~lla~----g--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 420 (1015)
++..+...|-+-|+...|+|+|+.++.+ | ...+.+.+.+.++|+..+.. +.| ..
T Consensus 69 g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiT------------------yfG--r~ 128 (668)
T COG4946 69 GKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRIT------------------YFG--RR 128 (668)
T ss_pred CCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEE------------------Eec--cc
Confidence 4555666678889999999999976653 2 23456888888888765531 112 33
Q ss_pred EE-EEEEccCCCEEEEEECCCeE----EEEEccCCce-eeeeeEEecccCceeEEEEecCCCceEEEEE-----------
Q 001776 421 VN-RVMWSPDGTLFGVAYSKHIV----HLYTYHGGDE-LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC----------- 483 (1015)
Q Consensus 421 V~-~l~~spdg~~las~~~dg~v----~iwd~~~~~~-~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~----------- 483 (1015)
-+ -.-|+|||+.|++...---. .+|.+..... .. .-.-++.+.+.+- ||. ++.|
T Consensus 129 fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg~---ivigRntydLP~WK~ 199 (668)
T COG4946 129 FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DGI---IVIGRNTYDLPHWKG 199 (668)
T ss_pred cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CCE---EEEccCcccCccccc
Confidence 33 34599999999887554322 2333332111 11 1122344455443 342 2322
Q ss_pred ---eCCCeEEEEEcCC-CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEE
Q 001776 484 ---GEDRVIKVWDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559 (1015)
Q Consensus 484 ---s~dg~v~vwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 559 (1015)
+.-| ++|--.. |+....+-.-.+.|.+-.+- .+ +..+....||.=.+|..+-.+.-......-....+-..
T Consensus 200 YkGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV--~~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~ 274 (668)
T COG4946 200 YKGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIV--GE-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNA 274 (668)
T ss_pred ccCCccc--eEEEEecCCcceeeeeecCCCcCCceEE--cc-eEEEEecccCccceEEeccCCchhhhcCCchhcccccc
Confidence 2222 3453332 22222222222223222111 11 23333344444444433322211111111112233345
Q ss_pred CCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeC---C---CCCC-eEEE----EEeC-CCCEEEEEeCCCcEEEEeC
Q 001776 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---L---GKRS-VGVV----QFDT-TKNRFLAAGDEFMIKFWDM 627 (1015)
Q Consensus 560 s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~-i~~v----~~~~-~~~~l~~~~~dg~i~vwd~ 627 (1015)
+.||++++.... + -|++||..+......--+ . .... +.-. .|++ +|.+++..|. |...+.+.
T Consensus 275 nsDGkrIvFq~~-G----dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 275 NSDGKRIVFQNA-G----DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred CCCCcEEEEecC-C----cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 779999887542 2 399999987655432222 0 0000 1001 1222 5677777774 67777776
Q ss_pred CCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC-cEEEEEccCCceeeeeecCCccccccccccceeccccccccc
Q 001776 628 DNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN-GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706 (1015)
Q Consensus 628 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1015)
..+-.++.- +...|.-..+..+++-++.|..|| .+-|+|..+++ . +.+.
T Consensus 349 ~~~~~iqv~----~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~-kr~e------------------------ 398 (668)
T COG4946 349 WDGYSIQVG----KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-V-KRIE------------------------ 398 (668)
T ss_pred CCCeeEEcC----CCCceEEEEEccCCcceEEeccCCceEEEEecCCce-E-EEee------------------------
Confidence 555444332 234567777777778888899888 89999988772 1 1111
Q ss_pred ccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcC
Q 001776 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTN 786 (1015)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 786 (1015)
..-+.|.++..++
T Consensus 399 -------------------------------------------------------------------~~lg~I~av~vs~ 411 (668)
T COG4946 399 -------------------------------------------------------------------KDLGNIEAVKVSP 411 (668)
T ss_pred -------------------------------------------------------------------CCccceEEEEEcC
Confidence 1335688999999
Q ss_pred CCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-C--
Q 001776 787 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G-- 863 (1015)
Q Consensus 787 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-d-- 863 (1015)
+|++++++.....+.+.|++++ ......- ...+-|+.++|+|+++++|.+- +
T Consensus 412 dGK~~vvaNdr~el~vididng----------------------nv~~idk---S~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 412 DGKKVVVANDRFELWVIDIDNG----------------------NVRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred CCcEEEEEcCceEEEEEEecCC----------------------CeeEecc---cccceeEEEEEcCCceeEEEecCcce
Confidence 9999999998888887766543 2221111 1567799999999999999996 5
Q ss_pred --CeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEE
Q 001776 864 --GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 864 --g~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~ 904 (1015)
..|+++|+.+++....-. ....=.+-+|.| |+++|..-+
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred eeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEEEe
Confidence 469999999877665433 334445678888 888776543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.8e-09 Score=126.00 Aligned_cols=491 Identities=11% Similarity=0.111 Sum_probs=278.2
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEE----EccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLY----TYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iw----d~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
...+.|.++.|-+|...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. .++..+.++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 345789999999999999999999999998 444432 22 2334567899999999999 6777777787776
Q ss_pred EEcCCCceE------------------------EEeeC------------------------CCCCEEEEeecccCCccE
Q 001776 492 WDAVTGTKQ------------------------YIFEG------------------------HESPVYSICPHHKENIQF 523 (1015)
Q Consensus 492 wd~~~~~~~------------------------~~~~~------------------------h~~~v~~i~~~~~~~~~~ 523 (1015)
.+ ++...+ ..|.| +...-..|+ +.+||.+
T Consensus 147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~IS--WRGDG~y 223 (928)
T PF04762_consen 147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRIS--WRGDGEY 223 (928)
T ss_pred Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEE--ECCCCcE
Confidence 53 111111 11111 111222344 4678899
Q ss_pred EEEEeC---C---CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeC--
Q 001776 524 IFSTAT---D---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG-- 595 (1015)
Q Consensus 524 l~s~~~---d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~-- 595 (1015)
+++.+. . ..+++|+-+ +..........+--.+++|.|.|++|++... ......|.+|. +.|-....|..
T Consensus 224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfE-rNGLrhgeF~l~~ 300 (928)
T PF04762_consen 224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFE-RNGLRHGEFTLRF 300 (928)
T ss_pred EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEe-cCCcEeeeEecCC
Confidence 988775 2 469999754 3333222322333457899999999998875 23344566665 44544444433
Q ss_pred -CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee--EEEecCCCCCCcceEEEcCC-CCEEEEEeCCCcEEEEEc
Q 001776 596 -LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKE-GILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 596 -~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iw~~ 671 (1015)
.....+..+.|++++..|+..-.|. |.+|...+.... +.+.... ...+..+.|+|. ...|...+.+|.+..++.
T Consensus 301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 2344789999999999999977655 999999887633 3343322 234556999994 466777777788877664
Q ss_pred cCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccce
Q 001776 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1015)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 751 (1015)
.-. ...+.... ++..-.+..-+..++
T Consensus 379 ~~~-----v~~s~~~~-------------------------------------------------~~D~g~vaVIDG~~l 404 (928)
T PF04762_consen 379 AWD-----VSRSPGSS-------------------------------------------------PNDNGTVAVIDGNKL 404 (928)
T ss_pred EEE-----EEecCCCC-------------------------------------------------ccCceEEEEEeCCeE
Confidence 311 11110000 000001111111345
Q ss_pred eeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCc
Q 001776 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI 831 (1015)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 831 (1015)
.+-.+.....|++.....+. -...|.+++|++++..+++...||.+.+|.+................+ ... .
T Consensus 405 llTpf~~a~VPPPMs~~~l~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~---~~~--~ 476 (928)
T PF04762_consen 405 LLTPFRRAVVPPPMSSYELE---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSI---SLD--S 476 (928)
T ss_pred EEecccccCCCchHhceEEc---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhc---ccc--c
Confidence 55554444334433222222 346899999999999899999999999998665422110000000000 000 0
Q ss_pred cccccCCCCCCCCCccEEEEccCCCEEEEEc-C---CeEEEEeCCCCc---eeEEeCCCCCCeeEEEEcCCCCcEEEEEE
Q 001776 832 LMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK---TMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 832 ~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-d---g~i~iwd~~~~~---~~~~l~~~~~~i~~l~~sp~d~~~la~g~ 904 (1015)
....... .....+..++|..+..+++... + ..+.++++...+ .......-...+..+...+ +...++.-.
T Consensus 477 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~ 553 (928)
T PF04762_consen 477 MDISDSE--LPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQT 553 (928)
T ss_pred ccccccc--cccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEE
Confidence 0000000 1345678888988887777665 3 468888874332 2333333345566666665 444466677
Q ss_pred cCCeEEEEEcccceE-EEEEcCccCCeEEEEEeCCCC---EEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCc
Q 001776 905 EDSSIQIYNVRVDEV-KTKLKGHQKRITGLAFSNTLN---VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD 980 (1015)
Q Consensus 905 ~dg~v~vwd~~~~~~-~~~l~~h~~~v~~l~~spdg~---~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v 980 (1015)
.+|.+...+...... +..|..... -..+....+.. .++.-+..|.+++ ++. .+. ..+
T Consensus 554 ~~G~v~~~~~~~~~~~~~~fp~~c~-~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~-----~la---------~~~ 614 (928)
T PF04762_consen 554 NDGKVFQLSSDGELSQIVKFPQPCP-WMEVCQINGSEDKRVLFGLSSNGRLYA----NSR-----LLA---------SNC 614 (928)
T ss_pred CCCEEEEeecCCCccccccCCCCCc-EEEEEEECCccceeEEEEECCCCEEEE----CCE-----EEe---------cCC
Confidence 899888666554321 223332212 22233333332 4554455555543 111 111 235
Q ss_pred eEEEEccCCCEEEE-EeCCeEEEEEcC
Q 001776 981 TRVQFHLDQTHLLA-VHETQIAIYEAP 1006 (1015)
Q Consensus 981 ~~l~fs~dg~~l~~-~~d~~i~vwd~~ 1006 (1015)
+++++. +.+|+. .....+++.++.
T Consensus 615 tSF~v~--~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 615 TSFAVT--DSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred ceEEEE--cCEEEEEecCceEEEEECc
Confidence 555553 444444 466667777775
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-14 Score=143.62 Aligned_cols=118 Identities=24% Similarity=0.393 Sum_probs=105.6
Q ss_pred CCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEE
Q 001776 843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 921 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~ 921 (1015)
.+.|..++|||||++||+.+ ||.++|+|+.+.+++..++.--+...|++||| ||++|++|++|..|.||.+..++++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44788899999999999999 99999999999998888887778899999999 99999999999999999999999999
Q ss_pred EEcCccCCeEEEEEeC-------------------------------C----C-------------CEEEEEeCCCcEEE
Q 001776 922 KLKGHQKRITGLAFSN-------------------------------T----L-------------NVLVSSGADSQLCV 953 (1015)
Q Consensus 922 ~l~~h~~~v~~l~~sp-------------------------------d----g-------------~~l~s~s~dg~v~v 953 (1015)
.-+||...|..|+|.| + + -.+.+.+.|-.+.+
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 0 1 24778899999999
Q ss_pred EEccCccc
Q 001776 954 WSTDGWEK 961 (1015)
Q Consensus 954 Wd~~~~~~ 961 (1015)
||+.....
T Consensus 449 WDlteD~L 456 (636)
T KOG2394|consen 449 WDLTEDVL 456 (636)
T ss_pred Eecchhhc
Confidence 99987543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=146.71 Aligned_cols=282 Identities=15% Similarity=0.147 Sum_probs=217.1
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 437 (1015)
....+.++.+|++ ++.|+.-|.|-.+|+.++++..... -...|.++.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 4568999999995 5667788999999999998876522 236899999999999999885
Q ss_pred CCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecc
Q 001776 438 SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517 (1015)
Q Consensus 438 ~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~ 517 (1015)
. ..+.|||-.. ..+.+ +. ....|..+.|.|.-- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|
T Consensus 190 K-~y~yvYD~~G-tElHC---lk-~~~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 K-KYVYVYDNNG-TELHC---LK-RHIRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred h-ceEEEecCCC-cEEee---hh-hcCchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 4 5599999654 33442 33 234689999999866 899999999999999999999999988888888888776
Q ss_pred cCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC
Q 001776 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1015)
Q Consensus 518 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~ 597 (1015)
.+ ..+-+|...|+|.+|.....+....+..|.++|.++++.++|.++++.+.|. .+.|||++....+.++....
T Consensus 262 ~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr----~~kIWDlR~~~ql~t~~tp~ 335 (545)
T KOG1272|consen 262 YN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR----KVKIWDLRNFYQLHTYRTPH 335 (545)
T ss_pred cc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc----ceeEeeeccccccceeecCC
Confidence 55 5888999999999999999889889999999999999999999999998865 59999999888777666522
Q ss_pred CCCeEEEEEeCCCCEEEEEeCCCcEEEEe-CCCCc--eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 598 KRSVGVVQFDTTKNRFLAAGDEFMIKFWD-MDNVN--LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 598 ~~~i~~v~~~~~~~~l~~~~~dg~i~vwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+...+++|..| +++.+....|.||. .-.+. .-..+-.|.....|..+.|.|-...|..|...|.-.+.=.-.|
T Consensus 336 --~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 336 --PASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred --Ccccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 55677888665 44455556799994 32221 1112222333458899999998888888887776666555555
Q ss_pred ceee
Q 001776 675 IRLL 678 (1015)
Q Consensus 675 ~~~~ 678 (1015)
+.-+
T Consensus 412 ePN~ 415 (545)
T KOG1272|consen 412 EPNY 415 (545)
T ss_pred CCCc
Confidence 3333
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-12 Score=145.38 Aligned_cols=236 Identities=12% Similarity=0.110 Sum_probs=157.0
Q ss_pred eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC---CCeEEEEEccCCceeeee
Q 001776 380 DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRNH 456 (1015)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~~ 456 (1015)
.|.+||.+...... +..+...+.+.+|||||+.|+..+. +..|.+|++.+|+...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888877654322 3446678999999999999987653 3579999998876322
Q ss_pred eEEecccCceeEEEEecCCCceEEE-EEeCCC--eEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC-CCe
Q 001776 457 LEIEAHVGSVNDLAFSYPNKQLSVV-TCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DGK 532 (1015)
Q Consensus 457 ~~~~~h~~~V~~~~~s~~~~~~~l~-s~s~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-dg~ 532 (1015)
+....+.+...+|+|||+. |+ +.+.+| .|++||+++++.... ..+...+....|+|+ |+.|+..+. ++.
T Consensus 238 --l~~~~~~~~~~~~SPDG~~--La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPD--G~~I~f~s~~~g~ 310 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK--LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPD--SQNLAYTSDQAGR 310 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE--EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCC--CCEEEEEeCCCCC
Confidence 2223334557899999994 44 334444 589999988876543 334455677778655 466766654 444
Q ss_pred EEEE--eCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 533 IKAW--LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 533 i~vw--d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
..+| |+.++.. ..+...........|+|||++++..+.+. +...|.+||+.++.... +.... ......|+|||
T Consensus 311 ~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~~--~~~~p~~SpDG 385 (429)
T PRK03629 311 PQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDTF--LDETPSIAPNG 385 (429)
T ss_pred ceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCCC--CCCCceECCCC
Confidence 4555 5554433 33333444556789999999998876543 34569999998886543 33221 23356899999
Q ss_pred CEEEEEeCCCc---EEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 611 NRFLAAGDEFM---IKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 611 ~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+.|+.++.++. ++++++ +|.....+..+ ...+...+|+|
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~--~~~~~~p~Wsp 427 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVST-DGRFKARLPAT--DGQVKFPAWSP 427 (429)
T ss_pred CEEEEEEcCCCceEEEEEEC-CCCCeEECccC--CCCcCCcccCC
Confidence 99999886654 677787 45555666543 44678888887
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-12 Score=126.17 Aligned_cols=299 Identities=15% Similarity=0.209 Sum_probs=186.9
Q ss_pred CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCC-CEEEEEeeCCCCCceEEEEeCCCC
Q 001776 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
.+..++|++.- .-++++..|-.|++||-...............|++++|-|.+ +.++++...+ |.+|.....
T Consensus 100 dlr~~aWhqH~--~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-----IciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQHI--IAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-----ICIWSDSRT 172 (445)
T ss_pred ceeeEeechhh--hhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-----eEEEEcCcc
Confidence 45567776644 357888999999999877633322223334589999999965 4566666544 999976531
Q ss_pred ----e--------eeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001776 588 ----A--------VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 588 ----~--------~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
. ....+.......|+++.|.+||..+++++ .|..|.|||..++..+..... +.+.++-+.|||||
T Consensus 173 ln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPdg 250 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCCC
Confidence 1 11122222224899999999999999998 788999999999887766532 24567889999999
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCC
Q 001776 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSR 734 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1015)
.+|+.++-|+..++|+........+
T Consensus 251 d~lfaAt~davfrlw~e~q~wt~er------------------------------------------------------- 275 (445)
T KOG2139|consen 251 DVLFAATCDAVFRLWQENQSWTKER------------------------------------------------------- 275 (445)
T ss_pred CEEEEecccceeeeehhcccceecc-------------------------------------------------------
Confidence 9999999999999996543211000
Q ss_pred CCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCC
Q 001776 735 NFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTG 814 (1015)
Q Consensus 735 ~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~ 814 (1015)
|-+ ..+.|+..+|+|+|++|+.+... .-++|.+......+.+
T Consensus 276 -------------------w~l------------------gsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~ 317 (445)
T KOG2139|consen 276 -------------------WIL------------------GSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVF 317 (445)
T ss_pred -------------------eec------------------cCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccc
Confidence 111 23478889999999988776654 3345555433322222
Q ss_pred ceeccc--CceecCCCCCcccc-ccCCCCCCCCCccEEEEccCCCEEEEEc-C--------CeEEEEeCCCCceeEEe--
Q 001776 815 KATTNQ--APQLWQPPSGILMT-NDISDTNPEDAVPCFALSKNDSYVMSAS-G--------GKISLFNMMTFKTMTTF-- 880 (1015)
Q Consensus 815 ~~~~~~--~~~~~d~~~~~~~~-~~l~~~~~~~~v~~l~~s~dg~~la~~s-d--------g~i~iwd~~~~~~~~~l-- 880 (1015)
....+. ..-+-|+..-...+ ..+ --+.+.+++|.|.|.+||+.. . ..|.+||....-.+.-.
T Consensus 318 ~~~~~~k~~lliaDL~e~ti~ag~~l----~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~c 393 (445)
T KOG2139|consen 318 LRPQSIKRVLLIADLQEVTICAGQRL----CCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYC 393 (445)
T ss_pred cCcccceeeeeeccchhhhhhcCccc----ccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEec
Confidence 211110 11112221111111 001 356789999999999999986 2 23667776543222211
Q ss_pred ---CCCCCCeeEEEEcC--CCCcEEEEEEcCCeEEEEEcc
Q 001776 881 ---MPPPPAATFLAFHP--QDNNIIAIGMEDSSIQIYNVR 915 (1015)
Q Consensus 881 ---~~~~~~i~~l~~sp--~d~~~la~g~~dg~v~vwd~~ 915 (1015)
.+.. -..+.|+| .++.+|.++-..|.+.-|++.
T Consensus 394 g~i~ge~--P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 394 GMIGGEY--PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred ccccCCC--CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1222 33445544 366777778778888877764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=119.98 Aligned_cols=239 Identities=14% Similarity=0.218 Sum_probs=154.5
Q ss_pred ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEE-EeCC------CcEEEE
Q 001776 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA-AGDE------FMIKFW 625 (1015)
Q Consensus 553 ~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~-~~~d------g~i~vw 625 (1015)
...+++|+.|...++++..+| .++|+.+--+....-..+.. .+.-+.+--..++++. ||.+ ..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-----friyn~~P~ke~~~r~~~~~-G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-----FRIYNCDPFKESASRQFIDG-GFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-----eEEEecCchhhhhhhccccC-chhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 445689999999999987655 88888764322211111111 1211222222345544 3322 469999
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccc
Q 001776 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (1015)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1015)
|=...+++..+.. ..+|.+|.+.++ .+++. ..+.|+||...+..+.+..++.....
T Consensus 81 DD~k~~~i~el~f---~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NP------------------ 136 (346)
T KOG2111|consen 81 DDLKERCIIELSF---NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNP------------------ 136 (346)
T ss_pred ecccCcEEEEEEe---ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCC------------------
Confidence 9777788888865 457899999876 45544 36799999998665555555432211
Q ss_pred cccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEc
Q 001776 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (1015)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 785 (1015)
....++.-.
T Consensus 137 -----------------------------------------------------------------------kGlC~~~~~ 145 (346)
T KOG2111|consen 137 -----------------------------------------------------------------------KGLCSLCPT 145 (346)
T ss_pred -----------------------------------------------------------------------CceEeecCC
Confidence 001111111
Q ss_pred CCCcEEEEecc-CcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc-C
Q 001776 786 NSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 863 (1015)
Q Consensus 786 ~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-d 863 (1015)
.+...|+.-+. -|.++|-++...... ....+. .|...|.|++.+.+|.++|+++ .
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~---------------------~p~~I~--AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPN---------------------APSIIN--AHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcC---------------------CceEEE--cccCceeEEEEcCCccEEEEeccC
Confidence 12222333222 366666555422111 001122 2999999999999999999999 6
Q ss_pred Ce-EEEEeCCCCceeEEeCC--CCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEccc
Q 001776 864 GK-ISLFNMMTFKTMTTFMP--PPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1015)
Q Consensus 864 g~-i~iwd~~~~~~~~~l~~--~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~ 916 (1015)
|+ |||||..+|+.+.+++- ....|.+++||| +..+||++++.|+|.|+.+..
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 77 99999999999999863 235699999999 999999999999999999865
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-12 Score=145.01 Aligned_cols=238 Identities=13% Similarity=0.078 Sum_probs=158.0
Q ss_pred CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceeee
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRN 455 (1015)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~ 455 (1015)
..|.+||...+.... +..+...+.+.+|+|||+.|+.++.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 358888886543322 45577789999999999999988743 469999998876432
Q ss_pred eeEEecccCceeEEEEecCCCceEEEEEeCCC--eEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCCe
Q 001776 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK 532 (1015)
Q Consensus 456 ~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg--~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg~ 532 (1015)
+..+.+...+.+|+|||+. ++++.+.++ .|++||+.+++. ..+..+.......+|+++ |+.++.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~ 315 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGR 315 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCC--CCEEEEEECCCCC
Confidence 3344455668899999995 334555555 699999988765 345555555566777654 46676655 4454
Q ss_pred --EEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 533 --IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 533 --i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
|.++|+.++... .+...+......+|+|||++++....+ ++...|.+||+.++.......+. ......|+|||
T Consensus 316 ~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG 390 (433)
T PRK04922 316 PQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNG 390 (433)
T ss_pred ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCCC---CCCCceECCCC
Confidence 666666554432 222333445578999999999887643 23457999999887765332221 23456899999
Q ss_pred CEEEEEeC---CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 611 NRFLAAGD---EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 611 ~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+.++..+. .+.|+++++.. .....+..+ ...+...+|+|
T Consensus 391 ~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~--~g~~~~p~wsp 432 (433)
T PRK04922 391 SMVLYATREGGRGVLAAVSTDG-RVRQRLVSA--DGEVREPAWSP 432 (433)
T ss_pred CEEEEEEecCCceEEEEEECCC-CceEEcccC--CCCCCCCccCC
Confidence 98887764 34688888854 444555433 34566777876
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-10 Score=123.06 Aligned_cols=527 Identities=13% Similarity=0.152 Sum_probs=303.9
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
......|++|+.... ++|+|+.||.++|-.+.+...-...+ -+...........+.||++.|.-+.|+.+.+.|-
T Consensus 13 nnvkL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT 87 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT 87 (1189)
T ss_pred CCceEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEecccccccc
Confidence 445678999999888 78999999999999987654221100 0111112223335899999999999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC------------------
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT------------------ 496 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~------------------ 496 (1015)
+...+|.|.||-+-.|.-.... .-....+.|.+++|+.||. .|...-.||.|.+=.++.
T Consensus 88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLW 164 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchheccceee
Confidence 9999999999998877533221 1233566789999999998 455555565554322211
Q ss_pred -------------CceE-----------------E----EeeCCCCCEEEEeecc------cCCccEEEEEeCCCeEEEE
Q 001776 497 -------------GTKQ-----------------Y----IFEGHESPVYSICPHH------KENIQFIFSTATDGKIKAW 536 (1015)
Q Consensus 497 -------------~~~~-----------------~----~~~~h~~~v~~i~~~~------~~~~~~l~s~~~dg~i~vw 536 (1015)
|++. . .+......|..+.|.. .++...++.+-.+|.+.+.
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 1100 0 0001111233444432 1244678889999998887
Q ss_pred eCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC----C-ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC
Q 001776 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG----E-SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (1015)
Q Consensus 537 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~----~-~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 611 (1015)
.-.+......+.. +-.+..+.|+++|..|++++.+.+. + +.|..|. .-|+.+.+++.... .|+.++|-..|-
T Consensus 245 R~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gL 321 (1189)
T KOG2041|consen 245 RSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGL 321 (1189)
T ss_pred hhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCce
Confidence 6555544444443 3578899999999999999875432 2 2344444 45777888887766 899999988776
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccc
Q 001776 612 RFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRV 691 (1015)
Q Consensus 612 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 691 (1015)
.++.+ .|+.|++=+++..-.-..+. ..+.|--.+.- .....|.+||..+.++.++...+.......
T Consensus 322 riA~A-vdsfiyfanIRP~ykWgy~e--------~TvVy~y~~~e----~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~- 387 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFANIRPEYKWGYIE--------ETVVYVYQKEE----LPQYGIMFWDTKTNEKTVKTVTHFENMAFY- 387 (1189)
T ss_pred EEEEE-ecceEEEEeecccceEEEee--------eEEEEEEccCC----CcceEEEEEecccChhhhhhhcceeehhee-
Confidence 66655 46788887765432222221 01111111100 012357889998886666555432211100
Q ss_pred cccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcc------e
Q 001776 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQ------C 765 (1015)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~------~ 765 (1015)
..+- .++.-..|+.+.-+..- ...+. |
T Consensus 388 --------~ehC-------------------------------------vL~~~~d~~~i~e~s~l--e~~~~~~~l~LC 420 (1189)
T KOG2041|consen 388 --------REHC-------------------------------------VLINRQDDGVIPEYSTL--ENRSRVYFLQLC 420 (1189)
T ss_pred --------cccE-------------------------------------EEEeccccCCCcchhhh--hcccceEEEeee
Confidence 0000 11111111111111000 00000 0
Q ss_pred eEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCce---ecccCceecCCCCCc----c--cccc
Q 001776 766 RSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA---TTNQAPQLWQPPSGI----L--MTND 836 (1015)
Q Consensus 766 ~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~~~~~~~~~d~~~~~----~--~~~~ 836 (1015)
..+-.+....--.|.-.-..-++..++.++.+ ...+|.+...++...-.. ...+..+.=|..+|. + -..+
T Consensus 421 NSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt 499 (1189)
T KOG2041|consen 421 NSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKT 499 (1189)
T ss_pred cccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeecccee
Confidence 00000000111223333344466677777766 577888765533211110 000011111222331 0 1122
Q ss_pred CCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcc
Q 001776 837 ISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1015)
Q Consensus 837 l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~ 915 (1015)
+.| ...+|.+++.| .+++..+- .|.|.-|.+.+.-...... -...|.+++..- +...+|.-..-|.+.+.|+.
T Consensus 500 ~~G--~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNC-nstRlAiId~~gv~tf~dLd 573 (1189)
T KOG2041|consen 500 LLG--SKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNC-NSTRLAIIDLVGVVTFQDLD 573 (1189)
T ss_pred ecc--CCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccc-cCchheeEeecc-Ccchhhhhhhhceeeeeecc
Confidence 333 78899998885 56777776 8999999998876655544 356688888877 67778888888888888876
Q ss_pred ---cceEEE-EEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 916 ---VDEVKT-KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 916 ---~~~~~~-~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
+|..+. .+......|+.+.|..|...|+.--+-..++|++-.+.+
T Consensus 574 ~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 574 YDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred cccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 344333 444456679999999888766655555556777654433
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-12 Score=142.42 Aligned_cols=237 Identities=12% Similarity=0.024 Sum_probs=160.2
Q ss_pred CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC---CCeEEEEEccCCceeee
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---KHIVHLYTYHGGDELRN 455 (1015)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---dg~v~iwd~~~~~~~~~ 455 (1015)
..|.+||........ +..|...+.+.+|||||+.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 368888876554322 4567889999999999999998764 468999999987643
Q ss_pred eeEEecccCceeEEEEecCCCceEEEEEeCCCe--EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC-CC-
Q 001776 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV--IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG- 531 (1015)
Q Consensus 456 ~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~--v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-dg- 531 (1015)
.+..+.+.+...+|+|||+. ++++.+.++. |++||+.++.. ..+..+........|+++ |+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~ 313 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPD--GSQIVFESDRSGS 313 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCC--CCEEEEEECCCCC
Confidence 34556677889999999995 3445666654 77789877765 445556655666777654 466766553 33
Q ss_pred -eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 532 -KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 532 -~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
.|++||+...... .+......+....|+|||+.|+....+. +...|.+||..++.. +.+... ..+....|+|||
T Consensus 314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG 388 (435)
T PRK05137 314 PQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNG 388 (435)
T ss_pred CeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccCC--CCCCCCeECCCC
Confidence 5778887654433 3333344566788999999999876533 345799999865543 333321 135668899999
Q ss_pred CEEEEEeCC------CcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 611 NRFLAAGDE------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 611 ~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
+.|+..+.+ ..++++|+..+.. ..+.. ...+...+|+|
T Consensus 389 ~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~---~~~~~~p~Wsp 432 (435)
T PRK05137 389 RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT---PGDASDPAWSP 432 (435)
T ss_pred CEEEEEEccCCCCCcceEEEEECCCCce-EEccC---CCCccCcccCC
Confidence 998876532 3688888876554 34432 22456677776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-13 Score=136.11 Aligned_cols=252 Identities=10% Similarity=0.102 Sum_probs=167.2
Q ss_pred CCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEE-----ccCCC
Q 001776 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW-----SPDGT 431 (1015)
Q Consensus 357 ~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-----spdg~ 431 (1015)
+.++...++-.|++++.-- ...+++|+...+..+.. ++....+.+ ....|-+| .|++-
T Consensus 124 g~~~~~~~~~~gd~lcFnv--g~~lyv~~~~g~~~~~~-------------pi~k~~y~g--t~P~cHdfn~~~a~~~g~ 186 (636)
T KOG2394|consen 124 GIVTNTNQSGKGDRLCFNV--GRELYVYSYRGAADLSK-------------PIDKREYKG--TSPTCHDFNSFTATPKGL 186 (636)
T ss_pred cceeeccccCCCCEEEEec--CCeEEEEEccCcchhcc-------------chhhhcccC--CCCceecccccccCCCCc
Confidence 3566666777777665533 34688999886544332 111212222 22334444 35677
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEe--cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCC
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIE--AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~--~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~ 509 (1015)
-|+.|-..|.|.+.|....+ +..+.... -.+..|+|+.|-|.+.. .++.+-.+|.++++|.. +...
T Consensus 187 dllIGf~tGqvq~idp~~~~-~sklfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~ 254 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFE-VSKLFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCG 254 (636)
T ss_pred ceEEeeccCceEEecchhhH-HHHhhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------cccc
Confidence 88899999999998876522 22111111 13468999999998876 67778889999999961 1112
Q ss_pred EEEEeecccCCccEEEEEeCCCeEEEEeC-CCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 510 VYSICPHHKENIQFIFSTATDGKIKAWLY-DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 510 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
.+...+..-.++..+... .|-- .+...+..+......|...+|+|||++|++.+.|+ .++|||..+.+
T Consensus 255 ~t~p~~~~~k~~~~f~i~-------t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG----fLRvF~fdt~e 323 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAIL-------TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG----FLRIFDFDTQE 323 (636)
T ss_pred CCCCcccccCCCCeeEEe-------eeeccccCCccceeEeccccccceeEcCCCceEEEEecCc----eEEEeeccHHH
Confidence 222222222222333322 1111 11133333333445889999999999999998755 79999999888
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEc
Q 001776 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 589 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s 651 (1015)
++..++..-. ...|++|+|||++|++||+|.-|.||.+..++.+..-+ +|...|+.|+|.
T Consensus 324 Llg~mkSYFG-GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 LLGVMKSYFG-GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHhhcc-ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 7776666555 78899999999999999999999999999888877665 448899999998
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-11 Score=127.32 Aligned_cols=284 Identities=14% Similarity=0.112 Sum_probs=191.4
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
.-++..+.|||.|. +|++... ..|.+|.-.....+.. -....|..+.|||.+++|.+
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~t 88 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVT 88 (561)
T ss_pred CcchhheeecCcch-heehhhc-cceEEccccchhheee---------------------eecCCceecccCcccceeee
Confidence 44788999999999 5565444 4499999877664432 12257999999999999998
Q ss_pred EECCC---------------eEEEEEccCCceeeeeeEEecccCc--ee-EEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 436 AYSKH---------------IVHLYTYHGGDELRNHLEIEAHVGS--VN-DLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 436 ~~~dg---------------~v~iwd~~~~~~~~~~~~~~~h~~~--V~-~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
=+..+ .+.+||+.+|..+. .+.....+ .+ -+.|+-+++ +++-- ....++|+++ ++
T Consensus 89 w~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~ 161 (561)
T COG5354 89 WSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TD 161 (561)
T ss_pred eccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CC
Confidence 65433 49999999998776 44444444 44 688999888 44433 3457999997 43
Q ss_pred ceE-EEeeCC-CCCEEEEeecccCCccEEEE-----EeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEe
Q 001776 498 TKQ-YIFEGH-ESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 498 ~~~-~~~~~h-~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
... ..+..- ...|....++|.+++..|+. ...++.+++|.+.....+.........-..+.|.+.|+++++-.
T Consensus 162 n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~ 241 (561)
T COG5354 162 NIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLV 241 (561)
T ss_pred ccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEE
Confidence 322 111111 24567777877766666554 45678899999886555544433333445688999999877643
Q ss_pred eCC-------CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCceeEEEecCCC
Q 001776 571 TNK-------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWDMDNVNLLASIDADGG 641 (1015)
Q Consensus 571 ~d~-------~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~ 641 (1015)
... -++..++++++....+.... ... ++|...+|.|.++.+++.+ .+..+.++|++.. ....+..
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe--- 315 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE--- 315 (561)
T ss_pred EEeeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCC---
Confidence 211 12356888888744332222 323 3899999999998877755 7888999999765 4444432
Q ss_pred CCCcceEEEcCCCCEEEEEeCC---CcEEEEEccCCce
Q 001776 642 LQASPCIRFNKEGILLAVSTND---NGIKILANADGIR 676 (1015)
Q Consensus 642 ~~~v~~v~~s~~~~~l~~~~~d---g~i~iw~~~~~~~ 676 (1015)
..=+.+.|+|.+++++.++-| |.+.+|+......
T Consensus 316 -~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 316 -QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred -cccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 233678999999999987754 6788888766533
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=141.43 Aligned_cols=240 Identities=12% Similarity=0.187 Sum_probs=166.1
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CC
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DG 430 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg 430 (1015)
-+|++.|.|++|+.+|. +|++|+.|-.+.|||.-..+.++. +-.||...|.++.|-| +.
T Consensus 47 ~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred ccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCCC
Confidence 35999999999999999 899999999999999987776654 2478999999999999 66
Q ss_pred CEEEEEECCCeEEEEEccCCc-------eeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-e---
Q 001776 431 TLFGVAYSKHIVHLYTYHGGD-------ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-K--- 499 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~-------~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~--- 499 (1015)
+.+++|..|..|+++|+...+ .......+..|...|..++-.|++.+ .+.+++.||+++-+|++... +
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCcc
Confidence 789999999999999998521 11222246679999999999999976 79999999999999998632 1
Q ss_pred ---EE---EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC-----CCCceEEEE-ECCCCCEEE
Q 001776 500 ---QY---IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA-----PGHSSTMMA-YSADGARLF 567 (1015)
Q Consensus 500 ---~~---~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~~~-~s~~~~~l~ 567 (1015)
.. .+...--...++.++|..+ .+|++|+.|-..++||.+.......-.+ ......++. |+|.+-
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl--- 262 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL--- 262 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---
Confidence 11 1111123456777887665 6999999999999999653222111100 011112222 223221
Q ss_pred EEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 636 (1015)
.. ..+...... ..++-+.|+|+|..+++.-....|+++|+..++....+
T Consensus 263 -kn--------------~~gn~~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 263 -KN--------------SQGNLDRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred -cC--------------cccccccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 00 011111000 13566889999977766555568999999887765554
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-11 Score=127.81 Aligned_cols=353 Identities=14% Similarity=0.159 Sum_probs=214.4
Q ss_pred CeEEEEeCCCCCceee-ecC--CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEe
Q 001776 531 GKIKAWLYDNLGSRVD-YDA--PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD 607 (1015)
Q Consensus 531 g~i~vwd~~~~~~~~~-~~~--~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~ 607 (1015)
-.+.+|+......... +.. ....++..+++++|++++.+.. ..+.|++..++..+.+.... ....+-|+
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~-----~~v~i~~~~~~~~~lt~~~~---~~~~L~fS 82 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDN-----QVVKVFEIATLKVVLCVELK---KTYDLLFS 82 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcC-----CeEEEEEccCCcEEEEeccc---eeeeeeec
Confidence 3456676543222222 211 2345778899999999998763 24999998888644433332 56789999
Q ss_pred CCCCEEEEEe-----C-----CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCcee
Q 001776 608 TTKNRFLAAG-----D-----EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (1015)
Q Consensus 608 ~~~~~l~~~~-----~-----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 677 (1015)
|.+.++.+-- . .-.+.+|++.++.....++.....+ ++..|+.|..+.| --..+.+.+|++.+-...
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~--W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG--WVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI 159 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC--cccccccchhhhh-hhhcceEEEEecCCccce
Confidence 9999887621 1 2357899999966666565432222 5888998875544 224568999998764333
Q ss_pred eeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeec
Q 001776 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (1015)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~ 757 (1015)
...+........ .+++... ...+..+.+. ..+.-..+++|.+.
T Consensus 160 ~~kl~~~~i~~f---------------------~lSpgp~-----~~~vAvyvPe-----------~kGaPa~vri~~~~ 202 (566)
T KOG2315|consen 160 QHKLSVSGITML---------------------SLSPGPE-----PPFVAVYVPE-----------KKGAPASVRIYKYP 202 (566)
T ss_pred eeeeeccceeeE---------------------EecCCCC-----CceEEEEccC-----------CCCCCcEEEEeccc
Confidence 333332111110 0111100 0011111111 22333567888766
Q ss_pred ccc--CCcceeEeccCCCcCCccEEEEEEcCCCcEEEEe-ccCcEEEEeeccccCCCCCCceecccCceecCCCCCcccc
Q 001776 758 EIT--EPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL-ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (1015)
Q Consensus 758 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 834 (1015)
... .+-..+.+ ....-..+.|.+-|.-|++. +.| ++... ...-...++++.+.+ |....
T Consensus 203 ~~~~~~~~a~ksF------Fkadkvqm~WN~~gt~LLvLastd-------VDktn----~SYYGEq~Lyll~t~-g~s~~ 264 (566)
T KOG2315|consen 203 EEGQHQPVANKSF------FKADKVQMKWNKLGTALLVLASTD-------VDKTN----ASYYGEQTLYLLATQ-GESVS 264 (566)
T ss_pred cccccchhhhccc------cccceeEEEeccCCceEEEEEEEe-------ecCCC----ccccccceEEEEEec-CceEE
Confidence 221 11112221 12223456677777654432 221 11111 111122244555555 44333
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEc---CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC---Ce
Q 001776 835 NDISDTNPEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SS 908 (1015)
Q Consensus 835 ~~l~~~~~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d---g~ 908 (1015)
..+. ..++|.++.|+|+|+-+++.. -.++.|||++ +..+..+ ..++-+++-|+| .|++++.++-+ |.
T Consensus 265 V~L~---k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 265 VPLL---KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGD 337 (566)
T ss_pred EecC---CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCc
Confidence 3343 488999999999999887765 4789999984 4555554 467778999999 89999888765 68
Q ss_pred EEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeC------CCcEEEEEccC
Q 001776 909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA------DSQLCVWSTDG 958 (1015)
Q Consensus 909 v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~------dg~v~vWd~~~ 958 (1015)
|.|||+.+.+++..+.+-.. +-+.|+|||.+++|++. |+.++||++.+
T Consensus 338 mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999999988875443 56899999999998875 67899999876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-12 Score=143.58 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=147.1
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~ 490 (1015)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 34577889999999999999987653 359999999886432 3334456678999999994 334667788766
Q ss_pred EEEc--CCCceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCCeEEEEeCCCC-CceeeecCCCCceEEEEECCCCCEE
Q 001776 491 VWDA--VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNL-GSRVDYDAPGHSSTMMAYSADGARL 566 (1015)
Q Consensus 491 vwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l 566 (1015)
+|.+ ..+. ...+..+........|+++ |+.++..+ .+|...+|.++.. .....+...+......+|+|||+++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence 6654 4443 5556555555566777654 46666554 3566677765422 2222222233344567899999999
Q ss_pred EEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEEecCCCCC
Q 001776 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASIDADGGLQ 643 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~ 643 (1015)
+..+.++ +...|.+||+.+++........ ......|+|||+.|+.++.++ .+++.++ ++.....+..+ ..
T Consensus 343 a~~s~~~-g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~--~g 415 (427)
T PRK02889 343 AYISRVG-GAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQ--GG 415 (427)
T ss_pred EEEEccC-CcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecC--CC
Confidence 9876543 2457999999888755433221 235678999999998877433 3666666 45555555533 34
Q ss_pred CcceEEEcCC
Q 001776 644 ASPCIRFNKE 653 (1015)
Q Consensus 644 ~v~~v~~s~~ 653 (1015)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 5677788873
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-10 Score=130.93 Aligned_cols=195 Identities=13% Similarity=0.175 Sum_probs=150.5
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCC-----CEEEEEEccCCCE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTA-----SVNRVMWSPDGTL 432 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~ 432 (1015)
.|....+.-+.+ .++.++.++.+.+||...+..... ..+.. ...-+-++++.-+
T Consensus 89 wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~ 147 (967)
T KOG0974|consen 89 WIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY 147 (967)
T ss_pred cccccchhhhcc-eEEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence 444455555566 578888899999999988765543 11222 2222445777889
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE-EeeCCCCCEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHESPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~h~~~v~ 511 (1015)
+++|+.-+.|.+|+....+... .+.+|.+.|.++.|+.||. ++++.|.|.++++|++++++... ..-+|+.+|.
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred EEeccccccEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence 9999999999999988332211 4789999999999999999 89999999999999999988776 7778999999
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
.++|.+. .+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++.|+ .+++||....
T Consensus 223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds----~lk~~~l~~r 290 (967)
T KOG0974|consen 223 ACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDS----TLKLWDLNGR 290 (967)
T ss_pred EEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCc----chhhhhhhcc
Confidence 9999754 7999999999999976643333 44444 34789999999998999988755 5999987643
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.1e-12 Score=139.31 Aligned_cols=236 Identities=10% Similarity=0.073 Sum_probs=152.5
Q ss_pred CccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEe--cCCeEEEEEcCCcceEeEeeeEEEeccCCCcccccccc
Q 001776 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGT--NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS 414 (1015)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (1015)
|..+..|.... .....+...+.+.+|||||+.++++.. .+..|++|++.+++... +
T Consensus 181 l~~~d~dg~~~--~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l 238 (429)
T PRK03629 181 LRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------V 238 (429)
T ss_pred EEEEcCCCCCC--EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------c
Confidence 44444444322 223346678999999999997665543 24579999998876433 1
Q ss_pred ccCCCCEEEEEEccCCCEEEEE-ECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC-C--e
Q 001776 415 SDYTASVNRVMWSPDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-R--V 488 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d-g--~ 488 (1015)
....+.+..++|||||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+.+ + .
T Consensus 239 ~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~ 312 (429)
T PRK03629 239 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQ 312 (429)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCce
Confidence 2222334568999999998865 3344 5888999887643 2444555678999999999 56655543 4 4
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCC---CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|+++|+.+++. ..+..+........|+| +|+.++..+.+ ..|.+||+.++.... +.. ........|+|||+.
T Consensus 313 Iy~~d~~~g~~-~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAP-QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCe-EEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCE
Confidence 55557666654 33433444455566755 44677665543 358889988765432 222 223346789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
|+..+.++. ...+.++++ +|.....+.++.. .+...+|+|
T Consensus 388 i~~~s~~~~-~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGM-GSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEEEEcCCC-ceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 999887643 456888887 4555566666554 667777876
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-10 Score=122.60 Aligned_cols=282 Identities=12% Similarity=0.132 Sum_probs=184.9
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
..+++..++|++|+ ++|. +.+..+.|++..++..+.+ .....++++.|||.|.+|.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~-~~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAY-SDNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEE-EcCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999998 5555 4567899999988863322 11228899999999999876
Q ss_pred E-----ECC-----CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeC
Q 001776 436 A-----YSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 436 ~-----~~d-----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 505 (1015)
= ..+ -.+.+|+++++.... .+......-++..|+.|.. ++.--..+.+.+|++.+-+.+. -.-
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl 163 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKL 163 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eee
Confidence 3 222 247799999954322 2222222226899999987 4554556789999987643332 122
Q ss_pred CCCCEEEEeecccCCccEEEE-----EeCCCeEEEEeCCCCCceeeec---CCCCceEEEEECCCCCEEEE-Eee--CC-
Q 001776 506 HESPVYSICPHHKENIQFIFS-----TATDGKIKAWLYDNLGSRVDYD---APGHSSTMMAYSADGARLFS-CGT--NK- 573 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~~-~~~--d~- 573 (1015)
|...|+.+.+++.+.-..+++ .+.-+.+++|............ .-...-..+.|++-|.-|++ ++. |.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 567788888888755455554 3556779999776322211111 11112345778887775443 222 22
Q ss_pred ----CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEE--eCCCcEEEEeCCCCceeEEEecCCCCCCcce
Q 001776 574 ----EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA--GDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (1015)
Q Consensus 574 ----~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~ 647 (1015)
-++..+++.++..... .+.....++|.++.|+|++..++++ -.-..+.|+|++ +.++..+. .++=++
T Consensus 244 n~SYYGEq~Lyll~t~g~s~--~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~ 316 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGESV--SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNT 316 (566)
T ss_pred CccccccceEEEEEecCceE--EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccc
Confidence 1355688888773333 3334444599999999999776654 367789999985 56665554 345589
Q ss_pred EEEcCCCCEEEEEeCC---CcEEEEEccCC
Q 001776 648 IRFNKEGILLAVSTND---NGIKILANADG 674 (1015)
Q Consensus 648 v~~s~~~~~l~~~~~d---g~i~iw~~~~~ 674 (1015)
+-|+|.|++++.++-+ |.+-|||+.+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 9999999999988744 78999998774
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.5e-12 Score=124.99 Aligned_cols=273 Identities=11% Similarity=0.111 Sum_probs=192.5
Q ss_pred cCCCeeEEEeccCCCeEEEEEe-cCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGT-NMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
....|..++|--+++.-+..+. .|-.+............. +|++. .......+|..++.. ...|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~L 118 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGTL 118 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCEE
Confidence 4457778888777654444444 566677777666554432 12221 123344566665553 3367
Q ss_pred EEEECCCeEEEEEccCCceee-eeeEEecccCceeEEEEecCCCceEEEEEeCC--CeEEEEEcCCCceEEEeeCC----
Q 001776 434 GVAYSKHIVHLYTYHGGDELR-NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIFEGH---- 506 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~-~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~~~h---- 506 (1015)
++|-.+|.+.+|..+.+..-. ....+..+ ..+..|.-++...+ ++++|+.. ..+.+||+.+.+.+.+-+.-
T Consensus 119 itc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~ 196 (412)
T KOG3881|consen 119 ITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDR 196 (412)
T ss_pred EEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCcc
Confidence 778899999999998543211 11123323 45677777777775 67779998 89999999988666543321
Q ss_pred -----CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 507 -----ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 507 -----~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
.-.++++.|.+..+...+++++.-+.+++||.+.+.. ...+....++++++...|+++.++++..- +.+.
T Consensus 197 L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~----g~l~ 272 (412)
T KOG3881|consen 197 LGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK----GQLA 272 (412)
T ss_pred ccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc----chhh
Confidence 1234566776664457999999999999999986554 45677778899999999999999998653 3599
Q ss_pred EEeCCCCeeeEE-eeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC
Q 001776 581 EWNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 581 iwd~~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 652 (1015)
.||.++++.... +.+..+ .++++..+|.+.+++++|-|..|+|+|+.+.+++..... ...++++.+.+
T Consensus 273 ~FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv---Ks~lt~il~~~ 341 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV---KSRLTFILLRD 341 (412)
T ss_pred eecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh---hccccEEEecC
Confidence 999999998887 565555 899999999999999999999999999999777665543 23456666654
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=137.81 Aligned_cols=231 Identities=13% Similarity=0.161 Sum_probs=189.6
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
-.-+.+.++.+|++|+.|+..|.|-.+|..++.... ++. -...|.++.|..+.+ +++. .....++||| ..|.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD-~~Gt 201 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYD-NNGT 201 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHh-hhhceEEEec-CCCc
Confidence 355778999999999999999999999999987555 332 345689999998887 4554 4567899999 8899
Q ss_pred eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCce
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~ 578 (1015)
.++.++.| ..|..+.|.|.. -+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-.|.. .++
T Consensus 202 ElHClk~~-~~v~rLeFLPyH--fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRH-IRVARLEFLPYH--FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhc-Cchhhhcccchh--heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 99988865 458888887765 57888899999999999999998888888888888999998877777654 557
Q ss_pred EEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEE
Q 001776 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLA 658 (1015)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 658 (1015)
|.+|.....+++..+..|.+ +|.++++.++|.+++|+|.|..++|||++....+.++.. ......+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCCcccccccccc-cee
Confidence 99999999999999999987 999999999999999999999999999998887766654 2355778888765 444
Q ss_pred EEeCCCcEEEEE
Q 001776 659 VSTNDNGIKILA 670 (1015)
Q Consensus 659 ~~~~dg~i~iw~ 670 (1015)
. +....+.||.
T Consensus 350 ~-~~G~~v~iw~ 360 (545)
T KOG1272|consen 350 L-SYGDHVQIWK 360 (545)
T ss_pred e-ecCCeeeeeh
Confidence 3 4455889995
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=138.64 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=145.9
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEec--CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
...+...+.+.+|+|||+.++++... +..|++||+.+++... +....+...+.+||||
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFSPD 258 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceECCC
Confidence 34577789999999999966555433 3469999998876543 2233445567899999
Q ss_pred CCEEEE-EECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCe--EEEEEcCCCceEEEe
Q 001776 430 GTLFGV-AYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRV--IKVWDAVTGTKQYIF 503 (1015)
Q Consensus 430 g~~las-~~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~--v~vwd~~~~~~~~~~ 503 (1015)
|+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+ .|+.++ .+|. |+++|+.+++... +
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~-l 331 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAER-L 331 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEE-e
Confidence 998864 45555 5999999887632 3445655667889999999 566555 4444 7777776665433 2
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCCC---eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
..+.......+|+++ |+.|+..+.++ .|.+||+.++... .+. +........|+|||++++..+.++ +...|+
T Consensus 332 t~~g~~~~~~~~SpD--G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~-g~~~L~ 406 (433)
T PRK04922 332 TFQGNYNARASVSPD--GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREG-GRGVLA 406 (433)
T ss_pred ecCCCCccCEEECCC--CCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecC-CceEEE
Confidence 223333445677654 46777654433 5899998776544 332 222445678999999998877653 456799
Q ss_pred EEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 581 EWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
+++... .....+..+.. .+...+|+|
T Consensus 407 ~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 407 AVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred EEECCC-CceEEcccCCC-CCCCCccCC
Confidence 998854 44444443332 455566665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-11 Score=121.41 Aligned_cols=153 Identities=16% Similarity=0.233 Sum_probs=109.9
Q ss_pred ccEEEEccCCCEEEEEcC-----------CeEEEEeCCC-CceeEEeCC-CCCCeeEEEEcCCCCcEEEE--EEcCCeEE
Q 001776 846 VPCFALSKNDSYVMSASG-----------GKISLFNMMT-FKTMTTFMP-PPPAATFLAFHPQDNNIIAI--GMEDSSIQ 910 (1015)
Q Consensus 846 v~~l~~s~dg~~la~~sd-----------g~i~iwd~~~-~~~~~~l~~-~~~~i~~l~~sp~d~~~la~--g~~dg~v~ 910 (1015)
-..+.|+++|.+|++-.+ +...+|.++. ......+.- ..++|.+++|+| ++..+|+ |..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence 346889999998775431 2355555522 233334432 345799999999 7776544 44677999
Q ss_pred EEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCcccccceEEEecCCCccccCCceEEEEcc
Q 001776 911 IYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL 987 (1015)
Q Consensus 911 vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d---g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1015)
+||++ ++.+..+. ...+..+.|||+|++|++++.+ |.|.+||+.+.+. +.... + ..++.++|||
T Consensus 87 lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~-----i~~~~-~----~~~t~~~WsP 153 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK-----ISTFE-H----SDATDVEWSP 153 (194)
T ss_pred EEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE-----eeccc-c----CcEEEEEEcC
Confidence 99997 66666664 4677899999999999998754 5699999997552 22222 2 2378999999
Q ss_pred CCCEEEEE-------eCCeEEEEEcCCceEecc
Q 001776 988 DQTHLLAV-------HETQIAIYEAPKLECLKQ 1013 (1015)
Q Consensus 988 dg~~l~~~-------~d~~i~vwd~~~g~~l~~ 1013 (1015)
||++|+++ .|+.+.||+. +|+++..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence 99999994 3889999999 6877754
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-11 Score=136.70 Aligned_cols=224 Identities=17% Similarity=0.188 Sum_probs=143.9
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEecC--CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
...+...+.+.+|||||+.++++...+ ..|.+||+.+++... +....+.+.+.+||||
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSPD 250 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECCC
Confidence 345778899999999999665554333 469999999887543 2223345678999999
Q ss_pred CCEEEE-EECCCeEEEEEc--cCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCeEEEEEc--CCCceEEEe
Q 001776 430 GTLFGV-AYSKHIVHLYTY--HGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDA--VTGTKQYIF 503 (1015)
Q Consensus 430 g~~las-~~~dg~v~iwd~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~v~vwd~--~~~~~~~~~ 503 (1015)
|+.|+. .+.+|...||.+ .++. .. .+..+...+....|+|||+ .|+..+ .++...+|.+ .++... .+
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~-~l 323 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQ-RV 323 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceE-EE
Confidence 998875 567777667655 4443 33 3455666667789999999 455444 4556666654 444432 22
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCCC---eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
..+........|+| +|++|+..+.++ .|.+||+.++....... ........|+|||+.|+..+.++ +...+.
T Consensus 324 t~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~l~ 398 (427)
T PRK02889 324 TFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSVLA 398 (427)
T ss_pred ecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEEEE
Confidence 22222233456654 557887766554 69999998765443322 23346789999999999988654 345677
Q ss_pred EEeCCCCeeeEEeeCCCCCCeEEEEEeCC
Q 001776 581 EWNESEGAVKRTYHGLGKRSVGVVQFDTT 609 (1015)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~v~~~~~ 609 (1015)
+.+. ++.....+..+.. .+...+|+|-
T Consensus 399 ~~~~-~g~~~~~l~~~~g-~~~~p~wsp~ 425 (427)
T PRK02889 399 AVSS-DGRIKQRLSVQGG-DVREPSWGPF 425 (427)
T ss_pred EEEC-CCCceEEeecCCC-CCCCCccCCC
Confidence 7777 4555555544333 4556677663
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.3e-10 Score=121.01 Aligned_cols=294 Identities=13% Similarity=0.164 Sum_probs=176.1
Q ss_pred EEEEeeCCCCCceEEEEeC--CCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeC----CCcEEEEeCCCC--ce--eEE
Q 001776 566 LFSCGTNKEGESYLVEWNE--SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD----EFMIKFWDMDNV--NL--LAS 635 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~--~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~----dg~i~vwd~~~~--~~--~~~ 635 (1015)
+++++........|++|++ .++++...-..........++++|++++|++..+ +|.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444443222344666665 5665543222212224566899999999999886 568988887764 33 233
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEe-CCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccccc
Q 001776 636 IDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714 (1015)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1015)
.... ......++++|++++|+++. .+|.+.++++.....+......
T Consensus 82 ~~~~--g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~------------------------------- 128 (345)
T PF10282_consen 82 VPSG--GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQT------------------------------- 128 (345)
T ss_dssp EEES--SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEE-------------------------------
T ss_pred eccC--CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeee-------------------------------
Confidence 3221 22345789999999999887 5889999999764232222110
Q ss_pred ccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEe
Q 001776 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (1015)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~ 794 (1015)
+..... -..+.........++.++|||+++++.
T Consensus 129 ---------------------------------------~~~~g~--------g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 129 ---------------------------------------VRHEGS--------GPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp ---------------------------------------EESEEE--------ESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred ---------------------------------------cccCCC--------CCcccccccccceeEEECCCCCEEEEE
Confidence 000000 000001133556789999999988876
Q ss_pred cc-CcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc--CCeEEEEeC
Q 001776 795 AS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNM 871 (1015)
Q Consensus 795 ~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~ 871 (1015)
.. ...|.+|++...... +.. .....++ .....+.++|+||++++.+.. +++|.++++
T Consensus 162 dlG~D~v~~~~~~~~~~~----l~~-------------~~~~~~~---~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~ 221 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGK----LTP-------------VDSIKVP---PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDY 221 (345)
T ss_dssp ETTTTEEEEEEE-TTS-T----EEE-------------EEEEECS---TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEEEeCCCce----EEE-------------eeccccc---cCCCCcEEEEcCCcCEEEEecCCCCcEEEEee
Confidence 54 357888876532100 000 0000111 456788999999999988776 789999998
Q ss_pred C--CCc--eeEEeCC----CC--CCeeEEEEcCCCCcEEEEEE-cCCeEEEEEcc--cc--eEEEEEcCccCCeEEEEEe
Q 001776 872 M--TFK--TMTTFMP----PP--PAATFLAFHPQDNNIIAIGM-EDSSIQIYNVR--VD--EVKTKLKGHQKRITGLAFS 936 (1015)
Q Consensus 872 ~--~~~--~~~~l~~----~~--~~i~~l~~sp~d~~~la~g~-~dg~v~vwd~~--~~--~~~~~l~~h~~~v~~l~~s 936 (1015)
. ++. .+..+.. .. .....|+++| ||++|.++. .++.|.+|+++ ++ +.+..+.......+.++++
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 8 443 2222221 11 2578899999 888877665 56689999993 33 3344444334458899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEcc--Ccc
Q 001776 937 NTLNVLVSSG-ADSQLCVWSTD--GWE 960 (1015)
Q Consensus 937 pdg~~l~s~s-~dg~v~vWd~~--~~~ 960 (1015)
|+|++|+++. .++.|.+|+++ +|.
T Consensus 301 ~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 301 PDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 9999998877 45689999774 554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-11 Score=124.81 Aligned_cols=314 Identities=11% Similarity=0.166 Sum_probs=203.4
Q ss_pred eeeeCCCCCCCccccCCCC------CceeEEEeccCCCeeEEEeccCCCeEEEEEec-----------CCeEEEEEcCCc
Q 001776 327 PVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN-----------MGDVMLWEVGSR 389 (1015)
Q Consensus 327 ~~~~s~~g~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~-----------dg~v~iwd~~~~ 389 (1015)
-+.|||.|++|++....+. .-..++.+.|. .|.-+.|||+.+ +|+|=+. ...++|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHP-GVQFIDFSPNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccCC-CceeeecCCccc-eEEEecCCccccCcccCCCceEEEEEcccc
Confidence 4679999999888765543 12334444454 689999999999 4565331 146999999999
Q ss_pred ceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEE
Q 001776 390 ERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDL 469 (1015)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~ 469 (1015)
...+..++ +.+....-.-+.||.|++++|.-..++ |.||+..+-..+... .+ .-..|...
T Consensus 293 ~lkrsF~~----------------~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~K-sl--ki~gIr~F 352 (698)
T KOG2314|consen 293 LLKRSFPV----------------IKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKK-SL--KISGIRDF 352 (698)
T ss_pred chhcceec----------------cCCCccccceEEeccCCceeEEeccce-EEEEecCceeeeccc-cc--CCccccCc
Confidence 87765322 112222233478999999999887754 999987663222110 11 23468888
Q ss_pred EEecCCCceEEEEEeC-----CCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe----------CCCeEE
Q 001776 470 AFSYPNKQLSVVTCGE-----DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA----------TDGKIK 534 (1015)
Q Consensus 470 ~~s~~~~~~~l~s~s~-----dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------~dg~i~ 534 (1015)
.|+|.+. +||.-.. -..+.+-.+.+++.+++-.-|. |..+..+...+|.+|+.-- .-..+.
T Consensus 353 swsP~~~--llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 353 SWSPTSN--LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCCCcc--eEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 9999988 5654332 1256677777777776654443 5556666677777776421 112355
Q ss_pred EEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC-C---eeeEEeeCCCCCCeEEEEEeCCC
Q 001776 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE-G---AVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 535 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~-~---~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
|+.++..........-...|...+|-|.|+.+++.+.+ +....+.+|.+++ . +.+..+.. ...+.+.|+|.|
T Consensus 429 IfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~-~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG 504 (698)
T KOG2314|consen 429 IFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN-TVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKG 504 (698)
T ss_pred EEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc-ccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCC
Confidence 66666555444443445578899999999998877654 3356788888773 2 23333333 256789999999
Q ss_pred CEEEEEe---CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC------CcEEEEEcc
Q 001776 611 NRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------NGIKILANA 672 (1015)
Q Consensus 611 ~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iw~~~ 672 (1015)
++++.+. ..|.+.++|........+-. ..| ...+.+.|.|.|+++++++.- .--++|+..
T Consensus 505 ~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 505 RFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cEEEEEEecccccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 9998875 57899999987533322211 122 245789999999999998753 345566554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-10 Score=119.28 Aligned_cols=354 Identities=13% Similarity=0.143 Sum_probs=212.8
Q ss_pred EEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEE
Q 001776 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFL 614 (1015)
Q Consensus 535 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~ 614 (1015)
+|+..+......+....-++..+++||.|.+|++....+ |.+|+...+..+..+... .|..+.|+|.+++|.
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-----V~~~~g~~~~~l~~~~~~---~V~~~~fSP~~kYL~ 87 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-----VECWGGPSKAKLVRFRHP---DVKYLDFSPNEKYLV 87 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhccc-----eEEccccchhheeeeecC---CceecccCcccceee
Confidence 454444333334444555788999999999999876543 999998877655555432 578899999999999
Q ss_pred EEeCCC---------------cEEEEeCCCCceeEEEecCCCCCCcc-eEEEcCCCCEEEEEeCCCcEEEEEccCCceee
Q 001776 615 AAGDEF---------------MIKFWDMDNVNLLASIDADGGLQASP-CIRFNKEGILLAVSTNDNGIKILANADGIRLL 678 (1015)
Q Consensus 615 ~~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~ 678 (1015)
+-+..+ .+.+||..+|..+..+.........+ -+.|+-+..++|-. ....++|+++ ++.-.
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~- 164 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE- 164 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc-
Confidence 876433 49999999999999887653322234 78889888777654 3457899987 33111
Q ss_pred eeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeecc
Q 001776 679 RTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTE 758 (1015)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~ 758 (1015)
.+... ..++.|-....++|..... .+..|.+. ..+..+++++|.+..
T Consensus 165 ----~~p~~-------------~lr~~gi~dFsisP~~n~~-----~la~~tPE-----------k~~kpa~~~i~sIp~ 211 (561)
T COG5354 165 ----EHPFK-------------NLRPVGILDFSISPEGNHD-----ELAYWTPE-----------KLNKPAMVRILSIPK 211 (561)
T ss_pred ----cCchh-------------hccccceeeEEecCCCCCc-----eEEEEccc-----------cCCCCcEEEEEEccC
Confidence 11110 1111111111122221000 01112111 233446677777662
Q ss_pred ccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCC
Q 001776 759 ITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDIS 838 (1015)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~ 838 (1015)
.........+. ..-..+.|.+.|+++++-..-.+ ......-...++.+++.....+.. .+
T Consensus 212 ~s~l~tk~lfk-------~~~~qLkW~~~g~~ll~l~~t~~-----------ksnKsyfgesnLyl~~~~e~~i~V-~~- 271 (561)
T COG5354 212 NSVLVTKNLFK-------VSGVQLKWQVLGKYLLVLVMTHT-----------KSNKSYFGESNLYLLRITERSIPV-EK- 271 (561)
T ss_pred CCeeeeeeeEe-------ecccEEEEecCCceEEEEEEEee-----------ecccceeccceEEEEeecccccce-ec-
Confidence 21111111111 11235677888887765432110 001111122234444444222111 11
Q ss_pred CCCCCCCccEEEEccCCCEEEEEc---CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC---CeEEEE
Q 001776 839 DTNPEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIY 912 (1015)
Q Consensus 839 ~~~~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d---g~v~vw 912 (1015)
...++|...+|.|+++.+++.+ +.++.++|++.. .. +......-+.+.|+| .+++++.++-| |.|.+|
T Consensus 272 --~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 272 --DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred --cccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccccceEEe
Confidence 1578999999999999877665 578999998765 33 333455667889999 89999988766 589999
Q ss_pred EcccceE-EEEEcCccCCeEEEEEeCCCCEEEEEe------CCCcEEEEEccCcc
Q 001776 913 NVRVDEV-KTKLKGHQKRITGLAFSNTLNVLVSSG------ADSQLCVWSTDGWE 960 (1015)
Q Consensus 913 d~~~~~~-~~~l~~h~~~v~~l~~spdg~~l~s~s------~dg~v~vWd~~~~~ 960 (1015)
|..+.-. +..+.+-. ..-+.||||+.++.+.. .|..|.|||+...+
T Consensus 346 ~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 346 DPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 9886543 33666543 35578999999987754 37889999998744
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=130.35 Aligned_cols=218 Identities=11% Similarity=0.105 Sum_probs=148.3
Q ss_pred CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe---CCCeEEEEEcCCCceEEEeeCCCCCEEEEeec
Q 001776 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~ 516 (1015)
..|.+||.++.. .+ .+..|...+.+.+|+|||+ .|+..+ .+..|++||+.+++.. .+..+.+.+...+|+
T Consensus 182 ~~l~~~d~dg~~-~~---~lt~~~~~v~~p~wSpDG~--~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGAN-VR---YLTDGSSLVLTPRFSPNRQ--EITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCC-cE---EEecCCCCeEeeEECCCCC--EEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC
Confidence 368888886543 33 4667888999999999999 555554 3468999999888653 444566667777786
Q ss_pred ccCCccEE-EEEeCCCe--EEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEe
Q 001776 517 HKENIQFI-FSTATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY 593 (1015)
Q Consensus 517 ~~~~~~~l-~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~ 593 (1015)
|++ +.| ++.+.++. |.+||+.++.. ..+..+........|+|||+.++..+. ..+...|+++|..++......
T Consensus 255 PDG--~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~-~~g~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 255 PDG--RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD-RSGSPQLYVMNADGSNPRRIS 330 (435)
T ss_pred CCC--CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC-CCCCCeEEEEECCCCCeEEee
Confidence 654 555 46666665 77778776544 334444445667899999999988763 344567999998776554433
Q ss_pred eCCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC------C
Q 001776 594 HGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND------N 664 (1015)
Q Consensus 594 ~~~~~~~i~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g 664 (1015)
. ... .+....|+|+|+.|+..+.+ ..|.+||+.++.. ..+... ..+....|+|||+.|+..+.+ .
T Consensus 331 ~-~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 331 F-GGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred c-CCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 2 222 45567899999999887643 3688899865543 333321 246788999999998876543 2
Q ss_pred cEEEEEccCC
Q 001776 665 GIKILANADG 674 (1015)
Q Consensus 665 ~i~iw~~~~~ 674 (1015)
.++++++..+
T Consensus 405 ~L~~~dl~g~ 414 (435)
T PRK05137 405 KLYTVDLTGR 414 (435)
T ss_pred eEEEEECCCC
Confidence 5777777554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-09 Score=105.73 Aligned_cols=300 Identities=12% Similarity=0.152 Sum_probs=188.2
Q ss_pred CCeEEEEeCCCCCcee---eecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE--EEeCCCCeeeEEe--eCCCCCCeE
Q 001776 530 DGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV--EWNESEGAVKRTY--HGLGKRSVG 602 (1015)
Q Consensus 530 dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~--iwd~~~~~~~~~~--~~~~~~~i~ 602 (1015)
+.-|++|++++..... .........+-++|+|++++|+++..+++ .+.|. -||..+|++...- ..... +.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-~ggvaay~iD~~~G~Lt~ln~~~~~g~-~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-EGGVAAYRIDPDDGRLTFLNRQTLPGS-PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-cCcEEEEEEcCCCCeEEEeeccccCCC-CCe
Confidence 4669999998543322 22334457788999999999999887633 33344 4555556554322 22222 337
Q ss_pred EEEEeCCCCEEEEEe-CCCcEEEEeCCC-CceeEE---EecCCC-------CCCcceEEEcCCCCEEEEEe-CCCcEEEE
Q 001776 603 VVQFDTTKNRFLAAG-DEFMIKFWDMDN-VNLLAS---IDADGG-------LQASPCIRFNKEGILLAVST-NDNGIKIL 669 (1015)
Q Consensus 603 ~v~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~---~~~~~~-------~~~v~~v~~s~~~~~l~~~~-~dg~i~iw 669 (1015)
.+++++++++++++. ..|.|.++-+.. |.+... +...+. ...+....++|++++|++.. ..-.|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 799999999999998 678999999865 443332 221111 12277899999999998876 22378899
Q ss_pred EccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccccc
Q 001776 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (1015)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 749 (1015)
++..|. +...-..
T Consensus 173 ~~~dg~-L~~~~~~------------------------------------------------------------------ 185 (346)
T COG2706 173 DLDDGK-LTPADPA------------------------------------------------------------------ 185 (346)
T ss_pred EcccCc-ccccccc------------------------------------------------------------------
Confidence 887661 1100000
Q ss_pred ceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEecc-CcEEEEeeccccCCCCCCceecccCceecCCC
Q 001776 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALAS-NAVHKLWKWPRNERNSTGKATTNQAPQLWQPP 828 (1015)
Q Consensus 750 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~ 828 (1015)
. + .....-+.++|+|++++.....+ +++|.+|.+... .++. -.++
T Consensus 186 -----~--------------v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~----~g~~--------~~lQ 231 (346)
T COG2706 186 -----E--------------V---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA----VGKF--------EELQ 231 (346)
T ss_pred -----c--------------c---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----CceE--------EEee
Confidence 0 0 02344578999999998887776 899999987642 1111 1111
Q ss_pred CCccccccCCCCCCCCCccEEEEccCCCEEEEEc--CCeEEEEeCCCC-ceeE---EeCCCCCCeeEEEEcCCCCcEEEE
Q 001776 829 SGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS--GGKISLFNMMTF-KTMT---TFMPPPPAATFLAFHPQDNNIIAI 902 (1015)
Q Consensus 829 ~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~-~~~~---~l~~~~~~i~~l~~sp~d~~~la~ 902 (1015)
+-..+...+.+ .....++.+++||++|.++. .+.|.+|.+... ..+. ....+...-....|++ ++++|++
T Consensus 232 ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Lia 307 (346)
T COG2706 232 TIDTLPEDFTG---TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIA 307 (346)
T ss_pred eeccCccccCC---CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEE
Confidence 11222223433 56678899999999999987 467888877542 2222 2223334467889999 8889888
Q ss_pred EEcCC-eEEEEEcc--cceEEEEEc-CccCCeEEEEEe
Q 001776 903 GMEDS-SIQIYNVR--VDEVKTKLK-GHQKRITGLAFS 936 (1015)
Q Consensus 903 g~~dg-~v~vwd~~--~~~~~~~l~-~h~~~v~~l~~s 936 (1015)
+..++ +|.+|.++ +|++-.... .......||.|.
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 87665 78888765 555433322 233445566664
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=119.06 Aligned_cols=111 Identities=18% Similarity=0.328 Sum_probs=91.6
Q ss_pred CCCCccEEEEccCCCEEEEEc---CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC---CeEEEEEcc
Q 001776 842 PEDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVR 915 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d---g~v~vwd~~ 915 (1015)
..++|.+++|+|+|+.+|+.. +..|.+||++ ++.+..+. ...++.+.|+| +|++|++|+.+ |.|.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECC
Confidence 345799999999999876653 5789999996 66666664 46788999999 99999998744 679999999
Q ss_pred cceEEEEEcCccCCeEEEEEeCCCCEEEEEeC------CCcEEEEEccC
Q 001776 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGA------DSQLCVWSTDG 958 (1015)
Q Consensus 916 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~------dg~v~vWd~~~ 958 (1015)
+.+.+.... |. .++.++|||||+++++++. |+.++||+..+
T Consensus 134 ~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 134 KKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 998888775 43 3789999999999999874 78899999975
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-09 Score=120.15 Aligned_cols=200 Identities=16% Similarity=0.168 Sum_probs=155.5
Q ss_pred CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCE--EEEeecccCCccEEEEEeCCCeEEEEeCCCC
Q 001776 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV--YSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (1015)
Q Consensus 464 ~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 541 (1015)
..|....+..+.+ .++.++.++.+.+||...+............. .++-+-...+.-++++|+.-+.|.+|+....
T Consensus 88 ~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 88 DWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred ccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc
Confidence 3444456666666 68888899999999998887776665322211 1122222333368899999999999999855
Q ss_pred CceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeE-EeeCCCCCCeEEEEEeCCCCEEEEEeCCC
Q 001776 542 GSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR-TYHGLGKRSVGVVQFDTTKNRFLAAGDEF 620 (1015)
Q Consensus 542 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~-~~~~~~~~~i~~v~~~~~~~~l~~~~~dg 620 (1015)
.....+.+|.+.|.++.++.||+++++++.|+ .+++|++.+.+... ..-+|.. .+..++|.|+ .+++++.|-
T Consensus 166 n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDR----siRlW~i~s~~~~~~~~fgHsa-Rvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDR----SIRLWPIDSREVLGCTGFGHSA-RVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred CCcceecccCCceEEEEEccCCcEEEEEecCc----ceeeeecccccccCcccccccc-eeEEEEeccc--eeEEeccce
Confidence 55556889999999999999999999999866 59999999988776 5556665 7888999988 999999999
Q ss_pred cEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 621 ~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+.++|+.. +..+..+..|.. ..+..++..++...+++++.|+.+++|+....
T Consensus 239 tcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 239 TCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999764 455556666543 46889999999999999999999999998653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.3e-09 Score=113.18 Aligned_cols=273 Identities=13% Similarity=0.190 Sum_probs=176.0
Q ss_pred EEEecC----CeEEEEEc--CCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC----CCeE
Q 001776 373 VVGTNM----GDVMLWEV--GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----KHIV 442 (1015)
Q Consensus 373 a~g~~d----g~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----dg~v 442 (1015)
++|+.. +.|.+|++ .+++......+ .-......++++|++++|.++.. ++.|
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~------------------~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v 64 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTV------------------AEGENPSWLAVSPDGRRLYVVNEGSGDSGGV 64 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEE------------------EESSSECCEEE-TTSSEEEEEETTSSTTTEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeee------------------cCCCCCceEEEEeCCCEEEEEEccccCCCCE
Confidence 455554 68888888 44544332111 13356677999999999999877 5689
Q ss_pred EEEEccCC-ceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCeEEEEEcCC-CceEEE---ee----------CC
Q 001776 443 HLYTYHGG-DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVT-GTKQYI---FE----------GH 506 (1015)
Q Consensus 443 ~iwd~~~~-~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~v~vwd~~~-~~~~~~---~~----------~h 506 (1015)
..|++... ..+...............++++|+++ +++++. .+|+|.++++.. |..... +. ..
T Consensus 65 ~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 65 SSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred EEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 99998874 33443334443445567899999999 555554 689999999987 443322 21 11
Q ss_pred CCCEEEEeecccCCccEEEEEe-CCCeEEEEeCCCCCcee----e-ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 507 ESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGSRV----D-YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~----~-~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
.....++.++|++ +++++.. ....|.+|+++...... . ....+..-+.++|+|+++++++... ..+.|.
T Consensus 143 ~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e---~s~~v~ 217 (345)
T PF10282_consen 143 GPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE---LSNTVS 217 (345)
T ss_dssp STCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---TTTEEE
T ss_pred cccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---CCCcEE
Confidence 2446778776544 6666654 34579999998765211 1 2234557889999999999988763 355688
Q ss_pred EEeCC--CCe--eeEEeeCC----CC-CCeEEEEEeCCCCEEEEEe-CCCcEEEEeCC--CCce--eEEEecCCCCCCcc
Q 001776 581 EWNES--EGA--VKRTYHGL----GK-RSVGVVQFDTTKNRFLAAG-DEFMIKFWDMD--NVNL--LASIDADGGLQASP 646 (1015)
Q Consensus 581 iwd~~--~~~--~~~~~~~~----~~-~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~--~~~~--~~~~~~~~~~~~v~ 646 (1015)
++++. ++. .+..+... .. .....++++|||++++++. .++.|.+|++. ++++ +..+... .....
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--G~~Pr 295 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--GKFPR 295 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES--SSSEE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC--CCCcc
Confidence 88776 443 22232221 11 1467899999999998877 67789999983 3433 3333322 23468
Q ss_pred eEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 001776 647 CIRFNKEGILLAVST-NDNGIKILANA 672 (1015)
Q Consensus 647 ~v~~s~~~~~l~~~~-~dg~i~iw~~~ 672 (1015)
.++++|+|++|+++. .++.|.+|++.
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999999999887 66789999774
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-09 Score=110.17 Aligned_cols=95 Identities=12% Similarity=0.039 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeC----------CCcEEEEeCCCCceeEEEecCCC-----
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD----------EFMIKFWDMDNVNLLASIDADGG----- 641 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~----- 641 (1015)
+.|.+.|..+++.+..+....... .+ ++||++.++++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 569999999999998888665422 24 9999998888765 78999999999999988875322
Q ss_pred CCCcceEEEcCCCCEEEEEe-C-CCcEEEEEccCC
Q 001776 642 LQASPCIRFNKEGILLAVST-N-DNGIKILANADG 674 (1015)
Q Consensus 642 ~~~v~~v~~s~~~~~l~~~~-~-dg~i~iw~~~~~ 674 (1015)
......++++|||++|++.. . +..+.+.|+.++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 11234789999999988766 4 689999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-11 Score=119.32 Aligned_cols=245 Identities=9% Similarity=0.121 Sum_probs=180.5
Q ss_pred CCCCEEEEEEccCCC--EEEEEECCCeEEEEEccCCceeeee---eEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 417 YTASVNRVMWSPDGT--LFGVAYSKHIVHLYTYHGGDELRNH---LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 417 h~~~V~~l~~spdg~--~las~~~dg~v~iwd~~~~~~~~~~---~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
....|+.++|.-|++ .+..++.+..+..+++......... .......++|..++.. |+ .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888887654 4444446666777777665543321 1233456677777765 44 5899999999999
Q ss_pred EEcCCCc----eEEEeeCCCCCEEEEeecccCCccEEEEEeCC--CeEEEEeCCCCCceeeecCCC---------CceEE
Q 001776 492 WDAVTGT----KQYIFEGHESPVYSICPHHKENIQFIFSTATD--GKIKAWLYDNLGSRVDYDAPG---------HSSTM 556 (1015)
Q Consensus 492 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~---------~~i~~ 556 (1015)
|..+.+. .+..+..+ .++..+.-++... .++++|+.. ..+.+||+.....+..-.... -++++
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988443 33344433 3455555443332 577779998 889999999875544322211 16788
Q ss_pred EEECCC--CCEEEEEeeCCCCCceEEEEeCCCC-eeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001776 557 MAYSAD--GARLFSCGTNKEGESYLVEWNESEG-AVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 557 ~~~s~~--~~~l~~~~~d~~~~~~i~iwd~~~~-~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 633 (1015)
+.|-+. ...|++++. -..+++||.+.+ +++..+..... +++++...|+++++++|..-|.+..||.+.++..
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~-~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLEN-PISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccC-cceeeeecCCCcEEEEecccchhheecccCceee
Confidence 899887 888998875 446999999876 56677766655 8999999999999999999999999999999888
Q ss_pred EE-EecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 634 AS-IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 634 ~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.. +.+. .+.+.++..+|.++++++++-|..+||+|+.+.
T Consensus 283 g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 5544 568999999999999999999999999999985
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.8e-10 Score=126.82 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=142.1
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCe--
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 488 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~-- 488 (1015)
+..+...+.+.+|||||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 34566789999999999999887543 258888998876422 2222334457899999995 3344566664
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCCe--EEEEeCCCCCceeeecCCCCceEEEEECCCCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|++||+.+++. ..+..+.......+|++++ +.++..+ .++. |.++|+.+++... +..........+|+|||++
T Consensus 288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 288 IYVVDIATKAL-TRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred EEEEECCCCCe-EECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCE
Confidence 77888877764 3444455555667776544 5665544 3444 5566666554332 2223333445789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeC-CC--cEEEEeCCCCceeEEEecCCCC
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-EF--MIKFWDMDNVNLLASIDADGGL 642 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~ 642 (1015)
++..+... +...|.++|+.++......... ......|+|+|+.++..+. +| .+++++. +|.....+... .
T Consensus 364 l~~~~~~~-g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~ 436 (448)
T PRK04792 364 MIMVNRTN-GKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--Q 436 (448)
T ss_pred EEEEEecC-CceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--C
Confidence 98876542 3446888898887654322221 1123479999998887663 33 3777787 55556666543 3
Q ss_pred CCcceEEEcC
Q 001776 643 QASPCIRFNK 652 (1015)
Q Consensus 643 ~~v~~v~~s~ 652 (1015)
..+...+|+|
T Consensus 437 g~~~~p~Wsp 446 (448)
T PRK04792 437 GEVKSPAWSP 446 (448)
T ss_pred CCcCCCccCC
Confidence 3566778876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-10 Score=119.82 Aligned_cols=292 Identities=14% Similarity=0.160 Sum_probs=195.3
Q ss_pred CCCCEEEEeecccCCccEE-EEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 506 HESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
+....+.|..+++ |+++ ++|..--.|++||+.+....+........|.-.-++.|-..++....|+ +|.+..
T Consensus 50 ~p~ast~ik~s~D--GqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR----~IefHa- 122 (703)
T KOG2321|consen 50 MPTASTRIKVSPD--GQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDR----TIEFHA- 122 (703)
T ss_pred CccccceeEecCC--CcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCc----eeeehh-
Confidence 5556667777554 4665 5666778899999987666555444444555555565555444443332 343322
Q ss_pred CCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC
Q 001776 585 SEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 585 ~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
..|.... +.-.. .-..++++.-..-|++++....|+-+++..|..+..+... ...+++|..++...+|++|+.+|
T Consensus 123 k~G~hy~-~RIP~--~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~--~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 123 KYGRHYR-TRIPK--FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD--SGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred hcCeeee-eecCc--CCccccccCCCccEEEeecCcceEEEEccccccccccccc--cccceeeeecCccceEEecccCc
Confidence 1221111 11111 2344666655555666666678999999999999888765 56899999999999999999999
Q ss_pred cEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccc
Q 001776 665 GIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIA 744 (1015)
Q Consensus 665 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 744 (1015)
.+..||..+. ..+..+..... +.
T Consensus 198 ~VEfwDpR~k-srv~~l~~~~~-v~------------------------------------------------------- 220 (703)
T KOG2321|consen 198 VVEFWDPRDK-SRVGTLDAASS-VN------------------------------------------------------- 220 (703)
T ss_pred eEEEecchhh-hhheeeecccc-cC-------------------------------------------------------
Confidence 9999999876 23322221110 00
Q ss_pred cccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCcee
Q 001776 745 DEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQL 824 (1015)
Q Consensus 745 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 824 (1015)
..+.......|+++.|+.+|-.+++|+.+|.+.|||+....
T Consensus 221 ------------------------s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--------------- 261 (703)
T KOG2321|consen 221 ------------------------SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--------------- 261 (703)
T ss_pred ------------------------CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC---------------
Confidence 00001133568999999999999999999999999875432
Q ss_pred cCCCCCccccccCCCCCCCCCccEEEEccC--CCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEE
Q 001776 825 WQPPSGILMTNDISDTNPEDAVPCFALSKN--DSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAI 902 (1015)
Q Consensus 825 ~d~~~~~~~~~~l~~~~~~~~v~~l~~s~d--g~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~ 902 (1015)
++. .+..+..-+|..+.|-+. +..+++.....++|||-.+|+....+. ....++.+++-| ++.++++
T Consensus 262 -------pl~--~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p-~sGm~f~ 330 (703)
T KOG2321|consen 262 -------PLL--VKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVP-GSGMFFT 330 (703)
T ss_pred -------cee--ecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeec-CCceEEE
Confidence 111 112224567888888765 456666667889999999999988877 455599999999 7889999
Q ss_pred EEcCCeEEEEEccc
Q 001776 903 GMEDSSIQIYNVRV 916 (1015)
Q Consensus 903 g~~dg~v~vwd~~~ 916 (1015)
|-++..+..|=+..
T Consensus 331 Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 331 ANESSKMHTYYIPS 344 (703)
T ss_pred ecCCCcceeEEccc
Confidence 98888777776654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-10 Score=115.83 Aligned_cols=334 Identities=13% Similarity=0.151 Sum_probs=193.4
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
-.-+.+.|||-|.||++-...| |.+|--.+-..++ .+ .|. .|.-+.|||..+ ||+|-+..-...=|+
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~----- 277 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEED----- 277 (698)
T ss_pred ceeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcc-----
Confidence 3557899999999999998888 8999755544333 22 254 388899999999 888876432211111
Q ss_pred eEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC--c-eEEEEECCCCCEEEEEeeCCCC
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--S-STMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~-i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
+.+ ...++|||+.++.....+..... . -.-..||.|+++++....+
T Consensus 278 -------------------d~e---------~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~--- 326 (698)
T KOG2314|consen 278 -------------------DNE---------GQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN--- 326 (698)
T ss_pred -------------------cCC---------CceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc---
Confidence 000 12233444444443333322111 1 1235789999999987654
Q ss_pred CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCceeEEEecCCCCCCcceEEE
Q 001776 576 ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD-----EFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
.|.+|+..+..++..-...- ..|....|+|.++.|+.-.. -..+.+-.+.+++.+.+...+. -.=..+-|
T Consensus 327 --sisIyEtpsf~lld~Kslki-~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhW 401 (698)
T KOG2314|consen 327 --SISIYETPSFMLLDKKSLKI-SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHW 401 (698)
T ss_pred --eEEEEecCceeeecccccCC-ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEe
Confidence 39999877644432222222 26777899999888876552 1245666666666666554431 11124556
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCC
Q 001776 651 NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMS 730 (1015)
Q Consensus 651 s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1015)
-.+|.+|+.--+- .... .
T Consensus 402 Qk~gdyLcvkvdR-------~tK~-~------------------------------------------------------ 419 (698)
T KOG2314|consen 402 QKSGDYLCVKVDR-------HTKS-K------------------------------------------------------ 419 (698)
T ss_pred ccCCcEEEEEEEe-------eccc-c------------------------------------------------------
Confidence 6677777643210 0000 0
Q ss_pred CCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccC---cEEEEeeccc
Q 001776 731 NDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPR 807 (1015)
Q Consensus 731 ~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~d---g~i~vw~~~~ 807 (1015)
+.+.-..+.|+.+.....+-.... -...|...+|-|.|..+++-+.+ .++.+|.+..
T Consensus 420 -------------~~g~f~n~eIfrireKdIpve~ve-------lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 420 -------------VKGQFSNLEIFRIREKDIPVEVVE-------LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred -------------ccceEeeEEEEEeeccCCCceeee-------cchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 000001233344333222222111 34678899999999988776654 4555554431
Q ss_pred cCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc----CCeEEEEeCCCCceeEEeCCC
Q 001776 808 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GGKISLFNMMTFKTMTTFMPP 883 (1015)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~~~~~~~l~~~ 883 (1015)
. ...-.++. .+ .......+.|||.|++++.+. .|.+.++|+.-..+..+-...
T Consensus 480 ~------------------~~~~~lVk-~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e 536 (698)
T KOG2314|consen 480 N------------------IKKPSLVK-EL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE 536 (698)
T ss_pred C------------------CCchhhhh-hh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc
Confidence 0 00111111 12 345677899999999998875 578999998753444332223
Q ss_pred CCCeeEEEEcCCCCcEEEEEEcCC
Q 001776 884 PPAATFLAFHPQDNNIIAIGMEDS 907 (1015)
Q Consensus 884 ~~~i~~l~~sp~d~~~la~g~~dg 907 (1015)
....+.+.|.| .|+|+++++.-.
T Consensus 537 h~~at~veWDP-tGRYvvT~ss~w 559 (698)
T KOG2314|consen 537 HFAATEVEWDP-TGRYVVTSSSSW 559 (698)
T ss_pred ccccccceECC-CCCEEEEeeehh
Confidence 34568899999 999999987543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-07 Score=112.54 Aligned_cols=448 Identities=13% Similarity=0.166 Sum_probs=260.2
Q ss_pred CCEEEEEEccCCCEEEEEEC--CC--eEEEEEccCCceeeeeeEEe-----cccCceeEEEEecCCCceEEEEEeCCCeE
Q 001776 419 ASVNRVMWSPDGTLFGVAYS--KH--IVHLYTYHGGDELRNHLEIE-----AHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~--dg--~v~iwd~~~~~~~~~~~~~~-----~h~~~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
..+...+|.+..+.+.++.. .. .|.+..............+. ...+.|.++.|.++.. .++.+..+|.|
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~--~l~~~~~~Gdi 99 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSE--SLCIALASGDI 99 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCC--cEEEEECCceE
Confidence 46777888876655444333 22 23444333322122222332 2456799999999998 67888888999
Q ss_pred EEE----EcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC---------------C--------CC
Q 001776 490 KVW----DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD---------------N--------LG 542 (1015)
Q Consensus 490 ~vw----d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~---------------~--------~~ 542 (1015)
.+. +..+.. +.....-...|.+++|+|+. .+++..+.++++.+.+-+ . ++
T Consensus 100 ~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~--Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGk 176 (928)
T PF04762_consen 100 ILVREDPDPDEDE-IEIVGSVDSGILAASWSPDE--ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGK 176 (928)
T ss_pred EEEEccCCCCCce-eEEEEEEcCcEEEEEECCCc--CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCc
Confidence 988 433332 22222346789999998766 688888888887765310 0 00
Q ss_pred ceeeecC------------------------CCCceEEEEECCCCCEEEEEeeCCC-C-CceEEEEeCCCCeeeEEeeCC
Q 001776 543 SRVDYDA------------------------PGHSSTMMAYSADGARLFSCGTNKE-G-ESYLVEWNESEGAVKRTYHGL 596 (1015)
Q Consensus 543 ~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~d~~-~-~~~i~iwd~~~~~~~~~~~~~ 596 (1015)
....+.+ ....-..++|-.||.++++.+.+.. + ...+++|+-+ |....+-..-
T Consensus 177 KeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v 255 (928)
T PF04762_consen 177 KETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV 255 (928)
T ss_pred ccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC
Confidence 0001100 1123457889999999999886333 2 4789999965 6655444422
Q ss_pred CCCCeEEEEEeCCCCEEEEEeC---CCcEEEEeCCCCceeEEEecC--CCCCCcceEEEcCCCCEEEEEeCCCcEEEEEc
Q 001776 597 GKRSVGVVQFDTTKNRFLAAGD---EFMIKFWDMDNVNLLASIDAD--GGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 597 ~~~~i~~v~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~ 671 (1015)
.+ --..++|-|.|+.|++... ...|.+|.. +|-.-..+... .....|..+.|++|+..||....|. |.+|-.
T Consensus 256 ~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 256 DG-LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred CC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 22 3456899999999998763 445777774 34333333332 2345789999999999999987664 999988
Q ss_pred cCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccce
Q 001776 672 ADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS 751 (1015)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 751 (1015)
.+..-.++..-...
T Consensus 333 ~NYHWYLKqei~~~------------------------------------------------------------------ 346 (928)
T PF04762_consen 333 SNYHWYLKQEIRFS------------------------------------------------------------------ 346 (928)
T ss_pred eCCEEEEEEEEEcc------------------------------------------------------------------
Confidence 76633333221100
Q ss_pred eeeeeccccCCcceeEeccCCCcCCccEEEEEEcCC-CcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCC
Q 001776 752 RIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSG 830 (1015)
Q Consensus 752 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~ 830 (1015)
....+..+.|+|. ...|...+.+|.+..+++. |+...+
T Consensus 347 -----------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s 385 (928)
T PF04762_consen 347 -----------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRS 385 (928)
T ss_pred -----------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEec
Confidence 1111223566663 3345666665666655432 111111
Q ss_pred ccccccCCCCCCCCCccEEEEcc-CCCEEEEEcCCeEEEEeCCCCc-----eeEEeCCCCCCeeEEEEcCCCCcEEEEEE
Q 001776 831 ILMTNDISDTNPEDAVPCFALSK-NDSYVMSASGGKISLFNMMTFK-----TMTTFMPPPPAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 831 ~~~~~~l~~~~~~~~v~~l~~s~-dg~~la~~sdg~i~iwd~~~~~-----~~~~l~~~~~~i~~l~~sp~d~~~la~g~ 904 (1015)
. ..+| |...+++.++.++.+-.+...- ....+. -..+|.+++|++ ++..+|+-.
T Consensus 386 ~------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~ 445 (928)
T PF04762_consen 386 P------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLT 445 (928)
T ss_pred C------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEE
Confidence 0 0112 2223444445567777665432 123333 356899999999 777788899
Q ss_pred cCCeEEEEEcccceEE--------EEEc----------CccCCeEEEEEeCCCCEEEEEeCC---CcEEEEEccCccccc
Q 001776 905 EDSSIQIYNVRVDEVK--------TKLK----------GHQKRITGLAFSNTLNVLVSSGAD---SQLCVWSTDGWEKQA 963 (1015)
Q Consensus 905 ~dg~v~vwd~~~~~~~--------~~l~----------~h~~~v~~l~~spdg~~l~s~s~d---g~v~vWd~~~~~~~~ 963 (1015)
.||.|.+|........ ..+. .....+..++|..+..+++..+.+ ..+.++++...+...
T Consensus 446 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 525 (928)
T PF04762_consen 446 SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA 525 (928)
T ss_pred CCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce
Confidence 9999999986443111 1111 123457888998888777766654 568888885433211
Q ss_pred ceEEEecCCCccccCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001776 964 SKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1015)
Q Consensus 964 ~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~~ 1007 (1015)
......... +.+..+...++...++. ..+|.+...+...
T Consensus 526 -~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 526 -SVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred -eEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 111111111 33555555666553444 6788888666543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-10 Score=113.26 Aligned_cols=253 Identities=13% Similarity=0.223 Sum_probs=171.8
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCc--eeeeeeEEeccc------------CceeEEEEecCCCceEEEE
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT 482 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~--~~~~~~~~~~h~------------~~V~~~~~s~~~~~~~l~s 482 (1015)
..+-|.++.|..+|.+||+|..+|.|.++.-.... .......++.|. ..|..+.|.+++....++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999654321 222333454554 3588999999887667788
Q ss_pred EeCCCeEEEEEcCCCceE-----------------------------------EEe-eCCCCCEEEEeecccCCccEEEE
Q 001776 483 CGEDRVIKVWDAVTGTKQ-----------------------------------YIF-EGHESPVYSICPHHKENIQFIFS 526 (1015)
Q Consensus 483 ~s~dg~v~vwd~~~~~~~-----------------------------------~~~-~~h~~~v~~i~~~~~~~~~~l~s 526 (1015)
.+.|.+|++|.+...... +.+ .+|+.-|+++.++.+. ..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEee
Confidence 889999999987532110 111 2577788888876543 55555
Q ss_pred EeCCCeEEEEeCCCCCceee---ecCCC-----CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeee----EEee
Q 001776 527 TATDGKIKAWLYDNLGSRVD---YDAPG-----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK----RTYH 594 (1015)
Q Consensus 527 ~~~dg~i~vwd~~~~~~~~~---~~~~~-----~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~----~~~~ 594 (1015)
+.|-.|.+|++.-...... ...+. .-|++..|+|..-.++.-+. ..+.|++-|++...+. +.+.
T Consensus 182 -ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 182 -ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred -ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCCcEEEeechhhhhhcchhhhhc
Confidence 4678899999875544332 22221 15788899996544433332 2456999999854321 1111
Q ss_pred CCCC-----------CCeEEEEEeCCCCEEEEEeCCCcEEEEeC-CCCceeEEEecCCC----------CCCc---ceEE
Q 001776 595 GLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDM-DNVNLLASIDADGG----------LQAS---PCIR 649 (1015)
Q Consensus 595 ~~~~-----------~~i~~v~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~----------~~~v---~~v~ 649 (1015)
...+ ..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.. .+.| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1111 25778999999999998764 58999999 45667777665431 1112 3688
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCce
Q 001776 650 FNKEGILLAVSTNDNGIKILANADGIR 676 (1015)
Q Consensus 650 ~s~~~~~l~~~~~dg~i~iw~~~~~~~ 676 (1015)
|+.++..+++|+..+.+++++...|..
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCcc
Confidence 999999999999999999999877643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-10 Score=125.13 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=142.6
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC--e
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 488 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg--~ 488 (1015)
+..+...+...+|||||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 34567789999999999999887644 368999999876432 3333445567899999994 233555555 6
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCC--eEEEEeCCCCCceeeecCCCCceEEEEECCCCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|++||+.+++.. .+..+........|+++ |+.++..+ .+| .|+++++.+++... +...........|+|+|+.
T Consensus 269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~ 344 (430)
T PRK00178 269 IYVMDLASRQLS-RVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKT 344 (430)
T ss_pred EEEEECCCCCeE-EcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 888898887654 45545555555667654 45565544 344 47777776655332 2222333446789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEEecCCCC
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGL 642 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~ 642 (1015)
++...... +...|.+||+.++.......... .....|+|+|+.++..+.+ ..|+++++.. .....+... .
T Consensus 345 i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~--~ 417 (430)
T PRK00178 345 LVMVHRQD-GNFHVAAQDLQRGSVRILTDTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTA--Q 417 (430)
T ss_pred EEEEEccC-CceEEEEEECCCCCEEEccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCC--C
Confidence 98876532 34468999998876543322211 2245899999999887643 3577777753 333444432 3
Q ss_pred CCcceEEEcC
Q 001776 643 QASPCIRFNK 652 (1015)
Q Consensus 643 ~~v~~v~~s~ 652 (1015)
..+...+|+|
T Consensus 418 g~~~~p~ws~ 427 (430)
T PRK00178 418 GEVREPSWSP 427 (430)
T ss_pred CCcCCCccCC
Confidence 3456677776
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-10 Score=110.86 Aligned_cols=329 Identities=11% Similarity=0.158 Sum_probs=196.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCc-----eeEEEecCCC----------CCCcceEEEcCCC--CEEEEEeC
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN-----LLASIDADGG----------LQASPCIRFNKEG--ILLAVSTN 662 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~~~v~~v~~s~~~--~~l~~~~~ 662 (1015)
.+.++.|...|.+|++|..+|.|.++...... ....++.|.. ...|+.+.|.+++ ..+...+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 68889999999999999999999999754322 2222322211 2457889999865 46677889
Q ss_pred CCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccc
Q 001776 663 DNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPK 742 (1015)
Q Consensus 663 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 742 (1015)
|.+|++|.+....... .+...... + +......+ +..
T Consensus 107 dktiKlWKi~er~~k~---~~~~~~~~----------------~---------------~~~~~~~l----------r~p 142 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKK---EGYNLPEE----------------G---------------PPGTITSL----------RLP 142 (433)
T ss_pred Ccceeeeeeecccccc---cccccccc----------------C---------------CCCcccee----------ece
Confidence 9999999986542111 11000000 0 00000000 000
Q ss_pred cccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCc
Q 001776 743 IADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAP 822 (1015)
Q Consensus 743 ~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 822 (1015)
+.+..|-.+ ...++. .-...|...|.++.++.|+..++++. |=.|-+|++.-... +.
T Consensus 143 ~~~~~~~~v----------ea~prR--v~aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~----------sF 199 (433)
T KOG1354|consen 143 VEGRHDLEV----------EASPRR--VYANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ----------SF 199 (433)
T ss_pred eecccccee----------eeeeee--eccccceeEeeeeeecCccceEeecc-ceeeeeccccccCC----------ce
Confidence 000000000 001111 11245899999999999999888765 66888998753211 12
Q ss_pred eecCCCCCccccccCCCCCCCCCccEEEEccC-CCEEEEEc-CCeEEEEeCCCCcee----EEeC------------CCC
Q 001776 823 QLWQPPSGILMTNDISDTNPEDAVPCFALSKN-DSYVMSAS-GGKISLFNMMTFKTM----TTFM------------PPP 884 (1015)
Q Consensus 823 ~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~d-g~~la~~s-dg~i~iwd~~~~~~~----~~l~------------~~~ 884 (1015)
.+.|+.....-. ...-|++..|+|. ...++..+ .|+|++-|++...+- +.+. +-.
T Consensus 200 nIVDIKP~nmEe-------LteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiI 272 (433)
T KOG1354|consen 200 NIVDIKPANMEE-------LTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEII 272 (433)
T ss_pred eEEEccccCHHH-------HHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHh
Confidence 233333222111 2335778889885 34555555 899999999732111 1111 122
Q ss_pred CCeeEEEEcCCCCcEEEEEEcCCeEEEEEcc-cceEEEEEcCcc------------CCe---EEEEEeCCCCEEEEEeCC
Q 001776 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVR-VDEVKTKLKGHQ------------KRI---TGLAFSNTLNVLVSSGAD 948 (1015)
Q Consensus 885 ~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~-~~~~~~~l~~h~------------~~v---~~l~~spdg~~l~s~s~d 948 (1015)
..|..+.|++ .|+++++-+. -+|++||+. ..+++.+.+.|. +.| ..++||.++.+++||+..
T Consensus 273 sSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 273 SSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred hhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccccc
Confidence 3588899999 9999987643 589999994 456666666553 222 358899999999999999
Q ss_pred CcEEEEEccCcccccceE-----------------EEecCCCc---------cccCCceEEEEccCCCEEEEEeCCeEEE
Q 001776 949 SQLCVWSTDGWEKQASKF-----------------LTIPNGRT---------ASALADTRVQFHLDQTHLLAVHETQIAI 1002 (1015)
Q Consensus 949 g~v~vWd~~~~~~~~~~~-----------------~~~~~~~~---------~~~~~v~~l~fs~dg~~l~~~~d~~i~v 1002 (1015)
..++++++..|....... +.....+. ....-|...+|.|..+.+|++..+.+++
T Consensus 351 n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnnlyi 430 (433)
T KOG1354|consen 351 NVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNNLYI 430 (433)
T ss_pred ceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCceEE
Confidence 999999977665331110 00001110 0112356678999999999987888887
Q ss_pred EE
Q 001776 1003 YE 1004 (1015)
Q Consensus 1003 wd 1004 (1015)
|.
T Consensus 431 f~ 432 (433)
T KOG1354|consen 431 FQ 432 (433)
T ss_pred ec
Confidence 63
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-08 Score=101.42 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=115.6
Q ss_pred CCCCccEEEEccCCCEEEEEc-CC-eEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceE
Q 001776 842 PEDAVPCFALSKNDSYVMSAS-GG-KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEV 919 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~s-dg-~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~ 919 (1015)
+.+.|.-..+.-+++-++.|. || .+-|+|..+++. +.+...-+.|.++..++ +|++++++.+...+.+.|+++|..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCe
Confidence 667788888888888888887 76 899999987765 44566788999999999 999999998888999999999987
Q ss_pred EEEEcCccCCeEEEEEeCCCCEEEEEeCCC----cEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE
Q 001776 920 KTKLKGHQKRITGLAFSNTLNVLVSSGADS----QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1015)
Q Consensus 920 ~~~l~~h~~~v~~l~~spdg~~l~s~s~dg----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1015)
...-+...+-|+...|+|+++++|-+--+| .|+++|+.+++.- .+..+.++ -.+-+|.|||++|..
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy---~vTT~ta~------DfsPaFD~d~ryLYf 505 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY---DVTTPTAY------DFSPAFDPDGRYLYF 505 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE---EecCCccc------ccCcccCCCCcEEEE
Confidence 655556677899999999999999887766 5899999997732 23334433 357899999999987
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-09 Score=120.75 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=140.6
Q ss_pred cccCCCCEEEEEEccCCCEEE---EEECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-C--
Q 001776 414 SSDYTASVNRVMWSPDGTLFG---VAYSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-E-- 485 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~la---s~~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~-- 485 (1015)
+......+.+-+|||||+.++ +...+| .|.+.++.+|+..+ +....+.....+|||||+. |+..+ .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~--Laf~s~~~g 253 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL--LAFISDRYG 253 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE--EEEEECCCC
Confidence 344556677889999998633 343443 57778888876432 3334455567899999994 44433 2
Q ss_pred --CCeEEEEEcCCC---ceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCCeEEEEe--CCC-CCceeeecCCCCceEE
Q 001776 486 --DRVIKVWDAVTG---TKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWL--YDN-LGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 486 --dg~v~vwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd--~~~-~~~~~~~~~~~~~i~~ 556 (1015)
|..+..|++..+ +......++.......+|+| ||+.|+..+ .+|...+|. ++. +.....+......+..
T Consensus 254 ~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~ 331 (428)
T PRK01029 254 NPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSC 331 (428)
T ss_pred CcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccc
Confidence 333445777653 33333332223345567755 446666554 566555554 432 2223334444456678
Q ss_pred EEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe---CCCcEEEEeCCCCcee
Q 001776 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~ 633 (1015)
..|+|||+.|+..+... +...|++||+.+++....... . ..+....|+|||+.|+... ....|++||+.+++..
T Consensus 332 p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 332 PAWSPDGKKIAFCSVIK-GVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred eeECCCCCEEEEEEcCC-CCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 89999999999876542 345799999998876544333 2 2456789999999887654 2457999999887765
Q ss_pred EEEecCCCCCCcceEEEcCCC
Q 001776 634 ASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
..... ...+...+|+|-.
T Consensus 409 ~Lt~~---~g~~~~p~Ws~~~ 426 (428)
T PRK01029 409 KIVIG---SGEKRFPSWGAFP 426 (428)
T ss_pred EeecC---CCcccCceecCCC
Confidence 54432 2345678888743
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-10 Score=125.29 Aligned_cols=210 Identities=15% Similarity=0.082 Sum_probs=138.5
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECC---CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC--e
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR--V 488 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~d---g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg--~ 488 (1015)
+..+...+...+|||||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 34566789999999999999988654 479999999875432 3445666778999999984 334445444 5
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC-CC--eEEEEeCCCCCceeeecCCCCceEEEEECCCCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|++||+.++... .+..+........|++ +|+.|+..+. ++ .|.++|+.+.+. ..+.........+.|+|+|++
T Consensus 260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 260 IYVMDLDGKQLT-RLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred EEEEECCCCCEE-ECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCE
Confidence 889998877543 3444444444566755 4566665544 33 577778775543 333334556678899999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC---cEEEEeCCCCceeEEEe
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF---MIKFWDMDNVNLLASID 637 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 637 (1015)
++.+..+. +...|.+||+.++.... +.... ......|+|+++.|+..+.++ .+++.+. ++.....+.
T Consensus 336 i~~~~~~~-~~~~i~~~d~~~~~~~~-l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~ 405 (417)
T TIGR02800 336 IAFVHREG-GGFNIAVMDLDGGGERV-LTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARLP 405 (417)
T ss_pred EEEEEccC-CceEEEEEeCCCCCeEE-ccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeECC
Confidence 99887543 34579999998765433 22221 233468999999988877543 3555554 344444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.8e-09 Score=107.92 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=167.9
Q ss_pred CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC----------CCeEEEEEcc
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYTYH 448 (1015)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------dg~v~iwd~~ 448 (1015)
|.|.+.|..+++.+.... .+.... .+ +||||+.|.++.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~------------------~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTD------------------GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred ceEEEEECCCCEEEEEEE------------------ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 889999999988776421 121112 24 9999999888765 6789999999
Q ss_pred CCceeeeeeEEec--c---cCceeEEEEecCCCceEEEEE--eCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCc
Q 001776 449 GGDELRNHLEIEA--H---VGSVNDLAFSYPNKQLSVVTC--GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521 (1015)
Q Consensus 449 ~~~~~~~~~~~~~--h---~~~V~~~~~s~~~~~~~l~s~--s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 521 (1015)
+.+.+..+. +.. + ...-..++++|||+. ++.. +.+..|-+.|+.+++.+.++.-.. ...-.. ..++
T Consensus 86 t~~~~~~i~-~p~~p~~~~~~~~~~~~ls~dgk~--l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~--t~e~- 158 (352)
T TIGR02658 86 THLPIADIE-LPEGPRFLVGTYPWMTSLTPDNKT--LLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP--TAND- 158 (352)
T ss_pred cCcEEeEEc-cCCCchhhccCccceEEECCCCCE--EEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE--ecCC-
Confidence 988776332 111 1 123347899999994 4443 348999999999999998887422 111111 1121
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceee-----ecCCCCce-EEEEECC-CCCEEEEEeeCCCCCceEEEEeCCCC-----ee
Q 001776 522 QFIFSTATDGKIKAWLYDNLGSRVD-----YDAPGHSS-TMMAYSA-DGARLFSCGTNKEGESYLVEWNESEG-----AV 589 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~i-~~~~~s~-~~~~l~~~~~d~~~~~~i~iwd~~~~-----~~ 589 (1015)
. ..+.+.||......++....... +......+ ..-.|.+ +|+++++... +.|.+.|+... ..
T Consensus 159 ~-~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 159 T-FFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred c-cEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcceecce
Confidence 1 22344566655544443332111 11100000 0113455 8888777653 46999995432 22
Q ss_pred eEEeeCC------CCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCC
Q 001776 590 KRTYHGL------GKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE 653 (1015)
Q Consensus 590 ~~~~~~~------~~~~i~~v~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 653 (1015)
...+... ....+..++++++++.+++.. ..+.|.++|..+++.+..+... ..+..++++||
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~D 309 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQD 309 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCC
Confidence 2222111 112334589999999988853 2257999999999999998753 36789999999
Q ss_pred CC-EEEEEe-CCCcEEEEEccCCceeeeee
Q 001776 654 GI-LLAVST-NDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 654 ~~-~l~~~~-~dg~i~iw~~~~~~~~~~~~ 681 (1015)
++ +|++.. .++.|.++|..++ +.++.+
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~-k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETG-KELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCC-eEEeee
Confidence 99 777666 6788999999998 555555
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=124.31 Aligned_cols=226 Identities=11% Similarity=0.087 Sum_probs=142.2
Q ss_pred eEEEeccCCCeeEEEeccCCCeEEEEEecC--CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEE
Q 001776 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 426 (1015)
......+...+...+|||||+.++++...+ ..|.+||+.+++... +....+.+...+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~ 250 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW 250 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence 334446778899999999999776665443 369999998886543 2223344557899
Q ss_pred ccCCCEEEEE-ECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCC--eEEEEEcCCCceE
Q 001776 427 SPDGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDR--VIKVWDAVTGTKQ 500 (1015)
Q Consensus 427 spdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg--~v~vwd~~~~~~~ 500 (1015)
||||+.|+.. +.+| .|.+||+.+++.. .+..+........|+|||+. ++..+ .++ .|+++|+.+++..
T Consensus 251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~--i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT--LYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECCCCCEE
Confidence 9999988754 4444 5888899887532 34456666777899999994 44443 333 6778888777654
Q ss_pred EEeeCCCCCEEEEeecccCCccEEEEEeC-CC--eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCc
Q 001776 501 YIFEGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577 (1015)
Q Consensus 501 ~~~~~h~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~ 577 (1015)
.... .........|+++ |+.++..+. ++ .|.+||+.++....... ........|+|||+.++..+..+ +..
T Consensus 325 ~lt~-~~~~~~~~~~Spd--g~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~-g~~ 398 (430)
T PRK00178 325 RVTF-VGNYNARPRLSAD--GKTLVMVHRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQ-GRG 398 (430)
T ss_pred Eeec-CCCCccceEECCC--CCEEEEEEccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecC-Cce
Confidence 3221 1222233456554 466766554 33 47888888765433222 12223568999999998877543 355
Q ss_pred eEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
.+.+++... .....+..... .+...+|+|
T Consensus 399 ~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 399 VLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 688888753 33334443322 455556665
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-09 Score=121.54 Aligned_cols=226 Identities=11% Similarity=0.069 Sum_probs=140.7
Q ss_pred cCCCeeEEEeccCCCe--EEEEEecCC--eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCC
Q 001776 355 QGSAVKSMDFHPVQQI--LLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~--lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg 430 (1015)
....+..-+|||||+. ++++...+| .|.+.++.+++... +....+.....+|||||
T Consensus 183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK 242 (428)
T ss_pred CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence 4556778899999976 333544443 58888888876543 22234455678999999
Q ss_pred CEEEEEEC-----CCeEEEEEccCCc--eeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCeEEEE--EcCC-Cce
Q 001776 431 TLFGVAYS-----KHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVW--DAVT-GTK 499 (1015)
Q Consensus 431 ~~las~~~-----dg~v~iwd~~~~~--~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~v~vw--d~~~-~~~ 499 (1015)
+.||..+. +..+.+|++.++. .... ...++.......+|+|||+ .|+..+ .+|...+| ++.. +..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGT--RLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEECcccccc
Confidence 99987653 2234457776532 1221 1222334456789999999 455444 56655555 4432 333
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEeCC---CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
...+..+...+....|+|+ |+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..+.. .+.
T Consensus 319 ~~~lt~~~~~~~~p~wSPD--G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~g~ 394 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPD--GKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-SNE 394 (428)
T ss_pred eEEeccCCCCccceeECCC--CCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-CCC
Confidence 4455545556667777655 4667665443 36899999876654333 223456788999999998876543 345
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
..|+++|+..++........ +.+...+|+|..
T Consensus 395 ~~L~~vdl~~g~~~~Lt~~~--g~~~~p~Ws~~~ 426 (428)
T PRK01029 395 SELYLISLITKKTRKIVIGS--GEKRFPSWGAFP 426 (428)
T ss_pred ceEEEEECCCCCEEEeecCC--CcccCceecCCC
Confidence 67999999887765544322 245566777653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-10 Score=123.55 Aligned_cols=223 Identities=12% Similarity=0.103 Sum_probs=138.3
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEecCC--eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD 429 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd 429 (1015)
...+...+.+..|||||+.++++...++ .|++||+.+++.... ....+.....+||||
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSPD 272 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSPD 272 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECCC
Confidence 3446778899999999997766655444 588899988764321 111233446899999
Q ss_pred CCEEEEE-ECCCe--EEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCC--eEEEEEcCCCceEEEe
Q 001776 430 GTLFGVA-YSKHI--VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDR--VIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 430 g~~las~-~~dg~--v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg--~v~vwd~~~~~~~~~~ 503 (1015)
|+.|+.. +.+|. |.+||+.+++. . .+..+.......+|+|||+. |+..+ .++ .|+++|+.+++... +
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~--I~f~s~~~g~~~Iy~~dl~~g~~~~-L 345 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKS--LIFTSERGGKPQIYRVNLASGKVSR-L 345 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCe-E---ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCEEE-E
Confidence 9988764 55664 77778887653 2 34445556778899999994 44433 334 56777877776543 2
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeC-CC--eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTAT-DG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
..........+|+++ |+.++..+. ++ .|.++|+.++.... +... .......|+|||+.|+.....+ +...++
T Consensus 346 t~~g~~~~~~~~SpD--G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~-g~~~l~ 420 (448)
T PRK04792 346 TFEGEQNLGGSITPD--GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQ-GKQVLA 420 (448)
T ss_pred ecCCCCCcCeeECCC--CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecC-CceEEE
Confidence 212222234566554 456665544 44 35556776654432 2211 1223457999999998877543 455688
Q ss_pred EEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 581 EWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
+++. +|.....+..... .+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 8887 4555555554433 455667766
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-10 Score=109.98 Aligned_cols=212 Identities=16% Similarity=0.250 Sum_probs=137.5
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC-CCceEEEee-CCCCCEEEEeecccCCccEEEEEeCCCeEEE
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKA 535 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~v 535 (1015)
.++||.+.|++...-|... -+++.+.|.+++||--+ .++.-..+. .-..+++++.+... ...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc--ceEEEEEEecceEEE
Confidence 5788999999888888777 58999999999999533 343322222 12355677766543 378899999999988
Q ss_pred EeCC----CCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC-CCCeeeEEeeCCCCCCeEEEEEeCCC
Q 001776 536 WLYD----NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE-SEGAVKRTYHGLGKRSVGVVQFDTTK 610 (1015)
Q Consensus 536 wd~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~-~~~~~~~~~~~~~~~~i~~v~~~~~~ 610 (1015)
+.+. .......+..|...+..+.|+-...++++.+.|+ -..|.. +.+..+..+.-.. ......+.-
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk-----~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~-- 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDK-----QFAWHCTESGNRLGGYNFET--PASALQFDA-- 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecccc-----ceEEEeeccCCcccceEeec--cCCCCceee--
Confidence 8654 3334445666777899999999999999988765 234432 2232222111100 001111111
Q ss_pred CEEEEEeCCCcEEEEeCC--CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCC
Q 001776 611 NRFLAAGDEFMIKFWDMD--NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESR 684 (1015)
Q Consensus 611 ~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 684 (1015)
.+.+.|...|.|.+-.+. .-.++..+.+| ...+.+++|.+....|.+|..|..+.+||+.-.......+.+|
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc
Confidence 144555566666665544 33455556544 7799999999999999999999999999987654333344433
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.6e-10 Score=117.29 Aligned_cols=193 Identities=15% Similarity=0.166 Sum_probs=154.3
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEe------c------------CCCceEEEEEeCCCeE
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS------Y------------PNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s------~------------~~~~~~l~s~s~dg~v 489 (1015)
|-..++|....||.++||+...++....+.....-.+..++..|. | .+....++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999999887554333222334455555553 1 1122378889999999
Q ss_pred EEEEcCCCceEEEee--CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEE
Q 001776 490 KVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 490 ~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
.++++..|+....+. .|.++|.++.++..- ..|.+++.|+.+..|+................+.+++.+|||+.++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~--~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL--GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccccc--CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 999999999988886 599999999875443 5899999999999999998888888888888999999999999999
Q ss_pred EEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCC-----CCEEEEEe-CCCcEEEEeCCC
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT-----KNRFLAAG-DEFMIKFWDMDN 629 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~-----~~~l~~~~-~dg~i~vwd~~~ 629 (1015)
+++. .|.+||+++++.+..|.+|.. +|+++.|..+ |.+++++. .+..+.+|-+..
T Consensus 161 ~as~------~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TASR------QIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eccc------eEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 8864 599999999999999999998 9999999877 67777654 555677776554
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-09 Score=122.07 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=138.1
Q ss_pred EEeccCCCeeEEEeccCCCeEEEEEecC--CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNM--GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~lla~g~~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1015)
....+...+...+|||||++++++...+ ..|++||+.+++... +..+.+.+.+++|+|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGAPAFSP 243 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence 3345667899999999999665554333 479999998886443 233455677899999
Q ss_pred CCCEEEEE-ECCC--eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC-CC--eEEEEEcCCCceEEE
Q 001776 429 DGTLFGVA-YSKH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR--VIKVWDAVTGTKQYI 502 (1015)
Q Consensus 429 dg~~las~-~~dg--~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~-dg--~v~vwd~~~~~~~~~ 502 (1015)
||+.|+.. +.++ .|.+|++.++... .+..+........|+|||+ .|+..+. ++ .|+++|+.+++.. .
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy~~d~~~~~~~-~ 316 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIYMMDADGGEVR-R 316 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCEE-E
Confidence 99988754 4343 5888898876532 2444555566789999999 4555443 33 6888888776643 3
Q ss_pred eeCCCCCEEEEeecccCCccEEEEEeCCC---eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 503 FEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 503 ~~~h~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
+..+...+....|+++ |++++.++.++ .|.+||+.+..... +.. ........|+|+|++|+....++ +...+
T Consensus 317 l~~~~~~~~~~~~spd--g~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~-~~~~~~p~~spdg~~l~~~~~~~-~~~~l 391 (417)
T TIGR02800 317 LTFRGGYNASPSWSPD--GDLIAFVHREGGGFNIAVMDLDGGGERV-LTD-TGLDESPSFAPNGRMILYATTRG-GRGVL 391 (417)
T ss_pred eecCCCCccCeEECCC--CCEEEEEEccCCceEEEEEeCCCCCeEE-ccC-CCCCCCceECCCCCEEEEEEeCC-CcEEE
Confidence 4434555666777654 46788777765 78888887644322 222 22334568999999999887654 33456
Q ss_pred EEEeCCCCeeeEEee
Q 001776 580 VEWNESEGAVKRTYH 594 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~~ 594 (1015)
++.+.. +.....+.
T Consensus 392 ~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 392 GLVSTD-GRFRARLP 405 (417)
T ss_pred EEEECC-CceeeECC
Confidence 666643 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=104.93 Aligned_cols=251 Identities=17% Similarity=0.078 Sum_probs=165.6
Q ss_pred cCCCeeEEEecc---CCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCC---CCEEEEEEcc
Q 001776 355 QGSAVKSMDFHP---VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT---ASVNRVMWSP 428 (1015)
Q Consensus 355 h~~~V~~~~~sp---~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp 428 (1015)
.++.+..+.|.. +|...++-+..+|.|.++.......... ++ + +..-. ....++.|++
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~ 131 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDIST 131 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeec
Confidence 445666677753 4454667777789999988755432221 00 0 11111 1345788999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC-CCceEEE-eeCC
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV-TGTKQYI-FEGH 506 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~-~~~h 506 (1015)
.+..++++..+|.+.+-+..... +.....++.|.-+.+.+.|+....+ ++.+||.|+.+..||++ .++.+.. .+.|
T Consensus 132 ~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 132 SGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred cCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceee
Confidence 99999999999999855544432 3344468899999999999987776 79999999999999998 4555554 5668
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCC--EEEEEeeCCCCCceEEEEeC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGA--RLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~~~~~d~~~~~~i~iwd~ 584 (1015)
...|.+|.-++ +.+.++++|+.|-.|++||.++......-....+.|..+.++|.-. .++++-.+| .++-+.
T Consensus 210 ~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~ 283 (339)
T KOG0280|consen 210 TSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDS 283 (339)
T ss_pred ecceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEe
Confidence 99999997655 4457999999999999999997666555555567899999998543 334433333 455555
Q ss_pred CCC--e---eeEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEE-EEeCCCC
Q 001776 585 SEG--A---VKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK-FWDMDNV 630 (1015)
Q Consensus 585 ~~~--~---~~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~-vwd~~~~ 630 (1015)
..+ + .....+.|.. -+..-.|......+++++ .|..++ +|-.-++
T Consensus 284 ~~~~~e~~~~~~s~~~hdS-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDS-LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccccchheeeeccccccc-eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 443 2 2223333433 333334433345678776 666644 6654443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-07 Score=95.50 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=180.2
Q ss_pred CCccccCCCCC--ceeEEEeccCCCeeEEEeccCCCeEEEEEec--CCeEEEEEcCC--cceEeEeeeEEEeccCCCccc
Q 001776 336 GQSSYSTDDLP--KTVVMTLNQGSAVKSMDFHPVQQILLVVGTN--MGDVMLWEVGS--RERIAVKSFKVWELGACSMPL 409 (1015)
Q Consensus 336 ~~~~~~~~~~~--~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~--dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~ 409 (1015)
-|..|..+... -.......+.+.++-++|+|++++|.+.... +|.|.-|.++. |+.......
T Consensus 17 gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~------------ 84 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ------------ 84 (346)
T ss_pred ceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc------------
Confidence 34444444222 2344555688899999999999955444444 57788877765 554432111
Q ss_pred cccccccCCCCEEEEEEccCCCEEEEEEC-CCeEEEEEccCCceeeeeeEEecccCc----------eeEEEEecCCCce
Q 001776 410 QASLSSDYTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHGGDELRNHLEIEAHVGS----------VNDLAFSYPNKQL 478 (1015)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~las~~~-dg~v~iwd~~~~~~~~~~~~~~~h~~~----------V~~~~~s~~~~~~ 478 (1015)
...+ .+-..++++++|++|+++.. .|.|.++.+.....+........|.+. +.+..+.|+++
T Consensus 85 ---~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-- 157 (346)
T COG2706 85 ---TLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR-- 157 (346)
T ss_pred ---ccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--
Confidence 1222 33388999999999999865 578999999764334333234446665 88999999999
Q ss_pred EEEEEeC-CCeEEEEEcCCCceEE----EeeCCCCCEEEEeecccCCccEEEEEe-CCCeEEEEeCCCCCc-eeeec---
Q 001776 479 SVVTCGE-DRVIKVWDAVTGTKQY----IFEGHESPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDNLGS-RVDYD--- 548 (1015)
Q Consensus 479 ~l~s~s~-dg~v~vwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~~~~~--- 548 (1015)
++++... --.|.+|++..|+... .+ .....-..|.|+|+. ++..... .+++|.+|..+.... ...+.
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred EEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceEEEeeeec
Confidence 5665542 2368999999876543 22 234556789998765 5665544 589999999887422 11111
Q ss_pred ------CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC--CCeeeE--EeeCCCCCCeEEEEEeCCCCEEEEEeC
Q 001776 549 ------APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES--EGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (1015)
Q Consensus 549 ------~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~--~~~~~~--~~~~~~~~~i~~v~~~~~~~~l~~~~~ 618 (1015)
....+...+..++||++|+++... ...|.+|.+. ++++.. ....+.. ..+...+++.+++|+++++
T Consensus 235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg---~dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 235 TLPEDFTGTNWAAAIHISPDGRFLYASNRG---HDSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred cCccccCCCCceeEEEECCCCCEEEEecCC---CCeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEEEcc
Confidence 112367789999999999987543 2257777654 343322 1222222 3567889999999999984
Q ss_pred -CCcEEEEeCC--CCceeEEEecCCCCCCcceEEEc
Q 001776 619 -EFMIKFWDMD--NVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 619 -dg~i~vwd~~--~~~~~~~~~~~~~~~~v~~v~~s 651 (1015)
+..|.+|..+ +|++-...... ......||.|.
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~~~~~-~~p~Pvcv~f~ 345 (346)
T COG2706 311 KSDNITVFERDKETGRLTLLGRYA-VVPEPVCVKFL 345 (346)
T ss_pred CCCcEEEEEEcCCCceEEeccccc-CCCCcEEEEEc
Confidence 4568888654 45443332211 12233466653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-09 Score=111.27 Aligned_cols=190 Identities=15% Similarity=0.254 Sum_probs=148.3
Q ss_pred eEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEE--------------------ccC
Q 001776 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW--------------------SPD 429 (1015)
Q Consensus 370 ~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~--------------------spd 429 (1015)
.++|..+.||.++|||...++......- ...-++..++..| +-|
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p----------------~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~ 69 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAP----------------IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLD 69 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeecc----------------chhccCcceeEEEEEEeccchHHHHhHHHHhhccCC
Confidence 3788889999999999998876553110 0112233333333 224
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~ 509 (1015)
-..++-|...|.|.+|++..|+..... .-..|.+.|.++.++.+-. .|.+++.|+.+..|+...++.++.+......
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~ 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQKPL 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccCCCc
Confidence 557888899999999999998855432 3357999999999998887 8999999999999999999999999999999
Q ss_pred EEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCC-----CCEEEEEeeCCCCCceEEEEeC
Q 001776 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD-----GARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 510 v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
+.++++.++ |..+++++ +.|++||+++.+....+.+|.++|+++.|..+ |.++++... ....+.+|-.
T Consensus 147 ~~sl~is~D--~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~w~v 219 (541)
T KOG4547|consen 147 VSSLCISPD--GKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITVWVV 219 (541)
T ss_pred cceEEEcCC--CCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeEEEE
Confidence 999998765 57888876 78999999999999999999999999999877 778877542 1233666654
Q ss_pred C
Q 001776 585 S 585 (1015)
Q Consensus 585 ~ 585 (1015)
.
T Consensus 220 ~ 220 (541)
T KOG4547|consen 220 E 220 (541)
T ss_pred E
Confidence 3
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=107.88 Aligned_cols=167 Identities=19% Similarity=0.286 Sum_probs=123.1
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc---------HHHHHHHhhcccHHHHHHHhcCCc--cccCCcchhHH
Q 001776 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFFFN---------MRYFEDMVTNGEWDEVEKYLSGFT--KVDDNRYSMKI 72 (1015)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~ 72 (1015)
.+.|+-|||+.||-..||.++|+.+.+|+|+..+ ...+|.+|..|+-++|+..+..+. .++.+ ..+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~l 101 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---REL 101 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hhH
Confidence 4678999999999999999999999999999772 577899999999999999999882 23332 238
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhcccccccccccccCCC--ChhHHHHHHHHHHhh
Q 001776 73 FFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD--TKSARGIMLAELKKL 150 (1015)
Q Consensus 73 ~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~ 150 (1015)
.|.+.+|+++||+..+...+|+.|+|.+|.|....+++.++.|...+..--++...... ... ....|.++.+.++..
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a 180 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA 180 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999887777777777766543333111100 001 123388888887776
Q ss_pred cccCCCcccccCCCCCchHHHHHHHHHHHHHH
Q 001776 151 IEANPLFRDKLQFPSLKNSRLRTLINQSLNWQ 182 (1015)
Q Consensus 151 ~~~~~~~~~~~~~~~~p~~rL~~ll~qa~~~q 182 (1015)
|-...- . --..+|..||..-...|
T Consensus 181 iL~~~~------~--~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 181 ILASQE------H--ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHhc------c--cccchHHHHHHHHHHHH
Confidence 543111 0 11346777774444444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-08 Score=110.15 Aligned_cols=304 Identities=12% Similarity=0.046 Sum_probs=179.2
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCe
Q 001776 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV 601 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i 601 (1015)
..+++++.+|.+..+|..+++................. ++..+++++. ++.++.+|..+|+.+....... .+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~--~~ 137 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTE----KGEVIALDAEDGKELWRAKLSS--EV 137 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcC----CCEEEEEECCCCcEeeeeccCc--ee
Confidence 47888888999999999888877665554432222222 4566776654 3469999999998877655432 22
Q ss_pred EE-EEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEEEccCCcee
Q 001776 602 GV-VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (1015)
Q Consensus 602 ~~-v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 677 (1015)
.+ ... .+..++.++.+|.|+.||..+|+.+-.......... ..+.... +..++.+..++.+..+|..+|...
T Consensus 138 ~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 138 LSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred ecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEe
Confidence 21 112 245777788899999999999998777654321100 0111121 346777888899999999888433
Q ss_pred eeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeec
Q 001776 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (1015)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~ 757 (1015)
...-..... + .. ..-++.+.
T Consensus 214 W~~~~~~~~----------------------------------------------------g------~~-~~~~~~~~- 233 (377)
T TIGR03300 214 WEQRVALPK----------------------------------------------------G------RT-ELERLVDV- 233 (377)
T ss_pred eeeccccCC----------------------------------------------------C------CC-chhhhhcc-
Confidence 211000000 0 00 00000000
Q ss_pred cccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccC
Q 001776 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (1015)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l 837 (1015)
... ..+ .+..+++++.+|.+..||..+++ .+|....+
T Consensus 234 -----------------~~~----p~~--~~~~vy~~~~~g~l~a~d~~tG~-------------~~W~~~~~------- 270 (377)
T TIGR03300 234 -----------------DGD----PVV--DGGQVYAVSYQGRVAALDLRSGR-------------VLWKRDAS------- 270 (377)
T ss_pred -----------------CCc----cEE--ECCEEEEEEcCCEEEEEECCCCc-------------EEEeeccC-------
Confidence 000 011 13356666777777777654321 22322210
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCC-CCeeEEEEcCCCCcEEEEEEcCCeEEEEEcc
Q 001776 838 SDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVR 915 (1015)
Q Consensus 838 ~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~ 915 (1015)
....++ .++..+.+++ +|.+..+|..+++.+....... ........ .+..+++++.+|.|+++|..
T Consensus 271 -------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 271 -------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECC
Confidence 011122 2345555555 8999999999998876653222 22233333 24578889999999999999
Q ss_pred cceEEEEEcCccCCeEE-EEEeCCCCEEEEEeCCCcEEEE
Q 001776 916 VDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVW 954 (1015)
Q Consensus 916 ~~~~~~~l~~h~~~v~~-l~~spdg~~l~s~s~dg~v~vW 954 (1015)
+|+.+..+..+...+.. ..+. + ..|+.++.||.|+.|
T Consensus 339 tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 339 DGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 99999988866654433 2333 3 358889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.3e-09 Score=102.11 Aligned_cols=246 Identities=10% Similarity=0.114 Sum_probs=172.9
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEcc-CCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYH-GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~-~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
.+.||.+.|+....-|...-+.+.+.|.+++||--. .++.-... ...-..+++++.+.++.. .|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence 478999999999999988899999999999999544 44432211 223456789999999888 7899999999988
Q ss_pred EEcC----CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEE
Q 001776 492 WDAV----TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 492 wd~~----~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
+.+. ....++.+..|..+|..+.|+-.+ .++++.+.|..+.---.+.+...-.+. . .+...+..+.+
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~-----~--~~~~t~~~~d~ 165 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYN-----F--ETPASALQFDA 165 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceE-----e--eccCCCCceee
Confidence 8664 334556677899999999887655 689999998877432222221111110 0 01111111222
Q ss_pred EEeeCCCCCceEE--EEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE-EEecCCCCCC
Q 001776 568 SCGTNKEGESYLV--EWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA-SIDADGGLQA 644 (1015)
Q Consensus 568 ~~~~d~~~~~~i~--iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~ 644 (1015)
.....++..+.+. -.....-.++.++.+|.+ .+.+++|.+....+++|..|..+.+||+...+.+. .+. ++...
T Consensus 166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~-~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~--gh~~k 242 (404)
T KOG1409|consen 166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTG-EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ--GHNDK 242 (404)
T ss_pred EEEEecccccceEEEEEeecCCceEEEEcCccc-ceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeec--cchhh
Confidence 2222223233333 334445567888888887 89999999999999999999999999997655433 333 44667
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 645 SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 645 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
|..+..-+--+.+++++.||.|.+|+.+..
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 888888888889999999999999998754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.8e-07 Score=101.50 Aligned_cols=271 Identities=15% Similarity=0.097 Sum_probs=166.0
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 450 (1015)
.+++++.+|.|..+|..+|+.+-...+. . .... ..+ .++..+++++.+|.+..+|..+|
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~-------~---------~~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG 125 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLD-------E---------RLSG---GVG--ADGGLVFVGTEKGEVIALDAEDG 125 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCC-------C---------Cccc---ceE--EcCCEEEEEcCCCEEEEEECCCC
Confidence 4677888999999999999875432111 0 0011 111 25778888899999999999999
Q ss_pred ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe-ecccCCccEEEEEeC
Q 001776 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC-PHHKENIQFIFSTAT 529 (1015)
Q Consensus 451 ~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~-~~~~~~~~~l~s~~~ 529 (1015)
+.+.... + .+.+.+.-.. .+. .++.++.++.++.||.++|+.+.++......+.... -.|.-.+..++.+..
T Consensus 126 ~~~W~~~-~---~~~~~~~p~v-~~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~ 198 (377)
T TIGR03300 126 KELWRAK-L---SSEVLSPPLV-ANG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFA 198 (377)
T ss_pred cEeeeec-c---CceeecCCEE-ECC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECC
Confidence 8765321 1 1222221111 233 467778899999999999999887764332211000 000001136778888
Q ss_pred CCeEEEEeCCCCCceeeecCCCC----c---eEEEEECC--CCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCC
Q 001776 530 DGKIKAWLYDNLGSRVDYDAPGH----S---STMMAYSA--DGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS 600 (1015)
Q Consensus 530 dg~i~vwd~~~~~~~~~~~~~~~----~---i~~~~~s~--~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 600 (1015)
++.+..+|..+++.......... . ...+.-+| .+..+++++.+ +.++.||..+|+.+.......
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~----g~l~a~d~~tG~~~W~~~~~~--- 271 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ----GRVAALDLRSGRVLWKRDASS--- 271 (377)
T ss_pred CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC----CEEEEEECCCCcEEEeeccCC---
Confidence 89999999988776554321110 0 00010111 24566666543 359999999998776654211
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeee
Q 001776 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (1015)
Q Consensus 601 i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 680 (1015)
..... ..+..+++++.+|.++.+|..+++.+-....... ........ .+..+++++.+|.++++|..++ +.+..
T Consensus 272 ~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~-~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG-~~~~~ 345 (377)
T TIGR03300 272 YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY-RQLTAPAV--VGGYLVVGDFEGYLHWLSREDG-SFVAR 345 (377)
T ss_pred ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC-CccccCEE--ECCEEEEEeCCCEEEEEECCCC-CEEEE
Confidence 11122 3467888888999999999999987765522111 11222222 4678889999999999999998 44444
Q ss_pred ec
Q 001776 681 VE 682 (1015)
Q Consensus 681 ~~ 682 (1015)
+.
T Consensus 346 ~~ 347 (377)
T TIGR03300 346 LK 347 (377)
T ss_pred EE
Confidence 43
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-07 Score=114.10 Aligned_cols=74 Identities=15% Similarity=0.111 Sum_probs=59.6
Q ss_pred eeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEc-------------CccCCeEEEEEeCCCCEEEEEeCCCcEEE
Q 001776 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-------------GHQKRITGLAFSNTLNVLVSSGADSQLCV 953 (1015)
Q Consensus 887 i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~-------------~h~~~v~~l~~spdg~~l~s~s~dg~v~v 953 (1015)
...+++++ +|.++++...++.|++||..++.+..... +.-.....++++++|+++++-+.++.|++
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 35889999 88888888889999999998876553321 11235678999999999999899999999
Q ss_pred EEccCccc
Q 001776 954 WSTDGWEK 961 (1015)
Q Consensus 954 Wd~~~~~~ 961 (1015)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99998764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-08 Score=96.31 Aligned_cols=249 Identities=13% Similarity=0.088 Sum_probs=158.8
Q ss_pred CCCCEEEEEEcc---CCC-EEEEEECCCeEEEEEccCCceeeeeeEEecccC---ceeEEEEecCCCceEEEEEeCCCeE
Q 001776 417 YTASVNRVMWSP---DGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG---SVNDLAFSYPNKQLSVVTCGEDRVI 489 (1015)
Q Consensus 417 h~~~V~~l~~sp---dg~-~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~---~V~~~~~s~~~~~~~l~s~s~dg~v 489 (1015)
..+.+..+.|.. +|. .++-+..+|.|.++..........+..+..-.- ...++.|++-+. -++++-.+|.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~ 145 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSI 145 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcE
Confidence 346677788875 555 667778889999998765433221112222111 245788998888 68888899999
Q ss_pred EEEEcCCCceE--EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCc-eee-ecCCCCceEEEEECC-CCC
Q 001776 490 KVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGS-RVD-YDAPGHSSTMMAYSA-DGA 564 (1015)
Q Consensus 490 ~vwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~-~~~~~~~i~~~~~s~-~~~ 564 (1015)
.+-+....... +.++.|....+...|+...+ +++++|+.|+.+..||++..+. +.. ...|...|.++.-+| .+.
T Consensus 146 ~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 146 SGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEEecceeeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 86665555443 48899999999998876555 7999999999999999994432 222 334566788887776 577
Q ss_pred EEEEEeeCCCCCceEEEEeCC-CCeeeEEeeCCCCCCeEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCcee--EEEec-C
Q 001776 565 RLFSCGTNKEGESYLVEWNES-EGAVKRTYHGLGKRSVGVVQFDTTKN-RFLAAGDEFMIKFWDMDNVNLL--ASIDA-D 639 (1015)
Q Consensus 565 ~l~~~~~d~~~~~~i~iwd~~-~~~~~~~~~~~~~~~i~~v~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~--~~~~~-~ 639 (1015)
++++|+.|. .|++||.+ -++++..-. ..+.|..+..+|.-. .++.+..-.-.+|-+...+... ..+.. .
T Consensus 225 ~I~TGsYDe----~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~ 298 (339)
T KOG0280|consen 225 YIATGSYDE----CIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDK 298 (339)
T ss_pred eEEEecccc----ceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccc
Confidence 889988755 59999998 455554333 234788999988643 2233333333566665543322 11111 1
Q ss_pred CCCCCcceEEEcCCCCEEEEEe-CCCcEE-EEEccCC
Q 001776 640 GGLQASPCIRFNKEGILLAVST-NDNGIK-ILANADG 674 (1015)
Q Consensus 640 ~~~~~v~~v~~s~~~~~l~~~~-~dg~i~-iw~~~~~ 674 (1015)
.+..-+..-.|......+|+++ .|+.++ +|-.-++
T Consensus 299 ~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 299 IHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2233344445544445688765 666655 7765544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=115.47 Aligned_cols=279 Identities=16% Similarity=0.262 Sum_probs=189.0
Q ss_pred eeeeCCCCCCCccccCCCC-------CceeEEEeccCC--CeeEEEeccCCC-eEEEEEecCCeEEEEEcCCcceEeEee
Q 001776 327 PVAYTPQSLGQSSYSTDDL-------PKTVVMTLNQGS--AVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKS 396 (1015)
Q Consensus 327 ~~~~s~~g~~~~~~~~~~~-------~~~~~~~~~h~~--~V~~~~~sp~g~-~lla~g~~dg~v~iwd~~~~~~~~~~~ 396 (1015)
++..+|.|+-++.++..++ +...-+.+.|-. .|-.+.|||... .+-++......-.+|++.......
T Consensus 29 a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~a--- 105 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNA--- 105 (1081)
T ss_pred ceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccc---
Confidence 4668888888777765543 455556666554 577888888542 134444555667788875433221
Q ss_pred eEEEeccCCCccccccccccCCCCEEEEEEccC-CCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCC
Q 001776 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475 (1015)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 475 (1015)
...++.+|+..|+.+.|.|. -..+|+++.|-.|..||+.+... .+.....-...-..++|+-..
T Consensus 106 -------------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 106 -------------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred -------------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccC
Confidence 12247899999999999994 56889999999999999988642 222344444556789999877
Q ss_pred CceEEEEEeCCCeEEEEEcCCC-ceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeec-CCCCc
Q 001776 476 KQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-APGHS 553 (1015)
Q Consensus 476 ~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~ 553 (1015)
. .+...+..+.|.+||.+.| ..+..+++|...|+.+.|...-. ..+.+++.|++|+.||.+......... ....+
T Consensus 171 p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~p 247 (1081)
T KOG0309|consen 171 P--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFP 247 (1081)
T ss_pred c--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCc
Confidence 6 4666677789999999876 56788999999999998865433 468899999999999988654433322 23446
Q ss_pred eEEEEECCCCCEEEEEeeCCCCCceEEE---------EeCCC-CeeeEEeeCCCCCCeEEEEEeC--------C--CCEE
Q 001776 554 STMMAYSADGARLFSCGTNKEGESYLVE---------WNESE-GAVKRTYHGLGKRSVGVVQFDT--------T--KNRF 613 (1015)
Q Consensus 554 i~~~~~s~~~~~l~~~~~d~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~i~~v~~~~--------~--~~~l 613 (1015)
+..-.+.|-|+-.+..-..| .+.+.+ |+..+ .+++++|.||.+ .|...-|-. + .-.|
T Consensus 248 iw~~r~~Pfg~g~~~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 248 IWRGRYLPFGEGYCIMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred ceeccccccCceeEeccccC--CeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeE
Confidence 66677777665444333222 223433 33333 367889999987 443332221 1 2368
Q ss_pred EEEeCCCcEEEEeCCC
Q 001776 614 LAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 614 ~~~~~dg~i~vwd~~~ 629 (1015)
++-+.|..+++|-+.+
T Consensus 325 VTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEeecCCceEeeeccH
Confidence 9999999999998753
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=109.60 Aligned_cols=511 Identities=11% Similarity=0.136 Sum_probs=262.7
Q ss_pred eeEEEeccCCCeEEEEEec----CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 359 VKSMDFHPVQQILLVVGTN----MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 359 V~~~~~sp~g~~lla~g~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
-+-..|+|..+ ++|+++. .|+|.||- ++|++.+... ..-.+++++|+|..-.|+
T Consensus 18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--------------------~P~hatSLCWHpe~~vLa 75 (1416)
T KOG3617|consen 18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT--------------------YPVHATSLCWHPEEFVLA 75 (1416)
T ss_pred ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc--------------------cceehhhhccChHHHHHh
Confidence 34567999998 6777653 57888875 4554332211 112456799999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEE--eeCC--CCCE
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI--FEGH--ESPV 510 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~h--~~~v 510 (1015)
.|..-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|....-..++. +-.| ...+
T Consensus 76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 99999999999987754322 4457999999999999999 899999999999998763322221 1112 2334
Q ss_pred EEEeecccCCcc------EEEEEeCCCeEE-EEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 511 YSICPHHKENIQ------FIFSTATDGKIK-AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 511 ~~i~~~~~~~~~------~l~s~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
+-++|.-..++. ..++.+++..+- .++.+......... + .=.|+|..++.++.+| +|+-.|
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~G----tVyyvd 218 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSG----TVYYVD 218 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCc----eEEEEc
Confidence 444443333321 223344443332 33333111110000 0 1246777777776544 455555
Q ss_pred CCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC-C----------------------------CCce--
Q 001776 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM-D----------------------------NVNL-- 632 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~-~----------------------------~~~~-- 632 (1015)
- .|+.......... | .+-|.+...-+++.-.+-++.++-. . .|-+
T Consensus 219 q-~g~~~~V~k~dS~--v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~ 294 (1416)
T KOG3617|consen 219 Q-NGRQRTVHKLDSE--V-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRK 294 (1416)
T ss_pred C-CCcEEEEEEccch--H-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccC
Confidence 2 3333322222110 0 0111111111111111111111110 0 0100
Q ss_pred eEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccc
Q 001776 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712 (1015)
Q Consensus 633 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1015)
-..+.. .....++|++++..+..|+.|...|.+.+|.-... .+.+.
T Consensus 295 ~eKyg~-e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~-----~f~g~---------------------------- 340 (1416)
T KOG3617|consen 295 SEKYGL-ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNK-----GFQGD---------------------------- 340 (1416)
T ss_pred Ccchhh-hcCCceEEEEEeccceEEEecccCCcEEEeeecCc-----cccCC----------------------------
Confidence 000111 11246889999999999999999999999953211 01110
Q ss_pred ccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEE
Q 001776 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAIL 792 (1015)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~ 792 (1015)
.++..|.+.+.. ...+.|+.+.|.|-...++
T Consensus 341 ------------------------------------p~~d~w~l~~~~-------------e~~g~I~~i~Wg~~k~~~a 371 (1416)
T KOG3617|consen 341 ------------------------------------PTIDVWTLNGKR-------------ESLGKISLIRWGPIKSTAA 371 (1416)
T ss_pred ------------------------------------CCcceEEecCch-------------hhccceEEEEeccccchhh
Confidence 134456554321 1346677888888665555
Q ss_pred EeccCcEEEEeeccccCCCCCCc----eecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEE
Q 001776 793 ALASNAVHKLWKWPRNERNSTGK----ATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISL 868 (1015)
Q Consensus 793 ~~~~dg~i~vw~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~i 868 (1015)
+-+....+.+=.-+-. ....++ ...+.++.+-...+|.... +. ..-++..++.+ .+.++.....+|..
T Consensus 372 vn~~~~v~ll~E~~l~-~~h~~~~~A~q~ss~S~~L~hc~sGv~~~--l~---~~~~~~gi~l~--e~~lvvwNgr~v~~ 443 (1416)
T KOG3617|consen 372 VNTEEDVVLLGENSLT-VKHRGKMAAIQTSSNSFTLLHCTSGVSQD--LK---LSIPSAGICLG--EKQLVVWNGRTVVT 443 (1416)
T ss_pred hhhhhheeeeccCchH-HHHhhhhHHhhhcCCceEEEeeccchhhh--hh---hccchhhheec--cceEEEEcCceEEE
Confidence 5444333222100000 000000 0001111122222222111 10 12233444443 33556666778888
Q ss_pred EeCCCCceeEE--eCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEE--cCccCCeEEEEEeCCCCEEEE
Q 001776 869 FNMMTFKTMTT--FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL--KGHQKRITGLAFSNTLNVLVS 944 (1015)
Q Consensus 869 wd~~~~~~~~~--l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l--~~h~~~v~~l~~spdg~~l~s 944 (1015)
|++.+...+.. ........++++... .++...++++ |.++.+. |.+.+.+ ..-.+.|.-+.+ .|.+++.
T Consensus 444 y~lq~SG~la~~~~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi--~g~~l~v 516 (1416)
T KOG3617|consen 444 YDLQTSGSLATIQCTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDI--MGELLIV 516 (1416)
T ss_pred EEecccchhHHHhhhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhh--ccceeEE
Confidence 88854221111 112223344455553 3444455444 4444443 3333333 223344444444 4889999
Q ss_pred EeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE--E-eC----CeEEEEEcCCceE
Q 001776 945 SGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA--V-HE----TQIAIYEAPKLEC 1010 (1015)
Q Consensus 945 ~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~-~d----~~i~vwd~~~g~~ 1010 (1015)
+...+.++-+|+...+...........+..+..+.+..+..+..|..+.+ + .+ .++.+||.++++.
T Consensus 517 ~t~~~~~k~~dvsr~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~ 589 (1416)
T KOG3617|consen 517 QTVSTVAKRLDVSRAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRF 589 (1416)
T ss_pred eehHHHHHHhhhhhhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhH
Confidence 99888888899888776554444444444444467778888777766555 2 33 4689999988754
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=125.10 Aligned_cols=203 Identities=18% Similarity=0.308 Sum_probs=158.4
Q ss_pred eEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc
Q 001776 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1015)
-+...++-..|.++.=+|... +.+||+.||.|++|.+..++.+.. |+ ..|. ..|+.+.|+.
T Consensus 2201 ~~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~ 2261 (2439)
T KOG1064|consen 2201 SVMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNH 2261 (2439)
T ss_pred eeEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcc
Confidence 344444678899999999998 679999999999999999987753 22 1233 8999999999
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe---CCCeEEEEEcCC-C--ceEEE
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG---EDRVIKVWDAVT-G--TKQYI 502 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s---~dg~v~vwd~~~-~--~~~~~ 502 (1015)
.|+.+..+..||.+.+|.+.. +.....+.|+...+...|-. . .+++++ .++.+.+||..- + .++.
T Consensus 2262 qGnk~~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2262 QGNKFGIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred cCCceeeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee-
Confidence 999999999999999999872 33336778999999999985 3 466664 577999999642 2 2333
Q ss_pred eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEE
Q 001776 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 503 ~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iw 582 (1015)
..|.+.++++++.|.. +++++|+.+|.|++||++..+.+..+.. +. ...++++++. ++.++||
T Consensus 2333 -~~H~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw 2395 (2439)
T KOG1064|consen 2333 -TCHDGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIW 2395 (2439)
T ss_pred -eecCCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEE
Confidence 7899999999998766 7999999999999999997766655543 33 4557777754 4469999
Q ss_pred eCCCCeeeEEeeCC
Q 001776 583 NESEGAVKRTYHGL 596 (1015)
Q Consensus 583 d~~~~~~~~~~~~~ 596 (1015)
++.....++.+...
T Consensus 2396 ~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2396 RLSEFGLLHTFPSE 2409 (2439)
T ss_pred EccccchhhcCchh
Confidence 99988777776543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-09 Score=111.91 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=183.8
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC-------CceEEEeeCCCCCEEEEeecccCCccEEEEEeCC
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT-------GTKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d 530 (1015)
.+.||...|..++--.+.+ -+++++.|++|++|.++. ..+..++..|+.+|.++.|..+. +++ ++.|
T Consensus 730 nf~GH~~~iRai~AidNEN--SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i--~ScD 803 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNEN--SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RSI--ASCD 803 (1034)
T ss_pred cccCcHHHhHHHHhccccc--ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--cee--eecc
Confidence 5789999999887766666 699999999999999863 34677889999999999886543 344 4568
Q ss_pred CeEEEEeCCCCCceeeec--CCCCceEEEEECCC-CCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCC----CCCCeEE
Q 001776 531 GKIKAWLYDNLGSRVDYD--APGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL----GKRSVGV 603 (1015)
Q Consensus 531 g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~----~~~~i~~ 603 (1015)
|.|++||.-.+....... ...+.+..+..-++ .+.++.++- ....+++++|.+.++....++.. ....+.+
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc--saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC--SAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec--cchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 999999976555443221 12223333333343 333433332 22557999999998877666533 2236788
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEE-EEccCCceeeeeec
Q 001776 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI-LANADGIRLLRTVE 682 (1015)
Q Consensus 604 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i-w~~~~~~~~~~~~~ 682 (1015)
+++.+.|+.++++-.+|.|.+.|.++|+.+..+... ......++ .|..+.++....|.++.+ |...++ .......
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldg-imh~q~k 957 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDG-IMHLQDK 957 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCC-eeeeccC
Confidence 999999999999999999999999999988776533 11222222 345677887778889988 877766 3333332
Q ss_pred CCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeecccc-C
Q 001776 683 SRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEIT-E 761 (1015)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~-~ 761 (1015)
.+..... .+.. -|..+++......+.+|.-.... .
T Consensus 958 pppepah-----------------------------------flqs---------vgpSLV~a~~Gn~lgVYad~a~~ha 993 (1034)
T KOG4190|consen 958 PPPEPAH-----------------------------------FLQS---------VGPSLVTAQNGNILGVYADSAELHA 993 (1034)
T ss_pred CCCcchh-----------------------------------hhhc---------cCceeEEeccCcEEEEEecchhhhh
Confidence 2221111 1111 12335555555566666422111 1
Q ss_pred CcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEE
Q 001776 762 PSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKL 802 (1015)
Q Consensus 762 ~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~v 802 (1015)
.... .++......+..++++.-|=...++.|.+.|.|.+
T Consensus 994 ~sti--tKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 994 ESTI--TKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhh--ccccccccCCccceeeeccccchhhccCCCCceee
Confidence 1111 11222234567788888888888888888887765
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=125.21 Aligned_cols=200 Identities=14% Similarity=0.239 Sum_probs=161.4
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
..+-..|.++.=+|...+.++|+.||.|++|....++.+....+. +. ..|+.+.|+.+|+ .+..+..||.+.+|.+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeeccc
Confidence 445678889999999999999999999999999988877655432 33 8899999999999 7889999999999996
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEe---CCCeEEEEeCCCCCc-eeeecCCCCceEEEEECCCCCEEEEEe
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
. .+.....+.|........|.. ..+++++ .++.+.+||...... -.....|.+..+++++.|....+++|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred C-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 5 677777888998888888754 3566654 568899998654332 223377888999999999999999998
Q ss_pred eCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001776 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 571 ~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 638 (1015)
.+| .+++||++..+.++.+.. +. ...++++|+..|.++||++.....+..+..
T Consensus 2356 r~G----~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 RKG----EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcC----cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 765 499999998888777654 33 457899999999999999998877777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-07 Score=100.52 Aligned_cols=216 Identities=11% Similarity=0.006 Sum_probs=131.8
Q ss_pred CCccccCCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEec---CCeEEEEEcCCcceEeEeeeEEEeccCCCcccccc
Q 001776 336 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTN---MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQAS 412 (1015)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1015)
.|+....|....+. +...+.+....|||||+.+++..+. +..|.++|+.+++...
T Consensus 170 ~l~~~d~dg~~~~~---~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~------------------- 227 (419)
T PRK04043 170 NIVLADYTLTYQKV---IVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK------------------- 227 (419)
T ss_pred eEEEECCCCCceeE---EccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-------------------
Confidence 35555555543222 2222378899999999864443333 3569999998887554
Q ss_pred ccccCCCCEEEEEEccCCCEEEEEEC-C--CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC--
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYS-K--HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-- 487 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~las~~~-d--g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg-- 487 (1015)
+....+.+....|||||+.|+.... + ..|.++++.+++. + .+..+........|+|||+.+++.+ ...+
T Consensus 228 -lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~ 301 (419)
T PRK04043 228 -IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYP 301 (419)
T ss_pred -EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCc
Confidence 2234456677889999998876533 3 4678888877753 3 2343443344568999999633332 2333
Q ss_pred eEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCC---------CeEEEEeCCCCCceeeecCCCCceEEEE
Q 001776 488 VIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMA 558 (1015)
Q Consensus 488 ~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~ 558 (1015)
.|++.|+.+++..+.... ... ...|+| +|+.++..+.. ..|.+.|+.++.... +... .......
T Consensus 302 ~Iy~~dl~~g~~~rlt~~-g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~ 374 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFH-GKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPR 374 (419)
T ss_pred eEEEEECCCCCeEeCccC-CCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeE
Confidence 688888887776443221 111 235654 45666655543 367778887665433 3222 2333588
Q ss_pred ECCCCCEEEEEeeCCCCCceEEEEeCCCC
Q 001776 559 YSADGARLFSCGTNKEGESYLVEWNESEG 587 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d~~~~~~i~iwd~~~~ 587 (1015)
|+|||+.++..... .+...+.+.++...
T Consensus 375 ~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 375 FSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred ECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 99999999887754 33556777777543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-06 Score=106.89 Aligned_cols=243 Identities=15% Similarity=0.147 Sum_probs=158.2
Q ss_pred EEEEEccC-CCEEEEEECCCeEEEEEccCCceeeeeeEEec------------ccCceeEEEEecCCCceEEEEEeCCCe
Q 001776 422 NRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA------------HVGSVNDLAFSYPNKQLSVVTCGEDRV 488 (1015)
Q Consensus 422 ~~l~~spd-g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~------------h~~~V~~~~~s~~~~~~~l~s~s~dg~ 488 (1015)
..++++++ +..+++-+.++.|.+||.... .+..... .+ +-.....+++++++.. ++++-...+.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~-~g~~G~~dG~~~~a~f~~P~GIavd~~gn~-LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGS-TGEEGLRDGSFEDATFNRPQGLAYNAKKNL-LYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEcc-CCCcCCCCCchhccccCCCcEEEEeCCCCE-EEEEeCCCce
Confidence 46889875 556666677888999998643 2221111 01 1123578999998873 2344445678
Q ss_pred EEEEEcCCCceEEEeeCC-----------------CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC-
Q 001776 489 IKVWDAVTGTKQYIFEGH-----------------ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP- 550 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h-----------------~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~- 550 (1015)
|+++|..++. +.++.+- -..-..+++++. ++.++++.+.++.|++||..++.... +.+.
T Consensus 648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9999987654 3333210 012346777653 34677777888999999987643321 1110
Q ss_pred --------------CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCC------------C-------
Q 001776 551 --------------GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL------------G------- 597 (1015)
Q Consensus 551 --------------~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~------------~------- 597 (1015)
......++++|+++.|+++.. .+..|++||+.++.......+. .
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs---~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS---ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 123467999999997777653 2457999999876532111000 0
Q ss_pred -CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCC------------CCCCcceEEEcCCCCEEEEEeCCC
Q 001776 598 -KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG------------GLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 598 -~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~~dg 664 (1015)
-.....++++++|+.+++-..++.|++||..++....... .+ .......++++++|+++++-+.++
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 0123578899999988888899999999998876554332 11 112467899999999988888999
Q ss_pred cEEEEEccCC
Q 001776 665 GIKILANADG 674 (1015)
Q Consensus 665 ~i~iw~~~~~ 674 (1015)
.|++||+.++
T Consensus 881 ~Irvid~~~~ 890 (1057)
T PLN02919 881 LIRYLDLNKG 890 (1057)
T ss_pred EEEEEECCCC
Confidence 9999999887
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=105.80 Aligned_cols=175 Identities=18% Similarity=0.305 Sum_probs=130.1
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC-------CceeeecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-------GSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
+..|.||+..|..++-.... +.+++++.|++|++|.++.. .+..++..|..+|.++.|-.+.++++++
T Consensus 728 L~nf~GH~~~iRai~AidNE--NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE--NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccc--cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---
Confidence 45688999999888654333 57999999999999998643 2566788899999999999999999987
Q ss_pred CCCCceEEEEeCCCCeeeEEee-CCCCCCeEEEEEeCC--CCEEEEE-eCCCcEEEEeCCCCceeEEEec---CCCCCCc
Q 001776 573 KEGESYLVEWNESEGAVKRTYH-GLGKRSVGVVQFDTT--KNRFLAA-GDEFMIKFWDMDNVNLLASIDA---DGGLQAS 645 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~~~--~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~---~~~~~~v 645 (1015)
++.|.+||.--++++.... ....+.+..+..-++ ...++++ +...+|+++|.+.++....++. .+....+
T Consensus 803 ---D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~ 879 (1034)
T KOG4190|consen 803 ---DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT 879 (1034)
T ss_pred ---cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence 3349999988877765332 222223334444343 3444444 5888999999999887766643 2334568
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecC
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1015)
.+++..+.|++++.+-.+|+|.+.|.++| ..+..++.
T Consensus 880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G-~vINswrp 916 (1034)
T KOG4190|consen 880 RAIAVADKGNKLAAALSNGCIAILDARNG-KVINSWRP 916 (1034)
T ss_pred eEEEeccCcchhhHHhcCCcEEEEecCCC-ceeccCCc
Confidence 89999999999999999999999999999 55554443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-06 Score=94.35 Aligned_cols=196 Identities=11% Similarity=-0.008 Sum_probs=122.4
Q ss_pred CEEEEEEccCCCE-EEEEECC---CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC--CeEEEEE
Q 001776 420 SVNRVMWSPDGTL-FGVAYSK---HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWD 493 (1015)
Q Consensus 420 ~V~~l~~spdg~~-las~~~d---g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d--g~v~vwd 493 (1015)
.+....|||||+. ++..+.+ ..|.++|+.+++... +....+......|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 6654443 468889998876433 3335555677889999986 33444434 4688888
Q ss_pred cCCCceEEEeeCCCCCEEEEeecccCCccEEEEEe-CCC--eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEe
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
+.+++. ..+..+........|+|+ |+.|+..+ ..+ .|.++|+.++....... .+.. ...|+|||+.++...
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNFVED--DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred CCCCcE-EEcccCCCccCccEECCC--CCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEE
Confidence 877764 344434332233456554 45555544 334 57777877655533222 1212 248999999998877
Q ss_pred eCCC-----CCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCC
Q 001776 571 TNKE-----GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDN 629 (1015)
Q Consensus 571 ~d~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d---g~i~vwd~~~ 629 (1015)
...+ +...|.+.|+.++........ . ......|+|||+.++....+ ..+.+.++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 5432 224689999988865433322 1 22357899999988776632 2366667654
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-08 Score=101.44 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=108.6
Q ss_pred CCccEEEEccCCCEEEEEc-CCeEEEEeCCCCc----eeEEeCCCCCCeeEEEEcCCCCcEEEEE---EcCCeEEEEEcc
Q 001776 844 DAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----TMTTFMPPPPAATFLAFHPQDNNIIAIG---MEDSSIQIYNVR 915 (1015)
Q Consensus 844 ~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~----~~~~l~~~~~~i~~l~~sp~d~~~la~g---~~dg~v~vwd~~ 915 (1015)
..+..+..+++++++|++. +....++++.... +....... ..-+++.|.. +...+..+ ++...+.+|...
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~-~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIR-EDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeee-ccceEEEEeecCCceeeeeeccc
Confidence 3455677889999999998 5555566654322 23332222 2223344433 22333333 444566677666
Q ss_pred cceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE-
Q 001776 916 VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA- 994 (1015)
Q Consensus 916 ~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~- 994 (1015)
.+.+ ..+-||-..++.|+||||++++++++.|..|+|-.....-.+ -...-||. .-|..++.-++.. |++
T Consensus 141 ~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I----esfclGH~---eFVS~isl~~~~~-LlS~ 211 (390)
T KOG3914|consen 141 SGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI----ESFCLGHK---EFVSTISLTDNYL-LLSG 211 (390)
T ss_pred ccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch----hhhccccH---hheeeeeeccCce-eeec
Confidence 6544 345589999999999999999999999999999887763322 22334555 6789999887666 555
Q ss_pred EeCCeEEEEEcCCceEeccC
Q 001776 995 VHETQIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 995 ~~d~~i~vwd~~~g~~l~~~ 1014 (1015)
|+|++|++||+.+|+++..+
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred CCCCcEEEEecccCCccccc
Confidence 69999999999999998765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.2e-06 Score=80.71 Aligned_cols=247 Identities=11% Similarity=0.095 Sum_probs=137.8
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCC
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 440 (1015)
.++.+++|+ +||+ -.|..|.|=...+.-.....+.. +.+...-.=+.++||||+..||.+...|
T Consensus 2 ~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kcq--------------VpkD~~PQWRkl~WSpD~tlLa~a~S~G 65 (282)
T PF15492_consen 2 HLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKCQ--------------VPKDPNPQWRKLAWSPDCTLLAYAESTG 65 (282)
T ss_pred ceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEEe--------------cCCCCCchheEEEECCCCcEEEEEcCCC
Confidence 467788898 4444 46677777665443221111111 1333445567899999999999999999
Q ss_pred eEEEEEccCCceeeee--eEEe-cccCceeEEEEecCC-----CceEEEEEeCCCeEEEEEcCC-----CceEEEee--C
Q 001776 441 IVHLYTYHGGDELRNH--LEIE-AHVGSVNDLAFSYPN-----KQLSVVTCGEDRVIKVWDAVT-----GTKQYIFE--G 505 (1015)
Q Consensus 441 ~v~iwd~~~~~~~~~~--~~~~-~h~~~V~~~~~s~~~-----~~~~l~s~s~dg~v~vwd~~~-----~~~~~~~~--~ 505 (1015)
+|+++|+......... ..+. .-...|..+.|.+.. .. -|+.-..+|.++-+-+.. .+..++|. .
T Consensus 66 ~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 66 TIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred eEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 9999999865432100 0011 123467777776543 11 355566777776665432 23334443 2
Q ss_pred -CCCCEEEEeecccCCccEEEEEeCCCe-EEEEeCCCCCceeeecCCCCceEEEEE---CCCCCEEEEEeeCCCC--Cce
Q 001776 506 -HESPVYSICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAY---SADGARLFSCGTNKEG--ESY 578 (1015)
Q Consensus 506 -h~~~v~~i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~d~~~--~~~ 578 (1015)
+...|.++.+++.. ++|++|+.... -..+ ......+++-.. +|..+.+. ...+.-. ..+
T Consensus 145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~ 210 (282)
T PF15492_consen 145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKR 210 (282)
T ss_pred cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEcc-ccCccccccccc
Confidence 46789999998765 57776654322 0000 011111222111 12111111 1111100 001
Q ss_pred EEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001776 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
..+|.+-+.+... ..+.....|..+..+|||..|++...+|.|.+|++.+-++......+
T Consensus 211 ~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 211 RGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 2233332222211 12333447999999999999999999999999999988877776543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=99.05 Aligned_cols=164 Identities=16% Similarity=0.135 Sum_probs=114.2
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEE-
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA- 436 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~- 436 (1015)
.+..+..+|.++ ++|++..+....++++..... ..++|+.. .-...-+++.|-.+......+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~------------~v~~~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS------------CVPKRPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe------------ecccCcceeeeeeccceEEEEe
Confidence 344666778887 788888888877777765543 11111110 111233344454455554444
Q ss_pred --ECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe-eCCCCCEEEE
Q 001776 437 --YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSI 513 (1015)
Q Consensus 437 --~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~h~~~v~~i 513 (1015)
+....+.+|+...+.+. .+-||-..++.++|+||++ +|+++..|..|++-....-..+..| -||+..|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44455666666654332 4568999999999999999 8999999999999887666555554 5799999999
Q ss_pred eecccCCccEEEEEeCCCeEEEEeCCCCCceeee
Q 001776 514 CPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY 547 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 547 (1015)
+..+. ..|++++.|+++++||+.+++....+
T Consensus 201 sl~~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 201 SLTDN---YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eeccC---ceeeecCCCCcEEEEecccCCccccc
Confidence 97543 57999999999999999998877443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-06 Score=84.11 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=107.1
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE
Q 001776 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1015)
Q Consensus 421 V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 500 (1015)
+.++++++|++++++.+....|..|.++...............+.=.+..|+.... .+|++..||++.|||++.....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp 238 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP 238 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence 88999999999999999999999999876543322223334445567889998887 7999999999999999875443
Q ss_pred E-----EeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC--------ceEEEEECCCCCEEE
Q 001776 501 Y-----IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH--------SSTMMAYSADGARLF 567 (1015)
Q Consensus 501 ~-----~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~ 567 (1015)
. +-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|+++............ .|....|+.++..+.
T Consensus 239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~ 318 (344)
T KOG4532|consen 239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND 318 (344)
T ss_pred hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence 3 224588999999998765556677666668899999998765443322221 256666766666655
Q ss_pred EEe
Q 001776 568 SCG 570 (1015)
Q Consensus 568 ~~~ 570 (1015)
+..
T Consensus 319 v~~ 321 (344)
T KOG4532|consen 319 VKN 321 (344)
T ss_pred ccc
Confidence 554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.3e-06 Score=82.66 Aligned_cols=253 Identities=15% Similarity=0.193 Sum_probs=154.3
Q ss_pred eeEEEeccCCCeEEEEEecCCe-EEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE
Q 001776 359 VKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1015)
Q Consensus 359 V~~~~~sp~g~~lla~g~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 437 (1015)
...++.+|.....++.+-.-|+ ..+||..+++...... .-....+.|| -.||+||++|.+.-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTE 69 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTE 69 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEec
Confidence 3478889977668888888775 8899999998775411 1112234555 58999999999874
Q ss_pred C-----CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEE
Q 001776 438 S-----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 438 ~-----dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
. .|.|-|||...+ +....++..|.-.-..+.+.|||+. |+.+. |-|.- ..++|+....+..-.
T Consensus 70 nd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~t--LvVAN--GGI~T-hpd~GR~kLNl~tM~----- 137 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGET--LVVAN--GGIET-HPDSGRAKLNLDTMQ----- 137 (305)
T ss_pred cccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCE--EEEEc--CCCcc-CcccCceecChhhcC-----
Confidence 3 578999999832 4455577777777788999999984 44431 11211 112233222221111
Q ss_pred EeecccCCccEEEEEeCCCe-EEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC---CceEEEEeCCCCe
Q 001776 513 ICPHHKENIQFIFSTATDGK-IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG---ESYLVEWNESEGA 588 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~---~~~i~iwd~~~~~ 588 (1015)
+ .+.+.-..+|. +--|.+.. ..+...|.-+++.++|..++..-..++. -..+.+++. +.
T Consensus 138 ------p--sL~~ld~~sG~ll~q~~Lp~-------~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~ 200 (305)
T PF07433_consen 138 ------P--SLVYLDARSGALLEQVELPP-------DLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GG 200 (305)
T ss_pred ------C--ceEEEecCCCceeeeeecCc-------cccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CC
Confidence 1 12222122232 22222210 2244578889999999877766543331 223444443 33
Q ss_pred eeEEeeCC------CCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 589 VKRTYHGL------GKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 589 ~~~~~~~~------~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
....+... -...+-+|++++++..+++.+ ..+.+.+||..+++.+...... .+..++-.+++ ++++.+
T Consensus 201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG 275 (305)
T ss_pred cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC
Confidence 23333221 123788999999999887777 7789999999999999887643 45567766666 555544
Q ss_pred C
Q 001776 662 N 662 (1015)
Q Consensus 662 ~ 662 (1015)
.
T Consensus 276 ~ 276 (305)
T PF07433_consen 276 Q 276 (305)
T ss_pred C
Confidence 3
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.4e-06 Score=83.49 Aligned_cols=253 Identities=13% Similarity=0.163 Sum_probs=148.0
Q ss_pred eEEEEECCCCC-EEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeE-EEEEeCCCCEEEEEe-----CCCcEEEEe
Q 001776 554 STMMAYSADGA-RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG-VVQFDTTKNRFLAAG-----DEFMIKFWD 626 (1015)
Q Consensus 554 i~~~~~s~~~~-~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~-~v~~~~~~~~l~~~~-----~dg~i~vwd 626 (1015)
...++.+|... .++.+-..+ ....+||..+++....+....+...+ -.+|++||++|++.- ..|.|-|||
T Consensus 7 gH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34578888544 444444333 36899999999988877655442222 357999999999864 467899999
Q ss_pred CC-CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccc
Q 001776 627 MD-NVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTF 705 (1015)
Q Consensus 627 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1015)
.. +.+.+..+..++ -.-..+.+.|||+.|+++ +|-|.- ..+++...+..-..
T Consensus 84 ~~~~~~ri~E~~s~G--IGPHel~l~pDG~tLvVA--NGGI~T-hpd~GR~kLNl~tM---------------------- 136 (305)
T PF07433_consen 84 AARGYRRIGEFPSHG--IGPHELLLMPDGETLVVA--NGGIET-HPDSGRAKLNLDTM---------------------- 136 (305)
T ss_pred CcCCcEEEeEecCCC--cChhhEEEcCCCCEEEEE--cCCCcc-CcccCceecChhhc----------------------
Confidence 98 566677776543 234678899999888876 233321 11112111100000
Q ss_pred cccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEc
Q 001776 706 GSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYT 785 (1015)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 785 (1015)
+..+.+.-..+| .......++...|...|+.+++.
T Consensus 137 --------------------------------~psL~~ld~~sG-------------~ll~q~~Lp~~~~~lSiRHLa~~ 171 (305)
T PF07433_consen 137 --------------------------------QPSLVYLDARSG-------------ALLEQVELPPDLHQLSIRHLAVD 171 (305)
T ss_pred --------------------------------CCceEEEecCCC-------------ceeeeeecCccccccceeeEEec
Confidence 000000101111 12223333334477889999999
Q ss_pred CCCcEEEEeccCcE-------EEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEE
Q 001776 786 NSGLAILALASNAV-------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYV 858 (1015)
Q Consensus 786 ~dg~~l~~~~~dg~-------i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~l 858 (1015)
++|..++..-..|. +-+++. ...+.+.+....... .-..-+-++++++++.++
T Consensus 172 ~~G~V~~a~Q~qg~~~~~~PLva~~~~-------------g~~~~~~~~p~~~~~-------~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 172 GDGTVAFAMQYQGDPGDAPPLVALHRR-------------GGALRLLPAPEEQWR-------RLNGYIGSIAADRDGRLI 231 (305)
T ss_pred CCCcEEEEEecCCCCCccCCeEEEEcC-------------CCcceeccCChHHHH-------hhCCceEEEEEeCCCCEE
Confidence 99985555443321 111110 000111111111111 135678899999999999
Q ss_pred EEEc--CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEc
Q 001776 859 MSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905 (1015)
Q Consensus 859 a~~s--dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~ 905 (1015)
++.+ .+.+.+||..+++.+.... -..+..++-.+ ++ ++++.+.
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~-~~-f~~ssG~ 276 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTD-DG-FLVSSGQ 276 (305)
T ss_pred EEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecC-Cc-eEEeCCC
Confidence 8888 7899999999999887654 34567777776 55 6665443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=89.09 Aligned_cols=209 Identities=14% Similarity=0.206 Sum_probs=126.3
Q ss_pred eeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC
Q 001776 359 VKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1015)
Q Consensus 359 V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~ 438 (1015)
|+.+.|+.+- .|+++..++.+.......+.+... |+-... .-+..++..|+++-.+-+.+--++.+++++.
T Consensus 39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccC--cCceeeeeccCCCCCcccccccCCceEecCC
Confidence 6667776654 578888888777776655544321 111111 1111123345555445555556788999999
Q ss_pred CCeEEEEEccCCceeeeeeEEe-cccCceeEEEEecCCCceEEEEEe-----CCCeEEEEEcCCCceEEEeeCCCCCEEE
Q 001776 439 KHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCG-----EDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
||.+.+.+.+.-..+. ..+. .|.+.. +.+....+. .+.++. .-+..+.|+++..+.+..-......|.+
T Consensus 110 dg~~~v~s~~~~~~~~--~~i~~~~~~~a-s~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALM--SRIPSIHSGSA-SRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred CceEEEEechHHHhhh--hhccccccccc-ccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 9999999987622111 1111 122221 222333444 333322 1234556665543332211112234888
Q ss_pred EeecccCCccEEEEEeCCCeEEEEeCCCCCcee-eecCCCCceEEEEECC-CCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
++-+|.+. +.+++|+.||.+.+||.+....+. .+..|..+++.+-|+| ++..|++++.|| .++.||..+
T Consensus 185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG----slw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG----SLWHWDAST 255 (319)
T ss_pred hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCC----cEEEEcCCC
Confidence 98888765 688999999999999999875433 4567888999999999 567899998766 499999654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.5e-06 Score=91.40 Aligned_cols=309 Identities=11% Similarity=0.091 Sum_probs=166.6
Q ss_pred cEEEEEeCCCeEEEEeCCCCCceeeecCCCC-ce-E-----EEEECC--CCCEEEEEeeCCCCCceEEEEeCCCCeeeEE
Q 001776 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH-SS-T-----MMAYSA--DGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~i-~-----~~~~s~--~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~ 592 (1015)
..+++++.++.+..+|..+++.......... .. . .+.-.| ++..++.++. ++.++.+|.++|+.+-+
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----CCEEEEEECCCCCCccc
Confidence 3666777777777788777776655443221 00 0 000011 3455666543 34699999999998877
Q ss_pred eeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC---cceEEEcCCCCEEEEEeCCCcEEEE
Q 001776 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA---SPCIRFNKEGILLAVSTNDNGIKIL 669 (1015)
Q Consensus 593 ~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---v~~v~~s~~~~~l~~~~~dg~i~iw 669 (1015)
...... ........ +..++.+..+|.++.+|..+|+.+-.......... ...... .+..++.++.+|.+..+
T Consensus 146 ~~~~~~-~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~ 220 (394)
T PRK11138 146 TKVAGE-ALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAV 220 (394)
T ss_pred ccCCCc-eecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEE
Confidence 654432 11111222 45677788899999999999998877754311000 011111 23456677788999999
Q ss_pred EccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccccc
Q 001776 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE 749 (1015)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 749 (1015)
|..+|+.....-..... + .. .
T Consensus 221 d~~~G~~~W~~~~~~~~----------------------------------------------------~------~~-~ 241 (394)
T PRK11138 221 LMEQGQLIWQQRISQPT----------------------------------------------------G------AT-E 241 (394)
T ss_pred EccCChhhheeccccCC----------------------------------------------------C------cc-c
Confidence 98888432221000000 0 00 0
Q ss_pred ceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCC
Q 001776 750 KSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829 (1015)
Q Consensus 750 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~ 829 (1015)
.-+++++ ...++ + .+..+++++.+|.+..+|..++. .+|....
T Consensus 242 ~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~-------------~~W~~~~ 284 (394)
T PRK11138 242 IDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ-------------IVWKREY 284 (394)
T ss_pred hhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC-------------EEEeecC
Confidence 0000000 00000 0 12234455556666655543211 1232211
Q ss_pred CccccccCCCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCC-CCeeEEEEcCCCCcEEEEEEcCC
Q 001776 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDS 907 (1015)
Q Consensus 830 ~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~-~~i~~l~~sp~d~~~la~g~~dg 907 (1015)
+ ....+.. ++..+..++ +|.+..+|..+|+.+-...... ....+.... + ..|+.++.||
T Consensus 285 ~--------------~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G 345 (394)
T PRK11138 285 G--------------SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEG 345 (394)
T ss_pred C--------------CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CEEEEEeCCC
Confidence 1 0111222 344444444 8999999999988765443211 122333332 3 4677889999
Q ss_pred eEEEEEcccceEEEEEcCccCCeEE-EEEeCCCCEEEEEeCCCcEEEEEc
Q 001776 908 SIQIYNVRVDEVKTKLKGHQKRITG-LAFSNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 908 ~v~vwd~~~~~~~~~l~~h~~~v~~-l~~spdg~~l~s~s~dg~v~vWd~ 956 (1015)
.|+..|..+|+.+...+-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 346 YLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999999999988877543333332 222 2457888999999887764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-06 Score=81.11 Aligned_cols=238 Identities=10% Similarity=0.021 Sum_probs=154.8
Q ss_pred EEEEcc-----CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 423 RVMWSP-----DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 423 ~l~~sp-----dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
.+.|.| ...+||.|+..|...+|...+.+.... ....|...|+-+.=..|.+. -+..++.|.++++.++.-+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~--~cd~snn~v~~~~r~cd~~~-~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY--QCDVSNNDVTLVKRYCDLKF-PLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCccccee--eecccccchhhhhhhccccc-ceeeccCCcceeEEEEecC
Confidence 355555 456899999999999999987653322 23345554443333333333 4677888889998887654
Q ss_pred ceEEEeeCCCC--CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee---ecCCCCceEEEEECCCCCEEEEEeeC
Q 001776 498 TKQYIFEGHES--PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 498 ~~~~~~~~h~~--~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
..-... |.. .+.++.+++ +++++++.+....|..|.++....... .......-.+..|+.....++++..|
T Consensus 149 s~~~~~--h~~~~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 149 SNKFAV--HNQNLTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred ccccee--eccccceeeeEEcC--CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 332222 333 266676654 448999999999999999987655332 22223345678899999999999875
Q ss_pred CCCCceEEEEeCCCCeeeE----EeeCCCCCCeEEEEEeCCC--CEEEEEeCCCcEEEEeCCCCceeEEEecCCC-----
Q 001776 573 KEGESYLVEWNESEGAVKR----TYHGLGKRSVGVVQFDTTK--NRFLAAGDEFMIKFWDMDNVNLLASIDADGG----- 641 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~----~~~~~~~~~i~~v~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----- 641 (1015)
+ ++.+||++...... .-+.++.+.++.+.|++.| ..|+..-.-+.+.+-|++++...+.+.....
T Consensus 225 g----~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~ 300 (344)
T KOG4532|consen 225 G----TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKH 300 (344)
T ss_pred C----cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccc
Confidence 5 69999998654322 2334556689999999876 3455555667899999999987776654321
Q ss_pred -CCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 642 -LQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 642 -~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
...+....|+.++.-+.+.+++ .+.=|++.
T Consensus 301 ~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 301 NTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cccccccccccCCCcccccccch-hhheeecc
Confidence 1336666777766655555444 34445443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.8e-07 Score=90.84 Aligned_cols=249 Identities=14% Similarity=0.231 Sum_probs=163.2
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCc--eeeeeeEEeccc------------CceeEEEEecCCCceEEEE
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHV------------GSVNDLAFSYPNKQLSVVT 482 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~--~~~~~~~~~~h~------------~~V~~~~~s~~~~~~~l~s 482 (1015)
....|+++.|...|.||++|...|.|.+|.-.... ..+-+.++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999999999999999999999765432 122233455664 3578889987776556778
Q ss_pred EeCCCeEEEEEcCCCc-------------------e------------------E-----EEe-eCCCCCEEEEeecccC
Q 001776 483 CGEDRVIKVWDAVTGT-------------------K------------------Q-----YIF-EGHESPVYSICPHHKE 519 (1015)
Q Consensus 483 ~s~dg~v~vwd~~~~~-------------------~------------------~-----~~~-~~h~~~v~~i~~~~~~ 519 (1015)
.+.|.+|++|.+.... . + +.+ ..|...|.++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 8899999999875331 0 0 001 2466667788776543
Q ss_pred CccEEEEEeCCCeEEEEeCCCCCceee---ecCCCC-----ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeee-
Q 001776 520 NIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGH-----SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK- 590 (1015)
Q Consensus 520 ~~~~l~s~~~dg~i~vwd~~~~~~~~~---~~~~~~-----~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~- 590 (1015)
..++ .+.|-.|.+|+++....... ...+.- -|++..|+|....++.-+. ..+.|++-|++...+.
T Consensus 185 --et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 185 --ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred --heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4444 45678899999876544332 222221 5788889996544433332 2446999998843211
Q ss_pred ---EE----eeCC-------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCC----------CCCCc
Q 001776 591 ---RT----YHGL-------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADG----------GLQAS 645 (1015)
Q Consensus 591 ---~~----~~~~-------~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~----------~~~~v 645 (1015)
.. +.+. --..|..+.|+++|+++++-+. -+|++||.+.. .++.++..|. ....|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 11 1110 0125778899999999988765 48999999754 4666664431 01122
Q ss_pred ---ceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 646 ---PCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 646 ---~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
..+.|+.|...+.+|+..+..-++-..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 257888899999999988888887643
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.2e-07 Score=99.43 Aligned_cols=293 Identities=11% Similarity=0.166 Sum_probs=186.5
Q ss_pred EEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCc-ceEeEeeeEEEeccCCCccccccccccCC--CCEEEEEEc
Q 001776 351 MTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSR-ERIAVKSFKVWELGACSMPLQASLSSDYT--ASVNRVMWS 427 (1015)
Q Consensus 351 ~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s 427 (1015)
..++-.+++.++..+|.|+.+ |.++.-| +.+-|+... ...+ ...|. -.|-.+.||
T Consensus 19 lsl~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~ppr--------------------~l~h~tpw~vad~qws 76 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPPR--------------------WLHHITPWQVADVQWS 76 (1081)
T ss_pred eEEEecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCce--------------------eeeccCcchhcceecc
Confidence 445667889999999999854 5555555 455555432 1111 11122 346677888
Q ss_pred cCC--CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-eEEEee
Q 001776 428 PDG--TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE 504 (1015)
Q Consensus 428 pdg--~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~ 504 (1015)
|.. .+-++......-.+|++.....-.....+.+|...|+.+.|.|.... .+++++.|..+..||+++.. .+..+.
T Consensus 77 ~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 77 PHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred cCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeee
Confidence 743 34444444555688988754433334467899999999999999887 79999999999999998754 445554
Q ss_pred CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce-eeecCCCCceEEEEECCC-CCEEEEEeeCCCCCceEEEE
Q 001776 505 GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 505 ~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~~~~~i~iw 582 (1015)
.-...-..+.|+... ..+.+.+..+.|++||.+.+... ..+.++...++.++|..- ...+.+++. ++++..|
T Consensus 156 ~w~s~asqVkwnyk~--p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~----d~tvkfw 229 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKD--PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN----DGTVKFW 229 (1081)
T ss_pred cccccCceeeecccC--cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC----CCceeee
Confidence 444455667887654 34555666788999999987654 456666667788877653 334555544 4579999
Q ss_pred eCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe--CCCcEEEEe---------CCC-CceeEEEecCCCCCCcceEEE
Q 001776 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG--DEFMIKFWD---------MDN-VNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 583 d~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~--~dg~i~vwd---------~~~-~~~~~~~~~~~~~~~v~~v~~ 650 (1015)
|................++..-++.|-|.-.++-- .+..+.+++ ..+ .+++..+.+| .+.|....|
T Consensus 230 ~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH--~D~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH--DDVVLEFLW 307 (1081)
T ss_pred cccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc--chHHHHHhh
Confidence 98765443333333333566666666554333211 222344433 322 3466777765 556655555
Q ss_pred cCC----------CCEEEEEeCCCcEEEEEccCC
Q 001776 651 NKE----------GILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 651 s~~----------~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
-.. .-.|++-+.|..+++|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 332 236899999999999988653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-05 Score=81.99 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=139.8
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEe-cCCCceEEEEEeCCCeEEEEEcCCCceE
Q 001776 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS-YPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1015)
Q Consensus 423 ~l~~sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s-~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 500 (1015)
+++|.+ ++.++++--..+.|..|+..++.... +.... ...+++. +++. ++.+..++ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~~--~~G~~~~~~~g~---l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLPG--PNGMAFDRPDGR---LYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESSS--EEEEEEECTTSE---EEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecCC--CceEEEEccCCE---EEEEEcCc-eEEEecCCCcEE
Confidence 578888 66677776678999999998875322 22122 6777888 6654 55656554 455598888654
Q ss_pred EEeeC-----CCCCEEEEeecccCCccEEEEEeCC--------CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEE
Q 001776 501 YIFEG-----HESPVYSICPHHKENIQFIFSTATD--------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 501 ~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
..... .....+.+++.+ +|++.++.... |.|..++.. .+ .......-...+.++|+|+++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~--~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDP--DGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-T--TS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEEcC--CCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 43332 234567788755 45666655433 456666665 23 222222344678999999999888
Q ss_pred EEeeCCCCCceEEEEeCCCCe--e--eEEeeC-CCC-CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCC
Q 001776 568 SCGTNKEGESYLVEWNESEGA--V--KRTYHG-LGK-RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG 641 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~--~--~~~~~~-~~~-~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 641 (1015)
++.. ....|..+++.... . ...+.. ... .....+++..+|+..++....+.|.++|.. |+.+..+...
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-- 223 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-- 223 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--
Confidence 7653 34568888875321 1 222221 111 136789999999988887788999999987 8888888876
Q ss_pred CCCcceEEEc-CCCCEEEEEe
Q 001776 642 LQASPCIRFN-KEGILLAVST 661 (1015)
Q Consensus 642 ~~~v~~v~~s-~~~~~l~~~~ 661 (1015)
...+++++|. ++...|+..+
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEe
Confidence 3478999994 5666665443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=111.99 Aligned_cols=215 Identities=16% Similarity=0.218 Sum_probs=157.0
Q ss_pred cccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC-CC-eEEE
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DR-VIKV 491 (1015)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~-dg-~v~v 491 (1015)
+..|....+|++||-+.++|++|+..|.|+++++.+|.... ...+|..+|+.+.=+.||.. +++.+. .. -..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 67889999999999999999999999999999999998665 67899999999999999994 444333 32 5679
Q ss_pred EEcCC-CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC----CCceEEEEECCCCCEE
Q 001776 492 WDAVT-GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP----GHSSTMMAYSADGARL 566 (1015)
Q Consensus 492 wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l 566 (1015)
|++.+ +...++|.+ -.++.|+... ..-+.|+.-....+||+.+.....++-.. ...-+...|+|+...+
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 99764 555566653 2346665543 23344444456789999998776653221 1133678899999887
Q ss_pred EEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcc
Q 001776 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASP 646 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 646 (1015)
+-- =.+||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+++.....- .-.
T Consensus 1246 lnd---------GvLWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L----dqc 1305 (1516)
T KOG1832|consen 1246 LND---------GVLWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL----DQC 1305 (1516)
T ss_pred eeC---------ceeeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccc----cce
Confidence 743 24899998887777765442 122369999999998775 9999999988777542 225
Q ss_pred eEEEcCCCCEEEE
Q 001776 647 CIRFNKEGILLAV 659 (1015)
Q Consensus 647 ~v~~s~~~~~l~~ 659 (1015)
.|.|+..|..+..
T Consensus 1306 ~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1306 AVTFNSTGDVMYA 1318 (1516)
T ss_pred EEEeccCccchhh
Confidence 7888888876653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-05 Score=87.11 Aligned_cols=190 Identities=14% Similarity=0.048 Sum_probs=113.4
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCC-CE-E-----EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES-PV-Y-----SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG 551 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~-~v-~-----~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 551 (1015)
.++.++.++.+.-+|.++|+.+.+...... .. . .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 477788889999999999998876643220 00 0 0000011112467788899999999999988877765543
Q ss_pred CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCC----eEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001776 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRS----VGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (1015)
Q Consensus 552 ~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~----i~~v~~~~~~~~l~~~~~dg~i~vwd~ 627 (1015)
....+... .+..++++.. ++.+..+|..+|+.+-.+....... ...... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v--~~~~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV--SDGLVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE--ECCEEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 22111122 1334555433 4469999999999887765432100 011111 1345777788999999999
Q ss_pred CCCceeEEEecCCCC--C---CcceEEEcC--CCCEEEEEeCCCcEEEEEccCCce
Q 001776 628 DNVNLLASIDADGGL--Q---ASPCIRFNK--EGILLAVSTNDNGIKILANADGIR 676 (1015)
Q Consensus 628 ~~~~~~~~~~~~~~~--~---~v~~v~~s~--~~~~l~~~~~dg~i~iw~~~~~~~ 676 (1015)
.+|+.+-........ . ....+.-+| .+..++.++.+|.+..+|..+|+.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 999876554321100 0 011111222 345677777889999999888843
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-05 Score=76.60 Aligned_cols=232 Identities=9% Similarity=0.107 Sum_probs=131.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEEccCCc--eeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE
Q 001776 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGD--ELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ 500 (1015)
Q Consensus 423 ~l~~spdg~~las~~~dg~v~iwd~~~~~--~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~ 500 (1015)
.++.+.||+.||+- .|..|.|=..++.- .+.+....+...-.-..++||||+. +||.+...|+|+++|+.. ..+
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t--lLa~a~S~G~i~vfdl~g-~~l 77 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT--LLAYAESTGTIRVFDLMG-SEL 77 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc--EEEEEcCCCeEEEEeccc-cee
Confidence 36778899999877 45556666554421 1121111222223457899999999 899999999999999754 444
Q ss_pred EEeeCC-------CCCEEEEeecccCC----ccEEEEEeCCCeEEEEeCCCC-----CceeeecC---CCCceEEEEECC
Q 001776 501 YIFEGH-------ESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNL-----GSRVDYDA---PGHSSTMMAYSA 561 (1015)
Q Consensus 501 ~~~~~h-------~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~---~~~~i~~~~~s~ 561 (1015)
..+..- ...|..+.|..... ...|++...+|.++-|-+..+ .....+.. ....|.++.++|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 444321 24455565543221 124666677777777765321 12222222 245899999999
Q ss_pred CCCEEEEEeeCCCCCc-------eEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001776 562 DGARLFSCGTNKEGES-------YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 562 ~~~~l~~~~~d~~~~~-------~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
..+.|+++|.....++ -+..|.+-++.+-... ..+.+...-... .+..+|.+-+.+...
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~-----------v~~~~~~~~~~~---~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ-----------VTSSEDDITASS---KRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-----------ccccCccccccc---cccceeeccceeeee
Confidence 9999988875432211 1233332222211110 001100110000 112334333322222
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
... .....|..|..||||+.||+...+|.|.+|++.+-
T Consensus 224 ~~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 224 RQG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111 22567899999999999999999999999999876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=88.67 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=72.8
Q ss_pred CCCccEEEEccCCCEEEEEc--CCeEEEEeCCCCce------------eEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCe
Q 001776 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~------------~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~ 908 (1015)
......+++||||+++++++ +.+|.|.|+.+.+. +.+..- ...-...+|.+ +|....+-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecce
Confidence 45677899999999999887 79999999987553 233322 22335678998 7888888899999
Q ss_pred EEEEEccc----------ceEEEEEcCccCCeE-----EEEEeCCCCEEEEEeC
Q 001776 909 IQIYNVRV----------DEVKTKLKGHQKRIT-----GLAFSNTLNVLVSSGA 947 (1015)
Q Consensus 909 v~vwd~~~----------~~~~~~l~~h~~~v~-----~l~~spdg~~l~s~s~ 947 (1015)
|..||+.. ...+..+.-|-.+.- .=.-.|||++|++...
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 99999986 345555554433221 1123689999998643
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-06 Score=88.85 Aligned_cols=267 Identities=12% Similarity=0.105 Sum_probs=170.0
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE-ecCCCCCCcceEEEcCCCCEEEEEeC-CCcEEEEEccCCcee
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI-DADGGLQASPCIRFNKEGILLAVSTN-DNGIKILANADGIRL 677 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iw~~~~~~~~ 677 (1015)
.|+.+. ....+++++++.||.++.|.-..-.-+.-+ ..+.|...+.+++.+-+|.++++.+. |..++++|+.+- ..
T Consensus 11 ~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-Dm 88 (558)
T KOG0882|consen 11 VITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-DM 88 (558)
T ss_pred eeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-ch
Confidence 444443 334579999999999999976542222221 12234667888899999999999887 999999999765 22
Q ss_pred eeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeec
Q 001776 678 LRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLT 757 (1015)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~ 757 (1015)
+..+...... .+..+-. -.++ +....-++.-.++.+.++|-.
T Consensus 89 inmiKL~~lP-------------g~a~wv~---------------------skGd----~~s~IAVs~~~sg~i~VvD~~ 130 (558)
T KOG0882|consen 89 INMIKLVDLP-------------GFAEWVT---------------------SKGD----KISLIAVSLFKSGKIFVVDGF 130 (558)
T ss_pred hhhcccccCC-------------CceEEec---------------------CCCC----eeeeEEeecccCCCcEEECCc
Confidence 2222111000 0000000 0000 001122334455677777754
Q ss_pred cccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccC
Q 001776 758 EITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDI 837 (1015)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l 837 (1015)
....+.. .....|..+|..+.+.+.+..+++....|.|..|.....-..|..+ ..|.+....-+....
T Consensus 131 ~d~~q~~-----~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~-------l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 131 GDFCQDG-----YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTN-------LNFELKHETDLYGFP 198 (558)
T ss_pred CCcCccc-----eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccc-------ccccccccchhhccc
Confidence 3221111 1113488999999999999999999999999999876422222222 234444444333222
Q ss_pred CCCCCCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCC--------------------------------CC
Q 001776 838 SDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMP--------------------------------PP 884 (1015)
Q Consensus 838 ~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~--------------------------------~~ 884 (1015)
+ ......++.|+|+|..+++-+ |.+|+++++.+|+.++.+.. |.
T Consensus 199 K---~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 199 K---AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred c---cccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 2 567788999999999999888 89999999999887765431 11
Q ss_pred -CCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEE
Q 001776 885 -PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL 923 (1015)
Q Consensus 885 -~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l 923 (1015)
..-+.+.|.. .+++|+.|+-=| |+|.++.++++++.+
T Consensus 276 ~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 276 STVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred CcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 1234566777 888999887666 999999999887776
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.9e-05 Score=71.07 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=96.9
Q ss_pred EeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeE
Q 001776 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (1015)
Q Consensus 363 ~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v 442 (1015)
..-+|.+.+++.|+..+.+.--|..+|+..-. .--...|.+-+.- -|++++.|+..|.+
T Consensus 17 VV~~dskT~v~igSHs~~~~avd~~sG~~~We--------------------~ilg~RiE~sa~v-vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 17 VVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWE--------------------AILGVRIECSAIV-VGDFVVLGCYSGGL 75 (354)
T ss_pred EEecCCceEEEEecCCceEEEecCCCCcEEee--------------------hhhCceeeeeeEE-ECCEEEEEEccCcE
Confidence 33455566899999999999999999986543 1122334333332 57889999999999
Q ss_pred EEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCcc
Q 001776 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQ 522 (1015)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 522 (1015)
++.+.++|.....+..+..-. ......+++. ++..|+.|++.+..|.++..++...+...+...+-+..+. + .
T Consensus 76 Yfl~~~tGs~~w~f~~~~~vk---~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g-~-~ 148 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETVK---VRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG-D-G 148 (354)
T ss_pred EEEEecchhheeeeeehhhhc---cceEEcCCCc--eEEEecCCCcEEEecccccceEEecccCCceeccceecCC-C-c
Confidence 999999997776443332211 1223456777 8999999999999999999999876643332222233332 2 2
Q ss_pred EEEEEeCCCeEEEEeC
Q 001776 523 FIFSTATDGKIKAWLY 538 (1015)
Q Consensus 523 ~l~s~~~dg~i~vwd~ 538 (1015)
.|+.+...|.+.--..
T Consensus 149 sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 149 SLYAAITAGAVLAVTK 164 (354)
T ss_pred eEEEEeccceEEEEcc
Confidence 4555555565544433
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=93.45 Aligned_cols=165 Identities=15% Similarity=0.091 Sum_probs=123.3
Q ss_pred EEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCe
Q 001776 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHI 441 (1015)
Q Consensus 362 ~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~ 441 (1015)
++||-+-.-+-++.+.+-.|-+-|+++|-... + ..++.|.++.|...+.++..|+.+|.
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f-~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------F-QSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc--------------------c-ccchhHHHHHhcccCCeeEecccCCc
Confidence 37765433233444556778899998875432 2 26688999999999999999999999
Q ss_pred EEEEEccCCce--eeeeeEEecccCceeEEEEec-CCCceEEEEEeCCCeEEEEEcCCCce---EEEeeCCCCCEEEEee
Q 001776 442 VHLYTYHGGDE--LRNHLEIEAHVGSVNDLAFSY-PNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVYSICP 515 (1015)
Q Consensus 442 v~iwd~~~~~~--~~~~~~~~~h~~~V~~~~~s~-~~~~~~l~s~s~dg~v~vwd~~~~~~---~~~~~~h~~~v~~i~~ 515 (1015)
|..+|++.+.. ..+. .---|...|+++..-. +++ +|.+.+.+|.|++||.+--++ +.++.||-..-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~ 352 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA 352 (425)
T ss_pred EEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence 99999986511 1111 1123999999998877 455 799999999999999986666 8999999766655555
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC
Q 001776 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (1015)
Q Consensus 516 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 550 (1015)
+-++....+++++.|...++|.++.+....+....
T Consensus 353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 55665578999999999999999987766655443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.5e-07 Score=87.11 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=108.2
Q ss_pred CCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCc---eeEEeCCCC-----CCeeEEEEcCCCCcEEEEEEcCCeEEEE
Q 001776 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMTTFMPPP-----PAATFLAFHPQDNNIIAIGMEDSSIQIY 912 (1015)
Q Consensus 841 ~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~---~~~~l~~~~-----~~i~~l~~sp~d~~~la~g~~dg~v~vw 912 (1015)
.|...+.++.|..|...++++.|-.|.+|+++-.. .+..+..|. .-|++..|+|.....+...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 48888999999999999999999999999986422 222334443 2488999999777788888999999999
Q ss_pred EcccceE------EE--EE--------cCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCc--
Q 001776 913 NVRVDEV------KT--KL--------KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRT-- 974 (1015)
Q Consensus 913 d~~~~~~------~~--~l--------~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~-- 974 (1015)
|++...+ +. ++ .+-...|..+.|+++|+|+++-+.- +|++||+...+.. +....-|.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~p----ikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNP----IKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCC----ceeechHHHH
Confidence 9973211 10 11 1223468889999999999987654 6999999875421 11111110
Q ss_pred -------cccCCc---eEEEEccCCCEEEEE-eCCeEEEEE
Q 001776 975 -------ASALAD---TRVQFHLDQTHLLAV-HETQIAIYE 1004 (1015)
Q Consensus 975 -------~~~~~v---~~l~fs~dg~~l~~~-~d~~i~vwd 1004 (1015)
...++| ..+.||-|.+.+++| -.+..-+|-
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 011223 358899998888886 444444444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-05 Score=80.27 Aligned_cols=221 Identities=12% Similarity=0.061 Sum_probs=137.9
Q ss_pred CCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeee
Q 001776 378 MGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHL 457 (1015)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~ 457 (1015)
+|+|..||..+|+.+-...+ ..-.....+. ..+++..+++++.++.+..||..+|+.+...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-----------------~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~- 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-----------------GPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF- 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------------SSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred CCEEEEEECCCCCEEEEEEC-----------------CCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence 68899999999987654221 1101122211 3346777888899999999999999876633
Q ss_pred EEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe-eCCCC---CEEEEeecccCCccEEEEEeCCCeE
Q 001776 458 EIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHES---PVYSICPHHKENIQFIFSTATDGKI 533 (1015)
Q Consensus 458 ~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~h~~---~v~~i~~~~~~~~~~l~s~~~dg~i 533 (1015)
.. .+.+...... ++. .++.++.++.++.+|..+|+.+... ..... .......... +..++.+..++.|
T Consensus 63 --~~-~~~~~~~~~~-~~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l 134 (238)
T PF13360_consen 63 --DL-PGPISGAPVV-DGG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL 134 (238)
T ss_dssp --EC-SSCGGSGEEE-ETT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred --ec-cccccceeee-ccc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence 22 2221111222 344 4677778889999999999999884 43211 1111222222 3578888889999
Q ss_pred EEEeCCCCCceeeecCCCCc----------eEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEE
Q 001776 534 KAWLYDNLGSRVDYDAPGHS----------STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (1015)
Q Consensus 534 ~vwd~~~~~~~~~~~~~~~~----------i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 603 (1015)
..+|+++++.+......... +..-....++ .++.+..++. .+.+ |..+++.+.... .. ....
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~---~~~~-d~~tg~~~w~~~-~~--~~~~ 206 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGR---VVAV-DLATGEKLWSKP-IS--GIYS 206 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSS---EEEE-ETTTTEEEEEEC-SS---ECE
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCe---EEEE-ECCCCCEEEEec-CC--CccC
Confidence 99999999887766553322 1222233344 6665554331 3445 999998664333 22 2222
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001776 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 604 v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
....++..+++++.++.|..||+.+|+.+-
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 245778888888899999999999998764
|
... |
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.8e-07 Score=88.99 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhcCCC--------ccHHHHHHHhhcccHHHHHHHhcCCc-cccCCcchhHHHHHH
Q 001776 6 RELVFLILQFLDEEKFKETVHKLEQDSGFF--------FNMRYFEDMVTNGEWDEVEKYLSGFT-KVDDNRYSMKIFFEI 76 (1015)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i 76 (1015)
.-+-|+|..||..+||.++|..|-++|.+. .++..++++|+.|+...|+...+.-. .+. +....+-|.+
T Consensus 116 ~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~l 193 (389)
T KOG0396|consen 116 NKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhHH
Confidence 446789999999999999999999999875 23788999999999999998776541 111 1223377999
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhcccccccccccccCCCC-hhHHHHHHH--HHHhhccc
Q 001776 77 RKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGDT-KSARGIMLA--ELKKLIEA 153 (1015)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~-~~~R~~l~~--~l~~~~~~ 153 (1015)
+.|.|+||+..+++.+|+.+.++.+.|......++++....+|.++....... |.+. ...|=..+. .++.+++-
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKL 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999998878899999999998876654332 4332 223433333 22332221
Q ss_pred CCCcccccCCCCCchHHHHHHHHHHHHHHHh
Q 001776 154 NPLFRDKLQFPSLKNSRLRTLINQSLNWQHQ 184 (1015)
Q Consensus 154 ~~~~~~~~~~~~~p~~rL~~ll~qa~~~q~~ 184 (1015)
..+|+-| +|..+|+--|..|+.
T Consensus 271 -------~~i~~~~--~L~~~l~~GLsalKT 292 (389)
T KOG0396|consen 271 -------FGIPINP--ALTIYLQAGLSALKT 292 (389)
T ss_pred -------hCCCCCc--HHHHHHHhhhhhccc
Confidence 1222222 477777766666654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-05 Score=89.26 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=77.4
Q ss_pred EccCCCEEEEEcCCeEEEEeCCC-----CceeEEeCCCCCCeeEEEEcCCCCcEEEEEE-cCCeEEEEEcccce------
Q 001776 851 LSKNDSYVMSASGGKISLFNMMT-----FKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRVDE------ 918 (1015)
Q Consensus 851 ~s~dg~~la~~sdg~i~iwd~~~-----~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~vwd~~~~~------ 918 (1015)
+.++|++... .+++|.+.|..+ .+.+..+. -......++++| ||+++++++ .+.+|.|.|+++.+
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 3457887665 477899999988 34555554 445678899999 888776654 58899999998754
Q ss_pred ------EEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q 001776 919 ------VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 919 ------~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~ 958 (1015)
.+.+..--.+ ....+|.++|+...|-.-|..|..|++.+
T Consensus 361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2344433233 45688999999889999999999999987
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00019 Score=74.26 Aligned_cols=220 Identities=16% Similarity=0.132 Sum_probs=142.4
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEc-cCCCEEEEEECC
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS-PDGTLFGVAYSK 439 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~d 439 (1015)
++.|.+....|+++....+.|..|+..+++.... . . .....+++. +++ .|+.+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~-~-~~~~G~~~~~~~g-~l~v~~~~ 60 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------D-L-PGPNGMAFDRPDG-RLYVADSG 60 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------E-S-SSEEEEEEECTTS-EEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------e-c-CCCceEEEEccCC-EEEEEEcC
Confidence 6788884444888877889999999988865431 1 1 127778888 564 45555555
Q ss_pred CeEEEEEccCCceeeeeeEEe--c-ccCceeEEEEecCCCceEEEEEeCC--------CeEEEEEcCCCceEEEeeCCCC
Q 001776 440 HIVHLYTYHGGDELRNHLEIE--A-HVGSVNDLAFSYPNKQLSVVTCGED--------RVIKVWDAVTGTKQYIFEGHES 508 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~--~-h~~~V~~~~~s~~~~~~~l~s~s~d--------g~v~vwd~~~~~~~~~~~~h~~ 508 (1015)
+ +.++|..+++.. .+.... . .....+.+++.++|+ +.++.... |.|..++.. ++...... .-.
T Consensus 61 ~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~ 134 (246)
T PF08450_consen 61 G-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLG 134 (246)
T ss_dssp C-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EES
T ss_pred c-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Ccc
Confidence 5 566698887543 222332 1 345688999999998 56665543 557777766 55444333 345
Q ss_pred CEEEEeecccCCccEE-EEEeCCCeEEEEeCCCCCc----eee-ecCCC--CceEEEEECCCCCEEEEEeeCCCCCceEE
Q 001776 509 PVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGS----RVD-YDAPG--HSSTMMAYSADGARLFSCGTNKEGESYLV 580 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~----~~~-~~~~~--~~i~~~~~s~~~~~l~~~~~d~~~~~~i~ 580 (1015)
..+.++|++++ +.| ++-+..+.|..++++.... ... ..... ...-.+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~dg--~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSPDG--KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEETTS--SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECCcc--hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 57889997765 444 5667788899999875443 111 22222 24778999999987666442 34699
Q ss_pred EEeCCCCeeeEEeeCCCCCCeEEEEEe-CCCCEEEEEe
Q 001776 581 EWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (1015)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~l~~~~ 617 (1015)
++|.. |+.+..+..... .+++++|. ++.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99987 888888877644 78899994 6666666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-06 Score=88.49 Aligned_cols=255 Identities=14% Similarity=0.069 Sum_probs=173.9
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC-CCeEEEEEc
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE-DRVIKVWDA 494 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~-dg~v~vwd~ 494 (1015)
-|.+.|+.+..+ -.+++.+++.||.++.|.-..-.-+.-...+..|.+.|.+++.+-++. ++.|.+. |..++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence 477888877665 467999999999999997654222222235678999999999999998 7888777 999999999
Q ss_pred CCCceEEEeeC--CCCCEEEEeecccC-Cc--cEEEEEeCCCeEEEEeCCCCCcee--eecCCCCceEEEEECCCCCEEE
Q 001776 495 VTGTKQYIFEG--HESPVYSICPHHKE-NI--QFIFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 495 ~~~~~~~~~~~--h~~~v~~i~~~~~~-~~--~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
.+-..+..++- -.+.+ +|...+ +- .+-++.-.++.+.++|-....+.. .-..|..+|..+.+++-+..++
T Consensus 84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v 160 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV 160 (558)
T ss_pred eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee
Confidence 87655433221 12222 222222 11 222334467889999877655433 3345677999999999999888
Q ss_pred EEeeCCCCCceEEEEeCCC------CeeeEEeeCC--------CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001776 568 SCGTNKEGESYLVEWNESE------GAVKRTYHGL--------GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~------~~~~~~~~~~--------~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 633 (1015)
+.. ..+.|.-|.... .+....++.. ......++.|+|++..+.+-+.|..|++++..+|+.+
T Consensus 161 SiD----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 161 SID----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ecc----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 764 345799998763 1111111111 1125678999999999999999999999999998876
Q ss_pred EEEecCC-------------------------------CCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeec
Q 001776 634 ASIDADG-------------------------------GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVE 682 (1015)
Q Consensus 634 ~~~~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 682 (1015)
+.+.... +...-+.++|...|++|+-++-= -|++.++.++ .+.+.+.
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn-~v~ri~g 314 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTN-TVVRILG 314 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecC-eEEEEec
Confidence 5543110 12233567888889999887655 4889999988 6666654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-05 Score=79.25 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=139.6
Q ss_pred CCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeeccc
Q 001776 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518 (1015)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~ 518 (1015)
+|.|..||..+|+.+.... +..-.....+. ..+++. .+++++.++.+..||..+|+.+.++.. ...+..... ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EE
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ec
Confidence 6889999999998776442 21111222211 233455 577778999999999999999988775 222211111 12
Q ss_pred CCccEEEEEeCCCeEEEEeCCCCCceeee-cCCC--C-ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEee
Q 001776 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDY-DAPG--H-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1015)
Q Consensus 519 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~--~-~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~ 594 (1015)
. ..++.++.++.+..+|..+++..... .... . .........++..++++.. .+.|..+|.++|+.+..+.
T Consensus 76 ~--~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 76 G--GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp T--TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred c--cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 2 46777778889999999998887763 3221 1 1122233334777777764 3369999999999988877
Q ss_pred CCCCCC---------eEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001776 595 GLGKRS---------VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1015)
Q Consensus 595 ~~~~~~---------i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 665 (1015)
...... +..-....++ .++.++.++.+..+|+.+++.+-... . ..+.. ....++..|+.++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~---~~~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I---SGIYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S---S-ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C---CCccC-CceeeCCEEEEEeCCCE
Confidence 644211 1122222234 77778878864444999998664332 1 11222 14467788888889999
Q ss_pred EEEEEccCCceee
Q 001776 666 IKILANADGIRLL 678 (1015)
Q Consensus 666 i~iw~~~~~~~~~ 678 (1015)
+..||+.+|+...
T Consensus 224 l~~~d~~tG~~~W 236 (238)
T PF13360_consen 224 LYALDLKTGKVVW 236 (238)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCCEEe
Confidence 9999999995443
|
... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-05 Score=79.89 Aligned_cols=249 Identities=12% Similarity=0.110 Sum_probs=148.7
Q ss_pred ccccCCCCEEEEEEccCCC-EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 413 LSSDYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~-~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
++.+|...|..++|||... ++..++.+.+|+|.|+++...+. .+..| ..+++++|.-|..+ +|..|-..|.|.+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 4778999999999999877 78889999999999999976655 55566 78999999999876 8999999999999
Q ss_pred EEcCCCce-EEEeeC--CCCCEEEEeeccc----CCccEEEEEeCCCeEEEEeCCCCCc--eeeecC-CCCceEEEEECC
Q 001776 492 WDAVTGTK-QYIFEG--HESPVYSICPHHK----ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDA-PGHSSTMMAYSA 561 (1015)
Q Consensus 492 wd~~~~~~-~~~~~~--h~~~v~~i~~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 561 (1015)
||++..+- +..+.+ ...+|..++.-+. ..|.+++....+ +..|++..... ...... ..+.+.++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99986542 222222 2334444432111 112344444433 34565543222 221222 233556666777
Q ss_pred CCCEEEEEeeCCCCCceEE----EEeCCCCeeeEEee----CCCCCC---eEEEEEeCCCCEEEEEe-CCCcEEEEeCCC
Q 001776 562 DGARLFSCGTNKEGESYLV----EWNESEGAVKRTYH----GLGKRS---VGVVQFDTTKNRFLAAG-DEFMIKFWDMDN 629 (1015)
Q Consensus 562 ~~~~l~~~~~d~~~~~~i~----iwd~~~~~~~~~~~----~~~~~~---i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~ 629 (1015)
..+.++.......+...++ --|..+|..+..-+ +..... -..+.-.++.++++..+ ..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 6666665543321111111 12223333322111 110000 01122234556666544 667899999999
Q ss_pred CceeEEEecCCCCCCcceEEEcC-C-CCEEEEEeCCCcEEEEEcc
Q 001776 630 VNLLASIDADGGLQASPCIRFNK-E-GILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 630 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iw~~~ 672 (1015)
++.++.+... .+|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~---epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALS---EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccC---cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999999764 4666666554 3 35666665 4578887654
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00059 Score=65.66 Aligned_cols=93 Identities=6% Similarity=-0.064 Sum_probs=65.7
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCE
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGIL 656 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 656 (1015)
+.+.-.|..+|+....-.... .+.+-+.- -|++++.|...|.+++.+..+|.....+...+.. . ......+++..
T Consensus 33 ~~~~avd~~sG~~~We~ilg~--RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-k-~~a~~d~~~gl 107 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGV--RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-K-VRAQCDFDGGL 107 (354)
T ss_pred ceEEEecCCCCcEEeehhhCc--eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh-c-cceEEcCCCce
Confidence 357777888887665433222 22222221 3678999999999999999999888777653221 1 23456778999
Q ss_pred EEEEeCCCcEEEEEccCC
Q 001776 657 LAVSTNDNGIKILANADG 674 (1015)
Q Consensus 657 l~~~~~dg~i~iw~~~~~ 674 (1015)
+..++.|+..+..|..+.
T Consensus 108 Iycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 108 IYCGSHDGNFYALDPKTY 125 (354)
T ss_pred EEEecCCCcEEEeccccc
Confidence 999999999999998876
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=63.44 Aligned_cols=39 Identities=28% Similarity=0.543 Sum_probs=37.3
Q ss_pred ceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001776 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 917 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd 955 (1015)
++++.++.+|.++|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00024 Score=82.93 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=150.4
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1015)
.|.++.|..+.+.++.+..+|.|.+-|..+......-.. ...|.+++||||+++++..+.++++.+-.-.= .++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f--~~i~ 144 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDF--EPIA 144 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccc--cchh
Confidence 788899999999999999999999998877654433322 34689999999999999999888877654211 1111
Q ss_pred eecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccc
Q 001776 680 TVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEI 759 (1015)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~ 759 (1015)
...-+...-... .+-.. +.......|.+.......++.+..-..++.
T Consensus 145 E~~L~~d~~~~s---------k~v~V---------------GwGrkeTqfrgs~gr~~~~~~~~~ek~~~~--------- 191 (1265)
T KOG1920|consen 145 EKPLDADDERKS---------KFVNV---------------GWGRKETQFRGSEGRQAARQKIEKEKALEQ--------- 191 (1265)
T ss_pred cccccccccccc---------cccee---------------cccccceeeecchhhhcccccccccccccc---------
Confidence 100000000000 00000 000001122211110000000000000000
Q ss_pred cCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEec-----cCcEEEEeeccccCCCCCCceecccCceecCCCCCcccc
Q 001776 760 TEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-----SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMT 834 (1015)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~-----~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 834 (1015)
..-.+.-+++.|--||+++++.. ....++||+-. |.+-.
T Consensus 192 -------------~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~Lns 235 (1265)
T KOG1920|consen 192 -------------IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GALNS 235 (1265)
T ss_pred -------------hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------chhhc
Confidence 00122335688999999988833 22677777633 21111
Q ss_pred ccCCCCCCCCCccEEEEccCCCEEEEEc----CCeEEEEeCCC---CceeEEeCCCCCCeeEEEEcCCCCcEEEE---EE
Q 001776 835 NDISDTNPEDAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMTTFMPPPPAATFLAFHPQDNNIIAI---GM 904 (1015)
Q Consensus 835 ~~l~~~~~~~~v~~l~~s~dg~~la~~s----dg~i~iwd~~~---~~~~~~l~~~~~~i~~l~~sp~d~~~la~---g~ 904 (1015)
... ...+.-.+++|-|.|.++|+-. |+.|.++.-.. |+....+.....++..++|+. ++.+||+ ..
T Consensus 236 ~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~ 311 (1265)
T KOG1920|consen 236 TSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNL 311 (1265)
T ss_pred ccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeeeccc
Confidence 000 0234446799999999999863 56799998543 222223333444589999999 8999988 44
Q ss_pred cCCeEEEEEcccce--EEEEEcCccCCeEEEEEeCCC-CEEEEEeCCCcEEEEE
Q 001776 905 EDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFSNTL-NVLVSSGADSQLCVWS 955 (1015)
Q Consensus 905 ~dg~v~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg-~~l~s~s~dg~v~vWd 955 (1015)
....|++|-+.+-. +.+.+....... +.|+|.. ..|..-..+|...++|
T Consensus 312 e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 312 ENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD 363 (1265)
T ss_pred ccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence 55569999887642 223333222222 7777743 2233333555544444
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0067 Score=69.79 Aligned_cols=596 Identities=12% Similarity=0.092 Sum_probs=285.5
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC---
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD--- 429 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--- 429 (1015)
++..+-..|+..-++| ++.+|+.-|.=.+-.+.+...... .....+. ...-++|..++.-.+
T Consensus 303 lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ilet---~~NLgPI~Dm~Vvd~d~q 367 (1096)
T KOG1897|consen 303 LGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILET---FVNLGPIVDMCVVDLDRQ 367 (1096)
T ss_pred cCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhhh---cccccceeeEEEEecccc
Confidence 4455566777777777 578888766555555543321110 0000000 113358888877552
Q ss_pred -CCEEEEEE---CCCeEEEEEccCCceeeeeeEEecccCceeEEE--EecCCCceEEEEEeCCCeEEEEEcCCCceEEEe
Q 001776 430 -GTLFGVAY---SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 430 -g~~las~~---~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~--~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~ 503 (1015)
+..+++|+ .||+++|..-.-+-.......+.| -..++.+. +.++-.. +++.+-.+. -++..+...-.....
T Consensus 368 ~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~~ 444 (1096)
T KOG1897|consen 368 GQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETED 444 (1096)
T ss_pred CCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEecc
Confidence 23566654 488999986543322122223455 44567776 4443332 344433322 234443222111111
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
.+.......+..+.-. ++.|+=.. ...||+++-. .....+... ..++....+.+...++.++.+. .+...+
T Consensus 445 ~gf~~~~~Tif~S~i~-g~~lvQvT-s~~iRl~ss~--~~~~~W~~p-~~~ti~~~~~n~sqVvvA~~~~----~l~y~~ 515 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTIN-GNQLVQVT-SNSIRLVSSA--GLRSEWRPP-GKITIGVVSANASQVVVAGGGL----ALFYLE 515 (1096)
T ss_pred ccccccCceEEEEccC-CceEEEEe-cccEEEEcch--hhhhcccCC-CceEEEEEeecceEEEEecCcc----EEEEEE
Confidence 2222222222222111 12222221 2446666533 222222222 2344444455555666655322 355556
Q ss_pred CCCCeeeEEeeCCCCCCeEEEEEeCCC------CEEEEEeCCCcEEE-EeCCCCceeEEEec--CCCCCCcceEEEcCCC
Q 001776 584 ESEGAVKRTYHGLGKRSVGVVQFDTTK------NRFLAAGDEFMIKF-WDMDNVNLLASIDA--DGGLQASPCIRFNKEG 654 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~v~~~~~~------~~l~~~~~dg~i~v-wd~~~~~~~~~~~~--~~~~~~v~~v~~s~~~ 654 (1015)
+..+......+......+.|+.++|-| ++++.|..+..+.+ .-..+...+..... ..-...|--..+-.|.
T Consensus 516 i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~ 595 (1096)
T KOG1897|consen 516 IEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDI 595 (1096)
T ss_pred eeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccc
Confidence 655553333333334478888888753 26666765444433 33333333332221 1112223334454567
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccce---------ec--ccccccccccccccccccccccccc
Q 001776 655 ILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAI---------VK--APAIGTFGSANANVGTSLGERTAPA 723 (1015)
Q Consensus 655 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1015)
.+|.++..||.+.-|.+..+.-.....+.............. ++ .|..-...+...-+++..++ -+
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~k---ev 672 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLK---EV 672 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchH---Hh
Confidence 899999999998766554431111111110000000000000 00 00000000000001111100 01
Q ss_pred cccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEe
Q 001776 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (1015)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw 803 (1015)
.....|+.+. .+| .++ ....+.+++..++....... +++. -....+.+++.+....+.+.+.......=
T Consensus 673 ~~~c~f~s~a--~~d--~l~-~~~~~~l~i~tid~iqkl~i-rtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 673 NHMCPFNSDA--YPD--SLA-SANGGALTIGTIDEIQKLHI-RTVP-----LGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred hhhccccccc--CCc--eEE-EecCCceEEEEecchhhcce-eeec-----CCCChhheEecccceEEEEEecccccchh
Confidence 1112222221 111 222 22335666666654322211 1111 23455677777755555554433211100
Q ss_pred eccccCCCCCCceecccCceecCCCCCccccc-cCCCCCCCCCccEEEEccC-CCEEEEEc-----------CCeEEEEe
Q 001776 804 KWPRNERNSTGKATTNQAPQLWQPPSGILMTN-DISDTNPEDAVPCFALSKN-DSYVMSAS-----------GGKISLFN 870 (1015)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~l~~~~~~~~v~~l~~s~d-g~~la~~s-----------dg~i~iwd 870 (1015)
. .+.......++++|..+-+.+.. .+........+.+..|..| +.++++|. .|.|.|+.
T Consensus 742 -------~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe 813 (1096)
T KOG1897|consen 742 -------Y-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFE 813 (1096)
T ss_pred -------h-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEE
Confidence 0 01111112356677776654332 1221111223444457777 77888772 26788998
Q ss_pred CCCCceeEEeCCC--CCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCC
Q 001776 871 MMTFKTMTTFMPP--PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (1015)
Q Consensus 871 ~~~~~~~~~l~~~--~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 948 (1015)
+..+..+.....+ .+.+.++..- +|+++|. -+..|++|++.+.+.++.-..|..++..+...-.|..++.|+-=
T Consensus 814 ~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm 889 (1096)
T KOG1897|consen 814 FEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLM 889 (1096)
T ss_pred EecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeecc
Confidence 8774444333222 3445555443 5666653 46789999999987777777788999999999999999999988
Q ss_pred CcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001776 949 SQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1015)
Q Consensus 949 g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~ 1006 (1015)
+.+.+--.+..+-. ........ +..+++++.+-.+..++.+-.+|.+++-..+
T Consensus 890 ~Sitll~y~~~eg~---f~evArD~--~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 890 RSITLLQYKGDEGN---FEEVARDY--NPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred ceEEEEEEeccCCc---eEEeehhh--CccceeeEEEecCceEEeecccccEEEEEec
Confidence 88776655543311 11111111 2267889999988888888777777765543
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.5e-07 Score=82.86 Aligned_cols=133 Identities=20% Similarity=0.243 Sum_probs=97.6
Q ss_pred HHHHHHHhhcccHHHHHHHhcCCc-cccCCcchhHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHH
Q 001776 38 MRYFEDMVTNGEWDEVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEIT 116 (1015)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1015)
...++++|++||++.|+..+.... .+... ...+.|.|+.|+|+|+|..++..+|+.+.|+.+.|......+.++++.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 578999999999999999998772 22111 123889999999999999999999999999999765543557888888
Q ss_pred Hhhccccccc--ccccccCCCChhHHHHHHHHHHhhcccCCCcccccCCCCCc-hHHHHHHHHHHHHHH
Q 001776 117 QLLTLENFRD--NEQLSKYGDTKSARGIMLAELKKLIEANPLFRDKLQFPSLK-NSRLRTLINQSLNWQ 182 (1015)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1015)
.+|..++..+ ...+..+- ..+.|.++.+.+.+.+-...- +| .+.|..++.+....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 8888776654 22222221 236789999999886665222 44 456888888776544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-05 Score=84.78 Aligned_cols=286 Identities=13% Similarity=0.076 Sum_probs=164.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
+...|.--+++..++ +++.|+.-|.+++|+-..++.+.. ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 455566666777777 789999999999999988876542 0233456677788999999999
Q ss_pred EEECCCeEEEEEccCCceeeeee--EE-ecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC----ceEEEeeCCC
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHL--EI-EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG----TKQYIFEGHE 507 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~--~~-~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~----~~~~~~~~h~ 507 (1015)
.|+..|.|.|+-+..+....... .. ..|...|++++|++|+. .+++|...|.|..-.+.+. ...+.+-...
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999887643322111 11 23778999999999999 7999999999999887762 1123333456
Q ss_pred CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee--ecCCCCceEEEEECCC----CCEEEEEeeCCCCCceEEE
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD--YDAPGHSSTMMAYSAD----GARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~~i~~~~~s~~----~~~l~~~~~d~~~~~~i~i 581 (1015)
+.|..+.+.. .+|+.++.-..+ +++.+....... ....+..-...+|-|. .+-.+.++..| .++
T Consensus 171 s~IVQlD~~q----~~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-----~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYLQ----SYLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-----LRL 240 (726)
T ss_pred cceEEeeccc----ceehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-----Cce
Confidence 6777776532 234433333333 344433221111 1111111234455443 33444455443 677
Q ss_pred EeCC-CCeeeEEeeCC------CCCC--eE---------------EEE----EeCCCCEEEEEeCCCcEEEEeCCCCcee
Q 001776 582 WNES-EGAVKRTYHGL------GKRS--VG---------------VVQ----FDTTKNRFLAAGDEFMIKFWDMDNVNLL 633 (1015)
Q Consensus 582 wd~~-~~~~~~~~~~~------~~~~--i~---------------~v~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 633 (1015)
|... .|+.+++..-. .... +. .+. +.-.+..+++-++-| |+|+|..+...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8654 23433332110 0000 00 000 111122444444444 888887765544
Q ss_pred EEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCcee
Q 001776 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRL 677 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~ 677 (1015)
.-... ...|..+ +..|+-|++-..|+.+++..+.+.++.
T Consensus 320 l~se~---~~DI~dV--s~~~neiFvL~~d~~l~~~sv~s~qr~ 358 (726)
T KOG3621|consen 320 LWSEG---GHDILDV--SHCGNEIFVLNLDRGLKVESVASRQRK 358 (726)
T ss_pred EeecC---CCceeEE--eecCceEEEEecCCceeEEEeehhHHH
Confidence 33322 1233333 345666776777777777777665443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-05 Score=83.34 Aligned_cols=297 Identities=12% Similarity=0.070 Sum_probs=155.1
Q ss_pred CCCCCEEEEEeeC-----CCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001776 560 SADGARLFSCGTN-----KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 560 s~~~~~l~~~~~d-----~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
|||+++++..... .+....+.++|+.+++....... ...+....|+|+|+.++... ++.|++++..++...+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5788877764321 01133589999999876655444 23677889999999998886 5789999988774443
Q ss_pred EEecCCC----------------CCCcceEEEcCCCCEEEEEe-CCCcEEEEEccCC---ce---eeeeecCCccccccc
Q 001776 635 SIDADGG----------------LQASPCIRFNKEGILLAVST-NDNGIKILANADG---IR---LLRTVESRTFDASRV 691 (1015)
Q Consensus 635 ~~~~~~~----------------~~~v~~v~~s~~~~~l~~~~-~dg~i~iw~~~~~---~~---~~~~~~~~~~~~~~~ 691 (1015)
+...+. ...-..+.|||||++||... ++..+..+.+... .. ....+.
T Consensus 78 -lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~--------- 147 (353)
T PF00930_consen 78 -LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIR--------- 147 (353)
T ss_dssp -SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE---------
T ss_pred -eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccc---------
Confidence 322220 12335788999999998766 4455555443211 00 010110
Q ss_pred cccceecccccccccccccccccccccccccccccccCCCCCCCCccccccccccccc--ceeeeeeccccCCcceeEec
Q 001776 692 ASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVE--KSRIWKLTEITEPSQCRSLR 769 (1015)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~--~v~iw~~~~~~~~~~~~~~~ 769 (1015)
+-..|+... .+.++++...... .+.
T Consensus 148 -------------------------------------------------YPk~G~~np~v~l~v~~~~~~~~~----~~~ 174 (353)
T PF00930_consen 148 -------------------------------------------------YPKAGDPNPRVSLFVVDLASGKTT----ELD 174 (353)
T ss_dssp ---------------------------------------------------BTTS---EEEEEEEESSSTCCC----EE-
T ss_pred -------------------------------------------------cCCCCCcCCceEEEEEECCCCcEE----Eee
Confidence 001111112 2334455432221 222
Q ss_pred cC--CCcCCccEEEEEEcCCCcEEEEeccC---cEEEEeeccccCCCCCCceecccCceecCCCCCccc---cccCCCCC
Q 001776 770 LP--DNLTAMRVSRLIYTNSGLAILALASN---AVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM---TNDISDTN 841 (1015)
Q Consensus 770 ~~--~~~~~~~i~~l~~s~dg~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~l~~~~ 841 (1015)
.+ .......+..+.|+++++.++..-.+ ..+.+. ++|..++... ...-.+
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~--------------------~~d~~tg~~~~~~~e~~~~-- 232 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLV--------------------LCDASTGETRVVLEETSDG-- 232 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEE--------------------EEEECTTTCEEEEEEESSS--
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEE--------------------EEECCCCceeEEEEecCCc--
Confidence 22 02346778999999999944443322 222222 2233333211 111111
Q ss_pred CCCCccEEEEc-cCCCEEEEEc--CCe--EEEEeCCCCceeEEeCCCCCCeeE-EEEcCCCCcEEEEEEcC----CeEEE
Q 001776 842 PEDAVPCFALS-KNDSYVMSAS--GGK--ISLFNMMTFKTMTTFMPPPPAATF-LAFHPQDNNIIAIGMED----SSIQI 911 (1015)
Q Consensus 842 ~~~~v~~l~~s-~dg~~la~~s--dg~--i~iwd~~~~~~~~~l~~~~~~i~~-l~~sp~d~~~la~g~~d----g~v~v 911 (1015)
--..-....+. +++..++..+ +|- |.+++...+. .+.+....-.|+. +.++++++.+..+|..+ ..|+.
T Consensus 233 Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 233 WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 11222355665 7777666554 554 6666766655 4456655566754 67888444455566553 36777
Q ss_pred EEcccceEEEEEcCccCCeEEEEEeCCCCEEEEE
Q 001776 912 YNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945 (1015)
Q Consensus 912 wd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~ 945 (1015)
-+++++..+..|....+.-..+.|||+|++++-.
T Consensus 312 v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred EEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 7777334455665444433689999999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00021 Score=78.24 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=145.8
Q ss_pred ccCCCeEEEEE--------ecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEE
Q 001776 365 HPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVA 436 (1015)
Q Consensus 365 sp~g~~lla~g--------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~ 436 (1015)
|||++++|+.- +..+.+.|||+.+++... +......+....|||||+.+|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 67787665532 234678899999876554 22225788899999999999998
Q ss_pred ECCCeEEEEEccCCceeeeeeEEec-------c---------cCceeEEEEecCCCceEEEEEeC-CCeEE---------
Q 001776 437 YSKHIVHLYTYHGGDELRNHLEIEA-------H---------VGSVNDLAFSYPNKQLSVVTCGE-DRVIK--------- 490 (1015)
Q Consensus 437 ~~dg~v~iwd~~~~~~~~~~~~~~~-------h---------~~~V~~~~~s~~~~~~~l~s~s~-dg~v~--------- 490 (1015)
. ++.|.+++..++...+. +..+ - -+.-..+.||||+++ |+.... +..|.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~~~~~~~ 135 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYPLPDYSP 135 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEEEEEESS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEEeeccCC
Confidence 6 46799999887743321 1122 0 122357889999994 444322 22222
Q ss_pred --------------------------EEEcCCCceEE-Ee----eCCCCCEEEEeecccCCccEEEEE--eCCC---eEE
Q 001776 491 --------------------------VWDAVTGTKQY-IF----EGHESPVYSICPHHKENIQFIFST--ATDG---KIK 534 (1015)
Q Consensus 491 --------------------------vwd~~~~~~~~-~~----~~h~~~v~~i~~~~~~~~~~l~s~--~~dg---~i~ 534 (1015)
|+|+.+++... .. ..-...+..+.|.+++ ..++.. ..+. .+.
T Consensus 136 ~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 136 PDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp STESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT--EEEEEEEEETTSTEEEEE
T ss_pred ccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC--cEEEEEEcccCCCEEEEE
Confidence 33443333211 00 1122334555554443 323222 2222 255
Q ss_pred EEeCCCCCceeeecC-CCCce---EEEEEC-CCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCe-EEEEEeC
Q 001776 535 AWLYDNLGSRVDYDA-PGHSS---TMMAYS-ADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-GVVQFDT 608 (1015)
Q Consensus 535 vwd~~~~~~~~~~~~-~~~~i---~~~~~s-~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i-~~v~~~~ 608 (1015)
++|..++........ ...++ ....+. +++..++..+. +++-..|.+++...+.......+ .- .| ..+.+++
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~~-~V~~i~~~d~ 290 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-DW-EVTSILGWDE 290 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-SS--EEEEEEEEC
T ss_pred EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-ce-eecccceEcC
Confidence 567766554433221 22222 245554 88888777776 67788899999888875533333 22 45 3467888
Q ss_pred CCCEEEEEe-C----CCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEe
Q 001776 609 TKNRFLAAG-D----EFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661 (1015)
Q Consensus 609 ~~~~l~~~~-~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 661 (1015)
+++.++..+ . ...|+.-++..+..+..+...... ...+.|||+|++++...
T Consensus 291 ~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 291 DNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEE
T ss_pred CCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEE
Confidence 887766544 3 235666677634455555543221 14899999999887554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00098 Score=68.74 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=161.4
Q ss_pred CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEEC----------CCeEEEEEcc
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS----------KHIVHLYTYH 448 (1015)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----------dg~v~iwd~~ 448 (1015)
+.++|+|.++++.+.... .+-.-.+..|||++.+.+++. .-.|.+||..
T Consensus 17 ~rv~viD~d~~k~lGmi~---------------------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~ 75 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID---------------------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ 75 (342)
T ss_dssp EEEEEEETTTTEEEEEEE---------------------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEee---------------------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC
Confidence 468999999888765311 123334778999999887632 3459999999
Q ss_pred CCceeeeeeEEec-ccC----ceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccE
Q 001776 449 GGDELRNHLEIEA-HVG----SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523 (1015)
Q Consensus 449 ~~~~~~~~~~~~~-h~~----~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 523 (1015)
+-...... .+.. |.. .....+++.|++.+++.=.+--.+|.|-|+..++.+.++.-. .+..+ .|.++ +-
T Consensus 76 TL~~~~EI-~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i--yP~~~-~~ 149 (342)
T PF06433_consen 76 TLSPTGEI-EIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI--YPSGN-RG 149 (342)
T ss_dssp TTEEEEEE-EETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE--EEEET-TE
T ss_pred cCcccceE-ecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE--EecCC-Cc
Confidence 86544322 2322 121 234568899999655555666778999999999998887632 22223 34444 35
Q ss_pred EEEEeCCCeEEEEeCCCCCceee-----ecCCCC-ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee--eEEeeC
Q 001776 524 IFSTATDGKIKAWLYDNLGSRVD-----YDAPGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV--KRTYHG 595 (1015)
Q Consensus 524 l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~-~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~--~~~~~~ 595 (1015)
+.+-|.||.+....++..+.... +..... .+..-++...+..++..+.+ +.|+-.|+..... ...+..
T Consensus 150 F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 150 FSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp EEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEES
T ss_pred eEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccc
Confidence 88889999999998885444321 111122 22233444444444444432 3466666654431 122211
Q ss_pred CC---------CCCeEEEEEeCCCCEEEEEe---CCC-------cEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCC-
Q 001776 596 LG---------KRSVGVVQFDTTKNRFLAAG---DEF-------MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGI- 655 (1015)
Q Consensus 596 ~~---------~~~i~~v~~~~~~~~l~~~~---~dg-------~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~- 655 (1015)
.. -+....+++++..+.|++.- .++ .|.++|+.+++.+..+... ..+.++..+.+.+
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~---~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE---HPIDSIAVSQDDKP 302 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE---EEESEEEEESSSS-
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC---CccceEEEccCCCc
Confidence 10 01233477887777776632 122 4888899999999999863 3577999999765
Q ss_pred EEEEEe-CCCcEEEEEccCCceeeeeecC
Q 001776 656 LLAVST-NDNGIKILANADGIRLLRTVES 683 (1015)
Q Consensus 656 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~ 683 (1015)
+|++.+ .++.+.+||..+| +.++.+..
T Consensus 303 ~L~~~~~~~~~l~v~D~~tG-k~~~~~~~ 330 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATG-KLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEETTT---EEEEE--
T ss_pred EEEEEcCCCCeEEEEeCcCC-cEEeehhc
Confidence 565544 5789999999999 66666653
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.36 E-value=9e-06 Score=77.65 Aligned_cols=200 Identities=11% Similarity=0.056 Sum_probs=110.9
Q ss_pred eeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceE------------EEeeCCCCCEEEEeecccCCccEEEEEeCCCeE
Q 001776 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ------------YIFEGHESPVYSICPHHKENIQFIFSTATDGKI 533 (1015)
Q Consensus 466 V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~------------~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i 533 (1015)
++.+.++.+. .|+++..++.+......++.+. +.+..|+++-.+-..+ -.+..++++..||.+
T Consensus 39 ~~~~~~v~~~---~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s--~~~t~V~~~~~dg~~ 113 (319)
T KOG4714|consen 39 LSKVSLSAEY---ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACT--MTDNRVCIGYADGSL 113 (319)
T ss_pred EEEeechhhh---eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCccccc--ccCCceEecCCCceE
Confidence 5555665443 3666666665555544333322 2333333221111111 122569999999999
Q ss_pred EEEeCCCCCceee-ecCCCCceEEEEECCCCCEEEEEeeCC-CCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC
Q 001776 534 KAWLYDNLGSRVD-YDAPGHSSTMMAYSADGARLFSCGTNK-EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN 611 (1015)
Q Consensus 534 ~vwd~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~d~-~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~ 611 (1015)
.+.+.+....... .......-.+.+....+..+.+++... ......+.|+++..+....-....+ .+.+++-+|..+
T Consensus 114 ~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~-~v~~l~~hp~qq 192 (319)
T KOG4714|consen 114 AVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD-AVTALCSHPAQQ 192 (319)
T ss_pred EEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc-cchhhhCCcccc
Confidence 9998775211110 000000111222333444444432100 0011255555543322221111222 488888888775
Q ss_pred EE-EEEeCCCcEEEEeCCCCceeEE-EecCCCCCCcceEEEcC-CCCEEEEEeCCCcEEEEEccC
Q 001776 612 RF-LAAGDEFMIKFWDMDNVNLLAS-IDADGGLQASPCIRFNK-EGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 612 ~l-~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iw~~~~ 673 (1015)
.+ ++|++||.+-+||.++...... +.. |..+++.+-|+| ++..|+++++||.+.-||..+
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVAMPVSLLKA--HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cEEEEecCCCeEEEEEcccccchHHHHHH--hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 54 5566999999999998754433 333 377899999999 778999999999999999875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00014 Score=84.73 Aligned_cols=279 Identities=11% Similarity=0.168 Sum_probs=158.6
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
.+.|.++.|..++.. ++.+..+|.|.+-|..+..... ...-...|.+++||||+..++.
T Consensus 68 d~~i~s~~fl~d~~~-i~v~~~~G~iilvd~et~~~ei--------------------vg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNS-ICVITALGDIILVDPETLELEI--------------------VGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred CcceEEEEEecccce-EEEEecCCcEEEEcccccceee--------------------eeeccCceEEEeecCCCcEEEE
Confidence 358999999999884 5667888999999888776443 2334579999999999999999
Q ss_pred EECCCeEEEEEccCCceeeeeeEEe---cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC-ceEEEeeCCCCCEE
Q 001776 436 AYSKHIVHLYTYHGGDELRNHLEIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG-TKQYIFEGHESPVY 511 (1015)
Q Consensus 436 ~~~dg~v~iwd~~~~~~~~~~~~~~---~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~-~~~~~~~~h~~~v~ 511 (1015)
.+..+++.+-+.. -..+... .+. ...+....+-|-....+ +-|+. |...--+.... +.+....-++. =+
T Consensus 127 iT~~~tll~mT~~-f~~i~E~-~L~~d~~~~sk~v~VGwGrkeTq---frgs~-gr~~~~~~~~~ek~~~~~~~~~~-~~ 199 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKD-FEPIAEK-PLDADDERKSKFVNVGWGRKETQ---FRGSE-GRQAARQKIEKEKALEQIEQDDH-KT 199 (1265)
T ss_pred EeCCcEEEEEecc-ccchhcc-ccccccccccccceeccccccee---eecch-hhhcccccccccccccchhhccC-Cc
Confidence 9998877665421 1111100 110 01112223344332221 11111 11111110000 00010111222 23
Q ss_pred EEeecccCCccEEEEE-----eCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 512 SICPHHKENIQFIFST-----ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
+|+| .++|+++++. ...+.|++||-+ +.....-......-.+++|-|.|..+++.....+ +..|.++.-..
T Consensus 200 ~IsW--RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s-d~~IvffErNG 275 (1265)
T KOG1920|consen 200 SISW--RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS-DSDIVFFERNG 275 (1265)
T ss_pred eEEE--ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC-CCcEEEEecCC
Confidence 4666 5666788873 223789999866 3322222223334567999999999998776544 44688876432
Q ss_pred ---CeeeEEeeCCCCCCeEEEEEeCCCCEEEE---EeCCCcEEEEeCCCCcee--EEEecCCCCCCcceEEEcCCC-CEE
Q 001776 587 ---GAVKRTYHGLGKRSVGVVQFDTTKNRFLA---AGDEFMIKFWDMDNVNLL--ASIDADGGLQASPCIRFNKEG-ILL 657 (1015)
Q Consensus 587 ---~~~~~~~~~~~~~~i~~v~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~-~~l 657 (1015)
|.....+..... .+..++|+.++..|++ ......|++|.+.+.... +.+.... ..-+.|+|.. ..+
T Consensus 276 L~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~----~~~~~W~p~~~~~L 350 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ----KALLMWDPVTEKTL 350 (1265)
T ss_pred ccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc----cccccccCCCceeE
Confidence 222222222222 4889999999998888 445556999998876533 3333321 1228888833 344
Q ss_pred EEEeCCCcEEEEEc
Q 001776 658 AVSTNDNGIKILAN 671 (1015)
Q Consensus 658 ~~~~~dg~i~iw~~ 671 (1015)
..-..+|...+++.
T Consensus 351 ~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 351 HVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecCCcEEEEEE
Confidence 44446777666654
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=85.99 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=116.3
Q ss_pred EEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccc-----eEEEEEcCccCCeE
Q 001776 857 YVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-----EVKTKLKGHQKRIT 931 (1015)
Q Consensus 857 ~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~-----~~~~~l~~h~~~v~ 931 (1015)
.+++|.+..|-+-|+++|-. ..|. ..+.|.++.|.. .+.++..|+.+|.|..+|+..+ .+.+.+. |...|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 34555688899999987643 3344 567899999997 7889999999999999999864 5556665 889999
Q ss_pred EEEEeC-CCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE-EeCCeEEEEEcCCce
Q 001776 932 GLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-VHETQIAIYEAPKLE 1009 (1015)
Q Consensus 932 ~l~~sp-dg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~i~vwd~~~g~ 1009 (1015)
++..-. ++.+|++.+.+|+|++||+..-++.. -+....||......+ -+-..+....+++ |.|...++|.+..|.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l-~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYL-PAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeeccccccccc-ccccccccceEEEccCeeEEEEEecccCc
Confidence 998776 78999999999999999998866432 367788886432222 2334556666666 689999999999999
Q ss_pred EeccC
Q 001776 1010 CLKQV 1014 (1015)
Q Consensus 1010 ~l~~~ 1014 (1015)
.+.++
T Consensus 380 Ll~ti 384 (425)
T KOG2695|consen 380 LLCTI 384 (425)
T ss_pred eeecc
Confidence 98765
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-05 Score=87.47 Aligned_cols=182 Identities=8% Similarity=0.078 Sum_probs=127.2
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCC
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~ 508 (1015)
++..++.|+-...+..+|+.+.+..+ ...-..+.|+-|+. +++ ++.+|...|+|.+-|..+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeee---eeeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 45667777777778889998876555 23323334655554 466 799999999999999999999999999999
Q ss_pred CEEEEeecccCCccEEEEEeC---------CCeEEEEeCCCCCceeeecCCCCceEEEEECCCC-CEEEEEeeCCCCCce
Q 001776 509 PVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG-ARLFSCGTNKEGESY 578 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~d~~~~~~ 578 (1015)
.|.++.. .|++|++++. |..|+|||++..+.+..+..+.++ .-+.|.|.- ..+++++..+ .
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sG----q 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSG----Q 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEeccc----c
Confidence 9988764 2368888875 455899999987766555444433 345566653 3455555433 4
Q ss_pred EEEEeC---CCCeeeEEeeCC-CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeC
Q 001776 579 LVEWNE---SEGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627 (1015)
Q Consensus 579 i~iwd~---~~~~~~~~~~~~-~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~ 627 (1015)
..+-|. .... ...+..+ .+..+..++++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 666662 2221 1222222 2225889999999999999999999999973
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00047 Score=71.03 Aligned_cols=284 Identities=9% Similarity=0.087 Sum_probs=160.1
Q ss_pred eEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe----------CCCcEEEEeCCCCceeEEEecCCC-----C
Q 001776 578 YLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWDMDNVNLLASIDADGG-----L 642 (1015)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~-----~ 642 (1015)
+++++|..+++.+-.+.... ...+..+|+++.+++++ ..-.|.+||..+-.+...+..... .
T Consensus 18 rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 59999999998887776543 34467899999998754 233699999999988887765432 1
Q ss_pred CCcceEEEcCCCCEEEEEe--CCCcEEEEEccCCceeeeeecCCccccccccccceeccccccccccccccccccccccc
Q 001776 643 QASPCIRFNKEGILLAVST--NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERT 720 (1015)
Q Consensus 643 ~~v~~v~~s~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1015)
......+++.||++++... -..+|.|.|+... +.+.++..+..... -|
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~-kvv~ei~~PGC~~i-------------yP---------------- 144 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK-KVVGEIDTPGCWLI-------------YP---------------- 144 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT-EEEEEEEGTSEEEE-------------EE----------------
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCC-ceeeeecCCCEEEE-------------Ee----------------
Confidence 2335677788888776553 3346777777766 44554433221100 00
Q ss_pred ccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEE
Q 001776 721 APAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVH 800 (1015)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i 800 (1015)
...+.+.+-+.||.+....+........... ..........+..-+++..+..++..+-+|.|
T Consensus 145 ----------------~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v 207 (342)
T PF06433_consen 145 ----------------SGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNV 207 (342)
T ss_dssp ----------------EETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEE
T ss_pred ----------------cCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEEEecCCEE
Confidence 0012355666677777777764433332221 11111223333344555555556667777777
Q ss_pred EEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc----CC-------eEEEE
Q 001776 801 KLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS----GG-------KISLF 869 (1015)
Q Consensus 801 ~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s----dg-------~i~iw 869 (1015)
+--++....... ..-|...+.......- ..+.-.-+++++....|.+.- ++ .|.++
T Consensus 208 ~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 208 YSADLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp EEEEETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred EEEeccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 776655331110 1122222211100000 112334467776555544431 11 38888
Q ss_pred eCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEE-cCCeEEEEEcccceEEEEEcC
Q 001776 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGM-EDSSIQIYNVRVDEVKTKLKG 925 (1015)
Q Consensus 870 d~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~-~dg~v~vwd~~~~~~~~~l~~ 925 (1015)
|+.+++.+.++.. ..++.+|+.+.++..+|.+.+ .++.+.+||..+|+.++++.+
T Consensus 275 D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 9999999998873 346889999995555776554 578999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=59.00 Aligned_cols=39 Identities=28% Similarity=0.507 Sum_probs=36.8
Q ss_pred CceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEE
Q 001776 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1015)
Q Consensus 874 ~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd 913 (1015)
++++.++.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00016 Score=81.08 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=127.0
Q ss_pred EEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC-----eEEEEEcCCC--
Q 001776 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTG-- 497 (1015)
Q Consensus 425 ~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg-----~v~vwd~~~~-- 497 (1015)
+|++.+..+|.|+.+|.|.+.+- +. .....+..+...+...-|.-+++. +|++-+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~--s~--~~~~~fqa~~~siv~~L~~~~~~~-~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS--SF--QLIRGFQAYEQSIVQFLYILNKQN-FLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc--cc--eeeehheecchhhhhHhhcccCce-EEEEEeecCCCCceEEEEecccccCC
Confidence 46788999999999997766653 22 222256667666333344445543 677776665 4899998632
Q ss_pred ----ceE--EEeeC-----CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC---CCCceee-ecCCCCceEEEEECCC
Q 001776 498 ----TKQ--YIFEG-----HESPVYSICPHHKENIQFIFSTATDGKIKAWLYD---NLGSRVD-YDAPGHSSTMMAYSAD 562 (1015)
Q Consensus 498 ----~~~--~~~~~-----h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~---~~~~~~~-~~~~~~~i~~~~~s~~ 562 (1015)
.++ +.+.. ...++.+++++.+- ..+++|-.+|.|..+.=+ ....... ......+|+++++..+
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 333 12222 24567778876553 789999999999988432 2222222 2233559999999998
Q ss_pred CCE-EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEe
Q 001776 563 GAR-LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASID 637 (1015)
Q Consensus 563 ~~~-l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 637 (1015)
++. ++++.. ..|.+|.+....+......+++....|..+++....+++++. ..+++|+.....+-..+.
T Consensus 183 ~~s~lFv~Tt-----~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 183 GKSVLFVATT-----EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred CceeEEEEec-----ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 887 333332 248899888444344434445558888888887765666664 469999987555444443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.9e-05 Score=75.96 Aligned_cols=245 Identities=12% Similarity=0.139 Sum_probs=136.8
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCC-CE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG-TL 432 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg-~~ 432 (1015)
.+...|..++|||...-|+..++.+..|.|.|+++...... +..| ..+++++|.-|. .+
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDLDERHV 250 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeeccCCcce
Confidence 37889999999999887899999999999999999876654 3445 899999999865 46
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEE------ecCCCceEEEEEeCCCeEEEEEcCC--CceEEEee
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF------SYPNKQLSVVTCGEDRVIKVWDAVT--GTKQYIFE 504 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~------s~~~~~~~l~s~s~dg~v~vwd~~~--~~~~~~~~ 504 (1015)
|..|...|.|.|||+...+.......-.--..+|..++. .+-+. +++..+.+ +..|++.- +.....++
T Consensus 251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~p~vle 326 (463)
T KOG1645|consen 251 IYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECLPCVLE 326 (463)
T ss_pred eEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCCCcccc
Confidence 777778999999999865433211111112233444333 23344 34443332 45666432 22222121
Q ss_pred -CCCCCEEEEeecccCCccEEEEEeCCCe------EEE-EeCCCCCceeee-cCC-CC------ceEEEEECCCCCEEEE
Q 001776 505 -GHESPVYSICPHHKENIQFIFSTATDGK------IKA-WLYDNLGSRVDY-DAP-GH------SSTMMAYSADGARLFS 568 (1015)
Q Consensus 505 -~h~~~v~~i~~~~~~~~~~l~s~~~dg~------i~v-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~~~~~l~~ 568 (1015)
+..+...++.+++..+ ..+++.-.+.+ +-. -|..++..+... ..+ +. .-..+.-.++..+++.
T Consensus 327 le~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~ 405 (463)
T KOG1645|consen 327 LEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVV 405 (463)
T ss_pred cCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEE
Confidence 1234444455544333 34444332110 000 011111111100 000 11 1112223455666665
Q ss_pred EeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC-CCCEEEEEeCCCcEEEEeCC
Q 001776 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT-TKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 569 ~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~-~~~~l~~~~~dg~i~vwd~~ 628 (1015)
.+. ..+.+.+||..+++.++++.... ++..++... ++.-++..=.|..++||..+
T Consensus 406 ~gd---~tn~lil~D~~s~evvQ~l~~~e--pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 406 VGD---STNELILQDPHSFEVVQTLALSE--PVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecC---CcceeEEeccchhheeeecccCc--ceeecceeecCCcchhhheecceEEEEecC
Confidence 542 35679999999999999887763 677766543 34334434445678887644
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0061 Score=64.37 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=141.1
Q ss_pred EEeccCCCeEEEEEecCC--eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCC-CCEEEEEEccCCCEEEEEEC
Q 001776 362 MDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT-ASVNRVMWSPDGTLFGVAYS 438 (1015)
Q Consensus 362 ~~~sp~g~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~ 438 (1015)
=+|.+||++||..+..|| .+.+.|+.+++... |..+. .......++|+++.++-...
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~ 100 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN 100 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence 367899998999888776 47777888887665 23322 22224677898888877766
Q ss_pred CCeEEEEEccCCceeeeeeEEecccCceeEEEEe--cCCCceEEEEEe----------------------CCCeEEEEEc
Q 001776 439 KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS--YPNKQLSVVTCG----------------------EDRVIKVWDA 494 (1015)
Q Consensus 439 dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s--~~~~~~~l~s~s----------------------~dg~v~vwd~ 494 (1015)
...|+-.|+.+.+... .+......+-...|. .|+. .++..- ....|.--|+
T Consensus 101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 7788888998876432 344455555556664 3444 332221 1124555677
Q ss_pred CCCceEEEeeCCCCCEEEEeecccCCccEEEEEeC---CCe-EEEEeCCCCCceee-ecC--CCCceEEEEECCCCCEEE
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGK-IKAWLYDNLGSRVD-YDA--PGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---dg~-i~vwd~~~~~~~~~-~~~--~~~~i~~~~~s~~~~~l~ 567 (1015)
.+|+....+. -...+..+.|+|..+ .+|.-|-+ +.. -|+|-+++...... ... ....+.-=-|.|||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7776655444 455677788887654 34444332 221 36676655433221 111 222444456899999887
Q ss_pred EEee-CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC----------------cEEEEeCCCC
Q 001776 568 SCGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----------------MIKFWDMDNV 630 (1015)
Q Consensus 568 ~~~~-d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg----------------~i~vwd~~~~ 630 (1015)
.-+. .+..+..|.-+|+.+++........ ...-.-.++||.+++-=|.|. -|+++++..+
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 7554 3344567888899888654433221 334456678888777644432 4677888776
Q ss_pred ceeEEEecC------CCCC--CcceEEEcCCCCEEEEEe-CCCcEEEEEc
Q 001776 631 NLLASIDAD------GGLQ--ASPCIRFNKEGILLAVST-NDNGIKILAN 671 (1015)
Q Consensus 631 ~~~~~~~~~------~~~~--~v~~v~~s~~~~~l~~~~-~dg~i~iw~~ 671 (1015)
......... .+.. .=....|+|||++++..| ..|...||-+
T Consensus 331 ~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 RFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 654322210 0000 124689999998877555 6677777654
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.15 E-value=6e-05 Score=81.63 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCCCCceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCE
Q 001776 342 TDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421 (1015)
Q Consensus 342 ~~~~~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 421 (1015)
.+.+....+..+...+.|.|++++|+.+ .++.|+.||+|.+||...+.... ....-.+
T Consensus 245 r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~~---------------------~ka~~~P 302 (545)
T PF11768_consen 245 RNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTLL---------------------AKAEFIP 302 (545)
T ss_pred cCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeeee---------------------eeecccc
Confidence 3344555666778999999999999999 67999999999999987774332 2234568
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEEccCC
Q 001776 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 422 ~~l~~spdg~~las~~~dg~v~iwd~~~~ 450 (1015)
+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 303 ~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 303 TLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 89999999999999999999999998643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00048 Score=77.44 Aligned_cols=202 Identities=13% Similarity=0.155 Sum_probs=129.3
Q ss_pred EeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCC-EEEEEEccCCCEEEEEECCC-
Q 001776 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS-VNRVMWSPDGTLFGVAYSKH- 440 (1015)
Q Consensus 363 ~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~spdg~~las~~~dg- 440 (1015)
+|++.+. .+|.|+.+|.|.+.+-.-. .++. +..+... |..+-...+..+|++.+.|+
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~~-~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSFQ-LIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ 88 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccce-eeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence 4566666 7899999998888773221 1111 3444455 44444444446788777664
Q ss_pred ----eEEEEEccCC------ceeeeeeEEe----cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC----CCceEEE
Q 001776 441 ----IVHLYTYHGG------DELRNHLEIE----AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV----TGTKQYI 502 (1015)
Q Consensus 441 ----~v~iwd~~~~------~~~~~~~~~~----~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~----~~~~~~~ 502 (1015)
.++||+++.- .++.....+. ....++.+++.+.+-+ .+|.|-.+|.|..+.-+ .|....-
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence 4899998642 2221111111 1356789999999877 79999999999988422 1222222
Q ss_pred eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce-eeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEE
Q 001776 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 503 ~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
......+|+.+++..++ ..++-+.....|.+|.+....+. .....++....|..+++....+++++. ..+.+
T Consensus 167 ~~~~~~pITgL~~~~d~--~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-----e~l~f 239 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDG--KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-----EFLYF 239 (933)
T ss_pred eccCCCCceeeEEecCC--ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-----ceEEE
Confidence 22346789999987655 34333444567889998855533 336677778999999887775666653 25999
Q ss_pred EeCCCCeeeEEee
Q 001776 582 WNESEGAVKRTYH 594 (1015)
Q Consensus 582 wd~~~~~~~~~~~ 594 (1015)
|+.....+...+.
T Consensus 240 Y~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 240 YDSDGRGPCFAFE 252 (933)
T ss_pred EcCCCcceeeeec
Confidence 9988766666666
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-05 Score=82.43 Aligned_cols=113 Identities=6% Similarity=0.068 Sum_probs=87.6
Q ss_pred EEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001776 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 555 ~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 634 (1015)
+-..|+|...++++++.+....+.+.||- .+|++.+...-.- .++++||+|..-.++.|-+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--ehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 34579999999999887777777788874 4566443322211 34579999998788888889999999988766555
Q ss_pred EEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 635 SIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 635 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
....| ..+|..+.||++|..++++..-|.+.+|...
T Consensus 96 v~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55434 7789999999999999999999999999876
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0051 Score=64.91 Aligned_cols=228 Identities=11% Similarity=0.036 Sum_probs=112.2
Q ss_pred EEEccCCCEEEEEEC-CC--eEEEEEccCCceeeeeeEEeccc-CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce
Q 001776 424 VMWSPDGTLFGVAYS-KH--IVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1015)
Q Consensus 424 l~~spdg~~las~~~-dg--~v~iwd~~~~~~~~~~~~~~~h~-~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~ 499 (1015)
=+|.+||+.|+.++. || .+.+.|+.+++..+ |.... .......++++++ .++-......++-.|+++.+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 367889987777665 44 57777888876443 44332 2233566778887 565555667899999999877
Q ss_pred EEEeeCCCCCEEEEeecccCCccEEEEEe----------------------CCCeEEEEeCCCCCceeeecCCCCceEEE
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTA----------------------TDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~----------------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 557 (1015)
...+......+-...|....++..++-.- ....|.-.|+.+++....+. ...++.-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 66666555555555555455555544321 11234455666655444443 45578889
Q ss_pred EECCCCCEEEEEeeCCCCCc---eEEEEeCCCCeeeEEeeCCC-CCCeEEEEEeCCCCEEEEEe-----CCCcEEEEeCC
Q 001776 558 AYSADGARLFSCGTNKEGES---YLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAG-----DEFMIKFWDMD 628 (1015)
Q Consensus 558 ~~s~~~~~l~~~~~d~~~~~---~i~iwd~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~-----~dg~i~vwd~~ 628 (1015)
.|+|....+++-+..+.-+. +|++.+... ...+.+..+. ...+.-=-|.|||..|.--+ .+..|.-+|+.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99997665555444333222 355555433 3333333222 22344456899998776533 24467778888
Q ss_pred CCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 629 NVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 629 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
+++........ ...-...++||++++-=+.|
T Consensus 273 t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 88665444322 23455567888888754444
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=79.48 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=91.3
Q ss_pred ceeEEEeccCCCeeEEEeccCCCeEEEEE----ecCCe----EEEEEcCCcceEeEeeeEEEeccCCCccccccccccCC
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVG----TNMGD----VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYT 418 (1015)
Q Consensus 347 ~~~~~~~~h~~~V~~~~~sp~g~~lla~g----~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 418 (1015)
-+++....-+....++.||-...+.+.+- +.+|. -.+|++..++..+. .+ +--...
T Consensus 196 lEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-sv---------------tsipL~ 259 (545)
T PF11768_consen 196 LEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SV---------------TSIPLP 259 (545)
T ss_pred EEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EE---------------EEEecC
Confidence 35555555666778889987554444442 22443 34566655443221 11 122467
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
..|.|++++|+.+.|+.|+.||+|.+||...+... +....-..+.++|+|+|. ++++|+..|.+.+||+.-..
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 89999999999999999999999999999876322 223445678999999999 89999999999999976543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0038 Score=71.47 Aligned_cols=195 Identities=11% Similarity=0.068 Sum_probs=116.5
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCC------CEE--EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCC
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHES------PVY--SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAP 550 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~------~v~--~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 550 (1015)
.++.++.++.+.-.|..+|+.+.++..... .+. .+.+ .++..++.++.++.|..+|.++++....+...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~---~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY---WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE---ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 467778889999999999998877654322 010 0111 11147888889999999999998888776554
Q ss_pred CCc--eEEEEECC--CCCEEEEEeeCCC-----CCceEEEEeCCCCeeeEEeeCCCCC-------------------Ce-
Q 001776 551 GHS--STMMAYSA--DGARLFSCGTNKE-----GESYLVEWNESEGAVKRTYHGLGKR-------------------SV- 601 (1015)
Q Consensus 551 ~~~--i~~~~~s~--~~~~l~~~~~d~~-----~~~~i~iwd~~~~~~~~~~~~~~~~-------------------~i- 601 (1015)
... -..+.-+| .+..++.++.+.+ .++.+..+|..+|+.+-.+...... .+
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 321 00111111 1244555443221 2457899999999888776543110 01
Q ss_pred EEEEEeCCCCEEEEEeCCC------------------cEEEEeCCCCceeEEEecCCCCC----CcceEEEc----CCCC
Q 001776 602 GVVQFDTTKNRFLAAGDEF------------------MIKFWDMDNVNLLASIDADGGLQ----ASPCIRFN----KEGI 655 (1015)
Q Consensus 602 ~~v~~~~~~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~----~v~~v~~s----~~~~ 655 (1015)
...++.+.+..++.++.++ .|.-+|..+|+.+-..+...+.. ......+. -+|.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234555567788887665 68888999998887765321110 00111111 1333
Q ss_pred ---EEEEEeCCCcEEEEEccCCce
Q 001776 656 ---LLAVSTNDNGIKILANADGIR 676 (1015)
Q Consensus 656 ---~l~~~~~dg~i~iw~~~~~~~ 676 (1015)
.++.++.+|.+..+|..+|+.
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcE
Confidence 566777888888888888843
|
The alignment model contains an 8-bladed beta-propeller. |
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-06 Score=63.51 Aligned_cols=53 Identities=32% Similarity=0.565 Sum_probs=42.3
Q ss_pred cHHHHHHHhhcccHHHHHHHhcCCccccCCcchhHHHHHHHHHHHHHHHhccCH
Q 001776 37 NMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKRDR 90 (1015)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~ 90 (1015)
++..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 367899999999999999999888333222222 49999999999999998764
|
Alpha-helical motif of unknown function. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0001 Score=82.89 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=132.3
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 450 (1015)
-++.|+....+..+|+.+.+..+...+ ..+.|+-++ .+++++.+|...|+|.+-|.++-
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-------------------~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNV-------------------SASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeec-------------------cCCceEEEE--ecCcEEEeecccceEEeecCCcC
Confidence 467777777888899988877664222 122344444 46899999999999999999987
Q ss_pred ceeeeeeEEecccCceeEEEEecCCCceEEEEEeC---------CCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCc
Q 001776 451 DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE---------DRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521 (1015)
Q Consensus 451 ~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~---------dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 521 (1015)
+.+. ++..|.+.|.++.. .|+ .|++||. |.-|+|||++.-+.+.-+.-+.++ .-+.|+|.-.
T Consensus 208 ~~ih---t~~aHs~siSDfDv--~GN--lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~- 278 (1118)
T KOG1275|consen 208 ETIH---TFDAHSGSISDFDV--QGN--LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT- 278 (1118)
T ss_pred ceee---eeeccccceeeeec--cCC--eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc-
Confidence 7666 89999999987665 477 7888874 557899999988777666555444 4467777665
Q ss_pred cEEEEEeCCCeEEEEe---CCCCCc-eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 522 QFIFSTATDGKIKAWL---YDNLGS-RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 522 ~~l~s~~~dg~i~vwd---~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
..+++++..|...+-| +.+... .......+..+..+++++++..++.+-. ++.|.+|..
T Consensus 279 t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~----~g~v~~wa~ 341 (1118)
T KOG1275|consen 279 TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH----EGHVNLWAD 341 (1118)
T ss_pred ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecc----cCcEeeecC
Confidence 5788888899999988 443322 2334444556999999999999999854 456999973
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0097 Score=67.19 Aligned_cols=250 Identities=15% Similarity=0.121 Sum_probs=137.3
Q ss_pred eeEEEeccCCCeEEEEEecCCe----EEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 359 VKSMDFHPVQQILLVVGTNMGD----VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 359 V~~~~~sp~g~~lla~g~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
+....+||+|++++++-+..|. ++++|+.+|+.+.. .+ .. ..-..+.|.+|++.|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence 3467899999977766566554 99999999977653 11 11 1122399999999877
Q ss_pred EEECCC-----------eEEEEEccCCceeeeeeEEecccCc--eeEEEEecCCCceEEEEEeCC---CeEEEEEcCCC-
Q 001776 435 VAYSKH-----------IVHLYTYHGGDELRNHLEIEAHVGS--VNDLAFSYPNKQLSVVTCGED---RVIKVWDAVTG- 497 (1015)
Q Consensus 435 s~~~dg-----------~v~iwd~~~~~~~~~~~~~~~h~~~--V~~~~~s~~~~~~~l~s~s~d---g~v~vwd~~~~- 497 (1015)
....+. .|+.|.+.++..-. ...+...... ...+..++|++.+ ++..... ..+.+.|+..+
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l-~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYL-FISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEE-EEEEESSSSEEEEEEEECCCTT
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEE-EEEEEccccCCeEEEEeccccC
Confidence 665332 37777776654321 1234444433 5688899999953 3333322 35788888764
Q ss_pred ---ceEEEeeCCCCCE-EEEeecccCCccEEEEEe---CCCeEEEEeCCCCCc---eeeecCCCCceEEEEECCCCCEEE
Q 001776 498 ---TKQYIFEGHESPV-YSICPHHKENIQFIFSTA---TDGKIKAWLYDNLGS---RVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 498 ---~~~~~~~~h~~~v-~~i~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
.....+......+ ..+... + +.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~--~-~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH--G-DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE--T-TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc--C-CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 2333333333333 333322 2 23444332 345677777776653 223333343323333334455666
Q ss_pred EEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEE--Ee--CCCcEEEEeCCCCceeE
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA--AG--DEFMIKFWDMDNVNLLA 634 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~--~~--~dg~i~vwd~~~~~~~~ 634 (1015)
..... ++...|.++++..+...........+.+..+...++++.+.. .| .-++++.||+.+++...
T Consensus 341 l~~~~-~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 341 LSYRE-NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEEE-TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEEE-CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 55443 446789999998455555555544435566655565554433 22 34678888988887543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00029 Score=78.61 Aligned_cols=185 Identities=14% Similarity=0.159 Sum_probs=123.6
Q ss_pred cEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCE
Q 001776 778 RVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSY 857 (1015)
Q Consensus 778 ~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~ 857 (1015)
.+.+.+++ +++++.|+-+|.+.+++.+.. . ...+. |... ..+|.+
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~-~~~~~---~s~~------~~~Gey 85 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------P-KTNFD---HSSS------ILEGEY 85 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------c-ccccc---cccc------ccCCce
Confidence 34444444 567999999999999865421 0 00000 2221 568999
Q ss_pred EEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCC-----CcEEEEEEcCCeEEEEEccc-c-eEEEEEcCccCC
Q 001776 858 VMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQD-----NNIIAIGMEDSSIQIYNVRV-D-EVKTKLKGHQKR 929 (1015)
Q Consensus 858 la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d-----~~~la~g~~dg~v~vwd~~~-~-~~~~~l~~h~~~ 929 (1015)
+++++ ||+|.|-.+-+.+...++. ...++.+++++| + .+.+++|+.-| +.++.-.= | +.-..+..-.++
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~ 162 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP 162 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence 99999 9999999998888777666 567899999999 5 46788898888 77765321 1 111145566789
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001776 930 ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1015)
Q Consensus 930 v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~ 1006 (1015)
|.++.|. |+++|-++.+| |+|+|+.+++.... +..+.+.......-..+.|.++.+ |+.|-..+|.|..++
T Consensus 163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 9999995 88999999888 99999998664321 222222111112334677876655 677756678887776
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00047 Score=76.93 Aligned_cols=184 Identities=12% Similarity=0.146 Sum_probs=128.7
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
..++|++++ ++.|+.|+.+|.|++++....- + +...|+.. ..+|. +++|||.||+|.|-.+-+.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~---~~~~~s~~------~~~Ge--y~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--K---TNFDHSSS------ILEGE--YVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--c---cccccccc------ccCCc--eEEEecCCCcEEEeeccCCc
Confidence 566777775 6789999999999999877532 2 22335444 56788 89999999999999999888
Q ss_pred eEEEeeCCCCCEEEEeeccc---CCccEEEEEeCCCeEEEEeCCCCCc--eeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 499 KQYIFEGHESPVYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGS--RVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
...++. ...++.+++++|+ ...+.+++|+.-| +.++.-+-.+. ........++|.++.|. |++++-+...|
T Consensus 105 ~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 105 EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC
Confidence 877776 4578999998876 2235788999888 76764332222 22344456689999995 67888877655
Q ss_pred CCCceEEEEeCCCCeeeEEeeCCCCC-----CeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 574 EGESYLVEWNESEGAVKRTYHGLGKR-----SVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 574 ~~~~~i~iwd~~~~~~~~~~~~~~~~-----~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
+++||..+++.+..+...... ....+.|.++.+.++ |=. .+|+|..++
T Consensus 181 -----v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 181 -----VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWG-DSVKICSIK 233 (846)
T ss_pred -----cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecC-CeEEEEEEe
Confidence 999999998877766544321 123467776654443 332 367777776
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.066 Score=61.59 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=42.6
Q ss_pred CeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCc
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h 926 (1015)
|.|.-+|+.+++.+-..........+.... .+.+++.++.||.++.+|.++|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457788888888887765332222222222 3447777888999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=73.06 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=120.3
Q ss_pred EecccCceeEEEEecCCCceEEEEEeCC--CeEEEEEcCCCceEEEe--eCCCCCEEEEeecccCCccEEEEEeCCCeE-
Q 001776 459 IEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQYIF--EGHESPVYSICPHHKENIQFIFSTATDGKI- 533 (1015)
Q Consensus 459 ~~~h~~~V~~~~~s~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i- 533 (1015)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++..... .++. ..-.|+|++. .++++...||..
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~-~l~f~~~rdg~~~ 263 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGS-KLAFSSSRDGSPD 263 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCC-EEEEEECCCCCcc
Confidence 4444556777899999985333322222 36999999988655444 3333 2345665553 455666777774
Q ss_pred -EEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCE
Q 001776 534 -KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNR 612 (1015)
Q Consensus 534 -~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 612 (1015)
.+.|+....... +......-..-.|+|||+.++..+ |+.+...|.+++.+.+...+....... . ..-.++|||++
T Consensus 264 iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~-~-~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG-N-SNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC-C-cCccCCCCCCE
Confidence 455666544322 333333334678999999999986 456677899999887765333222222 2 25679999999
Q ss_pred EEEEeC-CCc--EEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 613 FLAAGD-EFM--IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 613 l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
++..+. +|. |.+.|+.++..+..+... .....-.|.++|..+...+..
T Consensus 340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~---~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 340 IVFESSSGGQWDIDKNDLASGGKIRILTST---YLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEeccCCceeeEEeccCCCCcEEEcccc---ccCCCCCcCCCCceEEEeccC
Confidence 988774 344 777777766655555432 233456788888887765543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0087 Score=68.55 Aligned_cols=245 Identities=13% Similarity=0.096 Sum_probs=139.9
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc--CCCEEEEEE---------CC
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAY---------SK 439 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~---------~d 439 (1015)
.++.++.+|.|+-+|..+|+.+-. .... .+...-..+.-+| .+..++.++ .+
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~-------~~~~----------~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~ 174 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWK-------FGNN----------DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVR 174 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeee-------ecCC----------CCcCcceEecCCCEEECCEEEEeccccccccCCCC
Confidence 466778899999999999987643 2111 1100000111112 123444443 36
Q ss_pred CeEEEEEccCCceeeeeeEEecc----------------c-Cce-eEEEEecCCCceEEEEEeCCC--------------
Q 001776 440 HIVHLYTYHGGDELRNHLEIEAH----------------V-GSV-NDLAFSYPNKQLSVVTCGEDR-------------- 487 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~h----------------~-~~V-~~~~~s~~~~~~~l~s~s~dg-------------- 487 (1015)
|.+..+|..+|+.+......... . ..| ...++.+.+. .++.++.++
T Consensus 175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g--~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN--LVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC--EEEEECCCCCCCccCCccCCCCC
Confidence 78899999999876643211100 0 011 1234444455 566666554
Q ss_pred ----eEEEEEcCCCceEEEeeCCCCCEEE------Eeecc--cCCc---cEEEEEeCCCeEEEEeCCCCCceeeecCCCC
Q 001776 488 ----VIKVWDAVTGTKQYIFEGHESPVYS------ICPHH--KENI---QFIFSTATDGKIKAWLYDNLGSRVDYDAPGH 552 (1015)
Q Consensus 488 ----~v~vwd~~~~~~~~~~~~h~~~v~~------i~~~~--~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 552 (1015)
.|.-.|.++|+.+..++.-...... ..+.. .-++ ..++.++.+|.+...|..+++.+.......
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~- 331 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE- 331 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-
Confidence 7999999999999876521111110 01100 0112 267888899999999999988876654321
Q ss_pred ceEEEEECCCCCEEEEEeeC--------------CCCCceEEEEeCCCCeeeEEeeCCCC-------CCeEEEEEeCCCC
Q 001776 553 SSTMMAYSADGARLFSCGTN--------------KEGESYLVEWNESEGAVKRTYHGLGK-------RSVGVVQFDTTKN 611 (1015)
Q Consensus 553 ~i~~~~~s~~~~~l~~~~~d--------------~~~~~~i~iwd~~~~~~~~~~~~~~~-------~~i~~v~~~~~~~ 611 (1015)
..++.+| ..++....+ ....+.+.-.|..+|+.+-....... .....-.....+.
T Consensus 332 --~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~ 407 (488)
T cd00216 332 --QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGN 407 (488)
T ss_pred --cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCC
Confidence 1233444 333332210 11245688889999987766654310 0111011122457
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001776 612 RFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 612 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
.+++++.||.|+.+|..+|+.+-..+..
T Consensus 408 ~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 408 LVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEEEECCCCeEEEEECCCCceeeEEECC
Confidence 8888999999999999999999888753
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0081 Score=59.07 Aligned_cols=254 Identities=12% Similarity=0.134 Sum_probs=143.6
Q ss_pred EEEEEeCCCCE-EEEEeCCCc-EEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEccCC
Q 001776 602 GVVQFDTTKNR-FLAAGDEFM-IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (1015)
Q Consensus 602 ~~v~~~~~~~~-l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1015)
..++++|.... ++.+-.-|+ ..++|....+.+.++....+....-.=+|||||.+|...-+| |.|-|||...+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 34677776543 344444444 678999888877776544322223345799999999866433 57778877654
Q ss_pred ceeeeeecCCccccccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeee
Q 001776 675 IRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIW 754 (1015)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw 754 (1015)
.+.+..+..
T Consensus 151 fqrvgE~~t----------------------------------------------------------------------- 159 (366)
T COG3490 151 FQRVGEFST----------------------------------------------------------------------- 159 (366)
T ss_pred cceeccccc-----------------------------------------------------------------------
Confidence 222222211
Q ss_pred eeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEe-eccccCCCCCCceecccCceecCCCCCccc
Q 001776 755 KLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW-KWPRNERNSTGKATTNQAPQLWQPPSGILM 833 (1015)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 833 (1015)
|.-.-..+.+.+||+.++.+.. -|..- +..+.+.+.+.- ..++.+.|..+|.++
T Consensus 160 --------------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~li 214 (366)
T COG3490 160 --------------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLI 214 (366)
T ss_pred --------------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchh
Confidence 2333346778899998887653 34333 332222222211 123566777788765
Q ss_pred cc-cCCCCCCCCCccEEEEccCCCEEEEEc-CCe-----EEEEeCCCCceeEEeCCC-------CCCeeEEEEcCCCCcE
Q 001776 834 TN-DISDTNPEDAVPCFALSKNDSYVMSAS-GGK-----ISLFNMMTFKTMTTFMPP-------PPAATFLAFHPQDNNI 899 (1015)
Q Consensus 834 ~~-~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~-----i~iwd~~~~~~~~~l~~~-------~~~i~~l~~sp~d~~~ 899 (1015)
.+ .++..-+.-.|..++..+||+.++.+- .|. .-+=-...++.+.-+... ..-|-+++.+..++-.
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 43 344223566788888888888776553 211 111122234444433322 2247788888745555
Q ss_pred EEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001776 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 900 la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd 955 (1015)
.++.-..+..-+||..+|.++..-.-. ....|+- ...-++..+.+|.+.++.
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 555556667889999999877543211 1222332 334456666778777763
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0066 Score=66.29 Aligned_cols=275 Identities=13% Similarity=0.079 Sum_probs=140.3
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAY 437 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~ 437 (1015)
.|+.+.|+++.. -|++|...|.|.||.+..++.-.. .....-....+.+- ..
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~---------------------~~~~~~~~~~~~~~------~~ 54 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGN---------------------REQPPDLDYNFRRF------SL 54 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE---------------------------------------S--------G
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCc---------------------cCCCcccCcccccc------cc
Confidence 588999999876 578899999999999876542210 00001111111110 00
Q ss_pred CCCeEEEEEccC---C---ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe--eC----
Q 001776 438 SKHIVHLYTYHG---G---DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF--EG---- 505 (1015)
Q Consensus 438 ~dg~v~iwd~~~---~---~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~---- 505 (1015)
.++.-.+-|+.. . +-+.+..-+....++|++++.|.-| +++.|..+|.+.|.|++....+..- ..
T Consensus 55 ~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 55 NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 111122333322 1 1244444566678999999998666 7999999999999999877777652 22
Q ss_pred --CCCCEEEEeec---ccCCc---cEEEEEeCCCeEEEEeCCC-CCcee--e----ecCCCCceEEEE-ECCC-C-----
Q 001776 506 --HESPVYSICPH---HKENI---QFIFSTATDGKIKAWLYDN-LGSRV--D----YDAPGHSSTMMA-YSAD-G----- 563 (1015)
Q Consensus 506 --h~~~v~~i~~~---~~~~~---~~l~s~~~dg~i~vwd~~~-~~~~~--~----~~~~~~~i~~~~-~s~~-~----- 563 (1015)
....|+++.|. ..+|+ -.+++|...|.+.+|.+.- ..... . ...+...+..+. ++.+ |
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccC
Confidence 23457777664 23333 4788899999999997752 11111 1 112333444333 3211 1
Q ss_pred ---------------CEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEe-----CCCCEEEEEeCCCcEE
Q 001776 564 ---------------ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFD-----TTKNRFLAAGDEFMIK 623 (1015)
Q Consensus 564 ---------------~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~-----~~~~~l~~~~~dg~i~ 623 (1015)
.++++++. ..++++...+.+..++.....- ....+++- ..+..|++-..+|.|+
T Consensus 212 t~~~~~~l~~g~~i~g~vVvvSe-----~~irv~~~~~~k~~~K~~~~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 212 TISAMQGLSKGISIPGYVVVVSE-----SDIRVFKPPKSKGAHKSFDDPF-LCSSASVVPTISRNGGYCLVCLFNNGSIR 285 (395)
T ss_dssp BHHHHHGGGGT----EEEEEE-S-----SEEEEE-TT---EEEEE-SS-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEE
T ss_pred chhHhhccccCCCcCcEEEEEcc-----cceEEEeCCCCcccceeecccc-ccceEEEEeecccCCceEEEEEECCCcEE
Confidence 14444442 2499999888776665542211 23334442 3456777888999999
Q ss_pred EEeCCCCceeEEEecCCC--CCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001776 624 FWDMDNVNLLASIDADGG--LQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 624 vwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 670 (1015)
+|.+..-+.+..+..... ...+....++++|..++-.+.. .+.++.
T Consensus 286 i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 286 IYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp EEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred EEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEE
Confidence 999999998888876421 1235567778888876655433 444443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0035 Score=69.38 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=84.4
Q ss_pred CcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCccccccccccceecccccccccccccccccccccccccc
Q 001776 644 ASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723 (1015)
Q Consensus 644 ~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1015)
.|.--+++..+++++.|+.-|.+++|+-..+........+.....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~----------------------------------- 79 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT----------------------------------- 79 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceE-----------------------------------
Confidence 344455667789999999999999999887743333332211110
Q ss_pred cccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEe
Q 001776 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLW 803 (1015)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw 803 (1015)
....+ .++..+++.|+..|.|.++.+.. ..+.....+..-...|...|++++|++|+..+.+|...|.|..-
T Consensus 80 -~~~~v------s~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 80 -CVRSV------SSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred -EEEEe------cchhHhhhhhcCCceEEeehhhc-cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence 11111 23456778888889999998887 44444444444445689999999999999999999999999887
Q ss_pred eccc
Q 001776 804 KWPR 807 (1015)
Q Consensus 804 ~~~~ 807 (1015)
.++.
T Consensus 152 ~L~s 155 (726)
T KOG3621|consen 152 ELDS 155 (726)
T ss_pred Eech
Confidence 6653
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.81 E-value=3e-05 Score=51.28 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHhhhcChHHHHHHHHHhcCCC
Q 001776 4 LSRELVFLILQFLDEEKFKETVHKLEQDSGFF 35 (1015)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1015)
.++++.++|+|||..+||..|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.01 Score=59.89 Aligned_cols=192 Identities=7% Similarity=0.093 Sum_probs=111.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
-...+..++|.|+...|+++....+.|...+. +|+.++..+ +.+ -+..-.|++..++.+++
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl 80 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL 80 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence 34569999999998889999999999999997 467665422 223 35778899988888887
Q ss_pred EEECCCeEEEEEccCCce---eeeee--EEe---cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC---CceEEE-
Q 001776 435 VAYSKHIVHLYTYHGGDE---LRNHL--EIE---AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT---GTKQYI- 502 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~---~~~~~--~~~---~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~---~~~~~~- 502 (1015)
+--.++.+.++++..... ..... .+. .++..+-.++|.+.++. |+.+-...-..++.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence 776789999998843221 11111 111 35567899999999884 44555555566666543 222211
Q ss_pred -e------eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC---------CceEEEEECCCCCEE
Q 001776 503 -F------EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---------HSSTMMAYSADGARL 566 (1015)
Q Consensus 503 -~------~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l 566 (1015)
. ......+.++.+++. .+++++....+..|..+| ..++....+.... .+.-.++|.++|+..
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 1 123345788888875 447888888889999998 4444443333222 257789999999766
Q ss_pred EEE
Q 001776 567 FSC 569 (1015)
Q Consensus 567 ~~~ 569 (1015)
++.
T Consensus 237 Ivs 239 (248)
T PF06977_consen 237 IVS 239 (248)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=97.77 E-value=4e-05 Score=46.56 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhc
Q 001776 6 RELVFLILQFLDEEKFKETVHKLEQDS 32 (1015)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1015)
+++-+||++||.++||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0039 Score=68.78 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=112.7
Q ss_pred ccCCCCEEEEEEccCCCEEEEEE---CC-CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCe--
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAY---SK-HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRV-- 488 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~---~d-g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~-- 488 (1015)
..-...+..-+|+|+++.++... .. ..+.++++.+++..... .+.++ -..-+|+|||+. ++++...||.
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~-~~~g~---~~~P~fspDG~~-l~f~~~rdg~~~ 263 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL-NFNGN---NGAPAFSPDGSK-LAFSSSRDGSPD 263 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee-ccCCc---cCCccCCCCCCE-EEEEECCCCCcc
Confidence 34456777889999999876652 23 46899999998755422 23344 445689999996 5666667775
Q ss_pred EEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEE-EeCCCeEE--EEeCCCCCceeeecCCCCceEEEEECCCCCE
Q 001776 489 IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS-TATDGKIK--AWLYDNLGSRVDYDAPGHSSTMMAYSADGAR 565 (1015)
Q Consensus 489 v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s-~~~dg~i~--vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 565 (1015)
|++.|+..+. ...+.. ...+.. ..+.+++|+.++. .+..|.-. +++.+.... ..+......-....|+|||++
T Consensus 264 iy~~dl~~~~-~~~Lt~-~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~ 339 (425)
T COG0823 264 IYLMDLDGKN-LPRLTN-GFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDK 339 (425)
T ss_pred EEEEcCCCCc-ceeccc-CCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCE
Confidence 5556766665 333442 222222 2233455566654 44556544 445554333 223333333337789999999
Q ss_pred EEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEe
Q 001776 566 LFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG 617 (1015)
Q Consensus 566 l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~ 617 (1015)
++..+.. .+...|.+.|+.++...+.+.... ....-++.+++..++..+
T Consensus 340 i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~~~--~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 340 IVFESSS-GGQWDIDKNDLASGGKIRILTSTY--LNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEecc-CCceeeEEeccCCCCcEEEccccc--cCCCCCcCCCCceEEEec
Confidence 9988744 223457777777665444433321 222346778887776655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0047 Score=68.39 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=116.1
Q ss_pred cCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcC
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495 (1015)
Q Consensus 416 ~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~ 495 (1015)
...-....++++|+|+++++ +.||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.++.--
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNF 97 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcC
Confidence 34456789999999999999 45677777773332 21 1224456788998665 6777778899997422
Q ss_pred CCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 496 TGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 496 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
+.+....+.. ...+..+-. |.+|+..+. +.|.+||+.+.+.+..+... .|..+.|+++|++++..+.+.
T Consensus 98 ~~~~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-- 166 (443)
T PF04053_consen 98 KNEVVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-- 166 (443)
T ss_dssp EE-TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S--
T ss_pred ccccceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe--
Confidence 2222223332 223444422 456666554 48999999998887777654 488999999999999987542
Q ss_pred CceEEEEeCCCC---------e--eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCC
Q 001776 576 ESYLVEWNESEG---------A--VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQA 644 (1015)
Q Consensus 576 ~~~i~iwd~~~~---------~--~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 644 (1015)
+.+++.... - ....+.... ..|.+.+|..+ .++-.... .++. +..|+.-..-.. ..+
T Consensus 167 ---i~il~~~~~~~~~~~~~g~e~~f~~~~E~~-~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~l---d~~ 234 (443)
T PF04053_consen 167 ---IYILKYNLEAVAAIPEEGVEDAFELIHEIS-ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHL---DKP 234 (443)
T ss_dssp ---EEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE----SS-
T ss_pred ---EEEEEecchhcccccccCchhceEEEEEec-ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEc---CCc
Confidence 666654322 0 112221111 26777888765 44433333 6665 334432222221 235
Q ss_pred cceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 645 SPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 645 v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
+.-+.+.+..+.+.....|+.+..+.+...
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred eEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 666777777778888888888888877543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.039 Score=63.41 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=46.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC--Cc-------ceEEEcCCCCEEEEEeCCCcEEEEEccCCceeee
Q 001776 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ--AS-------PCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679 (1015)
Q Consensus 610 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~v-------~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 679 (1015)
+..+++++.++.|+-.|..+|+.+-......... .. ..+++ .+..++.++.|+.+.-+|..+|+.+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 4577778888899999999999887765421110 00 11222 234677788899999999999965544
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=1.8e-05 Score=85.26 Aligned_cols=205 Identities=14% Similarity=0.216 Sum_probs=128.9
Q ss_pred cCCCeeEEEeccCCC-eEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-CCCE
Q 001776 355 QGSAVKSMDFHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-DGTL 432 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~-~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~ 432 (1015)
....+.|++++-+.+ -++++|..+|.|.+-.+....-. -..+..+|....++++|++ |.+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~ 117 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH 117 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence 344566777655433 48899999999999887543211 1112467889999999999 7788
Q ss_pred EEEEE----CCCeEEEEEccCCcee-eeeeEEec-ccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-eEEEeeC
Q 001776 433 FGVAY----SKHIVHLYTYHGGDEL-RNHLEIEA-HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFEG 505 (1015)
Q Consensus 433 las~~----~dg~v~iwd~~~~~~~-~~~~~~~~-h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~~ 505 (1015)
||.|- .|..+.|||+.++-.. +....+.+ -.....+++|..+.+ ++++|.....+.++|++... ....+
T Consensus 118 LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 118 LAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 88883 3567999999886211 11111222 334566889988877 78899999999999987322 12222
Q ss_pred CCCCEEEEeecccCCccEEEEEeCCCeEEEEe-CCCCCceeeecCC-----CCceEEEEECCCCC-EEEEEeeCCCCCce
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDAP-----GHSSTMMAYSADGA-RLFSCGTNKEGESY 578 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~~-----~~~i~~~~~s~~~~-~l~~~~~d~~~~~~ 578 (1015)
.+..+..+.+.|-.. .++++-. ||.|.+|| ....+.......+ ...+..++|+|... .+++...+ .++
T Consensus 194 nTk~vqG~tVdp~~~-nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd---S~t 268 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSP-NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD---SIT 268 (783)
T ss_pred hhhhcccceecCCCC-Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC---cce
Confidence 123344455555222 4666555 99999999 4443332221111 22588999999654 34444432 457
Q ss_pred EEEEeCC
Q 001776 579 LVEWNES 585 (1015)
Q Consensus 579 i~iwd~~ 585 (1015)
|+++|+.
T Consensus 269 Irlydi~ 275 (783)
T KOG1008|consen 269 IRLYDIC 275 (783)
T ss_pred EEEeccc
Confidence 9999875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.071 Score=59.24 Aligned_cols=135 Identities=19% Similarity=0.310 Sum_probs=80.1
Q ss_pred EEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCc-c
Q 001776 850 ALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH-Q 927 (1015)
Q Consensus 850 ~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h-~ 927 (1015)
.++.+....+... ++.+.+.+-...+. +. ..+++..|++|| +++++|.-..+|.+.|.+.+-.+.+..+... .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3455555544444 56666444333211 22 346899999999 9999999999999999987766666666543 3
Q ss_pred CCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eCCeEEEEEcC
Q 001776 928 KRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAP 1006 (1015)
Q Consensus 928 ~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~ 1006 (1015)
.....+.|.-+ |..+..|+ . . ..+-.+.+. .+.|.-++..++.. .|| ++|..-+
T Consensus 260 ~~p~~~~WCG~---------dav~l~~~--~-~----l~lvg~~~~--------~~~~~~~~~~~l~~E~DG-~riit~~ 314 (410)
T PF04841_consen 260 SPPKQMAWCGN---------DAVVLSWE--D-E----LLLVGPDGD--------SISFWYDGPVILVSEIDG-VRIITST 314 (410)
T ss_pred CCCcEEEEECC---------CcEEEEeC--C-E----EEEECCCCC--------ceEEeccCceEEeccCCc-eEEEeCC
Confidence 45567777543 33333441 1 0 011111211 35666666655555 444 7888777
Q ss_pred CceEeccC
Q 001776 1007 KLECLKQV 1014 (1015)
Q Consensus 1007 ~g~~l~~~ 1014 (1015)
+-+.++++
T Consensus 315 ~~~~l~~V 322 (410)
T PF04841_consen 315 SHEFLQRV 322 (410)
T ss_pred ceEEEEEC
Confidence 77777665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.17 Score=55.96 Aligned_cols=262 Identities=15% Similarity=0.122 Sum_probs=165.5
Q ss_pred eEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc
Q 001776 349 VVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 349 ~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 428 (1015)
....+.-......+...|++..+.++-.....+.+-+......... ...-...-..++.++
T Consensus 23 ~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~-------------------~~~g~~~p~~i~v~~ 83 (381)
T COG3391 23 VTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQS-------------------LSVGGVYPAGVAVNP 83 (381)
T ss_pred EEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeee-------------------ccCCCccccceeeCC
Confidence 3334443446778888999865655554444455444442111110 011114455788999
Q ss_pred CCCEEEEE-ECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEe-CCCeEEEEEcCCCceEEEeeCC
Q 001776 429 DGTLFGVA-YSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 429 dg~~las~-~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s-~dg~v~vwd~~~~~~~~~~~~h 506 (1015)
++..+... ..++.|.+.|..+....... ..+. ....++++++++.++++-.. .++++.+.|..+++.+.+...-
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG 159 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG 159 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEe--eecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC
Confidence 88855444 45688999997776544421 1122 56789999999853333332 3789999998888888876544
Q ss_pred CCCEEEEeecccCCccEEE-EEeCCCeEEEEeCCCCCcee-e---ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEE
Q 001776 507 ESPVYSICPHHKENIQFIF-STATDGKIKAWLYDNLGSRV-D---YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~-~---~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
..+ ..+++.+++ ..++ +-..++.|.+.|........ . .......-..+.++|+|.++++..... .+..+..
T Consensus 160 ~~P-~~~a~~p~g--~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~~~v~~ 235 (381)
T COG3391 160 NTP-TGVAVDPDG--NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-GSNNVLK 235 (381)
T ss_pred CCc-ceEEECCCC--CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC-CCceEEE
Confidence 444 677776555 5444 44578999999966544332 0 111222446788999999887765322 2357889
Q ss_pred EeCCCCeeeEE-eeCCCCCCeEEEEEeCCCCEEEEEe-CCCcEEEEeCCCCceeEEEec
Q 001776 582 WNESEGAVKRT-YHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 582 wd~~~~~~~~~-~~~~~~~~i~~v~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 638 (1015)
.|..++..... ...... ....+..+|+|..+.+.. ..+.+.+-|..+.........
T Consensus 236 id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 236 IDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 99888876665 333332 345678999999998885 558899999988877776543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.013 Score=63.95 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=112.7
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-----C
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----D 429 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d 429 (1015)
..++|++++.|.-| ++|+|..+|.+.|.|++....+....+. ....-......|+++.|+- |
T Consensus 85 ~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~-----------~~~~~~~~~~~vt~ieF~vm~~~~D 151 (395)
T PF08596_consen 85 KQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIR-----------ESFLSKSSSSYVTSIEFSVMTLGGD 151 (395)
T ss_dssp -S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGG-----------G--T-SS----EEEEEEEEEE-TTS
T ss_pred cCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccc-----------ccccccccccCeeEEEEEEEecCCC
Confidence 47999999999887 7899999999999999988888764432 0001223456789999974 3
Q ss_pred C---CEEEEEECCCeEEEEEcc--CCcee--eeeeEEecccCceeEEE-EecCCCc------------------eEEEEE
Q 001776 430 G---TLFGVAYSKHIVHLYTYH--GGDEL--RNHLEIEAHVGSVNDLA-FSYPNKQ------------------LSVVTC 483 (1015)
Q Consensus 430 g---~~las~~~dg~v~iwd~~--~~~~~--~~~~~~~~h~~~V~~~~-~s~~~~~------------------~~l~s~ 483 (1015)
+ -.|++|...|.+.+|.+. .+... ........+.++|..+. |+.+... .-++..
T Consensus 152 ~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 152 GYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp SSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred cccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 3 478999999999999875 22211 11111224667776665 3322110 013344
Q ss_pred eCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecc---cCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCC----ceEE
Q 001776 484 GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH---KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGH----SSTM 556 (1015)
Q Consensus 484 s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~----~i~~ 556 (1015)
..+..++++...+.+..++..........+++.+ ...+..|++-..+|.++++.+...+.+........ .+..
T Consensus 232 vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 4567899999888887765552222233344432 22346788889999999999988777766554321 3445
Q ss_pred EEECCCCCEEEEEe
Q 001776 557 MAYSADGARLFSCG 570 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~ 570 (1015)
..++++|..++..+
T Consensus 312 ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 312 SSISRNGDIFYWTG 325 (395)
T ss_dssp -EE-TTS-EEEE-S
T ss_pred cEECCCCCEEEEeC
Confidence 66788887666554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.062 Score=60.65 Aligned_cols=245 Identities=13% Similarity=0.136 Sum_probs=128.3
Q ss_pred CEEEEEEccCCCEEEEE-ECCC----eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC---------
Q 001776 420 SVNRVMWSPDGTLFGVA-YSKH----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--------- 485 (1015)
Q Consensus 420 ~V~~l~~spdg~~las~-~~dg----~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~--------- 485 (1015)
.+...++||||+++|.+ +..| .++++|+.+|+.+... +... ....+.|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~--i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG--IENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE--EEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc--cccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999876 3333 5999999999755421 2221 1223999999984 3333322
Q ss_pred -CCeEEEEEcCCCce--EEEeeCCCCC--EEEEeecccCCccEEEEEeC-C---CeEEEEeCCCC----CceeeecCCCC
Q 001776 486 -DRVIKVWDAVTGTK--QYIFEGHESP--VYSICPHHKENIQFIFSTAT-D---GKIKAWLYDNL----GSRVDYDAPGH 552 (1015)
Q Consensus 486 -dg~v~vwd~~~~~~--~~~~~~h~~~--v~~i~~~~~~~~~~l~s~~~-d---g~i~vwd~~~~----~~~~~~~~~~~ 552 (1015)
...|+.|.+.++.. ...+...... ...+.. +.++++++..+. . ..+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 23478888876643 2445444433 344554 455567664332 2 34677777764 12222222222
Q ss_pred ce-EEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCee---eEEeeCCCCCCeEEEEEeCCCCEEEEEe-CCC--cEEEE
Q 001776 553 SS-TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAV---KRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEF--MIKFW 625 (1015)
Q Consensus 553 ~i-~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~---~~~~~~~~~~~i~~v~~~~~~~~l~~~~-~dg--~i~vw 625 (1015)
.+ ..+... +..++..+..+.....|...++..... ...+..+.. .+.-..+...+.+|+... .++ .|+++
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE-DVSLEDVSLFKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS-SEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC-ceeEEEEEEECCEEEEEEEECCccEEEEE
Confidence 23 233333 444444444445566788888887653 223443333 222233344455565544 343 58899
Q ss_pred eCCCCceeEEEecCCCCCCcceEEEcCCCCEEEE-Ee---CCCcEEEEEccCCc
Q 001776 626 DMDNVNLLASIDADGGLQASPCIRFNKEGILLAV-ST---NDNGIKILANADGI 675 (1015)
Q Consensus 626 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~---~dg~i~iw~~~~~~ 675 (1015)
++..+.....+.... ...|..+...+++..+.. .+ .-++++.||+.+++
T Consensus 355 ~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 355 DLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp ETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 998455555555432 233455555555544432 22 33578888888874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.049 Score=55.07 Aligned_cols=162 Identities=10% Similarity=0.113 Sum_probs=86.5
Q ss_pred ccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCC
Q 001776 777 MRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDS 856 (1015)
Q Consensus 777 ~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~ 856 (1015)
+....+++..++.++++.-.++.+.++++............. - +...+. ..++..+..++|+|.++
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~-----~--------~~l~~~-~~~N~G~EGla~D~~~~ 130 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQ-----K--------ISLGFP-NKGNKGFEGLAYDPKTN 130 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEE-----E--------EE---S----SS--EEEEEETTTT
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhce-----E--------Eecccc-cCCCcceEEEEEcCCCC
Confidence 345678888888877777678888888775322111110000 0 000011 11566789999999877
Q ss_pred EEEEEc-CCeEEEEeCCC---CceeEE--------eCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEc
Q 001776 857 YVMSAS-GGKISLFNMMT---FKTMTT--------FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK 924 (1015)
Q Consensus 857 ~la~~s-dg~i~iwd~~~---~~~~~~--------l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~ 924 (1015)
.|..+- ..-..||.+.. ...+.. .......+.+++++|..+.+++....+..|..+| ..|+.+..+.
T Consensus 131 ~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 131 RLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 777776 44456666543 111111 1123345889999998888999999999999999 6677666543
Q ss_pred Ccc---------CCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001776 925 GHQ---------KRITGLAFSNTLNVLVSSGADSQLCVW 954 (1015)
Q Consensus 925 ~h~---------~~v~~l~~spdg~~l~s~s~dg~v~vW 954 (1015)
-.. ...-.|+|.++|++.+ .++-+..+++
T Consensus 210 L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 210 LDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF 247 (248)
T ss_dssp -STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred eCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence 221 2466899999996555 4455555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.029 Score=55.34 Aligned_cols=266 Identities=13% Similarity=0.132 Sum_probs=140.5
Q ss_pred eEEEEECCCCCEEEE-EeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeE-EEEEeCCCCEEEEEeC-----CCcEEEEe
Q 001776 554 STMMAYSADGARLFS-CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVG-VVQFDTTKNRFLAAGD-----EFMIKFWD 626 (1015)
Q Consensus 554 i~~~~~s~~~~~l~~-~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~-~v~~~~~~~~l~~~~~-----dg~i~vwd 626 (1015)
...++++|...+-+. +-.. .....++|........++....+.... .-.|||||.+|+..-. -|.|-|||
T Consensus 70 ~Hgi~~~p~~~ravafARrP---Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRP---GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cCCeecCCCCcceEEEEecC---CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 345778886654433 3322 225788999888776666554432222 2369999999988643 36799999
Q ss_pred CCCC-ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEE-EccCCceeeeeecCCccccccccccceeccccccc
Q 001776 627 MDNV-NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL-ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (1015)
Q Consensus 627 ~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1015)
.+.+ ..+..+..+ .-.-..+.|.+||+.++.+ +|-|..- +....+--+..++
T Consensus 147 ~r~~fqrvgE~~t~--GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNldsMe---------------------- 200 (366)
T COG3490 147 AREGFQRVGEFSTH--GIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDSME---------------------- 200 (366)
T ss_pred cccccceecccccC--CcCcceeEEecCCcEEEEe--CCceecccccCccccchhhcC----------------------
Confidence 8743 233444433 2234678999999999876 4555443 1110000000000
Q ss_pred ccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEE
Q 001776 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (1015)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 784 (1015)
-.+.+.|.. .........++...+...|+.++.
T Consensus 201 --------------------------------------------PSlvlld~a---tG~liekh~Lp~~l~~lSiRHld~ 233 (366)
T COG3490 201 --------------------------------------------PSLVLLDAA---TGNLIEKHTLPASLRQLSIRHLDI 233 (366)
T ss_pred --------------------------------------------ccEEEEecc---ccchhhhccCchhhhhcceeeeee
Confidence 000111100 011122233343346677888999
Q ss_pred cCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc--
Q 001776 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-- 862 (1015)
Q Consensus 785 s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-- 862 (1015)
.+||+..+.+--.|.-. .-....+.......+...+....+... -..-|-+++.+.+..+++..+
T Consensus 234 g~dgtvwfgcQy~G~~~------d~ppLvg~~~~g~~l~~~~~pee~~~~-------~anYigsiA~n~~~glV~lTSP~ 300 (366)
T COG3490 234 GRDGTVWFGCQYRGPRN------DLPPLVGHFRKGEPLEFLDLPEEQTAA-------FANYIGSIAANRRDGLVALTSPR 300 (366)
T ss_pred CCCCcEEEEEEeeCCCc------cCCcceeeccCCCcCcccCCCHHHHHH-------HHhhhhheeecccCCeEEEecCC
Confidence 99988555433222100 000111222222223333433333222 234567888887777877777
Q ss_pred CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEE
Q 001776 863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1015)
Q Consensus 863 dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd 913 (1015)
.+...+||..+|..+..-.- .....++-. ..=+++.+.+|.+..+.
T Consensus 301 GN~~vi~da~tG~vv~~a~l--~daaGva~~---~~gf~vssg~G~~~~~s 346 (366)
T COG3490 301 GNRAVIWDAATGAVVSEAAL--PDAAGVAAA---KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCeEEEEEcCCCcEEecccc--cccccceec---cCceEEecCCceEEecc
Confidence 56799999999988765331 223333333 22344455677777763
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.06 Score=56.79 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=131.4
Q ss_pred cCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEE-----
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI----- 502 (1015)
Q Consensus 428 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~----- 502 (1015)
..++.|+.|+.+| +.++++........ + .+...|..+...++-+ .++.- .|+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvL-sd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVL-SDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEE-cCCccEEEEchhhcccccccccc
Confidence 3678999999999 89999833322221 1 1333499999999887 33333 359999999875433321
Q ss_pred ---------eeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC-----CceeeecCCCCceEEEEECCCCCEEEE
Q 001776 503 ---------FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL-----GSRVDYDAPGHSSTMMAYSADGARLFS 568 (1015)
Q Consensus 503 ---------~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~ 568 (1015)
-......+...+......+...+.......|.+|.+... .....+.. ...+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEE
Confidence 011223344444112223334455555568888887653 12233333 3577888888 566776
Q ss_pred EeeCCCCCceEEEEeCCCCeeeEEeeCCCC-----------CCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeE--E
Q 001776 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGK-----------RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLA--S 635 (1015)
Q Consensus 569 ~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~-----------~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~ 635 (1015)
+..++ ..+.|+.++.....+..... .++..+.. +++.++++. |..-.+.|. .|+... .
T Consensus 154 ~~~~~-----f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTSKG-----FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeCCc-----eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 65432 88899987766544422211 12333333 345566543 223333343 444333 3
Q ss_pred EecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCc
Q 001776 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRT 685 (1015)
Q Consensus 636 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 685 (1015)
+... .....+++. ..+|+..+. +.|.||++.++ ++++.+..+.
T Consensus 225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~-~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETG-ELVQTIPLPN 267 (275)
T ss_pred EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCC-cEEEEEECCC
Confidence 3332 244566663 457776655 56999999999 7777776543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.012 Score=65.22 Aligned_cols=221 Identities=12% Similarity=0.115 Sum_probs=108.2
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
..-.+..+.++|+|+.+++ ..||...|+.....+.. ..+.-...+|++.+ .+|
T Consensus 31 ~~~~p~~ls~npngr~v~V--~g~geY~iyt~~~~r~k------------------------~~G~g~~~vw~~~n-~yA 83 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV--CGDGEYEIYTALAWRNK------------------------AFGSGLSFVWSSRN-RYA 83 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE--EETTEEEEEETTTTEEE------------------------EEEE-SEEEE-TSS-EEE
T ss_pred CCcCCeeEEECCCCCEEEE--EcCCEEEEEEccCCccc------------------------ccCceeEEEEecCc-cEE
Confidence 4456889999999995544 56788888884433221 12445568899844 577
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+-...++|.|+.--.....+.. .+. ..+..+-. |. +|...+. +.|.+||+.+++.++++... +|..+.
T Consensus 84 v~~~~~~I~I~kn~~~~~~k~i-~~~---~~~~~If~---G~--LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~ 151 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKNEVVKSI-KLP---FSVEKIFG---GN--LLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVI 151 (443)
T ss_dssp EE-TTS-EEEEETTEE-TT------S---S-EEEEE----SS--SEEEEET-TEEEEE-TTT--EEEEESS---E-EEEE
T ss_pred EEECCCeEEEEEcCccccceEE-cCC---cccceEEc---Cc--EEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEE
Confidence 7777888999632222221211 111 12333322 76 4555444 48999999999999998743 388888
Q ss_pred ecccCCccEEEEEeCCCeEEEEeCCCC----------CceeeecCC-CCceEEEEECCCCCEEEEEeeCCCCCceEEEEe
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNL----------GSRVDYDAP-GHSSTMMAYSADGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
|+++ |.+++..+.+ .+.+++.+.. +........ ...|.+.+|..+ .++.... . .+..+-
T Consensus 152 Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~----~-~lkYl~ 221 (443)
T PF04053_consen 152 WSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS----N-HLKYLV 221 (443)
T ss_dssp E-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T----T-EEEEEE
T ss_pred EECC--CCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC----C-eEEEEE
Confidence 8654 4677777655 5667665432 001111112 447778888766 3333321 1 354432
Q ss_pred CCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCC
Q 001776 584 ESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628 (1015)
Q Consensus 584 ~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~ 628 (1015)
-.....+..+. .++.-+.+.+..+.++....|+.+..+.+.
T Consensus 222 ~Ge~~~i~~ld----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 222 NGETGIIAHLD----KPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTEEEEEEE-S----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred cCCcceEEEcC----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 11111222221 256666777766777777777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.081 Score=55.80 Aligned_cols=225 Identities=12% Similarity=0.097 Sum_probs=126.8
Q ss_pred EEEEEecCCeEEEEEcC-CcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccC
Q 001776 371 LLVVGTNMGDVMLWEVG-SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~ 449 (1015)
.|+.|+.+| +.+++.. ...... ..+...|..+...|+-+.|++-+ |+.+.++++..
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~---------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTR---------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred EEEEEECCC-EEEEEecCCcccee---------------------EeecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 578889999 9999982 222221 11233499999999888777664 48999999876
Q ss_pred Cceeeeee-----------EEecccCceeEEE--EecCCCceEEEEEeCCCeEEEEEcCCC-----ceEEEeeCCCCCEE
Q 001776 450 GDELRNHL-----------EIEAHVGSVNDLA--FSYPNKQLSVVTCGEDRVIKVWDAVTG-----TKQYIFEGHESPVY 511 (1015)
Q Consensus 450 ~~~~~~~~-----------~~~~h~~~V~~~~--~s~~~~~~~l~s~s~dg~v~vwd~~~~-----~~~~~~~~h~~~v~ 511 (1015)
-....... ........+...+ -...+. ..+.......|.+|.+... +..+++. -...+.
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~--~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~ 142 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS--RRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPS 142 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccc--eEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcE
Confidence 43222100 0011223344444 112333 2333444458888877653 3555665 346788
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC------------CceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG------------HSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
+++|. + +.++.|..+ ...+.|+.++.......... .++..+. -+++.+|++... +
T Consensus 143 ~i~~~--~--~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~~~-------~ 209 (275)
T PF00780_consen 143 SIAFL--G--NKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCYDN-------I 209 (275)
T ss_pred EEEEe--C--CEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEecc-------e
Confidence 88886 2 467766654 46788888655543332111 1222233 334556654321 3
Q ss_pred EEEeCCCCeeeE--EeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecC
Q 001776 580 VEWNESEGAVKR--TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 580 ~iwd~~~~~~~~--~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
-+|=-..|+..+ .+.-.. ....+++. ..++++.+.+ .|.||++.++++++.+...
T Consensus 210 g~fv~~~G~~~r~~~i~W~~--~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 210 GVFVNKNGEPSRKSTIQWSS--APQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEEcCCCCcCcccEEEcCC--chhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 333333454433 222211 33445553 4577777664 5999999999999998754
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.065 Score=57.91 Aligned_cols=220 Identities=15% Similarity=0.107 Sum_probs=118.2
Q ss_pred CeEEEEEccCCceeeeeeEEecccCceeEE---EEecCC--CceEEEEEeC----------CCeEEEEEcCCC----ceE
Q 001776 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDL---AFSYPN--KQLSVVTCGE----------DRVIKVWDAVTG----TKQ 500 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~---~~s~~~--~~~~l~s~s~----------dg~v~vwd~~~~----~~~ 500 (1015)
+.|++.|..+.+.+... .+.... .++++ .+..++ +..+++.|.. .|.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~~-~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSF-ELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEE-EEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEE-ECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 35788888887765432 454333 23333 333221 1226776643 288999999884 222
Q ss_pred EEe--eCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecC--CCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 501 YIF--EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA--PGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 501 ~~~--~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
..+ ....++|++++.. ++ .+++ +.++.|.+|++...+....... ....+.++... +++++++...+ .
T Consensus 80 ~~i~~~~~~g~V~ai~~~---~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~--s 150 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSF---NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMK--S 150 (321)
T ss_dssp EEEEEEEESS-EEEEEEE---TT-EEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSS--S
T ss_pred EEEEEEeecCcceEhhhh---CC-EEEE-eecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEccc--C
Confidence 211 2357889999854 22 3333 3358999999988772222211 22244555444 55787775432 3
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-------C--ceeEEEecCCCCCCcce
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------V--NLLASIDADGGLQASPC 647 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~-------~--~~~~~~~~~~~~~~v~~ 647 (1015)
..+.-|+....+....-.......+.++.+-++++.++++..+|.+.++.... + ++......+- ...|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l-g~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHL-GDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEEC-CCccce
Confidence 33445565333333333333333678888886767999999999999998752 2 2222333332 235666
Q ss_pred E---EEcC--CC------CEEEEEeCCCcEEEEEc
Q 001776 648 I---RFNK--EG------ILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 648 v---~~s~--~~------~~l~~~~~dg~i~iw~~ 671 (1015)
+ .+.| .+ ..++.++.+|.|.+.-.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 6 4444 12 24778889999985533
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0038 Score=71.94 Aligned_cols=151 Identities=9% Similarity=0.045 Sum_probs=89.8
Q ss_pred CCccEEEEccCCCEEEEEc-------CC--eEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC--------
Q 001776 844 DAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED-------- 906 (1015)
Q Consensus 844 ~~v~~l~~s~dg~~la~~s-------dg--~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d-------- 906 (1015)
..+.+.++||||+.+|... |. .|.+++. .+.......+ ...+.-.|+| ||..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999887664 33 4555564 2333222333 2478899999 87777766432
Q ss_pred ----CeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEE---EEccCcccccceEEEecCCCccccCC
Q 001776 907 ----SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCV---WSTDGWEKQASKFLTIPNGRTASALA 979 (1015)
Q Consensus 907 ----g~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~v---Wd~~~~~~~~~~~~~~~~~~~~~~~~ 979 (1015)
+.+.+.+++.++... ...+.|..+.|||||..++... ++.|++ -....|+..-.....+..+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 233333444443322 2346799999999999988766 467777 444455422111122222221 23
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEc
Q 001776 980 DTRVQFHLDQTHLLAVHETQIAIYEA 1005 (1015)
Q Consensus 980 v~~l~fs~dg~~l~~~~d~~i~vwd~ 1005 (1015)
+.++.|..++.+++...++...+|.+
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v 524 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYV 524 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEE
Confidence 57899999999664444444444544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=57.67 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=114.4
Q ss_pred EEEccCCCEEEEEECC----------C-eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEE
Q 001776 424 VMWSPDGTLFGVAYSK----------H-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 424 l~~spdg~~las~~~d----------g-~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vw 492 (1015)
++.+|.|-.+|....+ . .|+||+... +.+... .+.. +.|.++.|+.+.. |+.-..||.++++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i-~w~~--~~iv~~~wt~~e~---LvvV~~dG~v~vy 106 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSI-PWDS--GRIVGMGWTDDEE---LVVVQSDGTVRVY 106 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEE-EECC--CCEEEEEECCCCe---EEEEEcCCEEEEE
Confidence 4556666666655443 2 488898765 344432 2333 8899999998765 6777899999999
Q ss_pred EcCCCceEEEee--CCCCCEEEEe-e--cccCCccEEEEEeCCCeEEEEe-CCCCCceeee-cCCCC--------ceE-E
Q 001776 493 DAVTGTKQYIFE--GHESPVYSIC-P--HHKENIQFIFSTATDGKIKAWL-YDNLGSRVDY-DAPGH--------SST-M 556 (1015)
Q Consensus 493 d~~~~~~~~~~~--~h~~~v~~i~-~--~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~-~~~~~--------~i~-~ 556 (1015)
|+. |+....+. .....|.... + ....+| ++.-..++.+.+.+ .......... ..... ... .
T Consensus 107 ~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i 183 (410)
T PF04841_consen 107 DLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVI 183 (410)
T ss_pred eCC-CceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccc
Confidence 975 44311111 0111222111 1 112243 33333445444332 2211010000 00000 000 0
Q ss_pred EEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEE
Q 001776 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI 636 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 636 (1015)
..++.+....+....+ ..+.+.+....+. +. ..+++..+++||++++++.-..+|.+.+.+.+-.+.+..+
T Consensus 184 ~~l~~~~~~~i~~~~g----~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 184 PLLSSDRVVEILLANG----ETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred eEeecCcceEEEEecC----CEEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 2233333333333221 1243333221111 11 1237899999999999999999999999987766666666
Q ss_pred ecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEE
Q 001776 637 DADGGLQASPCIRFNKEGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 637 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~ 670 (1015)
.... ......+.|.-+...++.- ...+.+..
T Consensus 255 ~~~~-~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 255 DTDS-KSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred ecCc-CCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 5432 3355678887654333322 33444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00012 Score=79.12 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=106.4
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce--eeecCCCCceEEEEECC-CCCEEEEEeeCCCCCceEEEEe
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR--VDYDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEWN 583 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~-~~~~l~~~~~d~~~~~~i~iwd 583 (1015)
...+.|+++....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.|+++-.....+..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34466666655555567888899999988877654332 22333445789999988 5566666644334566799999
Q ss_pred CCCC--eee--EEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-ceeEEEecCCCCCCcceEEEcC-CCCEE
Q 001776 584 ESEG--AVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNV-NLLASIDADGGLQASPCIRFNK-EGILL 657 (1015)
Q Consensus 584 ~~~~--~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 657 (1015)
+.++ .+. ..+.+.......+++|..+.+.+++|.....+.++|++.. .....+. ...+..+..+| .+.++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 9876 221 1222212224567888888888899888889999998732 2222222 23456788888 77788
Q ss_pred EEEeCCCcEEEEEc
Q 001776 658 AVSTNDNGIKILAN 671 (1015)
Q Consensus 658 ~~~~~dg~i~iw~~ 671 (1015)
++-. ||.|.+||.
T Consensus 212 cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDT 224 (783)
T ss_pred eccc-cCceeeccc
Confidence 7665 999999994
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.12 Score=54.43 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=71.3
Q ss_pred CCCccEEEEccCCCEEEEEc--CCeEEEEeCCC--C----ce-eEEeCCCCCCeeEEEEcCCCCcEEEEEEcCC-eEEEE
Q 001776 843 EDAVPCFALSKNDSYVMSAS--GGKISLFNMMT--F----KT-MTTFMPPPPAATFLAFHPQDNNIIAIGMEDS-SIQIY 912 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~--~----~~-~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg-~v~vw 912 (1015)
-..-..++||||++.+..+. .+.|.-|++.. + +. ...+....+..-.++... +|.+.+++-.+| .|.+|
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 34456799999999888886 47788887752 1 11 122223345566777777 777776555554 99999
Q ss_pred EcccceEEEEEcCccCCeEEEEEe-CCCCEEEEEeC
Q 001776 913 NVRVDEVKTKLKGHQKRITGLAFS-NTLNVLVSSGA 947 (1015)
Q Consensus 913 d~~~~~~~~~l~~h~~~v~~l~~s-pdg~~l~s~s~ 947 (1015)
+.+ |+++..+......+++++|- |+.+.|+..+.
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 988 99998888776778889886 55566554443
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=71.79 Aligned_cols=94 Identities=18% Similarity=0.446 Sum_probs=72.2
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEE-EEEEccCCCEEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVN-RVMWSPDGTLFG 434 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la 434 (1015)
...|.-+.|+|.-. ++|++..+|.|.+..+. -+. +|++ .-|...++ +++|.|||+.||
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwti------------p~p~~~v~~sL~W~~DGklla 78 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWTI------------PIPGENVTASLCWRPDGKLLA 78 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEec------------cCCCCccceeeeecCCCCEEE
Confidence 45688899999998 89999999999999887 332 3432 33555566 999999999999
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEe
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFS 472 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s 472 (1015)
+|-.||+|++.|+.+|..+... ...-...|.++-|+
T Consensus 79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 9999999999999998766531 12244567777775
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.14 Score=55.78 Aligned_cols=83 Identities=13% Similarity=0.235 Sum_probs=60.8
Q ss_pred ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCC-----------------EE-E
Q 001776 553 SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN-----------------RF-L 614 (1015)
Q Consensus 553 ~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~-----------------~l-~ 614 (1015)
.+.+++.+|++++.++. |.-++|.++|+.++..++.++|..+..+..+.....+. +| +
T Consensus 309 ~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred eEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 56789999998766664 44668999999999999999998876655544332221 22 3
Q ss_pred EEeCCCcEEEEeCCCCceeEEEecC
Q 001776 615 AAGDEFMIKFWDMDNVNLLASIDAD 639 (1015)
Q Consensus 615 ~~~~dg~i~vwd~~~~~~~~~~~~~ 639 (1015)
-+-.-|.|.||++++|..+..+...
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEEeC
Confidence 3457889999999999888877643
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.066 Score=57.88 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=103.1
Q ss_pred CeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEE---EEEccC----CCEEEEEEC---------C-Ce
Q 001776 379 GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNR---VMWSPD----GTLFGVAYS---------K-HI 441 (1015)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~---l~~spd----g~~las~~~---------d-g~ 441 (1015)
..|++.|..+.+.+....+. ....+++ +.+..+ ..+|++|.. . |.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~------------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr 63 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE------------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR 63 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE------------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred cEEEEEeCCCCeEEEEEECC------------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence 35888888888777654443 2234444 344433 467887754 2 88
Q ss_pred EEEEEccCC----ceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc-eEEEee-CCCCCEEEEee
Q 001776 442 VHLYTYHGG----DELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT-KQYIFE-GHESPVYSICP 515 (1015)
Q Consensus 442 v~iwd~~~~----~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~~-~h~~~v~~i~~ 515 (1015)
|.++++... ..++.... ....++|++++-- ++ .++.+ ..+.|.+|++...+ ....-. .....+.++..
T Consensus 64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~---~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NG---RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TT---EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CC---EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 999999884 23333222 3457889998877 33 33333 34789999998877 443222 22336666654
Q ss_pred cccCCccEEEEEeCCCeEEEEeCCCCCc-eee--ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCC
Q 001776 516 HHKENIQFIFSTATDGKIKAWLYDNLGS-RVD--YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 516 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~-~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
. + ++++.|+....+.++.++.... ... ......+++++.+-++++.++++-. .+.+.++...
T Consensus 138 ~--~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~----~gnl~~l~~~ 202 (321)
T PF03178_consen 138 F--K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK----DGNLFVLRYN 202 (321)
T ss_dssp E--T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET----TSEEEEEEE-
T ss_pred c--c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC----CCeEEEEEEC
Confidence 3 3 4899999888888886654332 221 2223447888888877776665533 3346666543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.52 Score=52.06 Aligned_cols=242 Identities=15% Similarity=0.114 Sum_probs=154.6
Q ss_pred CEEEEEEccCCCEEEEEECCC-eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 420 SVNRVMWSPDGTLFGVAYSKH-IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 420 ~V~~l~~spdg~~las~~~dg-~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
....+...+++..+....... .+.+.+.. ...... ....-...-..++.++++.. ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 566778888886655543322 34444433 111111 11111133457788888886 45666667899999987777
Q ss_pred eEEEeeCCCCCEEEEeecccCCccEEEEEeC---CCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 499 KQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 499 ~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
......--. ....++++++. +.+..+.. ++++.+.|..+............+ ..++++|+|..++.+. ..
T Consensus 108 ~~~~~~vG~-~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD 180 (381)
T ss_pred eeeEeeecc-CCceEEECCCC--CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence 776554322 44557776554 45555444 688888888777666663332234 8899999999888876 23
Q ss_pred CceEEEEeCCCCeeeEEee----CCCCCCeEEEEEeCCCCEEEEEeCC---CcEEEEeCCCCceeEEEecCCCCCCcceE
Q 001776 576 ESYLVEWNESEGAVKRTYH----GLGKRSVGVVQFDTTKNRFLAAGDE---FMIKFWDMDNVNLLASIDADGGLQASPCI 648 (1015)
Q Consensus 576 ~~~i~iwd~~~~~~~~~~~----~~~~~~i~~v~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~v~~v 648 (1015)
++.+.+.|.......+ -. ......-..+.++|+|..+++.... +.+...|..++........-+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 5679999977665553 11 0111134568899999977776533 58999999988777662222222 44678
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEccCC
Q 001776 649 RFNKEGILLAVST-NDNGIKILANADG 674 (1015)
Q Consensus 649 ~~s~~~~~l~~~~-~dg~i~iw~~~~~ 674 (1015)
..+|+|..+.+.. ..+.+.+.|..+.
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 9999999988775 4478888888776
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.013 Score=68.36 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=98.7
Q ss_pred CCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCC-EEEEeeccc---CCccEEEEEeCCCeEEEEeCCCCCceee----
Q 001776 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP-VYSICPHHK---ENIQFIFSTATDGKIKAWLYDNLGSRVD---- 546 (1015)
Q Consensus 475 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~-v~~i~~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~---- 546 (1015)
.+.++|........++-.|++.|+.+..+..|... |..++-... -+....+.|-.++.+..||.+..+....
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33334445556788999999999999999887754 766653211 0123467778889999999997543221
Q ss_pred -ecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEE
Q 001776 547 -YDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFW 625 (1015)
Q Consensus 547 -~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vw 625 (1015)
.........|++-+.+| +|++|+.+|+ |++||--..+....+.+... +|..|..+.||+++++.+. ..+.++
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~----IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc~-tyLlLi 644 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGD----IRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATCK-TYLLLI 644 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCc----EEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEeec-ceEEEE
Confidence 11223467888888777 5677766554 99999543333344555454 9999999999999998875 456666
Q ss_pred eC
Q 001776 626 DM 627 (1015)
Q Consensus 626 d~ 627 (1015)
+.
T Consensus 645 ~t 646 (794)
T PF08553_consen 645 DT 646 (794)
T ss_pred EE
Confidence 64
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.035 Score=65.02 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=54.6
Q ss_pred CccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCC
Q 001776 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1015)
Q Consensus 776 ~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg 855 (1015)
....+|++-+.+|. ||+|+.+|.|++||-. |..-...+++ -..+|..+.++.||
T Consensus 577 ~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~-----------------------g~~AKT~lp~--lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 577 KNNFSCFATTEDGY-IAVGSNKGDIRLYDRL-----------------------GKRAKTALPG--LGDPIIGIDVTADG 630 (794)
T ss_pred CCCceEEEecCCce-EEEEeCCCcEEeeccc-----------------------chhhhhcCCC--CCCCeeEEEecCCC
Confidence 34567888888885 9999999999999621 1111223554 67899999999999
Q ss_pred CEEEEEcCCeEEEEeC
Q 001776 856 SYVMSASGGKISLFNM 871 (1015)
Q Consensus 856 ~~la~~sdg~i~iwd~ 871 (1015)
++|++.++..+.+++.
T Consensus 631 kwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 631 KWILATCKTYLLLIDT 646 (794)
T ss_pred cEEEEeecceEEEEEE
Confidence 9999999999999886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0014 Score=44.29 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=34.9
Q ss_pred ceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001776 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 917 ~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd 955 (1015)
++++..+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0045 Score=64.09 Aligned_cols=111 Identities=10% Similarity=0.152 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHHhcCCCcc----------HHHHHHHhhcccHHHHHHHhcCC-ccccCCcchhHHHH
Q 001776 6 RELVFLILQFLDEEKFKETVHKLEQDSGFFFN----------MRYFEDMVTNGEWDEVEKYLSGF-TKVDDNRYSMKIFF 74 (1015)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1015)
+.+-.+|..++..+|....+..|-+|+|...+ +.++-++|.+||-.-|++.+..- ..+... ...+-|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~ 194 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEF 194 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHH
Confidence 34578899999999999999999999998752 78899999999999999988764 122221 223889
Q ss_pred HHHHHHHHHHHhccCHH--HHHHHHHHhcccccccCHHHHHHHHHh
Q 001776 75 EIRKQKYLEALDKRDRA--KAVEILVKDLKVFSAFNEDLFKEITQL 118 (1015)
Q Consensus 75 ~i~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1015)
.+..+.|++++..|... +|+...|+.++|+........+.|-.+
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~s 240 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGS 240 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHH
Confidence 99999999999999877 999999999999876444444444433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.96 Score=54.11 Aligned_cols=244 Identities=9% Similarity=0.030 Sum_probs=122.4
Q ss_pred CCEEEEEEccCCCEEEEEECC-----CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC-----Ce
Q 001776 419 ASVNRVMWSPDGTLFGVAYSK-----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RV 488 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~d-----g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d-----g~ 488 (1015)
-.+..+.|||||++|+.+... ..|++.|+.+|..+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 456778999999999887442 3588889988763321 1221 1 145999999985 33333222 47
Q ss_pred EEEEEcCCC--ceEEEeeCCCCCEEEEeecccCCccEEEEEeC---CCeEEEEeCCC--CCceeeecCCCCceEEEEECC
Q 001776 489 IKVWDAVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTAT---DGKIKAWLYDN--LGSRVDYDAPGHSSTMMAYSA 561 (1015)
Q Consensus 489 v~vwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~s~ 561 (1015)
|+.|++.++ +....+........ +......++++++..+. ++.+.+++.+. ................+. +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 888888887 33344443333333 22222334455544333 35688888533 222222222222222222 22
Q ss_pred CCCEEEEEeeCCCCCceEEEEeCCC-CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEE--EeCCCCceeEEEec
Q 001776 562 DGARLFSCGTNKEGESYLVEWNESE-GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF--WDMDNVNLLASIDA 638 (1015)
Q Consensus 562 ~~~~l~~~~~d~~~~~~i~iwd~~~-~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~v--wd~~~~~~~~~~~~ 638 (1015)
+..++..+..+.....|...++.. ++....+....+..+..+.+.. +..+++...+|.-++ ++..++ .+..+..
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~ 355 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR-EVIGIAF 355 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC-ceEEecC
Confidence 344444443333344555556552 3322233332333677777762 344555556666444 454333 3344332
Q ss_pred CCCCCCcceEEEc--CCCC-EEEEEe---CCCcEEEEEccCC
Q 001776 639 DGGLQASPCIRFN--KEGI-LLAVST---NDNGIKILANADG 674 (1015)
Q Consensus 639 ~~~~~~v~~v~~s--~~~~-~l~~~~---~dg~i~iw~~~~~ 674 (1015)
.. ...+..+.++ +++. ++++.+ .-+.+..+|..++
T Consensus 356 ~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 356 DD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 11 1122223344 3333 444333 3467888888765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.018 Score=61.70 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred CCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEE-----EEEeCCCeEEEEeCCCCCc-eee-e
Q 001776 475 NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFI-----FSTATDGKIKAWLYDNLGS-RVD-Y 547 (1015)
Q Consensus 475 ~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l-----~s~~~dg~i~vwd~~~~~~-~~~-~ 547 (1015)
...+++.++.....++-.|++.|+.+.++.-+.. |+-+.+.++..+..+ +.|-.|+.|.-||++-... ... .
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344667777788899999999999999987766 666666666554333 4466788899999985444 111 1
Q ss_pred cC----CCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEE
Q 001776 548 DA----PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIK 623 (1015)
Q Consensus 548 ~~----~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~ 623 (1015)
.. ......|.+-..+| ++++++.+|+ |++||--.......+.+... +|..|..+.+|.+|++.+. ..+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd----IRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc~-tyLl 495 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD----IRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATCK-TYLL 495 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCc----EEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEecc-cEEE
Confidence 11 12355666666666 6777777654 99999733344445555555 8999999999999988774 4555
Q ss_pred EEeC
Q 001776 624 FWDM 627 (1015)
Q Consensus 624 vwd~ 627 (1015)
+.++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 5554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.28 Score=52.54 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=72.9
Q ss_pred cEEEEEe-CCCeEEEEeCCCCCce----eeecC---C--C--CceEEEEECCCCCEEEEEee--CCCCCceEEEEeCCCC
Q 001776 522 QFIFSTA-TDGKIKAWLYDNLGSR----VDYDA---P--G--HSSTMMAYSADGARLFSCGT--NKEGESYLVEWNESEG 587 (1015)
Q Consensus 522 ~~l~s~~-~dg~i~vwd~~~~~~~----~~~~~---~--~--~~i~~~~~s~~~~~l~~~~~--d~~~~~~i~iwd~~~~ 587 (1015)
++|+..+ ..++|++.|+.+.... ..+.. . . ..-..+-.-|+|+.++++-. ++++.+-+.++|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5666655 6788999998743221 11111 0 0 12233445689988887643 3455667889998888
Q ss_pred eeeEEeeCCCC--CCeEEEEEeCCCCEEEEEe--------------------CCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 588 AVKRTYHGLGK--RSVGVVQFDTTKNRFLAAG--------------------DEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 588 ~~~~~~~~~~~--~~i~~v~~~~~~~~l~~~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
+.......... ..-..+.+.|..+.+++.. ...++.+||+.+.+.++++.........
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 88777765432 2345678889888888863 1457999999999999999875322234
Q ss_pred ceEEEcCC--CCEEEEEe-CCCcEEEEE
Q 001776 646 PCIRFNKE--GILLAVST-NDNGIKILA 670 (1015)
Q Consensus 646 ~~v~~s~~--~~~l~~~~-~dg~i~iw~ 670 (1015)
..+.|..+ ..+=++++ -..+|..|-
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~ 275 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFY 275 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEE
Confidence 56777653 33333332 334444443
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.065 Score=45.56 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=67.6
Q ss_pred EEEEEEcc-CC---CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCC
Q 001776 421 VNRVMWSP-DG---TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 421 V~~l~~sp-dg---~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~ 496 (1015)
|+++++.. |+ +.|++|+.|..|+||+-+. .+. ++. ....|+++.-...+ .++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~---~F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGG---RFAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCC---EEEEEecCCEEEEEeC--
Confidence 66777765 33 5899999999999998543 233 333 44567788777665 4899999999999973
Q ss_pred CceEEEeeCCCCCEEEEe-ecccCCc-cEEEEEeCCCeEE
Q 001776 497 GTKQYIFEGHESPVYSIC-PHHKENI-QFIFSTATDGKIK 534 (1015)
Q Consensus 497 ~~~~~~~~~h~~~v~~i~-~~~~~~~-~~l~s~~~dg~i~ 534 (1015)
...+...+.-.. +.+++ +..+.+| .-|++|-.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444555553333 55554 4333333 3578888888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.05 Score=62.93 Aligned_cols=182 Identities=13% Similarity=0.167 Sum_probs=100.7
Q ss_pred ccEEEEEEcCCCcEEEEecc------CcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEE
Q 001776 777 MRVSRLIYTNSGLAILALAS------NAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFA 850 (1015)
Q Consensus 777 ~~i~~l~~s~dg~~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~ 850 (1015)
..+.+.++||||+.++.... |+.-.+|-. +. .+.. ..... ....+...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~--------------------~~-gg~~-~~lt~----g~~~t~Ps 403 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVG--------------------PL-GGVA-VQVLE----GHSLTRPS 403 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEE--------------------eC-CCcc-eeeec----CCCCCCce
Confidence 45778999999998887762 333444422 11 1111 11111 22377889
Q ss_pred EccCCCEEEEEcCC-------------eEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEE---EEc
Q 001776 851 LSKNDSYVMSASGG-------------KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI---YNV 914 (1015)
Q Consensus 851 ~s~dg~~la~~sdg-------------~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~v---wd~ 914 (1015)
|+|||+.|++..|+ .+.+.+++.++... .....|..+.||| ||..+|... ++.|++ -..
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~ 478 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQT 478 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeC
Confidence 99999988877643 22223343333322 2345799999999 888887765 578887 443
Q ss_pred ccceE-E---EEEc-CccCCeEEEEEeCCCCEEEEEeCCCcEEEEEc--cCcccccceEEEecCCCccccCCceEEEEcc
Q 001776 915 RVDEV-K---TKLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWST--DGWEKQASKFLTIPNGRTASALADTRVQFHL 987 (1015)
Q Consensus 915 ~~~~~-~---~~l~-~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1015)
..|+. + ..+. +-...+.++.|.+++.++ .+..++...+|.+ +..... ....+.. ...+.+++=++
T Consensus 479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~-----~~~~~n~--~~~v~~vaa~~ 550 (591)
T PRK13616 479 EDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD-----ALPSRNL--SAPVVAVAASP 550 (591)
T ss_pred CCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccc-----ccCCCCc--cCceEEEecCC
Confidence 44541 1 1122 233346889999999865 4454444445554 432211 1122211 14577777776
Q ss_pred CCCEEEEEeCC
Q 001776 988 DQTHLLAVHET 998 (1015)
Q Consensus 988 dg~~l~~~~d~ 998 (1015)
+ ..+++..++
T Consensus 551 ~-~iyv~~~~g 560 (591)
T PRK13616 551 S-TVYVTDARA 560 (591)
T ss_pred c-eEEEEcCCc
Confidence 3 333333455
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0038 Score=68.17 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=78.9
Q ss_pred CCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCee-EEEEcCCCCcEEEEEEcCCeEEEEEcccceEE
Q 001776 843 EDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAAT-FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~-~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~ 920 (1015)
...+..+.|+|.-.++|.+. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++.|++++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 45677899999999999998 8999999987 788888887887777 999999 8999999999999999999998877
Q ss_pred EEE-cCccCCeEEEEEeC
Q 001776 921 TKL-KGHQKRITGLAFSN 937 (1015)
Q Consensus 921 ~~l-~~h~~~v~~l~~sp 937 (1015)
... ..-...|.++.|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 662 22456688888863
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.45 Score=50.08 Aligned_cols=224 Identities=14% Similarity=0.097 Sum_probs=130.7
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCC
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg 440 (1015)
+-.|.|++..++.+--..+.|.-|+..+++.... .+.+.+.++..-.++..|+++. .|
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~---------------------~~p~~~~~~~~~d~~g~Lv~~~-~g 86 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVF---------------------PSPGGFSSGALIDAGGRLIACE-HG 86 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE---------------------ECCCCcccceeecCCCeEEEEc-cc
Confidence 4467777776777777788899999887654321 1334445555555555555543 33
Q ss_pred eEEEEEccCCceeeeeeEEe-c-ccCceeEEEEecCCCceEEEEEeCC----------CeEEEEEcC-CCceEEEeeCCC
Q 001776 441 IVHLYTYHGGDELRNHLEIE-A-HVGSVNDLAFSYPNKQLSVVTCGED----------RVIKVWDAV-TGTKQYIFEGHE 507 (1015)
Q Consensus 441 ~v~iwd~~~~~~~~~~~~~~-~-h~~~V~~~~~s~~~~~~~l~s~s~d----------g~v~vwd~~-~~~~~~~~~~h~ 507 (1015)
+.+++.+++.......... + .....+.+...|+|. +..+... ..-.+|-+. .+..+..+..+-
T Consensus 87 -~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~ 162 (307)
T COG3386 87 -VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL 162 (307)
T ss_pred -cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE
Confidence 6777776665422221111 1 124567888899998 3333333 111344444 566666666655
Q ss_pred CCEEEEeecccCCccEEEEEe-CCCeEEEEeCCC-C----Cc--eeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceE
Q 001776 508 SPVYSICPHHKENIQFIFSTA-TDGKIKAWLYDN-L----GS--RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~----~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
..-+.++|+|++ +.++.+. ..+.|.-|+++. . .. ........+..-.++...+|.+.+++..+ ...|
T Consensus 163 ~~~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v 237 (307)
T COG3386 163 TIPNGLAFSPDG--KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRV 237 (307)
T ss_pred EecCceEECCCC--CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceE
Confidence 566789997766 4555554 457888887762 1 11 11121222344466777788776544332 1259
Q ss_pred EEEeCCCCeeeEEeeCCCCCCeEEEEEe-CCCCEEEEEe
Q 001776 580 VEWNESEGAVKRTYHGLGKRSVGVVQFD-TTKNRFLAAG 617 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~v~~~-~~~~~l~~~~ 617 (1015)
..|+.. |+.+..+..... .+++++|. |+.+.|++.+
T Consensus 238 ~~~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 999988 888888887754 56667765 4445555544
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.053 Score=58.29 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=97.6
Q ss_pred cCCCEEE-EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceE-----EEEEeCCCeEEEEEcCC-Cc-e
Q 001776 428 PDGTLFG-VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS-----VVTCGEDRVIKVWDAVT-GT-K 499 (1015)
Q Consensus 428 pdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~-----l~s~s~dg~v~vwd~~~-~~-~ 499 (1015)
.+.++|+ ++.....++-.|++.|+.+. +..-|.. |+-+.+.|+.+.-. -+.|-.|+.|+-||.+- +. .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 3555544 44455668888999998776 5555555 77788888765211 24566788999999873 22 2
Q ss_pred EEEeeCCC----CCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCC
Q 001776 500 QYIFEGHE----SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575 (1015)
Q Consensus 500 ~~~~~~h~----~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~ 575 (1015)
+..-++|+ ....|.+- .++| +|++|+.+|.|++||--......-+.+-+.+|..+..+.+|++|++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----- 490 (644)
T ss_pred eeeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----
Confidence 22223332 23344443 4443 899999999999998744444556777788999999999999999876
Q ss_pred CceEEEEeC
Q 001776 576 ESYLVEWNE 584 (1015)
Q Consensus 576 ~~~i~iwd~ 584 (1015)
+.++.+.+.
T Consensus 491 ~tyLlLi~t 499 (644)
T KOG2395|consen 491 KTYLLLIDT 499 (644)
T ss_pred ccEEEEEEE
Confidence 335766664
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.43 Score=52.12 Aligned_cols=83 Identities=7% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCCCccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeE-EEEcCCC----------------Cc-EEEE
Q 001776 842 PEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATF-LAFHPQD----------------NN-IIAI 902 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~-l~~sp~d----------------~~-~la~ 902 (1015)
....+.+++.+|++++.|+.+ -|.|.++|+.++..++..+|-.+.-.. +...... .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 456688999999999888876 499999999999888887765543111 1111101 11 3345
Q ss_pred EEcCCeEEEEEcccceEEEEEc
Q 001776 903 GMEDSSIQIYNVRVDEVKTKLK 924 (1015)
Q Consensus 903 g~~dg~v~vwd~~~~~~~~~l~ 924 (1015)
+-.-|.|.||.+..|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5678899999999888777665
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.71 E-value=2.2 Score=51.12 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=116.1
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCCC--------EEEEeeccc--------------CCccEEEEEeCCCeEEEE
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESP--------VYSICPHHK--------------ENIQFIFSTATDGKIKAW 536 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~--------v~~i~~~~~--------------~~~~~l~s~~~dg~i~vw 536 (1015)
.++.++.++.|.-.|.++|+.+.++...... ...+.+... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4677777888888888888888776532210 112222211 123478888899999999
Q ss_pred eCCCCCceeeecCCCC------------ceEEEEECC--CCCEEEEEeeCCC------CCceEEEEeCCCCeeeEEeeCC
Q 001776 537 LYDNLGSRVDYDAPGH------------SSTMMAYSA--DGARLFSCGTNKE------GESYLVEWNESEGAVKRTYHGL 596 (1015)
Q Consensus 537 d~~~~~~~~~~~~~~~------------~i~~~~~s~--~~~~l~~~~~d~~------~~~~i~iwd~~~~~~~~~~~~~ 596 (1015)
|.++++....+...+. ....+.-.| .+..+++++...+ ..+.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432111 000111122 1345555543222 2567999999999988776531
Q ss_pred C----------------CCC-eEEEEEeCCCCEEEEEe------------------CCCcEEEEeCCCCceeEEEecCCC
Q 001776 597 G----------------KRS-VGVVQFDTTKNRFLAAG------------------DEFMIKFWDMDNVNLLASIDADGG 641 (1015)
Q Consensus 597 ~----------------~~~-i~~v~~~~~~~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~~~~ 641 (1015)
. ... -...++.++...++.+. ..+.|.-.|.++|+..-.++...|
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 0 000 12345555555554422 134566778888887776654221
Q ss_pred C-------CCcceEEEcC-CCC---EEEEEeCCCcEEEEEccCCceee
Q 001776 642 L-------QASPCIRFNK-EGI---LLAVSTNDNGIKILANADGIRLL 678 (1015)
Q Consensus 642 ~-------~~v~~v~~s~-~~~---~l~~~~~dg~i~iw~~~~~~~~~ 678 (1015)
. ....-+.+.. +|+ .++.++.+|.++++|..+|+.+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 1 1111222333 553 78899999999999999995443
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.12 Score=44.05 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=66.1
Q ss_pred eeEEEe---ccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 359 VKSMDF---HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 359 V~~~~~---sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
|+++++ ..||..-|++|+.|..|+||+-+. .+.. ..-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 444444 456767899999999999999553 2322 124467888887766 66899
Q ss_pred EECCCeEEEEEccCCceeeeeeEEecccCceeEEEEec---CCCceEEEEEeCCCeEE
Q 001776 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSY---PNKQLSVVTCGEDRVIK 490 (1015)
Q Consensus 436 ~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~---~~~~~~l~s~s~dg~v~ 490 (1015)
+-.+|+|-+|+-.. .+. ..+.. ..++++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~--RlW---RiKSK-~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQ--RLW---RIKSK-NQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcc--eee---eeccC-CCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 99999999997533 122 23322 2355555543 3332 588888888764
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.12 Score=53.19 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=90.6
Q ss_pred CCccEEEEccCCCEEEEEc--CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEE-cccceEE
Q 001776 844 DAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDEVK 920 (1015)
Q Consensus 844 ~~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd-~~~~~~~ 920 (1015)
..+.+.++|+||+.+|... ++.-.||-...+.....+. ....+....|++ ++...+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888766 5544444443333333332 233788889999 777777776666667663 3333221
Q ss_pred -EEEcC--ccCCeEEEEEeCCCCEEEEEe---CCCcEEEEEccCcccc-c---ceEEEecCCCccccCCceEEEEccCCC
Q 001776 921 -TKLKG--HQKRITGLAFSNTLNVLVSSG---ADSQLCVWSTDGWEKQ-A---SKFLTIPNGRTASALADTRVQFHLDQT 990 (1015)
Q Consensus 921 -~~l~~--h~~~v~~l~~spdg~~l~s~s---~dg~v~vWd~~~~~~~-~---~~~~~~~~~~~~~~~~v~~l~fs~dg~ 990 (1015)
..+.. -.+.|+.+.+||||..+|... .++.|.+=-+.....- . .......... ...+..+.|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence 12221 122899999999999887665 3566777655432211 1 1112222111 15689999999999
Q ss_pred EEEEE
Q 001776 991 HLLAV 995 (1015)
Q Consensus 991 ~l~~~ 995 (1015)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88885
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.2 Score=58.12 Aligned_cols=233 Identities=12% Similarity=0.013 Sum_probs=122.9
Q ss_pred CCCEEEEEECC------CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC------CeEEEEEcCC
Q 001776 429 DGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED------RVIKVWDAVT 496 (1015)
Q Consensus 429 dg~~las~~~d------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d------g~v~vwd~~~ 496 (1015)
.+..++.||.+ ..+..||..++.-.. ...+. +...-.+++.. ++. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCCC
Confidence 45566666665 357888888764221 11222 22234445554 344 78888888 3677888777
Q ss_pred CceEE--EeeCCCCCEEEEeecccCCccEEEEEeCCCe-----EEEEeCCCCCceeeecCCCCceEEE-EECCCCCEEEE
Q 001776 497 GTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDGK-----IKAWLYDNLGSRVDYDAPGHSSTMM-AYSADGARLFS 568 (1015)
Q Consensus 497 ~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~ 568 (1015)
++-.. .+........ ++. -+|.+.++|+.||. +-.||..+.+-...-.... ..... ...-+|+..++
T Consensus 359 ~~W~~~a~M~~~R~~~~-v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFG-VAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYII 433 (571)
T ss_pred CceeccCCccCccccce-eEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEE
Confidence 66433 1111111111 111 13367888888865 6677766543322211111 11222 22336777777
Q ss_pred EeeCCCCC--ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCceeEEEecCCC
Q 001776 569 CGTNKEGE--SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-----IKFWDMDNVNLLASIDADGG 641 (1015)
Q Consensus 569 ~~~d~~~~--~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~~~ 641 (1015)
||.++..+ ..+..||..+.+....-.-.....-..++ .-++...+.||.|+. |..||..+.+....-.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 77665432 56889999887654433222221122222 235667777776653 77888887765544222111
Q ss_pred CCCcceEEEcCCCCEEEEEeCCC-----cEEEEEccCC
Q 001776 642 LQASPCIRFNKEGILLAVSTNDN-----GIKILANADG 674 (1015)
Q Consensus 642 ~~~v~~v~~s~~~~~l~~~~~dg-----~i~iw~~~~~ 674 (1015)
...+..+. -++...++|+.|| +|..||..++
T Consensus 513 rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 22222222 2567777888776 4566666554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=2.7 Score=50.36 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=121.2
Q ss_pred CeeEEEeccCCCeEEEEEecCC----eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
.+..+.|||||++++++-+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 4567889999996666655554 488888887753321 0111 11569999999877
Q ss_pred EEEECC------CeEEEEEccCCceeeeeeEEecccCcee-EEEEecCCCceEEEEEe-CCCeEEEEEcC--CCceEEEe
Q 001776 434 GVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVN-DLAFSYPNKQLSVVTCG-EDRVIKVWDAV--TGTKQYIF 503 (1015)
Q Consensus 434 as~~~d------g~v~iwd~~~~~~~~~~~~~~~h~~~V~-~~~~s~~~~~~~l~s~s-~dg~v~vwd~~--~~~~~~~~ 503 (1015)
+....+ ..|..+++.++..-.. ..+........ .+..+.+++.+++.+.+ .++.+.+++.. ++.....+
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 265 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL 265 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence 766542 3577788887721111 12333333333 33334477753222222 34578888843 34422222
Q ss_pred eCCCCCEEEEeecccCCccEEEEEeCC---CeEEEEeCCCCCc-eeeecC-CCCceEEEEECCCCCEEEEEeeCCCCCce
Q 001776 504 EGHESPVYSICPHHKENIQFIFSTATD---GKIKAWLYDNLGS-RVDYDA-PGHSSTMMAYSADGARLFSCGTNKEGESY 578 (1015)
Q Consensus 504 ~~h~~~v~~i~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~~~~~d~~~~~~ 578 (1015)
.........+. +. .+ .+.+....+ ..|...++..... ...+.. ....+..+.+. ++.|+..... ++...
T Consensus 266 ~~~~~~~~~~~-~~-~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~ 339 (686)
T PRK10115 266 PRRKDHEYSLD-HY-QH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS 339 (686)
T ss_pred ECCCCCEEEEE-eC-CC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence 22222222222 22 22 333333222 2343444442122 222222 12367777776 4455554432 33556
Q ss_pred EEEEeCCCCeeeEEee-CCCCCCeEEEEEe--CCCC-EEEEEe---CCCcEEEEeCCCCc
Q 001776 579 LVEWNESEGAVKRTYH-GLGKRSVGVVQFD--TTKN-RFLAAG---DEFMIKFWDMDNVN 631 (1015)
Q Consensus 579 i~iwd~~~~~~~~~~~-~~~~~~i~~v~~~--~~~~-~l~~~~---~dg~i~vwd~~~~~ 631 (1015)
+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 340 l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 340 LRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 7888865443 33333 2111 22333344 3433 444433 45678999988765
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0058 Score=41.02 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=33.7
Q ss_pred CceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEE
Q 001776 874 FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN 913 (1015)
Q Consensus 874 ~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd 913 (1015)
++....+..|...|.++.|++ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345666777888999999999 789999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.50 E-value=2.7 Score=49.54 Aligned_cols=430 Identities=12% Similarity=0.060 Sum_probs=203.0
Q ss_pred ceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEee--CCCCCEEEEeecccCCcc----EEEEEeCCCeEEEEeC
Q 001776 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE--GHESPVYSICPHHKENIQ----FIFSTATDGKIKAWLY 538 (1015)
Q Consensus 465 ~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~----~l~s~~~dg~i~vwd~ 538 (1015)
.++..+.+.+.. .++.++.++.+...++..+. ++... .....|.|+.++|.++++ +++.|..+..+.+--.
T Consensus 489 ~~ti~~~~~n~s--qVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~ 565 (1096)
T KOG1897|consen 489 KITIGVVSANAS--QVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTF 565 (1096)
T ss_pred ceEEEEEeecce--EEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEE
Confidence 344445555555 46777777777777776655 32222 234668888887765443 6777777666554433
Q ss_pred CCCCceeeec-CC----CCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCC-CCCeEEEEEeCCCCE
Q 001776 539 DNLGSRVDYD-AP----GHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNR 612 (1015)
Q Consensus 539 ~~~~~~~~~~-~~----~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~ 612 (1015)
.......... .. ...|.-..+-.|..+|+++..|| .-.-.++|..+|.....-+.+- ..++.--.|+..++.
T Consensus 566 ~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG--~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t 643 (1096)
T KOG1897|consen 566 LPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDG--ALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRT 643 (1096)
T ss_pred CCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCc--eEEEEEEEcccceEccccccccCCCCcEEEEEeeCCce
Confidence 3222222211 11 11344455666677888876544 4344566777765432221111 114444456555544
Q ss_pred EEEEeCCCcEEEEeCCCCceeEE-EecCCCCCCc-ceEEEcCC--CCEEEEEeCCCcEEEEEccCCcee-eeeecCCccc
Q 001776 613 FLAAGDEFMIKFWDMDNVNLLAS-IDADGGLQAS-PCIRFNKE--GILLAVSTNDNGIKILANADGIRL-LRTVESRTFD 687 (1015)
Q Consensus 613 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v-~~v~~s~~--~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~~ 687 (1015)
-+.+..|.-..+|..+ ++++.+ +... .+ ..+.|+.+ ...++++ ..+.+++.-++.-+++ .+++.-+..
T Consensus 644 ~vfa~sdrP~viY~~n-~kLv~spls~k----ev~~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtvpl~~~- 716 (1096)
T KOG1897|consen 644 AVFALSDRPTVIYSSN-GKLVYSPLSLK----EVNHMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTVPLGES- 716 (1096)
T ss_pred EEEEeCCCCEEEEecC-CcEEEeccchH----HhhhhcccccccCCceEEEe-cCCceEEEEecchhhcceeeecCCCC-
Confidence 4444445555555533 333322 2111 11 11223322 2345444 3456666655432111 111111100
Q ss_pred cccccccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccc---cceeeeeeccccCCcc
Q 001776 688 ASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAV---EKSRIWKLTEITEPSQ 764 (1015)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~v~iw~~~~~~~~~~ 764 (1015)
...+...+.-..++ +. +... .....+ .... ..++++|-.+ -..
T Consensus 717 -----prrI~~q~~sl~~~-------------------v~--s~r~--e~~~~~---~~ee~~~s~l~vlD~nT---f~v 762 (1096)
T KOG1897|consen 717 -----PRRICYQESSLTFG-------------------VL--SNRI--ESSAEY---YGEEYEVSFLRVLDQNT---FEV 762 (1096)
T ss_pred -----hhheEecccceEEE-------------------EE--eccc--ccchhh---cCCcceEEEEEEecCCc---eeE
Confidence 00000000000000 00 0000 000000 1111 2344444322 111
Q ss_pred eeEeccCCCcCCccEEEEEEcCC-CcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCC
Q 001776 765 CRSLRLPDNLTAMRVSRLIYTNS-GLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPE 843 (1015)
Q Consensus 765 ~~~~~~~~~~~~~~i~~l~~s~d-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~ 843 (1015)
.....+........+.+..|..| +.++++|+. .+| |+......+-+.++....+..+.. .....-.
T Consensus 763 l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~----~v~--------Pde~ep~~GRIivfe~~e~~~L~~-v~e~~v~ 829 (1096)
T KOG1897|consen 763 LSSHEFERNETALSIISCKFTDDPNTYYVVGTG----LVY--------PDENEPVNGRIIVFEFEELNSLEL-VAETVVK 829 (1096)
T ss_pred EeeccccccceeeeeeeeeecCCCceEEEEEEE----eec--------cCCCCcccceEEEEEEecCCceee-eeeeeec
Confidence 12222222223344555568887 777777653 233 111112222233333332111110 0000022
Q ss_pred CCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcc--cceEEE
Q 001776 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVR--VDEVKT 921 (1015)
Q Consensus 844 ~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~--~~~~~~ 921 (1015)
+.+.++.. -+|+++ +|-...|++|++.+.+.++.-..+..++..+...- .|..+++|+--+++.+--.. .|....
T Consensus 830 Gav~aL~~-fngkll-A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~e 906 (1096)
T KOG1897|consen 830 GAVYALVE-FNGKLL-AGINQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEE 906 (1096)
T ss_pred cceeehhh-hCCeEE-EecCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEE
Confidence 33333332 245554 44578899999998877777777888899999888 88899999988877665544 343443
Q ss_pred EEc-CccCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001776 922 KLK-GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 922 ~l~-~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~ 957 (1015)
..+ .+....+++.+-.+. ..+.+..+|.+.+-..+
T Consensus 907 vArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKD 942 (1096)
T ss_pred eehhhCccceeeEEEecCc-eEEeecccccEEEEEec
Confidence 332 366778888887554 44556677777766544
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=56.66 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=74.8
Q ss_pred CCEEEEEc-CCeEEEEeCCC-CceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCcc-CCeE
Q 001776 855 DSYVMSAS-GGKISLFNMMT-FKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-KRIT 931 (1015)
Q Consensus 855 g~~la~~s-dg~i~iwd~~~-~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~-~~v~ 931 (1015)
+.-+++|. +|.|.+|+..- +.....+..-...|-++.-.-+++.+..+++.||.|+.|++.-.+.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 44566666 99999998762 122222222223333333232256689999999999999999999888888888 6777
Q ss_pred EEEEeCCCCEEEEE--eCCCcEEEEEccCc
Q 001776 932 GLAFSNTLNVLVSS--GADSQLCVWSTDGW 959 (1015)
Q Consensus 932 ~l~~spdg~~l~s~--s~dg~v~vWd~~~~ 959 (1015)
.+..+..++.++++ |.|..++.|++..-
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhhh
Confidence 77788888888888 88889999998763
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.2 Score=45.08 Aligned_cols=201 Identities=15% Similarity=0.172 Sum_probs=124.7
Q ss_pred cCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCc-cccccCCCCCCCCCccEEEEc
Q 001776 774 LTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGI-LMTNDISDTNPEDAVPCFALS 852 (1015)
Q Consensus 774 ~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~~~v~~l~~s 852 (1015)
+-...+.++.|+|+.+.|++........||= ...|. +...++.+ -.....+.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 4455699999999999999998877666652 22333 23334443 3445667888
Q ss_pred cCCCEEEEEc-CCeEEEEeCCCCceeEE-------eC---CCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce---
Q 001776 853 KNDSYVMSAS-GGKISLFNMMTFKTMTT-------FM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--- 918 (1015)
Q Consensus 853 ~dg~~la~~s-dg~i~iwd~~~~~~~~~-------l~---~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~--- 918 (1015)
.+|+++++-- +..+.++.+.....+.. +. ..+...-.+||+| ..+.|..+-+-.-+.||.++.+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888888776 78888887765432222 11 1244577899999 66677777777767777665332
Q ss_pred EEEEEcCcc-------CCeEEEEEeC-CCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCcccc---CCceEEEEcc
Q 001776 919 VKTKLKGHQ-------KRITGLAFSN-TLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASA---LADTRVQFHL 987 (1015)
Q Consensus 919 ~~~~l~~h~-------~~v~~l~~sp-dg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~fs~ 987 (1015)
.+.....++ ..|.++.|.+ .+.+|+-+.+++.+.-.|....- . ..+....|..+-. ..-..++..+
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~-~--~~lsL~~g~~gL~~dipqaEGiamDd 293 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV-I--ELLSLTKGNHGLSSDIPQAEGIAMDD 293 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe-e--eeEEeccCCCCCcccCCCcceeEECC
Confidence 111111222 2366777775 46677778888888777776532 2 2333333332211 2346799999
Q ss_pred CCCEEEEEeCCeEEEE
Q 001776 988 DQTHLLAVHETQIAIY 1003 (1015)
Q Consensus 988 dg~~l~~~~d~~i~vw 1003 (1015)
+|...+++.-+-.+.+
T Consensus 294 ~g~lYIvSEPnlfy~F 309 (316)
T COG3204 294 DGNLYIVSEPNLFYRF 309 (316)
T ss_pred CCCEEEEecCCcceec
Confidence 9998888755544433
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.59 Score=47.09 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=102.6
Q ss_pred CccEEEEccCCCEEEEEc-CC--eEEEEeCCCCceeEEeCCCC-CCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEE
Q 001776 845 AVPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK 920 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~s-dg--~i~iwd~~~~~~~~~l~~~~-~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~ 920 (1015)
....+.|..+|.++-+.+ -| .|+.+|+.+++......-.. ----.++.. ++++....-.++...+||.++.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 345678878888887776 44 69999999998876644222 122345554 3455556668899999999999999
Q ss_pred EEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE-E-eCC
Q 001776 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA-V-HET 998 (1015)
Q Consensus 921 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~-~d~ 998 (1015)
.++.- .+.=+.++ .|+..|+..+....++++|.++-+......+.. .+... ..+.-+-+- +|. |.+ - ...
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv--~~LNELE~i-~G~-IyANVW~td 195 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPV--SNLNELEYI-NGK-IYANVWQTD 195 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE-----EEEEEEE-TTE-EEEEETTSS
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEEC--CCcEeEEEE-cCE-EEEEeCCCC
Confidence 88864 45667777 477778877777889999988766544333332 22111 346667776 454 555 4 677
Q ss_pred eEEEEEcCCceEeccC
Q 001776 999 QIAIYEAPKLECLKQV 1014 (1015)
Q Consensus 999 ~i~vwd~~~g~~l~~~ 1014 (1015)
.|..-|..+|+.+..+
T Consensus 196 ~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEEETTT-BEEEEE
T ss_pred eEEEEeCCCCeEEEEE
Confidence 8889999999988754
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.1 Score=45.11 Aligned_cols=203 Identities=10% Similarity=0.086 Sum_probs=116.4
Q ss_pred CCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccc-cccCCCCCCCCCccEEEEcc
Q 001776 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILM-TNDISDTNPEDAVPCFALSK 853 (1015)
Q Consensus 775 ~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~l~~~~~~~~v~~l~~s~ 853 (1015)
...-.+.+.|..+|..+-+.+.-|.-.+ +.+|+.+|+.. ...++ ....-..++...
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l--------------------~~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSL--------------------RKVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEE--------------------EEEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEE--------------------EEEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 3455678889889988888887764332 23355555533 22232 233334555554
Q ss_pred CCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCcc-----C
Q 001776 854 NDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ-----K 928 (1015)
Q Consensus 854 dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~-----~ 928 (1015)
|.-+..+--++...+||..+.+.+.++.- .+.=..++. |++.|+..+....++++|.++.+....+.... .
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 43344444489999999999999998863 455567773 56667666667789999988877776664322 2
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEec-------CCCccccCCceEEEEccCCCEEEEEeCCeEE
Q 001776 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP-------NGRTASALADTRVQFHLDQTHLLAVHETQIA 1001 (1015)
Q Consensus 929 ~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~-------~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~ 1001 (1015)
.++.+.+- +|...|=.=....|..-|..+|+......+... ....+..+-...+|+.|.++.|++.+..-=+
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ 254 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK 254 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence 35567776 676666555566677888888886544322211 1111112456889998887777764443333
Q ss_pred EEEc
Q 001776 1002 IYEA 1005 (1015)
Q Consensus 1002 vwd~ 1005 (1015)
+|.+
T Consensus 255 lyeV 258 (264)
T PF05096_consen 255 LYEV 258 (264)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.022 Score=66.31 Aligned_cols=99 Identities=20% Similarity=0.290 Sum_probs=71.3
Q ss_pred EEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCC
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 371 lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~ 450 (1015)
.++.|+..|.|...|+...-... .| -..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 57889999999999987642100 00 1224579999999999999999999999999999998
Q ss_pred ceeeeeeEEecccCc---eeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 451 DELRNHLEIEAHVGS---VNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 451 ~~~~~~~~~~~h~~~---V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
+.++ .+..|..+ |..+.+..++. .++++...|. +|.+
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEE
Confidence 8777 34444444 44445555555 6788777776 5653
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.6 Score=45.54 Aligned_cols=113 Identities=21% Similarity=0.268 Sum_probs=58.3
Q ss_pred CeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccC----CCEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLF 433 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l 433 (1015)
..++|+|.|||+ ++++ ...|.|++++ ..+.... .+ -++ ..+..........++++|+ +.+.
T Consensus 3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence 467999999998 5554 5699999999 4444311 00 000 1224455678899999994 4433
Q ss_pred EEEECC--------CeEEEEEccCC-ceee---ee-eEEec---ccCceeEEEEecCCCceEEEEEeCCC
Q 001776 434 GVAYSK--------HIVHLYTYHGG-DELR---NH-LEIEA---HVGSVNDLAFSYPNKQLSVVTCGEDR 487 (1015)
Q Consensus 434 as~~~d--------g~v~iwd~~~~-~~~~---~~-~~~~~---h~~~V~~~~~s~~~~~~~l~s~s~dg 487 (1015)
++.+.. ..|.-|....+ ..+. .+ ..+.. ....-..|+|.|||. +.++.+..+
T Consensus 68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 433321 23444555443 1111 11 01121 233456699999995 444444433
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.44 Score=55.52 Aligned_cols=197 Identities=8% Similarity=-0.059 Sum_probs=94.7
Q ss_pred cCCCEEEEEECC------CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC-----eEEEEEcCC
Q 001776 428 PDGTLFGVAYSK------HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVT 496 (1015)
Q Consensus 428 pdg~~las~~~d------g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg-----~v~vwd~~~ 496 (1015)
-++...+.||.+ ..+..||..++.- .....+....... +++ .-+|+ +.+.||.++ ++..||..+
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~-~~~-~~~g~--IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRF-SLA-VIDDT--IYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhce-eEE-EECCE--EEEECCcCCCCCCceEEEEECCC
Confidence 367777777753 3477888776532 1111111111111 222 23565 567777654 478899876
Q ss_pred CceEE--EeeCCCCCEEEEeecccCCccEEEEEeCCC-----------------------eEEEEeCCCCCceeeecCCC
Q 001776 497 GTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDG-----------------------KIKAWLYDNLGSRVDYDAPG 551 (1015)
Q Consensus 497 ~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg-----------------------~i~vwd~~~~~~~~~~~~~~ 551 (1015)
.+... .+.........+.+ +|.+.+.|+.++ .+..||..+..=...-....
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred CeEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 64332 11111111112222 235666676542 36667766543211111111
Q ss_pred CceEEEEECCCCCEEEEEeeCCCC--CceEEEEeCCC-Ceee--EEeeCCCCCCeEEEEEeCCCCEEEEEeCCC--cEEE
Q 001776 552 HSSTMMAYSADGARLFSCGTNKEG--ESYLVEWNESE-GAVK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEF--MIKF 624 (1015)
Q Consensus 552 ~~i~~~~~s~~~~~l~~~~~d~~~--~~~i~iwd~~~-~~~~--~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg--~i~v 624 (1015)
......+..-+++..+.|+.++.. ...+..||..+ .+.. ..+..... ....+. -++...++||.+| .+..
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~--~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTIL--HDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEE--ECCEEEEEeeecceeehhh
Confidence 111111223345666666543221 12467899887 4443 22222221 222222 2677888888777 6777
Q ss_pred EeCCCCceeEEE
Q 001776 625 WDMDNVNLLASI 636 (1015)
Q Consensus 625 wd~~~~~~~~~~ 636 (1015)
||..+.+.....
T Consensus 530 yd~~~~~W~~~~ 541 (557)
T PHA02713 530 FNVYTYEWNHIC 541 (557)
T ss_pred cCcccccccchh
Confidence 777766654433
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.6 Score=47.12 Aligned_cols=234 Identities=14% Similarity=0.083 Sum_probs=98.6
Q ss_pred ccccc-ccccccceeeeeecccc-CCcceeEeccCC---CcCCccEEEEEEcCCCcEEEEeccC------cEEEEeeccc
Q 001776 739 VKPKI-ADEAVEKSRIWKLTEIT-EPSQCRSLRLPD---NLTAMRVSRLIYTNSGLAILALASN------AVHKLWKWPR 807 (1015)
Q Consensus 739 ~~~l~-~~~~d~~v~iw~~~~~~-~~~~~~~~~~~~---~~~~~~i~~l~~s~dg~~l~~~~~d------g~i~vw~~~~ 807 (1015)
.++|+ -+-..++|.+.|+.... .+...+.+.... +..-..-..+-.-|+|+.++++-.| |.+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 34444 44477899999988443 333333332101 1112333445556788877775432 3333333221
Q ss_pred cCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEc---------------------CCeE
Q 001776 808 NERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS---------------------GGKI 866 (1015)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s---------------------dg~i 866 (1015)
+.. ..-|+...+ ...--..+-+.|..+.+++.. ..++
T Consensus 167 --f~v---------~g~We~~~~-----------~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l 224 (461)
T PF05694_consen 167 --FEV---------KGRWEKDRG-----------PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL 224 (461)
T ss_dssp ----E---------EEE--SB-T-----------T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred --ccc---------cceeccCCC-----------CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence 100 111222111 122234455556656665541 3479
Q ss_pred EEEeCCCCceeEEeCCCCC--CeeEEEEcCC-CCcEEEEEE-cCCeEEEEEc-ccc----eEEEEEcCc-----------
Q 001776 867 SLFNMMTFKTMTTFMPPPP--AATFLAFHPQ-DNNIIAIGM-EDSSIQIYNV-RVD----EVKTKLKGH----------- 926 (1015)
Q Consensus 867 ~iwd~~~~~~~~~l~~~~~--~i~~l~~sp~-d~~~la~g~-~dg~v~vwd~-~~~----~~~~~l~~h----------- 926 (1015)
.+||+.+.+.++++.-... ....+.|..+ +..+-.+|+ -..+|..|-- +.+ +.+..+..-
T Consensus 225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence 9999999999998874332 2455666541 233333332 3344544433 333 222222211
Q ss_pred ------cCCeEEEEEeCCCCEEEEEe-CCCcEEEEEccCcccccceEEEecCCCc------------cccCCceEEEEcc
Q 001776 927 ------QKRITGLAFSNTLNVLVSSG-ADSQLCVWSTDGWEKQASKFLTIPNGRT------------ASALADTRVQFHL 987 (1015)
Q Consensus 927 ------~~~v~~l~~spdg~~l~s~s-~dg~v~vWd~~~~~~~~~~~~~~~~~~~------------~~~~~v~~l~fs~ 987 (1015)
..-|+.+.+|.|.++|..+. .+|.|+.||+......+.. -++.-|-. .-.+...-+..|-
T Consensus 305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~-gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV-GQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE-EEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE-eEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 23478999999999987665 5899999999885433221 11111110 0113457899999
Q ss_pred CCCEEEEE
Q 001776 988 DQTHLLAV 995 (1015)
Q Consensus 988 dg~~l~~~ 995 (1015)
||+.|+++
T Consensus 384 DGkRlYvT 391 (461)
T PF05694_consen 384 DGKRLYVT 391 (461)
T ss_dssp TSSEEEEE
T ss_pred CCeEEEEE
Confidence 99999984
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.022 Score=40.22 Aligned_cols=34 Identities=26% Similarity=0.559 Sum_probs=29.7
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcc
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRE 390 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~ 390 (1015)
....|.+++|+|... ++|.|+.+|.|.|+.+ +++
T Consensus 10 l~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCc
Confidence 345799999999999 8999999999999998 444
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.5 Score=44.32 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=82.1
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEc
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~ 494 (1015)
.+-...|.++.|+|+.+.|.+..+...-.||=...|+.++.. .+.+-. ..-.+.+..+|. +.++--.++.+.++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti-PL~g~~-DpE~Ieyig~n~--fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI-PLTGFS-DPETIEYIGGNQ--FVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe-cccccC-ChhHeEEecCCE--EEEEehhcceEEEEEE
Confidence 444556999999999999999988888788877778877644 344422 345678887787 7888888999998887
Q ss_pred CCCceEEEe-------e--CC-CCCEEEEeecccCCccEEEEEeCCCeEEEEeCC
Q 001776 495 VTGTKQYIF-------E--GH-ESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539 (1015)
Q Consensus 495 ~~~~~~~~~-------~--~h-~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~ 539 (1015)
..+..+..+ . .+ +.....++|.+.. +.++.+-+-.-+.+|.+.
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEe
Confidence 765332211 1 12 4567788886654 567777666666666554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.7 Score=44.07 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=82.0
Q ss_pred CCCCccEEEEccCCCEEEEEcCCe-EEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEE-cccceE
Q 001776 842 PEDAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYN-VRVDEV 919 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~sdg~-i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd-~~~~~~ 919 (1015)
..+.+..+..++||+++++++.|. ..-||--...-...-+.....|.+|.|+| ++.+.+.+ ..|.|+.=+ ....+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCccc
Confidence 456788889999999999999665 45676432111111222457899999999 77666644 888888877 222222
Q ss_pred EEE----EcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE
Q 001776 920 KTK----LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV 995 (1015)
Q Consensus 920 ~~~----l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~ 995 (1015)
-.. +..-.-.+..++|.+++...|+|+. |++ +...+.|+ .+.......... +....+.|.++.+-++.|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGk--tW~~~~~~~~~~---~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGK--TWQKDRVGENVP---SNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTS--S-EE-GGGTTSS---S---EEEEEETTEEEEE-
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCc--cceECccccCCC---CceEEEEEcCCCceEEEC
Confidence 111 1112234789999999888886664 444 33444444 122222111111 457789999888889999
Q ss_pred eCCeEEEE
Q 001776 996 HETQIAIY 1003 (1015)
Q Consensus 996 ~d~~i~vw 1003 (1015)
.+|.|.-|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99988766
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.48 Score=55.21 Aligned_cols=190 Identities=6% Similarity=-0.012 Sum_probs=93.1
Q ss_pred CCCceEEEEEeCC------CeEEEEEcCCCceEE--EeeCCCCCEEEEeecccCCccEEEEEeCCC-----eEEEEeCCC
Q 001776 474 PNKQLSVVTCGED------RVIKVWDAVTGTKQY--IFEGHESPVYSICPHHKENIQFIFSTATDG-----KIKAWLYDN 540 (1015)
Q Consensus 474 ~~~~~~l~s~s~d------g~v~vwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~ 540 (1015)
++. +++.||.+ ..+..||..+..... .+.........+.+ +|.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 357788877664321 11111111111221 235667777654 477888775
Q ss_pred CCceee--ecCCCCceEEEEECCCCCEEEEEeeCCCC-------------------CceEEEEeCCCCeeeEEeeCCCCC
Q 001776 541 LGSRVD--YDAPGHSSTMMAYSADGARLFSCGTNKEG-------------------ESYLVEWNESEGAVKRTYHGLGKR 599 (1015)
Q Consensus 541 ~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~d~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~ 599 (1015)
..=... ..........+ .-+|+..+.||.++.. ...+..||+.+.+....-.-...
T Consensus 377 ~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~- 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG- 453 (557)
T ss_pred CeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-
Confidence 432211 11111111122 2356666666654211 24588899887765432221111
Q ss_pred CeEEEEEeCCCCEEEEEeCC------CcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCC--cEEEEE
Q 001776 600 SVGVVQFDTTKNRFLAAGDE------FMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN--GIKILA 670 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iw~ 670 (1015)
....-...-++...+.||.+ ..+..||..+ .+....-...........+++ +|...++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 11111222345666667643 2467899887 444322222111112222222 678888998888 677777
Q ss_pred ccCC
Q 001776 671 NADG 674 (1015)
Q Consensus 671 ~~~~ 674 (1015)
+.++
T Consensus 532 ~~~~ 535 (557)
T PHA02713 532 VYTY 535 (557)
T ss_pred cccc
Confidence 7766
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.03 Score=39.51 Aligned_cols=34 Identities=18% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCc
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 451 (1015)
Q Consensus 417 h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~ 451 (1015)
....|.+++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3467999999999999999999999999998 444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.9 Score=50.18 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=118.6
Q ss_pred CCEEEEEECCCeEEEEEccCCceeeeeeEEecccC------ceeEEEEec----------------CCCceEEEEEeCCC
Q 001776 430 GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVG------SVNDLAFSY----------------PNKQLSVVTCGEDR 487 (1015)
Q Consensus 430 g~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~------~V~~~~~s~----------------~~~~~~l~s~s~dg 487 (1015)
+..|..++.++.|.-.|..+|+.+.... ...... ....+++.. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d-~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFD-PKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 5566677778888888888887665321 111000 011222221 233 577888999
Q ss_pred eEEEEEcCCCceEEEeeCCCCCEE-------------EEeecccCCccEEEEEeC----------CCeEEEEeCCCCCce
Q 001776 488 VIKVWDAVTGTKQYIFEGHESPVY-------------SICPHHKENIQFIFSTAT----------DGKIKAWLYDNLGSR 544 (1015)
Q Consensus 488 ~v~vwd~~~~~~~~~~~~h~~~v~-------------~i~~~~~~~~~~l~s~~~----------dg~i~vwd~~~~~~~ 544 (1015)
.+.-.|.++|+.+..+.. .+.|. .+.-.|---+..+++++. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999999987642 22221 000000001135666642 688999999998877
Q ss_pred eeecCC---------CC--------ce-EEEEECCCCCEEEEEeeC--------------CCCCceEEEEeCCCCeeeEE
Q 001776 545 VDYDAP---------GH--------SS-TMMAYSADGARLFSCGTN--------------KEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 545 ~~~~~~---------~~--------~i-~~~~~s~~~~~l~~~~~d--------------~~~~~~i~iwd~~~~~~~~~ 592 (1015)
..+... .. .+ ..+++.++...++....+ ..-...|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 665421 00 11 234555655555543211 11234577889999988877
Q ss_pred eeC-CCC-------CCeEEEEEeC-CCC---EEEEEeCCCcEEEEeCCCCceeEEEe
Q 001776 593 YHG-LGK-------RSVGVVQFDT-TKN---RFLAAGDEFMIKFWDMDNVNLLASID 637 (1015)
Q Consensus 593 ~~~-~~~-------~~i~~v~~~~-~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~ 637 (1015)
++. |++ ....-+.+.. +|+ .++.++.+|.++++|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 221 0111122332 453 78888899999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.035 Score=64.78 Aligned_cols=100 Identities=16% Similarity=0.316 Sum_probs=74.8
Q ss_pred CCCEEEEEc-CCeEEEEeCCCC-ceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeE
Q 001776 854 NDSYVMSAS-GGKISLFNMMTF-KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRIT 931 (1015)
Q Consensus 854 dg~~la~~s-dg~i~iwd~~~~-~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~ 931 (1015)
.+-.++.|+ .|.+-..|+... .....=..-.++|++++|+. +|.+++.|-.+|.|.+||+..++.++.+..|..+.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788887 577888887542 11111112346899999999 999999999999999999999999999887777766
Q ss_pred EEEE---eCCCCEEEEEeCCCcEEEEEc
Q 001776 932 GLAF---SNTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 932 ~l~~---spdg~~l~s~s~dg~v~vWd~ 956 (1015)
.+-+ ..++..+.+++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6544 456677888888885 5654
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.4 Score=46.57 Aligned_cols=198 Identities=11% Similarity=0.089 Sum_probs=104.9
Q ss_pred cccccccccccceeeeeeccccCCcceeEeccCCCcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCce--
Q 001776 739 VKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKA-- 816 (1015)
Q Consensus 739 ~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~-- 816 (1015)
...+..-+.||.+.+++-+...-......+.+| ..++|.+.-..+++++.+..+.-|....-....+...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llP--------gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~ 216 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLP--------GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ 216 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCC--------cCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence 346677888999999986643211111112222 3577889888999999998998887643211111000
Q ss_pred --------ecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCCCCee
Q 001776 817 --------TTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAAT 888 (1015)
Q Consensus 817 --------~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~ 888 (1015)
....-..-|...-|+ .--.|..+.++.....+++-+..++.+.+- +|......+-.-.+..
T Consensus 217 ~~~~~~~~~~k~l~~dWs~nlGE----------~~l~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~ 285 (418)
T PF14727_consen 217 SGTEQDISSGKKLNPDWSFNLGE----------QALDIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSC 285 (418)
T ss_pred ccccccccccccccceeEEECCc----------eeEEEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceee
Confidence 000011112222221 111233344444555666666777777765 4544443332122222
Q ss_pred EEEE------cCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEe---CCCCEEEEEeCCCcEEEEEccC
Q 001776 889 FLAF------HPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS---NTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 889 ~l~~------sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~s---pdg~~l~s~s~dg~v~vWd~~~ 958 (1015)
...| .+..+..+++++.++++.||.= .+++...+....+| ++... .-...+++-+.+|.+.+-=+-|
T Consensus 286 ~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 286 FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2222 1211235888999999999963 34444444333333 33332 2345788889999988765544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.9 Score=41.73 Aligned_cols=209 Identities=16% Similarity=0.143 Sum_probs=111.4
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCC-CceEEEEEeCCCeEEEEEcC--CCceEEEeeC--
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN-KQLSVVTCGEDRVIKVWDAV--TGTKQYIFEG-- 505 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~-~~~~l~s~s~dg~v~vwd~~--~~~~~~~~~~-- 505 (1015)
.++.+--..|.|+-||+...+..+. .+.+.. +..+.+--.+ .+.+.+.++..-.|.-||-. .-...+++..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra--~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~ 103 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRA--KIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQ 103 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEE--EEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccC
Confidence 3444444567777799887654332 233321 3333433222 22245555555555567732 2233333211
Q ss_pred ---CCCCEEEEeecccCCccEEEEEeC---------CCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCC
Q 001776 506 ---HESPVYSICPHHKENIQFIFSTAT---------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573 (1015)
Q Consensus 506 ---h~~~v~~i~~~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~ 573 (1015)
...+.+.-.. +++|++..-.-. .|.++.|-.. ..+..+...-.--+.++|+.+.+.++..-.
T Consensus 104 ~d~kknR~NDgkv--dP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs-- 177 (310)
T KOG4499|consen 104 PDRKKNRLNDGKV--DPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDS-- 177 (310)
T ss_pred chHHhcccccCcc--CCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEcc--
Confidence 1222333333 345566332111 2445555332 222222222223357889988888776532
Q ss_pred CCCceEEEEe--CCCCee-----eEEeeC---CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCC
Q 001776 574 EGESYLVEWN--ESEGAV-----KRTYHG---LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQ 643 (1015)
Q Consensus 574 ~~~~~i~iwd--~~~~~~-----~~~~~~---~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 643 (1015)
.+-.|.-|| ..+|.. +..++. ........+++..+|+..+++-..++|...|..+|+.+..+... ..
T Consensus 178 -ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~ 254 (310)
T KOG4499|consen 178 -LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TP 254 (310)
T ss_pred -CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CC
Confidence 233465576 555533 222221 11111233556778888888888899999999999999999887 66
Q ss_pred CcceEEEcC
Q 001776 644 ASPCIRFNK 652 (1015)
Q Consensus 644 ~v~~v~~s~ 652 (1015)
.|++++|--
T Consensus 255 qitsccFgG 263 (310)
T KOG4499|consen 255 QITSCCFGG 263 (310)
T ss_pred ceEEEEecC
Confidence 899999964
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.6 Score=50.88 Aligned_cols=235 Identities=12% Similarity=0.035 Sum_probs=115.0
Q ss_pred EEEEEecCC------eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECC-C---
Q 001776 371 LLVVGTNMG------DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSK-H--- 440 (1015)
Q Consensus 371 lla~g~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d-g--- 440 (1015)
+++.|+.++ .+..||..+++......+ . +...-.+++.. ++...++||.| |
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-----------------~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-----------------P-SPRCRVGVAVL-NGKLYVVGGYDSGSDR 347 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCC-----------------C-cccccccEEEE-CCEEEEEccccCCCcc
Confidence 667777663 588888888754432111 1 22223333333 56788888888 3
Q ss_pred --eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCC-----eEEEEEcCCCceEEEeeCCCCCEEEE
Q 001776 441 --IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDR-----VIKVWDAVTGTKQYIFEGHESPVYSI 513 (1015)
Q Consensus 441 --~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~h~~~v~~i 513 (1015)
++..||..+++ -.....+........... -+|. +.+.||.|| ++-.||..+.+.-..-. ........
T Consensus 348 l~~ve~YD~~~~~-W~~~a~M~~~R~~~~v~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQ-WTPVAPMNTKRSDFGVAV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCc-eeccCCccCccccceeEE--ECCE--EEEEeccccccccccEEEecCCCCcccccCC-CCcceeee
Confidence 47788887765 221112222222222222 2466 788888887 46678876654322111 11111111
Q ss_pred eecccCCccEEEEEeCCC------eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCC-CCceEEEEeCCC
Q 001776 514 CPHHKENIQFIFSTATDG------KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE-GESYLVEWNESE 586 (1015)
Q Consensus 514 ~~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~-~~~~i~iwd~~~ 586 (1015)
... .-+|.+.++|+.++ ++..||..+..-...-.........-.-.-++...+.||.++. ....+..||..+
T Consensus 422 gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~ 500 (571)
T KOG4441|consen 422 GVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPET 500 (571)
T ss_pred EEE-EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCC
Confidence 111 12336777777554 4677777665432221111111111122235666666666541 233477899887
Q ss_pred CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCc-----EEEEeCCCCce
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-----IKFWDMDNVNL 632 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~ 632 (1015)
.+....-.-........+ ..-++...++||.||. |..||..+.+.
T Consensus 501 ~~W~~v~~m~~~rs~~g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 501 NQWTMVAPMTSPRSAVGV-VVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CceeEcccCccccccccE-EEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 765444211111011111 2224566677776653 56666655543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.29 E-value=5.9 Score=43.63 Aligned_cols=277 Identities=11% Similarity=0.147 Sum_probs=144.2
Q ss_pred ccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc-----CCCEEEEEECC
Q 001776 365 HPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----DGTLFGVAYSK 439 (1015)
Q Consensus 365 sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~las~~~d 439 (1015)
+++++..+++|+..|.++||+...+......-+ +-..-+.+|..+..-+ +...||+ =.-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~ll---------------lE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLL---------------LETQLKDPILQVECGKFVSGSEDLQLAV-LHP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEE---------------EEEecCCcEEEEEeccccCCCCcceEEE-ecC
Confidence 345555789999999999999865442111000 0123346777777543 3335555 445
Q ss_pred CeEEEEEccCC-------ceeeeeeEEecccC--ceeEEEEecC----CCceEEEEEeCCCeEEEEEcCCCceEEEeeC-
Q 001776 440 HIVHLYTYHGG-------DELRNHLEIEAHVG--SVNDLAFSYP----NKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG- 505 (1015)
Q Consensus 440 g~v~iwd~~~~-------~~~~~~~~~~~h~~--~V~~~~~s~~----~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~- 505 (1015)
..+.||.+... .... ...+..|.- ....+++-|- ++. +|..=+.||.+.+++-+.-...+.+..
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEE-EEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCC
Confidence 56888887321 1111 112223332 2233333332 233 788889999999999544433344433
Q ss_pred -CCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce-----------------------eeecCCCCc---eEEEE
Q 001776 506 -HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR-----------------------VDYDAPGHS---STMMA 558 (1015)
Q Consensus 506 -h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-----------------------~~~~~~~~~---i~~~~ 558 (1015)
..+++ +|.+.. +.+++++.+..+..|....-... ..+.. +.. +..+.
T Consensus 175 llPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~ 248 (418)
T PF14727_consen 175 LLPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVR 248 (418)
T ss_pred CCCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEE
Confidence 23443 444444 47888888888888865211000 01111 112 23333
Q ss_pred ECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC----CC---CEEEEEeCCCcEEEEeCCCCc
Q 001776 559 YSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT----TK---NRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 559 ~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~----~~---~~l~~~~~dg~i~vwd~~~~~ 631 (1015)
++.....+++-+ +..+.+.+. +|......+-.-. +.....|.. ++ ..++.++.++++.||.= .+
T Consensus 249 ~~~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krLd~~-p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~ 319 (418)
T PF14727_consen 249 FSSSESDIVVLG-----ERSLFCLKD-NGSLRFQKRLDYN-PSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TT 319 (418)
T ss_pred cCCCCceEEEEe-----cceEEEEcC-CCeEEEEEecCCc-eeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--Ce
Confidence 443444455544 224777665 4544433332211 222222221 22 24888889999999863 33
Q ss_pred eeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 632 LLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 632 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
++-..+.....-.+....|..-...+++-+.+|.+.+--+-|.
T Consensus 320 L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 320 LVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 3333322211111222223333568888899999999877665
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.17 E-value=9.8 Score=45.49 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=67.0
Q ss_pred EEEccCCCEEEEEcCCeEEEEeCCCCceeEEeC--CCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEccc-ceEEEEEcC
Q 001776 849 FALSKNDSYVMSASGGKISLFNMMTFKTMTTFM--PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV-DEVKTKLKG 925 (1015)
Q Consensus 849 l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~--~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~-~~~~~~l~~ 925 (1015)
.|..|-..++.+|-...+++||+...++++... .-...|+.+.+. +..+++|+..-.|..+..+. +..+..+..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 455677778888889999999998776665533 234567888774 45777776655555544432 333444433
Q ss_pred --ccCCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q 001776 926 --HQKRITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 926 --h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~ 957 (1015)
-...|+++.+- |-..+|.++.-|.+.+-.+.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 22346666555 55678888888877766554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.55 Score=53.90 Aligned_cols=121 Identities=11% Similarity=0.160 Sum_probs=77.9
Q ss_pred eCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEc-CccCCeEEEEEe--CCCCEEEEEeCCCcEEEEEc
Q 001776 880 FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-GHQKRITGLAFS--NTLNVLVSSGADSQLCVWST 956 (1015)
Q Consensus 880 l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~-~h~~~v~~l~~s--pdg~~l~s~s~dg~v~vWd~ 956 (1015)
+.........+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333344455555555 55555555555689999999886543322 356789999986 78999999999999999854
Q ss_pred c-----Cccc--ccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001776 957 D-----GWEK--QASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEA 1005 (1015)
Q Consensus 957 ~-----~~~~--~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~ 1005 (1015)
. ...+ ...+.+.+ ..+++ .+|....|.+||.+++ |.++++.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-SSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEe-ecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence 2 1111 11111222 22333 4688999999998554 44788888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.9 Score=43.10 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=85.2
Q ss_pred CeeEEEeccCCCeEEEEEecCC--eEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEEE
Q 001776 358 AVKSMDFHPVQQILLVVGTNMG--DVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 358 ~V~~~~~sp~g~~lla~g~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (1015)
.+.+.++|++|+.++++...++ .++++......... + ....++.-+|++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~--------------------~--~g~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV--------------------L--TGGSLTRPSWDPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee--------------------c--cCCccccccccCCCCEEEE
Confidence 6889999999997767663333 45555443322111 1 2237888899999888777
Q ss_pred EECCCeEEEEE-ccCCceeeeeeEEecccCceeEEEEecCCCceEEEE-EeCCCeEEEEEcC---CC--c----eEEEee
Q 001776 436 AYSKHIVHLYT-YHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVT-CGEDRVIKVWDAV---TG--T----KQYIFE 504 (1015)
Q Consensus 436 ~~~dg~v~iwd-~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s-~s~dg~v~vwd~~---~~--~----~~~~~~ 504 (1015)
...+...+++. ..++...........-...|..+++||||.++.++. ...++.|.+=-+. .+ . ......
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~ 162 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP 162 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc
Confidence 77666667764 333332221111121222899999999999743333 2334667665443 23 1 112222
Q ss_pred CCCCCEEEEeecccCCccEEEEEeC
Q 001776 505 GHESPVYSICPHHKENIQFIFSTAT 529 (1015)
Q Consensus 505 ~h~~~v~~i~~~~~~~~~~l~s~~~ 529 (1015)
.....+.++.|..+. .+++.+..
T Consensus 163 ~~~~~v~~v~W~~~~--~L~V~~~~ 185 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDS--TLVVLGRS 185 (253)
T ss_pred cccCcceeeeecCCC--EEEEEeCC
Confidence 334678889986544 45554444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.91 Score=52.14 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=77.0
Q ss_pred CceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEee-CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCC---
Q 001776 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD--- 539 (1015)
Q Consensus 464 ~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~--- 539 (1015)
....-+.-|.-++ ..+.-+....+.|||.+.+....+-. ...+.|.++.|...++++.+++.+..+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3445555555555 34444445589999998887554322 35788999999999999999999999999998431
Q ss_pred --CCCc----eee--ec-CCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 540 --NLGS----RVD--YD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 540 --~~~~----~~~--~~-~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
...+ +.. +. ...++|.+..|.++|..++.++. .+.++|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 111 22 23468899999999987776642 4888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.62 E-value=6.8 Score=46.67 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=38.2
Q ss_pred cCCeEEEEEcCCcceEeEeeeEEEeccC---CCcccccccc-ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEc
Q 001776 377 NMGDVMLWEVGSRERIAVKSFKVWELGA---CSMPLQASLS-SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTY 447 (1015)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~ 447 (1015)
.|+.+++||-....... .+++.-+-.. ....++.... ..-.-.|..|.+||+|++||..|..| |.|-.+
T Consensus 40 ~d~~L~vWd~~e~~l~~-~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 40 RDGDLFVWDSSECCLLT-VNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eCCEEEEEECCCCEEEE-EeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 36788888866554322 2222211111 0011111111 12335799999999999999999877 444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.50 E-value=3.6 Score=48.92 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.2
Q ss_pred CCcceEEEcCC---CCEEEEEeCCCcEEEEEccCCceeeeee
Q 001776 643 QASPCIRFNKE---GILLAVSTNDNGIKILANADGIRLLRTV 681 (1015)
Q Consensus 643 ~~v~~v~~s~~---~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 681 (1015)
..|..+.|+|. +..|++-+.|+++|+||+.....+...+
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 35667888885 5788888999999999997665444444
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.3 Score=57.80 Aligned_cols=146 Identities=14% Similarity=0.108 Sum_probs=96.7
Q ss_pred CCCccEEEEccCCCEEEEEc---CCeEEEEeCCCCceeE-----EeCCC------CCCeeEEEEcCCCCcEEEEEEcCCe
Q 001776 843 EDAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMT-----TFMPP------PPAATFLAFHPQDNNIIAIGMEDSS 908 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~s---dg~i~iwd~~~~~~~~-----~l~~~------~~~i~~l~~sp~d~~~la~g~~dg~ 908 (1015)
.-.+..+...+|+...++.. +..|..||+.+...-+ -|..| ..-..++.|.|.-....|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45677788888988776654 3469999987533221 12211 2335678888743445667778999
Q ss_pred EEEEEcccc-eEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEcc
Q 001776 909 IQIYNVRVD-EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHL 987 (1015)
Q Consensus 909 v~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~ 987 (1015)
|+|..+.-. ..+..+. -...+++++|+|.|+.++.|-..|++.-|...-..... +..+.-.. ...|.+|+|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCC--CcceeEEEEec
Confidence 998877533 2223333 45668999999999999999999999988866532111 11111111 25699999999
Q ss_pred CCCEEEE
Q 001776 988 DQTHLLA 994 (1015)
Q Consensus 988 dg~~l~~ 994 (1015)
...+|++
T Consensus 254 t~eflvv 260 (1405)
T KOG3630|consen 254 TQEFLVV 260 (1405)
T ss_pred ceeEEEE
Confidence 9999888
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=9.1 Score=41.39 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=93.7
Q ss_pred CCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEe-CCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEE
Q 001776 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTF-MPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 921 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l-~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~ 921 (1015)
...+.++.+.|++.+++++..|.+..-.-..++.-... ......++++++.+ +++.+++| ..|.+++=..+.|+.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccc
Confidence 45678899999999998888886553211222222222 23346789999999 78777665 56766533344443222
Q ss_pred EEcC----ccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeC
Q 001776 922 KLKG----HQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE 997 (1015)
Q Consensus 922 ~l~~----h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 997 (1015)
.... -...+..+.+.|++..++ ++.+|.|. ...+.|+ .+.......+.. .....+.|..+++.+++|..
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~--tW~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGK--TWEKDPVGEEVP---SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCC--CCeECCcCCCCC---cceEEEEEeCCCceEEECCC
Confidence 2111 123477899999887655 55567554 4444443 222222111211 34678889889999999999
Q ss_pred CeEEEEEc
Q 001776 998 TQIAIYEA 1005 (1015)
Q Consensus 998 ~~i~vwd~ 1005 (1015)
|.|..|+-
T Consensus 323 G~il~~~~ 330 (334)
T PRK13684 323 GVLLRYVG 330 (334)
T ss_pred ceEEEecC
Confidence 99988864
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=2 Score=50.28 Aligned_cols=150 Identities=6% Similarity=-0.042 Sum_probs=70.8
Q ss_pred cEEEEEeCC-----CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCC--CCceEEEEeCCCCeeeEEee
Q 001776 522 QFIFSTATD-----GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE--GESYLVEWNESEGAVKRTYH 594 (1015)
Q Consensus 522 ~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~--~~~~i~iwd~~~~~~~~~~~ 594 (1015)
.+.+.|+.+ ..+..||..+..-...-..........+..-+++..+.||.+.. ....+..||+.+.+....-.
T Consensus 344 ~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 423 (534)
T PHA03098 344 RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP 423 (534)
T ss_pred EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC
Confidence 566777765 34667776654322111111111111112235666666663322 12458899988765543221
Q ss_pred CCCCCCeEEEEEeCCCCEEEEEeCC--------CcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC---
Q 001776 595 GLGKRSVGVVQFDTTKNRFLAAGDE--------FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND--- 663 (1015)
Q Consensus 595 ~~~~~~i~~v~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--- 663 (1015)
......-.+ +...++..++.||.+ ..+.+||..+.+....-...........+. .++..++.|+.+
T Consensus 424 ~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 424 LPISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEY 500 (534)
T ss_pred CCccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCc
Confidence 111101112 222345566666632 238889988766443321111011111222 266777777654
Q ss_pred --CcEEEEEccCC
Q 001776 664 --NGIKILANADG 674 (1015)
Q Consensus 664 --g~i~iw~~~~~ 674 (1015)
+.+.+||..+.
T Consensus 501 ~~~~v~~yd~~~~ 513 (534)
T PHA03098 501 YINEIEVYDDKTN 513 (534)
T ss_pred ccceeEEEeCCCC
Confidence 46778887765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.6 Score=48.13 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=80.0
Q ss_pred CCccEEEEccCCCEEEEEc------------C-CeEEEEeCCC--Cc--eeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC
Q 001776 844 DAVPCFALSKNDSYVMSAS------------G-GKISLFNMMT--FK--TMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906 (1015)
Q Consensus 844 ~~v~~l~~s~dg~~la~~s------------d-g~i~iwd~~~--~~--~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d 906 (1015)
.....|+|.++|+++++-. . +.|.+++-.+ |. ....+.......+.+++.+ ++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999888752 2 3777776543 32 2234443344568899998 77 444 4444
Q ss_pred CeEEEEEccc-------ceEEE-EEcC----ccCCeEEEEEeCCCCEEEEEeCC-------------------CcEEEEE
Q 001776 907 SSIQIYNVRV-------DEVKT-KLKG----HQKRITGLAFSNTLNVLVSSGAD-------------------SQLCVWS 955 (1015)
Q Consensus 907 g~v~vwd~~~-------~~~~~-~l~~----h~~~v~~l~~spdg~~l~s~s~d-------------------g~v~vWd 955 (1015)
...++.|.+. .+.+. .+.. +......+.|.|||.+.++-+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 3333435432 11222 2322 12347789999999877765521 3344455
Q ss_pred ccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE
Q 001776 956 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1015)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1015)
.++++.. . ...+. .....++|+++|+++++
T Consensus 171 pdg~~~e---~--~a~G~----rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKLR---V--VAHGF----QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeEE---E--EecCc----CCCccceECCCCCEEEE
Confidence 5543311 1 12333 23568999999998877
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.19 Score=48.50 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=66.1
Q ss_pred CCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccE-EEEccCCCEEEEEc-CC
Q 001776 787 SGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC-FALSKNDSYVMSAS-GG 864 (1015)
Q Consensus 787 dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~-l~~s~dg~~la~~s-dg 864 (1015)
-+..+++|+.+|.+.+|++.... ........ -...|.+ +.--.++.+..++. ||
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g---------------------~~~d~~~s---~~e~i~~~Ip~~~~~~~~c~~~~dg 124 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEG---------------------AHSDRVCS---GEESIDLGIPNGRDSSLGCVGAQDG 124 (238)
T ss_pred cCceEEeecccceEEEecCCccc---------------------hHHHhhhc---ccccceeccccccccceeEEeccCC
Confidence 34568999999999999764211 00000000 1112222 22223455666666 99
Q ss_pred eEEEEeCCCCceeEEeCCCC-CCeeEEEEcCCCCcEEEEE--EcCCeEEEEEccc
Q 001776 865 KISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIG--MEDSSIQIYNVRV 916 (1015)
Q Consensus 865 ~i~iwd~~~~~~~~~l~~~~-~~i~~l~~sp~d~~~la~g--~~dg~v~vwd~~~ 916 (1015)
.|+.|++.-.+.+.....|. .++.....+. .+++++.+ +.|..++.|+++.
T Consensus 125 ~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 125 RIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 99999999888888877777 5555555555 56677777 7777788887764
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.07 E-value=8 Score=39.63 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=121.9
Q ss_pred ceeEEEEecCCCceEEEEEeCCCeEEEEEcC------CC-ceEEEeeC-----CCCCEEEEeecccCC------c----c
Q 001776 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV------TG-TKQYIFEG-----HESPVYSICPHHKEN------I----Q 522 (1015)
Q Consensus 465 ~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~------~~-~~~~~~~~-----h~~~v~~i~~~~~~~------~----~ 522 (1015)
.-+.|+++|.+. +-++....+...+||.. .. ..+.++.. .....+.+.|+.... + .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 357899999987 77888888899999975 12 22334332 123466666653321 1 2
Q ss_pred EEEEEeCCCeEEEEeCCCCCc-----eeeecC--CCCceEEEEECC--CCCEEEEEeeCCCCCceEEEEeCCCCeeeE--
Q 001776 523 FIFSTATDGKIKAWLYDNLGS-----RVDYDA--PGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESEGAVKR-- 591 (1015)
Q Consensus 523 ~l~s~~~dg~i~vwd~~~~~~-----~~~~~~--~~~~i~~~~~s~--~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~-- 591 (1015)
.++.+++||+|.-|...-... ...+.. ...-...+++.. .+.+|+.+-. ..++|.++|-.-.....
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 468889999999998533222 122221 122344556553 3567776643 24568888854322210
Q ss_pred EeeCC--C-C-CC--eEE------EE---EeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcC----
Q 001776 592 TYHGL--G-K-RS--VGV------VQ---FDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK---- 652 (1015)
Q Consensus 592 ~~~~~--~-~-~~--i~~------v~---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 652 (1015)
.+... . . .+ |.. +. -.++++.=+.+..-|.|-+||+ .|.+++.+...+....-+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01100 0 0 00 000 11 1122222223334578999997 578888886555556667888766
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCceeeeeecC
Q 001776 653 --EGILLAVSTNDNGIKILANADGIRLLRTVES 683 (1015)
Q Consensus 653 --~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 683 (1015)
.|.+|+---.||+|..||..++ +.+-.+..
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~ 289 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD 289 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence 4667776668999999999988 44444443
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=5.7 Score=43.75 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=88.4
Q ss_pred CccEEEEccCCCEEEEEcCCeEEE-EeCCCCce--eEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccce---
Q 001776 845 AVPCFALSKNDSYVMSASGGKISL-FNMMTFKT--MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE--- 918 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~sdg~i~i-wd~~~~~~--~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~--- 918 (1015)
....+..++||.+++++..|.+.. || .++. ...-......++.+.|.+ ++.+++++ .+|.+.. ....++
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred ceeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEEE-ecCCCCccc
Confidence 345567889999999999776443 43 2322 111122345689999998 78777655 5665543 334443
Q ss_pred --EEEEEcCc--cCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE
Q 001776 919 --VKTKLKGH--QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1015)
Q Consensus 919 --~~~~l~~h--~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1015)
....+... ...+.++.|.+++..++ ++.+|.+.... +.|+. +.......+.. .....+.|.++++.+++
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~t--W~~~~~~~~~~---~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKS--WKRDKGADNIA---ANLYSVKFFDDKKGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcc--eeEccccCCCC---cceeEEEEcCCCceEEE
Confidence 22332221 23488999998877655 55677665554 33331 11111111111 44679999999999999
Q ss_pred EeCCeEEEE
Q 001776 995 VHETQIAIY 1003 (1015)
Q Consensus 995 ~~d~~i~vw 1003 (1015)
|.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 999987765
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=93.72 E-value=12 Score=40.42 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=41.8
Q ss_pred CCCCccEEEEcc-------CCCEEEEEc-CCeEEEEeCCCCceeE---E-eCCCCCCeeEEEEcCCCCcEEEEEEcCCeE
Q 001776 842 PEDAVPCFALSK-------NDSYVMSAS-GGKISLFNMMTFKTMT---T-FMPPPPAATFLAFHPQDNNIIAIGMEDSSI 909 (1015)
Q Consensus 842 ~~~~v~~l~~s~-------dg~~la~~s-dg~i~iwd~~~~~~~~---~-l~~~~~~i~~l~~sp~d~~~la~g~~dg~v 909 (1015)
+...+..+.|-. .|++++..- .+.|....++....+. . +......+..+++.| ||.+.++-+.+|.|
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGALYVSDDSDGKI 329 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEEEEEE-TTTTE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeEEEEECCCCeE
Confidence 345566666653 455666665 6778888876443222 2 333444899999999 89888887778877
Q ss_pred E
Q 001776 910 Q 910 (1015)
Q Consensus 910 ~ 910 (1015)
+
T Consensus 330 y 330 (331)
T PF07995_consen 330 Y 330 (331)
T ss_dssp E
T ss_pred e
Confidence 5
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.2 Score=48.68 Aligned_cols=195 Identities=10% Similarity=-0.002 Sum_probs=88.9
Q ss_pred cCCCEEEEEECCC------eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC-----CeEEEEEcCC
Q 001776 428 PDGTLFGVAYSKH------IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED-----RVIKVWDAVT 496 (1015)
Q Consensus 428 pdg~~las~~~dg------~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d-----g~v~vwd~~~ 496 (1015)
.++..++.||.++ .+..||..+++-.. ...+.........+. -++. +++.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 4566777776542 46778877654321 111111111122222 2455 56667655 3577788776
Q ss_pred CceEEE--eeCCCCCEEEEeecccCCccEEEEEeCC------CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEE
Q 001776 497 GTKQYI--FEGHESPVYSICPHHKENIQFIFSTATD------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFS 568 (1015)
Q Consensus 497 ~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 568 (1015)
++.... +....... +++. -++.+.+.|+.+ +.+..||..+..-..............+...+++.++.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~---~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN---VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE---ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 543321 11111111 1121 123566666632 35778887654322111111111111122235556666
Q ss_pred EeeCCCC----CceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCCce
Q 001776 569 CGTNKEG----ESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNVNL 632 (1015)
Q Consensus 569 ~~~d~~~----~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~ 632 (1015)
||.+... -..+.+||..+.+....-.......-..++. -++..++.||.+ ..+.+||..+.+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 6543221 2348889988776543221111101111222 256666666643 4677888776543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.57 E-value=9.9 Score=39.01 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=51.6
Q ss_pred CCeEEEEeCCCCceeEEeC--CCCCCeeEEEEcC-----CCCcEEEEEEcCCeEEEEEcccceEEEEEcCccC------C
Q 001776 863 GGKISLFNMMTFKTMTTFM--PPPPAATFLAFHP-----QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK------R 929 (1015)
Q Consensus 863 dg~i~iwd~~~~~~~~~l~--~~~~~i~~l~~sp-----~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~------~ 929 (1015)
-|.|-+||. .|..++++. +.-..-..|+..| -.+.+|+--..||+|..||..+|+.+..+....+ .
T Consensus 221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 468999997 567777774 2233456666644 2567888777899999999999998888875433 2
Q ss_pred eEEEEEeC
Q 001776 930 ITGLAFSN 937 (1015)
Q Consensus 930 v~~l~~sp 937 (1015)
.+.|+|-.
T Consensus 300 LWgL~fGn 307 (336)
T TIGR03118 300 LWSLTFGN 307 (336)
T ss_pred eEEeeeCC
Confidence 45566643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.51 E-value=9.1 Score=38.38 Aligned_cols=173 Identities=7% Similarity=0.059 Sum_probs=93.6
Q ss_pred CCCCCccccccCCCCCCCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeEEeCCCC-CCeeEEEEcCCCCcEEEEEE
Q 001776 826 QPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP-PAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 826 d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~-~~i~~l~~sp~d~~~la~g~ 904 (1015)
|.++.+.....++............|.++|.+-.++..|.---.|..+ ..+.++.... ..-..|+..| +|..-++.-
T Consensus 130 dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atp-dGsvwyasl 207 (353)
T COG4257 130 DPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQGGGPYGICATP-DGSVWYASL 207 (353)
T ss_pred cCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCCCCCCcceEECC-CCcEEEEec
Confidence 444444444444443456677888999999988887532111111111 1222333222 2356788888 787777766
Q ss_pred cCCeEEEEEcccce--EEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceE
Q 001776 905 EDSSIQIYNVRVDE--VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982 (1015)
Q Consensus 905 ~dg~v~vwd~~~~~--~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 982 (1015)
.+..|-..|-.++. .+..-.+....-..+--+|.|+..+|....+.+..+|-.... +....++... ..-.+
T Consensus 208 agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s---W~eypLPgs~----arpys 280 (353)
T COG4257 208 AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS---WIEYPLPGSK----ARPYS 280 (353)
T ss_pred cccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc---ceeeeCCCCC----CCcce
Confidence 67677777766652 222222212234556667889988988888888888876644 2233332221 11334
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCC
Q 001776 983 VQFHLDQTHLLA-VHETQIAIYEAPK 1007 (1015)
Q Consensus 983 l~fs~dg~~l~~-~~d~~i~vwd~~~ 1007 (1015)
+.....|+.-++ ..-|.|.-+|-++
T Consensus 281 ~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 281 MRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeeccCCcEEeeccccCceeecCccc
Confidence 555555554444 2344444444443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.066 Score=61.17 Aligned_cols=109 Identities=20% Similarity=0.346 Sum_probs=67.3
Q ss_pred ccCCCEEEEEc-CCeEEEEeCCCCceeEEeCCCCCCeeEEE-----------EcCCCCcEEEEEEcCCeEEEEEcc----
Q 001776 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLA-----------FHPQDNNIIAIGMEDSSIQIYNVR---- 915 (1015)
Q Consensus 852 s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~l~-----------~sp~d~~~la~g~~dg~v~vwd~~---- 915 (1015)
-++.-++.++. ++.+++.++.+... ..+++|...++.++ .|| ||..+|.++.||.++.|-+.
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeecc
Confidence 34556666666 68888877655332 34555766554443 688 99999999999988888764
Q ss_pred -cceEEEEEcCccCC-eEEEEEeCC-------C--CEEEEEe-CCCcEEEEEccCcccc
Q 001776 916 -VDEVKTKLKGHQKR-ITGLAFSNT-------L--NVLVSSG-ADSQLCVWSTDGWEKQ 962 (1015)
Q Consensus 916 -~~~~~~~l~~h~~~-v~~l~~spd-------g--~~l~s~s-~dg~v~vWd~~~~~~~ 962 (1015)
.-+|+...+.|.+. -.|..+... + .++++++ .+..+++|.-..++|.
T Consensus 270 ~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 22455566667633 233333321 1 2344444 3456899998877754
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=9.2 Score=37.32 Aligned_cols=138 Identities=11% Similarity=0.066 Sum_probs=73.7
Q ss_pred cCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC--------CCEEEEeecccCCccEEEEEeCCCeEE
Q 001776 463 VGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE--------SPVYSICPHHKENIQFIFSTATDGKIK 534 (1015)
Q Consensus 463 ~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~--------~~v~~i~~~~~~~~~~l~s~~~dg~i~ 534 (1015)
....+.-..+|+|+ +++-.-.|-.- ......|..-.-+.+|. .--+.++|+.+.. .+.++-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAK-KFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccccCc-EEEEEccCceEEe
Confidence 34566677789998 43322222111 11111222222223332 2224456653332 3445556677787
Q ss_pred EEeCC--CCC-----ceeeecC---CCC-ceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEE
Q 001776 535 AWLYD--NLG-----SRVDYDA---PGH-SSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGV 603 (1015)
Q Consensus 535 vwd~~--~~~-----~~~~~~~---~~~-~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~ 603 (1015)
-||.+ ++. .+..+.. ..+ .--.++...+|...+++-. .++|...|+.+|+.+.++..... .+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qits 258 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QITS 258 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceEE
Confidence 78743 221 1221111 011 1224555667776666543 33699999999999999988766 8999
Q ss_pred EEEeCC
Q 001776 604 VQFDTT 609 (1015)
Q Consensus 604 v~~~~~ 609 (1015)
+||...
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 999654
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.90 E-value=10 Score=42.21 Aligned_cols=278 Identities=17% Similarity=0.105 Sum_probs=137.4
Q ss_pred EeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCC
Q 001776 352 TLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGT 431 (1015)
Q Consensus 352 ~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (1015)
.+.....|.++.+.-.|. +-+|+.|| +..||..+++.+.... .....+|..+.-+-.|+
T Consensus 160 ~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~ 218 (671)
T COG3292 160 PLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR 218 (671)
T ss_pred ccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc
Confidence 344677899999999997 45677777 6777877777655310 11124566666555554
Q ss_pred EEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEE-EeeCCC--C
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY-IFEGHE--S 508 (1015)
Q Consensus 432 ~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~-~~~~h~--~ 508 (1015)
|.+|+.+| |.+.+..+.+... . -..-..+.|..+.-..+|. +-.|+..|-.+. ....+.... ..+.|. .
T Consensus 219 -LWVGTdqG-v~~~e~~G~~~sn-~-~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S 290 (671)
T COG3292 219 -LWVGTDQG-VYLQEAEGWRASN-W-GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVS 290 (671)
T ss_pred -EEEEeccc-eEEEchhhccccc-c-CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCccc
Confidence 56677777 7777766532111 0 0111334455554444554 555666554332 222222222 222222 2
Q ss_pred CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECC--CCCEEEEEeeCCCCCceEEEEeCCC
Q 001776 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSA--DGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
.|.++.. +.+| -+-+++.+|.+++-+-+-..........+..+...+..| .+..+-... ..+.+.+-+..+
T Consensus 291 ~vnsL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~st 363 (671)
T COG3292 291 TVNSLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGST 363 (671)
T ss_pred cccceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCC
Confidence 3344433 3443 466677766655433221010111111111111122222 111111110 011244555566
Q ss_pred CeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCC-CceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCc
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 665 (1015)
|..++.........|+.+++..++ .+-.++...-+..|+..+ +.......+ ...+.|..+.=.|+++ |..|+.+|.
T Consensus 364 G~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~ag-l~ss~V~aived~dns-LWIGTs~Gl 440 (671)
T COG3292 364 GELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAG-LPSSEVSAIVEDPDNS-LWIGTSGGL 440 (671)
T ss_pred CcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccC-CcccceeeeeecCCCC-EEEeccCCe
Confidence 766666555554467777777644 445555443355566555 323322222 2245677777788887 667888876
Q ss_pred EEE
Q 001776 666 IKI 668 (1015)
Q Consensus 666 i~i 668 (1015)
++.
T Consensus 441 vk~ 443 (671)
T COG3292 441 VKR 443 (671)
T ss_pred Eec
Confidence 644
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.64 Score=49.22 Aligned_cols=156 Identities=14% Similarity=0.103 Sum_probs=97.4
Q ss_pred CCCCccEEEEccCCCEEEEEcCCeEEEEeCCCCceeE-Ee-CCCCC----Cee-EEEEcCCCCcEEEEEEcCCeEEEE-E
Q 001776 842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT-TF-MPPPP----AAT-FLAFHPQDNNIIAIGMEDSSIQIY-N 913 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~-~l-~~~~~----~i~-~l~~sp~d~~~la~g~~dg~v~vw-d 913 (1015)
....+..+-..|||+++..-+...+.++++.+..... .+ ....+ .|+ ++..-. +|.-+.++..||.|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567888899999999999888889999886543221 11 11111 122 222233 67778889999988877 4
Q ss_pred cccc-e----EEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccC
Q 001776 914 VRVD-E----VKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLD 988 (1015)
Q Consensus 914 ~~~~-~----~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d 988 (1015)
+..+ . .++.++-...++..+.--...+-+++-+..|++.++.....+.. .+.... .++..++|||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 1 12222222233333332233456788888999888775553321 111111 23568999999
Q ss_pred CCEEEEEeCCeEEEEEcCC
Q 001776 989 QTHLLAVHETQIAIYEAPK 1007 (1015)
Q Consensus 989 g~~l~~~~d~~i~vwd~~~ 1007 (1015)
+.+|++-..|.++++.+++
T Consensus 369 ~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred cchheeecCCceEEEEecC
Confidence 9999998889999998865
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.4 Score=50.69 Aligned_cols=151 Identities=10% Similarity=0.105 Sum_probs=87.0
Q ss_pred ccEEEEEEcCCCcEEEEec--cCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccC
Q 001776 777 MRVSRLIYTNSGLAILALA--SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKN 854 (1015)
Q Consensus 777 ~~i~~l~~s~dg~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~d 854 (1015)
-.|..++..+|+...++.. .+-.|..||+..-... ...+..++...-.+........++.|.|.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s--------------~~~~~~pl~~s~ts~ek~vf~~~~~wnP~ 166 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSES--------------RYETTVPLKNSATSFEKPVFQLKNVWNPL 166 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhh--------------hhhhccccccccchhccccccccccccCC
Confidence 4456667777766544433 3447777776532110 00111111111111113344566777765
Q ss_pred CC--EEEEEcCCeEEEEeCCCCcee-EEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcC----cc
Q 001776 855 DS--YVMSASGGKISLFNMMTFKTM-TTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKG----HQ 927 (1015)
Q Consensus 855 g~--~la~~sdg~i~iwd~~~~~~~-~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~----h~ 927 (1015)
-. .++...|+.|++..+.-.... ..+. .....++++|+| .|+.++.|...|++.-|... ++....+.+ ..
T Consensus 167 vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~ 243 (1405)
T KOG3630|consen 167 VPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEEN 243 (1405)
T ss_pred ccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCC
Confidence 33 233334888888876432222 2222 345689999999 99999999999999988744 444444332 24
Q ss_pred CCeEEEEEeCCCCEEEE
Q 001776 928 KRITGLAFSNTLNVLVS 944 (1015)
Q Consensus 928 ~~v~~l~~spdg~~l~s 944 (1015)
..|.+|+|.....+|++
T Consensus 244 yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 244 YRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cceeEEEEecceeEEEE
Confidence 67999999877777765
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.17 Score=57.95 Aligned_cols=131 Identities=13% Similarity=0.164 Sum_probs=79.0
Q ss_pred cCCCeeEEEeccCC-CeEEEEEecCCeEEEEEcC--CcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEcc---
Q 001776 355 QGSAVKSMDFHPVQ-QILLVVGTNMGDVMLWEVG--SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP--- 428 (1015)
Q Consensus 355 h~~~V~~~~~sp~g-~~lla~g~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--- 428 (1015)
..+.|-.++|-... ..++ ..-|...|||++ .|+......+++ .......+.-|.|.|
T Consensus 131 f~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred CCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeeccccc
Confidence 45666677764321 1111 223678899875 344333222221 122223444455554
Q ss_pred CCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEE-----------EecCCCceEEEEEeCCCeEEEEEcC--
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA-----------FSYPNKQLSVVTCGEDRVIKVWDAV-- 495 (1015)
Q Consensus 429 dg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~-----------~s~~~~~~~l~s~s~dg~v~vwd~~-- 495 (1015)
+..++..+-.++.|++..+++... . .+.+|...++.++ .||||+ .+++++.||.++.|.+.
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeee
Confidence 677888888888888877765432 1 3456877766655 489999 89999999998888754
Q ss_pred ---CCceEEEeeCCCC
Q 001776 496 ---TGTKQYIFEGHES 508 (1015)
Q Consensus 496 ---~~~~~~~~~~h~~ 508 (1015)
..+|++..+.|++
T Consensus 268 g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 268 GKIVHRCLHEWKPHDK 283 (1283)
T ss_pred ccccHhhhhccCCCCC
Confidence 3355667777763
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.64 E-value=2.4 Score=45.28 Aligned_cols=124 Identities=14% Similarity=0.151 Sum_probs=82.2
Q ss_pred ccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEE
Q 001776 354 NQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLF 433 (1015)
Q Consensus 354 ~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l 433 (1015)
...++|.++.||+|.+ ++|+--.|.+|.+++....+....... ..+..+..|....|+.+ .-+
T Consensus 64 ~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~ 126 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEI 126 (657)
T ss_pred cCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeE
Confidence 3567999999999999 889999999999999854432221000 02234456899999876 667
Q ss_pred EEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 434 as~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
|.....| +.+|-+...+ +.....+.|+..|..-.|.++..-.+++|+-..+++.=+-++++
T Consensus 127 A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 7777777 7777765432 22224567888999999999988433333324444444444444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.29 E-value=18 Score=36.47 Aligned_cols=233 Identities=11% Similarity=0.046 Sum_probs=138.3
Q ss_pred CCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCc
Q 001776 419 ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT 498 (1015)
Q Consensus 419 ~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~ 498 (1015)
..-..++-+|||..-.++...+.|--.|..+|+... .--+....-..+..-|||. .-++-+.. -|.-.|-++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~---ypLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET---YPLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEE---EecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence 455678888999988888888888888888887443 1123333445667778887 34443332 45555555544
Q ss_pred eEE-Ee--eCCCCCEEEEeecccCCccEEEEEeCC---------CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEE
Q 001776 499 KQY-IF--EGHESPVYSICPHHKENIQFIFSTATD---------GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566 (1015)
Q Consensus 499 ~~~-~~--~~h~~~v~~i~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 566 (1015)
... .+ +.-........| ++.|++-+++... +.|++|+.. .+..-+.++..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vf--D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVF--DPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceee--CCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 322 22 222345555666 4455666666421 224444322 23456788999999987
Q ss_pred EEEeeCCCCCceEEEEeCCCCeeeEEeeCCC-CCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCc
Q 001776 567 FSCGTNKEGESYLVEWNESEGAVKRTYHGLG-KRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645 (1015)
Q Consensus 567 ~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~-~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v 645 (1015)
++.-. .+.|...|..++.....-.... ......+..+|.|..-++....+.++.+|..... -..+...+....-
T Consensus 204 yasla----gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arp 278 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARP 278 (353)
T ss_pred EEecc----ccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCc
Confidence 76433 2247777776663222111111 1134556677888888887788899999887655 4444444444555
Q ss_pred ceEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 001776 646 PCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 646 ~~v~~s~~~~~l~~~~~dg~i~iw~~~~~ 674 (1015)
.++.....++.-.+-...|.|.-+|.++.
T Consensus 279 ys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 279 YSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ceeeeccCCcEEeeccccCceeecCcccc
Confidence 67777666666555556667777776654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.27 E-value=5.3 Score=44.00 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=56.8
Q ss_pred CccEEEEccCCCEEEEEcCCeEEEE-eCCC-----Cc--ee-EEeCCC----CCCeeEEEEcCCCCcEEEEEEcC-----
Q 001776 845 AVPCFALSKNDSYVMSASGGKISLF-NMMT-----FK--TM-TTFMPP----PPAATFLAFHPQDNNIIAIGMED----- 906 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~sdg~i~iw-d~~~-----~~--~~-~~l~~~----~~~i~~l~~sp~d~~~la~g~~d----- 906 (1015)
....+++.++| +++ ++...|..| |... ++ .+ ..+... ......++|.| ||.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 45778999998 444 443344434 5421 11 11 123221 23477899999 77766544411
Q ss_pred --------------CeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCC
Q 001776 907 --------------SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948 (1015)
Q Consensus 907 --------------g~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~d 948 (1015)
|.|.-++..+++......++. ....++|+|+|+++++-..+
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEccCC
Confidence 456666666555433334443 35689999999988764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.24 E-value=18 Score=38.09 Aligned_cols=166 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred eEEEEEcCCCceEEEeeC------CCCCEEEEeecccCC----ccEEEEEeCCCeEEEEeCCCCCceeeecCC-------
Q 001776 488 VIKVWDAVTGTKQYIFEG------HESPVYSICPHHKEN----IQFIFSTATDGKIKAWLYDNLGSRVDYDAP------- 550 (1015)
Q Consensus 488 ~v~vwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~------- 550 (1015)
.+.+||+.+++.++++.- ..+.+..+.+..... +...++=+..+.|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577888888888776642 234567777665332 223333344467889998876543322111
Q ss_pred ------------CCceEEEEECC---CCCEEEEEeeCCCCCceEEEEeCCCC-----e---------eeEEeeCCCCCCe
Q 001776 551 ------------GHSSTMMAYSA---DGARLFSCGTNKEGESYLVEWNESEG-----A---------VKRTYHGLGKRSV 601 (1015)
Q Consensus 551 ------------~~~i~~~~~s~---~~~~l~~~~~d~~~~~~i~iwd~~~~-----~---------~~~~~~~~~~~~i 601 (1015)
...+..++.+| ++++|+.....+ -.+|.+.+. . .+..+ +......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s 188 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS 188 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence 11356667755 677777665432 233333211 0 11121 2221245
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEeCCCCc---eeEEEecCCC-CCCcceEEEcC--CCCEEEE
Q 001776 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVN---LLASIDADGG-LQASPCIRFNK--EGILLAV 659 (1015)
Q Consensus 602 ~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~ 659 (1015)
..++++++|..+++--..+.|..|+..+.- ....+..... ...+..+.+.+ +|.+.+.
T Consensus 189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 668899998888888899999999987621 2222322211 34556777777 5544443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.23 E-value=27 Score=38.52 Aligned_cols=195 Identities=15% Similarity=0.059 Sum_probs=104.8
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCC-CCEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE-SPVY 511 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~-~~v~ 511 (1015)
+.++..+|.|.-.|..++..+....... ....+..-.+..+|+ ++.++.++.++..|..+|+.+....... ..+.
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 4444677777777777776443221111 112223333333776 8888999999999988999998877655 1111
Q ss_pred EEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCC---CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCe
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPG---HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGA 588 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~ 588 (1015)
.-.+. .+ ..++.++.++.+...|..++.......... ..+..-....+ ..++.+..+ . +..+.-.|..+|.
T Consensus 147 ~~~v~--~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~vy~~~~~-~-~~~~~a~~~~~G~ 220 (370)
T COG1520 147 SPPVV--GD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIAS-GTVYVGSDG-Y-DGILYALNAEDGT 220 (370)
T ss_pred cCcEE--cC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeec-ceEEEecCC-C-cceEEEEEccCCc
Confidence 11111 12 245555567888877777776655543322 11111111122 233333321 1 3357777887887
Q ss_pred eeEEeeCCCCCC---e--E-EE---EEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec
Q 001776 589 VKRTYHGLGKRS---V--G-VV---QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 589 ~~~~~~~~~~~~---i--~-~v---~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 638 (1015)
............ + . .+ ...- +..++.++.++.+...|..+++.+-....
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v-~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV-DGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE-CCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 665533221101 1 0 00 0111 12345666778899999999998887764
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.23 E-value=7.2 Score=42.45 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=91.1
Q ss_pred EEecCCCceEEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEeecccC------CccEEEEEeCCCeEEEEeCCCCCc
Q 001776 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------NIQFIFSTATDGKIKAWLYDNLGS 543 (1015)
Q Consensus 470 ~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~------~~~~l~s~~~dg~i~vwd~~~~~~ 543 (1015)
-.+.+...+.+..|+....++-.|++.|+.+.++.-|...| +.|.|.. +.+.| .|-.+..|.-.|.+..+.
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceE-EeecccceEEecccccCC
Confidence 33334444456677777889999999999999998877653 4444432 11233 444555555567665443
Q ss_pred eeeecCCC-----CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeC
Q 001776 544 RVDYDAPG-----HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGD 618 (1015)
Q Consensus 544 ~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~ 618 (1015)
........ ....+..-. ...++++++..|+ |++||--.-+....+.+..+ .|..+..+.+|.++++.+.
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGD----irLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGD----IRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATCK 623 (776)
T ss_pred ceeeeeehhccccccccccccc-cCceEEEecCCCc----eeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEeec
Confidence 22211111 122333222 3457888876554 99999654444455555555 7888999999999988875
Q ss_pred CCcEEEEeCC
Q 001776 619 EFMIKFWDMD 628 (1015)
Q Consensus 619 dg~i~vwd~~ 628 (1015)
..+.+-|+.
T Consensus 624 -~yllL~d~~ 632 (776)
T COG5167 624 -NYLLLTDVP 632 (776)
T ss_pred -ceEEEEecc
Confidence 356666653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.01 E-value=22 Score=41.17 Aligned_cols=182 Identities=10% Similarity=0.076 Sum_probs=84.9
Q ss_pred ccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeee-eEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEE
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH-LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 415 ~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~-~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd 493 (1015)
..|. .+-.+.|+.+..+ ++...+|+++||++.... +... .-+......|..+.|..+|= +.-..+|.+.+-+
T Consensus 81 w~~~-~lI~mgWs~~eeL-I~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~ 153 (829)
T KOG2280|consen 81 WKHG-ELIGMGWSDDEEL-ICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILIN 153 (829)
T ss_pred hcCC-CeeeecccCCceE-EEEeccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEc
Confidence 3444 8889999977655 456799999999986532 2210 01122334566666666553 3333344444433
Q ss_pred cCCCceEEEeeC---CCCCEEEEee-cccCCccEEEEEe-CCCeEEEEeCCCCC-ceeeecCCCCceEEEEECCCCCEEE
Q 001776 494 AVTGTKQYIFEG---HESPVYSICP-HHKENIQFIFSTA-TDGKIKAWLYDNLG-SRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 494 ~~~~~~~~~~~~---h~~~v~~i~~-~~~~~~~~l~s~~-~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
-.....++++.. ...+-.+... .+......++-.. ..+ ..++-..... ....+......+..+..||+.++|+
T Consensus 154 ~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~la 232 (829)
T KOG2280|consen 154 GVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLA 232 (829)
T ss_pred CCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEE
Confidence 111112222221 1111111111 1111111111111 000 0111111111 1122222335677889999999998
Q ss_pred EEeeCCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeC
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~ 608 (1015)
.-...| .|++-+....+....+.......-..++|..
T Consensus 233 Lyt~~G----~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 233 LYTETG----KIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEecCC----cEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 876533 5777777666666665533322222444543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.98 E-value=18 Score=39.03 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=94.5
Q ss_pred CCccEEEEEEcCCCcEEEEeccCcE------EEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccE
Q 001776 775 TAMRVSRLIYTNSGLAILALASNAV------HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPC 848 (1015)
Q Consensus 775 ~~~~i~~l~~s~dg~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~ 848 (1015)
.-+.+..+.+.+++..+++.+.+|. +..+++..... ..+.......+.+-+.. |... .. ......+
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~----~~--~~~D~Eg 89 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPF----PK--NGLDPEG 89 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcC----Cc--CCCChhH
Confidence 3466788999966556666676666 54444443111 01111111111222221 2111 10 2235678
Q ss_pred EEEccCCCEEEEEc-C------CeEEEEeCCCCceeEEeC---------------CCCCCeeEEEEcCCCCcEEEEEEc-
Q 001776 849 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMTTFM---------------PPPPAATFLAFHPQDNNIIAIGME- 905 (1015)
Q Consensus 849 l~~s~dg~~la~~s-d------g~i~iwd~~~~~~~~~l~---------------~~~~~i~~l~~sp~d~~~la~g~~- 905 (1015)
+++.++|.++++.- + ..|..++.. |+....+. ..+...-+|+++| ||+.|.++.+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~ 167 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES 167 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence 88888888887765 6 678888865 66555442 1234578999999 8886665543
Q ss_pred ----CC--e-------EEEE--Eccc-ceE----EEEEcC-----ccCCeEEEEEeCCCCEEEEE-----eCCCcEEEEE
Q 001776 906 ----DS--S-------IQIY--NVRV-DEV----KTKLKG-----HQKRITGLAFSNTLNVLVSS-----GADSQLCVWS 955 (1015)
Q Consensus 906 ----dg--~-------v~vw--d~~~-~~~----~~~l~~-----h~~~v~~l~~spdg~~l~s~-----s~dg~v~vWd 955 (1015)
|+ . ++++ |..+ ++. ...+.. ....|+.+.+-+++++|+.= +....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 4454 4443 322 233332 34678899999999987742 1234455554
Q ss_pred cc
Q 001776 956 TD 957 (1015)
Q Consensus 956 ~~ 957 (1015)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 44
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.8 Score=31.34 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCEEEEEEccC-C--CEEEEEECCCeEEEEEccCC
Q 001776 419 ASVNRVMWSPD-G--TLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 419 ~~V~~l~~spd-g--~~las~~~dg~v~iwd~~~~ 450 (1015)
++|.++.|||+ + ++|+.+-..|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 47899999984 4 58998888899999999863
|
It contains a characteristic DLL sequence motif. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.88 E-value=11 Score=43.36 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=69.4
Q ss_pred cEEEEEeCC--CeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeCCCCC
Q 001776 522 QFIFSTATD--GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599 (1015)
Q Consensus 522 ~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~ 599 (1015)
.+.+.|+.+ ..+..||..+..-...-.............-+|+..+.||.++. ...+..||..+.+....-.-...
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~- 397 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYP- 397 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCc-
Confidence 566677654 34777776543221111111111111222335666666665432 34577899887665432211111
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC-----CcEEEEEccCC
Q 001776 600 SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND-----NGIKILANADG 674 (1015)
Q Consensus 600 ~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iw~~~~~ 674 (1015)
.....+..-++...+.| |.+.+||..+.+....-......... +++ .-+|+..+.|+.+ ..+..||..++
T Consensus 398 r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 398 HYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 11111222345445555 35778998776554332221111111 222 2357777777754 35677777665
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.87 E-value=2.6 Score=51.41 Aligned_cols=168 Identities=13% Similarity=0.210 Sum_probs=100.5
Q ss_pred CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEE
Q 001776 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425 (1015)
Q Consensus 346 ~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 425 (1015)
|...+..+.|...=+.+-+-|.=.+.-+ +.|+.+.+|+.+++..... +.+-+..|..|.
T Consensus 68 P~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V~ 126 (1311)
T KOG1900|consen 68 PDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKVG 126 (1311)
T ss_pred CHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheeee
Confidence 3455555666666667777776543333 5789999999998654432 344455555554
Q ss_pred E--------ccCCCEEEEEECCCeEEEEEccCCceeee------eeEEecccCceeEEEEecCCCceEEEEEeCCCeEEE
Q 001776 426 W--------SPDGTLFGVAYSKHIVHLYTYHGGDELRN------HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 426 ~--------spdg~~las~~~dg~v~iwd~~~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~v 491 (1015)
. -|.=+++++-..--.|.++-+.-.+.... ...+......|.|+....+|+ +.-+|.|| .+
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg--~l 201 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG--NL 201 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC--CE
Confidence 3 33344555444445566665542221111 112223355788999888887 55566666 44
Q ss_pred EEc----CCC---c-e----------------EEEee-CCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCC
Q 001776 492 WDA----VTG---T-K----------------QYIFE-GHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (1015)
Q Consensus 492 wd~----~~~---~-~----------------~~~~~-~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 541 (1015)
|.+ ..| + + +..+. .+..+|..+.+..+. ..+.+-+..|+|.+||+...
T Consensus 202 yEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 202 YELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred EEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccCC
Confidence 443 111 1 1 11223 567799999886554 68899999999999999763
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.74 E-value=5 Score=46.83 Aligned_cols=145 Identities=12% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCEEEEEcCCeEEEEeCCCCceeE------EeCC----------------CCCCeeEEEEcCC-CCcEEEEEEcCCeEEE
Q 001776 855 DSYVMSASGGKISLFNMMTFKTMT------TFMP----------------PPPAATFLAFHPQ-DNNIIAIGMEDSSIQI 911 (1015)
Q Consensus 855 g~~la~~sdg~i~iwd~~~~~~~~------~l~~----------------~~~~i~~l~~sp~-d~~~la~g~~dg~v~v 911 (1015)
..++.++..+.|.||+.+...... .+.. ....|+.|....- +..+|+.+.+||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 778888889999999986432211 1100 1112444443321 4568889999999999
Q ss_pred EEcccc-----------e---------EEEEEcCccCCeEEEEEe--CCCCEEEEEeCCCcEEEEEccCcccccceEEEe
Q 001776 912 YNVRVD-----------E---------VKTKLKGHQKRITGLAFS--NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTI 969 (1015)
Q Consensus 912 wd~~~~-----------~---------~~~~l~~h~~~v~~l~~s--pdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~ 969 (1015)
|.+++- + +...+. -...+++++++ ...+++|+++....|-||-....... ....
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r---~~~~ 204 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER---FYHV 204 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc---cccc
Confidence 976321 0 112222 23468999998 77888898888888888876653211 1111
Q ss_pred cCCCccccCCceEEEEccCC---C---EEEE-EeCCeEEEEEc
Q 001776 970 PNGRTASALADTRVQFHLDQ---T---HLLA-VHETQIAIYEA 1005 (1015)
Q Consensus 970 ~~~~~~~~~~v~~l~fs~dg---~---~l~~-~~d~~i~vwd~ 1005 (1015)
.. ..+...|.+|+|-++. . +|++ .-.|.+.+|++
T Consensus 205 ~s--~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PS--HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cc--cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11 1133669999998764 2 4554 47888888877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=90.74 E-value=28 Score=37.75 Aligned_cols=197 Identities=12% Similarity=0.129 Sum_probs=108.4
Q ss_pred CCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEE----ccCCCE--EE
Q 001776 786 NSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFAL----SKNDSY--VM 859 (1015)
Q Consensus 786 ~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~----s~dg~~--la 859 (1015)
|...+++....++-+.+||+.. +.+... . .+++..+.+ .-+|+. ||
T Consensus 66 p~kSlIigTdK~~GL~VYdL~G-------k~lq~~-------~--------------~Gr~NNVDvrygf~l~g~~vDla 117 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDG-------KELQSL-------P--------------VGRPNNVDVRYGFPLNGKTVDLA 117 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS--------EEEEE----------------------SS-EEEEEEEEEEEETTEEEEEE
T ss_pred cccceEEEEeCCCCEEEEcCCC-------cEEEee-------c--------------CCCcceeeeecceecCCceEEEE
Confidence 4556777788888899998753 322211 1 112222221 123443 45
Q ss_pred EEc--C---CeEEEEeCC--CCceeEEeCC-------CCCCeeEEEE--cCCCCc-EEEEEEcCCeEEEEEcc---cc--
Q 001776 860 SAS--G---GKISLFNMM--TFKTMTTFMP-------PPPAATFLAF--HPQDNN-IIAIGMEDSSIQIYNVR---VD-- 917 (1015)
Q Consensus 860 ~~s--d---g~i~iwd~~--~~~~~~~l~~-------~~~~i~~l~~--sp~d~~-~la~g~~dg~v~vwd~~---~~-- 917 (1015)
.++ + .+|++|.+. ++. +..+.. ....+..+|+ ++.+|. ++++...+|.+..|.+. .+
T Consensus 118 vas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v 196 (381)
T PF02333_consen 118 VASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKV 196 (381)
T ss_dssp EEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSE
T ss_pred EEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcE
Confidence 554 2 469999775 333 333321 1123566666 443454 66677889999888875 22
Q ss_pred --eEEEEEcCccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEc--cCC-CEE
Q 001776 918 --EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH--LDQ-THL 992 (1015)
Q Consensus 918 --~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs--~dg-~~l 992 (1015)
+.++.|... ..+-.|.......+|+.+-+|.-|.-|+.+.........+....+.. ...-|..|++- .+| .||
T Consensus 197 ~~~lVR~f~~~-sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-l~aDvEGlaly~~~~g~gYL 274 (381)
T PF02333_consen 197 SATLVREFKVG-SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-LVADVEGLALYYGSDGKGYL 274 (381)
T ss_dssp EEEEEEEEE-S-S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-B-S-EEEEEEEE-CCC-EEE
T ss_pred eeEEEEEecCC-CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-cccCccceEEEecCCCCeEE
Confidence 567777753 46888999888889999999976766666533222223343333321 12567788874 344 466
Q ss_pred EEE--eCCeEEEEEcCC-ceEecc
Q 001776 993 LAV--HETQIAIYEAPK-LECLKQ 1013 (1015)
Q Consensus 993 ~~~--~d~~i~vwd~~~-g~~l~~ 1013 (1015)
+++ .+++..||+.+. .+.+..
T Consensus 275 ivSsQG~~sf~Vy~r~~~~~~~g~ 298 (381)
T PF02333_consen 275 IVSSQGDNSFAVYDREGPNAYVGS 298 (381)
T ss_dssp EEEEGGGTEEEEEESSTT--EEEE
T ss_pred EEEcCCCCeEEEEecCCCCcccce
Confidence 664 788899999864 454444
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.1 Score=44.78 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=56.0
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccCcccccce--EEEecCCCc----cccCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001776 935 FSNTLNVLVSSGADSQLCVWSTDGWEKQASK--FLTIPNGRT----ASALADTRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1015)
Q Consensus 935 ~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~--~~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g 1008 (1015)
+..++++|++.+.+|.+++||+.+++..-.. ...+..... .....|..+.++.+|.-|++-++|..+.|+.+=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4557899999999999999999997754222 011111100 2236789999999999888877899999998766
Q ss_pred eEec
Q 001776 1009 ECLK 1012 (1015)
Q Consensus 1009 ~~l~ 1012 (1015)
.++.
T Consensus 98 ~W~~ 101 (219)
T PF07569_consen 98 CWIR 101 (219)
T ss_pred eeEE
Confidence 5544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.70 E-value=16 Score=39.28 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=91.7
Q ss_pred CCCCccEEEEcc-CCCEEEEEcCCe------EEEEeCCC--C--ceeE-----EeCCCCC--------CeeEEEEcCCCC
Q 001776 842 PEDAVPCFALSK-NDSYVMSASGGK------ISLFNMMT--F--KTMT-----TFMPPPP--------AATFLAFHPQDN 897 (1015)
Q Consensus 842 ~~~~v~~l~~s~-dg~~la~~sdg~------i~iwd~~~--~--~~~~-----~l~~~~~--------~i~~l~~sp~d~ 897 (1015)
.-+..+.+.+.+ ++++++..+++. +..+++.. + ..+. .+....+ ..-+|++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678899984 566666665565 55555433 1 1111 1222221 234788866 78
Q ss_pred cEEEEEEcC------CeEEEEEcccceEEEEEc---------------CccCCeEEEEEeCCCCEEEEEeC-----CC--
Q 001776 898 NIIAIGMED------SSIQIYNVRVDEVKTKLK---------------GHQKRITGLAFSNTLNVLVSSGA-----DS-- 949 (1015)
Q Consensus 898 ~~la~g~~d------g~v~vwd~~~~~~~~~l~---------------~h~~~v~~l~~spdg~~l~s~s~-----dg-- 949 (1015)
.++++.=.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|+++.+ |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 777766556 678888866 65554441 12345778999999997666543 22
Q ss_pred c-------EEEEEccCc---ccccceEEEecCC-CccccCCceEEEEccCCCEEEE--E----eCCeEEEEEcC
Q 001776 950 Q-------LCVWSTDGW---EKQASKFLTIPNG-RTASALADTRVQFHLDQTHLLA--V----HETQIAIYEAP 1006 (1015)
Q Consensus 950 ~-------v~vWd~~~~---~~~~~~~~~~~~~-~~~~~~~v~~l~fs~dg~~l~~--~----~d~~i~vwd~~ 1006 (1015)
. ++++..... +....-.+....- .......|+.+.+-+|+++|+. . ....+++|.+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1 555554432 2222222222210 0002256899999999998888 3 23455666553
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.67 E-value=9.2 Score=43.86 Aligned_cols=185 Identities=8% Similarity=-0.098 Sum_probs=79.5
Q ss_pred CCCEEEEEECCC-----eEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCC--CeEEEEEcCCCceEE
Q 001776 429 DGTLFGVAYSKH-----IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTKQY 501 (1015)
Q Consensus 429 dg~~las~~~dg-----~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~d--g~v~vwd~~~~~~~~ 501 (1015)
++..+++||.++ .+..||..+++-.. ...+....... +++ .-++. +.+.||.+ .++..||..+++...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~-~~v-~~~~~--iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYA-SGV-PANNK--LYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcc-eEE-EECCE--EEEECCcCCCCceEEEECCCCeEEE
Confidence 345556666542 46678877654221 11121111112 222 23555 55666653 467788876554322
Q ss_pred --EeeCCCCCEEEEeecccCCccEEEEEeCCC---eEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCC
Q 001776 502 --IFEGHESPVYSICPHHKENIQFIFSTATDG---KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGE 576 (1015)
Q Consensus 502 --~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~ 576 (1015)
.+.........+. -+|.+.+.|+.++ .+..||.++..=...-..........+..-+++..+.|+
T Consensus 346 ~~~l~~~r~~~~~~~----~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG------ 415 (480)
T PHA02790 346 MPSLLKPRCNPAVAS----INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR------ 415 (480)
T ss_pred CCCCCCCCcccEEEE----ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC------
Confidence 1111111111122 1235667776543 466777664322111111111111112223454445443
Q ss_pred ceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCC-----CcEEEEeCCCC
Q 001776 577 SYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDE-----FMIKFWDMDNV 630 (1015)
Q Consensus 577 ~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 630 (1015)
...+||..+.+....-.-.....-..++ .-+++..+.||.+ ..+..||..++
T Consensus 416 -~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 416 -NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred -ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 2667888776554322111110111222 2355666666643 23455555443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=21 Score=36.30 Aligned_cols=186 Identities=10% Similarity=0.053 Sum_probs=103.0
Q ss_pred eCCCCCCCccccCCCC----CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCC
Q 001776 330 YTPQSLGQSSYSTDDL----PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405 (1015)
Q Consensus 330 ~s~~g~~~~~~~~~~~----~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (1015)
+-++|.-++....... ...++..+.-.+-+..+.++.+ .+..+..+.-++|.|+.+......
T Consensus 56 ~v~qG~~l~i~ditn~~~~t~~~l~~~i~~~~l~~Dv~vse~---yvyvad~ssGL~IvDIS~P~sP~~----------- 121 (370)
T COG5276 56 YVGQGFILAILDITNVSLQTHDVLLSVINARDLFADVRVSEE---YVYVADWSSGLRIVDISTPDSPTL----------- 121 (370)
T ss_pred ccccCceEeeccccCcccccCcceEEEEehhhhhheeEeccc---EEEEEcCCCceEEEeccCCCCcce-----------
Confidence 4455555444332222 1234445556777788888876 444455555588888766543221
Q ss_pred CccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeC
Q 001776 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485 (1015)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~ 485 (1015)
...+. -.+--.++. -.|++..++.-|.-..+.|+.+.+.......+......-..++.| |+ +...+..
T Consensus 122 -----~~~ln-t~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn--~AYvA~~ 189 (370)
T COG5276 122 -----IGFLN-TDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GN--YAYVAWR 189 (370)
T ss_pred -----ecccc-CCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cC--eEEEEEe
Confidence 11111 112333344 358888888755558888998766544333444445555677877 55 5667778
Q ss_pred CCeEEEEEcCCCceE---EEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceee
Q 001776 486 DRVIKVWDAVTGTKQ---YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD 546 (1015)
Q Consensus 486 dg~v~vwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 546 (1015)
|+-+.+-|+...... .... ....+.++..+ ++ +....-.+--+.+-|.+..+....
T Consensus 190 d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vs--dn--r~y~vvy~egvlivd~s~~ssp~~ 248 (370)
T COG5276 190 DGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVS--DN--RAYLVVYDEGVLIVDVSGPSSPTV 248 (370)
T ss_pred CCCeEEEEccCCCCCeEEEEEe-cCCceEEEEec--CC--eeEEEEcccceEEEecCCCCCceE
Confidence 899999998765322 2222 22256666543 33 233333344455667766554443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.83 Score=31.25 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCeeEEEeccCCC--eEEEEEecCCeEEEEEcCCc
Q 001776 357 SAVKSMDFHPVQQ--ILLVVGTNMGDVMLWEVGSR 389 (1015)
Q Consensus 357 ~~V~~~~~sp~g~--~lla~g~~dg~v~iwd~~~~ 389 (1015)
+.|.+|.|||... .||+..-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4688999997543 58888888899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=90.37 E-value=36 Score=38.43 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=41.7
Q ss_pred EEEEeCCCCEEEEEeCCC-cEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEE
Q 001776 932 GLAFSNTLNVLVSSGADS-QLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994 (1015)
Q Consensus 932 ~l~~spdg~~l~s~s~dg-~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~ 994 (1015)
-++|.|...++|.+|.-. .|.||.+..........++...+.. ..+++|-.|.-.|+.
T Consensus 343 liAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ER-----PKGiCFltdklLLil 401 (671)
T PF15390_consen 343 LIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNER-----PKGICFLTDKLLLIL 401 (671)
T ss_pred eeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCC-----CceeeEccCCeEEEE
Confidence 379999999999998754 5778988775544444566555544 458999888776655
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.08 E-value=12 Score=33.37 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=69.5
Q ss_pred EEcCCCCcEEEEEEcCCeEEEEEcccc--------eEEEEEcCccCCeEEEEEeC-----CCCEEEEEeCCCcEEEEEcc
Q 001776 891 AFHPQDNNIIAIGMEDSSIQIYNVRVD--------EVKTKLKGHQKRITGLAFSN-----TLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 891 ~~sp~d~~~la~g~~dg~v~vwd~~~~--------~~~~~l~~h~~~v~~l~~sp-----dg~~l~s~s~dg~v~vWd~~ 957 (1015)
.|.. ...-|++++.-|+|.|++.... ..+..|. -...|++++-.+ +...|+.|+.. .+..||+.
T Consensus 5 kfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 5 KFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 4544 4557888888899999987632 2344444 345577776543 34677777765 48899999
Q ss_pred CcccccceEEEecCCCccccCCceEEEEc---c-CCCEEEEEeCCeEEEEEcCCceEec
Q 001776 958 GWEKQASKFLTIPNGRTASALADTRVQFH---L-DQTHLLAVHETQIAIYEAPKLECLK 1012 (1015)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs---~-dg~~l~~~~d~~i~vwd~~~g~~l~ 1012 (1015)
.....-.+. .+ +.|.++.+- . +..++++|....|.-||.+-.|...
T Consensus 82 ~N~d~Fyke--~~-------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 82 NNSDLFYKE--VP-------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cCchhhhhh--Cc-------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 866432111 11 446666663 2 4666777888888888876555543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.05 E-value=20 Score=35.03 Aligned_cols=157 Identities=13% Similarity=0.191 Sum_probs=88.3
Q ss_pred CccEEEEccCCCEEEEEcCCeEEEEeCC--CCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCC------eEEEE---E
Q 001776 845 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDS------SIQIY---N 913 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~sdg~i~iwd~~--~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg------~v~vw---d 913 (1015)
....++-++.+.++++.+..+|.+|++. ..+.+.+|.. -+.|..++++. -|.+|++-=.+. .+|+| .
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence 3444555554555565668889999987 4556666763 47899999999 899999864322 45664 2
Q ss_pred cc--cceEEE-EEcCc---------------------cCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccc--eEE
Q 001776 914 VR--VDEVKT-KLKGH---------------------QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS--KFL 967 (1015)
Q Consensus 914 ~~--~~~~~~-~l~~h---------------------~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~--~~~ 967 (1015)
.. ..+.+. .+-|| +.++.+++-.|-..-|+.|+. +.+.+|.+........ ..+
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEE
Confidence 22 112221 23332 224556666664434444554 4688998876443111 111
Q ss_pred EecCCCccccCC--ceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001776 968 TIPNGRTASALA--DTRVQFHLDQTHLLAVHETQIAIYEAP 1006 (1015)
Q Consensus 968 ~~~~~~~~~~~~--v~~l~fs~dg~~l~~~~d~~i~vwd~~ 1006 (1015)
........+-.. +..++| -+.|+|..++-.+++..+.
T Consensus 176 DFe~~l~~~~~~~~p~~v~i--c~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAI--CEGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred echhhhhheecCceEEEEEE--EeeEEEEecCCEEEEEEEe
Confidence 111100000011 233333 3789999889899888764
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.59 E-value=14 Score=36.16 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=70.2
Q ss_pred cEEEEEEcCCeEEEEEcc--cceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCC------cEEE---EEccCcccccceE
Q 001776 898 NIIAIGMEDSSIQIYNVR--VDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS------QLCV---WSTDGWEKQASKF 966 (1015)
Q Consensus 898 ~~la~g~~dg~v~vwd~~--~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg------~v~v---Wd~~~~~~~~~~~ 966 (1015)
..|..+...+.|.+|++. ..+.+.++.. -+.|..+.++..|+||+|-=.+. .+|+ |+....+..+.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 455555677789999998 3466677764 47899999999999999854322 4555 444321111111
Q ss_pred EEecCCC------------------ccccCCceEEEEccCCCEEEEEeCCeEEEEEcCCce
Q 001776 967 LTIPNGR------------------TASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLE 1009 (1015)
Q Consensus 967 ~~~~~~~------------------~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g~ 1009 (1015)
. ...|| .+-+.++.+++-.|-..-|++|.++.+.+|.+....
T Consensus 107 v-RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 V-RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred E-EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 0 11111 011245788888888777888889999999886443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.57 E-value=20 Score=34.44 Aligned_cols=173 Identities=16% Similarity=0.102 Sum_probs=92.1
Q ss_pred EEEEEeCC--CeEEEEEcCCCceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEE
Q 001776 479 SVVTCGED--RVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTM 556 (1015)
Q Consensus 479 ~l~s~s~d--g~v~vwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 556 (1015)
++.+.+.- ..|++||+.+|+.+..-.-....+..=-....++ .+..-.-.+|.-..+|.++.++.-.+...+. -..
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge-GWg 135 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLEELGRFSYEGE-GWG 135 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc-eEEEEEeccceeEEEChHHhhhhcccccCCc-cee
Confidence 56666543 3799999999988765432211111111111122 2333445678888888887776655544332 223
Q ss_pred EEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEe----eCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCce
Q 001776 557 MAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY----HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632 (1015)
Q Consensus 557 ~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~----~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 632 (1015)
...|++.|+.+ ++..+++.-|.++.....+. .+..-..++-+.|- +|...+-.=.+..|...|..+|+.
T Consensus 136 --Lt~d~~~Lims----dGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 136 --LTSDDKNLIMS----DGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred --eecCCcceEee----CCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 33455556654 34557888887765443332 22222222333332 343333333455566667777776
Q ss_pred eEEEecC----------CCCCCcceEEEcCCC-CEEEEE
Q 001776 633 LASIDAD----------GGLQASPCIRFNKEG-ILLAVS 660 (1015)
Q Consensus 633 ~~~~~~~----------~~~~~v~~v~~s~~~-~~l~~~ 660 (1015)
+..+... .+....+.+++.|++ +++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6655432 122356788998877 455554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.53 E-value=8.9 Score=36.77 Aligned_cols=151 Identities=13% Similarity=0.084 Sum_probs=86.2
Q ss_pred CCCEEEEEc---CCeEEEEeCCCCceeEEeCCCCCCeeE--EEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccC
Q 001776 854 NDSYVMSAS---GGKISLFNMMTFKTMTTFMPPPPAATF--LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1015)
Q Consensus 854 dg~~la~~s---dg~i~iwd~~~~~~~~~l~~~~~~i~~--l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~ 928 (1015)
+|.++.+.+ ...|++||+.+++....-.-....+.. +.-. +..+.+..-.+|...++|.++.+++..+. ..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADTLEELGRFS-YEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHHhhhhcccc-cCC
Confidence 566666665 356999999999887764432212111 1111 22333444578889999999988887775 334
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001776 929 RITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEAPK 1007 (1015)
Q Consensus 929 ~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~i~vwd~~~ 1007 (1015)
.-+.++ .|+..|..++...+++.-|.++-.......+. ..|..- ..+..+.|- ||...|=- .+..|..-+.++
T Consensus 132 eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT-~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 132 EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVT-DDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEE-ECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 445544 36666777777777887777664433222222 222211 122334443 44444433 556666677777
Q ss_pred ceEecc
Q 001776 1008 LECLKQ 1013 (1015)
Q Consensus 1008 g~~l~~ 1013 (1015)
|+.++-
T Consensus 206 GrV~~w 211 (262)
T COG3823 206 GRVVAW 211 (262)
T ss_pred CcEEEE
Confidence 776653
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.38 E-value=39 Score=37.38 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=18.6
Q ss_pred EEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 622 IKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 622 i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
+.+||..+.+....-.... ..-...+..-++.+++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~--~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ--GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC--CccceEEEEeCCEEEEEcCCC
Confidence 4578877665432211111 111222333456677777643
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.19 E-value=18 Score=41.85 Aligned_cols=197 Identities=11% Similarity=0.060 Sum_probs=98.1
Q ss_pred CeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEe----eCCCCCEEEEee
Q 001776 440 HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF----EGHESPVYSICP 515 (1015)
Q Consensus 440 g~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~----~~h~~~v~~i~~ 515 (1015)
-.|+|+++.. ..+. .+.-..+.+..+.|+.+.. |+.-..||+++++++- |+.+..+ ......|..+.+
T Consensus 64 ~~I~If~~sG-~lL~---~~~w~~~~lI~mgWs~~ee---LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~ 135 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLG---RILWKHGELIGMGWSDDEE---LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRF 135 (829)
T ss_pred eeEEEEeccc-cchH---HHHhcCCCeeeecccCCce---EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEE
Confidence 4578888754 3333 2222333788999998776 7888999999999964 3333221 222334554544
Q ss_pred cccCCccEEEEEeCCCeEEEEe-CCCCCceeeecC-CCCce--EEEEECCCCC--EEEEEeeCCCCCceEEEEeCCCCe-
Q 001776 516 HHKENIQFIFSTATDGKIKAWL-YDNLGSRVDYDA-PGHSS--TMMAYSADGA--RLFSCGTNKEGESYLVEWNESEGA- 588 (1015)
Q Consensus 516 ~~~~~~~~l~s~~~dg~i~vwd-~~~~~~~~~~~~-~~~~i--~~~~~s~~~~--~l~~~~~d~~~~~~i~iwd~~~~~- 588 (1015)
.. +| ++.-..+|.+.+-+ .... ....... +.... .+-+..++++ .++.. .+. .....+.......
T Consensus 136 f~--~G--Vavlt~~g~v~~i~~~~~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~-v~~--~v~~~~~q~~~~~~ 207 (829)
T KOG2280|consen 136 FH--NG--VAVLTVSGQVILINGVEEP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLD-VDV--AVGLHICQVEESRV 207 (829)
T ss_pred ec--Cc--eEEEecCCcEEEEcCCCcc-hhhhCCCCCCccCCCcceeEecCCCcceeEEe-ech--hhhhcccceecccc
Confidence 33 33 44444455544432 2211 1111111 11111 2222222221 11110 000 0001111111111
Q ss_pred eeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCC
Q 001776 589 VKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 589 ~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 654 (1015)
....+.... ..+..+.+||+.++|+--..+|.|.+-+.+..+....+....+. .-..++|..+.
T Consensus 208 q~~~~~~~~-~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wcgnd 271 (829)
T KOG2280|consen 208 QLHALSWPN-SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWCGND 271 (829)
T ss_pred cccccCCCC-ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-chHhceeecCC
Confidence 111122222 26777899999999999999999999988877777666543222 22356665443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=89.14 E-value=16 Score=32.61 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=69.3
Q ss_pred EEEeccCCCeEEEEEecCCeEEEEEcCCcceEeE---eeeEEEeccCCCccccccccccCCCCEEEEEEcc-----CCCE
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV---KSFKVWELGACSMPLQASLSSDYTASVNRVMWSP-----DGTL 432 (1015)
Q Consensus 361 ~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----dg~~ 432 (1015)
.-.|....+ -|+.++..|+|.|++......... ..+. +-.-...|++++-.+ +...
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~---------------~LNin~~italaaG~l~~~~~~D~ 66 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDIS---------------FLNINQEITALAAGRLKPDDGRDC 66 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCcee---------------EEECCCceEEEEEEecCCCCCcCE
Confidence 344555555 567788889999999765432211 0111 122346777776554 3456
Q ss_pred EEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCC--ceEEEEEeCCCeEEEEEcCCCceEEE
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK--QLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1015)
Q Consensus 433 las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 502 (1015)
|+.|+.. .+..||+.....+. ++.-...|.++.+-.-+. . -++..+.+.+|.-+|.+-.+..++
T Consensus 67 LliGt~t-~llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~-~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 67 LLIGTQT-SLLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPS-PLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred EEEeccc-eEEEEEcccCchhh----hhhCccceeEEEEEecCCCCC-cEEEECceEEEEEeCCCCcEEEEE
Confidence 7777655 49999999876554 233446677777632211 1 245555566777777443333333
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.11 E-value=43 Score=37.58 Aligned_cols=105 Identities=9% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC
Q 001776 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 418 ~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~ 497 (1015)
..+|..+.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |++.+.+..
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G~ 235 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEGW 235 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhhc
Confidence 46788888888885 55677888 778888887655421 112335677777777776 67777666 566664432
Q ss_pred ceEEEeeC-CCCCEEEEeecccCCccEEEEEeCCCeE
Q 001776 498 TKQYIFEG-HESPVYSICPHHKENIQFIFSTATDGKI 533 (1015)
Q Consensus 498 ~~~~~~~~-h~~~v~~i~~~~~~~~~~l~s~~~dg~i 533 (1015)
+....... ....|..+.- +..| .+-.|+..|..
T Consensus 236 ~~sn~~~~lp~~~I~ll~q--D~qG-~lWiGTenGl~ 269 (671)
T COG3292 236 RASNWGPMLPSGNILLLVQ--DAQG-ELWIGTENGLW 269 (671)
T ss_pred cccccCCCCcchheeeeec--ccCC-CEEEeecccce
Confidence 22111111 2333443332 2332 45666666644
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.90 E-value=10 Score=41.30 Aligned_cols=152 Identities=14% Similarity=0.201 Sum_probs=92.4
Q ss_pred ccCCCEEEEEc--CCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCC-------CCcEEEEEEcCCeEEEEEcc-cceEEE
Q 001776 852 SKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ-------DNNIIAIGMEDSSIQIYNVR-VDEVKT 921 (1015)
Q Consensus 852 s~dg~~la~~s--dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~-------d~~~la~g~~dg~v~vwd~~-~~~~~~ 921 (1015)
..|..+|..-+ ..+++-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|.. .|..+.
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee
Confidence 34555555443 467888899999999888766654 5677772 223444 4455555555543 232222
Q ss_pred EEcCccCCeEEEEEe----CCCCEEEEEeCCCcEEEEEccCcccccceEEEecCCCccccCCceEEEEccCCCEEEEEeC
Q 001776 922 KLKGHQKRITGLAFS----NTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHE 997 (1015)
Q Consensus 922 ~l~~h~~~v~~l~~s----pdg~~l~s~s~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d 997 (1015)
.-. ...-++.=.|| ....|+|.+|.-|-|++||--.-... . .+. + -..+|..+..+.+|+++++.-.
T Consensus 553 v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-t-alP---~---lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 553 VVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-T-ALP---G---LGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred eee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhh-h-cCc---c---cccceeeeEeecCCcEEEEeec
Confidence 221 11122222233 23459999999999999996553211 1 111 1 1156889999999999999778
Q ss_pred CeEEEEEcC--CceEeccCC
Q 001776 998 TQIAIYEAP--KLECLKQVG 1015 (1015)
Q Consensus 998 ~~i~vwd~~--~g~~l~~~~ 1015 (1015)
..+.+-|+. .|+..+++|
T Consensus 624 ~yllL~d~~ik~g~~aGr~G 643 (776)
T COG5167 624 NYLLLTDVPIKYGQPAGRDG 643 (776)
T ss_pred ceEEEEecccccCCccccch
Confidence 888888873 566655544
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.30 E-value=19 Score=44.97 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=29.8
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERI 392 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~ 392 (1015)
-......++|+|... ++|.|+.+|.|.++-...-+..
T Consensus 34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence 444677899999988 8999999999999987655443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=88.04 E-value=22 Score=40.64 Aligned_cols=87 Identities=8% Similarity=0.109 Sum_probs=54.6
Q ss_pred eCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeCCCCEEEEEeCCC
Q 001776 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADS 949 (1015)
Q Consensus 870 d~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg 949 (1015)
|+-.|+....+ .|.+.|--+.... .+..|..-...-.+.++|+++.+.-..+. -.+.+.|-|....++.-+.|+
T Consensus 324 dli~g~~~~~i-nh~~~vdwielne-~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~dn 397 (1636)
T KOG3616|consen 324 DLIGGQNEGFI-NHEGAVDWIELNE-RAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGDN 397 (1636)
T ss_pred ecccCcccccc-cccccccceeccc-hhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCCc
Confidence 44444443333 4788888888877 66666666556678889988754221111 134578999999998888887
Q ss_pred cEEEEEccCcccc
Q 001776 950 QLCVWSTDGWEKQ 962 (1015)
Q Consensus 950 ~v~vWd~~~~~~~ 962 (1015)
....|+++..+..
T Consensus 398 l~iwyn~d~peqv 410 (1636)
T KOG3616|consen 398 LCIWYNIDAPEQV 410 (1636)
T ss_pred eEEEecCCcchhh
Confidence 4444466665533
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.02 E-value=51 Score=42.25 Aligned_cols=72 Identities=11% Similarity=0.171 Sum_probs=48.8
Q ss_pred CeEEEEEeCCCCE-EEEEeCCCcEEEEeCCCC------ceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEcc
Q 001776 600 SVGVVQFDTTKNR-FLAAGDEFMIKFWDMDNV------NLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 600 ~i~~v~~~~~~~~-l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~ 672 (1015)
.+.+...++++.. ++++-....+.+|++... +....+...++.....+|.++++ .|+++..+|.++.=++.
T Consensus 439 ~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d--rLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 439 KLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND--RLFVADSEGKLYSADLP 516 (1774)
T ss_pred hcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC--eEEEEeCCCCEEecccc
Confidence 4566777888887 444445556799988654 22234454455557788888876 58888889998887665
Q ss_pred C
Q 001776 673 D 673 (1015)
Q Consensus 673 ~ 673 (1015)
.
T Consensus 517 ~ 517 (1774)
T PF11725_consen 517 A 517 (1774)
T ss_pred c
Confidence 4
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.84 E-value=45 Score=36.21 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=101.6
Q ss_pred EEEEEeCCCeEEEEEcCCCceEEEeeCCCCCEEEEee--cccCCccE--EEEEe-CC---CeEEEEeCCCCCceee-ecC
Q 001776 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP--HHKENIQF--IFSTA-TD---GKIKAWLYDNLGSRVD-YDA 549 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~~~--l~s~~-~d---g~i~vwd~~~~~~~~~-~~~ 549 (1015)
+++....++-+.+||+ .|+.++.+. .+.++.+.. ...-+|+. |+.++ .+ .+|++|.++....... ...
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6788888899999996 677777664 234444432 11112222 33443 32 5799998764322222 211
Q ss_pred -------CCCceEEEEE--CC-CCCEEEEEeeCCCCCceEEEEeC---CCC----eeeEEeeCCCCCCeEEEEEeCCCCE
Q 001776 550 -------PGHSSTMMAY--SA-DGARLFSCGTNKEGESYLVEWNE---SEG----AVKRTYHGLGKRSVGVVQFDTTKNR 612 (1015)
Q Consensus 550 -------~~~~i~~~~~--s~-~~~~l~~~~~d~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~i~~v~~~~~~~~ 612 (1015)
....++.+|+ ++ +|...+.... + ++.+..|-+ ..+ +.++.|.... .+..+........
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGR 221 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTE
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCC
Confidence 1124667776 44 4554444432 2 234555544 333 4677777644 5778888888899
Q ss_pred EEEEeCCCcEEEEeCCCC-----ceeEEEecCCCCCCcceEEEc--CCC--CEEEEEeCCCcEEEEEccCCce
Q 001776 613 FLAAGDEFMIKFWDMDNV-----NLLASIDADGGLQASPCIRFN--KEG--ILLAVSTNDNGIKILANADGIR 676 (1015)
Q Consensus 613 l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~v~~v~~s--~~~--~~l~~~~~dg~i~iw~~~~~~~ 676 (1015)
|+.+-++--|.-|+.+.. ..+.......-...|-.+++- .++ .+|++.-.+++..||+......
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~ 294 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNA 294 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCc
Confidence 999999888888887622 222222222223456666664 333 3444444677899999875433
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.80 E-value=54 Score=37.11 Aligned_cols=118 Identities=9% Similarity=0.075 Sum_probs=67.4
Q ss_pred cCCCCEEEEEEccC----CCEEEEEECCCeEEEEEccC-----Cceeee-eeEEecccCc--eeEEEEecCCCceEEEEE
Q 001776 416 DYTASVNRVMWSPD----GTLFGVAYSKHIVHLYTYHG-----GDELRN-HLEIEAHVGS--VNDLAFSYPNKQLSVVTC 483 (1015)
Q Consensus 416 ~h~~~V~~l~~spd----g~~las~~~dg~v~iwd~~~-----~~~~~~-~~~~~~h~~~--V~~~~~s~~~~~~~l~s~ 483 (1015)
|.-..|..++|.|- ...|+.......|.||.+.. ++.+.. ..++. ..-+ -..+.|+|... .|+.-
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~--iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKA--ILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCCc--eEEEE
Confidence 44567999999994 33455555667799998762 221111 11111 1111 24678999888 45544
Q ss_pred eCCCeEEEEEcCC--CceEEEeeCCCCCEEEEeecccCCccEEEEEeCCCeEEEEeC
Q 001776 484 GEDRVIKVWDAVT--GTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538 (1015)
Q Consensus 484 s~dg~v~vwd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~ 538 (1015)
.....-.++++.. .+....++ ..+.|.|.||..++. +++++.+..=.-++||-
T Consensus 131 T~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~-RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ-RLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC-EEEEEeCCeEEEEEecC
Confidence 4444444566553 23333454 567799999977554 34444454455678863
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.32 E-value=25 Score=37.91 Aligned_cols=163 Identities=12% Similarity=0.100 Sum_probs=91.8
Q ss_pred CCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCcc-EEEEcc
Q 001776 775 TAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP-CFALSK 853 (1015)
Q Consensus 775 ~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~-~l~~s~ 853 (1015)
....+..+-..|||+.+..-+. ..+.++++.....+.. .. .|...|.. ...|+ .+..-.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r--kl-------~~dspg~~----------~~~Vte~l~lL~ 278 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR--KL-------VDDSPGDS----------RHQVTEQLYLLS 278 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh--hh-------hhcCCCch----------HHHHHHHHHHHh
Confidence 3456778889999998887776 5778887765432211 11 11111110 01111 111122
Q ss_pred CCCEEEEEc-CCeEEEE-eCCCC-----ceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCc
Q 001776 854 NDSYVMSAS-GGKISLF-NMMTF-----KTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGH 926 (1015)
Q Consensus 854 dg~~la~~s-dg~i~iw-d~~~~-----~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h 926 (1015)
.|.-+.+++ ||-|.-| |+..+ ..++.++-...++..+.--. +.+-+++-+.+|++.++.-...+.+..-...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 344455555 7777766 44322 22333333334454444333 4556777788888888875554443222222
Q ss_pred cCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 927 QKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 927 ~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
..+.-+++||.+.+|++-. .|.++++.+++..
T Consensus 358 -~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 358 -QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred -cCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 2466789999999998755 4568998888744
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=87.10 E-value=3.7 Score=39.37 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=26.7
Q ss_pred CCeEEEEEeCCC------CEEEEEeCCCcEEEEEccCc
Q 001776 928 KRITGLAFSNTL------NVLVSSGADSQLCVWSTDGW 959 (1015)
Q Consensus 928 ~~v~~l~~spdg------~~l~s~s~dg~v~vWd~~~~ 959 (1015)
..|..++|||-| -+|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 368999999955 47899999999999997743
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.03 E-value=48 Score=35.71 Aligned_cols=69 Identities=7% Similarity=-0.024 Sum_probs=34.2
Q ss_pred cEEEEEeC-----CCeEEEEeCCCCCceeeecCCC-CceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeee
Q 001776 522 QFIFSTAT-----DGKIKAWLYDNLGSRVDYDAPG-HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590 (1015)
Q Consensus 522 ~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~ 590 (1015)
.+.+.|+. ...+..||+.+..=...-.... ......+...+++..+.++.++.....+..||+.+.+..
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 56666664 2357778776543221111111 111222233456666666654322233678898876543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.95 E-value=44 Score=35.21 Aligned_cols=280 Identities=11% Similarity=0.078 Sum_probs=121.6
Q ss_pred eccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcC-CcceEeEeeeEEEeccCCCcccccccccc-CCCCEEEEEEccCC
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVG-SRERIAVKSFKVWELGACSMPLQASLSSD-YTASVNRVMWSPDG 430 (1015)
Q Consensus 353 ~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg 430 (1015)
+.-...+..|+|..+.. -.++|.. |. |+... .|+.=...... ... -.-..++|.|..+
T Consensus 13 l~t~~~l~dV~F~d~~~-G~~VG~~-g~--il~T~DGG~tW~~~~~~---------------~~~~~~~~l~~I~f~~~- 72 (302)
T PF14870_consen 13 LPTDKPLLDVAFVDPNH-GWAVGAY-GT--ILKTTDGGKTWQPVSLD---------------LDNPFDYHLNSISFDGN- 72 (302)
T ss_dssp -S-SS-EEEEEESSSS--EEEEETT-TE--EEEESSTTSS-EE--------------------S-----EEEEEEEETT-
T ss_pred cCCCCceEEEEEecCCE-EEEEecC-CE--EEEECCCCccccccccC---------------CCccceeeEEEEEecCC-
Confidence 44566889999995555 5566654 43 33333 33211110000 000 1124567777643
Q ss_pred CEEEEEECCCeEEEEEccCCceeeeeeEEe-cccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCce-EEEeeCCCC
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHES 508 (1015)
Q Consensus 431 ~~las~~~dg~v~iwd~~~~~~~~~~~~~~-~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~h~~ 508 (1015)
..+++ +..+ +.+...+.|+.-.... +. .-.+....+....++. ..+ .+..|.|+.=. +.|+. ......-.+
T Consensus 73 ~g~iv-G~~g-~ll~T~DgG~tW~~v~-l~~~lpgs~~~i~~l~~~~--~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~g 145 (302)
T PF14870_consen 73 EGWIV-GEPG-LLLHTTDGGKTWERVP-LSSKLPGSPFGITALGDGS--AEL-AGDRGAIYRTT-DGGKTWQAVVSETSG 145 (302)
T ss_dssp EEEEE-EETT-EEEEESSTTSS-EE-----TT-SS-EEEEEEEETTE--EEE-EETT--EEEES-STTSSEEEEE-S---
T ss_pred ceEEE-cCCc-eEEEecCCCCCcEEee-cCCCCCCCeeEEEEcCCCc--EEE-EcCCCcEEEeC-CCCCCeeEcccCCcc
Confidence 34444 4555 4444555555443221 11 1223334444444443 333 34445443322 33332 222334456
Q ss_pred CEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEe-CCCC
Q 001776 509 PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWN-ESEG 587 (1015)
Q Consensus 509 ~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd-~~~~ 587 (1015)
.+..+.. .++|.++++++....+.-||.-...-..........|.++.|.|++...+.+ .. +.|+.=+ ....
T Consensus 146 s~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G----g~~~~s~~~~~~ 218 (302)
T PF14870_consen 146 SINDITR--SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG----GQIQFSDDPDDG 218 (302)
T ss_dssp -EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT----TEEEEEE-TTEE
T ss_pred eeEeEEE--CCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC----cEEEEccCCCCc
Confidence 6777654 4666777777766666778654322233333345689999999998876654 22 2355555 1222
Q ss_pred eeeEE-eeC--CCCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-CCCCCCcceEEEcCCCCEEEEEeCC
Q 001776 588 AVKRT-YHG--LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVSTND 663 (1015)
Q Consensus 588 ~~~~~-~~~--~~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~d 663 (1015)
+.-.. +.. .....+..+++.+++...++|+ .|.+. ...+.|+.-+.... ..-...++.+.|..+.+-++ .+.+
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~ 295 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQD 295 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-ST
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCC
Confidence 21111 111 1222478889998877666555 45443 45566665555432 22234577888876654454 4577
Q ss_pred CcEEEE
Q 001776 664 NGIKIL 669 (1015)
Q Consensus 664 g~i~iw 669 (1015)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 777554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.95 E-value=0.12 Score=55.24 Aligned_cols=144 Identities=15% Similarity=0.284 Sum_probs=101.4
Q ss_pred eeeeeeCCCCCCCccccCCCC------CceeEEEeccCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeE
Q 001776 325 ILPVAYTPQSLGQSSYSTDDL------PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398 (1015)
Q Consensus 325 i~~~~~s~~g~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~ 398 (1015)
.....|.|.+..++....+.+ .++.+..+..++....++|.-+|..+++.+-..+.+.+||+.+......
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL---- 112 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL---- 112 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH----
Confidence 334456676766666654433 3455556667788889999999987778888899999999976532110
Q ss_pred EEeccCCCccccccccccCCCCEEEEEEccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCce
Q 001776 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQL 478 (1015)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~ 478 (1015)
..-..|.... +.|++.+..++.+...|.+.|++-.+.+.+. ....|...+++++|.+.+.
T Consensus 113 -------------E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~-- 172 (615)
T KOG2247|consen 113 -------------ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDY-- 172 (615)
T ss_pred -------------hccCcchHHH--HhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccce--
Confidence 0011222332 7899999999999999999999987765443 3344999999999999885
Q ss_pred EEEEEeCCCeEEEEE
Q 001776 479 SVVTCGEDRVIKVWD 493 (1015)
Q Consensus 479 ~l~s~s~dg~v~vwd 493 (1015)
.+.++.|..+.+-.
T Consensus 173 -vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 173 -VILCDCDNTLSVTT 186 (615)
T ss_pred -eeecCcHHHHHHhh
Confidence 67888777665544
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.70 E-value=0.11 Score=55.59 Aligned_cols=139 Identities=17% Similarity=0.219 Sum_probs=92.7
Q ss_pred EEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCccEEEEccCCCEEEE
Q 001776 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMS 860 (1015)
Q Consensus 781 ~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~ 860 (1015)
...|-+.+.-++.++.+..+..||-.. ...... ...+....++|..+|..++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag----------------------q~~le~-----n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG----------------------QVILEL-----NPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc----------------------ceeccc-----CCchhHhhhhhccccchhhh
Confidence 456777777788888887777775321 111110 13445566788888877766
Q ss_pred Ec--CCeEEEEeCCCCceeEEeC-CCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccCCeEEEEEeC
Q 001776 861 AS--GGKISLFNMMTFKTMTTFM-PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSN 937 (1015)
Q Consensus 861 ~s--dg~i~iwd~~~~~~~~~l~-~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~~v~~l~~sp 937 (1015)
.. .+.+.+||+.+... .++. +-...-.-+.|++ +...++.|...|.+.|++-.+.+.+...--|...++++++.+
T Consensus 92 lAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 55 68899999965322 2222 1112222378999 899999999999999999887776655555999999999988
Q ss_pred CCCEEEEEeCCC
Q 001776 938 TLNVLVSSGADS 949 (1015)
Q Consensus 938 dg~~l~s~s~dg 949 (1015)
.+ +.+.++.|.
T Consensus 170 Ed-~vil~dcd~ 180 (615)
T KOG2247|consen 170 ED-YVILCDCDN 180 (615)
T ss_pred cc-eeeecCcHH
Confidence 76 344454443
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=85.86 E-value=2.3 Score=38.54 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhcccccccccc
Q 001776 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQ 129 (1015)
Q Consensus 67 ~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 129 (1015)
++.. ++|.++-+.||||+..|...+|..|+++--.-+.....+..++|..+.......+++.
T Consensus 25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~ 86 (133)
T cd08044 25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENEL 86 (133)
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHH
Confidence 4444 9999999999999999999999999997444433345577777777666555544443
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=85.77 E-value=4.3 Score=40.61 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=49.9
Q ss_pred CCcEEEEEEcCCeEEEEEcccceEEEEE-------c-------CccCCeEEEEEeCCCCEEEEEeCCCcEEEEEccCcc
Q 001776 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKL-------K-------GHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 896 d~~~la~g~~dg~v~vwd~~~~~~~~~l-------~-------~h~~~v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~ 960 (1015)
.+.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|+.+-+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccce
Confidence 6778999999999999999988765332 2 3456789999999998887766 4778999876544
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.29 E-value=3.3 Score=27.82 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=23.0
Q ss_pred cCCCeeEEEeccCCCeEEEEEecC--CeEEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNM--GDVMLW 384 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~d--g~v~iw 384 (1015)
....-....|||||+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445677899999999888888877 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=84.07 E-value=4.9 Score=46.91 Aligned_cols=124 Identities=14% Similarity=0.149 Sum_probs=74.3
Q ss_pred CeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccC--CCccccccccccCCCCEEEEEEc--cCCCEEEEEECCCeEEE
Q 001776 369 QILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGA--CSMPLQASLSSDYTASVNRVMWS--PDGTLFGVAYSKHIVHL 444 (1015)
Q Consensus 369 ~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~V~~l~~s--pdg~~las~~~dg~v~i 444 (1015)
..+|+.+..||.|.+|..++--...... .-+... .....+..+...-...++.+++. ...++||++++...|.|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3488999999999999863210000000 000000 00011111223345689999999 88899999999998988
Q ss_pred EEccCCceeeeeeEEecccCceeEEEEecCCC--c--eEEEEEeCCCeEEEEEc
Q 001776 445 YTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK--Q--LSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 445 wd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~--~--~~l~s~s~dg~v~vwd~ 494 (1015)
|-......-.....-..|...|-+|+|.++.. . ..+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86654211111001113667799999987651 1 36888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=68 Score=34.72 Aligned_cols=153 Identities=7% Similarity=-0.063 Sum_probs=79.9
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCCCCce--eeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR--VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
...+.++.+.+ ++. ++..+..|.+.. ..+..... .........++++.+.++++.++++. .+ .+.+=..
T Consensus 172 ~g~~~~i~~~~--~g~-~v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G----~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSP--DGK-YVAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GG----QIRFNDP 242 (334)
T ss_pred cceEEEEEECC--CCe-EEEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CC----EEEEccC
Confidence 45577777654 334 445555565542 11222221 12223345788999999998777654 22 2322123
Q ss_pred CCCeeeEEeeCC---CCCCeEEEEEeCCCCEEEEEeCCCcEEEEeCCCCceeEEEec-CCCCCCcceEEEcCCCCEEEEE
Q 001776 585 SEGAVKRTYHGL---GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 585 ~~~~~~~~~~~~---~~~~i~~v~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~ 660 (1015)
..|..-...... ....+..+.+.+++.. +.++.+|.+. .....++.-..... ..-....+.+.|..+++.++ .
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 319 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-L 319 (334)
T ss_pred CCCCccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-E
Confidence 333322211111 1224677888887764 4555667665 34455554444332 11123466777776666655 5
Q ss_pred eCCCcEEEEEc
Q 001776 661 TNDNGIKILAN 671 (1015)
Q Consensus 661 ~~dg~i~iw~~ 671 (1015)
+..|.|..|+-
T Consensus 320 G~~G~il~~~~ 330 (334)
T PRK13684 320 GQRGVLLRYVG 330 (334)
T ss_pred CCCceEEEecC
Confidence 56788877653
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.86 E-value=37 Score=37.98 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred eeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEE-------cCccCCeEEEEEeCCC------CEE
Q 001776 876 TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKL-------KGHQKRITGLAFSNTL------NVL 942 (1015)
Q Consensus 876 ~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l-------~~h~~~v~~l~~spdg------~~l 942 (1015)
.+..+...-.....|+|.| |+++|++--..|.|++++-.++...... ..-.+....|+++|+- .+|
T Consensus 21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Q ss_pred EEEe----------CCCcEEEEEccCcccccceEEEecCCCcccc-CCceEEEEccCCCEEEEEeCC
Q 001776 943 VSSG----------ADSQLCVWSTDGWEKQASKFLTIPNGRTASA-LADTRVQFHLDQTHLLAVHET 998 (1015)
Q Consensus 943 ~s~s----------~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~fs~dg~~l~~~~d~ 998 (1015)
.... ....|.-|.+............++.+..... ..-..|+|.|||++.++..|+
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=83.43 E-value=23 Score=35.77 Aligned_cols=145 Identities=13% Similarity=0.153 Sum_probs=77.8
Q ss_pred EEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcC---CeEEEEEccc----ceEEE---EEcCccCCeEEEEE
Q 001776 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRV----DEVKT---KLKGHQKRITGLAF 935 (1015)
Q Consensus 866 i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~d---g~v~vwd~~~----~~~~~---~l~~h~~~v~~l~~ 935 (1015)
-.+||+.+++....-.....-..+=++-+ ||++|.+|+.. ..+++++..+ ..... .+. ....--++..
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 45788887654332222222333446778 89999998753 2577777543 11111 111 1222334556
Q ss_pred eCCCCEEEEEeCCCc-EEEEEccCcc--cccceEEEecCCCccccCCceEEEEccCCCEEEEEeCCeEEEEEcCCceEec
Q 001776 936 SNTLNVLVSSGADSQ-LCVWSTDGWE--KQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLK 1012 (1015)
Q Consensus 936 spdg~~l~s~s~dg~-v~vWd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~i~vwd~~~g~~l~ 1012 (1015)
-|||+.|+.|+.+.- ..+|.-.... ......+....... ...---.+...|||+.++.+..+ -.+||..+.+.++
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~-~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTL-PNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccC-ccccCceEEEcCCCCEEEEEcCC-cEEEeCCCCeEEe
Confidence 689999999887743 4455432211 11111111000000 00122357789999998887543 5677998887766
Q ss_pred cC
Q 001776 1013 QV 1014 (1015)
Q Consensus 1013 ~~ 1014 (1015)
.|
T Consensus 204 ~l 205 (243)
T PF07250_consen 204 TL 205 (243)
T ss_pred eC
Confidence 54
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=83.34 E-value=70 Score=34.42 Aligned_cols=71 Identities=13% Similarity=0.011 Sum_probs=36.9
Q ss_pred CCCEEEEEee-CCCCCceEEEEeCCCCeeeEEeeCCCCCCeEEEEEeCCCCEEEEEeCCC----cEEEEeCCCCce
Q 001776 562 DGARLFSCGT-NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF----MIKFWDMDNVNL 632 (1015)
Q Consensus 562 ~~~~l~~~~~-d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~v~~~~~~~~l~~~~~dg----~i~vwd~~~~~~ 632 (1015)
+++..+.++. ++.....+..||+.+.+....-...........+...++...+.||.++ .+.+||..+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4555566553 2222346888998876544321111111112222334566777777553 356888877654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.66 E-value=18 Score=36.52 Aligned_cols=144 Identities=13% Similarity=0.086 Sum_probs=81.3
Q ss_pred EEEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCC----CeeeEEee-CCCCCCeEEEEEeC
Q 001776 534 KAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE----GAVKRTYH-GLGKRSVGVVQFDT 608 (1015)
Q Consensus 534 ~vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~----~~~~~~~~-~~~~~~i~~v~~~~ 608 (1015)
.+||+.+.+...........+.+-.+.+||+.+.+++.. ++...+++++... ........ -........+..-|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~-~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDN-DGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCC-ccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 378888766544333333455566788999999888753 4566788888654 11111100 01112344566678
Q ss_pred CCCEEEEEeCCC-cEEEEeCCC-CceeEEE---ec---CCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeee
Q 001776 609 TKNRFLAAGDEF-MIKFWDMDN-VNLLASI---DA---DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRT 680 (1015)
Q Consensus 609 ~~~~l~~~~~dg-~i~vwd~~~-~~~~~~~---~~---~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 680 (1015)
||+.|+.||... +..+|.... ......+ .. ......-.-+...|+|++++.+..+ -.|||..++ ..++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n-~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN-TVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC-eEEee
Confidence 999999998654 445555422 1111111 10 0111223356778999999888654 445687776 44444
Q ss_pred e
Q 001776 681 V 681 (1015)
Q Consensus 681 ~ 681 (1015)
+
T Consensus 205 l 205 (243)
T PF07250_consen 205 L 205 (243)
T ss_pred C
Confidence 4
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.01 E-value=5.8 Score=27.05 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=27.8
Q ss_pred cCCCEEEEEc--CCeEEEEeCCCCceeEEeCCCCCCeeEEEE
Q 001776 853 KNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAF 892 (1015)
Q Consensus 853 ~dg~~la~~s--dg~i~iwd~~~~~~~~~l~~~~~~i~~l~~ 892 (1015)
||+++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777766 68999999999888887764 233344444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins | Back alignment and domain information |
|---|
Probab=81.89 E-value=11 Score=32.48 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHhhhcChHHHHHHHHHhcCCCccHHHHHHHhhcccHHHHHHHhcCCccccCCcchhHHHHHHHHHHH
Q 001776 2 SSLSRELVFLILQFLDEEKFKETVHKLEQDSGFFFNMRYFEDMVTNGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1015)
Q Consensus 2 ~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~ 81 (1015)
..+.+|=+..|.+|++..| +.+.+++|-||++- ..|+ +-|+.++.|...+.... .-...+...
T Consensus 32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYP--TvR~-----rLd~ii~~lg~~~~~~~-------~~~~~~~~I 94 (113)
T PF09862_consen 32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYP--TVRN-----RLDKIIEKLGYEEDEEE-------EEEDERKEI 94 (113)
T ss_pred hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcH--HHHH-----HHHHHHHHhCCCCCccc-------ccchhHHHH
Confidence 4567888899999999999 88889999999995 2222 11333333332111111 122357788
Q ss_pred HHHHhccC--HHHHHHHHH
Q 001776 82 LEALDKRD--RAKAVEILV 98 (1015)
Q Consensus 82 ~Ell~~~~--~~~a~~~l~ 98 (1015)
|+.|+.|+ .++|+..|+
T Consensus 95 L~~L~~GeIs~eeA~~~Lk 113 (113)
T PF09862_consen 95 LDKLEKGEISVEEALEILK 113 (113)
T ss_pred HHHHHcCCCCHHHHHHHhC
Confidence 99999998 777988774
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=80.88 E-value=1.5e+02 Score=36.47 Aligned_cols=159 Identities=11% Similarity=0.103 Sum_probs=100.3
Q ss_pred CCCCccEEEEc---c----CCCEEEEEcCCeEEEEeCCCC---------------ceeEEeCC---CCCCeeEEEEcCCC
Q 001776 842 PEDAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMTTFMP---PPPAATFLAFHPQD 896 (1015)
Q Consensus 842 ~~~~v~~l~~s---~----dg~~la~~sdg~i~iwd~~~~---------------~~~~~l~~---~~~~i~~l~~sp~d 896 (1015)
...+|..++|+ . ..++|++-....+.|+...-. ..+..+.. -..+...++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46788888887 2 235888888888888872111 22333332 12367889999988
Q ss_pred CcEEEEEEcCCeEEEEEcccc-----eEEEEEcCccCC----------eEEEEEeCCCCEEEEEeCCCcEEEEEccCccc
Q 001776 897 NNIIAIGMEDSSIQIYNVRVD-----EVKTKLKGHQKR----------ITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK 961 (1015)
Q Consensus 897 ~~~la~g~~dg~v~vwd~~~~-----~~~~~l~~h~~~----------v~~l~~spdg~~l~s~s~dg~v~vWd~~~~~~ 961 (1015)
...+|+.+..|...||++... ........+.+. -..+.|.++.+.|+.++... +.++|+++...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCc
Confidence 889999999999999999211 111111112222 33788988888888887654 88999998664
Q ss_pred ccceEEEecCCCccccCCceEEEEccC-CCEEEEEeCCeEEEEEcCC
Q 001776 962 QASKFLTIPNGRTASALADTRVQFHLD-QTHLLAVHETQIAIYEAPK 1007 (1015)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~~~d~~i~vwd~~~ 1007 (1015)
... +.... . ...|..+.-+++ -.++++-....|.+.++.+
T Consensus 237 ~~~--l~~~~--~--~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY--LVTAK--T--WSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch--hccCC--C--hhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 321 11111 1 156888888877 2333333346777777755
|
These proteins are found in fungi. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.9e+02 Score=37.61 Aligned_cols=149 Identities=11% Similarity=0.196 Sum_probs=84.1
Q ss_pred cCCCeeEEEeccCCCeEEEEEecCCeEEEEEcCCcceEeEeeeEEEeccCCCccccccccccCCCCEEEEEEccCCCEEE
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~~~~sp~g~~lla~g~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (1015)
|-..++.|.-+++|.++=+ .|+.++.||..... |... -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceEe
Confidence 5556777777777774432 46778888766542 3210 012234555555555666655
Q ss_pred EEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCC------ce--EEEeeCC
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG------TK--QYIFEGH 506 (1015)
Q Consensus 435 s~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~------~~--~~~~~~h 506 (1015)
.++. .+-|+..+.... ..-..+.+...+++|.- .++++.....+.+|++... ++ ...+.+-
T Consensus 419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2221 233444433111 12234677778889983 3667666677899998643 11 1233333
Q ss_pred CCCEEEEeecccCCccEEEEEeCCCeEEEEeCCC
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~vwd~~~ 540 (1015)
.....+|.++. ..|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~----drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN----DRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC----CeEEEEeCCCCEEeccccc
Confidence 33555666633 2688899999987776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.71 E-value=1.2e+02 Score=35.51 Aligned_cols=482 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCeeEEEeccCCCeEEEEEecCCe---EEEEEcCCcceEeEeeeEEEeccCCCccccccccc------cCCCCEEEEEE
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGD---VMLWEVGSRERIAVKSFKVWELGACSMPLQASLSS------DYTASVNRVMW 426 (1015)
Q Consensus 356 ~~~V~~~~~sp~g~~lla~g~~dg~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~V~~l~~ 426 (1015)
++.+-.++|..-+..+.++|.-+.+ |.|.......-... ...+....+. .|-+.++.+.|
T Consensus 16 sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~-----------l~~F~ip~f~dkl~s~~hf~~~~~~~f 84 (1243)
T COG5290 16 SGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESG-----------LKRFEIPFFPDKLLSFKHFHVLTFEYF 84 (1243)
T ss_pred CCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhh-----------eeEeccCCcchHhhhhhhhhhhheeeE
Q ss_pred ccCCCEEEEEECCCeEEEEEccCCceeeeeeEEecccCceeEEEEecCCCceEEEEEeCCCeEEEEEcCCCceEEEee--
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-- 504 (1015)
Q Consensus 427 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-- 504 (1015)
+-++--++..-.|.+ ....... .+..-...|...+||.|.+ .++....+..|.+++ +.-.++....
T Consensus 85 ~~~~gDii~~~~dp~------p~e~~~e---ivG~v~nGIvaa~wS~DE~--~~cvvt~~r~il~~~-k~fd~ise~~L~ 152 (1243)
T COG5290 85 LIDEGDIIHLVNDPT------PAELEME---IVGKVSNGIVAASWSADEK--TWCVVTSTREILLFD-KYFDPISEYHLK 152 (1243)
T ss_pred EecCCcEEEEEcCCC------cccchhh---hhccccCceEEEeeccCCc--eEEEEEcCceEEEEe-ccccccchhhcc
Q ss_pred ----------------------------------------------CCCCCEEEEeecccCCccEEEEEeCCCe----EE
Q 001776 505 ----------------------------------------------GHESPVYSICPHHKENIQFIFSTATDGK----IK 534 (1015)
Q Consensus 505 ----------------------------------------------~h~~~v~~i~~~~~~~~~~l~s~~~dg~----i~ 534 (1015)
.-...=.-++|..+. .+.+.+..... ++
T Consensus 153 ~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~--~y~~v~r~Ee~prra~r 230 (1243)
T COG5290 153 KSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDT--EYNLVGRSEERPRRAFR 230 (1243)
T ss_pred hhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCc--ceeeecchhccccccee
Q ss_pred EEeCCCCCceeeecCCCCceEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEe--eCCCCCCeEEEEEeCCCCE
Q 001776 535 AWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY--HGLGKRSVGVVQFDTTKNR 612 (1015)
Q Consensus 535 vwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~--~~~~~~~i~~v~~~~~~~~ 612 (1015)
+|. +.+..-.......+.-..+.|-|.|..+++.+.|+..+..-.++=-+.|-.-..+ ....+..+..++|.-....
T Consensus 231 vys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~v 309 (1243)
T COG5290 231 VYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTV 309 (1243)
T ss_pred eec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHH
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEEecCCCCCCcceEEEcCCCCEEEEEeCCCcEEEEEccCCceeeeeecCCcccccccc
Q 001776 613 FLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692 (1015)
Q Consensus 613 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 692 (1015)
++.+-. +.+.+|-..+.......... ...+.-+.|+|....-+.-++.+.|..-...-.
T Consensus 310 lav~~~-n~~~lwttkNyhWYLK~e~~--ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k------------------ 368 (1243)
T COG5290 310 LAVAEG-NLLKLWTTKNYHWYLKVERQ--IPGISYVKWHPEEKNTLLFRDGERILRVFFSEK------------------ 368 (1243)
T ss_pred HHHhhc-ceEEEEEccceEEEEEEeec--CCCcceeeeccccCcEEEEecCCeEEEEEeehh------------------
Q ss_pred ccceecccccccccccccccccccccccccccccccCCCCCCCCcccccccccccccceeeeeeccccCCcceeEeccCC
Q 001776 693 SAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPD 772 (1015)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 772 (1015)
..-.+.......|...+..+..-.+.-..+.....|-....+.
T Consensus 369 ----------------------------------~~~~~s~~p~d~g~~~ViDGs~~l~Tplsl~n~PPPm~~~~~~--- 411 (1243)
T COG5290 369 ----------------------------------KTHHGSEYPFDNGTSYVIDGSYMLYTPLSLKNLPPPMFSVRVG--- 411 (1243)
T ss_pred ----------------------------------hhcCCcccCccCCceEEEcCceEEecchhhhcCCCCeEEEEec---
Q ss_pred CcCCccEEEEEEcCCCcEEEEeccCcEEEEeeccccCCCCCCceecccCceecCCCCCccccccCCCCCCCCCcc--EEE
Q 001776 773 NLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVP--CFA 850 (1015)
Q Consensus 773 ~~~~~~i~~l~~s~dg~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~--~l~ 850 (1015)
....|..+..+...+..++...|..+.. -|+..........+........+. .+.
T Consensus 412 --~d~NV~dv~~s~~~~~~aa~~~drli~f---------------------~~~s~e~i~k~~ef~~sef~s~v~f~~~l 468 (1243)
T COG5290 412 --FDTNVVDVFPSFAEKKGAALLRDRLIMF---------------------RWDSEEFINKRTEFLESEFDSIVLFDGFL 468 (1243)
T ss_pred --CCCceeeeccchhhhhHhhhccceeEEE---------------------ecCcHHHHHHhccccHHhhhhhccccceE
Q ss_pred EccCCCEEEEEc-CCe--EEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCcc
Q 001776 851 LSKNDSYVMSAS-GGK--ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQ 927 (1015)
Q Consensus 851 ~s~dg~~la~~s-dg~--i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~ 927 (1015)
+-.+|..++... ++. +.+.+...-.....+..-...-+++-.+..+..++..+..+|.|+-||++ ++....+. ..
T Consensus 469 ~l~~~~v~ll~dtnn~s~~~i~~~~d~~e~~k~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~e-~kl~e~~k-fp 546 (1243)
T COG5290 469 VLKSGHVFLLKDTNNESDTYITRNGDVDERKKRGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNFE-EKLYELLK-FP 546 (1243)
T ss_pred EecCceEEEEeccCCCcceEEeecCcccchhhccceeeeeeehhhHHHHHHHHhhcccceeEEEecch-hhhHHHhh-CC
Q ss_pred CCeEEEEEeCCCCEEEEEe
Q 001776 928 KRITGLAFSNTLNVLVSSG 946 (1015)
Q Consensus 928 ~~v~~l~~spdg~~l~s~s 946 (1015)
.+|.....-|--..|+.-+
T Consensus 547 ~~v~df~v~pVH~t~v~ig 565 (1243)
T COG5290 547 NGVIDFSVDPVHSTLVAIG 565 (1243)
T ss_pred CceeEEEeeccccceeeee
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=80.63 E-value=28 Score=39.76 Aligned_cols=150 Identities=9% Similarity=-0.016 Sum_probs=0.0
Q ss_pred cCCCEEEEE----cCCeEEEEeCCCCceeEEeCCCCCCeeEEEEcCCCCcEEEEEEcCCeEEEEEcccceEEEEEcCccC
Q 001776 853 KNDSYVMSA----SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928 (1015)
Q Consensus 853 ~dg~~la~~----sdg~i~iwd~~~~~~~~~l~~~~~~i~~l~~sp~d~~~la~g~~dg~v~vwd~~~~~~~~~l~~h~~ 928 (1015)
.+|-+++.. ..+...++|. .|..+..+.........+...+ +|.+++... ..++.+|+. |+.+.......+
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCc
Q ss_pred C---eEEEEEeCCCCEEEEEe--------------CCCcEEEEEccCcccccceEEEecC--------------------
Q 001776 929 R---ITGLAFSNTLNVLVSSG--------------ADSQLCVWSTDGWEKQASKFLTIPN-------------------- 971 (1015)
Q Consensus 929 ~---v~~l~~spdg~~l~s~s--------------~dg~v~vWd~~~~~~~~~~~~~~~~-------------------- 971 (1015)
. =-.+..-|+|++|+.+. .|. |..+| .+|+......+.-.-
T Consensus 188 ~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~ 265 (477)
T PF05935_consen 188 YYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSG 265 (477)
T ss_dssp EE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SS
T ss_pred ccccccccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCC
Q ss_pred -----CCccccCCceEEEEcc-CCCEEEEE-eCCeEEEEEcCCceEeccCC
Q 001776 972 -----GRTASALADTRVQFHL-DQTHLLAV-HETQIAIYEAPKLECLKQVG 1015 (1015)
Q Consensus 972 -----~~~~~~~~v~~l~fs~-dg~~l~~~-~d~~i~vwd~~~g~~l~~~~ 1015 (1015)
-| +.++.+.+ ++..|+++ .-..|...|..+++....+|
T Consensus 266 ~~~DW~H------~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 266 GGRDWLH------INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TTSBS--------EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCCccc------cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=80.59 E-value=2.3 Score=39.05 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=39.8
Q ss_pred cchhHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcccccccCHHHHHHHHHhhccccc
Q 001776 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENF 124 (1015)
Q Consensus 67 ~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1015)
++.. ++|.++-+.||+|+..+...+|..|+.+--.-+.....++.++|..+......
T Consensus 36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l 92 (142)
T PF04494_consen 36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHL 92 (142)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHH
Confidence 3444 99999999999999999999999999975444443345666777655544333
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.16 E-value=1.2e+02 Score=34.83 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=71.5
Q ss_pred EEEEEeCC-----CeEEEEEcCCCceEEEeeC---CCCC-EEEEeecccCCccEEEEEeCCC-----eEEEEeCCCCCce
Q 001776 479 SVVTCGED-----RVIKVWDAVTGTKQYIFEG---HESP-VYSICPHHKENIQFIFSTATDG-----KIKAWLYDNLGSR 544 (1015)
Q Consensus 479 ~l~s~s~d-----g~v~vwd~~~~~~~~~~~~---h~~~-v~~i~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~ 544 (1015)
+++.|+.+ ..+.++|+.+.+....-.. .... -.+++. . ++++.+.|+.++ .+..||+.+..-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 55666654 3577888877644321110 0011 111221 1 225666666543 3566776653211
Q ss_pred eeec---CCCCc-eEEEEECCCCCEEEEEeeCCCCCceEEEEeCCCCeeeEEeeC---CCCCCeEEEEEeCCCCEEEEEe
Q 001776 545 VDYD---APGHS-STMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHG---LGKRSVGVVQFDTTKNRFLAAG 617 (1015)
Q Consensus 545 ~~~~---~~~~~-i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~---~~~~~i~~v~~~~~~~~l~~~~ 617 (1015)
.... ..... -..++ .-+++.++.++.++.....+.+||+.+.+....-.. .......++ ..-+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~-~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLE-VVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEE-EECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECC
Confidence 1100 00001 11122 235667777665443335689999988765443221 111011122 223456677777
Q ss_pred CC--------------CcEEEEeCCCCcee
Q 001776 618 DE--------------FMIKFWDMDNVNLL 633 (1015)
Q Consensus 618 ~d--------------g~i~vwd~~~~~~~ 633 (1015)
.+ ..+.+||+.+.+..
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEE
Confidence 42 24788898877654
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=80.15 E-value=57 Score=37.85 Aligned_cols=152 Identities=12% Similarity=0.008 Sum_probs=85.2
Q ss_pred CccEEEEccCCCEEEEEc-CCeEEEEeCCCCceeEE-eCCCCCCeeEEEEcCCCCcEEEEEEcCC--eEEEEEcc-cceE
Q 001776 845 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDS--SIQIYNVR-VDEV 919 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~-l~~~~~~i~~l~~sp~d~~~la~g~~dg--~v~vwd~~-~~~~ 919 (1015)
.+.+++.|++++.+|... ++ -.+|-...+..... +. ....+.-.|.+ ++ .+-+...+. .|..+.-. +++.
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~-~~l~~~~~g~~~~~~~~--g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR-TTLYTVSPGQPARALTS--GSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCC-cEEEEecCCCcceeeec--CCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccc
Confidence 678899999999999887 44 34443322333332 33 23467778888 66 555554433 44444322 2111
Q ss_pred ------EEEEcCccC-CeEEEEEeCCCCEEEE-EeCCCc--EEEEEcc---Ccccccce-EEEecCCCccccCCceEEEE
Q 001776 920 ------KTKLKGHQK-RITGLAFSNTLNVLVS-SGADSQ--LCVWSTD---GWEKQASK-FLTIPNGRTASALADTRVQF 985 (1015)
Q Consensus 920 ------~~~l~~h~~-~v~~l~~spdg~~l~s-~s~dg~--v~vWd~~---~~~~~~~~-~~~~~~~~~~~~~~v~~l~f 985 (1015)
........+ .|+.+..|+||-.++. ...||. |.|=-+. .|+..... .+.. +. ...+.++.|
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~--~~---~~~~~sl~W 493 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL--AA---DSDADTGAW 493 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec--cc---CCCcceeEE
Confidence 111122334 4999999999987665 434555 6654443 33311111 1111 11 146889999
Q ss_pred ccCCCEEEEE----eCCeEEEEEcC
Q 001776 986 HLDQTHLLAV----HETQIAIYEAP 1006 (1015)
Q Consensus 986 s~dg~~l~~~----~d~~i~vwd~~ 1006 (1015)
..++.+++.+ .+..+++..+.
T Consensus 494 ~~~~sl~V~~~~~~~~~~~~~v~v~ 518 (573)
T PRK13614 494 VGDSTVVVTKASATSNVVPELLSVD 518 (573)
T ss_pred cCCCEEEEEeccCCCcceEEEEEeC
Confidence 9999987773 23445666663
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1015 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-11 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 1e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 1e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 6e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 6e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-07 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-05 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 2e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 8e-05 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 3e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 8e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1015 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-15 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.004 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.004 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-08 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.003 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 9e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.002 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 7e-17
Identities = 48/345 (13%), Positives = 100/345 (28%), Gaps = 28/345 (8%)
Query: 342 TDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401
++ + +L+ S V + F + L G N ++ V +A S
Sbjct: 48 PREIDVELHKSLDHTSVVCCVKFSNDGE-YLATGCN-KTTQVYRVSDGSLVARLSDDSAA 105
Query: 402 LGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEA 461
L S S + V +SPDG ++ ++ +
Sbjct: 106 NKDPE-NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL----- 159
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
+ + Y +V+ DR +++WD TG +
Sbjct: 160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK- 218
Query: 522 QFIFSTATDGKIKAWLYDNLGSRVDYDAP-----GHSS--TMMAYSADGARLFSCGTNK- 573
+I + + D ++ W + D+ GH + ++ DG + S ++
Sbjct: 219 -YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277
Query: 574 ------EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDM 627
+ + + + K V V L+ + + FWD
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
Query: 628 DNVNLLASIDADGG----LQASPCIRFNKEGILLAVSTNDNGIKI 668
+ N L + + + E + A + D +I
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 2e-15
Identities = 25/188 (13%), Positives = 63/188 (33%), Gaps = 27/188 (14%)
Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
+ P + G+ V +W+ + + + + + + SV
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLV------------ERLDSENESGTGHKDSV 257
Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHV---------GSVNDLAFS 472
V+++ DG V L+ + + + V +A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317
Query: 473 YPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI----QFIFSTA 528
++ + ++ +DR + WD +G + +GH + V S+ + ++ + +
Sbjct: 318 QNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375
Query: 529 TDGKIKAW 536
D K + W
Sbjct: 376 GDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (153), Expect = 4e-11
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 20/143 (13%)
Query: 832 LMTNDISDTNPEDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAA--- 887
L + + S T +D+V +++ V+S S + L+N+ + P
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 888 ---------TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938
+A ++ I G +D + ++ + L+GH+ + +A +N
Sbjct: 303 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
Query: 939 L------NVLVSSGADSQLCVWS 955
NV + D + +W
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 2e-09
Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 17/162 (10%)
Query: 337 QSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKS 396
++ + + L +V S+ F Q +V G+ V LW + + +
Sbjct: 235 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH 456
+ + V V + + V + G+ L
Sbjct: 294 TPNSGTCEVTY-------IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-- 344
Query: 457 LEIEAHVGSVNDLAFSY-----PNKQLSVVTCGEDRVIKVWD 493
++ H SV +A + P + T D ++W
Sbjct: 345 -MLQGHRNSVISVAVANGSSLGPEYNV-FATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.0 bits (115), Expect = 2e-06
Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV-------RVDEVKT 921
+ + + T +A P D IA G D ++++++ R+D
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 248
Query: 922 KLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALAD- 980
GH+ + + F+ +VS D + +W+ ++ + +
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308
Query: 981 ---TRVQFHLDQTHLLAVHET-QIAIYEAPKLECLK 1012
V + ++L+ + + ++ L
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 344
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 20/183 (10%), Positives = 51/183 (27%), Gaps = 24/183 (13%)
Query: 847 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPP-------AATFLAFHPQDNN 898
+ Y+ + S + +++ T + + + F D
Sbjct: 209 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQ 267
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLKG------------HQKRITGLAFSNTLNVLVSSG 946
+ G D S++++N++ K+ K H+ + +A + ++S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 947 ADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYEA 1005
D + W L S + + + I++
Sbjct: 328 KDRGVLFWDKKSGNPLLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Query: 1006 PKL 1008
K+
Sbjct: 386 KKI 388
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.6 bits (197), Expect = 1e-16
Identities = 25/141 (17%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 398 KVWEL--GACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
K+W++ G C + + +N + + P+G F L+ EL
Sbjct: 209 KLWDVREGMCRQTFT-----GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
+ + + + ++FS + L + +D VWDA+ + + GH++ V +
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 516 HHKENIQFIFSTATDGKIKAW 536
+ + + + D +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.0 bits (193), Expect = 3e-16
Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 9/163 (5%)
Query: 796 SNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855
+ V L P +G + + +LW G+ + T E + N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGAC--DASAKLWDVREGMCRQ---TFTGHESDINAICFFPNG 238
Query: 856 SYVMSASGG---KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIY 912
+ + S ++ + T ++F ++ G +D + ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297
Query: 913 NVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
+ + L GH R++ L ++ + + DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.3 bits (186), Expect = 3e-15
Identities = 37/293 (12%), Positives = 85/293 (29%), Gaps = 31/293 (10%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
+ + +M + + LLV + G +++W+ + ++ + + C+ + +
Sbjct: 56 AKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLY---------------------TYHGGDELRN 455
+++ V S+ + T D
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
+ + ++ S V+ D K+WD G + F GHES + +IC
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234
Query: 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFSCGTNK 573
N + + D + + + Y T +++S G L + +
Sbjct: 235 FPNGN--AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Query: 574 EGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWD 626
W+ + G V + + +K W+
Sbjct: 293 N----CNVWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 3e-11
Identities = 43/316 (13%), Positives = 89/316 (28%), Gaps = 54/316 (17%)
Query: 396 SFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRN 455
+ + +G M + +L + A + + W D L A + ++ + +++
Sbjct: 34 TNNIDPVGRIQMRTRRTLRG-HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH- 91
Query: 456 HLEIEAHVGSVNDLAFSYPNKQLSVVT--------------------------------- 482
I V A++ ++
Sbjct: 92 --AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 483 ----------CGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK 532
D +WD TG + F GH V S+ + S A D
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF--VSGACDAS 207
Query: 533 IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592
K W R + + + +G + + + + ++ +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQELMTY 264
Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
H + V F + LA D+F WD + + C+
Sbjct: 265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTD 322
Query: 653 EGILLAVSTNDNGIKI 668
+G+ +A + D+ +KI
Sbjct: 323 DGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.7 bits (130), Expect = 2e-08
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQL 951
D + G D+S ++++VR + GH+ I + F N + D+
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 952 CVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHET-QIAIYEAPKLEC 1010
++ ++ + T V F LLA ++ +++A K +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 1011 LK 1012
Sbjct: 305 AG 306
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 5e-07
Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 11/130 (8%)
Query: 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI--YNVRVDEVKTKL 923
L+++ TF + F P + N A G +D++ ++ + +
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 924 KGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRV 983
IT ++FS + +L++ D VW ++ + G +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR-----AGVLAGHDNRVSC---L 318
Query: 984 QFHLDQTHLL 993
D +
Sbjct: 319 GVTDDGMAVA 328
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 0.004
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 892 FHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQL 951
D + I + +R + L+GH +I + + +LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 952 CVWSTDGWE 960
+W +
Sbjct: 80 IIWDSYTTN 88
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.0 bits (193), Expect = 2e-16
Identities = 32/188 (17%), Positives = 58/188 (30%), Gaps = 8/188 (4%)
Query: 350 VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAV-KSFKVWELGACSMP 408
V T M L+ +N V +W V ++E A + + P
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 409 LQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVND 468
+ S G + ++ G L + H V
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRG 252
Query: 469 LAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528
+ F K + ++C +D+ ++VWD HE V S+ H ++ + +
Sbjct: 253 VLFHSGGKFI--LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP--YVVTGS 308
Query: 529 TDGKIKAW 536
D +K W
Sbjct: 309 VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.0 bits (180), Expect = 1e-14
Identities = 40/309 (12%), Positives = 104/309 (33%), Gaps = 15/309 (4%)
Query: 647 CIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFG 706
+ F+ ++ ++ D IK+ + + RT++ T V + + +
Sbjct: 22 RVIFHPVFSVMVSASEDATIKVW-DYETGDFERTLKGHT---DSVQDISFDHSGKLLASC 77
Query: 707 SANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCR 766
SA+ + + M G ++ + + + + + + K+ E+ +
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 767 SLRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQ 826
+ M G I + +++ ++W E + + + +
Sbjct: 138 TFTGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS- 192
Query: 827 PPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPP 885
+ S + K +++S S I ++++ T + T +
Sbjct: 193 ----WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 886 AATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSS 945
+ FH I +D ++++++ + L H+ +T L F T +V+
Sbjct: 249 WVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 307
Query: 946 GADSQLCVW 954
D + VW
Sbjct: 308 SVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.2 bits (178), Expect = 2e-14
Identities = 40/216 (18%), Positives = 76/216 (35%), Gaps = 11/216 (5%)
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
+ H V + F P + +V+ ED IKVWD TG + +GH V I H
Sbjct: 13 LSGHRSPVTRVIFH-PVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
+ S D IK W + H+ + ++ +G + S +K + +
Sbjct: 71 GKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
V+ +T+ G + V +V+ + + ++ ++ W + A +
Sbjct: 129 EVQTGY----CVKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674
CI + E ++S + G
Sbjct: 184 HRH--VVECISWAPESSYSSISEATGSETKKSGKPG 217
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.6 bits (166), Expect = 6e-13
Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 23/167 (13%)
Query: 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV--- 481
+ DGTL + V ++ + E+ H V ++++ + S+
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEAT 206
Query: 482 ---------------TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
+ D+ IK+WD TG GH++ V + H FI S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FILS 264
Query: 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573
A D ++ W Y N +A H T + + + + ++
Sbjct: 265 CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.9 bits (146), Expect = 2e-10
Identities = 48/300 (16%), Positives = 102/300 (34%), Gaps = 26/300 (8%)
Query: 408 PLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVN 467
P + +LS + + V RV++ P ++ A + ++ Y GD R ++ H SV
Sbjct: 8 PEKYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQ 63
Query: 468 DLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFST 527
D++F + K L+ + + + + H SI P+ I S
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSA 119
Query: 528 ATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG 587
+ D IK W + M+ + DG + SC ++ ++V E +
Sbjct: 120 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 179
Query: 588 AVK---------------RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632
++ + L+ + IK WD+
Sbjct: 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 239
Query: 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVA 692
L ++ G + F+ G + +D +++ + R ++T+ + + +
Sbjct: 240 LMTL--VGHDNWVRGVLFHSGGKFILSCADDKTLRVW-DYKNKRCMKTLNAHEHFVTSLD 296
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 5e-09
Identities = 23/172 (13%), Positives = 54/172 (31%), Gaps = 28/172 (16%)
Query: 843 EDAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ------ 895
+ V +++ + + S S + ++ + T + +++ P+
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202
Query: 896 -------------DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVL 942
+ G D +I++++V L GH + G+ F + +
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 943 VSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLA 994
+S D L VW + L T + FH +++
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKT--LNAHEHFV------TSLDFHKTAPYVVT 306
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.5 bits (132), Expect = 1e-08
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 415 SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYP 474
+ V V++ G + ++ Y ++ + AH V L F
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFH-K 299
Query: 475 NKQLSVVTCGEDRVIKVWD 493
VVT D+ +KVW+
Sbjct: 300 TAPY-VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.1 bits (105), Expect = 2e-05
Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 10/179 (5%)
Query: 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDA 549
K W ++Y GH SPV + H + + S + D IK W Y+ +
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYET--GDFERTL 55
Query: 550 PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTT 609
GH+ ++ S D + + + L ++ E H +V V
Sbjct: 56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH---DHNVSSVSIMPN 112
Query: 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
+ ++A + IK W++ + + G + +R N++G L+A +ND +++
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.7 bits (104), Expect = 3e-05
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 920 KTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964
K L GH+ +T + F +V+VS+ D+ + VW + + + +
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.2 bits (87), Expect = 0.004
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGL 933
T + FHP +++ ED++I++++ + + LKGH + +
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.5 bits (168), Expect = 5e-13
Identities = 48/356 (13%), Positives = 101/356 (28%), Gaps = 25/356 (7%)
Query: 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLS 479
++ W+ D T + + H VH+Y G ++ H E++ H G V + ++ + ++
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYD 539
VTCG DR VW T + + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 540 NLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKR 599
S D + ++ V+
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 600 -----------------SVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGL 642
V V F +R + + D D +A++ ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244
Query: 643 QASPCIRFNKEGILLAVSTNDNG-IKILANADGIRLLRTVESRTFDASRVASAAIVKAPA 701
+ F E L+A + + +A G +S+ A +
Sbjct: 245 -PLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 303
Query: 702 IGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-RIWKL 756
+ S+ + G + ++ +S + ++ IW +
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHKNSVSQISV-LSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 2e-10
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--TKLKGHQKRITGLAFSNTLNVLVSS 945
+ A++ D IAI + + IY ++ +LK H ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 946 GADSQLCVWSTDGWEKQ 962
G D VW+ G +
Sbjct: 70 GTDRNAYVWTLKGRTWK 86
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 33/379 (8%), Positives = 85/379 (22%), Gaps = 25/379 (6%)
Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
YH + ++ + + + + ++ + + + +
Sbjct: 2 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 653 EGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANV 712
+ + D + V R A+R A + GS ++
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121
Query: 713 GTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKS-----RIWKLTEITEPSQCRS 767
E + S + + S RI+ +
Sbjct: 122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
Query: 768 LRLPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQP 827
+ + ++ G + + +A W ++ L
Sbjct: 182 TPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTV----------CLADA 230
Query: 828 PSGILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAA 887
+ + S+T P + S V + LF + +F
Sbjct: 231 DKKMAVATLASETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVP 287
Query: 888 TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS----NTLNVLV 943
+ D H+ ++ ++ +
Sbjct: 288 KQSS-QRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFC 345
Query: 944 SSGADSQLCVWSTDGWEKQ 962
++G D + +W E
Sbjct: 346 TTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 36/361 (9%), Positives = 89/361 (24%), Gaps = 46/361 (12%)
Query: 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY 417
+ ++ + + + N +V ++E + + V K ++
Sbjct: 9 PISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELK-----------------EH 50
Query: 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
V V W+PD + +++T G + + + + K
Sbjct: 51 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110
Query: 478 LSVVTCGEDRVIKVWDA-VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
+ ++I + S V S+ H + S D K + +
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS--CDFKCRIF 168
Query: 537 LYDNLGSRVDYDAPGHSSTMMA--------------YSADGARLFSCGTNKEGESYLVEW 582
S M + + S +S +
Sbjct: 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 228
Query: 583 NESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN-------VNLLAS 635
+ + T + T++ +AAG + + D+ L
Sbjct: 229 DADKKMAVATLASETLPL--LAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDV 286
Query: 636 IDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA--DGIRLLRTVESRTFDASRVAS 693
+ RF + + L + + + + + S+ +
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 694 A 694
Sbjct: 347 T 347
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 9e-11
Identities = 49/313 (15%), Positives = 95/313 (30%), Gaps = 25/313 (7%)
Query: 371 LLVVGTNMGDVMLWEVGSRERIAV---KSFKVWEL----GACSMPLQASLSSDYTASVNR 423
+V G++ + +W + + + + VW + A
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 88
Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDEL-----RNHLEIEAHVGSVNDLAFSYPNKQL 478
+ + G V D + +
Sbjct: 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148
Query: 479 SVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLY 538
VV+ D ++KVWD T T + +GH + VYS+ + S + D I+ W
Sbjct: 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRVWDV 204
Query: 539 DNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGK 598
+ + GH S L S + + W+ G +T G K
Sbjct: 205 ET--GNCIHTLTGHQSLTSGMELKDNILVSGNADST----VKIWDIKTGQCLQTLQGPNK 258
Query: 599 RSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASI---DADGGLQASPCIRFNKEGI 655
V KN + + D+ +K WD+ + ++ ++ G IR + +
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318
Query: 656 LLAVSTNDNGIKI 668
+ AV + + +
Sbjct: 319 VCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 1e-10
Identities = 34/210 (16%), Positives = 66/210 (31%), Gaps = 20/210 (9%)
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
++ H V + ++ V+ +D +KVW AVTG GH V+S
Sbjct: 12 LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-- 66
Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
D I + D + + T+ +++ + S
Sbjct: 67 -----------DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
+ + H L V R ++ +FM+K WD + L ++
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
+ +GI + + D I++
Sbjct: 176 ----HTNRVYSLQFDGIHVVSGSLDTSIRV 201
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 39/276 (14%), Positives = 73/276 (26%), Gaps = 34/276 (12%)
Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
V ++ + + + V + + M A++
Sbjct: 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148
Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481
V + D + V + L+T G L+ + VV
Sbjct: 149 RVVSGAYDFMVK-VWDPETETCLHTLQGHTNRVYSLQFDGIH----------------VV 191
Query: 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-LYDN 540
+ D I+VWD TG + GH+S + + S D +K W +
Sbjct: 192 SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTG 247
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL---- 596
+ H S + + + + + + W+ G R L
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG----TVKLWDLKTGEFIRNLVTLESGG 303
Query: 597 GKRSVGVVQFDTTKNRFLAAGD----EFMIKFWDMD 628
V ++ TK E + D D
Sbjct: 304 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 6e-06
Identities = 18/128 (14%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 840 TNPEDAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 898
T + D+ ++S + + ++++ T + + T P + + + N
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271
Query: 899 IIAIGMEDSSIQIYNVRVDEVKTKLK-----GHQKRITGLAFSNTLNVLVSSGAD----S 949
+ +D ++++++++ E L G + + SNT V + +
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Query: 950 QLCVWSTD 957
+L V D
Sbjct: 332 KLLVLDFD 339
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 2e-10
Identities = 32/336 (9%), Positives = 89/336 (26%), Gaps = 37/336 (11%)
Query: 350 VMTLNQG--SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSM 407
++ + Q + + P + LL++ + G + +++ ++ A ++
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKF--------------DIQAKNV 47
Query: 408 PLQASLSSDYTASVNRVMWSPD-GTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
L SL Y + + + V + + G + EA++G
Sbjct: 48 DLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105
Query: 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
+ + + + + + V + N +
Sbjct: 106 RICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165
Query: 527 TATDGKIKAWLYDNLGS--------------RVDYDAPGHSSTMMAYSADGARLFSCGTN 572
+ +++ + R P S DG +
Sbjct: 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD 225
Query: 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNL 632
+ + + V ++F AG + +I W++
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285
Query: 633 LASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
+ + ++ +L ++T+D+ K
Sbjct: 286 IKNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 14/152 (9%)
Query: 362 MDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASV 421
+ P +Q + G V + + S + ++ V
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA----FRCHRLNLKDTNLAYPV 254
Query: 422 NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVV 481
N + +SP A S I+ + +++N A + + + + L
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF----AKFNEDSVVKIACSDNIL--C 308
Query: 482 TCGEDRVIKVWDAVTGTKQYIFEGHESPVYSI 513
D K A+ T E + S +Y I
Sbjct: 309 LATSDDTFKTNAAIDQT----IELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK---GHQKRITGLAFSNTLNVLVSSG 946
+ P +++ I D S+ +Y + L ++ + F + ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 947 ADSQLCVW 954
+
Sbjct: 76 TVQGEILK 83
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTR 982
+ + I+ + + ++L+ + D L V+ D K ++
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN--- 63
Query: 983 VQFHLDQTHLLA 994
F + +
Sbjct: 64 --FIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 26/234 (11%), Positives = 55/234 (23%), Gaps = 32/234 (13%)
Query: 800 HKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVM 859
+ + + + + N+S V
Sbjct: 114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQ 173
Query: 860 SASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNV----- 914
L +A P++ A D + +
Sbjct: 174 -----WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228
Query: 915 ----------RVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEK--Q 962
R + K + + FS L ++G+D + W+ +K
Sbjct: 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
Query: 963 ASKFLTI------PNGRT-ASALADTRVQFHLDQTHLLAVHETQIAI---YEAP 1006
+KF + A +D + + + ++ + I I YE P
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSIYIIFDYENP 342
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 2e-10
Identities = 41/342 (11%), Positives = 94/342 (27%), Gaps = 31/342 (9%)
Query: 338 SSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSF 397
SS S ++ T + + + P + V + G + V F
Sbjct: 1 SSISLKEIIPPQPSTQR--NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF 58
Query: 398 KVWELGACSMPLQASLSSDYTASVNRVMWSP--DGTLFGVAYSKHIVHLYTYHGGDE--- 452
+ ++ V V +SP V ++ + E
Sbjct: 59 ----------------TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNS 102
Query: 453 --LRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
+ E + G ++D+++ + ++L VV G D +G GH +
Sbjct: 103 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRI 162
Query: 511 YSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSS--TMMAYSADGARLFS 568
+ ++ + + S D S + +S D
Sbjct: 163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222
Query: 569 CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628
+ S + + + + + + +F G + I+ WD+
Sbjct: 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVT 281
Query: 629 NVNLLASIDADGGLQASPCIRF--NKEGILLAVSTNDNGIKI 668
+ D + + G ++++S D +
Sbjct: 282 TSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNF 322
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 1e-05
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 480 VVTCGEDRVIKVWDAVTGT--KQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
T G D I+VWD T +++ + + + N I S + DG + +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 20/126 (15%), Positives = 46/126 (36%), Gaps = 10/126 (7%)
Query: 876 TMTTFMPPPPA-----ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--TKLKGHQK 928
++ +PP P+ T L++ P N I + + ++ + +V + GH
Sbjct: 4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63
Query: 929 R-ITGLAFSNTLN--VLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQF 985
+T + FS L S ++ VW ++ S + + + A + + +
Sbjct: 64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123
Query: 986 HLDQTH 991
+
Sbjct: 124 DFEGRR 129
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 3/94 (3%), Positives = 23/94 (24%), Gaps = 2/94 (2%)
Query: 400 WELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEI 459
++ + + + D F + + ++ ++ +
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK-WTL 291
Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493
+ + +++ D + ++
Sbjct: 292 DKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 5e-04
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK 928
F P A D+ A D++I++++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 929 RITGLAFS---NTLNVLVSSGADSQLCVW 954
++ ++S D L +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 3e-10
Identities = 34/346 (9%), Positives = 84/346 (24%), Gaps = 38/346 (10%)
Query: 325 ILPVAYTPQSLGQSSYSTDDLPKTV--VMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVM 382
+ PV + P +L +P+ + TLN G V ++ + + G G V
Sbjct: 23 MQPVPFPPDALIGPG-----IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGK--GCVK 75
Query: 383 LWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442
+W++ P+ + + PDG V +
Sbjct: 76 VWDISH--------------PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121
Query: 443 HLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502
++ + + + +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-----FSCCSDGNIAVWDLHNQTLV 176
Query: 503 FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSAD 562
+ + C + +++ D +++W +D + Y
Sbjct: 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ-IFSLGYCPT 235
Query: 563 GARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMI 622
G L + E V + L ++F F++ G + ++
Sbjct: 236 GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLL 289
Query: 623 KFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
W + + + + + + D +
Sbjct: 290 NAWRTPYGASIFQSKESSSVL---SCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 8e-10
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPN 475
D+T+ + + + P G V V + + + ++ H V L F+Y
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLHLHESCVLSLKFAYCG 277
Query: 476 KQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKA 535
K V+ G+D ++ W G + S V S + ++I + + D K
Sbjct: 278 KWF--VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATV 332
Query: 536 W 536
+
Sbjct: 333 Y 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 2e-08
Identities = 7/112 (6%), Positives = 21/112 (18%), Gaps = 2/112 (1%)
Query: 844 DAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIG 903
+ ++ + L F
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVST 283
Query: 904 MEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
+D+ + + + + S +V+ D + V+
Sbjct: 284 GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 7e-07
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC 483
+ ++ G F ++++ + G + SV S + + +VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDIS-VDDKY-IVTG 324
Query: 484 GEDRVIKVWD 493
D+ V++
Sbjct: 325 SGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.002
Identities = 23/159 (14%), Positives = 49/159 (30%), Gaps = 12/159 (7%)
Query: 847 PCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED 906
C +S + + + + + L + P + +
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA--VGME 244
Query: 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKF 966
SS K +L H+ + L F+ VS+G D+ L W T
Sbjct: 245 SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-- 302
Query: 967 LTIPNGRTASALADTRVQFHLDQTHLLAV-HETQIAIYE 1004
+ ++S L+ +D +++ + + +YE
Sbjct: 303 ----SKESSSVLS---CDISVDDKYIVTGSGDKKATVYE 334
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 7e-10
Identities = 44/286 (15%), Positives = 79/286 (27%), Gaps = 67/286 (23%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENI 521
V L + ++++ V+ D IK+WD T + I GH V + + I
Sbjct: 14 TSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69
Query: 522 QFIFSTA------------------------------------TDGKIKAWLYDNLGSRV 545
+ D I W +
Sbjct: 70 TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129
Query: 546 DYDA-PGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 604
GH + + D + S ++ + WN S RT +G G+
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDR----TIKVWNTSTCEFVRTLNG---HKRGIA 182
Query: 605 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664
++ + I+ WD++ L ++ L + + D
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDG 238
Query: 665 GIKI--------LANADGIRLLRT-------VESRTFDASRVASAA 695
IK+ G LRT V FD ++ S++
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 6e-07
Identities = 26/151 (17%), Positives = 40/151 (26%), Gaps = 25/151 (16%)
Query: 395 KSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELR 454
++ KVW C + + L S + + L+ G LR
Sbjct: 158 RTIKVWNTSTCEF-----VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 212
Query: 455 NHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY---------IFEG 505
+L +V+ D IKVWD V
Sbjct: 213 VL-------EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 506 HESPVYSICPHHKENIQFIFSTATDGKIKAW 536
H V+ + I S++ D I W
Sbjct: 266 HSGRVFRLQFDEF----QIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 1e-06
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 15/131 (11%)
Query: 834 TNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAF 892
T + T L D V+S S I L+++ + +
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223
Query: 893 HPQDNNIIAIGMEDSSIQIYNVRVDEVKTK---------LKGHQKRITGLAFSNTLNVLV 943
DN I G D I+++++ L H R+ L F +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IV 281
Query: 944 SSGADSQLCVW 954
SS D + +W
Sbjct: 282 SSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 480 VVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW--- 536
VV+ D I++WD G + EGH + + + + I S A DGKIK W
Sbjct: 191 VVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 537 ----LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNK 573
G+ HS + D ++ S +
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDD 287
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 3e-04
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 19/133 (14%)
Query: 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTAS 420
+ + L+V G++ + LW++ + V + + +S Y
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 421 VNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV 480
+ +V + + H G V L F + +
Sbjct: 240 I-KVWDLVAALDPRAPAGTLCLR--------------TLVEHSGRVFRLQFD----EFQI 280
Query: 481 VTCGEDRVIKVWD 493
V+ D I +WD
Sbjct: 281 VSSSHDDTILIWD 293
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 1e-09
Identities = 9/79 (11%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK-QYIFEGHESPVYSICPHHKEN 520
H +++ + Y + + + G + +++ +G ++S+ K
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335
Query: 521 IQFIFSTATDGKIKAWLYD 539
+ + DG+ + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (135), Expect = 6e-09
Identities = 44/369 (11%), Positives = 102/369 (27%), Gaps = 21/369 (5%)
Query: 590 KRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649
+ T G + +QF+ N + D+ MI+ +D N L + G ++
Sbjct: 5 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDG--GVWALK 60
Query: 650 FNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSAN 709
+ GIL++ ST+ + + T + +K G+ +
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120
Query: 710 ANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLR 769
+ + + + ++ S
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 770 LPDNLTAMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPS 829
+ + + +Y SG ++ H+ + ++T + + +L
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 830 GILMTNDISDTNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 889
G + + + V A F +
Sbjct: 241 GHTALVGLLRLSDKFLVSAAADGSI--------------RGWDANDYSRKFSYHHTNLSA 286
Query: 890 LAFHPQDNNIIAIGMEDSSIQIYNVRVDE-VKTKLKGHQKRITGLAFSNTLNVLVSSGAD 948
+ +NI+ G ++ IYN+R + V + +I + F ++ + D
Sbjct: 287 ITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD 344
Query: 949 SQLCVWSTD 957
Q + D
Sbjct: 345 GQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHH 517
+ H+ SV + + + +T +D++I+V+D++ GH+ V+++ H
Sbjct: 8 LRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 3e-06
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 8/151 (5%)
Query: 407 MPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSV 466
+P + +L + SV + ++ +Y L ++ H G V
Sbjct: 2 VPQRTTLRG-HMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGV 56
Query: 467 NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFS 526
L +++ +V+ DR ++VWD G ++FEGH S V + +NI++I +
Sbjct: 57 WALKYAHGGI---LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 113
Query: 527 TATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557
+ D + W S D+ +
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 896 DNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
++N + G +D I++Y+ + +L GH + L +++ +LVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 956 TDGWEKQASKFLTIPNGRTASALADTRVQFHLDQTHLLAVHETQIAIYEAPKLECLKQVG 1015
R V++ + + + + +++ PK + G
Sbjct: 81 IKKGCCTHVFEGHNSTVRC-----LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.002
Identities = 35/376 (9%), Positives = 87/376 (23%), Gaps = 82/376 (21%)
Query: 346 PKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGAC 405
P+ + + S + + F ++ G + + +++ +++ +
Sbjct: 3 PQRTTLRGHMTSVITCLQFEDN---YVITGADDKMIRVYDSINKKFLLQ----------- 48
Query: 406 SMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGS 465
S + V + ++ G L S + E H +
Sbjct: 49 --------LSGHDGGVWALKYAHGGILV----SGSTDRTVRVWDIKKGCCTHVFEGHNST 96
Query: 466 VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK------------QYIFEGHESPVYSI 513
V L +VT D + VW + + +
Sbjct: 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
Query: 514 CPHHKENI-------QFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARL 566
H ++ + S + D + W + Y + R
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216
Query: 567 FSCGTNK----------------------------------EGESYLVEWNESEGAVKRT 592
S + + R
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276
Query: 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652
+ + F + + L +G E +++ + L+ + + F
Sbjct: 277 FSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LKDADQIWSVNFKG 334
Query: 653 EGILLAVSTNDNGIKI 668
+ ++ AV D +
Sbjct: 335 KTLVAAVE-KDGQSFL 349
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 7e-09
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 462 HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF-EGHESPVYSICPHHKEN 520
H ++ L+ S + + + + + I WD TG +F + H + + I K +
Sbjct: 11 HNKAITALSSS-ADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 521 IQFIFS 526
+ +
Sbjct: 69 LFTVSW 74
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.8 bits (101), Expect = 7e-05
Identities = 11/47 (23%), Positives = 16/47 (34%)
Query: 918 EVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQAS 964
+ GH K IT L+ S L S+ A+ + W
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 25/285 (8%), Positives = 66/285 (23%), Gaps = 36/285 (12%)
Query: 418 TASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477
++ + S DG A ++ ++ + G R + H + + +
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITGIKTTSKGDL 69
Query: 478 LSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTAT-------- 529
+V +V+ + + + + S + +I
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 530 --------------------------DGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563
+ S + H + + + +
Sbjct: 130 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN 189
Query: 564 ARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIK 623
F T++ + + V V + R + +
Sbjct: 190 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249
Query: 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKI 668
W+M+ + I +S + + D+ IK
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKF 294
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 4e-04
Identities = 13/58 (22%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 481 VTCGEDRVIKVWDAVTGTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
T D + VW+ + I H + E I S D IK W
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 5e-04
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 425 MWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG 484
WSPD + V ++ + + ++ + SVN + + + V+ G
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTI--VSAG 287
Query: 485 EDRVIKVWD 493
+D IK W+
Sbjct: 288 QDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 7e-04
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 866 ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDE---VKTK 922
T A DN +A G D+S+ ++N+ + K
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWS 955
+ + + N +VS+G DS + W+
Sbjct: 265 GAHAMSSVNSVIWLNE-TTIVSAGQDSNIKFWN 296
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 38/359 (10%), Positives = 85/359 (23%), Gaps = 56/359 (15%)
Query: 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430
++V ++ + +V S + S M +PD
Sbjct: 10 YMIVTNYPNNLHVVDVASDT------------------VYKSCVMPDKFGPGTAMMAPDN 51
Query: 431 TLFGVAYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED 486
V + + + L T S+ A S K++
Sbjct: 52 RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQ 111
Query: 487 RV----------IKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
R+ ++V+ G + P ++ + K+
Sbjct: 112 RLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVK 171
Query: 537 LYD-----NLGSRVDYDAPGHSSTMMAYSADGARLFSC-------------GTNKEGESY 578
L + FS +
Sbjct: 172 TGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 231
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA 638
+ + G K+ G + +D+ L+ + +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRS-PKDPNQIYGVLNRLAKYDLKQRKLIKAANL 290
Query: 639 DGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697
D C+ F+K+G L + N + + N D + ++ ++ D S + +
Sbjct: 291 DHTYY---CVAFDKKGDKLYLGGTFNDLAVF-NPDTLEKVKNIKLPGGDMS-TTTPQVF 344
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.7 bits (117), Expect = 9e-07
Identities = 37/377 (9%), Positives = 81/377 (21%), Gaps = 42/377 (11%)
Query: 604 VQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTND 663
+ + D+ + + S + V N
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNH 60
Query: 664 NGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPA 723
G + D + + S G A N L +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120
Query: 724 AAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVS--- 780
+ ++ + E R+ +P + MR +
Sbjct: 121 PPRL------------------------EVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 156
Query: 781 RLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDT 840
L + + + + R + W S
Sbjct: 157 SLYVAGPDIYKMDVKTGKYTVALPLRNWNR---KGYSAPDVLYFWPHQSP-------RHE 206
Query: 841 NPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNII 900
+ ++ T KT T F +
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ 266
Query: 901 AIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWE 960
+ + Y+++ ++ +AF + L G + L V++ D E
Sbjct: 267 IY-GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324
Query: 961 KQASKFLTIPNGRTASA 977
K + + +P G ++
Sbjct: 325 KVKN--IKLPGGDMSTT 339
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 3e-06
Identities = 26/243 (10%), Positives = 53/243 (21%), Gaps = 10/243 (4%)
Query: 366 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVM 425
P Q++ + ++ M S M
Sbjct: 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168
Query: 426 WSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE 485
G ++ + H S+ + + + T
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 486 DRVIKVWDAVTGTKQYI-FEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR 544
D TG F ++ K+ Q ++ +
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQ-RKL 284
Query: 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTY-HGLGKRSVGV 603
+ H+ +A+ G +L+ GT + L +N + G S
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFND----LAVFNPDTLEKVKNIKLPGGDMSTTT 340
Query: 604 VQF 606
Q
Sbjct: 341 PQV 343
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 34/241 (14%), Positives = 64/241 (26%), Gaps = 7/241 (2%)
Query: 324 NILPVAYTPQSLGQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVML 383
P A SL + T +L TV + S+D L+ G N G V +
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQI 209
Query: 384 WEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVH 443
E+ + + + + + S + + G +
Sbjct: 210 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI 269
Query: 444 LYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIF 503
+ L AH V L+F+ + + + G D ++ WD T +
Sbjct: 270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET--LCSAGWDGKLRFWDVKTKERITTL 327
Query: 504 EGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADG 563
H + + S A G + ++ D
Sbjct: 328 NMHCDDIEIEEDILAVDEHG-DSLAEPGVFDVKFLKKGWRSGMGA--DLNESLCCVCLDR 384
Query: 564 A 564
+
Sbjct: 385 S 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 1e-07
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 460 EAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE-----------GHES 508
+AH + ++ N V+C D +KVWD + + H
Sbjct: 11 KAHDADIFSVSAC--NSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 509 PVYSICPHHKENIQFIFSTATDGKIKAW 536
V + + +T+ G + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFY 94
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 23/214 (10%), Positives = 62/214 (28%), Gaps = 49/214 (22%)
Query: 499 KQYI-----FEGHESPVYSICPHHKENIQFIFSTATDGKIKAW-------------LYDN 540
K +I + H++ ++S+ + F S + DG +K W Y +
Sbjct: 1 KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56
Query: 541 LGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE--------GESYLVEWNESEGAVKRT 592
+ + + + + + + + + E +
Sbjct: 57 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD 116
Query: 593 YHGLGKRSVGVVQFD--TTKNRFLAAGDEFMIKFWDM-----DNVNLLASIDADGGLQAS 645
++ + +R +A + W ++ +L + LQ +
Sbjct: 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 176
Query: 646 P-----------CIRFNKEGILLAVSTNDNGIKI 668
+ ++ G L+A N+ ++I
Sbjct: 177 VESPMTPSQFATSVDISERG-LIATGFNNGTVQI 209
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 6e-05
Identities = 46/392 (11%), Positives = 103/392 (26%), Gaps = 25/392 (6%)
Query: 602 GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST 661
+ + ++ + +K WD ++ D + +L A+
Sbjct: 16 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK-SGLHHVDVLQAIER 74
Query: 662 NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTA 721
+ + ++A L D ++ + + +
Sbjct: 75 DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134
Query: 722 PAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSR 781
+ +V + ADE+ + W T + + + T++ +S
Sbjct: 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 194
Query: 782 --LIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISD 839
LI T + + P S N S I+
Sbjct: 195 RGLIATGFNNGTVQI----SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 840 TNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 899
+ ++ + S S S + ++++ L+F+
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFNDS-GET 303
Query: 900 IAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI----TGLAFSNTLNVLVSSGADSQLCVWS 955
+ D ++ ++V+ E T L H I LA + L G V+
Sbjct: 304 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFD 357
Query: 956 TDGWEK-QASKFLTIPNGRTASALADTRVQFH 986
+K S N D +++
Sbjct: 358 VKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.003
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 923 LKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIP 970
K H I ++ N + VS D L VW + + K +
Sbjct: 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYS 55
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.003
Identities = 15/164 (9%), Positives = 33/164 (20%), Gaps = 30/164 (18%)
Query: 412 SLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAF 471
S + +T S S DG L + + H ++ +
Sbjct: 21 SACNSFTVSC-----SGDGYL-------KVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 472 -----SYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKE------- 519
+ V T + + + + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 520 ------NIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM 557
+ +T G W + + S T+
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 5e-08
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 869 FNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVD-EVKTKLKGHQ 927
+ + PA + +++A G D++I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 928 KRITGLAFSNTLNVLVSSGADSQLCVWS 955
+ L + + LVSSGAD+ + W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHES 508
G DE+ + H + L + +++ D I W + + + H +
Sbjct: 1 GHDEVLKTIS--GHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSN 47
Query: 509 PVYSICPHHKENIQFIFS 526
+ S+ + I
Sbjct: 48 LIVSLDNSKAQEYSSISW 65
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 5e-06
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 481 VTCGEDRVIKVWDAVTGTKQY-IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
T D I ++ K H+ V ++ + S+ D IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 6e-05
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 394 VKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL 453
++S +V + + S A + L + +Y+ ++
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250
Query: 454 RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAV 495
L AH VN+L + P+ +V+ G D IK W+ V
Sbjct: 251 IKALN--AHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 917 DEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT 968
DEV + GH K IT L + L+S D ++ WS+ + S +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIV 50
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.3 bits (118), Expect = 5e-07
Identities = 12/96 (12%), Positives = 23/96 (23%), Gaps = 5/96 (5%)
Query: 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
G+ L + P G + + T I+ H + +
Sbjct: 18 GTAVVLGNT-PAGDKIQYCNGTS--VYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72
Query: 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559
S G ++ W + P S +
Sbjct: 73 CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG 946
A L P + I +S+ V H + T S + S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 947 ADSQLCVWSTDGW 959
+ +W T
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 870 NMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQK- 928
F+ + + F D IA D +I+I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 929 RITGLAFSNTLNVLVSSGADSQLCVWSTD 957
L T LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 31/272 (11%), Positives = 68/272 (25%), Gaps = 19/272 (6%)
Query: 357 SAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSD 416
P G G+V +W+ + L +
Sbjct: 59 HQTTVAKTSP-SGYYCASGDVHGNVRIWD---------TTQTTHILKTTIPVFSGPVKDI 108
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
S ++ + + + + + S S +
Sbjct: 109 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 168
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAW 536
V E K +++ +P S+ + + DG
Sbjct: 169 N--TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 226
Query: 537 LYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596
D+ V + + +S DG ++ S +K + WN + V++T
Sbjct: 227 FEDDSLKNVAHSGSVF---GLTWSPDGTKIASASADK----TIKIWNVATLKVEKTIPVG 279
Query: 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD 628
+ + TK ++ I F + +
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.8 bits (117), Expect = 9e-07
Identities = 35/304 (11%), Positives = 76/304 (25%), Gaps = 48/304 (15%)
Query: 418 TASVNRVMWSPDGTLFGVAYSKH-------------IVHLYTYHGGDELRNHLEIEAHVG 464
+ + + DG+ A + + T ++ VG
Sbjct: 46 GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVG 105
Query: 465 S-VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
+ + + K L + V D + + + +
Sbjct: 106 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT----- 160
Query: 524 IFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMM------AYSADGARLFSCGTNKEGES 577
F DG + + G+ AYS RL +
Sbjct: 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ 220
Query: 578 YLVEWNESEGAVKRTYHGLGKRSVG-----------------VVQFDTTKNRFLAAGDEF 620
+ +++ +R+ G + ++ +
Sbjct: 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR 280
Query: 621 MIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLL 678
+ D LA + + + I +++ +L A+ST D + I G L
Sbjct: 281 FVVVLDAKTGERLAKFEMGHEIDS---INVSQDEKPLLYALSTGDKTLYIHDAESG-EEL 336
Query: 679 RTVE 682
R+V
Sbjct: 337 RSVN 340
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 5e-05
Identities = 14/166 (8%), Positives = 38/166 (22%), Gaps = 11/166 (6%)
Query: 341 STDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVW 400
+ ++ + + + + + GD A ++
Sbjct: 188 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247
Query: 401 ELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE 460
Q + + + + V + G+ L
Sbjct: 248 ----PGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF---- 296
Query: 461 AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506
++ + S K L D+ + + DA +G +
Sbjct: 297 EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 27/293 (9%), Positives = 64/293 (21%), Gaps = 13/293 (4%)
Query: 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSV--- 480
+PD V H + D + G + + + ++
Sbjct: 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAST 66
Query: 481 -----VTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK-----ENIQFIFSTATD 530
++V+D VT E ++P + + + + + +
Sbjct: 67 VFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS 126
Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590
+ D G + +A C + E
Sbjct: 127 PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT 186
Query: 591 RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650
+H + + + R + I D+ + + + +A +
Sbjct: 187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 246
Query: 651 NKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIG 703
G L SR + + +G
Sbjct: 247 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG 299
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 6e-06
Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 17/161 (10%)
Query: 358 AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLS--- 414
V + F V + ++ V + + ++ S P+
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 415 -----SDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDL 469
+ + + A K ++ Y ++ ++ DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 470 AFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPV 510
S K + + +D I + + E + P+
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 24/217 (11%), Positives = 54/217 (24%), Gaps = 13/217 (5%)
Query: 412 SLSSDYTASVNRVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLA 470
S+ S + +SP DG L S+ + G L+ + +
Sbjct: 1 SIPSKFAED-----FSPLDGDLIAFV-SRGQAFIQDVSGTYVLK-----VPEPLRIRYVR 49
Query: 471 FSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATD 530
K + E + ++D TG + E + + +
Sbjct: 50 RGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEI 109
Query: 531 GKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVK 590
+ +A T+ S A F + + + + +
Sbjct: 110 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 169
Query: 591 RTYHGLGKRSVGVVQFDTTKNRFLA-AGDEFMIKFWD 626
+ + + S ++ L + D
Sbjct: 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 10/130 (7%), Positives = 33/130 (25%), Gaps = 13/130 (10%)
Query: 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMT--------FKTMTTFMPPPPAATFLAFHP 894
+ L + ++ + ++ + +
Sbjct: 227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 286
Query: 895 QDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVW 954
E + Y+V+ K+ + +T L S ++ D ++ +
Sbjct: 287 -FAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTF 341
Query: 955 STDGWEKQAS 964
+ E + +
Sbjct: 342 PLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.001
Identities = 24/335 (7%), Positives = 79/335 (23%), Gaps = 48/335 (14%)
Query: 344 DLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGD-VMLWEVGSRERIAVKSFKVWEL 402
D+ T V+ + + ++ + ++ + GT GD + +++ + + +
Sbjct: 30 DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89
Query: 403 GA----------------------CSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440
+ A + S + +
Sbjct: 90 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149
Query: 441 IVHLYTYHGGDELRNHLEIEAHVGS----VNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496
Y +E + +D A ++ ++ + D V
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Query: 497 G-------TKQYIFEGHESPVYSICPHHKEN---IQFIFSTATDGKIKAWLYDNLGSRVD 546
+K ++ + + D R+
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269
Query: 547 YDAPGHSS--TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVV 604
++ + A L++++ V + + +
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGV----LLKYDVKTRKVTEVKNN-----LTDL 320
Query: 605 QFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD 639
+ + + D+ I + ++ +++ D
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.8 bits (91), Expect = 0.001
Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 5/80 (6%)
Query: 885 PAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVS 944
P+ F P D ++IA Q + V RI + V
Sbjct: 3 PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59
Query: 945 SGADS--QLCVWSTDGWEKQ 962
G L ++ + +
Sbjct: 60 HGTREGDFLGIYDYRTGKAE 79
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 23/352 (6%), Positives = 78/352 (22%), Gaps = 46/352 (13%)
Query: 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430
++ +++ + K + + G + M +P G
Sbjct: 3 YILAPARPDKLVVIDTEKMA--VDKVITIADAGP---------------TPMVPMVAPGG 45
Query: 431 TLFGVAYSK-HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVI 489
+ +K + G+ L + + ++ +
Sbjct: 46 RIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRL 105
Query: 490 KVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL------GS 543
++ + E+ I + K+ D G+
Sbjct: 106 ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGT 165
Query: 544 RVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSV-- 601
V+ D +++ + + +
Sbjct: 166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225
Query: 602 ----------------GVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQAS 645
+ A G +++ +D++ + +
Sbjct: 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYY-- 283
Query: 646 PCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIV 697
+ + +G + + + +A+ + V+ + +AS +
Sbjct: 284 -SVNVSTDGSTVWLGGALGDLAAY-DAETLEKKGQVDLPGNASMSLASVRLF 333
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 36/375 (9%), Positives = 95/375 (25%), Gaps = 44/375 (11%)
Query: 610 KNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKIL 669
++ LA + D + + + I G + + N + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 670 ANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGM 729
+ L ++ T + + +P T
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE-------------------- 100
Query: 730 SNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGL 789
+ ++ + + ++ ++ + R L R +Y
Sbjct: 101 -----SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG-- 153
Query: 790 AILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCF 849
P K + + + P + + N +
Sbjct: 154 ---------RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204
Query: 850 ALSKNDSYVMSASGGKISLFNMMTFK-TMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSS 908
A D +A + ++ T + M A +P +
Sbjct: 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNV 261
Query: 909 IQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLT 968
++ +++ + ++ + S + + GA L + + EK+ +
Sbjct: 262 LESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ--VD 318
Query: 969 IPNGRTASALADTRV 983
+P G + +LA R+
Sbjct: 319 LP-GNASMSLASVRL 332
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.6 bits (93), Expect = 8e-04
Identities = 27/270 (10%), Positives = 63/270 (23%), Gaps = 15/270 (5%)
Query: 342 TDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWE 401
DL + A S D + V + + A +
Sbjct: 71 RIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA 130
Query: 402 LGACSMPLQASLSSDYT---ASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458
A + + D + + V + ++
Sbjct: 131 FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN 190
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI-FEGHESPVYSICPHH 517
G + ++ + D TG + +S +
Sbjct: 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP 250
Query: 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGES 577
+ F ++++ + + + HS + S DG+ ++ G +
Sbjct: 251 AKTRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD--- 302
Query: 578 YLVEWNESEGAVKRTY--HGLGKRSVGVVQ 605
L ++ K G S+ V+
Sbjct: 303 -LAAYDAETLEKKGQVDLPGNASMSLASVR 331
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 21/196 (10%), Positives = 48/196 (24%), Gaps = 15/196 (7%)
Query: 451 DELRNHLEIEAHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
E+R ++ + + L VT + I + D T + + + +
Sbjct: 5 KEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64
Query: 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY-----DAPGHSSTMMAYSADGA 564
+ +++F DGK+ T +
Sbjct: 65 -HISRLSASG--RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121
Query: 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAA---GDEFM 621
+ V + K+ G + + A EF+
Sbjct: 122 YAIAGA---YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178
Query: 622 IKFWDMDNVNLLASID 637
+ + + L+ D
Sbjct: 179 VNVKETGKILLVDYTD 194
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (102), Expect = 1e-04
Identities = 41/342 (11%), Positives = 86/342 (25%), Gaps = 37/342 (10%)
Query: 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACS 406
+ L+ G AV + L V+G + G V + ++ +E V K+
Sbjct: 52 YEIKTVLDTGYAVHISRLSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKI------- 103
Query: 407 MPLQASLSSDYTASVNRVMWSPDG-TLFGVAYSKHIVHLYTYHGGDELRNH-------LE 458
S+ + M + AY + + + E
Sbjct: 104 -------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 156
Query: 459 IEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHK 518
E H + + +V E I + D E
Sbjct: 157 QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216
Query: 519 ENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESY 578
+ FI + K+ D G + + +
Sbjct: 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN--------FVHPTFGPV 268
Query: 579 LVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMD-NVNLLASID 637
+ + +V G + + G IK + + A+++
Sbjct: 269 WATSHMGDDSV--ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326
Query: 638 ADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLR 679
+ + S + F+ + + +D K L A+ +
Sbjct: 327 PEAEISGSVAV-FDIK--AMTGDGSDPEFKTLPIAEWAGITE 365
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 43.2 bits (101), Expect = 1e-04
Identities = 19/164 (11%), Positives = 45/164 (27%), Gaps = 15/164 (9%)
Query: 847 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGME 905
+ + ++ G+I+L + T++ T A + +
Sbjct: 24 QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVL-DTGYAVHISRLSA-SGRYLFVIGR 81
Query: 906 DSSIQIYNV------RVDEVKTKLKGHQKRITGLAFSNTLN-VLVSSGADSQLCVWSTDG 958
D + + ++ V E+K + T + + Q + +
Sbjct: 82 DGKVNMIDLWMKEPTTVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 140
Query: 959 WEKQASKFLTIPNGRTASALADTRVQF----HLDQTHLLAVHET 998
E + + + RV H ++ V ET
Sbjct: 141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 12/181 (6%), Positives = 35/181 (19%), Gaps = 13/181 (7%)
Query: 451 DELRNHLEIEAHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
E+R ++ L VT + I + D + + + +
Sbjct: 5 PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV 64
Query: 510 VYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYD-----APGHSSTMMAYSADGA 564
+ +++ D +I + + +
Sbjct: 65 -HISRMSASG--RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121
Query: 565 RLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKF 624
+ + E + +V + +F
Sbjct: 122 YTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177
Query: 625 W 625
Sbjct: 178 I 178
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.9 bits (97), Expect = 4e-04
Identities = 32/284 (11%), Positives = 63/284 (22%), Gaps = 27/284 (9%)
Query: 336 GQSSYSTDDLPKTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVK 395
+ + + P + + K + + V +
Sbjct: 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179
Query: 396 SFK----VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGD 451
+ K V + + S + W F A +
Sbjct: 180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239
Query: 452 ELRNHLEIEAHVGSVNDLAFSYPN-KQLSVVTCGEDRVI-------KVWDAVTGTKQYIF 503
L +++ F +P + + D I K K
Sbjct: 240 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 299
Query: 504 EGHESPVYSICPHHKE-NIQFIFSTATDGKIKAWLY-------------DNLGSRVDYDA 549
+G I H K ++ + D +I + + D
Sbjct: 300 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 359
Query: 550 PGHSSTMMAYSADGARL-FSCGTNKEGESYLVEWNESEGAVKRT 592
Y+ G + FS K S LV ++ +K
Sbjct: 360 GAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 403
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 5e-04
Identities = 25/248 (10%), Positives = 69/248 (27%), Gaps = 27/248 (10%)
Query: 340 YSTDDLPKTVVMTLNQGS-AVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFK 398
+ ++ ++ + + K ++ + + V + G + L + S++ + V
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV---- 57
Query: 399 VWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLE 458
+ G +V+ S G V + + E E
Sbjct: 58 -IDTGY---------------AVHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAE 100
Query: 459 IEA---HVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICP 515
I+ + Y ++ + + D T + I V +
Sbjct: 101 IKIGIEARSVESSKFKGYEDRYT-IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY 159
Query: 516 HHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEG 575
H + + I ++ + + + G + + + + L G +
Sbjct: 160 HPEPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSH 218
Query: 576 ESYLVEWN 583
++ N
Sbjct: 219 RYFMTAAN 226
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.7 bits (99), Expect = 2e-04
Identities = 27/301 (8%), Positives = 66/301 (21%), Gaps = 46/301 (15%)
Query: 418 TASVNRVMWSPDGTLFGVA---YSK----------HIVHLYTYHGGDELRNHLEIE-AHV 463
A ++ + G+ F +A +++ + T+ ++ +
Sbjct: 64 GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123
Query: 464 GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQF 523
V+ + + L + + + +
Sbjct: 124 PRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA-----T 177
Query: 524 IFSTATDGKIKAWLYDNLGSRVDYD------APGHSSTMMAYSADGARLFSCGT------ 571
+ + + A + A SS + G +++ +
Sbjct: 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD 237
Query: 572 -NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFM-------IK 623
G + + +E K + +T L
Sbjct: 238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297
Query: 624 FWDMDNVNLLASIDADGGLQASPCIRFNKEG--ILLAVSTNDNGIKILANADGIRLLRTV 681
I A I ++G A S + I A + +V
Sbjct: 298 SVTASVGQTSGPISNGHDSDA---IIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353
Query: 682 E 682
E
Sbjct: 354 E 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.0 bits (92), Expect = 0.001
Identities = 14/173 (8%), Positives = 37/173 (21%), Gaps = 8/173 (4%)
Query: 341 STDDLPKTVVMTLNQGSAVKSMDFHPV----QQILLVVGTNMGDVMLWEVGSRERIAVKS 396
P + Q + ++ +L+ + A
Sbjct: 191 DLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAID 250
Query: 397 FKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH 456
A + + + +M + T G
Sbjct: 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-- 308
Query: 457 LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
++ + + + + V+ ++DA + Q E + P
Sbjct: 309 --PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 5e-04
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 2/93 (2%)
Query: 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNK 476
A+ + + +P+GT V + + + I +A + P+
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVT-PDG 255
Query: 477 QLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESP 509
+ V + V D T T ++P
Sbjct: 256 KKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.002
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 13/142 (9%)
Query: 833 MTNDISDTNPEDAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLA 891
+ D V A K ++ + + T ++P P L
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE-FTRYIPVPKNPHGLN 264
Query: 892 FHPQDNNIIAIGMEDSSIQIYNV-RVDEVKTKLKGHQKRITG----------LAFSNTLN 940
P IA G ++ + + ++D++ + I F N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324
Query: 941 VLVSSGADSQLCVWSTDGWEKQ 962
+ DSQ+C W+ K
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1015 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.98 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.81 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.74 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.59 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.57 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.49 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.38 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.37 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.28 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.09 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.98 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.92 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.86 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.73 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.6 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.39 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.95 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.87 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.83 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.71 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.65 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.61 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.41 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.84 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.8 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.67 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.67 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.66 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.53 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.33 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.26 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.06 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.91 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.48 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 95.2 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.51 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 93.09 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.84 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.31 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 81.46 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-39 Score=282.95 Aligned_cols=294 Identities=14% Similarity=0.186 Sum_probs=248.8
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 41679840699743788636898199999458719999759962376753378751678855422235668888799998
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 347 ~~~~~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 426 (1015)
.+.++++.|...|+|++|+|+|+ ++++|+ ||.|+|||+.++..... .......+|.+.|++++|
T Consensus 42 ~~~~~~~~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~ 105 (337)
T d1gxra_ 42 ARQINTLNHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL 105 (337)
T ss_dssp EEEEEEECCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred CEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEECCCCCCCCE--------------EEEEEECCCCCCEEEEEE
T ss_conf 54999879999289999989999-999997-99889977367763311--------------687640488996899998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 23999899998798699998118930112358822347654999944999359999938991999986899467995078
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 427 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 506 (1015)
+||+++|++|+.|+.|++|++...... ....+..|...+.+++|+|++. ++++++.|+.+++|++.+++......+|
T Consensus 106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~ 182 (337)
T d1gxra_ 106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH 182 (337)
T ss_dssp CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 679988988612332111111111111-1111111111111111111111--1111111111111111111111111111
Q ss_pred CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCC
Q ss_conf 89979983013699649999827992999967899831331499996389999789999999851789983699996898
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
...+.+++|++.+ ..+++++.|+.+++||+++......+. +...+.+++|+|+++.+++++.++ .+++||...
T Consensus 183 ~~~v~~l~~s~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~----~i~i~d~~~ 255 (337)
T d1gxra_ 183 TDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS----NVEVLHVNK 255 (337)
T ss_dssp SSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS----CEEEEETTS
T ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCC----CCCCCCCCC
T ss_conf 1111101234443--211223566553211111100000246-666157999715303000000256----421111111
Q ss_pred CEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCE
Q ss_conf 70347850789878489999279999999958982999968998236998258999985438972899999999679959
Q 001776 587 GAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGI 666 (1015)
Q Consensus 587 ~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i 666 (1015)
+.... ...|.. .+.+++|+|+++++++++.|+.|++||..+++.+..+.. ...|.+++|+|++++|++++.|+.|
T Consensus 256 ~~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I 330 (337)
T d1gxra_ 256 PDKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp SCEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCE
T ss_pred CCCCC-CCCCCC-CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCC---CCCEEEEEEECCCCEEEEEECCCEE
T ss_conf 11000-012456-541699989999999994899699998999979999269---9987999992799999999089969
Q ss_pred EEEEC
Q ss_conf 99983
Q 001776 667 KILAN 671 (1015)
Q Consensus 667 ~iw~~ 671 (1015)
++|++
T Consensus 331 ~vWdl 335 (337)
T d1gxra_ 331 TVYEV 335 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99977
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-37 Score=270.49 Aligned_cols=75 Identities=16% Similarity=0.309 Sum_probs=38.5
Q ss_pred CCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEE------ECCCCEEEEEECCCCEEEEE
Q ss_conf 999991699973899958999974981999982136289997175577679999------27999999981898299998
Q 001776 882 PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAF------SNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 882 ~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~------spdg~~l~s~s~dg~i~iWd 955 (1015)
.|...|.+++|+| ++++|++|+.||.|++||+.+++++.++.+|.+.|+++++ +|++.+|++|+.||+|++|+
T Consensus 306 ~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~ 384 (388)
T d1erja_ 306 GHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384 (388)
T ss_dssp CCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEEEEE
T ss_conf 4553278999889-999999996989799999999969999968899789999846742589999999991899799976
Q ss_pred CC
Q ss_conf 56
Q 001776 956 TD 957 (1015)
Q Consensus 956 ~~ 957 (1015)
++
T Consensus 385 ~~ 386 (388)
T d1erja_ 385 YK 386 (388)
T ss_dssp EE
T ss_pred EE
T ss_conf 21
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-37 Score=271.36 Aligned_cols=185 Identities=16% Similarity=0.261 Sum_probs=91.1
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 41679840699743788636898199999458719999759962376753378751678855422235668888799998
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 347 ~~~~~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 426 (1015)
..+..+++|.+.|+|++|||+|+ ++|+|+ |+.|+|||+.+++.+.......... .............|...|++++|
T Consensus 53 ~~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~l~~ 129 (388)
T d1erja_ 53 VELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCF 129 (388)
T ss_dssp EEEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEEE-CCEEEEEEECCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 41076079999689999999999-999994-9948999813640576631665443-24432111014677898899998
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 23999899998798699998118930112358822347654999944999359999938991999986899467995078
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 427 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 506 (1015)
+|++++|++|+.||.|++|+...++... .+.+|...|.++.|++++. .+++++.++.+++||..+.........+
T Consensus 130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 204 (388)
T d1erja_ 130 SPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIE 204 (388)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC--CCCCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf 8999801213444111121111111111---1111111111101111111--1112221015654101111110000124
Q ss_pred CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 89979983013699649999827992999967899
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNL 541 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 541 (1015)
.. ...+.+.+ .++.++++++.|+.|++|+..+.
T Consensus 205 ~~-~~~~~~~~-~~~~~l~~~~~d~~i~i~~~~~~ 237 (388)
T d1erja_ 205 DG-VTTVAVSP-GDGKYIAAGSLDRAVRVWDSETG 237 (388)
T ss_dssp SC-EEEEEECS-TTCCEEEEEETTSCEEEEETTTC
T ss_pred CC-CCCCCCCC-CCCCEEEEECCCCEEEEEECCCC
T ss_conf 54-42112368-87875899738981999634557
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.3e-37 Score=270.25 Aligned_cols=103 Identities=19% Similarity=0.367 Sum_probs=79.4
Q ss_pred CCCCCEEEEEC-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE
Q ss_conf 35997999971-99199996778714689379999916999738999589999749819999821362899971755776
Q 001776 852 SKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI 930 (1015)
Q Consensus 852 s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v 930 (1015)
..++.++++++ |+.|++|++.+++++.++.+|...|.+++|+| ++++|++++.||.|++||+.+++++.++.+|.++|
T Consensus 214 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V 292 (317)
T d1vyhc1 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 292 (317)
T ss_dssp ---CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCE
T ss_pred CCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCE
T ss_conf 25886147516997899988899968899968899879999879-99999999798949999999991999992899988
Q ss_pred EEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 7999927999999981898299998
Q 001776 931 TGLAFSNTLNVLVSSGADSQLCVWS 955 (1015)
Q Consensus 931 ~~l~~spdg~~l~s~s~dg~i~iWd 955 (1015)
++++|+|++++|++++.||+|++||
T Consensus 293 ~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 293 TSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999949999999992899499829
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.5e-38 Score=274.73 Aligned_cols=266 Identities=17% Similarity=0.321 Sum_probs=209.6
Q ss_pred ECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 40699743788636898199999458719999759962376753378751678855422235668888799998239998
Q 001776 353 LNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 353 l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~ 432 (1015)
-+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+|++.+
T Consensus 14 ~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~~~~~ 73 (317)
T d1vyhc1 14 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHSGKL 73 (317)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTTSSE
T ss_pred CCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEEECCCCC
T ss_conf 58888768999938989-999993899299998999979999-------------------9578886777763011110
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 99998798699998118930112358822347654999944999359999938991999986899467995078899799
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 433 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
++++..++.+.+|+........ .+.+|...+.++.|++++. .+++++.|+.+++||+.+++....+.+|...+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (317)
T d1vyhc1 74 LASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148 (317)
T ss_dssp EEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEECCCCCC--EEEEECCCCCEEEEECCCCEEEEEECCCCCCCEE
T ss_conf 1111111110111001111111---1000000000000169985--5776526752357511443034687167776300
Q ss_pred EEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 83013699649999827992999967899831331499996389999789999999851789983699996898703478
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~ 592 (1015)
++|++++ .++++++.|+.+++|+.........+..+...+.++.++|++.........
T Consensus 149 ~~~~~~~--~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------------- 206 (317)
T d1vyhc1 149 VRPNQDG--TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-------------------- 206 (317)
T ss_dssp EEECTTS--SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC--------------------
T ss_pred EECCCCC--CEEEEEECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCC--------------------
T ss_conf 0016679--999999279829997512540347882477873379986325641110345--------------------
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 50789878489999279999999958982999968998236998258999985438972899999999679959999836
Q 001776 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 593 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~ 672 (1015)
..........+..+++++.|+.|++|+..+++++..+..| ...|.+++|+|++.+|++++.||.|++||+.
T Consensus 207 -------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 277 (317)
T d1vyhc1 207 -------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277 (317)
T ss_dssp -------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred -------CCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECC--CCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf -------6303430258861475169978999888999688999688--9987999987999999999798949999999
Q ss_pred CC
Q ss_conf 87
Q 001776 673 DG 674 (1015)
Q Consensus 673 ~~ 674 (1015)
++
T Consensus 278 ~~ 279 (317)
T d1vyhc1 278 NK 279 (317)
T ss_dssp TS
T ss_pred CC
T ss_conf 99
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-37 Score=267.55 Aligned_cols=245 Identities=13% Similarity=0.177 Sum_probs=134.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--EEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 68888799998239998999987986999981189301123--5882234765499994499935999993899199998
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--LEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 416 ~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd 493 (1015)
+|...|++++|+|+|++|++|+ ||.|+|||+.++...... ....+|.+.|.+++|+|+++ +|++++.|+.|++||
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD 125 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCC--EEEEEECCCCCCCCC
T ss_conf 9999289999989999999997-9988997736776331168764048899689999867998--898861233211111
Q ss_pred CCCC--CEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 6899--46799507889979983013699649999827992999967899831331499996389999789999999851
Q 001776 494 AVTG--TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 494 ~~~~--~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
+... +....+..|...+..++|+++. .++++++.|+.+++|++.+.........+...+.+++|++++..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~ 203 (337)
T d1gxra_ 126 LAAPTPRIKAELTSSAPACYALAISPDS--KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111--11111111111111111111111111111111110123444321122356
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 78998369999689870347850789878489999279999999958982999968998236998258999985438972
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 651 (1015)
++ .+++||+++++.+..+.. .. .+.+++|+|++..+++++.|+.+++|++..++.... . .+...|++++|+
T Consensus 204 d~----~v~i~d~~~~~~~~~~~~-~~-~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~--~~~~~i~~v~~s 274 (337)
T d1gxra_ 204 DN----TVRSWDLREGRQLQQHDF-TS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-H--LHESCVLSLKFA 274 (337)
T ss_dssp TS----EEEEEETTTTEEEEEEEC-SS-CEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-C--CCSSCEEEEEEC
T ss_pred CC----CCCCCCCCCCEEECCCCC-CC-CEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCC-C--CCCCCCCEEEEC
T ss_conf 65----532111111000002466-66-157999715303000000256421111111110000-1--245654169998
Q ss_pred CCCCEEEEEECCCCEEEEECCCC
Q ss_conf 89999999967995999983687
Q 001776 652 KEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 652 ~~~~~l~s~~~dg~i~iw~~~~~ 674 (1015)
|++++|++++.|+.|++|+..++
T Consensus 275 ~~g~~l~s~s~Dg~i~iwd~~~~ 297 (337)
T d1gxra_ 275 YCGKWFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC
T ss_pred CCCCEEEEEECCCEEEEEECCCC
T ss_conf 99999999948996999989999
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.8e-37 Score=267.67 Aligned_cols=287 Identities=15% Similarity=0.185 Sum_probs=236.3
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 69974378863689819999945871999975996237675337875167885542223566888879999823999899
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 434 (1015)
+.+.+.+++++|+|+. ++.++ ++.|.+|++.+...... +.+|...|++++|+|+|++||
T Consensus 16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCEEEEEECCCCCE-EEEEE-CCEEEEEECCCCCEEEE-------------------ECCCCCCEEEEEEECCCCEEE
T ss_conf 7887599999699899-99996-99999999999966179-------------------747888889999948999672
Q ss_pred EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEEC--CCEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 998798699998118930112358822347654999944999359999938--991999986899467995078899799
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGE--DRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
+|+.||.|++|++.++..... ..+.+|..+|.+++|+|+++ ++++++. +..+++|++++++...++.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred CCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 255673674663101111000-01343357543323331110--001111221111111111111111111111111111
Q ss_pred EEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 83013699649999827992999967899831331499996389999789999999851789983699996898703478
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~ 592 (1015)
++|+++.+ ..+++++.|+.|++||+++.........+...+.++.|+|+++++++++.|+ .+.+||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~----~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG----TIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETTTCCEEEE
T ss_pred CCCCCCCE-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCC
T ss_conf 11121110-1200011221111111111111111111111111123476422121111111----110001244641122
Q ss_pred EEC-------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCC
Q ss_conf 507-------8987848999927999999995898299996899823699825899998543897289999999967995
Q 001776 593 YHG-------LGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG 665 (1015)
Q Consensus 593 ~~~-------~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~ 665 (1015)
+.. |.. .|.+++|+|+++++++++.||.|++||+.+++++..+..+... ....+.+.+++..+++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCC-CCEEEEEEECCCEEEEEECCCE
T ss_conf 2111111100246-5321024788999999937996999999999699999799986-3329999951999999989997
Q ss_pred EEEEECC
Q ss_conf 9999836
Q 001776 666 IKILANA 672 (1015)
Q Consensus 666 i~iw~~~ 672 (1015)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEECC
T ss_conf 9999588
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.3e-36 Score=264.41 Aligned_cols=226 Identities=18% Similarity=0.251 Sum_probs=149.3
Q ss_pred CCCCCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEE
Q ss_conf 356688887-9999823999899998798699998118930112358822347654999944999359999938991999
Q 001776 413 LSSDYTASV-NRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKV 491 (1015)
Q Consensus 413 ~~~~h~~~V-~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~i 491 (1015)
++.||...| +|++ +++++|++|+.||.|++||+.+++.+. ++.+|.++|++++|++++ ++++++.|+.|++
T Consensus 7 tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i 78 (355)
T d1nexb2 7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 78 (355)
T ss_dssp EEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred EECCCCCCCEEEEE--ECCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEECCCC---EEEEEECCCCCCC
T ss_conf 88983788699999--889999999189909999899993999---997899988999986999---9999964524432
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 98689946799507889979983013699649999827992999967899831331499996389999789999999851
Q 001776 492 WDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGT 571 (1015)
Q Consensus 492 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 571 (1015)
|+.........................+++..+++++.|+.|++|++............... ......+..
T Consensus 79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~-------- 149 (355)
T d1nexb2 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEE-------- 149 (355)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC-CEEESCTTT--------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEE-CCCEECCCC--------
T ss_conf 11111111111100111111111111123220455438886899985677300124652000-100000112--------
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEC
Q ss_conf 78998369999689870347850789878489999279999999958982999968998236998258999985438972
Q 001776 572 NKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN 651 (1015)
Q Consensus 572 d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s 651 (1015)
..........+.. .+ ..+.++++.++++..|+.+++||..+++.+.....+ ...+.++.++
T Consensus 150 --------------~~~~~~~~~~~~~-~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~ 210 (355)
T d1nexb2 150 --------------NPYFVGVLRGHMA-SV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYD 210 (355)
T ss_dssp --------------CTTEEEEEECCSS-CE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEE
T ss_pred --------------CCCEEEEEEECCC-CC--CCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECC--CCCCCCCCCC
T ss_conf --------------3401210110022-21--000025633442114420444301311000110001--2332111111
Q ss_pred CCCCEEEEEECCCCEEEEECCCC
Q ss_conf 89999999967995999983687
Q 001776 652 KEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 652 ~~~~~l~s~~~dg~i~iw~~~~~ 674 (1015)
+++..+++++.|+.|++|+..++
T Consensus 211 ~~~~~~~~~~~d~~i~i~d~~~~ 233 (355)
T d1nexb2 211 HERKRCISASMDTTIRIWDLENG 233 (355)
T ss_dssp TTTTEEEEEETTSCEEEEETTTC
T ss_pred CCCEEEECCCCCCEEEEEECCCC
T ss_conf 21002101245636876301221
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.5e-35 Score=253.84 Aligned_cols=292 Identities=18% Similarity=0.291 Sum_probs=244.9
Q ss_pred EEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 1679840-699743788636898199999458719999759962376753378751678855422235668888799998
Q 001776 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 348 ~~~~~l~-h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 426 (1015)
...++|. |.+.|++++|+|+++ ++++|+.||.|+|||+.+++.+.. +..|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCC-EEEEEECCCCEEEEECCCCEEEEE-------------------EECCCCCEEEEEE
T ss_conf 65279888789888999989999-999997899555631021025799-------------------7246533775676
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEE-EEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEC
Q ss_conf 239998999987986999981189301-1235882234765499994499935999993899199998689946799507
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDEL-RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 427 spdg~~las~~~dg~i~iwd~~~~~~~-~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 505 (1015)
+|++.++++|+.|+.+.+|+....... .....+.+|...........+. .+.....|.....|.............
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCEEEEEECCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01211443101332010133222212221110013542110111111111---111112445432001232211111233
Q ss_pred CCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 88997998301369964999982799299996789983133149999638999978999999985178998369999689
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
+...+....+.+.. .++++++.|+.+++||+++......+..|...|.+++|+|++.++++++.|+ .+++|+..
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~----~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAPDT--RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA----TCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred CCEEEEEECCCCCC--CEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC----EEEEEEEC
T ss_conf 10157630012442--1268760573699999999948899957889858999979989999996999----69997521
Q ss_pred CCEEEEEEECC-CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCC
Q ss_conf 87034785078-98784899992799999999589829999689982369982589999854389728999999996799
Q 001776 586 EGAVKRTYHGL-GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDN 664 (1015)
Q Consensus 586 ~~~~~~~~~~~-~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg 664 (1015)
.......+... ....+..++|+|++.++++++.||.|++||+.+++.+..+.+| ...|++++|+|++.+|++++.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H--~~~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH--DNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCC--CCCEEEEEEECCCCEEEEECCCC
T ss_conf 2211111112244574589999899999999979798999999999398998489--99789999908999999990699
Q ss_pred CEEEEE
Q ss_conf 599998
Q 001776 665 GIKILA 670 (1015)
Q Consensus 665 ~i~iw~ 670 (1015)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEEC
T ss_conf 799859
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.7e-35 Score=253.06 Aligned_cols=203 Identities=13% Similarity=0.175 Sum_probs=126.6
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 56688887999982399989999879869999811893011235882234765499994499935999993899199998
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd 493 (1015)
+.||.+.|++++|+|++++||+|+.||.|++||+.+++.+. .+..|...|.+++|+|++. ++++++.|+.+.+|+
T Consensus 51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN 125 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE---EEECCCCCEEEEEEECCCE--EEEEECCCCEEECCC
T ss_conf 88878988899998999999999789955563102102579---9724653377567601211--443101332010133
Q ss_pred CCCC----CEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 6899----467995078899799830136996499998279929999678998313314999963899997899999998
Q 001776 494 AVTG----TKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSC 569 (1015)
Q Consensus 494 ~~~~----~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 569 (1015)
.... .....+.+|............ ..+.....+.....+................
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 185 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTG----------------- 185 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSS-----------------
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE-----------------
T ss_conf 22221222111001354211011111111---1111112445432001232211111233101-----------------
Q ss_pred EECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEE
Q ss_conf 51789983699996898703478507898784899992799999999589829999689982369982589999854389
Q 001776 570 GTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIR 649 (1015)
Q Consensus 570 ~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~ 649 (1015)
.+....+.+....+++++.|+.|++||+.+++.+..+..| ...|++++
T Consensus 186 ------------------------------~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h--~~~i~~v~ 233 (340)
T d1tbga_ 186 ------------------------------DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAIC 233 (340)
T ss_dssp ------------------------------CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC--SSCEEEEE
T ss_pred ------------------------------EEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECC--CCCEEEEE
T ss_conf ------------------------------5763001244212687605736999999999488999578--89858999
Q ss_pred ECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 728999999996799599998368
Q 001776 650 FNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 650 ~s~~~~~l~s~~~dg~i~iw~~~~ 673 (1015)
|+|++.++++++.|+.+++|+...
T Consensus 234 ~~p~~~~l~s~s~d~~i~~~~~~~ 257 (340)
T d1tbga_ 234 FFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT
T ss_pred ECCCCCEEEEEECCCEEEEEEECC
T ss_conf 979989999996999699975212
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=9.3e-36 Score=260.16 Aligned_cols=264 Identities=14% Similarity=0.094 Sum_probs=206.3
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99743788636898199999458719999759962376753378751678855422235668888799998239998999
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 356 ~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las 435 (1015)
.++|+|++|+|+|+ ++|+|+.||.|+||+..+++..... .+.+|.++|++++|+|++++|++
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEE-----------------EECCCCCCEEEEEECCCCCEEEE
T ss_conf 98838999989999-9999948898999988899789999-----------------95588998889999799999999
Q ss_pred EECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCE----EEEEECCCCCEE
Q ss_conf 9879869999811893011235882234765499994499935999993899199998689946----799507889979
Q 001776 436 AYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK----QYIFEGHESPVY 511 (1015)
Q Consensus 436 ~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~v~ 511 (1015)
|+.|+.|++|++.++... ....+.+|...|++++|+|+++ .+++++.|+.+++|++..... ......|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCEEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCC--CCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 979993999862033211-0012232211000111111121--1000002576302544203343311100101112221
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 98301369964999982799299996789983133149999638999978999999985178998369999689870347
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~ 591 (1015)
+++|+|+ +.++++++.|+.+++|+.............. .+ .....+....
T Consensus 146 ~v~~~p~--~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~ 195 (371)
T d1k8kc_ 146 SLDWHPN--SVLLAAGSCDFKCRIFSAYIKEVEERPAPTP----------WG------------------SKMPFGELMF 195 (371)
T ss_dssp EEEECTT--SSEEEEEETTSCEEEEECCCTTTSCCCCCBT----------TB------------------SCCCTTCEEE
T ss_pred CCCCCCC--CCCEECCCCCCEEEEEEECCCCCCCCCCCCC----------CC------------------CCCCCEEEEE
T ss_conf 1111111--1110001347679998401576431001221----------11------------------1111101124
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 85078987848999927999999995898299996899823699825899998543897289999999967995999983
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILAN 671 (1015)
Q Consensus 592 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~ 671 (1015)
....|.. .+.+++|+|+++.+++++.|+.|++||+..+..+..+..+ ..+|.+++|++++.++++| .|+.+++|..
T Consensus 196 ~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~s~~fs~d~~~la~g-~d~~~~~~~~ 271 (371)
T d1k8kc_ 196 ESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTY 271 (371)
T ss_dssp ECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEE
T ss_pred ECCCCCC-CEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECC--CCCCEEEEECCCCCEEEEE-CCCCEEEEEE
T ss_conf 4047667-4789875123321000014786058864101210000014--6652036546999799998-1992678776
Q ss_pred CCC
Q ss_conf 687
Q 001776 672 ADG 674 (1015)
Q Consensus 672 ~~~ 674 (1015)
...
T Consensus 272 ~~~ 274 (371)
T d1k8kc_ 272 DSA 274 (371)
T ss_dssp ETT
T ss_pred ECC
T ss_conf 089
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.8e-34 Score=248.23 Aligned_cols=263 Identities=14% Similarity=0.188 Sum_probs=156.2
Q ss_pred CCCCCE-EEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
Q ss_conf 069974-3788636898199999458719999759962376753378751678855422235668888799998239998
Q 001776 354 NQGSAV-KSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTL 432 (1015)
Q Consensus 354 ~h~~~V-~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~ 432 (1015)
+|.+.| +|++| +++ ++++|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|+ .+
T Consensus 10 GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~s~~-~~ 66 (355)
T d1nexb2 10 GHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAHG-GI 66 (355)
T ss_dssp CCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEETT-TE
T ss_pred CCCCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEECCC-CE
T ss_conf 837886999998--899-999991899099998999939999-------------------9789998899998699-99
Q ss_pred EEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 99998798699998118930112358822347654999944999359999938991999986899467995078899799
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYS 512 (1015)
Q Consensus 433 las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 512 (1015)
|++|+.|+.|++|+.......... ....+........+.+++. ++++++.|+.|++|++.++...............
T Consensus 67 l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 143 (355)
T d1nexb2 67 LVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143 (355)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC-----------CCCEE
T ss_pred EEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC--EEEEECCCCCEEEEECCCCCEECCCCCCCEECCC
T ss_conf 999964524432111111111111-0011111111111112322--0455438886899985677300124652000100
Q ss_pred EEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE
Q ss_conf 83013699649999827992999967899831331499996389999789999999851789983699996898703478
Q 001776 513 ICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT 592 (1015)
Q Consensus 513 i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~ 592 (1015)
. ..+......+.. ...+...+ ..+.+++..++.+..++ .+++||..+++....
T Consensus 144 ~-~~~~~~~~~~~~--------------------~~~~~~~v--~~~~~~~~~~~~~~~d~----~i~~~d~~~~~~~~~ 196 (355)
T d1nexb2 144 F-HTPEENPYFVGV--------------------LRGHMASV--RTVSGHGNIVVSGSYDN----TLIVWDVAQMKCLYI 196 (355)
T ss_dssp E-SCTTTCTTEEEE--------------------EECCSSCE--EEEEEETTEEEEEETTS----CEEEEETTTTEEEEE
T ss_pred E-ECCCCCCCEEEE--------------------EEECCCCC--CCCCCCCCEEEEECCCC----EEEEEECCCCCCEEE
T ss_conf 0-001123401210--------------------11002221--00002563344211442----044430131100011
Q ss_pred EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 50789878489999279999999958982999968998236998258999985438972899999999679959999836
Q 001776 593 YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANA 672 (1015)
Q Consensus 593 ~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~ 672 (1015)
..++.. .+.++.+++++..+++++.|+.|++|+..++..+..+..| ...|.+++++ ++++++++.||.|++||+.
T Consensus 197 ~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~ 271 (355)
T d1nexb2 197 LSGHTD-RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDAN 271 (355)
T ss_dssp ECCCSS-CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred EECCCC-CCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCC--CCCCCCCCCC--CCEEEEEECCCCCCCCCCC
T ss_conf 000123-3211111121002101245636876301221111111111--1111111232--1003332011111111111
Q ss_pred CC
Q ss_conf 87
Q 001776 673 DG 674 (1015)
Q Consensus 673 ~~ 674 (1015)
++
T Consensus 272 ~~ 273 (355)
T d1nexb2 272 DY 273 (355)
T ss_dssp TC
T ss_pred CC
T ss_conf 11
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-35 Score=257.00 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=90.3
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 88887999982399989999879869999811893011235882234765499994499935999993899199998689
Q 001776 417 YTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 417 h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~ 496 (1015)
..++|+|++|+||+++||+|+.|+.|++|+..+++. .....+.+|.++|.+++|+|+++ +|++++.|++|++||+.+
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~ 82 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKG 82 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-EEEEEECCCCCCEEEEEECCCCC--EEEEEECCCEEEEEEECC
T ss_conf 998838999989999999994889899998889978-99999558899888999979999--999997999399986203
Q ss_pred CCEE--EEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 9467--9950788997998301369964999982799299996789
Q 001776 497 GTKQ--YIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDN 540 (1015)
Q Consensus 497 ~~~~--~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~ 540 (1015)
+... ..+.+|...|.+++|+|++ +.+++++.|+.+++|+++.
T Consensus 83 ~~~~~~~~~~~~~~~v~~i~~~p~~--~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 83 RTWKPTLVILRINRAARCVRWAPNE--KKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTS--SEEEEEETTSSEEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEECCCCCCEEEEEEC
T ss_conf 3211001223221100011111112--1100000257630254420
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.3e-34 Score=252.21 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=36.6
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCE
Q ss_conf 87999982399989999879869999811893011235882234765499994499935999993899199998689946
Q 001776 420 SVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK 499 (1015)
Q Consensus 420 ~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~ 499 (1015)
.+.+++++|+|+.|+.+. ++.|.+|++.++.... .+.+|...|++++|+|+++ +|++|+.|+.|++||+..+..
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~---~~~~H~~~v~~~~~sp~g~--~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSSTTC
T ss_pred CEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEE---EECCCCCCEEEEEEECCCC--EEECCCCCCEEEEEEEECCCC
T ss_conf 759999969989999996-9999999999996617---9747888889999948999--672255673674663101111
Q ss_pred E--EEEECCCCCEEEEEE
Q ss_conf 7--995078899799830
Q 001776 500 Q--YIFEGHESPVYSICP 515 (1015)
Q Consensus 500 ~--~~~~~h~~~v~~i~~ 515 (1015)
. ..+..|..+|.+++|
T Consensus 93 ~~~~~~~~~~~~v~~v~~ 110 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISW 110 (311)
T ss_dssp CEEEEEECSSSCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCC
T ss_conf 000013433575433233
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-33 Score=243.82 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=46.4
Q ss_pred CEEEEEC-CCEEEEEECCCCCEEEEECCC---CCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEC-----CC
Q ss_conf 7999971-991999967787146893799---99916999738999589999749819999821362899971-----75
Q 001776 856 SYVMSAS-GGKISLFNMMTFKTMTTFMPP---PPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLK-----GH 926 (1015)
Q Consensus 856 ~~la~~s-dg~i~iwd~~~~~~~~~l~~~---~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~-----~h 926 (1015)
+++++++ |+.|++|+....+....+..+ ...+.++.++ +.++++|+.||.|++||++++++++.+. +|
T Consensus 228 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~ 304 (342)
T d2ovrb2 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304 (342)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 999997489889998655442211122100011010000137---98449990899899999999979899862347898
Q ss_pred CCCEEEEEEECCCCEEEEEECCCC----EEEEECC
Q ss_conf 577679999279999999818982----9999856
Q 001776 927 QKRITGLAFSNTLNVLVSSGADSQ----LCVWSTD 957 (1015)
Q Consensus 927 ~~~v~~l~~spdg~~l~s~s~dg~----i~iWd~~ 957 (1015)
.+.|++++|+|++.++++|+.||+ |++||++
T Consensus 305 ~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECC
T ss_conf 89789999879998999996899970489999389
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.3e-32 Score=234.00 Aligned_cols=275 Identities=16% Similarity=0.280 Sum_probs=121.8
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 69974378863689819999945871999975996237675337875167885542223566888879999823999899
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 434 (1015)
|.+.|.+ +++++|+ ++++|+.||+|+|||+.+++.+.. +.+|...|.+++|+++ +|+
T Consensus 15 H~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~~~~~--~l~ 71 (342)
T d2ovrb2 15 HDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMRDN--III 71 (342)
T ss_dssp STTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEETT--EEE
T ss_pred CCCCEEE-EEEECCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEECCC--CCC
T ss_conf 6875099-9997899-999991899099998999979999-------------------9488999899994798--632
Q ss_pred EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 99879869999811893011235882234765499994499935999993899199998689946799507889979983
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+++.|+.+++|+........ ....+...+...... .. .+..+..|+.+.+|+..+++....+...........
T Consensus 72 s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (342)
T d2ovrb2 72 SGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 144 (342)
T ss_dssp EEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEE
T ss_pred CCEECCCCCCCCCCCCCCEE---CCCCCCEEEEEEECC--CC--CCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEEC
T ss_conf 10000011111111000000---012333047652024--65--221234440378740355630011100111100000
Q ss_pred ECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 01369964999982799299996789983133149999638999978999999985178998369999689870347850
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH 594 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~ 594 (1015)
. .. ..++.++.|+.+++|+.........+..+...+.. +.+++..+++++.|+ .|++||...++.+..+.
T Consensus 145 ~--~~--~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg----~i~~~d~~~~~~~~~~~ 214 (342)
T d2ovrb2 145 Y--DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDT----SIRVWDVETGNCIHTLT 214 (342)
T ss_dssp E--CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTS----CEEEEETTTCCEEEEEC
T ss_pred C--CC--CEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCC--CCCCCCEEEEEECCC----EEEEEECCCCEEEEEEC
T ss_conf 1--33--30243358986999525234366787275444210--068999999995899----39995255653656741
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECC-CCCCCCCEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 789878489999279999999958982999968998236998258-9999854389728999999996799599998368
Q 001776 595 GLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDAD-GGLQASPCIRFNKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 595 ~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~ 673 (1015)
+|.. .+.++.++ ++++++++.|+.|++|+....+....+..+ .+...+.++.+ ++.++++++.||.|++||+.+
T Consensus 215 ~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 215 GHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp CCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTT
T ss_pred CCCC-CEEEEECC--CCEEEEECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCC--CCCEEEEECCCCEEEEEECCC
T ss_conf 6653-20577068--999999748988999865544221112210001101000013--798449990899899999999
Q ss_pred C
Q ss_conf 7
Q 001776 674 G 674 (1015)
Q Consensus 674 ~ 674 (1015)
+
T Consensus 290 g 290 (342)
T d2ovrb2 290 G 290 (342)
T ss_dssp C
T ss_pred C
T ss_conf 9
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-33 Score=244.45 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEE---
Q ss_conf 03899735997999971-9919999677871468-937999991699973899958999974981999982136289---
Q 001776 846 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMT-TFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVK--- 920 (1015)
Q Consensus 846 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~-~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~--- 920 (1015)
+.+++|+|+++++++++ |+.+++||+.+++... ....|...|++++|+| ++.++++++.|+.|++||+.++...
T Consensus 139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 332211111111111111111111111111111111111111111111111-1111111111111111111111111111
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 99717557767999927999999981898299998567
Q 001776 921 TKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDG 958 (1015)
Q Consensus 921 ~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~ 958 (1015)
..+.+|...|++++|+|++.+|++++.|+.|++||+.+
T Consensus 218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~ 255 (299)
T d1nr0a2 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 255 (299)
T ss_dssp CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCC
T ss_conf 11111111111112466645138882899799998999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-33 Score=243.09 Aligned_cols=288 Identities=11% Similarity=0.127 Sum_probs=120.8
Q ss_pred EEEEEC-CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 679840-6997437886368981999994587199997599623767533787516788554222356688887999982
Q 001776 349 VVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS 427 (1015)
Q Consensus 349 ~~~~l~-h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s 427 (1015)
+.+++. |.+.|++++|+|+++ ++++|+.||.|++||+.+++.... ...+|...|++++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~ 64 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTT 64 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEEC
T ss_pred CCEECCCCCCCCEEEEECCCCC-EEEEECCCCEEEEEECCCCCEEEE------------------ECCCCCCCEEEEEEE
T ss_conf 1368488887828999979999-999990899299999999968899------------------837887748998840
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCC
Q ss_conf 39998999987986999981189301123588223476549999449993599999389919999868994679950788
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHE 507 (1015)
Q Consensus 428 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~ 507 (1015)
|++.++ +++.|+.+++|+...............+...+.+++|++++. +++ ++.++.+.+|+.. +..... ..
T Consensus 65 ~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~-~~~~~~i~~~~~~--~~~~~~--~~ 136 (299)
T d1nr0a2 65 SKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAV-AACYKHIAIYSHG--KLTEVP--IS 136 (299)
T ss_dssp TTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEE-EEESSEEEEEETT--EEEEEE--CS
T ss_pred CCCEEE-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-CCCCCCCCCCCCC--CCCCCC--CC
T ss_conf 331121-023102688731677620111000111134432100112211--111-2222222111111--111101--11
Q ss_pred CCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEE-EECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCC
Q ss_conf 99799830136996499998279929999678998313-31499996389999789999999851789983699996898
Q 001776 508 SPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV-DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 508 ~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
..+.+++|+++ +.++++++.|+.+++||++...... ....+...+.+++|+|++.++++++.++ .+++||..+
T Consensus 137 ~~~~~~~~s~~--~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~ 210 (299)
T d1nr0a2 137 YNSSCVALSND--KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR----KVIPYSVAN 210 (299)
T ss_dssp SCEEEEEECTT--SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS----CEEEEEGGG
T ss_pred CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC
T ss_conf 12332211111--111111111111111111111111111111111111111111111111111111----111111111
Q ss_pred CEEEE---EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CCCCCEEEECCCCCEEEEEEC
Q ss_conf 70347---85078987848999927999999995898299996899823699825899-998543897289999999967
Q 001776 587 GAVKR---TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGG-LQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 587 ~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~i~~s~~~~~l~s~~~ 662 (1015)
+.... .+.+|.. .+.+++|+|++.++++++.|+.|++||+.++..........+ ...+.++.| +++.+|++++.
T Consensus 211 ~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~ 288 (299)
T d1nr0a2 211 NFELAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQ 288 (299)
T ss_dssp TTEESCCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEET
T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEEC
T ss_conf 111111111111111-1111124666451388828997999989999731489834898896899997-79899999928
Q ss_pred CCCEEEEEC
Q ss_conf 995999983
Q 001776 663 DNGIKILAN 671 (1015)
Q Consensus 663 dg~i~iw~~ 671 (1015)
|+.|++||+
T Consensus 289 D~~i~iWdl 297 (299)
T d1nr0a2 289 DSNIKFWNV 297 (299)
T ss_dssp TSCEEEEEC
T ss_pred CCEEEEEEC
T ss_conf 997999944
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.7e-32 Score=236.10 Aligned_cols=289 Identities=12% Similarity=0.174 Sum_probs=218.7
Q ss_pred CCEEEEEECCCCCEEEEEEECC-CEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC-CCCEEEEEECC--CCCE
Q ss_conf 9743788636898199999458-719999759962376753378751678855422235668-88879999823--9998
Q 001776 357 SAVKSMDFHPVQQILLVVGTNM-GDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDY-TASVNRVMWSP--DGTL 432 (1015)
Q Consensus 357 ~~V~~i~~sp~g~~lla~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~i~~sp--dg~~ 432 (1015)
..+++++|+|+++.+ +.++.+ ..|+.|+......... ..+.+| ...|++++|+| ++.+
T Consensus 18 ~~~t~l~~~~~~~~l-a~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTEE-EEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCEEEEEECCCCCEE-EEEECCCEEEEEEECCCCCCCCE-----------------EEEECCCCCCEEEEEEEECCCCCE
T ss_conf 984799998997999-99969987999976888876502-----------------899078999889999811799979
Q ss_pred EEEEECCCEEEEEECCCCCEEEEE-----EEEECCCCCEEEEEEECCCCCEEEEEEE--CCCEEEEEECCCCCEEEEEEC
Q ss_conf 999987986999981189301123-----5882234765499994499935999993--899199998689946799507
Q 001776 433 FGVAYSKHIVHLYTYHGGDELRNH-----LEIEAHVGSVNDLAFSYPNKQLSVVTCG--EDRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 433 las~~~dg~i~iwd~~~~~~~~~~-----~~l~~h~~~v~~i~~s~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~ 505 (1015)
|++|+.||+|++|++..+...... ..+..|.++|.+++|+++++ ++++++ .++.+++|+..+++.+..+.+
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWDSGNSLGEVSG 157 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCC--CCCEEECCCCCEEEEEEECCCCCCEEEEE
T ss_conf 9999489977985405886215651002541136567377999899988--22010012440478885023311001200
Q ss_pred CCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEE---CCCCCCEEEEEECCC-CCEEEEEEECCCCCCEEEE
Q ss_conf 889979983013699649999827992999967899831331---499996389999789-9999998517899836999
Q 001776 506 HESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDY---DAPGHSSTMMAYSAD-GARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 506 h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~s~~-~~~l~~~~~d~~~~~~i~i 581 (1015)
|...|.+++|.+..+ ..+++++.|+.+++|+....+..... ..+...+.+++|+|+ +.++++++.|+ .|++
T Consensus 158 h~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~----~i~i 232 (325)
T d1pgua1 158 HSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR----KISC 232 (325)
T ss_dssp CSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC----CEEE
T ss_pred CCCCCCCCCCCCCCC-CEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCC----CEEE
T ss_conf 123432111123432-06888621112211112211000000001577775277630345310000112332----1013
Q ss_pred EECCCCEEEEEEECCCCCCEEEEEEE---CCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCC-CCEE
Q ss_conf 96898703478507898784899992---7999999995898299996899823699825899998543897289-9999
Q 001776 582 WNESEGAVKRTYHGLGKRSVGVVQFD---TTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKE-GILL 657 (1015)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~i~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~-~~~l 657 (1015)
||.++++.+..+.+|.. .+..+.|+ +++.++++++.|+.|++||+.+++++..+..+.+...+..+++.+. +..+
T Consensus 233 wd~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311 (325)
T ss_dssp EETTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEE
T ss_pred EEECCCCCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEE
T ss_conf 43001222111111111-11110000003689999999589939999999997889999548740676999998899999
Q ss_pred EEEECCCCEEEEEC
Q ss_conf 99967995999983
Q 001776 658 AVSTNDNGIKILAN 671 (1015)
Q Consensus 658 ~s~~~dg~i~iw~~ 671 (1015)
++++.||.|++||+
T Consensus 312 ~s~s~dg~i~vwdl 325 (325)
T d1pgua1 312 ISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTSCEEEEET
T ss_pred EEEECCCEEEEEEC
T ss_conf 99979999999979
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-30 Score=223.33 Aligned_cols=119 Identities=15% Similarity=0.259 Sum_probs=52.4
Q ss_pred CCCCCCEEEECCCCCE-EEEEC-CCEEEEEECCCCCEEEEEC---CCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC
Q ss_conf 9998038997359979-99971-9919999677871468937---99999169997389995899997498199998213
Q 001776 842 PEDAVPCFALSKNDSY-VMSAS-GGKISLFNMMTFKTMTTFM---PPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV 916 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~-la~~s-dg~i~iwd~~~~~~~~~l~---~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~ 916 (1015)
|...+.+++|+|++.+ +++++ |+.+++|+..+.+....+. .|...|.+++|+|+.+.++++++.|+.|++||+.+
T Consensus 158 h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~ 237 (325)
T d1pgua1 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237 (325)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECC
T ss_conf 12343211112343206888621112211112211000000001577775277630345310000112332101343001
Q ss_pred CEEEEEECCCCCCEEEEEEE---CCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 62899971755776799992---799999998189829999856765
Q 001776 917 DEVKTKLKGHQKRITGLAFS---NTLNVLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 917 ~~~~~~l~~h~~~v~~l~~s---pdg~~l~s~s~dg~i~iWd~~~~~ 960 (1015)
++++..+.+|..++..+.|+ |++.+|++++.|+.|++||+.+++
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 284 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCC
T ss_conf 22211111111111110000003689999999589939999999997
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1e-29 Score=218.10 Aligned_cols=211 Identities=12% Similarity=-0.018 Sum_probs=150.1
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99999458719999759962376753378751678855422235668888799998239998999987986999981189
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~ 450 (1015)
++++.+.||+|.|||..+++.+.. +..+ ..+..++|||||+++++++.|+.+.+||+.++
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~ 93 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK 93 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred EEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 999976999799998999839999-------------------7379-97137998899999999828999789981089
Q ss_pred CEE--EEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 301--123588223476549999449993599999389919999868994679950788997998301369964999982
Q 001776 451 DEL--RNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (1015)
Q Consensus 451 ~~~--~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 528 (1015)
+.. .......+|.+.+.+.+|+|||++ ++++++.++.+++||..+++.+..+..+...+....+.+.+
T Consensus 94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (432)
T d1qksa2 94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP--------- 163 (432)
T ss_dssp SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC---------
T ss_pred CCEEEEEEECCCCCCCEEEECCCCCCCCE-EEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCC---------
T ss_conf 81288998448898776984321888888-99981789827999076554225402477643522016888---------
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEC
Q ss_conf 79929999678998313314999963899997899999998517899836999968987034785078987848999927
Q 001776 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 529 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~ 608 (1015)
....+.+++++..+++...+ ++.+.+|+..+.+.........+.....+.|+|
T Consensus 164 ------------------------~~~~v~~s~dg~~~~vs~~~---~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 164 ------------------------RVAAILASHYRPEFIVNVKE---TGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp ------------------------CEEEEEECSSSSEEEEEETT---TTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred ------------------------CEEEEEECCCCCEEEEEECC---CCEEEEEECCCCCCCEEEEECCCCCCCCCEECC
T ss_conf ------------------------50589987899989999816---882999984378752279983367542653889
Q ss_pred CCCEEEEEE-CCCCEEEEECCCCCEEEEEEC
Q ss_conf 999999995-898299996899823699825
Q 001776 609 TKNRFLAAG-DEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 609 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~ 638 (1015)
+++++++++ .++.+.+++..+++.+..+..
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 8879999516663677761445268887214
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.7e-28 Score=204.33 Aligned_cols=231 Identities=11% Similarity=0.009 Sum_probs=151.5
Q ss_pred ECCCCC-EEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEE
Q ss_conf 636898-1999994587199997599623767533787516788554222356688887999982399989999879869
Q 001776 364 FHPVQQ-ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIV 442 (1015)
Q Consensus 364 ~sp~g~-~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i 442 (1015)
++.+.+ .++++.+.||.|+|||+.+++.+.. +..| ..+..++|||||+++++++.|+.|
T Consensus 26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v 85 (426)
T d1hzua2 26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDARI 85 (426)
T ss_dssp SCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSEE
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEE-------------------EECC-CCEEEEEECCCCCEEEEEECCCCE
T ss_conf 16798708999975999799999999959999-------------------9689-980389998999999999589988
Q ss_pred EEEECCCCCEEEE--EEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCC
Q ss_conf 9998118930112--35882234765499994499935999993899199998689946799507889979983013699
Q 001776 443 HLYTYHGGDELRN--HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKEN 520 (1015)
Q Consensus 443 ~iwd~~~~~~~~~--~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 520 (1015)
++||+.+++.... .....+|.+.+.+++|+|||++ +++++..++.+.+||..++.+...+..+...+....+.+.+.
T Consensus 86 ~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (426)
T d1hzua2 86 DMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR 164 (426)
T ss_dssp EEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred EEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCC
T ss_conf 9997568860489998678887645885002688987-999635897699985776412578622677736436427885
Q ss_pred CCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEE-EECCCCC
Q ss_conf 649999827992999967899831331499996389999789999999851789983699996898703478-5078987
Q 001776 521 IQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRT-YHGLGKR 599 (1015)
Q Consensus 521 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~-~~~~~~~ 599 (1015)
...+..+.|+...++.... ...+.+++......... ...+. .
T Consensus 165 -~~~i~~s~d~~~~~~~~~~-----------------------------------~~~i~~~~~~~~~~~~~~~~~~~-~ 207 (426)
T d1hzua2 165 -VAAIIASHEHPEFIVNVKE-----------------------------------TGKVLLVNYKDIDNLTVTSIGAA-P 207 (426)
T ss_dssp -EEEEEECSSSSEEEEEETT-----------------------------------TTEEEEEECSSSSSCEEEEEECC-S
T ss_pred -EEEEEECCCCCEEEEECCC-----------------------------------CCEEEEEEECCCCCEEEEEECCC-C
T ss_conf -0389987878788885278-----------------------------------97699999246652045775667-7
Q ss_pred CEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECC
Q ss_conf 848999927999999995-89829999689982369982589999854389728
Q 001776 600 SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 600 ~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~ 652 (1015)
.+..+.++|++++++++. .+..+.+++..+++.+................+..
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEE
T ss_pred CCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEC
T ss_conf 537613778886788642011000000025562788750587444342011006
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=7.2e-30 Score=219.14 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCCCCCEEEECCCCCEEEEEC-CC---EEEEEECCCCCEEEEEC-------------CCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 999803899735997999971-99---19999677871468937-------------99999169997389995899997
Q 001776 842 PEDAVPCFALSKNDSYVMSAS-GG---KISLFNMMTFKTMTTFM-------------PPPPAATFLAFHPQDNNIIAIGM 904 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~s-dg---~i~iwd~~~~~~~~~l~-------------~~~~~i~~i~~sp~d~~~la~~~ 904 (1015)
|...|.+++|+|||++|++++ |+ .|++||+.+++.+..+. +|...|++++|+| ++++|++++
T Consensus 230 h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s 308 (393)
T d1sq9a_ 230 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG 308 (393)
T ss_dssp CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred CCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEEC
T ss_conf 2563877004665320112428988421001035321344431156666431023202358666001389-888069877
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCEE----EEEEECCCCEEEEEE
Q ss_conf 498199998213628999717557767----999927999999981
Q 001776 905 EDSSIQIYNVRVDEVKTKLKGHQKRIT----GLAFSNTLNVLVSSG 946 (1015)
Q Consensus 905 ~dg~i~iwd~~~~~~~~~l~~h~~~v~----~l~~spdg~~l~s~s 946 (1015)
.|++|++||+++++++.++.+|.+.|. .++|++++..+++++
T Consensus 309 ~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 309 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CCCEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECCCCCEEEECC
T ss_conf 9998999999999799999886876137734899999999999831
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-27 Score=203.33 Aligned_cols=348 Identities=9% Similarity=0.083 Sum_probs=192.5
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEE---EEEEEEECCCCCEEEEEEE---C-CC-CCEEEEEEEC
Q ss_conf 5668888799998239998999987986999981189301---1235882234765499994---4-99-9359999938
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDEL---RNHLEIEAHVGSVNDLAFS---Y-PN-KQLSVVTCGE 485 (1015)
Q Consensus 414 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~---~~~~~l~~h~~~v~~i~~s---~-~~-~~~~l~s~s~ 485 (1015)
..+|.+.|.++++++ +++++++.|+.|++|+..+.+.. ........|...+..+... + ++ ...++++++.
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 87 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF 87 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEC
T ss_conf 876367127999969--999999799969987898788776540467654204771676667500157998768999948
Q ss_pred CCEEEEEECCCCCEEE-----EE-----ECCCCCEEEEEECCCCC---CCEEEEEECCCEEEEEECCCCCCEEE-ECCCC
Q ss_conf 9919999868994679-----95-----07889979983013699---64999982799299996789983133-14999
Q 001776 486 DRVIKVWDAVTGTKQY-----IF-----EGHESPVYSICPHHKEN---IQFIFSTATDGKIKAWLYDNLGSRVD-YDAPG 551 (1015)
Q Consensus 486 dg~i~iwd~~~~~~~~-----~~-----~~h~~~v~~i~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~ 551 (1015)
||.+++|++....... .. ..+...+..+++.+..+ +.++++++.||.+++|++........ .....
T Consensus 88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 167 (393)
T d1sq9a_ 88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167 (393)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred CCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEE
T ss_conf 99199998228982056512456324311578966899984478865421799983898199987404775341023310
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 96389999789999999851789983699996898703478507898784899992799999999589829999689982
Q 001776 552 HSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVN 631 (1015)
Q Consensus 552 ~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~ 631 (1015)
..... +.. .......+. ..+.+++|+|++ ++++|+.|+.|++||+.+++
T Consensus 168 ~~~~~----------~~~-------------------~~~~~~~~~-~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~ 216 (393)
T d1sq9a_ 168 SPTLE----------LQG-------------------TVESPMTPS-QFATSVDISERG-LIATGFNNGTVQISELSTLR 216 (393)
T ss_dssp CCEEE----------EEE-------------------EECCSSSSC-CCCCEEEECTTS-EEEEECTTSEEEEEETTTTE
T ss_pred CCCEE----------CCC-------------------CEECCCCCC-CCEEEEEECCCC-EEEEEECCCCEEEEEECCCC
T ss_conf 32000----------145-------------------100025789-867899978999-89999389829998602332
Q ss_pred EEEEEEC----CCCCCCCCEEEECCCCCEEEEEECCCC---EEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 3699825----899998543897289999999967995---999983687300121037765422232101002665554
Q 001776 632 LLASIDA----DGGLQASPCIRFNKEGILLAVSTNDNG---IKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGT 704 (1015)
Q Consensus 632 ~~~~~~~----~~~~~~v~~i~~s~~~~~l~s~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1015)
.+..+.. .+|...|++++|+|++++|++++.|++ |++||+.++ ..+..+......
T Consensus 217 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~----------------- 278 (393)
T d1sq9a_ 217 PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS----------------- 278 (393)
T ss_dssp EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCEEEECCCCCC-EEEEEECCCCCC-----------------
T ss_conf 11000011111242563877004665320112428988421001035321-344431156666-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEE
Q ss_conf 46666666665554456332234578888777566654222233320111210125886135730488768761899999
Q 001776 705 FGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIY 784 (1015)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 784 (1015)
T Consensus 279 -------------------------------------------------------------------------------- 278 (393)
T d1sq9a_ 279 -------------------------------------------------------------------------------- 278 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-C
Q ss_conf 179728998015758999445666788898500014851017999752014688999999803899735997999971-9
Q 001776 785 TNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-G 863 (1015)
Q Consensus 785 s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-d 863 (1015)
......+.+ |...|++++|+||+++|++++ |
T Consensus 279 ----------------------------------------------~~~~~~~~g--H~~~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 279 ----------------------------------------------SQASLGEFA--HSSWVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp ---------------------------------------------------CCBS--BSSCEEEEEECSSSSEEEEEETT
T ss_pred ----------------------------------------------CCCEEEEEC--CCCCEEEECCCCCCCEEEEECCC
T ss_conf ----------------------------------------------431023202--35866600138988806987799
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEE----EEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCC
Q ss_conf 9199996778714689379999916----999738999589999749819999821362899971755776799992799
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAAT----FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTL 939 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i~----~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg 939 (1015)
++|++||+++++++.++.+|...|. .++|++ ++..+++++ ...++.+..+. .... .....
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~--------~~~~----~~~~~ 374 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPG---VFDVKFLKKGW--------RSGM----GADLN 374 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT-TSCBCSSCC---EEEEEEECTTT--------SBST----TCTTS
T ss_pred CEEEEEECCCCCEEEEECCCCCCCCCCCCEEEECC-CCCEEEECC---CCEEEECCCCC--------EECC----CCCCC
T ss_conf 98999999999799999886876137734899999-999999831---24699886676--------6312----36889
Q ss_pred CEEEEEECCCCEEEEEC
Q ss_conf 99999818982999985
Q 001776 940 NVLVSSGADSQLCVWST 956 (1015)
Q Consensus 940 ~~l~s~s~dg~i~iWd~ 956 (1015)
..+++++.|+.|++|.-
T Consensus 375 ~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 375 ESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp CEEEEEETTTEEEEEEE
T ss_pred CEEEEEECCCEEEEEEC
T ss_conf 97999991990899908
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.2e-26 Score=194.89 Aligned_cols=234 Identities=15% Similarity=0.273 Sum_probs=111.5
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 56688887999982399989999879869999811893011235882234765499994499935999993899199998
Q 001776 414 SSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 414 ~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd 493 (1015)
..+|...|+|++| |+++||+|+.||.|++||+.+++.+. ++.+|.+.|++++| +++ +|++|+.|+.+++|+
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred CCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEE---EEECCCCCEEEEEC--CCC--EEECCCCCCCCCCCC
T ss_conf 2899998899987--69999999289939999999991999---99267787763423--630--021001110110000
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEE---EECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 6899467995078899799830136996499998279929999678998313---3149999638999978999999985
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRV---DYDAPGHSSTMMAYSADGARLFSCG 570 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~ 570 (1015)
+..+........+........ ... ..++++..++.+.+|+........ ....+...+....+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLR--FNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEE--CCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCC--CCC--CCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEECC--CCCCCCC
T ss_conf 024641001111110000111--111--0000013566306861344544421210001135431100000--2201106
Q ss_pred ECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 17899836999968987034785078987848999927999999995898299996899823699825899998543897
Q 001776 571 TNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF 650 (1015)
Q Consensus 571 ~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~ 650 (1015)
.| +.+++||..+++.+..+.++.. .+..+.++ +..+++++.|+.|++||+.+...+.....+ ...+ ..+
T Consensus 156 ~d----~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v--~~~ 224 (293)
T d1p22a2 156 GD----RTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGH--EELV--RCI 224 (293)
T ss_dssp TT----SEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCE--EEE
T ss_pred CC----CCEEEECCCCCCEEEEECCCCC-CCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCC--CEEE--EEC
T ss_conf 99----8604100788838899715544-53221689--875887658998999866556146652143--1000--001
Q ss_pred CCCCCEEEEEECCCCEEEEECCC
Q ss_conf 28999999996799599998368
Q 001776 651 NKEGILLAVSTNDNGIKILANAD 673 (1015)
Q Consensus 651 s~~~~~l~s~~~dg~i~iw~~~~ 673 (1015)
++++.++++++.||.|++|++..
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHH
T ss_pred CCCCEEEEEECCCCEEEEEECCC
T ss_conf 45410799986799799998888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.8e-28 Score=209.42 Aligned_cols=110 Identities=9% Similarity=0.061 Sum_probs=52.5
Q ss_pred EEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC-CEEEEECCCCCEE
Q ss_conf 899997899999998517899836999968987034785078987848999927999999995898-2999968998236
Q 001776 555 TMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEF-MIKFWDMDNVNLL 633 (1015)
Q Consensus 555 ~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~ 633 (1015)
..+.+.+++..++.+.. ..+.+|+..++.....+.... . ..++++++..+++++.++ .+++|++......
T Consensus 84 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~ 154 (287)
T d1pgua2 84 KVASANNDGFTAVLTND-----DDLLILQSFTGDIIKSVRLNS--P--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS 154 (287)
T ss_dssp EEEEECSSSEEEEEETT-----SEEEEEETTTCCEEEEEECSS--C--EEEEEECSSEEEEEETTTSCEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEEEC-----CCCEEEECCCEEEEEECCCCC--E--EEEEECCCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 14664167856999603-----321000011003543101222--0--35652147511100022100021000122100
Q ss_pred EEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 99825899998543897289999999967995999983687
Q 001776 634 ASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 634 ~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~ 674 (1015)
..+.. .+...+++++|+|++.+|++++.||.|++|+..++
T Consensus 155 ~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~ 194 (287)
T d1pgua2 155 FDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR 194 (287)
T ss_dssp EECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEE-CCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCC
T ss_conf 01210-24785369995167652110111111000000233
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-27 Score=204.24 Aligned_cols=267 Identities=11% Similarity=0.160 Sum_probs=99.1
Q ss_pred EEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 1679840-699743788636898199999458719999759962376753378751678855422235668888799998
Q 001776 348 TVVMTLN-QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 348 ~~~~~l~-h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 426 (1015)
++++++. |..+|++++|+| +++|+.||+|++||+.++ ..+|...|.++++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred CEEEEECCCCCCEEEEEECC-----EEEEECCCEEEEEECCCC------------------------CCCCCCCEEEEEE
T ss_conf 03499988798649999895-----789848991999989998------------------------8887787899996
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 23999899998798699998118930112358822347654999944999359999938991999986899467995078
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 427 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 506 (1015)
++++ .+++++.|+++++|++...+ ....+.++.+++++. ++..+.++.+.+|+..++..+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF---TAVLTNDDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE---EEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCCC-EEEEEEECCCCCCCCCCCCC----------CCCCEEEEEECCCCC---EEEEEECCCCEEEECCCEEEEEECCCC
T ss_conf 5997-28988610122211111111----------122101466416785---699960332100001100354310122
Q ss_pred CCCEEEEEECCCCCCCEEEEEECC-CEEEEEECCCCCCEEEEC-CCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEEC
Q ss_conf 899799830136996499998279-929999678998313314-999963899997899999998517899836999968
Q 001776 507 ESPVYSICPHHKENIQFIFSTATD-GKIKAWLYDNLGSRVDYD-APGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNE 584 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~ 584 (1015)
..+.++. +.+ ..+++++.+ +.+++|++.......... .+...+.+++|+|++.++++++.++ .+++||.
T Consensus 121 -~~~~~~~--~~~--~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg----~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVS--LSQ--NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMG----KILLYDL 191 (287)
T ss_dssp -SCEEEEE--ECS--SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred -CEEEEEE--CCC--CCEEEECCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC----CCCCEEE
T ss_conf -2035652--147--511100022100021000122100012102478536999516765211011111----1000000
Q ss_pred CCCEEEEE-EECCCCCCEEEEEEECC----------CCEEEEEECCCCEEEEECCC-CCEEEEEECCCCCCCCCEEEECC
Q ss_conf 98703478-50789878489999279----------99999995898299996899-82369982589999854389728
Q 001776 585 SEGAVKRT-YHGLGKRSVGVVQFDTT----------KNRFLAAGDEFMIKFWDMDN-VNLLASIDADGGLQASPCIRFNK 652 (1015)
Q Consensus 585 ~~~~~~~~-~~~~~~~~i~~i~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~i~~s~ 652 (1015)
.++..... +.+|.. .+.+++|+|. +.++++++.|+.|++|++.. .+.+..+.+| ...|++++|++
T Consensus 192 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~ 268 (287)
T d1pgua2 192 QSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWET 268 (287)
T ss_dssp TTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEE
T ss_pred CCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCC--CCCEEEEEECC
T ss_conf 233211000111111-110000013654100126788702766499959998889997589992787--89858999989
Q ss_pred CCCEEEEEECCCCEEEEE
Q ss_conf 999999996799599998
Q 001776 653 EGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 653 ~~~~l~s~~~dg~i~iw~ 670 (1015)
++ .+++++.|+.|++|+
T Consensus 269 ~~-~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 269 PS-TLVSSGADACIKRWN 285 (287)
T ss_dssp TT-EEEEEETTSCEEEEE
T ss_pred CC-EEEEEECCCEEEEEE
T ss_conf 99-899997999299999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.5e-28 Score=208.41 Aligned_cols=219 Identities=11% Similarity=0.008 Sum_probs=139.1
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEE
Q ss_conf 35668888799998239998999987986999981189301123588223476549999449993599999389919999
Q 001776 413 LSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVW 492 (1015)
Q Consensus 413 ~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iw 492 (1015)
+..+|++.|++++|+|++++||+|+.||+|+|||+.++..........+|..+|.+++|++++.. ++++|+.|+.|++|
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCC-EEEECCCCCCEEEE
T ss_conf 68899897888999589999999979992999975699863689885589998899999589997-89981265311454
Q ss_pred ECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 86899467995078899799830136996499998279929999678998313314999963899997899999998517
Q 001776 493 DAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTN 572 (1015)
Q Consensus 493 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 572 (1015)
++..+........+........+.... ...+++++.++.+++||++......... ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~--------------------~~-- 141 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAV--------------------KN-- 141 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEE--------------------EE--
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCEEEE--------------------CC--
T ss_conf 204432000001111111111111111-1111110122211102023444330230--------------------00--
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEEC-CCCCCCCCEEEEC
Q ss_conf 899836999968987034785078987848999927999999995898299996899823699825-8999985438972
Q 001776 573 KEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDA-DGGLQASPCIRFN 651 (1015)
Q Consensus 573 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~i~~s 651 (1015)
.... ..........+.+.+..+++++.|+.|++|++........... ........+..+.
T Consensus 142 -----------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (342)
T d1yfqa_ 142 -----------LNSN--------NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202 (342)
T ss_dssp -----------SCSS--------SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC
T ss_pred -----------CCCC--------CCCCEEEEEEEECCCCCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEE
T ss_conf -----------2430--------012000001000168702465179847887605676341112102542210146763
Q ss_pred C-CCCEEEEEECCCCEEEEECCCC
Q ss_conf 8-9999999967995999983687
Q 001776 652 K-EGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 652 ~-~~~~l~s~~~dg~i~iw~~~~~ 674 (1015)
+ ++..+++++.||.+.+|+....
T Consensus 203 ~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 203 PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SGGGCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCEEEEECCCCEEEEEEECCC
T ss_conf 699987886548995999980598
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=6.5e-28 Score=205.53 Aligned_cols=362 Identities=10% Similarity=0.006 Sum_probs=219.0
Q ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCE--EEEEE-
Q ss_conf 399989999879869999811893011235882234765499994499935999993899199998689946--79950-
Q 001776 428 PDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK--QYIFE- 504 (1015)
Q Consensus 428 pdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~- 504 (1015)
++.-++++.+.+|.|.+||..+++.+. .+..+ ..+..++|||||+ ++++++.|+.+.+||+.+++. ...+.
T Consensus 30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~ 103 (432)
T d1qksa2 30 LENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103 (432)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCEEEEEECCCCEEEEEECCCCCEEE---EEECC-CCEEEEEECCCCC--EEEEECCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 782899997699979999899983999---97379-9713799889999--99998289997899810898128899844
Q ss_pred --CCCCCEEEEEECCCCCCCEE-EEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEE
Q ss_conf --78899799830136996499-998279929999678998313314999963899997899999998517899836999
Q 001776 505 --GHESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVE 581 (1015)
Q Consensus 505 --~h~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~i 581 (1015)
+|.+.+.+..| +++|+++ +++..++.+++||..+.+.......+...+....+.++
T Consensus 104 ~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~------------------- 162 (432)
T d1qksa2 104 GSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE------------------- 162 (432)
T ss_dssp CSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC-------------------
T ss_pred CCCCCCEEEECCC--CCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCC-------------------
T ss_conf 8898776984321--8888889998178982799907655422540247764352201688-------------------
Q ss_pred EECCCCEEEEEEECCCCCCEEEEEEECCCCEEEE-EECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 9689870347850789878489999279999999-958982999968998236998258999985438972899999999
Q 001776 582 WNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLA-AGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~ 660 (1015)
.....+.+++++..++. ...++.|.+|+..+.+......... ......++|+|+|++++++
T Consensus 163 -----------------~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~va 224 (432)
T d1qksa2 163 -----------------PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITA 224 (432)
T ss_dssp -----------------CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEE
T ss_pred -----------------CCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECC-CCCCCCCEECCCCCEEEEE
T ss_conf -----------------8505899878999899998168829999843787522799833-6754265388988799995
Q ss_pred E-CCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-799599998368730012103776542223210100266555446666666665554456332234578888777566
Q 001776 661 T-NDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDV 739 (1015)
Q Consensus 661 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1015)
+ .++.+.+++..++ +....+.......
T Consensus 225 ~~~~~~v~v~d~~~~-~~~~~~~~g~~~~--------------------------------------------------- 252 (432)
T d1qksa2 225 ANARNKLVVIDTKEG-KLVAIEDTGGQTP--------------------------------------------------- 252 (432)
T ss_dssp EGGGTEEEEEETTTT-EEEEEEECSSSSB---------------------------------------------------
T ss_pred CCCCCEEEEEECCCC-EEEEEECCCCCCC---------------------------------------------------
T ss_conf 166636777614452-6888721486224---------------------------------------------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCCCCCCCEEC
Q ss_conf 65422223332011121012588613573048876876189999917972899801-57589994456667888985000
Q 001776 740 KPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILALA-SNAVHKLWKWPRNERNSTGKATT 818 (1015)
Q Consensus 740 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~ 818 (1015)
+........+...+....+.. .++.+.+|.....
T Consensus 253 -----------------------------------~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---------- 287 (432)
T d1qksa2 253 -----------------------------------HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE---------- 287 (432)
T ss_dssp -----------------------------------CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT----------
T ss_pred -----------------------------------CCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCC----------
T ss_conf -----------------------------------56766410148988310213568835876245665----------
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf 14851017999752014688999999803899735997999971-99199996778714689379999916999738999
Q 001776 819 NQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 897 (1015)
Q Consensus 819 ~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~ 897 (1015)
. ... +...+....+++++..+++++ ++..++|...+.. .+......+++ | |+
T Consensus 288 ------------~-----~~~--~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg 340 (432)
T d1qksa2 288 ------------G-----HPD--NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DI 340 (432)
T ss_dssp ------------T-----CTT--TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EG
T ss_pred ------------C-----CCC--CCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCC------CCCCEEEEEEE-E-EC
T ss_conf ------------5-----546--56577799886899768887268864102112678------88770359999-9-62
Q ss_pred CEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCC
Q ss_conf 5899997498199998213628999717557767999927999999981-----898299998567651
Q 001776 898 NIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSG-----ADSQLCVWSTDGWEK 961 (1015)
Q Consensus 898 ~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s-----~dg~i~iWd~~~~~~ 961 (1015)
+.+++++.|+.+++|++.++..+ ..|...+.+++|||||++++.+. .++.|.|||..+++.
T Consensus 341 ~~la~~s~d~~~k~w~~~~~~~l---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 341 KAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp GGCCCSSSCCCEEEECHHHHHTC---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred HHHCCCCCCCCEEECCCCCCCCC---CCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCEE
T ss_conf 46104556784486334344445---7899868976798999999999704888888689999999558
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.1e-28 Score=206.90 Aligned_cols=284 Identities=9% Similarity=0.096 Sum_probs=137.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC-CCEE
Q ss_conf 699743788636898199999458719999759962376753378751678855422235668888799998239-9989
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD-GTLF 433 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd-g~~l 433 (1015)
|.+.|++++|+|+++ +|++|+.||+|+|||+..+....... ...+|..+|.+++|+|+ +.+|
T Consensus 10 h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f~~~~~~~l 72 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNFIDNTDLQI 72 (342)
T ss_dssp CSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEEEESSSEEE
T ss_pred CCCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCEEEE----------------EECCCCCCEEEEEEECCCCCEE
T ss_conf 989788899958999-99999799929999756998636898----------------8558999889999958999789
Q ss_pred EEEECCCEEEEEECCCCCEEEEEEEEECCC-CCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEE----EEEECCCC
Q ss_conf 999879869999811893011235882234-7654999944999359999938991999986899467----99507889
Q 001776 434 GVAYSKHIVHLYTYHGGDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQ----YIFEGHES 508 (1015)
Q Consensus 434 as~~~dg~i~iwd~~~~~~~~~~~~l~~h~-~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h~~ 508 (1015)
++|+.|+.|++|+...+.... ....+. .......+.++.. .+++++.|+.+++||++.+... .....+..
T Consensus 73 ~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EECCCCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCC
T ss_conf 981265311454204432000---00111111111111111111--1111012221110202344433023000243001
Q ss_pred --CEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEE---ECCCCCCEEEEEECC-CCCEEEEEEECCCCCCEEEEE
Q ss_conf --97998301369964999982799299996789983133---149999638999978-999999985178998369999
Q 001776 509 --PVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVD---YDAPGHSSTMMAYSA-DGARLFSCGTNKEGESYLVEW 582 (1015)
Q Consensus 509 --~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~-~~~~l~~~~~d~~~~~~i~iw 582 (1015)
......+.+.. ..+++++.|+.+++|++........ .........+..+.+ ++..+++++.++ .+.+|
T Consensus 148 ~~~~~~~~~~~~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg----~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDTNS--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG----RVAVE 221 (342)
T ss_dssp SSCCCEEEEEECS--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS----EEEEE
T ss_pred CCEEEEEEEECCC--CCEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCC----EEEEE
T ss_conf 2000001000168--70246517984788760567634111210254221014676369998788654899----59999
Q ss_pred ECCCCEEE------EEE---------ECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCE
Q ss_conf 68987034------785---------078987848999927999999995898299996899823699825899998543
Q 001776 583 NESEGAVK------RTY---------HGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPC 647 (1015)
Q Consensus 583 d~~~~~~~------~~~---------~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 647 (1015)
+....... ..+ ..+. ..+.+++|+|++.+|++|+.||.|++||+.+++.+..+..+ .....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~---~~~~~ 297 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLA-YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---NEDSV 297 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSC-CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC---SSSEE
T ss_pred EECCCCCEEECCCCCEEEEEEECCCCCCCC-CCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCC---CCCEE
T ss_conf 805986401112351256555314777623-54315996698447999879998999999989498870589---99879
Q ss_pred EEECCCCCEEEEEECCCCEEEEE
Q ss_conf 89728999999996799599998
Q 001776 648 IRFNKEGILLAVSTNDNGIKILA 670 (1015)
Q Consensus 648 i~~s~~~~~l~s~~~dg~i~iw~ 670 (1015)
++|++++..+++++.|+.+++|.
T Consensus 298 ~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 298 VKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCS
T ss_pred EEEEECCCEEEEEECCCCEEEEE
T ss_conf 99994799999999199278830
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=4.7e-27 Score=199.57 Aligned_cols=202 Identities=10% Similarity=0.065 Sum_probs=105.4
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEE--EEE---CC
Q ss_conf 8999987986999981189301123588223476549999449993599999389919999868994679--950---78
Q 001776 432 LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY--IFE---GH 506 (1015)
Q Consensus 432 ~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~---~h 506 (1015)
++++...||.|++||+.+++.+. ++..|. .+..++|+|||+ ++++++.|+++++||+.+++... .+. +|
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~---~l~~g~-~~~~vafSPDGk--~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVK---VIDTGY-AVHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEE---EEECCS-SEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred EEEEECCCCEEEEEECCCCCEEE---EEECCC-CEEEEEECCCCC--EEEEEECCCCEEEEECCCCCEEEEEEEECCCCC
T ss_conf 99997599979999999995999---996899-803899989999--999995899889997568860489998678887
Q ss_pred CCCEEEEEECCCCCCCEE-EEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
Q ss_conf 899799830136996499-9982799299996789983133149999638999978999999985178998369999689
Q 001776 507 ESPVYSICPHHKENIQFI-FSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNES 585 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~ 585 (1015)
...+.++.|+| +|+++ +++..++.+.+||............+...+....+.+++..
T Consensus 108 ~~~~~s~~~sp--DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 165 (426)
T d1hzua2 108 RSVESSKFKGY--EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV-------------------- 165 (426)
T ss_dssp EEEEECCSTTC--TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE--------------------
T ss_pred CCEEEEEEECC--CCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCE--------------------
T ss_conf 64588500268--89879996358976999857764125786226777364364278850--------------------
Q ss_pred CCEEEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE-CC
Q ss_conf 87034785078987848999927999999995-89829999689982369982589999854389728999999996-79
Q 001776 586 EGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-ND 663 (1015)
Q Consensus 586 ~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~d 663 (1015)
..+..++++..++... ..+.+.+++............ .....+..+.|+|++++++++. .+
T Consensus 166 ----------------~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~ 228 (426)
T d1hzua2 166 ----------------AAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAANNS 228 (426)
T ss_dssp ----------------EEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEETTC
T ss_pred ----------------EEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEE-CCCCCCEEEEECCCCCEEEEEEECC
T ss_conf ----------------38998787878888527897699999246652045775-6677537613778886788642011
Q ss_pred CCEEEEECCCCCEEEE
Q ss_conf 9599998368730012
Q 001776 664 NGIKILANADGIRLLR 679 (1015)
Q Consensus 664 g~i~iw~~~~~~~~~~ 679 (1015)
..+.+++..++ ....
T Consensus 229 ~~~~~~~~~~~-~~~~ 243 (426)
T d1hzua2 229 NKVAVIDSKDR-RLSA 243 (426)
T ss_dssp SEEEEEETTTT-EEEE
T ss_pred CCEEEEECCCC-CEEE
T ss_conf 00000002556-2788
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.2e-26 Score=192.96 Aligned_cols=268 Identities=21% Similarity=0.327 Sum_probs=178.0
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 69974378863689819999945871999975996237675337875167885542223566888879999823999899
Q 001776 355 QGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG 434 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la 434 (1015)
|...|+|++| +++ ++++|+.||+|+|||+.+++.+.. +.+|.+.|++++| ++++|+
T Consensus 14 ~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--~~~~l~ 69 (293)
T d1p22a2 14 TSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--DERVII 69 (293)
T ss_dssp SCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--CSSEEE
T ss_pred CCCCEEEEEE--CCC-EEEEEECCCEEEEEECCCCCEEEE-------------------EECCCCCEEEEEC--CCCEEE
T ss_conf 9998899987--699-999992899399999999919999-------------------9267787763423--630021
Q ss_pred EEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCE---EEEEECCCCCEE
Q ss_conf 99879869999811893011235882234765499994499935999993899199998689946---799507889979
Q 001776 435 VAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTK---QYIFEGHESPVY 511 (1015)
Q Consensus 435 s~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~h~~~v~ 511 (1015)
+|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+|+...... ...+..|...+.
T Consensus 70 s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 142 (293)
T d1p22a2 70 TGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 142 (293)
T ss_dssp EEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCCCCCCC--CEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 00111011000002464100---1111110--0001111110--000013566306861344544421210001135431
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEE
Q ss_conf 98301369964999982799299996789983133149999638999978999999985178998369999689870347
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKR 591 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~ 591 (1015)
...+.. ..+++++.|+.+++|+.++......+..+...+..+.++ +..+++++.|+ .+++||..+...+.
T Consensus 143 ~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg----~i~i~d~~~~~~~~ 212 (293)
T d1p22a2 143 VVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN----TIRLWDIECGACLR 212 (293)
T ss_dssp EEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTS----CEEEEETTTCCEEE
T ss_pred CCEECC----CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCC----EEEEEECCCCEEEE
T ss_conf 100000----220110699860410078883889971554453221689--87588765899----89998665561466
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCC---------CCEEEEEECCCCCCCCCEEEECCCCCEEEEEEC
Q ss_conf 85078987848999927999999995898299996899---------823699825899998543897289999999967
Q 001776 592 TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN---------VNLLASIDADGGLQASPCIRFNKEGILLAVSTN 662 (1015)
Q Consensus 592 ~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~ 662 (1015)
.+.++.. .+. .+.+++..+++++.||.|++||+.. ...+..+..| ...|++++|+ +.+|++++.
T Consensus 213 ~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 213 VLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp EECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEEC--SSCEEECCS
T ss_pred EECCCCE-EEE--ECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCC--CCCEEEEEEC--CCEEEEEEC
T ss_conf 5214310-000--01454107999867997999988888644456775455784588--9988999971--999999922
Q ss_pred CCCEEEEE
Q ss_conf 99599998
Q 001776 663 DNGIKILA 670 (1015)
Q Consensus 663 dg~i~iw~ 670 (1015)
||+|++||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEC
T ss_conf 99899959
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=3.6e-28 Score=207.34 Aligned_cols=201 Identities=14% Similarity=0.099 Sum_probs=122.7
Q ss_pred EEEEECC-CCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 3788636-898199999458719999759962376753378751678855422235668888799998239998999987
Q 001776 360 KSMDFHP-VQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS 438 (1015)
Q Consensus 360 ~~i~~sp-~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~ 438 (1015)
..-.||| ||+ ++|+++ +|.|++|+..++..+. .+|...|.+++|+|||++|++++.
T Consensus 6 ~~~~fSP~dG~-~~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGG-CEEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred HCCCCCCCCCC-EEEEEE-CCEEEEEECCCCCEEE---------------------CCCCCCEEEEEECCCCCEEEEEEC
T ss_conf 00514688999-999998-9969999899994899---------------------169998888999899999999992
Q ss_pred CC--EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 98--6999981189301123588223476549999449993599999389919999868994679950788997998301
Q 001776 439 KH--IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPH 516 (1015)
Q Consensus 439 dg--~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~ 516 (1015)
+. .|++|+..+++.. .+..|...|.+++|+|+++ ++++++.++.+++|++.+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCCEE----EEECCCCEEEEEEECCCCC--CCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHC
T ss_conf 89989999989999488----7508971277412114543--21000111110000012221000000135520230121
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 36996499998279929999678998313314999963899997899999998517899836999968987034785078
Q 001776 517 HKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGL 596 (1015)
Q Consensus 517 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~ 596 (1015)
+++ ++++.+..+.... ..+..+..+++|+..+++.......
T Consensus 137 pdg--~~la~~~~~~~~~------------------------------------~~~~~~~~~~v~d~~~~~~~~~~~~- 177 (360)
T d1k32a3 137 DNS--RFIAYGFPLKHGE------------------------------------TDGYVMQAIHVYDMEGRKIFAATTE- 177 (360)
T ss_dssp TTS--CEEEEEEEECSST------------------------------------TCSCCEEEEEEEETTTTEEEECSCS-
T ss_pred CCE--EEEEEECCCCCCC------------------------------------EEECCCCCEEEECCCCCCEEEECCC-
T ss_conf 322--5665212331211------------------------------------0002565426630455713530354-
Q ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 987848999927999999995898299996899
Q 001776 597 GKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 597 ~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1015)
.. ....+.|+|+++.+++++.++.+.+|+...
T Consensus 178 ~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 178 NS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp SS-BEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CC-CCCCCCCCCCCCEEEEEECCCCEECCCCCC
T ss_conf 32-211001257799999995998557533354
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=8.6e-29 Score=211.66 Aligned_cols=201 Identities=14% Similarity=0.068 Sum_probs=153.1
Q ss_pred EEEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECC--CEEEEEECCCCCE
Q ss_conf 999823-9998999987986999981189301123588223476549999449993599999389--9199998689946
Q 001776 423 RVMWSP-DGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGED--RVIKVWDAVTGTK 499 (1015)
Q Consensus 423 ~i~~sp-dg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~d--g~i~iwd~~~~~~ 499 (1015)
.-.||| ||+++|+++ +|.|++|++.++...+ + +|...|.+++|+|||+ .|++++.+ ..+++||+.+++.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEE----C-CCCCCEEEEEECCCCC--EEEEEECCCCCEEEEEECCCCCE
T ss_conf 0514688999999998-9969999899994899----1-6999888899989999--99999928998999998999948
Q ss_pred EEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEE
Q ss_conf 79950788997998301369964999982799299996789983133149999638999978999999985178998369
Q 001776 500 QYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYL 579 (1015)
Q Consensus 500 ~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i 579 (1015)
. .+..|...+.+++|+|++ +++++++.++.+++|+............+...+.+++|+|+|++++.+..+...
T Consensus 79 ~-~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~---- 151 (360)
T d1k32a3 79 E-KFEENLGNVFAMGVDRNG--KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG---- 151 (360)
T ss_dssp E-ECCCCCCSEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS----
T ss_pred E-EEECCCCEEEEEEECCCC--CCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCC----
T ss_conf 8-750897127741211454--321000111110000012221000000135520230121322566521233121----
Q ss_pred EEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEE
Q ss_conf 99968987034785078987848999927999999995898299996899823699825899998543897289999999
Q 001776 580 VEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAV 659 (1015)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s 659 (1015)
.+.+..++.+++|+..+++...... +...+..++|+|+|+.|++
T Consensus 152 ---------------------------------~~~~~~~~~~~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~ 195 (360)
T d1k32a3 152 ---------------------------------ETDGYVMQAIHVYDMEGRKIFAATT---ENSHDYAPAFDADSKNLYY 195 (360)
T ss_dssp ---------------------------------TTCSCCEEEEEEEETTTTEEEECSC---SSSBEEEEEECTTSCEEEE
T ss_pred ---------------------------------CEEECCCCCEEEECCCCCCEEEECC---CCCCCCCCCCCCCCCEEEE
T ss_conf ---------------------------------1000256542663045571353035---4322110012577999999
Q ss_pred EECCCCEEEEECCCC
Q ss_conf 967995999983687
Q 001776 660 STNDNGIKILANADG 674 (1015)
Q Consensus 660 ~~~dg~i~iw~~~~~ 674 (1015)
++.++.+.+|+....
T Consensus 196 ~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 196 LSYRSLDPSPDRVVL 210 (360)
T ss_dssp EESCCCCCEECSSSS
T ss_pred EECCCCEECCCCCCC
T ss_conf 959985575333544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=9.8e-22 Score=162.51 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=208.1
Q ss_pred EEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE-EEECCCEEEEEECC
Q ss_conf 19999945871999975996237675337875167885542223566888879999823999899-99879869999811
Q 001776 370 ILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFG-VAYSKHIVHLYTYH 448 (1015)
Q Consensus 370 ~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~la-s~~~dg~i~iwd~~ 448 (1015)
++.++++.|++|.+||+.+++.+... .....+..++|+|||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i--------------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATI--------------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEE--------------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEE--------------------ECCCCCEEEEEECCCCEEEEEECCCCEEEEEECC
T ss_conf 99999789998999999999599999--------------------8899836999928989999997899989999999
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEE
Q ss_conf 89301123588223476549999449993599999389919999868994679950788997998301369964999982
Q 001776 449 GGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTA 528 (1015)
Q Consensus 449 ~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~ 528 (1015)
+++.+. .+..+. .+..++|++++.. .++++..++.+.+|+..+++....+..+ ....++.+.+++. ..++++.
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~ 135 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN 135 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred CCCEEE---EEECCC-CCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCEEEEECCCC-CCCEEEEEECCCC-EEEEEEC
T ss_conf 894103---200024-6431100011111-1111111100110012430243202444-4423787605897-1554201
Q ss_pred CCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEC
Q ss_conf 79929999678998313314999963899997899999998517899836999968987034785078987848999927
Q 001776 529 TDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDT 608 (1015)
Q Consensus 529 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~ 608 (1015)
.++.+.+|+..+.......... .....+.+++++..++++..+ ...+.+|+.............. ....+.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 209 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA--APSGIAVNP 209 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS--EEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEECCCC-CCCEEEEEECCCCCEEEECCC---CCCCCCCCCCCEEEEECCCCCC--CCCEEECCC
T ss_conf 1110011000146303531567-884288860465401310121---1111111111000111013357--750311011
Q ss_pred CCCEEEEEE---CCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEE-EEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf 999999995---8982999968998236998258999985438972899999-9996799599998368730012103
Q 001776 609 TKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILANADGIRLLRTVE 682 (1015)
Q Consensus 609 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~ 682 (1015)
++..++.++ .++.|++||..+++.+..+..+ ..+.+++|+|||+++ ++++.++.|++||+.++ +++..+.
T Consensus 210 ~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~---~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~~ 283 (301)
T d1l0qa2 210 EGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATMA 283 (301)
T ss_dssp TSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC---CCEEEEEEECCCCEEEEEECCCCEEEEEECCCC-EEEEEEE
T ss_conf 1101111002100002323656998199998489---987799991898999999899996999999999-5999996
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=3.4e-19 Score=144.86 Aligned_cols=333 Identities=10% Similarity=-0.001 Sum_probs=201.1
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEE------
Q ss_conf 66888879999823999899998-----7986999981189301123588223476549999449993599999------
Q 001776 415 SDYTASVNRVMWSPDGTLFGVAY-----SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTC------ 483 (1015)
Q Consensus 415 ~~h~~~V~~i~~spdg~~las~~-----~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~------ 483 (1015)
..+..++.+++++|||+.+++.. ..+.|.+||..+++.+. ++..+..+ .++|+|||+ +++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~--~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGS--EFALASTSFSR 89 (373)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEE---EEECCCCC--CEEECCCCC--EEEEEEECCCC
T ss_conf 567898656301899978999734225787659999899997999---99579886--079868999--89999605775
Q ss_pred ----ECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEE
Q ss_conf ----3899199998689946799507889979983013699649999827992999967899831331499996389999
Q 001776 484 ----GEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAY 559 (1015)
Q Consensus 484 ----s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 559 (1015)
..++.|.+||..+++.+..+..+.......... + ..+.|
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~--~-----------------------------------~~~~~ 132 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY--S-----------------------------------WMNAN 132 (373)
T ss_pred CCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCC--C-----------------------------------CCEEE
T ss_conf 3212453189999777893888972688513685168--9-----------------------------------70899
Q ss_pred CCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEE-EEEECCCCEEEEECCCCCEEEEEEC
Q ss_conf 789999999851789983699996898703478507898784899992799999-9995898299996899823699825
Q 001776 560 SADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRF-LAAGDEFMIKFWDMDNVNLLASIDA 638 (1015)
Q Consensus 560 s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~ 638 (1015)
+++++.+++...+. ...+.+|+....+...... ...++.++|++..+ ++.+.|+.+.+|+...+........
T Consensus 133 s~dg~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~ 205 (373)
T d2madh_ 133 TPNNADLLFFQFAA--GPAVGLVVQGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG 205 (373)
T ss_pred EECCCCEEEEEECC--CCCEEEEECCCCEEEEEEC-----CCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEE
T ss_conf 85899379999869--8746776236872899824-----5206999628991999994799399997477426678863
Q ss_pred CC----CCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 89----99985438972899999999679959999836873001210377654222321010026655544666666666
Q 001776 639 DG----GLQASPCIRFNKEGILLAVSTNDNGIKILANADGIRLLRTVESRTFDASRVASAAIVKAPAIGTFGSANANVGT 714 (1015)
Q Consensus 639 ~~----~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1015)
.. .........+.+++. ++..+.++.+.+|+...+. ......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~-------------------------------- 251 (373)
T d2madh_ 206 AMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG-ATNKAP-------------------------------- 251 (373)
T ss_pred ECCCCCCCCEEEEEEECCCCE-EEEECCCCEEEEEECCCCE-EEEEEE--------------------------------
T ss_conf 003667530434588789942-9992589659999768990-789776--------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEE
Q ss_conf 55544563322345788887775666542222333201112101258861357304887687618999991797289980
Q 001776 715 SLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLTAMRVSRLIYTNSGLAILAL 794 (1015)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~dg~~l~~~ 794 (1015)
|+. +........+.|.+...+..
T Consensus 252 ---------------------------------------~~~------------------~~~~~~~~~~~~~~~~~~~~ 274 (373)
T d2madh_ 252 ---------------------------------------IDA------------------LSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred ---------------------------------------ECC------------------CCCCEEEEEECCCCCEEEEE
T ss_conf ---------------------------------------305------------------64757866413674133577
Q ss_pred CCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEC-CCEEEEEECCC
Q ss_conf 15758999445666788898500014851017999752014688999999803899735997999971-99199996778
Q 001776 795 ASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKNDSYVMSAS-GGKISLFNMMT 873 (1015)
Q Consensus 795 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg~~la~~s-dg~i~iwd~~~ 873 (1015)
+.++... ..+.+++..++... ++.+.+||..+
T Consensus 275 ~~d~~~~-----------------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t 307 (373)
T d2madh_ 275 LKSSDGI-----------------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLV 307 (373)
T ss_pred ECCCCEE-----------------------------------------------EEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 1499759-----------------------------------------------99548882478625898699998999
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCC--EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 7146893799999169997389995--8999974981999982136289997175577679999279
Q 001776 874 FKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938 (1015)
Q Consensus 874 ~~~~~~l~~~~~~i~~i~~sp~d~~--~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spd 938 (1015)
++.+..+. +...+..++|+| ||+ ++++++.|+.|++||+.+++.+.++.++......+++.++
T Consensus 308 ~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 308 GQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEECC
T ss_conf 96989866-899825899998-999899999679992999999999899998888989818998468
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=9.3e-23 Score=169.63 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCEEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCE
Q ss_conf 99199996778714689-37999991699973899958999974981999982136289997175577679999279999
Q 001776 863 GGKISLFNMMTFKTMTT-FMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNV 941 (1015)
Q Consensus 863 dg~i~iwd~~~~~~~~~-l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 941 (1015)
++.+.+|+..++..... +..+......+++++ ++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~ 293 (337)
T d1pbyb_ 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGST 293 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCE
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEEEEECCCCCE
T ss_conf 761799986888588898328875058887426-61399973--5528999898896999974-8998899999789999
Q ss_pred EEEEECCCCEEEEECCCCCCC
Q ss_conf 999818982999985676510
Q 001776 942 LVSSGADSQLCVWSTDGWEKQ 962 (1015)
Q Consensus 942 l~s~s~dg~i~iWd~~~~~~~ 962 (1015)
|++++.|+.|++||..+++..
T Consensus 294 l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 294 VWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEE
T ss_pred EEEEECCCCEEEEECCCCCEE
T ss_conf 999949992999999987698
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=4.9e-20 Score=150.72 Aligned_cols=112 Identities=14% Similarity=0.167 Sum_probs=49.2
Q ss_pred CCEEEECCCCCEEEEEC--CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECC---CEEEEEECCCCEEE
Q ss_conf 03899735997999971--99199996778714689379999916999738999589999749---81999982136289
Q 001776 846 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMED---SSIQIYNVRVDEVK 920 (1015)
Q Consensus 846 v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~d---g~i~iwd~~~~~~~ 920 (1015)
+..++++++++.+++++ ++.+.+|+....+....+. .......++|++ ++..++++..+ +.|++||+.+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~ 237 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (301)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CEEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCC-CCCCCCEEECCC-CCCCCCCCCCCCEEEEEEEEECCCCEEE
T ss_conf 42888604654013101211111111111000111013-357750311011-1101111002100002323656998199
Q ss_pred EEECCCCCCEEEEEEECCCCEE-EEEECCCCEEEEECCCCC
Q ss_conf 9971755776799992799999-998189829999856765
Q 001776 921 TKLKGHQKRITGLAFSNTLNVL-VSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 921 ~~l~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iWd~~~~~ 960 (1015)
..+..+ ..+..++|+|||++| ++++.|+.|++||+++++
T Consensus 238 ~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 238 ARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEECCC-CCEEEEEEECCCCEEEEEECCCCEEEEEECCCCE
T ss_conf 998489-9877999918989999998999969999999995
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=6.4e-21 Score=156.85 Aligned_cols=78 Identities=9% Similarity=-0.069 Sum_probs=57.0
Q ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEE-CCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 9982399989999879869999811893011235882-234765499994499935999993899199998689946799
Q 001776 424 VMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIE-AHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYI 502 (1015)
Q Consensus 424 i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~-~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 502 (1015)
++|+++++++++++.++.|.+||+.+++.+. ++. .+...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEE---EEECCCCCCCCEEEECCCCCE-EEEEECCCCCEEEEECCCCEEEEE
T ss_conf 5588999699998699979999999998999---999489997045999789899-999978999399996756713123
Q ss_pred EEC
Q ss_conf 507
Q 001776 503 FEG 505 (1015)
Q Consensus 503 ~~~ 505 (1015)
+..
T Consensus 78 ~~~ 80 (346)
T d1jmxb_ 78 ANL 80 (346)
T ss_dssp EES
T ss_pred ECC
T ss_conf 103
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=7.5e-21 Score=156.36 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=69.8
Q ss_pred CCCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEE
Q ss_conf 99980389973599799997199199996778714689379999916999738999589999749819999821362899
Q 001776 842 PEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKT 921 (1015)
Q Consensus 842 ~~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~ 921 (1015)
+...+..+++++++.+++.. ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.|+.|++||.++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~ 315 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCEEEEEECCCCEEEEEC-CCCEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEE
T ss_conf 87505888742661399973-5528999898896999974-899889999978-99999999499929999999876989
Q ss_pred EECCC
Q ss_conf 97175
Q 001776 922 KLKGH 926 (1015)
Q Consensus 922 ~l~~h 926 (1015)
++...
T Consensus 316 ~i~~~ 320 (337)
T d1pbyb_ 316 QVDLP 320 (337)
T ss_dssp EEECG
T ss_pred EEECC
T ss_conf 99889
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=4e-21 Score=158.26 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=39.5
Q ss_pred CCCCCEEEECCCCCEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEE
Q ss_conf 99803899735997999971991999967787146893799999169997389995899997498199998213628999
Q 001776 843 EDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTK 922 (1015)
Q Consensus 843 ~~~v~~l~~s~dg~~la~~sdg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~ 922 (1015)
...+..+.+++++.+++...++.+.+||..+++.+..+. +...+.+++|+| ||+++++++.|+.|++||.++++.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEECCCCEEEEECCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEE
T ss_conf 660688897179978999429838999899993999974-999778999968-999999994899299999965879799
Q ss_pred ECC
Q ss_conf 717
Q 001776 923 LKG 925 (1015)
Q Consensus 923 l~~ 925 (1015)
+..
T Consensus 329 i~~ 331 (346)
T d1jmxb_ 329 IKL 331 (346)
T ss_dssp EEC
T ss_pred EEC
T ss_conf 988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.91 E-value=4.2e-18 Score=137.25 Aligned_cols=159 Identities=8% Similarity=-0.030 Sum_probs=89.0
Q ss_pred CCCCEEEEEECCCCCEEEEEE----ECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 699743788636898199999----4587199997599623767533787516788554222356688887999982399
Q 001776 355 QGSAVKSMDFHPVQQILLVVG----TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDG 430 (1015)
Q Consensus 355 h~~~V~~i~~sp~g~~lla~g----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg 430 (1015)
+..++..++++|||++++++. +.++.|.+||..+++.+.. +..+.. ..++|||||
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpDG 77 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHSG 77 (373)
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEE-------------------EECCCC--CCEEECCCC
T ss_conf 78986563018999789997342257876599998999979999-------------------957988--607986899
Q ss_pred CEEEEEEC----------CCEEEEEECCCCCEEEEEEEEECCCCC-------EEEEEEECCCCCEEEEEEECCCEEEEEE
Q ss_conf 98999987----------986999981189301123588223476-------5499994499935999993899199998
Q 001776 431 TLFGVAYS----------KHIVHLYTYHGGDELRNHLEIEAHVGS-------VNDLAFSYPNKQLSVVTCGEDRVIKVWD 493 (1015)
Q Consensus 431 ~~las~~~----------dg~i~iwd~~~~~~~~~~~~l~~h~~~-------v~~i~~s~~~~~~~l~s~s~dg~i~iwd 493 (1015)
++|++++. ++.|.+||..+++... .+..+... ...+.|+++++.+++.....++.+.+|+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~ 154 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEE---EEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEE
T ss_conf 9899996057753212453189999777893888---9726885136851689708998589937999986987467762
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 6899467995078899799830136996499998279929999678998
Q 001776 494 AVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLG 542 (1015)
Q Consensus 494 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 542 (1015)
....+...... ...++.+.+++. ..+++.+.|+.+.+|+.....
T Consensus 155 ~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~ 198 (373)
T d2madh_ 155 QGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGA 198 (373)
T ss_pred CCCCEEEEEEC----CCEEEEEECCCC-CEEEEECCCCEEEEEECCCCE
T ss_conf 36872899824----520699962899-199999479939999747742
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=8.5e-19 Score=142.06 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=40.6
Q ss_pred EEEEEECCCCCEEEEECCCCCCEEEEEECCCCCC--EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECC
Q ss_conf 1999967787146893799999169997389995--8999974981999982136289997175577679999279
Q 001776 865 KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN--IIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNT 938 (1015)
Q Consensus 865 ~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~--~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spd 938 (1015)
.|.+||..+++.+..+. +...+.+++|+| ||+ +++++..|+.|++||+++++.+.++.++......+.+.++
T Consensus 281 ~v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 281 FVVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred EEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCEEEECCC
T ss_conf 59998678884989966-899877999928-999699999789998999999999899999286979658996999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=9.4e-18 Score=134.77 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=23.4
Q ss_pred EEEEEECCCCEEEEEECCCCCCEEEEEEECCCC--EEEEEECCCCEEEEECCCCC
Q ss_conf 199998213628999717557767999927999--99998189829999856765
Q 001776 908 SIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN--VLVSSGADSQLCVWSTDGWE 960 (1015)
Q Consensus 908 ~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~--~l~s~s~dg~i~iWd~~~~~ 960 (1015)
.|.+||..+++.+..+.. ...+.+++|+|||+ ++++++.|+.|++||+.+++
T Consensus 281 ~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 281 FVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCC
T ss_conf 599986788849899668-998779999289996999997899989999999998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3.3e-17 Score=131.00 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=66.9
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-CCEEEEEECCC
Q ss_conf 99999458719999759962376753378751678855422235668888799998239998999987-98699998118
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-KHIVHLYTYHG 449 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-dg~i~iwd~~~ 449 (1015)
++++++.|++|++|++.+...+.... ...|.+.+..++|||||++|++++. |+.|.+|++..
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~ 68 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEE-----------------EECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEEC
T ss_conf 99987899938999983999769999-----------------9757998868999589799999977899699999968
Q ss_pred CCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEE-CCCEEEEEECCCCCEEEE--EECCCCCEEEEEECCCCCCCEEEE
Q ss_conf 93011235882234765499994499935999993-899199998689946799--507889979983013699649999
Q 001776 450 GDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIKVWDAVTGTKQYI--FEGHESPVYSICPHHKENIQFIFS 526 (1015)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~~~l~s 526 (1015)
............+...+..++|+|||+ ++++++ .++.+.+|+......... ...+...+.++.++++. +.++.
T Consensus 69 ~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~--~~~~~ 144 (333)
T d1ri6a_ 69 DDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN--RTLWV 144 (333)
T ss_dssp TTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS--SEEEE
T ss_pred CCCCEEEEEECCCCCCCEEEEECCCCC--EEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECC--EEEEC
T ss_conf 987079853013699854999959998--87420568883022001110000001003778531498863010--13102
Q ss_pred EE-CCCEEEEEECCC
Q ss_conf 82-799299996789
Q 001776 527 TA-TDGKIKAWLYDN 540 (1015)
Q Consensus 527 ~~-~dg~i~iwd~~~ 540 (1015)
++ .+..+.+|+...
T Consensus 145 ~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 145 PALKQDRICLFTVSD 159 (333)
T ss_dssp EEGGGTEEEEEEECT
T ss_pred CCCCCCEEEEEEECC
T ss_conf 565542056897326
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=3e-17 Score=131.28 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=70.6
Q ss_pred EEEEECCCEEEEEECCCCCCEE--EECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEE--CCCCC
Q ss_conf 9998279929999678998313--3149999638999978999999985178998369999689870347850--78987
Q 001776 524 IFSTATDGKIKAWLYDNLGSRV--DYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYH--GLGKR 599 (1015)
Q Consensus 524 l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~--~~~~~ 599 (1015)
+++++.|+.|++|+++..+... ....+...+..++|+|||++|++++. .++.|.+|++........+. .....
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEC---CCCEEEEEEEECCCCCEEEEEECCCCC
T ss_conf 99878999389999839997699999757998868999589799999977---899699999968987079853013699
Q ss_pred CEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 848999927999999995-89829999689982369982589999854389728999999996-7995999983687
Q 001776 600 SVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADG 674 (1015)
Q Consensus 600 ~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iw~~~~~ 674 (1015)
....++|+|+++++++++ .++.+.+|+..............+...+.++.++++++.++.+. .+..+.+|+....
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~ 160 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD 160 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCC
T ss_conf 85499995999887420568883022001110000001003778531498863010131025655420568973268
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.81 E-value=1.3e-15 Score=119.86 Aligned_cols=164 Identities=15% Similarity=0.190 Sum_probs=110.7
Q ss_pred EEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC--
Q ss_conf 788636898199999458719999759962376753378751678855422235668888799998239998999987--
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-- 438 (1015)
Q Consensus 361 ~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-- 438 (1015)
.+.|.++++ ++. ..|+.+.+||+.+++.... +....+..|...|.++.|||||++|+.++.
T Consensus 21 ~~~W~~d~~-~~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHE-YLY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSE-EEE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEECCCCE-EEE--ECCCCEEEEECCCCCEEEE--------------ECHHHHHHCCCCCCEEEECCCCCEEEEEECCC
T ss_conf 789689997-999--7599499998899978999--------------70156443167654059989889799997771
Q ss_pred -------CCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf -------9869999811893011235882234765499994499935999993899199998689946799507889979
Q 001776 439 -------KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 439 -------dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1015)
++.+.+||+.+++.. .+..+...+..+.|||||+ .++.. .++.+++|+...+...+....+...+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~- 155 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDI- 155 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTT-
T ss_pred CEEEECCCCEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCC--EEEEE-ECCCCEEEECCCCCEEEEEECCCCCC-
T ss_conf 0001046734999989888513----1246874231010146764--13575-14641379889994653210147774-
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 983013699649999827992999967899831331499996389999789999999851789
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 574 (1015)
+..+..| |. .. .........+.|+|||+.++....|..
T Consensus 156 ------------~~~g~~d-----~~-------~~-~~~~~~~~~~~wSPDGk~ia~~~~d~~ 193 (470)
T d2bgra1 156 ------------IYNGITD-----WV-------YE-EEVFSAYSALWWSPNGTFLAYAQFNDT 193 (470)
T ss_dssp ------------EEESBCC-----HH-------HH-HHTSSSSBCEEECTTSSEEEEEEEECT
T ss_pred ------------CCCCCCC-----EE-------EE-EEECCCCCCCEECCCCCCCCEEEECCC
T ss_conf ------------0535432-----01-------12-100477653079999872202686377
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=2.9e-14 Score=110.45 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=34.3
Q ss_pred EEEECCCCCEEEEEECCCEEEEEECCCCCEEEEE--EEEECCCCCEEEEEEECCCCCEEEEEEE
Q ss_conf 9998239998999987986999981189301123--5882234765499994499935999993
Q 001776 423 RVMWSPDGTLFGVAYSKHIVHLYTYHGGDELRNH--LEIEAHVGSVNDLAFSYPNKQLSVVTCG 484 (1015)
Q Consensus 423 ~i~~spdg~~las~~~dg~i~iwd~~~~~~~~~~--~~l~~h~~~v~~i~~s~~~~~~~l~s~s 484 (1015)
.+.|.+|+.++.. .++.+.+|++.+++....+ ..+..|...|.++.||||++ +|+.++
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~--~i~~~~ 80 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQ--FILLEY 80 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSS--EEEEEE
T ss_pred CCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCC--EEEEEE
T ss_conf 7896899979997--59949999889997899970156443167654059989889--799997
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.74 E-value=1.1e-14 Score=113.42 Aligned_cols=18 Identities=0% Similarity=-0.086 Sum_probs=6.8
Q ss_pred CCEEEEEECCCCCEEEEE
Q ss_conf 991999986899467995
Q 001776 486 DRVIKVWDAVTGTKQYIF 503 (1015)
Q Consensus 486 dg~i~iwd~~~~~~~~~~ 503 (1015)
++.+.+||+.+++....+
T Consensus 145 ~~~v~~~d~~~~~~~~~~ 162 (368)
T d1mdah_ 145 SSAAAGLSVPGASDDQLT 162 (368)
T ss_dssp SSCEEEEEETTTEEEEEE
T ss_pred CCEEEEEECCCCCEEEEE
T ss_conf 985999989989386786
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.4e-14 Score=112.60 Aligned_cols=114 Identities=12% Similarity=-0.046 Sum_probs=53.2
Q ss_pred EECCCCCEEEE-EEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE----------CCCCEEEEE
Q ss_conf 99789999999-8517899836999968987034785078987848999927999999995----------898299996
Q 001776 558 AYSADGARLFS-CGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG----------DEFMIKFWD 626 (1015)
Q Consensus 558 ~~s~~~~~l~~-~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~----------~dg~i~iwd 626 (1015)
+..++++.... ...+.++...+++||..+++.+.....+.. . .+.|+|+++.+++.+ .|+.|.+||
T Consensus 26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D 102 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102 (368)
T ss_dssp CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred CCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCC-C--CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 558987612697204578862179970899837788857877-7--5139899988999755676401035678699998
Q ss_pred CCCCCEEEEEECCCCC-----CCCCEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 8998236998258999-----9854389728999999996-7995999983687
Q 001776 627 MDNVNLLASIDADGGL-----QASPCIRFNKEGILLAVST-NDNGIKILANADG 674 (1015)
Q Consensus 627 ~~~~~~~~~~~~~~~~-----~~v~~i~~s~~~~~l~s~~-~dg~i~iw~~~~~ 674 (1015)
..+++.+..+..+... .....++|+|||++++++. .++.+.+||+.++
T Consensus 103 ~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~ 156 (368)
T d1mdah_ 103 PVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156 (368)
T ss_dssp TTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTT
T ss_pred CCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCC
T ss_conf 999938306437854210246886405887899899999689985999989989
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.65 E-value=2.6e-15 Score=117.78 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=14.3
Q ss_pred EEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999994587199997599623767
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAV 394 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~~~~~~~~~ 394 (1015)
.+++|+.+|+|.+|++.+++.+..
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~ 36 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMR 36 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEE
T ss_pred EEEECCCCCCEEEEECCCCCEEEE
T ss_conf 999688777489996789807999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.59 E-value=7.7e-16 Score=121.47 Aligned_cols=265 Identities=11% Similarity=0.058 Sum_probs=139.1
Q ss_pred EEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCC--EEEEEECC--------------
Q ss_conf 99997899999998517899836999968987034785078987848999927999--99999589--------------
Q 001776 556 MMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKN--RFLAAGDE-------------- 619 (1015)
Q Consensus 556 ~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~l~~~~~d-------------- 619 (1015)
....+|||+++++... .+.+|.++|+.+++....+..........++|+|+++ +++..+.+
T Consensus 76 ~t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~ 152 (441)
T d1qnia2 76 MTDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD 152 (441)
T ss_dssp EETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred EECCCCCCCEEEEECC---CCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 1032688888999738---9997999988778475579567887864348705699899995667754436766300145
Q ss_pred ---CCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCC-EEEEECCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf ---8299996899823699825899998543897289999999967995-999983687300121037765422232101
Q 001776 620 ---FMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNG-IKILANADGIRLLRTVESRTFDASRVASAA 695 (1015)
Q Consensus 620 ---g~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1015)
..+..+|..+.+....+...+ ....+.++|+|+++++.+.+.. +..++..+. ...
T Consensus 153 ~~~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~----------------- 211 (441)
T d1qnia2 153 NSYTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR----------------- 211 (441)
T ss_dssp GEEEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB-----------------
T ss_pred CCCCEEEEECCCCCEEEEEEECCC---CCCCEEECCCCCEEEEEECCCCCEEEEECCCC-CEE-----------------
T ss_conf 553238866375560647873699---86546987999989998517873189851571-217-----------------
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCC
Q ss_conf 00266555446666666665554456332234578888777566654222233320111210125886135730488768
Q 001776 696 IVKAPAIGTFGSANANVGTSLGERTAPAAAMVGMSNDSRNFTDVKPKIADEAVEKSRIWKLTEITEPSQCRSLRLPDNLT 775 (1015)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 775 (1015)
..+.+.+..
T Consensus 212 -----------------------------------------------------d~i~v~n~p------------------ 220 (441)
T d1qnia2 212 -----------------------------------------------------DWVVVFNVE------------------ 220 (441)
T ss_dssp -----------------------------------------------------CEEEEEEHH------------------
T ss_pred -----------------------------------------------------EEEEECCCC------------------
T ss_conf -----------------------------------------------------899968851------------------
Q ss_pred CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 76189999917972899801575899944566678889850001485101799975201468899999980389973599
Q 001776 776 AMRVSRLIYTNSGLAILALASNAVHKLWKWPRNERNSTGKATTNQAPQLWQPPSGILMTNDISDTNPEDAVPCFALSKND 855 (1015)
Q Consensus 776 ~~~i~~l~~s~dg~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~v~~l~~s~dg 855 (1015)
..+.++++|+++..+ .++.+.++.. .....+.. ++ -......+.++|||
T Consensus 221 ----~~~~~~~dGk~~~v~-~~~v~vvd~~----------------------~~~~v~~~-IP---vgksPhGv~vSPDG 269 (441)
T d1qnia2 221 ----RIAAAVKAGNFKTIG-DSKVPVVDGR----------------------GESEFTRY-IP---VPKNPHGLNTSPDG 269 (441)
T ss_dssp ----HHHHHHHTTCCBCCT-TCCCCEEECS----------------------SSCSSEEE-EC---CBSSCCCEEECTTS
T ss_pred ----CEEEEECCCCEEEEC-CCCCEEEECC----------------------CCCCEEEE-EE---CCCCCCCCEECCCC
T ss_conf ----107996699999969-9982899803----------------------68706899-71---79886672689998
Q ss_pred CEEEEEC--CCEEEEEECCCCCE-----------EEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCC------
Q ss_conf 7999971--99199996778714-----------6893799999169997389995899997498199998213------
Q 001776 856 SYVMSAS--GGKISLFNMMTFKT-----------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRV------ 916 (1015)
Q Consensus 856 ~~la~~s--dg~i~iwd~~~~~~-----------~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~------ 916 (1015)
+++++++ +++|.+||+.+... +.......-.....+|++ +|..+.+.+.|..|..|++..
T Consensus 270 kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~ 348 (441)
T d1qnia2 270 KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYN 348 (441)
T ss_dssp CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHT
T ss_pred CEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHC
T ss_conf 7899907759938999832244575256884247996014554766522657-855998524431689723542213322
Q ss_pred ----CEEEEEE-----CCCCCCEEEEEEECCCCEEEEEEC
Q ss_conf ----6289997-----175577679999279999999818
Q 001776 917 ----DEVKTKL-----KGHQKRITGLAFSNTLNVLVSSGA 947 (1015)
Q Consensus 917 ----~~~~~~l-----~~h~~~v~~l~~spdg~~l~s~s~ 947 (1015)
...+..+ .||...+.+.+++|||+||++++.
T Consensus 349 ~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 349 GDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp TCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 6777656864532668987752454223898848996574
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.57 E-value=5.2e-10 Score=80.89 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=31.0
Q ss_pred EEEEEEECCCCEEEEEE-CCCCEEEEECCCCC-EE--EEEECCCCCCCCCEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 48999927999999995-89829999689982-36--9982589999854389728999999996-7995999983687
Q 001776 601 VGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVN-LL--ASIDADGGLQASPCIRFNKEGILLAVST-NDNGIKILANADG 674 (1015)
Q Consensus 601 i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~--~~~~~~~~~~~v~~i~~s~~~~~l~s~~-~dg~i~iw~~~~~ 674 (1015)
+.++.|+|++++++++. ....|.+|+..... .. ..............++|+|+++++.+.. .++.|.+|+...+
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf 1597888999989982079987999970688716652511112788740899988998669995158998999995598
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.3e-10 Score=85.10 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=61.5
Q ss_pred EECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC----
Q ss_conf 8636898199999458719999759962376753378751678855422235668888799998239998999987----
Q 001776 363 DFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS---- 438 (1015)
Q Consensus 363 ~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~---- 438 (1015)
.|.+++. ++. -..+|.+.+||+.+++...... . ..-....+....||||+++++....
T Consensus 23 ~W~~~~~-~~~-~~~~g~i~~~~~~~~~~~~l~~--------------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTE-FIY-REQKGTVRLWNVETNTSTVLIE--------------G--KKIESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSC-BCC-CCSSSCEEEBCGGGCCCEEEEC--------------T--TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEECCCC-EEE-EECCCCEEEEECCCCCEEEEEC--------------C--CCCCCCCCCEEEECCCCCEEEEEECCCCE
T ss_conf 8917984-899-9289969999878998899872--------------7--64444553213898988869999845100
Q ss_pred -----CCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEE
Q ss_conf -----986999981189301123588223476549999449993599999389919999868994679
Q 001776 439 -----KHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQY 501 (1015)
Q Consensus 439 -----dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 501 (1015)
.+...++|+.++.... +.........+....|||||+. ++... ++.+.+.+...+..++
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~ 148 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIR 148 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEE
T ss_pred EEEECCCCEEEEECCCCCEEE-CCCCCCCCCCCCEEEECCCCCE--EEEEE-CCEEEEEECCCCCEEE
T ss_conf 476033528999856884564-1576677643110024267856--99996-1329999548996589
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.5e-08 Score=70.68 Aligned_cols=221 Identities=12% Similarity=0.096 Sum_probs=86.3
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC---EEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEE-CCCEEE-
Q ss_conf 6888879999823999899998798---69999811893011235882234765499994499935999993-899199-
Q 001776 416 DYTASVNRVMWSPDGTLFGVAYSKH---IVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCG-EDRVIK- 490 (1015)
Q Consensus 416 ~h~~~V~~i~~spdg~~las~~~dg---~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s-~dg~i~- 490 (1015)
.+...+...+|||||+.||...... .+.+.+..++... .+..+........|+|+++. ++... .++...
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~--i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSK--LAFALSKTGSLNL 109 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSE--EEEEECTTSSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE----EEEEEECCCCCCEECCCCCE--EEEEEECCCCCCE
T ss_conf 58984260388789998999981526751344311367506----77642024543024488986--4676402786410
Q ss_pred -EEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCE--EEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEE
Q ss_conf -998689946799507889979983013699649999827992--99996789983133149999638999978999999
Q 001776 491 -VWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGK--IKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLF 567 (1015)
Q Consensus 491 -iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 567 (1015)
.+......... ............+.+... ..+++...++. +...+...... ..............|+|+++.++
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 110 YVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEETTTCCEEE-CCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred EECCCCCCCCEE-EEECCCCCCCCCCCCCCC-CCEECCCCCCCCEEEEEECCCCCC-EEEECCCCCCCCCCCCCCCCEEE
T ss_conf 000222122000-010144211454345544-330000126874386542133100-01000122223432234543057
Q ss_pred EEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE---CCCCEEEEECCCCCEEEEEECCCCCCC
Q ss_conf 98517899836999968987034785078987848999927999999995---898299996899823699825899998
Q 001776 568 SCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG---DEFMIKFWDMDNVNLLASIDADGGLQA 644 (1015)
Q Consensus 568 ~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 644 (1015)
....+. +...+.+.+...+..... . ... ......|+|||+.|+..+ ....++++++..+.... +... ...
T Consensus 187 ~~~~~~-~~~~i~~~~~~~~~~~~~-~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~ 259 (269)
T d2hqsa1 187 MVSSNG-GQQHIAKQDLATGGVQVL-S-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQ 259 (269)
T ss_dssp EEEECS-SCEEEEEEETTTCCEEEC-C-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSE
T ss_pred EEEECC-CCEEEEEEECCCCCCEEE-E-CCC-CCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEE-EECC--CCC
T ss_conf 786058-801256760356440585-0-686-54455898999999999817998479999999997799-8579--985
Q ss_pred CCEEEECC
Q ss_conf 54389728
Q 001776 645 SPCIRFNK 652 (1015)
Q Consensus 645 v~~i~~s~ 652 (1015)
+...+|+|
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
T ss_conf 88378289
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.37 E-value=1.1e-08 Score=71.72 Aligned_cols=29 Identities=21% Similarity=0.032 Sum_probs=12.1
Q ss_pred CEEEEEEECCCCEEEEEE-CCCCEEEEECC
Q ss_conf 848999927999999995-89829999689
Q 001776 600 SVGVVQFDTTKNRFLAAG-DEFMIKFWDMD 628 (1015)
Q Consensus 600 ~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~ 628 (1015)
....+.|+|+++++++.. .++.|.+|++.
T Consensus 194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 194 HPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf 408999889986699951589989999955
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.35 E-value=2.2e-08 Score=69.51 Aligned_cols=251 Identities=12% Similarity=0.122 Sum_probs=134.4
Q ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 41679840699743788636898199999458719999759962376753378751678855422235668888799998
Q 001776 347 KTVVMTLNQGSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMW 426 (1015)
Q Consensus 347 ~~~~~~l~h~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~ 426 (1015)
.+.+..+.-...+..++++|||+ ++++...++.|..|+....... +......+.+++|
T Consensus 18 ~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla~ 75 (302)
T d2p4oa1 18 AKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLAF 75 (302)
T ss_dssp EEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEEE
T ss_pred CCEEEECCCCCCCCCEEECCCCC-EEEEECCCCEEEEEECCCCEEE---------------------EECCCCCCCEEEE
T ss_conf 20788888998847877999988-9999688998999908998899---------------------9717998536898
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECC
Q ss_conf 23999899998798699998118930112358822347654999944999359999938991999986899467995078
Q 001776 427 SPDGTLFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 427 spdg~~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h 506 (1015)
++||+++++...++.+..|+......................+++.+++. ++++.+.++.+..++...+.........
T Consensus 76 ~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~~ 153 (302)
T d2p4oa1 76 TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEHP 153 (302)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEECG
T ss_pred CCCCCEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCC--EEEECCCCCCCEEEECCCCCCEEEECCC
T ss_conf 67788699832895378887101111012102357863221667715797--8750356554102421687303675188
Q ss_pred CCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCC
Q ss_conf 89979983013699649999827992999967899831331499996389999789999999851789983699996898
Q 001776 507 ESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESE 586 (1015)
Q Consensus 507 ~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~ 586 (1015)
.... ............+.+. +..++.+.. ....++.++...
T Consensus 154 ~~~~----------------------------------~~~~~~~~~~ngi~~~--~~~l~~~~~---~~~~i~~~~~~~ 194 (302)
T d2p4oa1 154 MLAR----------------------------------SNSESVFPAANGLKRF--GNFLYVSNT---EKMLLLRIPVDS 194 (302)
T ss_dssp GGSC----------------------------------SSTTCCSCSEEEEEEE--TTEEEEEET---TTTEEEEEEBCT
T ss_pred CCCE----------------------------------EECCCCCCCCCCCCCC--CCCEEEECC---CCCEEEECCCCC
T ss_conf 6401----------------------------------4315763224320116--983044037---887698634433
Q ss_pred CEEEE---EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEE---CCCCCEEEEE
Q ss_conf 70347---85078987848999927999999995898299996899823699825899998543897---2899999999
Q 001776 587 GAVKR---TYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRF---NKEGILLAVS 660 (1015)
Q Consensus 587 ~~~~~---~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~---s~~~~~l~s~ 660 (1015)
..... .+... .....+++.++|+.+++...++.|..++.. ++..............++++| ++|++.|+.+
T Consensus 195 ~~~~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 195 TDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp TSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred CCCCCCCCCCCCC--CCCCCEEECCCCCEEEEECCCCCEEEECCC-CCEEEEEECCCCCCCCEEEEECCCCCCCCEEEEE
T ss_conf 3323453101589--987523787999999997489918998789-9789999637898882489970878878989999
Q ss_pred ECC
Q ss_conf 679
Q 001776 661 TND 663 (1015)
Q Consensus 661 ~~d 663 (1015)
+..
T Consensus 272 t~~ 274 (302)
T d2p4oa1 272 TNG 274 (302)
T ss_dssp ECT
T ss_pred CCC
T ss_conf 889
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=5.2e-08 Score=66.94 Aligned_cols=16 Identities=0% Similarity=0.017 Sum_probs=6.1
Q ss_pred EEEEEEECCCCEEEEE
Q ss_conf 4899992799999999
Q 001776 601 VGVVQFDTTKNRFLAA 616 (1015)
Q Consensus 601 i~~i~~~~~~~~l~~~ 616 (1015)
+...+|+|||+.|+..
T Consensus 41 ~~sP~wSPDGk~IAf~ 56 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYV 56 (269)
T ss_dssp EEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEE
T ss_conf 2603887899989999
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.2e-07 Score=64.54 Aligned_cols=108 Identities=10% Similarity=0.090 Sum_probs=60.8
Q ss_pred CCEEEEEECCCCCEEEEEE--------ECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 9743788636898199999--------45871999975996237675337875167885542223566888879999823
Q 001776 357 SAVKSMDFHPVQQILLVVG--------TNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSP 428 (1015)
Q Consensus 357 ~~V~~i~~sp~g~~lla~g--------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~sp 428 (1015)
..+....||||++.+++.. +..+.+.++|+.++...... ........+....|||
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~-----------------~~~~~~~~l~~~~wSP 123 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLD-----------------PPEVSNAKLQYAGWGP 123 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECC-----------------CTTCCSCCCSBCCBCS
T ss_pred CCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECC-----------------CCCCCCCCCCEEEECC
T ss_conf 55321389898886999984510047603352899985688456415-----------------7667764311002426
Q ss_pred CCCEEEEEECCCEEEEEECCCCCEEEEEE------EEECCC---------CCEEEEEEECCCCCEEEEEEE
Q ss_conf 99989999879869999811893011235------882234---------765499994499935999993
Q 001776 429 DGTLFGVAYSKHIVHLYTYHGGDELRNHL------EIEAHV---------GSVNDLAFSYPNKQLSVVTCG 484 (1015)
Q Consensus 429 dg~~las~~~dg~i~iwd~~~~~~~~~~~------~l~~h~---------~~v~~i~~s~~~~~~~l~s~s 484 (1015)
||+.+|... ++.+.+.+..++...+... .+.+.. +.-..+.|||||+ .|+...
T Consensus 124 DG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk--~iaf~~ 191 (465)
T d1xfda1 124 KGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT--RLAYAA 191 (465)
T ss_dssp STTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS--EEEEEE
T ss_pred CCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCC--EEEEEE
T ss_conf 785699996-13299995489965897112676604436643100123036643489779898--689999
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=1.8e-07 Score=63.23 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=10.2
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 79999823999899998798699998
Q 001776 421 VNRVMWSPDGTLFGVAYSKHIVHLYT 446 (1015)
Q Consensus 421 V~~i~~spdg~~las~~~dg~i~iwd 446 (1015)
+..++++|||+++++...++.|..|+
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~ 55 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSIT 55 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCEEECCCCCEEEEECCCCEEEEEE
T ss_conf 47877999988999968899899990
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.09 E-value=3.9e-07 Score=60.83 Aligned_cols=244 Identities=8% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEC
Q ss_conf 6888879999823999-899998798699998118930112358822347654999944999359999938991999986
Q 001776 416 DYTASVNRVMWSPDGT-LFGVAYSKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDA 494 (1015)
Q Consensus 416 ~h~~~V~~i~~spdg~-~las~~~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~ 494 (1015)
.+......++++++|+ +++..+..+.+..++........ ....-......+++++++. ++++....+.+++++-
T Consensus 11 ~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~gvav~~~g~--i~v~d~~~~~i~~~~~ 85 (260)
T d1rwia_ 11 DFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDFNNRVVTLAAG 85 (260)
T ss_dssp CSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE---CCCCSCCSCCCEEECTTCC--EEEEETTTEEEEECTT
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEE---ECCCCCCCCEEEEECCCCC--EEEEEEEECEEEEEEE
T ss_conf 7769878899969999999971899889999389966897---4369866840899938998--8986310000355421
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 89946799507889979983013699649999827992999967899831331499996389999789999999851789
Q 001776 495 VTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1015)
Q Consensus 495 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 574 (1015)
.++..+.... .......+++.+.+ +++++-..+..+..++...................+++.++++.+++...+.
T Consensus 86 ~~~~~~~~~~-~~~~p~~iavd~~g--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~- 161 (260)
T d1rwia_ 86 SNNQTVLPFD-GLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNN- 161 (260)
T ss_dssp CSCCEECCCC-SCCSEEEEEECTTC--CEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGT-
T ss_pred CCCEEEEEEE-EEEECCCCCCCCCC--EEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCC-
T ss_conf 1200000010-00000000245532--0575033555321123222201223203667752054548998864102564-
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCC
Q ss_conf 98369999689870347850789878489999279999999958982999968998236998258999985438972899
Q 001776 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEG 654 (1015)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~ 654 (1015)
.+..++............... ....+++.++++.+++....+.|..++............. ......++++++|
T Consensus 162 ---~i~~~d~~~~~~~~~~~~~~~-~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~--~~~P~~i~~d~~g 235 (260)
T d1rwia_ 162 ---RVVKLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--LNTPLAVAVDSDR 235 (260)
T ss_dssp ---EEEEECTTTCCEEECCCSSCC-SEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS--CCCEEEEEECTTC
T ss_pred ---CCCCCCCCCCEEEEEECCCCC-CCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEEEECCCC--CCCEEEEEEECCC
T ss_conf ---332223431001222101147-8763123100013432148998999969997699970699--8981799990899
Q ss_pred CEEEEEECCCCEEEEECCCC
Q ss_conf 99999967995999983687
Q 001776 655 ILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 655 ~~l~s~~~dg~i~iw~~~~~ 674 (1015)
.++++-..++.|+.++....
T Consensus 236 ~l~vad~~~~rI~~i~~~~~ 255 (260)
T d1rwia_ 236 TVYVADRGNDRVVKLTSLEH 255 (260)
T ss_dssp CEEEEEGGGTEEEEECCCGG
T ss_pred CEEEEECCCCEEEEEECCCC
T ss_conf 99999799998999959998
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.98 E-value=1.1e-06 Score=57.67 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=33.1
Q ss_pred EEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEE-EEEECCCCEEEEEC
Q ss_conf 489999279999999958982999968998236998258999985438972899999-99967995999983
Q 001776 601 VGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILL-AVSTNDNGIKILAN 671 (1015)
Q Consensus 601 i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l-~s~~~dg~i~iw~~ 671 (1015)
...+++..+|+..++....+.|.+|+...+..+..+... ....++++|.++++.| ++.+.++.|..+++
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECC--CCCEEEEEEECCCCEEEEEECCCCCEEEEEC
T ss_conf 102578347857999827999999969999799999799--9987899992898999999878991999978
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.92 E-value=1.8e-06 Score=56.20 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCC
Q ss_conf 9997389995899997498199998213628999717557767999927999
Q 001776 889 FLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLN 940 (1015)
Q Consensus 889 ~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~ 940 (1015)
.+++.. +|++.++....+.|.+|+.+.++.+..+......+++++|.||++
T Consensus 230 GiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~ 280 (314)
T d1pjxa_ 230 GMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp EEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred EEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCC
T ss_conf 257834-785799982799999996999979999979999878999928989
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.86 E-value=3e-06 Score=54.73 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=10.8
Q ss_pred EEEEECCCCCEEEEEECCEEEEEECCCC
Q ss_conf 5999856998999995880999985992
Q 001776 981 TRVQFHLDQTHLLAVHETQIAIYEAPKL 1008 (1015)
Q Consensus 981 ~~l~fs~dg~~l~~~~d~~i~vwd~~~g 1008 (1015)
..+++.+||.++++..++.|++|+....
T Consensus 247 ~~vav~~dG~l~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 247 FDVALMDDGSVVLASKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred EEEEEECCCCEEEEECCCEEEEEEEEEE
T ss_conf 3799908991999918996999872203
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=3.7e-06 Score=54.05 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=9.4
Q ss_pred EEEEEEECCCCEEEEEECCCCEEEEECC
Q ss_conf 6799992799999998189829999856
Q 001776 930 ITGLAFSNTLNVLVSSGADSQLCVWSTD 957 (1015)
Q Consensus 930 v~~l~~spdg~~l~s~s~dg~i~iWd~~ 957 (1015)
...+++.+||.+++ ++.+..|++|...
T Consensus 246 p~~vav~~dG~l~V-~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 246 CFDVALMDDGSVVL-ASKDYRLYIYRYV 272 (279)
T ss_dssp EEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred EEEEEEECCCCEEE-EECCCEEEEEEEE
T ss_conf 83799908991999-9189969998722
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.73 E-value=7.5e-06 Score=51.93 Aligned_cols=241 Identities=15% Similarity=0.123 Sum_probs=125.1
Q ss_pred CCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
Q ss_conf 99743788636898199999458719999759962376753378751678855422235668888799998239998999
Q 001776 356 GSAVKSMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGV 435 (1015)
Q Consensus 356 ~~~V~~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las 435 (1015)
...+..++|.++|+ +.++-...+.|..|+..+++.... ..........+++++||+++++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred CCCCEECEECCCCC-EEEEECCCCEEEEEECCCCEEEEE-------------------EECCCCCEEEEEECCCCCEEEE
T ss_conf 86747078999999-999977999999998999959999-------------------9489987038999999999999
Q ss_pred EECC----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 9879----869999811893011235882234765499994499935999993899199998689946799507889979
Q 001776 436 AYSK----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVY 511 (1015)
Q Consensus 436 ~~~d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 511 (1015)
...+ +.+...+..++.... ...-..-......+++.++|. +.++...... . ...+.+.
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~--------~-------~~~g~v~ 160 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYS--------T-------NPLGGVY 160 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBT--------T-------BCCEEEE
T ss_pred ECCCCCCCEEEEEECCCCCEEEE-ECCCCCCCCCCCCEEEEECCC--EEECCCCCCC--------C-------CCCCEEE
T ss_conf 56897311049987389963644-426777555875226773065--3200135400--------2-------5742157
Q ss_pred EEEECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC-EEE
Q ss_conf 9830136996499998279929999678998313314999963899997899999998517899836999968987-034
Q 001776 512 SICPHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG-AVK 590 (1015)
Q Consensus 512 ~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~-~~~ 590 (1015)
.+ ++++. .+... .......+.++|+++++.++++.. ....|+.|++... ...
T Consensus 161 ~~----~~dg~---------~~~~~-----------~~~~~~pnGia~s~dg~~lyvad~---~~~~I~~~d~~~~g~~~ 213 (319)
T d2dg1a1 161 YV----SPDFR---------TVTPI-----------IQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTI 213 (319)
T ss_dssp EE----CTTSC---------CEEEE-----------EEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSE
T ss_pred EE----ECCCC---------EEEEE-----------EECCCEEEEEEECCCCCEEEEECC---CCCCEEEEEECCCCCEE
T ss_conf 88----41663---------35788-----------612330100010122212787404---68914799976998362
Q ss_pred E----E--EECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCC----CCCCCCEEEECCCCCEEEEE
Q ss_conf 7----8--507898784899992799999999589829999689982369982589----99985438972899999999
Q 001776 591 R----T--YHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADG----GLQASPCIRFNKEGILLAVS 660 (1015)
Q Consensus 591 ~----~--~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~i~~s~~~~~l~s~ 660 (1015)
. . ...........+++..+|+..++....+.|.+++. .++.+..+.... +...+++++|.++...+++.
T Consensus 214 ~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 214 QPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCCCEEEEEEEECCCCEEEEE
T ss_conf 0246333312577641036417389999999848998999979-995988996887577867504667780799889998
Q ss_pred EC
Q ss_conf 67
Q 001776 661 TN 662 (1015)
Q Consensus 661 ~~ 662 (1015)
+.
T Consensus 293 ~~ 294 (319)
T d2dg1a1 293 SN 294 (319)
T ss_dssp EE
T ss_pred CC
T ss_conf 57
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.60 E-value=1.7e-05 Score=49.43 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=52.3
Q ss_pred EECCC--CCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEC-C
Q ss_conf 86368--98199999458719999759962376753378751678855422235668888799998239998999987-9
Q 001776 363 DFHPV--QQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYS-K 439 (1015)
Q Consensus 363 ~~sp~--g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~-d 439 (1015)
..||+ |++++.+ .+|.|.+.|+.+++... +..+.+.+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred CCCCCCCCCEEEEE--ECCCEEEEECCCCCEEE--------------------EECCCCCCCCEEECCCCCEEEEEEEEC
T ss_conf 25888799999999--09968999899998799--------------------766998526779878999899998628
Q ss_pred -----CEEEEEECCCCCEEEEEE---EEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf -----869999811893011235---88223476549999449993599999
Q 001776 440 -----HIVHLYTYHGGDELRNHL---EIEAHVGSVNDLAFSYPNKQLSVVTC 483 (1015)
Q Consensus 440 -----g~i~iwd~~~~~~~~~~~---~l~~h~~~v~~i~~s~~~~~~~l~s~ 483 (1015)
..|.+++..+++...... .............|+|+++ .++..
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~ 112 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIIST 112 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC--EEEEE
T ss_conf 987722899998259952886416887547644434310279887--79999
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.39 E-value=5.5e-05 Score=45.89 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.5
Q ss_pred CEEEEECCCC
Q ss_conf 2999985676
Q 001776 950 QLCVWSTDGW 959 (1015)
Q Consensus 950 ~i~iWd~~~~ 959 (1015)
.|+++|++++
T Consensus 254 ~l~~~d~~~g 263 (281)
T d1k32a2 254 SIYIFNPDTE 263 (281)
T ss_dssp EEEEECTTTC
T ss_pred EEEEEECCCC
T ss_conf 9999989999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.38 E-value=6e-05 Score=45.62 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=9.5
Q ss_pred EEEEECCCCEEEEEECCCCEEEEECCC
Q ss_conf 999927999999995898299996899
Q 001776 603 VVQFDTTKNRFLAAGDEFMIKFWDMDN 629 (1015)
Q Consensus 603 ~i~~~~~~~~l~~~~~dg~i~iwd~~~ 629 (1015)
.++|.++++..++-...+.|+.|+...
T Consensus 44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g 70 (319)
T d2dg1a1 44 GLNFDRQGQLFLLDVFEGNIFKINPET 70 (319)
T ss_dssp EEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ECEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 078999999999977999999998999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.95 E-value=0.00042 Score=39.71 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=98.0
Q ss_pred EEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 78863689819999945871999975996237675337875167885542223566888879999823999899998798
Q 001776 361 SMDFHPVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKH 440 (1015)
Q Consensus 361 ~i~~sp~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg 440 (1015)
+..|++....+..+--..+.|.-||..+++.... .....+.++++.++|.++++ +.+|
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------~~~~~~~~i~~~~dg~l~va-~~~g 79 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIA-SDDG 79 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEE-ETTE
T ss_pred CCEEECCCCEEEEEECCCCEEEEEECCCCEEEEE---------------------ECCCCCEEEEEECCCCEEEE-EECC
T ss_conf 8759899999999987899999998998959999---------------------89998179899659988999-7376
Q ss_pred EEEEEECCCCCEEEEEEEEEC--CCCCEEEEEEECCCCCEEEEEEECC----CEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 699998118930112358822--3476549999449993599999389----9199998689946799507889979983
Q 001776 441 IVHLYTYHGGDELRNHLEIEA--HVGSVNDLAFSYPNKQLSVVTCGED----RVIKVWDAVTGTKQYIFEGHESPVYSIC 514 (1015)
Q Consensus 441 ~i~iwd~~~~~~~~~~~~l~~--h~~~v~~i~~s~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~h~~~v~~i~ 514 (1015)
+.++|..+++... +..... ....++.+.+.++|. +.++...+ +.-.+|.+..++.......
T Consensus 80 -l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--------- 146 (295)
T d2ghsa1 80 -LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--------- 146 (295)
T ss_dssp -EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE---------
T ss_pred -CEEEECCCCEEEE-EEEEECCCCCCCCEEEEECCCCC--EEEEECCCCCCCCCEEEEEECCCCEEEEEEC---------
T ss_conf -3895046451357-86640478766101357979999--9887426431333305766229968998650---------
Q ss_pred ECCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCC------E
Q ss_conf 0136996499998279929999678998313314999963899997899999998517899836999968987------0
Q 001776 515 PHHKENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEG------A 588 (1015)
Q Consensus 515 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~------~ 588 (1015)
-...+.++|+++++.++.... ....|+.+++... +
T Consensus 147 ------------------------------------~~~~Ng~~~s~d~~~l~~~dt---~~~~I~~~~~d~~~~~~~~~ 187 (295)
T d2ghsa1 147 ------------------------------------ISIPNSICFSPDGTTGYFVDT---KVNRLMRVPLDARTGLPTGK 187 (295)
T ss_dssp ------------------------------------ESSEEEEEECTTSCEEEEEET---TTCEEEEEEBCTTTCCBSSC
T ss_pred ------------------------------------CCCCCEEEECCCCCEEEEEEC---CCCEEEEEEECCCCCCCCCC
T ss_conf ------------------------------------687640246587766898515---66324676453555532453
Q ss_pred EE--EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEC-CCCCEEEEE
Q ss_conf 34--7850789878489999279999999958982999968998236998258999985438972-899999999
Q 001776 589 VK--RTYHGLGKRSVGVVQFDTTKNRFLAAGDEFMIKFWDMDNVNLLASIDADGGLQASPCIRFN-KEGILLAVS 660 (1015)
Q Consensus 589 ~~--~~~~~~~~~~i~~i~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s-~~~~~l~s~ 660 (1015)
.. ....+.. .....+++..+|+..++.-..+.|..|+. .++.+..+... ...+++++|- ++.+.|+..
T Consensus 188 ~~~~~~~~~~~-g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP--~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 188 AEVFIDSTGIK-GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP--GKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CEEEEECTTSS-SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS--CSBEEEEEEESTTSCEEEEE
T ss_pred EEEEECCCCCC-CCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCC--CCCEEEEEEECCCCCEEEEE
T ss_conf 57884167555-66632678699998953207884688569-99286686389--98527989828999999999
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.87 E-value=0.00057 Score=38.81 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=58.1
Q ss_pred CCCEEEECCCCCEEEEEC--CCEEEEEECCCCCE-----------EEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEE
Q ss_conf 803899735997999971--99199996778714-----------68937999991699973899958999974981999
Q 001776 845 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-----------MTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQI 911 (1015)
Q Consensus 845 ~v~~l~~s~dg~~la~~s--dg~i~iwd~~~~~~-----------~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~i 911 (1015)
....+.++|||+++++++ +.++.++|++.... +..-....-.-...+|.. .|....+-.-|..|.-
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~k 354 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK 354 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCC-CCEEEEEEECCCEEEE
T ss_conf 877338899997899938858957999822535665046884521796113576766203389-8429998612316999
Q ss_pred EECCCC----------EEEEEECCCCCCEEEEE------EECCCCEEEEEEC
Q ss_conf 982136----------28999717557767999------9279999999818
Q 001776 912 YNVRVD----------EVKTKLKGHQKRITGLA------FSNTLNVLVSSGA 947 (1015)
Q Consensus 912 wd~~~~----------~~~~~l~~h~~~v~~l~------~spdg~~l~s~s~ 947 (1015)
|++... ..+..+.-|-. +-.+. ..|||++|++...
T Consensus 355 w~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 355 WNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred EECCHHHHHHCCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 734405566446667731135433457-887745767867888878998034
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.83 E-value=0.00067 Score=38.31 Aligned_cols=82 Identities=13% Similarity=-0.007 Sum_probs=50.0
Q ss_pred CCEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCC-EEEEEEECCCC-
Q ss_conf 9919999677871468937999991699973899958999974981999982136289997175577-67999927999-
Q 001776 863 GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLN- 940 (1015)
Q Consensus 863 dg~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~- 940 (1015)
.|.+.-+|+.+++.+-+.............. .+.++++|+.|+.++-+|.++|+.+..+...... -.-+.+..||+
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCCEEEECCCCCCEEEECCCCCCCCCCEEEE--CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECCEEEEECCEE
T ss_conf 5617885367784642767899987560596--69979997789969999999986878998999965156489889999
Q ss_pred EEEEEE
Q ss_conf 999981
Q 001776 941 VLVSSG 946 (1015)
Q Consensus 941 ~l~s~s 946 (1015)
|+++..
T Consensus 521 Yi~v~~ 526 (571)
T d2ad6a1 521 YIGSMY 526 (571)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999990
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.71 E-value=0.001 Score=37.07 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEE
Q ss_conf 16999738999589999749819999821362899971755776799992
Q 001776 887 ATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRITGLAFS 936 (1015)
Q Consensus 887 i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v~~l~~s 936 (1015)
...+++.. +|.+.++.-..+.|..|+ ..++.+..+......+++++|-
T Consensus 201 pdG~~vD~-~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FG 248 (295)
T d2ghsa1 201 MDGSVCDA-EGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFI 248 (295)
T ss_dssp EEEEEECT-TSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEE
T ss_pred CCCEEECC-CCCEEEEEECCCCEEEEC-CCCCEEEEECCCCCCEEEEEEE
T ss_conf 63267869-999895320788468856-9992866863899852798982
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.65 E-value=0.0012 Score=36.53 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=49.4
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCC-EEEEEEECCCC-E
Q ss_conf 919999677871468937999991699973899958999974981999982136289997175577-67999927999-9
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKR-ITGLAFSNTLN-V 941 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~-v~~l~~spdg~-~ 941 (1015)
|.+.-||..+++.+-.... ..+...-.++. .+.+++.|+.||.++-+|.++|+.+..+....+. -.-+.+..||+ |
T Consensus 453 G~l~A~D~~TG~~~W~~~~-~~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY 530 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME-RFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE-SSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CEEEEEECCCCCEECCCCC-CCCCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 5389980788856233278-88874414686-699799978999599999999848369989999540776899899999
Q ss_pred EEEEE
Q ss_conf 99981
Q 001776 942 LVSSG 946 (1015)
Q Consensus 942 l~s~s 946 (1015)
++...
T Consensus 531 vav~~ 535 (596)
T d1w6sa_ 531 VAIYY 535 (596)
T ss_dssp EEEEE
T ss_pred EEEEE
T ss_conf 99993
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.62 E-value=0.0014 Score=36.18 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=48.9
Q ss_pred CEEEEEECCCCCEEEEECCCCCCE-EEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE-EEEEEECCCC-
Q ss_conf 919999677871468937999991-6999738999589999749819999821362899971755776-7999927999-
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAA-TFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN- 940 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i-~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~- 940 (1015)
|.+.-||+.+++.+-......... ..++. .+.++++|+.||.++.+|.++|+.+..+....+.. .-+.+..||+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQ 533 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQ 533 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCEEEE---CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEE
T ss_conf 617875787786670516889887760798---69989997799919999999886857998989945167799989999
Q ss_pred EEEEEE
Q ss_conf 999981
Q 001776 941 VLVSSG 946 (1015)
Q Consensus 941 ~l~s~s 946 (1015)
|++..+
T Consensus 534 Yv~v~~ 539 (573)
T d1kb0a2 534 YVSVAV 539 (573)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999993
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.61 E-value=0.0014 Score=36.11 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=10.1
Q ss_pred EEECCCCCEEEEEECC-CEEEEEECCC
Q ss_conf 9982399989999879-8699998118
Q 001776 424 VMWSPDGTLFGVAYSK-HIVHLYTYHG 449 (1015)
Q Consensus 424 i~~spdg~~las~~~d-g~i~iwd~~~ 449 (1015)
.++.+|++.++.|+.+ ..+.+||..+
T Consensus 81 ~~~~~~g~i~v~Gg~~~~~~~~yd~~~ 107 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDAKKTSLYDSSS 107 (387)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred EEEECCCCEEEEECCCCCCEEEECCCC
T ss_conf 999468868986368886216756755
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.52 E-value=0.0018 Score=35.35 Aligned_cols=84 Identities=10% Similarity=0.090 Sum_probs=49.5
Q ss_pred CEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCE-EEEEEECCCC-E
Q ss_conf 9199996778714689379999916999738999589999749819999821362899971755776-7999927999-9
Q 001776 864 GKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMEDSSIQIYNVRVDEVKTKLKGHQKRI-TGLAFSNTLN-V 941 (1015)
Q Consensus 864 g~i~iwd~~~~~~~~~l~~~~~~i~~i~~sp~d~~~la~~~~dg~i~iwd~~~~~~~~~l~~h~~~v-~~l~~spdg~-~ 941 (1015)
|.+.-||+.+++.+-...... +...-.++- .+.+++.|+.||.++-+|.++|+++..+....... .-+.+..+|+ |
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCEEEEECCCCEEEEECCCCC-CCCCCEEEE-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCEEE
T ss_conf 646887077883731025788-887740598-799899977898199999999858279989999551677999899999
Q ss_pred EEEEECCC
Q ss_conf 99981898
Q 001776 942 LVSSGADS 949 (1015)
Q Consensus 942 l~s~s~dg 949 (1015)
++..+..|
T Consensus 516 v~v~aG~g 523 (560)
T d1kv9a2 516 VAIMAGWG 523 (560)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
T ss_conf 99991778
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.41 E-value=0.0025 Score=34.39 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=55.5
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 81999982136289997175577679999279999999818982999985676510115887259986566773599985
Q 001776 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 986 (1015)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 986 (1015)
|.+.-||+.+++.+-..+.. .+...=..+-.+.++++++.|+.++.+|.++|+..-. +.+..+... .+ +.|.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~--~~~~~~~~~--~P---~ty~ 528 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE--APTGTGVVA--AP---STYM 528 (573)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCS--CC---EEEE
T ss_pred CCEEEECCCCCCEEEEECCC-CCCCCCEEEECCCEEEEECCCCEEEEEECCCCCEEEE--EECCCCCCC--CC---EEEE
T ss_conf 61787578778667051688-9887760798699899977999199999998868579--989899451--67---7999
Q ss_pred CCCC-EEEEEEC-----------------CEEEEEECCCCE
Q ss_conf 6998-9999958-----------------809999859922
Q 001776 987 LDQT-HLLAVHE-----------------TQIAIYEAPKLE 1009 (1015)
Q Consensus 987 ~dg~-~l~~~~d-----------------~~i~vwd~~~g~ 1009 (1015)
.||+ |+++... +.|.+|.+....
T Consensus 529 ~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~ 569 (573)
T d1kb0a2 529 VDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA 569 (573)
T ss_dssp ETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred ECCEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC
T ss_conf 89999999993787532334555557899889999809967
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.25 E-value=0.0037 Score=33.13 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=18.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEE
Q ss_conf 999994587199997599623767
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAV 394 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~~~~~~~~~ 394 (1015)
.+.+|+..|.|+|+-+.+++.+..
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ 38 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMR 38 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEE
T ss_pred EEEECCCCCEEEEEECCCCCEEEE
T ss_conf 994078663389995488635877
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.84 E-value=0.0085 Score=30.66 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=9.6
Q ss_pred EEEEECCCCCEEEEEEECC-CEEEEEECCC
Q ss_conf 9999449993599999389-9199998689
Q 001776 468 DLAFSYPNKQLSVVTCGED-RVIKVWDAVT 496 (1015)
Q Consensus 468 ~i~~s~~~~~~~l~s~s~d-g~i~iwd~~~ 496 (1015)
..++.++++ +++.|+.+ ..+.+||..+
T Consensus 80 ~~~~~~~g~--i~v~Gg~~~~~~~~yd~~~ 107 (387)
T d1k3ia3 80 GISMDGNGQ--IVVTGGNDAKKTSLYDSSS 107 (387)
T ss_dssp EEEECTTSC--EEEECSSSTTCEEEEEGGG
T ss_pred EEEEECCCC--EEEEECCCCCCEEEECCCC
T ss_conf 899946886--8986368886216756755
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.80 E-value=0.009 Score=30.45 Aligned_cols=163 Identities=12% Similarity=0.023 Sum_probs=54.3
Q ss_pred CEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCE
Q ss_conf 65499994499935999993899199998689946799507889979983013699649999827992999967899831
Q 001776 465 SVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWLYDNLGSR 544 (1015)
Q Consensus 465 ~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 544 (1015)
.+..++|....+. .+.+-..++.|+..++..+.....+......+.++++.+..+ .+.++-...+.|.+.+++.....
T Consensus 37 ~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~-~lY~~d~~~~~I~~~~~dg~~~~ 114 (263)
T d1npea_ 37 VIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGR-TIFWTDSQLDRIEVAKMDGTQRR 114 (263)
T ss_dssp EEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCE
T ss_pred CEEEEEEEECCCE-EEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCC-EEEEECCCCCEEEEEECCCCEEE
T ss_conf 5799999858999-999989999199997665872898870126420799963688-68884267897998805881677
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCCEE
Q ss_conf 3314999963899997899999998517899836999968987034785078987848999927999999995-898299
Q 001776 545 VDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIK 623 (1015)
Q Consensus 545 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~ 623 (1015)
............+++.|...+++...... ....|..-++......... ...-.....+++.+.++.++.+. ..+.|.
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~~~~~i~-~~~~~~P~glaiD~~~~~lYw~d~~~~~I~ 192 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTNRRILA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCCCEEEE-CTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEECCCCCCCCEEEEECCCCCEEEEECCC-CCCEEEEECCCCCCCEEEE-EECCCCCCEEEEEECCCEEEEEECCCCEEE
T ss_conf 77125666872799925669279953489-9768999667899723655-303555530799504758999928999999
Q ss_pred EEECCCCC
Q ss_conf 99689982
Q 001776 624 FWDMDNVN 631 (1015)
Q Consensus 624 iwd~~~~~ 631 (1015)
..++....
T Consensus 193 ~~~~~g~~ 200 (263)
T d1npea_ 193 CLNPAQPG 200 (263)
T ss_dssp EEETTEEE
T ss_pred EEECCCCC
T ss_conf 99999997
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.67 E-value=0.011 Score=29.80 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=61.4
Q ss_pred EEEEEECCCEEEEEEC-CCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC----CCEEEEEECCCEEEEE
Q ss_conf 9999945871999975-9962376753378751678855422235668888799998239----9989999879869999
Q 001776 371 LLVVGTNMGDVMLWEV-GSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPD----GTLFGVAYSKHIVHLY 445 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spd----g~~las~~~dg~i~iw 445 (1015)
+.++.+.++.+...|. .+|+.+- ........... ........-+.+++.++ ..+++.++.|+.+.-.
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W-------~~~~~~~~~~~-~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Al 136 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILW-------QDKPKQNPAAR-AVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAAL 136 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEE-------EECCCCCGGGG-GGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEE
T ss_pred EEEEECCCCCEEEEECCCCCCEEE-------EECCCCCCCCC-CCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEE
T ss_conf 999517899689995799887788-------70387886434-3213566665169832799886299998079876854
Q ss_pred ECCCCCEEEEEEEEECCCC-CEEEEEEECCCCCEEEEEEEC------CCEEEEEECCCCCEEEEEEC
Q ss_conf 8118930112358822347-654999944999359999938------99199998689946799507
Q 001776 446 TYHGGDELRNHLEIEAHVG-SVNDLAFSYPNKQLSVVTCGE------DRVIKVWDAVTGTKQYIFEG 505 (1015)
Q Consensus 446 d~~~~~~~~~~~~l~~h~~-~v~~i~~s~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~ 505 (1015)
|.++|+.+.....-..+.. .++.--.--++. ++.+.. .|.|+-+|+.+|+.+.++..
T Consensus 137 da~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 137 NAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 36568410231014655564224588177775---89930234443357328988788857788653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.67 E-value=0.011 Score=29.80 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=64.0
Q ss_pred EEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 99999458719999759962376753378751678855422235668888799998239998999987986999981189
Q 001776 371 LLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHGG 450 (1015)
Q Consensus 371 lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~~ 450 (1015)
.+++++.++.|.-.|..+|+.+-....+ ....... ...... ..+++ .+..++.++.++.+.-.|..+|
T Consensus 70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~-----~~~~~~~--~~~~~~---rg~a~--~~~~i~~~t~~~~l~alda~tG 137 (582)
T d1flga_ 70 VIYVTASYSRLFALDAKTGKRLWTYNHR-----LPDDIRP--CCDVVN---RGAAI--YGDKVFFGTLDASVVALNKNTG 137 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECC-----CCTTCCC--SSCSCC---CCCEE--ETTEEEEEETTTEEEEEESSSC
T ss_pred EEEEECCCCEEEEEECCCCCEEEEECCC-----CCCCCCC--CCCCCC---CCCEE--ECCCEEEECCCCEEEEECCCCC
T ss_conf 9999689995999968999868887688-----9876553--334446---77458--6781588648874998116666
Q ss_pred CEEEEEEEEECCCCC--E--EEEEEEC--CCCCEEEEEE------ECCCEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 301123588223476--5--4999944--9993599999------389919999868994679950788997
Q 001776 451 DELRNHLEIEAHVGS--V--NDLAFSY--PNKQLSVVTC------GEDRVIKVWDAVTGTKQYIFEGHESPV 510 (1015)
Q Consensus 451 ~~~~~~~~l~~h~~~--v--~~i~~s~--~~~~~~l~s~------s~dg~i~iwd~~~~~~~~~~~~h~~~v 510 (1015)
+.+.... +..+... . .-..+.+ .+.. .++.+ +..+.+.-+|..+|+.+.++.......
T Consensus 138 ~~~W~~~-~~~~~~~~~~~~~p~~~~~~~~~~~-~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 207 (582)
T d1flga_ 138 KVVWKKK-FADHGAGYTMTGAPTIVKDGKTGKV-LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHM 207 (582)
T ss_dssp CEEEEEE-CSCGGGTCBCCSCCEEEECTTTCCE-EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCE
T ss_pred CEEEEEC-CCCCCCCCEEECCCEEECCCCEEEE-EEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC
T ss_conf 3021110-2477766124038667048847579-99907665434654634872388886789871217865
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.66 E-value=0.011 Score=29.75 Aligned_cols=122 Identities=7% Similarity=0.037 Sum_probs=61.2
Q ss_pred EEEEE-CCCEEEEEECC-CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 99994-58719999759-96237675337875167885542223566888879999823999899998798699998118
Q 001776 372 LVVGT-NMGDVMLWEVG-SRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWSPDGTLFGVAYSKHIVHLYTYHG 449 (1015)
Q Consensus 372 la~g~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~spdg~~las~~~dg~i~iwd~~~ 449 (1015)
+++++ .++.|...|.. +|+.+ |............ .......-+.+++. +..++.++.|+.+.-.|.++
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~-------W~~~~~~~~~~~~-~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~t 134 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIV-------WQHKPKQDASTKA-VMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKT 134 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEE-------EEECCCCCGGGGG-GCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTT
T ss_pred EEEECCCCCEEEEEECCCCCCEE-------EEECCCCCCCCCC-CCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHH
T ss_conf 99942879959999489998668-------8835888865442-00247688862650--88699991797578210021
Q ss_pred CCEEEEEEEEECCC-CCEEEEEEECCCCCEEEEEEE------CCCEEEEEECCCCCEEEEEECC
Q ss_conf 93011235882234-765499994499935999993------8991999986899467995078
Q 001776 450 GDELRNHLEIEAHV-GSVNDLAFSYPNKQLSVVTCG------EDRVIKVWDAVTGTKQYIFEGH 506 (1015)
Q Consensus 450 ~~~~~~~~~l~~h~-~~v~~i~~s~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~h 506 (1015)
|+..........+. ..++.--.-.++. ++.+. .+|.|+-+|+.+|+.+.++...
T Consensus 135 G~~~w~~~~~~~~~~~~~t~~p~v~~~~---vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 195 (571)
T d2ad6a1 135 GKINWEVEVCDPKVGSTLTQAPFVAKDT---VLMGCSGAELGVRGAVNAFDLKTGELKWRAFAT 195 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTE---EEEECBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred HHHHCCCCCCCCCCCCCEEECCEEECCE---EEEEECCCCCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 1220234445544324145367575885---888502344234674799988898588997046
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.014 Score=29.20 Aligned_cols=98 Identities=11% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEE-EEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCC
Q ss_conf 8879999823999899998-798699998118930112-35882234765499994499935999993899199998689
Q 001776 419 ASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRN-HLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVT 496 (1015)
Q Consensus 419 ~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~-~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~ 496 (1015)
..+..++|.+..+.|.... .++.|.-.++........ ...+......+..+++.+.+.. +..+-...+.|.+.++..
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred CCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCE-EEEEECCCCEEEEEECCC
T ss_conf 8559999980899999999979979999935788876148998489998546898642652-899954899998576489
Q ss_pred CCEEEEEECCCCCEEEEEECC
Q ss_conf 946799507889979983013
Q 001776 497 GTKQYIFEGHESPVYSICPHH 517 (1015)
Q Consensus 497 ~~~~~~~~~h~~~v~~i~~~~ 517 (1015)
......+.........+++++
T Consensus 109 ~~~~~~~~~~~~~P~~l~vd~ 129 (266)
T d1ijqa1 109 VKRKTLFRENGSKPRAIVVDP 129 (266)
T ss_dssp SSEEEEEECTTCCEEEEEEET
T ss_pred CEEEEEECCCCCCCCEEEEEC
T ss_conf 537888727998833699980
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.018 Score=28.39 Aligned_cols=223 Identities=8% Similarity=0.007 Sum_probs=96.1
Q ss_pred EEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCC----EEEEEECCCCCEEEEEECC
Q ss_conf 999981189301123588223476549999449993599999389919999868994----6799507889979983013
Q 001776 442 VHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGT----KQYIFEGHESPVYSICPHH 517 (1015)
Q Consensus 442 i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~i~~~~ 517 (1015)
|+..++.+.... .+......+..++|.+..+. +..+-..++.|...++.... ....+......+..+++.+
T Consensus 12 I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~ 86 (266)
T d1ijqa1 12 VRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (266)
T ss_dssp EEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred EEEEECCCCCCE----EEECCCCCEEEEEEEECCCE-EEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 899989998526----64179985599999808999-9999997997999993578887614899848999854689864
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 69964999982799299996789983133149999638999978999999985178998369999689870347850789
Q 001776 518 KENIQFIFSTATDGKIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKEGESYLVEWNESEGAVKRTYHGLG 597 (1015)
Q Consensus 518 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~~~~~i~iwd~~~~~~~~~~~~~~ 597 (1015)
... ++.++-...+.|.+.+++.................+++.|...+++..... ....|...++.......... ..
T Consensus 87 ~~~-~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs~~~~l~~-~~ 162 (266)
T d1ijqa1 87 IHS-NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDIYSLVT-EN 162 (266)
T ss_dssp TTT-EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCCEEEEEC-SS
T ss_pred CCC-EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCC--CCCCEEEECCCCCCEECCCC-CC
T ss_conf 265-289995489999857648953788872799883369998003948871269--97302686368883441200-45
Q ss_pred CCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCC
Q ss_conf 87848999927999999995-898299996899823699825899998543897289999999967995999983687
Q 001776 598 KRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASIDADGGLQASPCIRFNKEGILLAVSTNDNGIKILANADG 674 (1015)
Q Consensus 598 ~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~i~~s~~~~~l~s~~~dg~i~iw~~~~~ 674 (1015)
-.....+++.+.++.++.+. ..+.|...++....................+++. ++.+..+-..++.|...+..++
T Consensus 163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEE-CCEEEEEECCCCEEEEEECCCC
T ss_conf 3201699861335699995289679999989999779999389855664799998-9999999899996999999899
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.26 E-value=0.019 Score=28.13 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=17.5
Q ss_pred EEEECCCCCEEEEEEECCC----EEEEEECCCCCEEE
Q ss_conf 7886368981999994587----19999759962376
Q 001776 361 SMDFHPVQQILLVVGTNMG----DVMLWEVGSRERIA 393 (1015)
Q Consensus 361 ~i~~sp~g~~lla~g~~dg----~i~iwd~~~~~~~~ 393 (1015)
...+||++++++++-+.+| .+++.|+.+++.+.
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~ 165 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP 165 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE
T ss_pred CEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECC
T ss_conf 2585378987999955666721046774167640314
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.06 E-value=0.024 Score=27.46 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=17.0
Q ss_pred CCEEEECCCCCEEEEEC-CCEEEEEECCCCCEEEEECCCCCCE
Q ss_conf 03899735997999971-9919999677871468937999991
Q 001776 846 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMTTFMPPPPAA 887 (1015)
Q Consensus 846 v~~l~~s~dg~~la~~s-dg~i~iwd~~~~~~~~~l~~~~~~i 887 (1015)
..++.+|+.-..+...+ .|.+.+||++++.++..-+-....|
T Consensus 258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i 300 (327)
T d1utca2 258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 300 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 7799964337999999667589999756662899940478844
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.91 E-value=0.028 Score=27.03 Aligned_cols=12 Identities=0% Similarity=0.213 Sum_probs=4.7
Q ss_pred EEEEEECCCCCE
Q ss_conf 699998118930
Q 001776 441 IVHLYTYHGGDE 452 (1015)
Q Consensus 441 ~i~iwd~~~~~~ 452 (1015)
.+.++|+++.+.
T Consensus 84 ~LQiFnletK~k 95 (327)
T d1utca2 84 TLQIFNIEMKSK 95 (327)
T ss_dssp EEEEEETTTTEE
T ss_pred EEEEEEHHHHHH
T ss_conf 689984468221
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.04 Score=25.92 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCC
Q ss_conf 8879999823999899998-798699998118930112358822347654999944999359999938991999986899
Q 001776 419 ASVNRVMWSPDGTLFGVAY-SKHIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQLSVVTCGEDRVIKVWDAVTG 497 (1015)
Q Consensus 419 ~~V~~i~~spdg~~las~~-~dg~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~ 497 (1015)
..+..++|.+..+.+.... .++.|...++.++.... .+......+..+++..-+.. +..+-...+.|.+.++...
T Consensus 36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~ 111 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (263)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEE---EEEECCCCCCEEEEECCCCE-EEEECCCCCEEEEEECCCC
T ss_conf 7579999985899999998999919999766587289---88701264207999636886-8884267897998805881
Q ss_pred CEEEEEECCCCCEEEEEECCCCCCCEEEEEE-CCC--EEEEEECCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCC
Q ss_conf 4679950788997998301369964999982-799--2999967899831331499996389999789999999851789
Q 001776 498 TKQYIFEGHESPVYSICPHHKENIQFIFSTA-TDG--KIKAWLYDNLGSRVDYDAPGHSSTMMAYSADGARLFSCGTNKE 574 (1015)
Q Consensus 498 ~~~~~~~~h~~~v~~i~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~ 574 (1015)
.....+.........++++|.. .+++... ..+ .|..-+++...........-....++++.+.++.|+.+..
T Consensus 112 ~~~~l~~~~l~~p~~l~vdp~~--g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~--- 186 (263)
T d1npea_ 112 QRRVLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (263)
T ss_dssp SCEEEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred EEEEEECCCCCCCCEEEEECCC--CCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEEC---
T ss_conf 6777712566687279992566--92799534899768999667899723655303555530799504758999928---
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCCEEEEE
Q ss_conf 9836999968987034785078987848999927999999995-8982999968998236998
Q 001776 575 GESYLVEWNESEGAVKRTYHGLGKRSVGVVQFDTTKNRFLAAG-DEFMIKFWDMDNVNLLASI 636 (1015)
Q Consensus 575 ~~~~i~iwd~~~~~~~~~~~~~~~~~i~~i~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 636 (1015)
+.+.|...+.........+.+.. ....+++. +..++... ..+.|...|..+++.+..+
T Consensus 187 ~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCC--CCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEE
T ss_conf 99999999999997699988999--86899999--9999999999997999989899510698
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.20 E-value=0.049 Score=25.32 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=35.7
Q ss_pred CCCCEEEEEECCCCCEEEEEEC-C----CEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCC
Q ss_conf 8888799998239998999987-9----86999981189301123588223476549999449993
Q 001776 417 YTASVNRVMWSPDGTLFGVAYS-K----HIVHLYTYHGGDELRNHLEIEAHVGSVNDLAFSYPNKQ 477 (1015)
Q Consensus 417 h~~~V~~i~~spdg~~las~~~-d----g~i~iwd~~~~~~~~~~~~l~~h~~~v~~i~~s~~~~~ 477 (1015)
+.-.+...++|||++++|.+-. . ..+++.|+.+++.+.. .+. ......++|++|++.
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~ 184 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG 184 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE
T ss_pred CCCEECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCC--CCC--CCCCCCEEECCCCCE
T ss_conf 44133425853789879999556667210467741676403144--222--432364178579989
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.51 E-value=0.073 Score=24.12 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=45.8
Q ss_pred CEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 81999982136289997175577679999279999999818982999985676510115887259986566773599985
Q 001776 907 SSIQIYNVRVDEVKTKLKGHQKRITGLAFSNTLNVLVSSGADSQLCVWSTDGWEKQASKFLTIPNGRTASALADTRVQFH 986 (1015)
Q Consensus 907 g~i~iwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~s~s~dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 986 (1015)
|.+.-||+.+++.+-.... ..+...-.++-.+.+++.++.||.++-+|.++|+..-. ..+..+... . -+.|.
T Consensus 438 G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~--~~l~~~~~~--~---P~ty~ 509 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ--FEAQSGIVA--A---PMTFE 509 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE--EECSSCCCS--C---CEEEE
T ss_pred CCEEEEECCCCEEEEECCC-CCCCCCCEEEECCCEEEEECCCCCEEEEECCCCCEEEE--EECCCCCCC--C---CEEEE
T ss_conf 6468870778837310257-88887740598799899977898199999999858279--989999551--6---77999
Q ss_pred CCCC-EEEE
Q ss_conf 6998-9999
Q 001776 987 LDQT-HLLA 994 (1015)
Q Consensus 987 ~dg~-~l~~ 994 (1015)
.||+ |+++
T Consensus 510 ~dGkqyv~v 518 (560)
T d1kv9a2 510 LAGRQYVAI 518 (560)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
T ss_conf 899999999
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.048 Score=25.41 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC--HHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 489999999976332969999999975098842--8989988635468999998617
Q 001776 5 SRELVFLILQFLDEEKFKETVHKLEQDSGFFFN--MRYFEDMVTNGEWDEVEKYLSG 59 (1015)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~~ 59 (1015)
++|+-+=|++||..+||.+++.+|.+|..+.++ ...-....|+-.|..++.+-.+
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK 63 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK 63 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999999999999988829999999998778987046664037212589989999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.84 E-value=0.23 Score=20.67 Aligned_cols=70 Identities=14% Similarity=0.018 Sum_probs=39.7
Q ss_pred CEEEEEECCCEEEEEECCCCCEEEEEEEEE-----CCCCCE-EEEEEECCCCCEEEEEEECCCEEEEEECCCCCEEEEEE
Q ss_conf 989999879869999811893011235882-----234765-49999449993599999389919999868994679950
Q 001776 431 TLFGVAYSKHIVHLYTYHGGDELRNHLEIE-----AHVGSV-NDLAFSYPNKQLSVVTCGEDRVIKVWDAVTGTKQYIFE 504 (1015)
Q Consensus 431 ~~las~~~dg~i~iwd~~~~~~~~~~~~l~-----~h~~~v-~~i~~s~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 504 (1015)
..|.+++.++.|.-.|..+|+.+..+..-. .....+ ..++.. +. .++.++.|+.+.-.|.++|+.+....
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~--~i~~~t~~~~l~alda~tG~~~W~~~ 144 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GD--KVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TT--EEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CC--CEEEECCCCEEEEECCCCCCEEEEEC
T ss_conf 999996899959999689998688876889876553334446774586--78--15886488749981166663021110
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.31 E-value=0.25 Score=20.37 Aligned_cols=146 Identities=13% Similarity=0.226 Sum_probs=62.2
Q ss_pred CCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEC------CCCCEEEEEEC-
Q ss_conf 68981999994587199997599623767533787516788554222356688887999982------39998999987-
Q 001776 366 PVQQILLVVGTNMGDVMLWEVGSRERIAVKSFKVWELGACSMPLQASLSSDYTASVNRVMWS------PDGTLFGVAYS- 438 (1015)
Q Consensus 366 p~g~~lla~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~i~~s------pdg~~las~~~- 438 (1015)
|+.. +++...+.+-+++||+. |+.+.. + ..+.++.+..- ....-+++++.
T Consensus 38 p~~S-lI~gTdK~~Gl~vYdL~-G~~l~~-------------------~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR 94 (353)
T d1h6la_ 38 PQNS-KLITTNKKSGLAVYSLE-GKMLHS-------------------Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNR 94 (353)
T ss_dssp GGGC-EEEEEETTSCCEEEETT-CCEEEE-------------------C--CSSCEEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred CCCC-EEEEECCCCCEEEECCC-CCEEEE-------------------C--CCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 6723-89997586887999189-968774-------------------0--36776732433664357750689999578
Q ss_pred C---CEEEEEECCCCC-EEEEEEE----EECCCCCEEEEEE--ECCCCCEEEEEEECCCEEEEEECC---CC----CEEE
Q ss_conf 9---869999811893-0112358----8223476549999--449993599999389919999868---99----4679
Q 001776 439 K---HIVHLYTYHGGD-ELRNHLE----IEAHVGSVNDLAF--SYPNKQLSVVTCGEDRVIKVWDAV---TG----TKQY 501 (1015)
Q Consensus 439 d---g~i~iwd~~~~~-~~~~~~~----l~~h~~~v~~i~~--s~~~~~~~l~s~s~dg~i~iwd~~---~~----~~~~ 501 (1015)
+ ..|.+|.+.... .+..... ...-...+..+++ ++....++++....+|.+..|.+. .+ +.++
T Consensus 95 ~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr 174 (353)
T d1h6la_ 95 SEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVR 174 (353)
T ss_dssp CTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEE
T ss_conf 67630599998447666311246655433456676569997742777807999975886089999974789725557630
Q ss_pred EEECCCCCEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf 950788997998301369964999982799299996
Q 001776 502 IFEGHESPVYSICPHHKENIQFIFSTATDGKIKAWL 537 (1015)
Q Consensus 502 ~~~~h~~~v~~i~~~~~~~~~~l~s~~~dg~i~iwd 537 (1015)
.+. ....+..|.+.... ..|+.+-++..+..++
T Consensus 175 ~f~-~~~q~EGCVvDde~--~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 175 AFK-MNSQTEGMAADDEY--GSLYIAEEDEAIWKFS 207 (353)
T ss_dssp EEE-CSSCEEEEEEETTT--TEEEEEETTTEEEEEE
T ss_pred CCC-CCCCCCEEEEECCC--CCEEEECCCCCEEEEE
T ss_conf 358-88862169981788--9499954755238888
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=0.71 Score=17.27 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 200478999999999999821599899999997412222469788999988534324324200024799
Q 001776 67 RYSMKIFFEIRKQKYLEALDKRDRAKAVEILVKDLKVFSAFNEDLFKEITQLLTLENFRDNEQLSKYGD 135 (1015)
Q Consensus 67 ~~~~~~~~~i~~q~~~Ell~~~~~~~A~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 135 (1015)
++.. ++|.++-+.|+||+..+....|..++.+--..+.....+++++|..+.......+++....+..
T Consensus 41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~ 108 (149)
T d2nxpa1 41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRT 108 (149)
T ss_dssp HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCG
T ss_pred HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 9998-8999999999999978987899999998222435889999999873799888732489999737
|