Citrus Sinensis ID: 001791

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010--
MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
ccccHHHccHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHccc
ccccccHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHccccccccEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHccHHHHHHHHHHHHHHHHccccccHHHHcc
MAAESTHLQQSQLAVilgpdsapFETLISHLMSTSNEQRSEAELLFNLckqqdpdslTLKLAHLLQRSPHPEARAMAAVLLRKLLtrddsflwprlslhtQSSLKSMLLQSIQLESAKSISKKLCDTVSELAsnilpengwpellpfmfqcvssdsvklQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNcltnsnnpdVKIAALNAVINFIQCLtssadrdrFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARErapgmmrkLPQFINRLFAILMSMLLDieddplwhsaetededagessnysvgQECLDRLAIAlggntivpvaseqlpaylaapEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLnsfrdphpRVRWAAINAIGQlstdlgpdlqnqfhpqvlpalagamddfqnprvQAHAASAVLnfsenctpeiltpYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLqgsqmetddpttSYMLQAWARLCKClgqdflpymsvvmppllqsaqlkpdvtitsadsdneiedsdddsmetiTLGDKRIGIKTSVLEEKATACNMLCCYADelkegffpwidqvaptLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEkglapgrnesYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIqisgplldegqvRSIVDEIKQVITASSSRKRERAERakaedfdaEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAflpffdelssyltpmwgkdktaEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVcaefggsvvkPLVGEALSRLNVvirhpnalqpenlMAYDNAVSALGKICQFHRDSIDAAQVLK
maaesthlqqSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAesleegtrHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSadsdneiedsdddsmetitlgdkrigikTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQvitasssrkreraerakaedfdaeeselikeeneqeeEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNeataqealellielaGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWqkhhaalialaqiaEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAdsdneiedsdddsmeTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITasssrkreraerakaedfdaeeselikeeneqeeeVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
**************VIL**************************LLFNLCK******LTLKLAHLL********RAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL*****ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH***************SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA*QVMEVL**************TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ*****************************ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVI************************************VFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS********
******************PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER*****RK**QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATD*SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS*****DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
**********SQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA**************VGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVIT**********************************EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
**************VILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA*******GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAK*EDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAA*VLK
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MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKxxxxxxxxxxxxxxxxxxxxxVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1012 2.2.26 [Sep-21-2011]
O00410 1097 Importin-5 OS=Homo sapien yes no 0.954 0.880 0.380 0.0
Q8BKC5 1097 Importin-5 OS=Mus musculu yes no 0.954 0.880 0.378 0.0
O60518 1105 Ran-binding protein 6 OS= no no 0.951 0.871 0.356 1e-173
Q8BIV3 1105 Ran-binding protein 6 OS= no no 0.951 0.871 0.357 1e-173
O744761095 Importin subunit beta-3 O yes no 0.945 0.873 0.349 1e-159
P323371089 Importin subunit beta-3 O yes no 0.930 0.865 0.290 1e-100
Q54EW31067 Probable importin-5 homol yes no 0.924 0.877 0.265 3e-94
P40069 1113 Importin subunit beta-4 O no no 0.847 0.770 0.221 2e-40
O601001067 Probable importin subunit no no 0.898 0.851 0.210 9e-37
Q8TEX91081 Importin-4 OS=Homo sapien no no 0.846 0.792 0.235 2e-34
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function desciption
 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/1005 (38%), Positives = 594/1005 (59%), Gaps = 39/1005 (3%)

Query: 24   FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
            F  L+ +L+S  N  R +AE  +     Q    +T  L  +   +   EAR MAAVLLR+
Sbjct: 11   FYLLLGNLLSPDNVVRKQAEETYENIPGQS--KITFLLQAIRNTTAAEEARQMAAVLLRR 68

Query: 84   LLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG--- 140
            LL+     ++P L    Q+++KS LL  IQ+E+  S+ KK+CD  +ELA N++ E+G   
Sbjct: 69   LLSSAFDEVYPALPSDVQTAIKSELLMIIQMETQSSMRKKVCDIAAELARNLIDEDGNNQ 128

Query: 141  WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD 200
            WPE L F+F  VSS +V L+E+A  IF       G+    +L  +  + + C+ +  +P 
Sbjct: 129  WPEGLKFLFDSVSSQNVGLREAALHIFWNFPGIFGNQQQHYLDVIKRMLVQCMQDQEHPS 188

Query: 201  VKIAALNAVINFIQCLTSS-ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259
            ++  +  A   FI     + A    F DLLP  ++ + +S    +++     L+ L+E+A
Sbjct: 189  IRTLSARATAAFILANEHNVALFKHFADLLPGFLQAVNDSCYQNDDSV----LKSLVEIA 244

Query: 260  GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319
             T P++LR  L   +   L++    SL    R LA+E ++TL+E    A  M+RK    +
Sbjct: 245  DTVPKYLRPHLEATLQLSLKLCGDTSLNNMQRQLALEVIVTLSET---AAAMLRKHTNIV 301

Query: 320  NRLFAILMSMLLDIEDDPLWHSA-ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378
             +    +++M++D+E+D  W +A E ED+D    SN   G+  LDR+A  LGG  ++P+ 
Sbjct: 302  AQTIPQMLAMMVDLEEDEDWANADELEDDDF--DSNAVAGESALDRMACGLGGKLVLPMI 359

Query: 379  SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438
             E +   L  P+W+  HA L+AL+ I EGC + M   L ++++ VL   +DPHPRVR+AA
Sbjct: 360  KEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPRVRYAA 419

Query: 439  INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498
             NA+GQ++TD  P  Q +FH +V+ AL   M+D  N RVQAHAA+A++NF+E+C   +L 
Sbjct: 420  CNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTEDCPKSLLI 479

Query: 499  PYLDGIVS--------KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLK 550
            PYLD +V         KL  L+Q G ++V E  +T++ASVAD+++E F  YYD  MP LK
Sbjct: 480  PYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDLFMPSLK 539

Query: 551  AILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG--SQMETDDP 608
             I+ NA  K  R+LR K++ECISL+G+AVGK+KF  DA  VM++L+  Q   + ME DDP
Sbjct: 540  HIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTDFNDMEDDDP 599

Query: 609  TTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSM 668
              SYM+ AWAR+CK LG++F  Y+ VVM PL+++A +KP+V +   D+ +    SDDD  
Sbjct: 600  QISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALL--DTQDMENMSDDDGW 657

Query: 669  ETITLGDKR-IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHE 727
            E + LGD++  GIKT+ LEEK+TAC ML CYA ELKEGF  + +QV   +VPLLKFYFH+
Sbjct: 658  EFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMVPLLKFYFHD 717

Query: 728  EVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICAS 787
             VR AA  +MP LL  A++         R   Y+ Q+  F+  AL++A+  EPD+++ + 
Sbjct: 718  GVRVAAAESMPLLLECARV---------RGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 768

Query: 788  MLDSLNECIQISG-PLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELI 846
            ++ S  +CI++ G   L+      +   +K  +      +  R  + + ED+D +  E +
Sbjct: 769  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 828

Query: 847  KEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIF 906
            ++E++ +  +  +V +IL ++  ++K   LP+F++L   +  +    +   +R+  +CIF
Sbjct: 829  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 888

Query: 907  DDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEAL 966
            DDV E C  A+ KY E +L  +L+   D + +VRQAA YGLGV A++GG   +P   EAL
Sbjct: 889  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 948

Query: 967  SRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011
              L  VI+  ++   EN+ A +N +SA+GKI +F  D ++  +VL
Sbjct: 949  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVL 993
Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of ribosomal proteins RPL23A, RPS7 and RPL5. Binds to a beta-like import receptor binding (BIB) domain of RPL23A. In vitro, mediates nuclear import of H2A, H2B, H3 and H4 histones. In case of HIV-1 infection, binds and mediates the nuclear import of HIV-1 Rev.
Homo sapiens (taxid: 9606)
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function description
>sp|P32337|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSE1 PE=1 SV=2 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function description
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1012
225435754 1116 PREDICTED: importin-5 [Vitis vinifera] 0.999 0.905 0.905 0.0
449463855 1116 PREDICTED: LOW QUALITY PROTEIN: importin 0.999 0.905 0.891 0.0
224056978 1114 predicted protein [Populus trichocarpa] 0.996 0.904 0.891 0.0
224075980 1114 predicted protein [Populus trichocarpa] 0.996 0.904 0.896 0.0
356525274 1114 PREDICTED: importin-5-like [Glycine max] 0.992 0.901 0.887 0.0
297812163 1116 EMB2734 [Arabidopsis lyrata subsp. lyrat 0.999 0.905 0.853 0.0
15241189 1116 armadillo/beta-catenin-like repeat-conta 0.999 0.905 0.851 0.0
357518889 1117 Ran-binding protein [Medicago truncatula 0.999 0.905 0.878 0.0
225441589 1116 PREDICTED: importin-5 [Vitis vinifera] 0.999 0.905 0.859 0.0
3565125051083 PREDICTED: importin-5-like [Glycine max] 0.963 0.900 0.865 0.0
>gi|225435754|ref|XP_002285720.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1854 bits (4803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1011 (90%), Positives = 970/1011 (95%)

Query: 1    MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60
            M  EST LQQ+QLA ILGPD  PFETLISHLMSTSN+QRS AELLFNLCKQ DP+SL+LK
Sbjct: 1    MDPESTQLQQAQLAAILGPDPGPFETLISHLMSTSNDQRSHAELLFNLCKQSDPNSLSLK 60

Query: 61   LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSI 120
            LAHLLQ SPH EARAMAA+LLRK LTRDDS+LWPRLS  TQSSLKS+LL  IQ E AKSI
Sbjct: 61   LAHLLQFSPHIEARAMAAILLRKQLTRDDSYLWPRLSASTQSSLKSILLGCIQREDAKSI 120

Query: 121  SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180
            SKKLCDTVSELAS+ILPENGWPELLPFMFQCV+SDS KLQE+AFLIFAQL+QYIG+TL P
Sbjct: 121  SKKLCDTVSELASSILPENGWPELLPFMFQCVTSDSAKLQEAAFLIFAQLAQYIGETLVP 180

Query: 181  HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL 240
            H+KHLH+VFL  LT+S++ DVKIAAL+A INFIQCL+SSADRDRFQDLLP MMRTLTE+L
Sbjct: 181  HIKHLHSVFLQSLTSSSSSDVKIAALSAAINFIQCLSSSADRDRFQDLLPAMMRTLTEAL 240

Query: 241  NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300
            N G EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA+EFVIT
Sbjct: 241  NCGQEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAVEFVIT 300

Query: 301  LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE 360
            LAEARERAPGMMRKLPQFI+RLFAILM MLLDIEDDP WHSA++EDEDAGESSNYSVGQE
Sbjct: 301  LAEARERAPGMMRKLPQFISRLFAILMKMLLDIEDDPAWHSADSEDEDAGESSNYSVGQE 360

Query: 361  CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420
            CLDRLAI+LGGNTIVPVASE LPAYLAAPEWQKHHAALIALAQIAEGC+KVM+KNLEQV+
Sbjct: 361  CLDRLAISLGGNTIVPVASELLPAYLAAPEWQKHHAALIALAQIAEGCSKVMIKNLEQVV 420

Query: 421  SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480
            +MVLN+F+DPHPRVRWAAINAIGQLSTDLGPDLQ Q+H +VLPALA +MDDFQNPRVQAH
Sbjct: 421  TMVLNTFQDPHPRVRWAAINAIGQLSTDLGPDLQVQYHQRVLPALAASMDDFQNPRVQAH 480

Query: 481  AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540
            AASAVLNFSENCTP+ILTPYLDGIV KLLVLLQNGKQMVQEGALTALASVADSSQEHFQK
Sbjct: 481  AASAVLNFSENCTPDILTPYLDGIVGKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540

Query: 541  YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600
            YYDAVMP+LKAIL+NATDKSNRMLRAK+MECISLVGMAVGKDKFRDDAKQVMEVLMSLQG
Sbjct: 541  YYDAVMPYLKAILMNATDKSNRMLRAKAMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG 600

Query: 601  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660
            SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI
Sbjct: 601  SQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEI 660

Query: 661  EDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720
            E+SDD+SMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL
Sbjct: 661  EESDDESMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPL 720

Query: 721  LKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEP 780
            LKFYFHEEVRKAAVSAMPELLRSAKLA+EKGLA GRNESYVKQLSD+IIPALVEALHKEP
Sbjct: 721  LKFYFHEEVRKAAVSAMPELLRSAKLAVEKGLAQGRNESYVKQLSDYIIPALVEALHKEP 780

Query: 781  DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDA 840
            DTEICASMLD+LNEC+QISG +LDE QVRSIVDEIKQVITASSSRKRERAER KAEDFDA
Sbjct: 781  DTEICASMLDALNECLQISGRILDESQVRSIVDEIKQVITASSSRKRERAERTKAEDFDA 840

Query: 841  EESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERR 900
            EE EL+KEENEQEEEVFDQVGEILGTLIKTFKA+FLPFFDEL+SYLTPMWGKDKTAEERR
Sbjct: 841  EEGELLKEENEQEEEVFDQVGEILGTLIKTFKASFLPFFDELASYLTPMWGKDKTAEERR 900

Query: 901  IAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP 960
            IAICIFDDVAEQCREAALKYY+TYLPFLLEACND+N DVRQAAVYGLGVCAEFGG+  KP
Sbjct: 901  IAICIFDDVAEQCREAALKYYDTYLPFLLEACNDDNSDVRQAAVYGLGVCAEFGGAAFKP 960

Query: 961  LVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011
            LVGEALSRLNVVIRHPNALQP+N+MAYDNAVSALGKICQFHRDSID+AQV+
Sbjct: 961  LVGEALSRLNVVIRHPNALQPDNVMAYDNAVSALGKICQFHRDSIDSAQVV 1011

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449463855|ref|XP_004149646.1| PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224056978|ref|XP_002299105.1| predicted protein [Populus trichocarpa] gi|222846363|gb|EEE83910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224075980|ref|XP_002304857.1| predicted protein [Populus trichocarpa] gi|222842289|gb|EEE79836.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525274|ref|XP_003531251.1| PREDICTED: importin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|297812163|ref|XP_002873965.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] gi|297319802|gb|EFH50224.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15241189|ref|NP_197483.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|14334742|gb|AAK59549.1| unknown protein [Arabidopsis thaliana] gi|15293299|gb|AAK93760.1| unknown protein [Arabidopsis thaliana] gi|332005369|gb|AED92752.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357518889|ref|XP_003629733.1| Ran-binding protein [Medicago truncatula] gi|355523755|gb|AET04209.1| Ran-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225441589|ref|XP_002281591.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512505|ref|XP_003524959.1| PREDICTED: importin-5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1012
TAIR|locus:2183219 1116 emb2734 "AT5G19820" [Arabidops 0.999 0.905 0.781 0.0
UNIPROTKB|O00410 1097 IPO5 "Importin-5" [Homo sapien 0.953 0.879 0.359 4e-161
MGI|MGI:1917822 1097 Ipo5 "importin 5" [Mus musculu 0.953 0.879 0.357 4e-161
UNIPROTKB|F1MPE5 1110 IPO5 "Uncharacterized protein" 0.971 0.885 0.354 7.5e-160
RGD|1308715 1097 Ipo5 "importin 5" [Rattus norv 0.953 0.879 0.355 2.5e-159
UNIPROTKB|F1RP44 1067 IPO5 "Uncharacterized protein" 0.922 0.875 0.362 5.3e-159
FB|FBgn0087013 1105 Karybeta3 "Karyopherin beta 3" 0.953 0.873 0.340 8.6e-159
UNIPROTKB|H0Y8C6 1099 IPO5 "Importin-5" [Homo sapien 0.922 0.849 0.362 1.1e-158
UNIPROTKB|E2RF06 1089 IPO5 "Uncharacterized protein" 0.946 0.879 0.358 1.3e-157
UNIPROTKB|O60518 1105 RANBP6 "Ran-binding protein 6" 0.951 0.871 0.337 7.5e-144
TAIR|locus:2183219 emb2734 "AT5G19820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4067 (1436.7 bits), Expect = 0., P = 0.
 Identities = 791/1012 (78%), Positives = 873/1012 (86%)

Query:     1 MAAESTHLQQSQLAVILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLK 60
             MA+E+  LQQ+QLA++LG DSAPFETLISHLMS+SNEQRS AE LFNL KQ +PD+L+LK
Sbjct:     1 MASEANQLQQAQLAMVLGSDSAPFETLISHLMSSSNEQRSSAESLFNLAKQSNPDTLSLK 60

Query:    61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSI 120
             LAHLLQ SPHPE RAMAAVLLRKLLTRDD++LWPRLSL TQSSLKS +L  IQ E AKSI
Sbjct:    61 LAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKSSMLYCIQHEEAKSI 120

Query:   121 SKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180
             SKK+CDTVSELAS ILPENGWPELLPF+FQCV+S + KLQESAFLI AQLSQY+G+TLTP
Sbjct:   121 SKKICDTVSELASGILPENGWPELLPFVFQCVTSVTPKLQESAFLILAQLSQYVGETLTP 180

Query:   181 HLKHLHAVFLNCLT-NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239
             H+K LH VFL CL+ NS + DVKIAALNAVI+F+QCL +S +RDRFQD+LP M+RTLTES
Sbjct:   181 HIKELHGVFLQCLSSNSASSDVKIAALNAVISFVQCLANSTERDRFQDVLPAMIRTLTES 240

Query:   240 LNNGNXXXXXXXXXXXXXXXGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299
             LNNGN               GTEPRFLRRQLVD+VGSMLQIAEA+SLEE TRHLAIEF++
Sbjct:   241 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDIVGSMLQIAEADSLEESTRHLAIEFLV 300

Query:   300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQ 359
             TLAEARERAPGM+RKLPQFI+RLFA+LM ML DIEDDP W+SAETEDEDAGE+SNYS+GQ
Sbjct:   301 TLAEARERAPGMVRKLPQFIDRLFAVLMKMLEDIEDDPAWYSAETEDEDAGETSNYSMGQ 360

Query:   360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQV 419
             ECLDRLAI+LGGNTIVPVA +Q  AYLAA EW              EGC+KVM+KNL+QV
Sbjct:   361 ECLDRLAISLGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMIKNLDQV 420

Query:   420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQA 479
             +SMVL+ F+ PHPRVRWAAINAIGQLSTDLGPDLQNQ H +VLPALA AMDDFQNPRVQA
Sbjct:   421 VSMVLSQFQSPHPRVRWAAINAIGQLSTDLGPDLQNQHHERVLPALAAAMDDFQNPRVQA 480

Query:   480 HAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539
             HAASAVLNFSENCTPEIL+PYLDG+VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ
Sbjct:   481 HAASAVLNFSENCTPEILSPYLDGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 540

Query:   540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQ 599
             KYYD VMP+LK IL+NATDKS RMLRAKSMECISLVGMAVGKD+F++DA+QVMEVLMSLQ
Sbjct:   541 KYYDTVMPYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMSLQ 600

Query:   600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAXXXXX 659
             GSQME DDP TSYMLQAWARLCKCLGQDFLPYM VVMPPLLQSAQLKPDVTITSA     
Sbjct:   601 GSQMEADDPITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDE 660

Query:   660 XXXXXXXXXXTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719
                       TI LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP
Sbjct:   661 AEDSDDESMETIILGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 720

Query:   720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE 779
             LLKFYFHEEVR+AAVSAMPEL+RSAKLAIEKG + GR+ SY+KQLSD+IIPA++EALHKE
Sbjct:   721 LLKFYFHEEVRRAAVSAMPELMRSAKLAIEKGESQGRDLSYLKQLSDYIIPAMLEALHKE 780

Query:   780 PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITXXXXXXXXXXXXXXXXXXX 839
             PDTEIC SML+++NEC+QISG LLDEG++RSIVDEIKQV+T                   
Sbjct:   781 PDTEICVSMLEAINECLQISGNLLDEGKIRSIVDEIKQVMTASSSRKRERGERAHAEDFD 840

Query:   840 XXXXXXXXXXXXXXXXVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEER 899
                             +FDQVGEILGTL+KTFKA+FLPFFDELSSYLTPMWG+DKTAEER
Sbjct:   841 AEEGELIKEENEQEEEIFDQVGEILGTLVKTFKASFLPFFDELSSYLTPMWGRDKTAEER 900

Query:   900 RIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVK 959
             RIAICIFDDVAEQCREAA KYY+TYLPF+LEACNDE+ +VRQAAVYGLGVCAEFGGSV K
Sbjct:   901 RIAICIFDDVAEQCREAAFKYYDTYLPFVLEACNDESPEVRQAAVYGLGVCAEFGGSVFK 960

Query:   960 PLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011
             PL+GEALSRLNVVI+ PNA Q EN MAYDNAVSA+GKICQFHRDSID++QVL
Sbjct:   961 PLIGEALSRLNVVIQLPNARQSENAMAYDNAVSAVGKICQFHRDSIDSSQVL 1012
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016829 "lyase activity" evidence=ISS
GO:0030089 "phycobilisome" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
UNIPROTKB|O00410 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1917822 Ipo5 "importin 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPE5 IPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RP44 IPO5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0087013 Karybeta3 "Karyopherin beta 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y8C6 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF06 IPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O60518 RANBP6 "Ran-binding protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BKC5IPO5_MOUSENo assigned EC number0.37810.95450.8805yesno
O74476IMB3_SCHPONo assigned EC number0.34960.94560.8739yesno
O00410IPO5_HUMANNo assigned EC number0.38000.95450.8805yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.99LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 2e-12
pfam1364688 pfam13646, HEAT_2, HEAT repeats 8e-07
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 2e-05
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 1e-04
COG51011053 COG5101, CRM1, Importin beta-related nuclear trans 1e-04
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 4e-04
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 8e-04
pfam0298531 pfam02985, HEAT, HEAT repeat 0.002
PRK13800897 PRK13800, PRK13800, putative oxidoreductase/HEAT r 0.003
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 0.003
pfam06122360 pfam06122, TraH, Conjugative relaxosome accessory 0.004
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score = 71.1 bits (174), Expect = 2e-12
 Identities = 113/612 (18%), Positives = 232/612 (37%), Gaps = 59/612 (9%)

Query: 71  PEARAMAAVLLRKLLTRDDSFL-------WPRLSLHTQSSLKSMLLQSIQLESAKSISKK 123
            + R +A ++L+  L  +D  L       W  +   ++  +K M L+++     KS   +
Sbjct: 55  DQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRAL-----KSPEPR 109

Query: 124 LCDTVSELASNI----LPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTL 178
            C   ++L + I    LP + WP L+  M + V  +  V  +  +  I      Y  ++ 
Sbjct: 110 FCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG----YHCESE 165

Query: 179 TPHL------KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLM 232
            P          L A+ +  L N     V++AAL A+++ +  +  +   +  ++     
Sbjct: 166 APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYF--- 222

Query: 233 MRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRH 292
           M+ + E+    +E     A   L ++     +F++  + + + ++      +S  +    
Sbjct: 223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALT-GRFMKSQNDEVAI 281

Query: 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352
            A+EF  T+ E         + LP+   +      + + D+  + L    E + ED    
Sbjct: 282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPE-LLSLLEKQGEDYYGD 340

Query: 353 --SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK 410
             +       CL   A  L G+ I+      +   + +  W    AA++A   +  G  +
Sbjct: 341 DWNPSMAASSCLQLFA-QLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCE 399

Query: 411 VMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAG 467
             + K + Q L  + N   D    V+       G ++  +   +    H   +V  +L G
Sbjct: 400 DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG 459

Query: 468 AMDDFQNPRVQAHAASAVLNFSE------NCTPEILTPYLDGIVSKLL-----VLLQNGK 516
            MD    P    + +    N  +            L  +   I++ L+      L ++  
Sbjct: 460 LMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNL 516

Query: 517 QMVQEGALTALASVA-DSSQEHFQKYYDAVMPFLK---AILVNATDKSNRMLRAKSMECI 572
           ++    AL  L  +  D+  +    +YD     L    ++L       +++L  +     
Sbjct: 517 RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNY 576

Query: 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSY--MLQAWARLCKCLGQDFLP 630
             V  A+ +   R D + V + LM L    +E+  PTT++  +  A + L   L + F  
Sbjct: 577 IGVLEAIIR-TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQ 635

Query: 631 YMSVVMPPLLQS 642
           Y S  +P L ++
Sbjct: 636 YASKFIPYLTRA 647

Length = 858
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat Back     alignment and domain information
>gnl|CDD|237512 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information
>gnl|CDD|218903 pfam06122, TraH, Conjugative relaxosome accessory transposon protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1012
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.97
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.96
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.96
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.94
COG5656970 SXM1 Importin, protein involved in nuclear import 99.93
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.92
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.91
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.89
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.88
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.88
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.88
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.87
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.85
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.85
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.82
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.78
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.78
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.75
KOG1242569 consensus Protein containing adaptin N-terminal re 99.73
KOG1242569 consensus Protein containing adaptin N-terminal re 99.73
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.62
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.62
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.62
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.62
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.6
PTZ00429746 beta-adaptin; Provisional 99.6
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.6
PTZ00429746 beta-adaptin; Provisional 99.58
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.55
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.52
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 99.51
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.48
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.47
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.44
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.44
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.33
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.31
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.28
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.26
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 99.25
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.24
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.18
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.17
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.15
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.13
PRK09687280 putative lyase; Provisional 99.13
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.11
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.09
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.07
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.07
PRK09687280 putative lyase; Provisional 99.07
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.05
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 99.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.02
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.95
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.94
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.93
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.9
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.9
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.88
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.86
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.85
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.84
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.81
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.77
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.74
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.71
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.7
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.68
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.67
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.64
COG5656970 SXM1 Importin, protein involved in nuclear import 98.6
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.5
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.41
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.41
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.39
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.39
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.38
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.38
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.35
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.33
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 98.32
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.29
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.29
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.29
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.27
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.27
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 98.26
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.25
KOG2956516 consensus CLIP-associating protein [General functi 98.25
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.19
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.15
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.14
PF05804708 KAP: Kinesin-associated protein (KAP) 98.14
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.13
KOG2259 823 consensus Uncharacterized conserved protein [Funct 98.11
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.11
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.09
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.09
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 98.06
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.01
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.0
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 97.99
KOG2956516 consensus CLIP-associating protein [General functi 97.97
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.95
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.93
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.93
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.89
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.84
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.79
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.77
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.76
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.76
PF04510174 DUF577: Family of unknown function (DUF577); Inter 97.74
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.73
KOG04141251 consensus Chromosome condensation complex Condensi 97.73
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.73
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.72
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.7
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.7
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.69
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 97.68
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.68
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.68
PF05804708 KAP: Kinesin-associated protein (KAP) 97.67
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.65
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.63
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.63
PF05004309 IFRD: Interferon-related developmental regulator ( 97.62
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.56
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.53
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.53
PF05004309 IFRD: Interferon-related developmental regulator ( 97.51
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.51
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.48
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.48
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.48
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 97.47
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.44
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.42
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.39
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.37
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.37
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.37
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.34
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.3
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.3
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.27
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.27
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.22
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.18
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.12
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.1
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 97.09
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.06
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 97.05
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.05
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.0
TIGR02270410 conserved hypothetical protein. Members are found 96.97
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.93
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.85
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.84
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.81
TIGR02270410 conserved hypothetical protein. Members are found 96.79
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.77
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.69
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 96.64
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.58
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 96.51
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.49
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.49
COG5116926 RPN2 26S proteasome regulatory complex component [ 96.45
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.43
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.36
KOG1293678 consensus Proteins containing armadillo/beta-caten 96.35
KOG1243690 consensus Protein kinase [General function predict 96.25
KOG2149393 consensus Uncharacterized conserved protein [Funct 96.23
KOG2025892 consensus Chromosome condensation complex Condensi 96.22
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 96.12
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.07
KOG2025892 consensus Chromosome condensation complex Condensi 95.89
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 95.82
KOG15171387 consensus Guanine nucleotide binding protein MIP1 95.8
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.75
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 95.7
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 95.67
KOG04131529 consensus Uncharacterized conserved protein relate 95.55
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.43
KOG1243690 consensus Protein kinase [General function predict 95.41
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.41
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.4
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.39
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 95.33
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.29
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 95.23
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.22
COG51011053 CRM1 Importin beta-related nuclear transport recep 95.22
PF05536543 Neurochondrin: Neurochondrin 95.2
KOG18371621 consensus Uncharacterized conserved protein [Funct 95.17
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 95.15
KOG2137700 consensus Protein kinase [Signal transduction mech 95.11
KOG2137700 consensus Protein kinase [Signal transduction mech 95.11
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 95.09
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 95.02
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 94.88
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 94.84
KOG2549576 consensus Transcription initiation factor TFIID, s 94.84
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.82
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.76
KOG0567289 consensus HEAT repeat-containing protein [General 94.65
PF05536543 Neurochondrin: Neurochondrin 94.55
KOG1048717 consensus Neural adherens junction protein Plakoph 94.51
KOG18511710 consensus Uncharacterized conserved protein [Funct 94.38
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.28
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 94.22
KOG1048717 consensus Neural adherens junction protein Plakoph 94.18
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.06
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 94.03
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 94.01
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.01
KOG2549 576 consensus Transcription initiation factor TFIID, s 93.72
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 93.71
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 93.59
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 93.31
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 93.25
KOG3961262 consensus Uncharacterized conserved protein [Funct 93.05
smart00638574 LPD_N Lipoprotein N-terminal Domain. 92.92
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 92.74
COG5116926 RPN2 26S proteasome regulatory complex component [ 92.57
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 92.5
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.35
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 92.28
KOG0567289 consensus HEAT repeat-containing protein [General 92.19
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.16
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 91.88
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 91.56
KOG3961262 consensus Uncharacterized conserved protein [Funct 91.52
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 91.48
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 91.31
KOG3036293 consensus Protein involved in cell differentiation 91.23
cd03561133 VHS VHS domain family; The VHS domain is present i 90.76
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 90.71
KOG2081559 consensus Nuclear transport regulator [Intracellul 90.53
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 90.42
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 90.37
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 90.19
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.18
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 89.73
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 89.53
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 89.5
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 89.41
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 89.2
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 88.98
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 88.84
smart00638574 LPD_N Lipoprotein N-terminal Domain. 88.74
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.48
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 88.29
KOG18511710 consensus Uncharacterized conserved protein [Funct 88.16
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 87.98
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 87.76
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 87.71
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 87.52
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 87.32
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 87.26
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 86.53
PF08146153 BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295 86.5
KOG2005878 consensus 26S proteasome regulatory complex, subun 86.45
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 86.12
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 85.8
KOG3036293 consensus Protein involved in cell differentiation 85.66
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 85.53
KOG1222791 consensus Kinesin associated protein KAP [Intracel 85.52
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 85.25
PF04510174 DUF577: Family of unknown function (DUF577); Inter 84.5
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 84.49
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 84.28
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 83.52
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 83.27
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 83.17
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 83.03
COG5218885 YCG1 Chromosome condensation complex Condensin, su 82.21
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 82.15
KOG2256661 consensus Predicted protein involved in nuclear ex 82.04
cd03561133 VHS VHS domain family; The VHS domain is present i 81.25
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 80.93
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 80.62
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 80.12
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-112  Score=938.12  Aligned_cols=969  Identities=47%  Similarity=0.777  Sum_probs=886.7

Q ss_pred             CChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791           19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL   98 (1012)
Q Consensus        19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~   98 (1012)
                      ||...|.++++.+.+||+++|++||+.|+....+.|  ....|.+++.+++++++|++|++++|+++.+.    |+.++.
T Consensus         1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~   74 (1075)
T KOG2171|consen    1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA   74 (1075)
T ss_pred             CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence            578899999999999999999999999997665334  67899999988999999999999999999986    999999


Q ss_pred             HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791           99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL  178 (1012)
Q Consensus        99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~  178 (1012)
                      +.++.||+.++..+.+|+.+.||+.+|++++.+++.+++. .||+++++|++..+++++..|+.|+.+|..+.+.+++.+
T Consensus        75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~  153 (1075)
T KOG2171|consen   75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL  153 (1075)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence            9999999999999999999999999999999999999996 999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc-CcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001791          179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE  257 (1012)
Q Consensus       179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~  257 (1012)
                      .+++..+.++|.+++.++ +..||..|+++++.++...+ +......|..++|.++..+...+++++.+....++++|.+
T Consensus       154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E  232 (1075)
T KOG2171|consen  154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE  232 (1075)
T ss_pred             chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence            999999999999999998 55599999999999999885 4456778899999999999999999898999999999999


Q ss_pred             HHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCc
Q 001791          258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP  337 (1012)
Q Consensus       258 l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  337 (1012)
                      +++..|+.+.+++.+++++++++..+++.++.+|..|++++.++++   +.|.+.++.+++...+++.++.++.+..+|+
T Consensus       233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~  309 (1075)
T KOG2171|consen  233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD  309 (1075)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence            9999999999999999999999999999999999999999999999   4888888888999999999999999998889


Q ss_pred             cccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001791          338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE  417 (1012)
Q Consensus       338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~  417 (1012)
                      +|...++.|+|+ +.+++..|.+++++++.++|++.++|.+++.+..++.|++|+.|+||+.+++.+++||.+.+.++++
T Consensus       310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~  388 (1075)
T KOG2171|consen  310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP  388 (1075)
T ss_pred             hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999877655554 5678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc
Q 001791          418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL  497 (1012)
Q Consensus       418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l  497 (1012)
                      +|++.++++++|++|+||.+|+.++|+++..+.+.+...+.+.+.|.++..+.+..+++|+.+|+.++-++.+.+.++.+
T Consensus       389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l  468 (1075)
T KOG2171|consen  389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL  468 (1075)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence            99999999999999999999999999999999999977777777888999998877889999999999999999999999


Q ss_pred             cCcHHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791          498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG  576 (1012)
Q Consensus       498 ~~~~~~il~-~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~  576 (1012)
                      .||++.+++ .+.-++++..+.+++.+..+|++++.+.++.|.||++.+||.|...+++..+++.+.+|++.++|++.++
T Consensus       469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~  548 (1075)
T KOG2171|consen  469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA  548 (1075)
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence            999999999 5555667777999999999999999999999999999999999999999887889999999999999999


Q ss_pred             hhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCC
Q 001791          577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS  656 (1012)
Q Consensus       577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~  656 (1012)
                      .++|++.|.|+..++++.+..++.+..+.+++.+++.+.+|+++|+.+|++|.||++.+||.+++....+|+....++  
T Consensus       549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~--  626 (1075)
T KOG2171|consen  549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE--  626 (1075)
T ss_pred             HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--
Confidence            999999999999999999999877677788899999999999999999999999999999999999999887765532  


Q ss_pred             CccccCCCCcccchhhcCCc-eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHH
Q 001791          657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS  735 (1012)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~  735 (1012)
                      +++.+..++++|++...+|+ .++++|+.+++|..||..|+.++..++..|.||++++++..++.+..+++++||++|+.
T Consensus       627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~  706 (1075)
T KOG2171|consen  627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE  706 (1075)
T ss_pred             hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            22222335666777777777 89999999999999999999999999999999999999977777888899999999999


Q ss_pred             hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001791          736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE  814 (1012)
Q Consensus       736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~~~  814 (1012)
                      +++.+++....++.+|      +.++.++...+.|.++..+..+++++++..++++++++++.+|+ ++.+++...+...
T Consensus       707 ~~p~ll~~~~~A~~~~------p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~  780 (1075)
T KOG2171|consen  707 SMPQLLTCALKACQGG------PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG  780 (1075)
T ss_pred             HHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence            9999999987776443      56899999999999999999999999999999999999999997 4888999999988


Q ss_pred             HHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC
Q 001791          815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK  894 (1012)
Q Consensus       815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~  894 (1012)
                      +...+....++.+.+......||+|.++.+..   .|.+..+.+.+.+.+..+++.+++.|.|+|.+++|.+..++.+++
T Consensus       781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~---~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~  857 (1075)
T KOG2171|consen  781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL---DEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK  857 (1075)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH---hhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence            88888887777666643333333333222222   267778999999999999999999999999999999999997666


Q ss_pred             CHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhc
Q 001791          895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR  974 (1012)
Q Consensus       895 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~  974 (1012)
                      ... |..++++++++++.+++...+|.+.++|.++..+.|.+++||++|++++|.++++.+..+.+.....++.|..++.
T Consensus       858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq  936 (1075)
T KOG2171|consen  858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ  936 (1075)
T ss_pred             cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence            666 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhhHHHHHHHHHHHHhHccCCCChhhhc
Q 001791          975 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011 (1012)
Q Consensus       975 ~~~~~~~~~~~~~~na~~~~~~l~~~~p~~~~~~~~~ 1011 (1012)
                      .+..+.+.+...++||++||+||+.++|..+|++||+
T Consensus       937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl  973 (1075)
T KOG2171|consen  937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVL  973 (1075)
T ss_pred             ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH
Confidence            9998888899999999999999999999999999986

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins [] Back     alignment and domain information
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-04
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure 
Iteration: 1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 176/463 (38%), Gaps = 51/463 (11%)
Query: 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ-----YIGDTLTPHLKHLHAVFLNCLT 194
            WP+LLP +   + S+     E AF    ++ +        D L   L  +   FL    
Sbjct: 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK 184
Query: 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN--GNXXXXXXXX 252
           +S+ P ++  A+  V  FI   T +         L L + +  E+L    G+        
Sbjct: 185 HSS-PKIRSHAVACVNQFIISRTQA---------LMLHIDSFIENLFALAGDEEPEVRKN 234
Query: 253 XXXXXXXGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
                    E R  R    + ++V  MLQ    +  +E     A EF +TLAE       
Sbjct: 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQ--RTQDQDENVALEACEFWLTLAEQPICKDV 292
Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGES--SNYSVGQEC----LDR 364
           ++R LP    +L  +L++ +   + D +    + E    G+   S++++ ++C    LD 
Sbjct: 293 LVRHLP----KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL-RKCSAAALDV 347
Query: 365 LAIALGGNTIVPVASEQLPAYLAAPEWXXXXXXXXXXXXXXEGCAKVMVKNLEQVLSMVL 424
           LA  +  + ++P     L   L   EW              EGC + M+  L +++  ++
Sbjct: 348 LA-NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406
Query: 425 NSFRDPHPRVR----WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480
               D    VR    W  ++          PD      P +   L   +D   N RVQ  
Sbjct: 407 QCLSDKKALVRSITCW-TLSRYAHWVVSQPPD--TYLKPLMTELLKRILD--SNKRVQEA 461
Query: 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540
           A SA     E    E L PYL  I+  L+      +         A+ ++ADS   H  K
Sbjct: 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 520
Query: 541 --YYDAVMPFL--KAILVNATDKSNRMLRAKSMECISLVGMAV 579
             Y   +MP L  K  ++   DK    L    +EC+S V  A+
Sbjct: 521 PEYIQMLMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 559

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1012
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-146
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 2e-22
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-127
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-25
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-19
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 4e-07
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 8e-06
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 6e-04
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-116
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-18
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 4e-73
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 1e-05
2x1g_F971 Cadmus; transport protein, developmental protein, 1e-38
2x19_B963 Importin-13; nuclear transport, protein transport; 9e-36
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 2e-30
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-27
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-20
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 7e-19
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-17
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-14
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 2e-20
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 2e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-17
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-12
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 2e-05
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 1e-11
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 4e-10
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-10
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 9e-05
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 7e-08
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-06
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 7e-07
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 3e-06
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 4e-07
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 5e-07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 7e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 8e-07
2db0_A253 253AA long hypothetical protein; heat repeats, hel 1e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 5e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 9e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-07
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-06
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-07
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-05
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 5e-04
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 6e-04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-06
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 5e-06
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-05
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 4e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 4e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 3e-05
3nmz_A458 APC variant protein; protein-protein complex, arma 6e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 7e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  457 bits (1177), Expect = e-146
 Identities = 143/859 (16%), Positives = 311/859 (36%), Gaps = 59/859 (6%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDSF--------LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQLSQYIGDTLTPHLKH----LHAVFL 190
           LP   WPEL+  M     ++  + ++ ++ L    + +         +      L A+  
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 191 NCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250
              +   +  V++AALNA+ + +  + ++ +    +     +M+ + E+    +      
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIEVQAA 243

Query: 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
           A   L ++      F++  +   +   L IA  +S  +    + +EF  T+ E       
Sbjct: 244 AFGCLCKIMSKYYTFMKPYMEQALY-ALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPL-WHSAETEDEDAGESSNYSVGQECLDRLAIAL 369
            + + PQ   + +   +S + D+  + L   + + ED +  + +       CL   A   
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA-QN 361

Query: 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFR 428
            GN I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   
Sbjct: 362 CGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN 421

Query: 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLN 487
           D   +V+      IG+++  +   +  Q H P V+ A    + D  +P+V  + +  ++N
Sbjct: 422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIIN 479

Query: 488 FSENCTPEILTPYLDGIVSKLLVLLQ-----NGKQMVQEGALTALASVADSSQEHFQKYY 542
             E       +P  +   + +  L+      + +   +  A +AL ++ + + +   +  
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS 539

Query: 543 DAVMPFLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLM 596
            ++  F+   L          L  +       ++   L  +A    K     + V ++LM
Sbjct: 540 ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLM 599

Query: 597 SLQGSQMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITS 653
            L    +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITA 659

Query: 654 ADSDNEIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFP 708
                +I +S ++         + +  + I    +  E K    ++    A  +   F P
Sbjct: 660 VGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719

Query: 709 WIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES------YVK 762
           +++ +    V            +A        +  A L    G+  G ++       YV 
Sbjct: 720 YLNDIMALCVAAQNTKPENGTLEAL--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777

Query: 763 QLSDFIIPALVEALHKEPDTEICASMLDSLNECI-----QISGPLLDEGQVRSIVDEIKQ 817
            +  FI   + E      +     + +  + +               +  V   +   + 
Sbjct: 778 TIFQFIA-QVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRS 836

Query: 818 VITASSSRKRERAERAKAE 836
                S   ++ A  A+ +
Sbjct: 837 G-QLFSQATKDTARWAREQ 854
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1012
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 4e-77
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 4e-67
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 6e-14
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-61
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 6e-21
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 8e-48
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-07
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-05
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 1e-40
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-30
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-27
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-22
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-18
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-14
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 5e-13
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-10
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-04
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-11
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-08
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 4e-06
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 0.003
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 5e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-04
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 5e-04
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 0.001
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.004
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  269 bits (686), Expect = 4e-77
 Identities = 136/861 (15%), Positives = 306/861 (35%), Gaps = 63/861 (7%)

Query: 25  ETLISHLMSTSNEQRSEAE-LLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRK 83
           + L + ++S     R  +E  L  L          L    L+  +   E R +AA+ L+ 
Sbjct: 8   QLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKN 67

Query: 84  LLTRDDS--------FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI 135
            L   DS            ++S   ++ +K+  L ++       I+      ++ +A   
Sbjct: 68  ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIE 126

Query: 136 LPENGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL- 193
           LP   WPEL+  M     +     ++ ++ L    + +         +   + + +  + 
Sbjct: 127 LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ 186

Query: 194 ---TNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250
              +   +  V++AALNA+ + +  + ++ +R+  ++    +M+ + E+    +      
Sbjct: 187 GAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN---YLMQVVCEATQAEDIEVQAA 243

Query: 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPG 310
           A   L ++      F++  +   +   L IA  +S  +    + +EF  T+ E       
Sbjct: 244 AFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAY 302

Query: 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370
            + + PQ   + +   +S + D+  + L       ++   +  N S+      +L     
Sbjct: 303 ELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362

Query: 371 GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKN-LEQVLSMVLNSFRD 429
           GN I+    E +   + A  W+   AA++A   I +G  KV     + Q L  +LN   D
Sbjct: 363 GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND 422

Query: 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489
              +V+      IG+++  +   +  Q H   +           +P+V  + +  ++N  
Sbjct: 423 QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

Query: 490 ENCTPEILTPYLDGIVSKLLVLLQNGKQ-----MVQEGALTALASVADSSQEHFQKYYDA 544
           E       +P  +   + +  L+    +       +  A +AL ++ + + +   +   +
Sbjct: 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541

Query: 545 VMPFLKAILVNATDKSNRMLRAKS------MECISLVGMAVGKDKFRDDAKQVMEVLMSL 598
           +  F+   L          L  +       ++   L  +A    K     + V ++LM L
Sbjct: 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGL 601

Query: 599 QGSQMETDDPTT--SYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ-LKPDVTITSAD 655
               +E  D       +  A + L   LG+ F  Y+    P LL++   +   V+IT+  
Sbjct: 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVG 661

Query: 656 SDNEIEDSDDDSM-----ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI 710
              +I +S ++         + +  + I    +  E K    ++    A  +   F P++
Sbjct: 662 FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL 721

Query: 711 DQVAPTLVPLLKFYFH----------EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESY 760
           + +    V                   +V +A + A   ++       E  L P     Y
Sbjct: 722 NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEA-LFP-----Y 775

Query: 761 VKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISG-----PLLDEGQVRSIVDEI 815
           V  +  FI     +      +     + +  + +   +           +  V   +   
Sbjct: 776 VGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRT 834

Query: 816 KQVITASSSRKRERAERAKAE 836
           +      S   ++ A  A+ +
Sbjct: 835 RS-GQLFSQATKDTARWAREQ 854
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1012
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 100.0
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.93
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.93
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.9
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.81
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.79
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.79
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.79
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.78
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.75
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.75
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.69
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.26
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.13
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.08
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.98
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.11
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.9
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 96.91
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 96.24
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.92
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.84
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.13
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 92.66
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 91.21
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 89.16
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=505.83  Aligned_cols=805  Identities=18%  Similarity=0.225  Sum_probs=603.4

Q ss_pred             HCCCHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             099906---899999993399938879999999886512924899999999806--999779998999999750358887
Q 001791           17 LGPDSA---PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSF   91 (1012)
Q Consensus        17 ~~~d~~---~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~   91 (1012)
                      |.+|.+   ++.++|+.++|||+++|++|+++|+++.+ .|+. ..+|..++.+  +.+..+|++|+++|||.+..+   
T Consensus         3 ~~p~~~~l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~-~p~~-~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~---   77 (888)
T d1qbkb_           3 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH---   77 (888)
T ss_dssp             SHHHHTTHHHHHHHHTTCCHHHHHHHHHHTTSTTTSTT-STTT-TTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-CCCH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH---
T ss_conf             99986999999999997639799999999999999773-9989-999999997457999899999999999999870---


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             45578987899999999899951522769999999999998421699992027999999502998777899999999936
Q 001791           92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS  171 (1012)
Q Consensus        92 ~w~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~  171 (1012)
                       |..++++.++.||+.+++++.+ +++.+|+.++.+++.+++.+.+ +.||++++.|.+.+.++++..+++++.+++.++
T Consensus        78 -w~~~~~~~~~~Ik~~ll~~l~~-~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~  154 (888)
T d1qbkb_          78 -FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC  154 (888)
T ss_dssp             -TTCSTTTCCHHHHHHHTTGGGC-CCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHH
T ss_pred             -HCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             -0239999999999999999829-9889999999999999987182-112999999999867999899999999999999


Q ss_pred             HHHHHHC-----CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf             6675220-----00099999999985369999589999999999999830691128679746999999999998369967
Q 001791          172 QYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA  246 (1012)
Q Consensus       172 ~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~  246 (1012)
                      +.....+     ....+.+++.+.+++.++ ++.+|..|++++..++....     ..+...++.+++.+.....+++++
T Consensus       155 e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~-~~~vr~~al~~l~~~~~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~  228 (888)
T d1qbkb_         155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRT-----QALMLHIDSFTENLFALAGDEEPE  228 (888)
T ss_dssp             GGGHHHHHTC---CCSTTTTHHHHTGGGSS-SSCSSSTTTHHHHGGGGCCC-----STTCSHHHHCSHHHHTTSSCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             986887607788879999999999986388-88999999998777887403-----889999999999888760793067


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHH
Q ss_conf             89999999999872113989994999999999964268753578999999999998721015312201434699999999
Q 001791          247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL  326 (1012)
Q Consensus       247 ~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l  326 (1012)
                      +|..++++|..+++.+++.+.+++..++++++...  .+.++++|..|+++|..+++....    .....++++.+++.+
T Consensus       229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~--~~~~e~v~~~a~ef~~~~~e~~~~----~~~~~~~l~~l~~~l  302 (888)
T d1qbkb_         229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRT--QDQDENVALEACEFWLTLAEQPIC----KDVLVRHLPKLIPVL  302 (888)
T ss_dssp             STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTT--TSSCHHHHHHHHHHHCCCCSGGGG----TTTTTTSTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf             79999999998998767888998887899999862--898689999889999999971645----899999999999999


Q ss_pred             HHHHCCCCCC--------CCCC--------------------------------C---CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             9962567998--------4545--------------------------------7---8998755467761106999999
Q 001791          327 MSMLLDIEDD--------PLWH--------------------------------S---AETEDEDAGESSNYSVGQECLD  363 (1012)
Q Consensus       327 ~~~l~~~~~~--------~~~~--------------------------------~---~~~~~ed~~~~~~~~~a~~~l~  363 (1012)
                      ...+.+.+.+        ..+.                                .   ...+++...+++.++++..+++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~  382 (888)
T d1qbkb_         303 VNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALD  382 (888)
T ss_dssp             TTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHST
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98742126889988554665442142577778899999999987401112102310344544300113369999999876


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf             99977299743477887798842798965899999999999933389999829999999984179988659999999999
Q 001791          364 RLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIG  443 (1012)
Q Consensus       364 ~l~~~~~~~~~~~~il~~l~~~l~s~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~  443 (1012)
                      .++..++ +.+++.+++.+.+.+.+++|+.|++|+.++|.+++++.+.+.++++++++.++..++|+++.||.+++|+++
T Consensus       383 ~l~~~~~-~~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~  461 (888)
T d1qbkb_         383 VLANVYR-DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLS  461 (888)
T ss_dssp             TTTTTCC-SSSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             6765129-999999999988751220568999999986435555787742120355679998426998999999999999


Q ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             86643205588632441589999513799995799999999999860189654337479999999998623875499999
Q 001791          444 QLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGA  523 (1012)
Q Consensus       444 ~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a  523 (1012)
                      +++++..+.....+...+++.++..+.| ++++|+.+||.++..+++..+. .+.||++.+++.+...+.......+..+
T Consensus       462 ~~~~~~~~~~~~~~~~~~l~~ll~~l~d-~~~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~  539 (888)
T d1qbkb_         462 RYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLIL  539 (888)
T ss_dssp             HTHHHHHSSCHHHHTTTHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999866541565545558999988428-9878999899999999987553-1135799999999999860037799999


Q ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999827645--854744568899999610663210025799999999996417332255499999999998358
Q 001791          524 LTALASVADSSQEHF--QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS  601 (1012)
Q Consensus       524 ~~~l~~l~~~~~~~~--~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~  601 (1012)
                      +.+++.++...+..+  .+|++.+++.+...+....+++  .....+++|++.++...+ +.+.|+...+++.+..+.. 
T Consensus       540 ~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~le~l~~i~~~~~-~~~~~~~~~~~~~~~~~l~-  615 (888)
T d1qbkb_         540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED--KDLFPLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQ-  615 (888)
T ss_dssp             HHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC--TTHHHHHHHHHHHHHHST-TTTHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-
T ss_conf             999999998623101336799999999999997512106--889999999999999867-8776569999999998899-


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEC
Q ss_conf             89999702379999999999880378423136635999997045998222478987654578875410220289035530
Q 001791          602 QMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIK  681 (1012)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  681 (1012)
                               ...    .                  ..+......+.               .+..+.+            
T Consensus       616 ---------~~l----~------------------~~~~~~~~~~~---------------~~~~~~~------------  637 (888)
T d1qbkb_         616 ---------KTL----A------------------QAMLNNAQPDQ---------------YEAPDKD------------  637 (888)
T ss_dssp             ---------HHH----H------------------HHHHHHHCTTT---------------SCCCCTH------------
T ss_pred             ---------HHH----H------------------HHHHHHCCCCC---------------CCCHHHH------------
T ss_conf             ---------899----9------------------99987416201---------------1000688------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf             2169989999999999999940015331998--89876002476589779999998599999999999980899999979
Q 001791          682 TSVLEEKATACNMLCCYADELKEGFFPWIDQ--VAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES  759 (1012)
Q Consensus       682 ~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~--~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  759 (1012)
                           -...++.+++.++..++..+.+++..  +++.+...+.+. +.++|+.|+.+++.+...+             +.
T Consensus       638 -----~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~-------------~~  698 (888)
T d1qbkb_         638 -----FMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKAC-------------FQ  698 (888)
T ss_dssp             -----HHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC-------------GG
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH-------------HH
T ss_conf             -----9999999988899873056666665856999999996799-7689999999988778751-------------68


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999998109919999999999999999839999998899999999999998897699999973066899
Q 001791          760 YVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFD  839 (1012)
Q Consensus       760 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d  839 (1012)
                      .+.+.++.+++.+.+.+.++ ...++..++.+++++....|..+ .++++.+++.+..++.+.              +  
T Consensus       699 ~~~~~l~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~-~py~~~il~~L~~il~~~--------------~--  760 (888)
T d1qbkb_         699 HVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMGIEM-QPYIPMVLHQLVEIINRP--------------N--  760 (888)
T ss_dssp             GTGGGHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGG-GGGSHHHHHHHHHHHTCT--------------T--
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC--------------C--
T ss_conf             77877999999999873867-78999999999999999877986-505999999999987699--------------8--


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78756745544659999999999999999980003135498988757542159999989999999799998772165675
Q 001791          840 AEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK  919 (1012)
Q Consensus       840 ~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  919 (1012)
                                  ....++++++.++|.++..+|+.+.|+++.+++..+..+....+..++..++..+..+++..+..+.+
T Consensus       761 ------------~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~  828 (888)
T d1qbkb_         761 ------------TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQ  828 (888)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred             ------------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf             ------------63789999999999999879798886499999999997263798189999999999999978498887


Q ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf             2574899999553699935888878999999853177
Q 001791          920 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS  956 (1012)
Q Consensus       920 ~~~~l~~~~~~~l~~~~~~vr~~a~~~lg~l~~~~~~  956 (1012)
                      ++..++..+.+ ..+..++++......|+.+....|+
T Consensus       829 ~l~~~~~~i~~-~~~~~~~~~~~~~~~l~~~~~~~~~  864 (888)
T d1qbkb_         829 DFIFFCDAVAS-WINPKDDLRDMFCKILHGFKNQVGD  864 (888)
T ss_dssp             GHHHHHHHHTT-CSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf             79999999970-3799789999999999999987692
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure