Citrus Sinensis ID: 001789

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010---

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNVNLT

cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHccccHHHHHHHHHHHHHHccccccccHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHccccc

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHEEccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccc

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTnfvsfqnhecyIRTASVVIEefghkdeygplfVTTFERFSQAASVRALNssyicdqepDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGyttsipegsfNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLpaeylkqgetetlpPVWLKALAGAASDYLEsmscnggnsnyghmqgkgGRVLKRIIREFADshrnvnlt

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNVNLT

*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGG**NYGHM*GKGGRVLKRIIREF**********

***DLQIKVAQAVHVLNHD******VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS*****KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWG*ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID***********ATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLL*******EGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQ**************LPPVWLKALAGAASDYLESMSCNGGNSNYGHM*GKGGRVLKRIIREFADSHRNVN**

**MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF*DDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCNGGNS********GGRVLKRIIREFADSHR*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1013	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.789	0.866	0.228	7e-33
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.752	0.825	0.229	9e-33
Q9USZ2		955	Uncharacterized protein C	yes	no	0.678	0.719	0.248	7e-23
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.692	0.728	0.213	5e-19
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.817	0.859	0.206	2e-18
O94829		963	Importin-13 OS=Homo sapie	no	no	0.817	0.859	0.206	4e-18
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.813	0.855	0.205	5e-18
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.816	0.858	0.206	3e-17
Q99189		972	mRNA transport regulator	yes	no	0.501	0.522	0.223	9e-16
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.812	0.859	0.215	1e-14

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  143 bits (360), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 209/914 (22%), Positives = 383/914 (41%), Gaps = 114/914 (12%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKM---LMKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK--------DEY 762
             A++  G+    LL Q L     N      H C++   S++++E+G +        D  
Sbjct: 667 RFAVRCVGKGSAALL-QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML 725

Query: 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822
             L + TF+   Q   ++           PD V+     A+ F++ S   +L +    + 
Sbjct: 726 QALCIPTFQLLEQQNGLQ---------NHPDTVDDLFRLATRFIQRSPVTLLRSQ---VV 773

Query: 823 VSFQKAAICCTAM-HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF---NAMAIQVI 878
           +   + AI  T + HR A  + M +L   +   +A       +  E  F     +  QV+
Sbjct: 774 IPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVA-------NDHEEDFELRKELIGQVM 826

Query: 879 SHSGEGLVSNVVYA 892
           S  G+ LVS +++ 
Sbjct: 827 SQLGQQLVSQLLHT 840

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1013
359488588		1015	PREDICTED: transportin-3-like [Vitis vin	0.996	0.994	0.804	0.0
255543441		1020	Transportin-3, putative [Ricinus communi	0.993	0.986	0.800	0.0
449501328		1029	PREDICTED: transportin-3-like [Cucumis s	0.995	0.979	0.770	0.0
224131372		1008	predicted protein [Populus trichocarpa]	0.984	0.989	0.777	0.0
356561051		1011	PREDICTED: transportin-3-like [Glycine m	0.996	0.998	0.749	0.0
449455816		1031	PREDICTED: LOW QUALITY PROTEIN: transpor	0.993	0.975	0.755	0.0
18391456		1005	exportin 1-like protein domain-containin	0.982	0.990	0.665	0.0
15215746		1005	At1g12930/F13K23_14 [Arabidopsis thalian	0.982	0.990	0.664	0.0
297849682		1007	hypothetical protein ARALYDRAFT_471447 [	0.982	0.988	0.664	0.0
8698739		974	Contains similarity to transportin-SR fr	0.951	0.989	0.642	0.0

>gi\|359488588\|ref\|XP_002276597.2\| PREDICTED: transportin-3-like [Vitis vinifera] gi\|296082227\|emb\|CBI21232.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1640 bits (4246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1017 (80%), Positives = 899/1017 (88%), Gaps = 8/1017 (0%)

Query: 3    MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
            M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1    MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59   DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
            DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61   DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119  ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
            I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121  IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179  GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
            GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181  GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239  AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
             HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239  GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299  KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
            KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299  KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359  SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
            SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359  SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418  MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
            MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419  MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478  FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
            FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479  FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538  ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
            ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539  ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598  ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
            IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599  ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658  TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
            TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659  TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718  GQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777
            GQHFVTLLP+VLDCLS NFV FQ+HECYIRTASVV+EEFGHK+EYGPLF++ FERF+ AA
Sbjct: 719  GQHFVTLLPEVLDCLSKNFVLFQSHECYIRTASVVLEEFGHKEEYGPLFISAFERFTYAA 778

Query: 778  SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837
            SV ALNSSYICDQEPDLVEAYTNF STFVR S KEVLAASG+LLEVSFQKAAICCTAMHR
Sbjct: 779  SVMALNSSYICDQEPDLVEAYTNFTSTFVRGSPKEVLAASGSLLEVSFQKAAICCTAMHR 838

Query: 838  GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVS 897
            GAALAAMSY+SCFLE  L SLL   T IPEGSF+A+AIQVISHSGEGLVSNVVYALLGVS
Sbjct: 839  GAALAAMSYMSCFLEVGLISLLESMTCIPEGSFSAVAIQVISHSGEGLVSNVVYALLGVS 898

Query: 898  AMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETL 957
            AMSRVHK ATILQQLAA+CS+SE T+ KAIL WESL  WL  AVQ LPAEYLKQGE E L
Sbjct: 899  AMSRVHKSATILQQLAAVCSLSEGTTCKAILCWESLHEWLRLAVQALPAEYLKQGEAEVL 958

Query: 958  PPVWLKALAGAASDYLESMSCNGGNSNYGHMQGKGGRVLKRIIREFADSHRNV-NLT 1013
             PVWLKAL GAA DYLES  C+GG  N GHMQGKGG++LKR++REFADSHRNV NLT
Sbjct: 959  VPVWLKALGGAALDYLESKRCDGGKDNRGHMQGKGGQILKRLVREFADSHRNVPNLT 1015

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543441\|ref\|XP_002512783.1\| Transportin-3, putative [Ricinus communis] gi\|223547794\|gb\|EEF49286.1\| Transportin-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449501328\|ref\|XP_004161339.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224131372\|ref\|XP_002321068.1\| predicted protein [Populus trichocarpa] gi\|222861841\|gb\|EEE99383.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561051\|ref\|XP_003548799.1\| PREDICTED: transportin-3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455816\|ref\|XP_004145646.1\| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18391456\|ref\|NP_563920.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi\|332190829\|gb\|AEE28950.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|15215746\|gb\|AAK91418.1\| At1g12930/F13K23_14 [Arabidopsis thaliana] gi\|27363440\|gb\|AAO11639.1\| At1g12930/F13K23_14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849682\|ref\|XP_002892722.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi\|297338564\|gb\|EFH68981.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|8698739\|gb\|AAF78497.1\|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb\|AF145029. ESTs gb\|T46556, gb\|AI993189, gb\|T45501, gb\|AA394463 come from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1013
TAIR\|locus:2010381		1005	AT1G12930 "AT1G12930" [Arabido	0.982	0.990	0.659	0.0
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.389	0.428	0.257	5.9e-34
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.511	0.540	0.255	1.2e-32
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.777	0.823	0.231	1.6e-32
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.384	0.422	0.256	1e-30
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.389	0.427	0.257	1.3e-30
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.389	0.427	0.257	2.8e-30
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.389	0.427	0.257	7.4e-30
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.389	0.425	0.257	1.8e-29
UNIPROTKB\|A7YWD2		963	IPO13 "Importin-13" [Bos tauru	0.709	0.746	0.213	3e-29

TAIR\|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3374 (1192.8 bits), Expect = 0., P = 0.
 Identities = 666/1010 (65%), Positives = 811/1010 (80%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG+HF
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSGEHF 708

Query:   722 VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781
             + LLP VLDCLS NF+SFQ+ ECYIRTA V+ EEF HK+EYG LF+TTFERF+QA+S+  
Sbjct:   709 MLLLPSVLDCLSRNFLSFQSQECYIRTACVIAEEFCHKEEYGSLFITTFERFTQASSLMG 768

Query:   782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841
             +NSSYICDQEPDLVEAY NFAS  +R+  KE+L  SG LLE+SF KAAICCTAMHRGAAL
Sbjct:   769 INSSYICDQEPDLVEAYVNFASALIRSCHKELLGTSGTLLEISFHKAAICCTAMHRGAAL 828

Query:   842 AAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901
             AAMSYLS FLE  L+S++    SI +GSF+ +++QV+SH GEGL+SN+VYALLGV+AMSR
Sbjct:   829 AAMSYLSGFLEVSLSSMIETVNSISDGSFSVVSVQVVSHCGEGLLSNLVYALLGVAAMSR 888

Query:   902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQVLPAEYLKQGETETLPPVW 961
             VHKC+TILQQLAAICS+ ERTS K +L W+SLQGWL+SAV  LP+EYLKQGE E++   W
Sbjct:   889 VHKCSTILQQLAAICSLCERTSWKGMLCWKSLQGWLNSAVWALPSEYLKQGEAESIVREW 948

Query:   962 LKALAGAASDYLESMSCNGG--NSNYGHMQGKGGRVLKRIIREFADSHRN 1009
              +AL GA  DYLE+ SCN G  NS+ GHMQGK GR LKR++R+FADSHRN
Sbjct:   949 SEALGGAGIDYLENKSCNFGSNNSSGGHMQGKHGRTLKRLVRDFADSHRN 998

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWD2 IPO13 "Importin-13" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1013
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	2e-17
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	4e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1013
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.94
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.9
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.85
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.85
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.73
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.73
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.66
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.65
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.5
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	99.14
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.73
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.51
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	97.82
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.14
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.05
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.0
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.34
KOG1242		569	consensus Protein containing adaptin N-terminal re	95.89
KOG0212		675	consensus Uncharacterized conserved protein [Funct	94.76
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	93.73
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.47
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	92.41
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.35
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.87
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	91.81
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	91.43
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	91.06
KOG1824		1233	consensus TATA-binding protein-interacting protein	90.57
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	89.48
PRK09687		280	putative lyase; Provisional	87.12
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.69
KOG1824		1233	consensus TATA-binding protein-interacting protein	86.58
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.34
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	85.47
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	83.63
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	82.6
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	82.21
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	80.77
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	80.34

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=9.1e-99  Score=834.43  Aligned_cols=917  Identities=18%  Similarity=0.261  Sum_probs=724.4

Q ss_pred             CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcChHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHHHhcCCCC
Q 001789            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (1013)
Q Consensus         1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~~~ffaa~tL~~kI~~~w~~   80 (1013)
                      |+.+.+++|+++|+.||++++++.++.+++||++.|+||+||+++++||+.+++     .++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence            777789999999999999989999999999999999999999999999998764     588999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHchhc--ccCchHHHHHHHhhcccC----CCcchHHHHHHHh
Q 001789           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLT  154 (1013)
Q Consensus        81 l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~l~~~~~----~~~~~~~~L~iL~  154 (1013)
                      +|++++..|+.+++..+.+++.||+.|.||+|.+|+.+.+++.  .||+++.+++..++....    +...+..+|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999999999999999999999999985  699999999999987431    1235789999999


Q ss_pred             hchhccccccccccCCChHHHHHHHHHHHhhhhHHHHHHHHhhhhccCCCCCcchhhhHHHHHHHHHHHHhcccccccCc
Q 001789          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (1013)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~l~~~~L~cl~sWi~~~~~~~~~~  234 (1013)
                      .+|+|..+.+     ++..+|..++.++......+..++..++....+.....-+-..+..+++|+.+|+++.   ..+.
T Consensus       156 ~~p~e~q~~~-----l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~  227 (982)
T KOG2022|consen  156 FMPAEFQHVT-----LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG  227 (982)
T ss_pred             cCcHhhhhcc-----chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence            9999987543     6778889999999999999999888877664322100001135688999999999965   2232


Q ss_pred             chhcccchHHHHHHhccC--CCcHHHHHHHHH---------------HHhhcCC--ChhH---HHHhhhhh-hHHhhh-c
Q 001789          235 GSLAAHPLLNFVFNSLQV--QSSFDVAIEVLV---------------ELVGRHE--GLPQ---ALLCRVPF-LKELLL-L  290 (1013)
Q Consensus       235 ~~~~~~~ll~~l~~~L~~--~~~~~~a~~~l~---------------eil~~~~--~~~~---~l~~~~~~-l~~~~~-~  290 (1013)
                      .  ....++..++..+..  ....+++-+|++               ..+...+  .|.+   .|++...+ +++.-. .
T Consensus       228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            2  233455555555541  112222222221               1111111  1222   23333333 222110 0


Q ss_pred             ccccCCc--HHHHhHHHHHHHHHHHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchh----hhhcHHHHHHHH
Q 001789          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEI----ADSTLQFWSTLA  358 (1013)
Q Consensus       291 ~~~~~~d--~~~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v----~~~~l~FW~~l~  358 (1013)
                      ....+.|  +|....+++++++.+|++.+.+.++      ++-+.+++..|+.|+++||+ |+|    +..+++||++|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence            1334555  7788899999999999999988654      23457899999999999994 554    458899999999


Q ss_pred             HHHhccchhhhhhhhhhhhhhH-HHHHHHHHHHHHhcccCCC-CCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhCchH-
Q 001789          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-  435 (1013)
Q Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~L~~~li~k~~~p~~-~~~~~~~~d~~d~f~~fR~~~~d~l~~~~~~l~~~~-  435 (1013)
                      |++..+..++.   +.....|+ |+|.+|++++++|+.+|.+ .|. .|.+|++|.|+.||++++|+++++|+++|+.. 
T Consensus       385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll  460 (982)
T KOG2022|consen  385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL  460 (982)
T ss_pred             HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99976655432   22334554 9999999999999999987 455 59999999999999999999999999999642 


Q ss_pred             -HHHHHHhhhhcCCC-CCCCchhhhHHHHHHHhhhhcccccCCccchHHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 001789          436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI  513 (1013)
Q Consensus       436 -~l~~~~~~l~~~~~-~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i  513 (1013)
                       ++...++++..++. .+.+|+..|+|+|++.++++.+..+++    +.+..++...++.+.....  +. ..+|++.+|
T Consensus       461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~n--~q-l~~Tss~~i  533 (982)
T KOG2022|consen  461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAPN--PQ-LLSTSSDLI  533 (982)
T ss_pred             HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccCC--hh-HHHHHHHHH
Confidence             44445555444333 466799999999999999999986554    5566666655543311000  11 344668999


Q ss_pred             HhhHHHHHhchhchHHHHHHHHHhcCcCchHHHHHHHHHHHHHHhhcccCCCccHHHHHH-HHHHHHhcCCChhhHHHHH
Q 001789          514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMW-IGEALEKRHLPLEDEEEVV  592 (1013)
Q Consensus       514 g~y~~wl~~~p~~L~~vl~~l~~~l~~~~v~~~Aa~a~~~lc~~c~~~l~~~~~~~~l~~-~~~~l~~~~l~~~~~~~l~  592 (1013)
                      |.|+.|+..||.||++.++.||.++|+++....|..++++||++|+.+|. | +.+.+.. +++.+......+.++.+++
T Consensus       534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-p-y~d~~~a~~~e~l~~~~~~~S~~~klm  611 (982)
T KOG2022|consen  534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-P-YADQFSAVCYEVLNKSNAKDSDRLKLM  611 (982)
T ss_pred             HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-h-HHHHHHHHHHHHhcccccCchHHHHHH
Confidence            99999999999999999999999999998888888999999999999995 3 5555554 4555566778899999999


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCchhhHHHHHHHHHHHHhhhcccccccccCCCC--
Q 001789          593 GAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN--  670 (1013)
Q Consensus       593 eai~~ii~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~i~~~l~~~~~~~--  670 (1013)
                      .+||++++.+.+++ +.+|+.++++|+.++++.++....+     +++..   +. ..-.+.+++++|.++..+.+.-  
T Consensus       612 ~sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~-----~~e~~---l~-~~~~l~~iS~LftSL~~~~~~~d~  681 (982)
T KOG2022|consen  612 KSIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGID-----DQENH---LR-IAFQLNTISALFTSLINKKDIIDT  681 (982)
T ss_pred             HHHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCC-----CHHHH---HH-HHHHHHHHHHHHhccCCCCccccc
Confidence            99999999998766 6899999999999999998776532     22221   22 2334677788888776433211  


Q ss_pred             -CC-------CCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhchhh-hhhHHHHHHHHHHhhhhcCC
Q 001789          671 -PA-------GDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQN  741 (1013)
Q Consensus       671 -~~-------~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~k~~i~~~~~~~-~~~l~~l~~~l~~~f~~~~~  741 (1013)
                       .+       +..|++.++++++|+++.++. +|.++.+++|++|.+++++++++++.+ .|++|.++.++.+ |... +
T Consensus       682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~  758 (982)
T KOG2022|consen  682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-C  758 (982)
T ss_pred             cchhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-h
Confidence             00       123788899999999999999 799999999999999999999998877 8999999999987 7644 5


Q ss_pred             cchHHHHhHHHHHHhcCCCCcchhHHHHHHHHhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHHHHhhHHHHhcchhch
Q 001789          742 HECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALL  821 (1013)
Q Consensus       742 ~~~~L~l~s~li~~~g~~~~~~~~i~~l~~~l~~~t~l~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~l~~~~~~~l  821 (1013)
                      ...-+.+..+++..+..++.+.+.+...+..+++.+ +..+.+. .+.++||+.+.+|++++.++++.|+.+.++...+-
T Consensus       759 ~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~t  836 (982)
T KOG2022|consen  759 LAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFT  836 (982)
T ss_pred             HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHH
Confidence            555677888888888777788888888777677776 6666664 47999999999999999999999999998643444


Q ss_pred             HHHHHHHHHHhccCChhHHHHHHHHHHHHHhhhhhhccCCCCCCCCcchHHHHHHHHHhhhHHHHHHHHHHhcCCCcccc
Q 001789          822 EVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR  901 (1013)
Q Consensus       822 ~~il~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Lv~~ll~~l~g~~~rs~  901 (1013)
                      ..++.+++..++.+|+.+++++++||+.|+....+            .+.+.+.+++.+.|+.|+.++|+|++|.++||.
T Consensus       837 s~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~  904 (982)
T KOG2022|consen  837 SLILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRST  904 (982)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccch
Confidence            45666999999999999999999999998876532            235789999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHhchhcccchhcccCHHHHHHHHHHHhc--cCCcccCCchhhccccHHHHHHHhhhhhhhhhccccC
Q 001789          902 VHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSAVQ--VLPAEYLKQGETETLPPVWLKALAGAASDYLESMSCN  979 (1013)
Q Consensus       902 ~~~~~~iL~~L~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~--~~p~~~~~~~~~~~F~~~l~~~l~~~~~~~~~~~~~~  979 (1013)
                      ++.++|||++|+++|+             ..++.|+.++|.  +||+..+++++|++|++++++.               
T Consensus       905 ld~~aDIL~al~~k~~-------------se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~llre---------------  956 (982)
T KOG2022|consen  905 LDALADILLALNAKFF-------------SETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLLRE---------------  956 (982)
T ss_pred             hHHHHHHHHHHHHhhh-------------HHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHHHH---------------
Confidence            9999999999999885             789999999998  9998889999999999999776               


Q ss_pred             CCCCCCCccccccchHHHHHHHHHHHhhcCCC
Q 001789          980 GGNSNYGHMQGKGGRVLKRIIREFADSHRNVN 1011 (1013)
Q Consensus       980 ~~~~~~~~~~~~~~r~~~~~~rdF~~~~rg~~ 1011 (1013)
                                ..++|.++..+.+||+.|||+.
T Consensus       957 ----------r~n~R~~k~~il~~~L~~~~l~  978 (982)
T KOG2022|consen  957 ----------RGNKRNFKQQILEFNLACTGLP  978 (982)
T ss_pred             ----------HhcHHHHHHHHHHHHHHhcCCC
Confidence                      2456999999999999999985

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1013
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		3e-18
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-14
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		1e-08

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 193/951 (20%), Positives = 378/951 (39%), Gaps = 123/951 (12%) Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68 V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80 Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128 L KI + + ++L L RF+SG +LT++C+AL++L L + P Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183 + +LF + + +A+LE+LTVLPEE S+ R+ E Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199 Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 + P++ + L Q S +K+L+C SWV+ E+ A L+ Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243 Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299 F +LQ FD ++E +V + + + LL +P +GD + Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303 Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353 G+ + +G+ + VE LAL + ++ C P + + TL F Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363 Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413 W TL IL + A+ + + ++ V+ L+D LL +AQ D + Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420 Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470 +R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520 + + S+ + G + ++ R LAD IG+ S+W+ Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 + +L + + S + S L+KIC + + P I+ + L K Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579 Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636 + ++ A+ +L ++ +E+ NL + L+S + + KL + N +++ Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638 Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 H + + ++ + G LPV P G +P+ +L+ + +++K+ Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692 Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 S+ + + + A C ++++ F ++PQ+ + L + + T +V Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751 Query: 754 EEFGHKDEYGP------LFVT--TFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTF 805 F H+ + P L VT T F Q PD+V+++ + Sbjct: 752 HIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR-----------DHPDIVDSFMQLLAQA 800 Query: 806 VRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSI 865 ++ + ++ ++ FQ A + A+ + + L C Sbjct: 801 LK-RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC----------- 848 Query: 866 PEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAIC 916 G ++ +V+ G L+ V+ A+ G ++ S + A IL L C Sbjct: 849 --GEVESVG-KVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC 896

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1013
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-108
2x1g_F		971	Cadmus; transport protein, developmental protein,	2e-86
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	4e-56
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	1e-53
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	7e-49
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	4e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	8e-07
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	3e-06

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  358 bits (920), Expect = e-108
 Identities = 188/994 (18%), Positives = 378/994 (38%), Gaps = 97/994 (9%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760
            +  A C     ++++    F  ++PQ+ + L   + +       +     ++  F H+ 
Sbjct: 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHEP 758

Query: 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL 820
            + P     F   +                 PD+V+++    +  ++      L     +
Sbjct: 759 AHFPPIEALFLLVTSVTLT---LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815

Query: 821 LEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880
             V FQ A +           A+  + +  L  C                     +V+  
Sbjct: 816 KAV-FQCAVLALKFPEAPTVKASCGFFTELLPRC--------------GEVESVGKVVQE 860

Query: 881 SGEGLVSNVVYALLGVSAMSRVHKCATILQQLAAICSISERTSGKAILSWESLQGWLHSA 940
            G  L+  V+ A+ G ++ S +   A IL  L   C             +  L  W+  A
Sbjct: 861 DGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHC-------------FSLLSMWIKEA 907

Query: 941 VQV--LPAEYLKQGETETLPPVWLKALAGAASDY 972
           +Q    P+  L   + +T      + +     + 
Sbjct: 908 LQPPGFPSARLSPEQKDTF----SQQILRERVNK 937

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1013
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-08
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	3e-06

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 91/749 (12%), Positives = 192/749 (25%), Gaps = 66/749 (8%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185
              + L      L S+D N        L  + E+  +   SD         +    ++  
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD------VLDRPLNIMI-- 174

Query: 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245
            P  ++F    S K                 +R              +Q  +        
Sbjct: 175 -PKFLQFFKHSSPK-----------------IRSHAVACVNQFIISRTQALMLHIDSFTE 216

Query: 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305
              +L      +V   V   LV   E     LL  +  + E  +L    D DE V     
Sbjct: 217 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE-YMLQRTQDQDENVALEAC 275

Query: 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365
                + +      V        L   L++ + +   D  +    ++   T+      + 
Sbjct: 276 EFWLTLAEQPICKDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLV 425
               +++   +           D        D  S  +          V   +   ELL 
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394

Query: 426 DICQLL---RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD--F 480
            I  LL              G      +     +         +   +     +      
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 454

Query: 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540
                L        S+    ++  +   L   I   +K +     +A   L   A     
Sbjct: 455 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----- 509

Query: 541 AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600
                     L  I +       +  + + L+ + +A+      +         I +++ 
Sbjct: 510 ---CTELVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR----- 655
            +  K        + L    E +  +     +  L +    Y + ++   + L +     
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 625

Query: 656 ---------MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706
                               L     G       L     +L  +++    +   +  ++
Sbjct: 626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685

Query: 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTN 735
              L    ++  QH    +   +  L TN
Sbjct: 686 FALLGDLTKACFQHVKPCIADFMPILGTN 714

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1013
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	100.0
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	100.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	100.0
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.94
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.71
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.22
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.15
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.1
d1b3ua_		588	Constant regulatory domain of protein phosphatase	99.02
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.81
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	97.12
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	90.68

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-33  Score=227.65  Aligned_cols=697  Identities=12%  Similarity=0.111  Sum_probs=412.1

Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-----
Q ss_conf             99999999960499958799999999997119--48999999965359878776302789877989999823788-----
Q 001789            7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----   79 (1013)
Q Consensus         7 ~~v~~ai~~ly~~~d~~~~~~A~~~L~~~q~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~kI~~~w~-----   79 (1013)
                      +++.+++.....+||++.|++|+++|.+++++  |+.+..+.+++...+    .+.++|++|+..|++.+.++|.     
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             9999999998559899999999999999874471689999999997699----998999999999999851145022356


Q ss_pred             -------CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHH-C--CCCCHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf             -------8894789999999999999823799799999999999998041-2--56755999999941035898404999
Q 001789           80 -------YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAV  149 (1013)
Q Consensus        80 -------~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~aLa~l~~~~-~--~W~~~i~~li~~l~~~~~~~~~~~~l  149 (1013)
                             .++++.+..+|+.+++.+.   ..++.|+++++.+++.++... +  .||+.++.++..+.+.. +.......
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-~~~~~~~a  155 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRAS  155 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCC-CHHHHHHH
T ss_conf             77666732999999999999999883---998899999999999999976776763889999999856999-58999999


Q ss_pred             HHHHHHCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99972100000124655567896789999999974036999999995620148999762156489999999999860366
Q 001789          150 LEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCF  229 (1013)
Q Consensus       150 L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~  229 (1013)
                      |.++..+.|+....      ...         +......++..+.+.+....      .+..++..+++|+.+++.+.  
T Consensus       156 l~~l~~i~e~~~~~------~~~---------~~~~~~~il~~i~~~~~~~~------~~~~v~~~a~~~l~~~~~~~--  212 (861)
T d2bpta1         156 LLALGYMCESADPQ------SQA---------LVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI--  212 (861)
T ss_dssp             HHHHHHHHHTSSTT------SST---------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC--
T ss_pred             HHHHHHHHHHHHHH------HHH---------HHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHH--
T ss_conf             99999999883477------888---------89889999999999873334------78999999999999999987--


Q ss_pred             CCCCCCHH---CCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf             65571011---012159999973169881899999999995148894698986434238751000004783889927999
Q 001789          230 TEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLAC  306 (1013)
Q Consensus       230 ~~~~~~~~---~~~~ll~~l~~~L~~~~~~~~a~~~l~eii~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~~~~~~l~~  306 (1013)
                         +....   ....+++.++..+                                           .+++.+.....+.
T Consensus       213 ---~~~~~~~~~~~~~~~~l~~~~-------------------------------------------~~~~~~~~~~~~~  246 (861)
T d2bpta1         213 ---KNNMEREGERNYLMQVVCEAT-------------------------------------------QAEDIEVQAAAFG  246 (861)
T ss_dssp             ---HHHHTSHHHHHHHHHHHHHHH-------------------------------------------TCSCHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHH-------------------------------------------CCCCHHHHHHHHH
T ss_conf             ---676776665447777679885-------------------------------------------6998999999999


Q ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHH-HCCCCCCCCCHHHHHCHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHHH
Q ss_conf             9999978645999816934899999998-000688877303440099999999887003234544---434344521889
Q 001789          307 LMSEIGQAAPSLIVEASPEALALADALL-SCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK---NKKHVEDMFFSV  382 (1013)
Q Consensus       307 l~~~~~e~~~~~l~~~~~~~~~ll~~ll-~~~~~p~~d~~v~~~~l~FW~~l~~~l~~~~~~~~~---~~~~~~~~~~~~  382 (1013)
                      .+..+.+.+...+..   .....+..++ ......  +.++...+++||..+.+...+.......   ..........+.
T Consensus       247 ~l~~i~~~~~~~~~~---~l~~~l~~l~~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (861)
T d2bpta1         247 CLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS  321 (861)
T ss_dssp             HHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999998877899999---99989999999873275--4999999999999999999889999986203678999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             99999999986066899888989888863399999999999999988507067999998633139999988303458999
Q 001789          383 FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLF  462 (1013)
Q Consensus       383 ~~~L~~~l~~k~~~p~~~~~~~~~~d~~d~f~~fR~~~~D~l~~~~~il~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~  462 (1013)
                      +..++..+..-+..+.++        ++++....|.....++...+..++.+ ++......... ...+.+|...+++++
T Consensus       322 l~~i~~~l~~~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~a~~  391 (861)
T d2bpta1         322 IKDVVPNLLNLLTRQNED--------PEDDDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQ-NITADNWRNREAAVM  391 (861)
T ss_dssp             HHHHHHHHHHHTTCCCCC---------CCCCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHH-HTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHCCHH-HHHHHCCHHHH-HHHHHHHHHHHHHHH
T ss_conf             999999999998873024--------44014778888999988877603314-66541111354-200177788888998


Q ss_pred             HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---HHCHHHHHHHHHHHCC
Q ss_conf             8874221013468766647899999983168535555679999988999998418889865---3324999999998117
Q 001789          463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAGIS  539 (1013)
Q Consensus       463 ~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~---p~~L~~vl~~l~~~l~  539 (1013)
                      +++++++....+.....++.++..+.....++.+.      +|.++ ++++|++.+++...   ..+++.+++.++..+.
T Consensus       392 ~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~  464 (861)
T d2bpta1         392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ  464 (861)
T ss_dssp             HHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHH------HHHHH-HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99998841026668887899999998873376205------66689-889999999813010047762045689986024


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             6-8327999999999999932004997508999999998----8726999452999999999997159907889999999
Q 001789          540 E-AVSSNACASALRKICEDASALIDEPSNLEILMWIGEA----LEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR  614 (1013)
Q Consensus       540 ~-~~v~~~Aa~al~~lc~~c~~~l~~~~~~~~l~~~~~~----l~~~~l~~~~~~~l~eai~~ii~~lp~~~~~~~~l~~  614 (1013)
                      + +.+...++.++..++..+...... ...+.+......    ......+...+...+++++.++...+..  ...++..
T Consensus       465 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~--~~~~~~~  541 (861)
T d2bpta1         465 DHPKVATNCSWTIINLVEQLAEATPS-PIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSAS  541 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSSSSSC-GGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_conf             67089999999999999875230221-14688754788999987421234899999999899999986888--8999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             87999999996640269987777961367777777887875210013335567889888854899999899999999973
Q 001789          615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS  694 (1013)
Q Consensus       615 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~  694 (1013)
                      +.......+.+................. ..+  .......+..+++....          ...++...+++.+...+. 
T Consensus       542 l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l--~~~~~~~l~~~~~~~~~----------~~~~~~~~l~~~l~~~l~-  607 (861)
T d2bpta1         542 ISTFVMDKLGQTMSVDENQLTLEDAQSL-QEL--QSNILTVLAAVIRKSPS----------SVEPVADMLMGLFFRLLE-  607 (861)
T ss_dssp             HHHHHHHHHHHHTTSCGGGCCHHHHHHH-HHH--HHHHHHHHHHHHHHCGG----------GTGGGHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHHHCC-
T ss_conf             9999999999999888654116677679-999--99999999999861536----------579999999999751001-


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             110412899999999999999750204652899999999744210776--317877699999806899860159999999
Q 001789          695 EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFGHKDEYGPLFVTTFER  772 (1013)
Q Consensus       695 ~~~~~~~v~e~~c~~~k~~i~~~~~~~~~~l~~i~~~l~~~f~~~~~~--~~~L~l~~~li~~~~~~~~~~~~i~~l~~~  772 (1013)
                       -..+..+.+.++.++......++..+.|+++.+++.+........+.  ...+.+.+.+....+.  ...+.+..++..
T Consensus       608 -~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~--~~~~~~~~i~~~  684 (861)
T d2bpta1         608 -KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE--DFRRYSDAMMNV  684 (861)
T ss_dssp             -STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG--GGHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf             -58836588789999988887745789999999705999873799889999999999999997578--727119999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCHHHHHHHHHHHHCC
Q ss_conf             76678899861579899897469999999999997725998710202229999999987225
Q 001789          773 FSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTA  834 (1013)
Q Consensus       773 l~~~t~l~~l~~~~~~~~~pDi~~~~f~l~~~~l~~~p~~~~~~~~~~l~~i~~~~l~~l~~  834 (1013)
                      +     +..+.   +...++++....+..++.++.+.+..|.    +.++.++.....++..
T Consensus       685 L-----~~~l~---~~~~~~~~k~~~~~~l~~i~~~~~~~~~----~~l~~~~~~l~~~~~~  734 (861)
T d2bpta1         685 L-----AQMIS---NPNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNT  734 (861)
T ss_dssp             H-----HHHHH---CTTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTC
T ss_pred             H-----HHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
T ss_conf             9-----99857---8888899999999999999999879889----9999999999998576

PyMOL of d2bpta1

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure