Citrus Sinensis ID: 001804
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | 2.2.26 [Sep-21-2011] | |||||||
| Q9UI26 | 975 | Importin-11 OS=Homo sapie | yes | no | 0.936 | 0.971 | 0.277 | 1e-117 | |
| Q8K2V6 | 975 | Importin-11 OS=Mus muscul | yes | no | 0.934 | 0.969 | 0.283 | 1e-116 | |
| O94545 | 983 | Importin beta-like protei | yes | no | 0.908 | 0.933 | 0.221 | 3e-40 | |
| Q02932 | 1032 | Importin beta-like protei | yes | no | 0.914 | 0.896 | 0.231 | 2e-37 | |
| Q7SZC2 | 971 | Exportin-2 OS=Danio rerio | no | no | 0.186 | 0.194 | 0.263 | 9e-11 | |
| Q6GMY9 | 971 | Exportin-2 OS=Xenopus lae | N/A | no | 0.146 | 0.152 | 0.267 | 1e-09 | |
| Q04175 | 944 | Importin beta SMX1 OS=Sac | no | no | 0.106 | 0.114 | 0.327 | 1e-09 | |
| P55060 | 971 | Exportin-2 OS=Homo sapien | no | no | 0.146 | 0.152 | 0.285 | 5e-09 | |
| Q9ERK4 | 971 | Exportin-2 OS=Mus musculu | no | no | 0.146 | 0.152 | 0.285 | 6e-09 | |
| A5D785 | 971 | Exportin-2 OS=Bos taurus | no | no | 0.146 | 0.152 | 0.285 | 6e-09 |
| >sp|Q9UI26|IPO11_HUMAN Importin-11 OS=Homo sapiens GN=IPO11 PE=1 SV=1 | Back alignment and function desciption |
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Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust.
Identities = 283/1018 (27%), Positives = 523/1018 (51%), Gaps = 71/1018 (6%)
Query: 10 AIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYF 69
+ +L + S+D ++ KPAE L Q E++PGF S L+ + T L ++VR +A +YF
Sbjct: 9 VVLQVLTQATSQDTAVLKPAEEQLKQWETQPGFYSVLLNIFTNHTL--DINVRWLAVLYF 66
Query: 70 KNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREW 129
K+ I+RYWR R +S EEK LR L+T+ E NQ+A +AVLI+K+AR D PR+W
Sbjct: 67 KHGIDRYWR-RVAPHALSEEEKTTLRAGLITNFNEPINQIATQIAVLIAKVARLDCPRQW 125
Query: 130 PQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSHLFDYSWHLW 189
P+L L + ++ D L HR + + K L++KRL AD++ F +++S +++++ LW
Sbjct: 126 PELIPTLIESVKVQDDLRQHRALLTFYHVTKTLASKRLAADRKLFYDLASGIYNFACSLW 185
Query: 190 QSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDAKCIQ 249
T L S+ +A ++LE R LL LK++R+L ++GF
Sbjct: 186 NHHTDTFLQEVSSGNEAAILSSLE-----------RTLLSLKVLRKLTVNGF-------- 226
Query: 250 EVRPVKEVSPL-----LLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRH 304
V P K + + + ++ FL S + + ++ KVL+ +H
Sbjct: 227 -VEPHKNMEVMGFLHGIFERLKQFLECSRSIGTDN-VCRDRLEKTIILFTKVLLDFLDQH 284
Query: 305 PYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVM 364
P++F ++ ++F ++ + + +FE+F++QCM L+K +++ YKPS
Sbjct: 285 PFSFTP--LIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLIKMIVKNYAYKPS--KNFE 340
Query: 365 DDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAF 424
D S TLE K ++ ++ + C L+ YF+LT +L W ++PE F
Sbjct: 341 DSSPETLEAHKIKMAFFTYPTLTEI---------CRRLVSHYFLLTEEELTMWEEDPEGF 391
Query: 425 H-HEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLL 483
E W LRPC E L+I +F ++Q L PV++ ++Q + G T+V ++ LL
Sbjct: 392 TVEETGGDSWKYSLRPCTEVLFIDIFHEYNQTLTPVLLEMMQ-TLQG-PTNVEDMN-ALL 448
Query: 484 LKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EI 542
+KDA Y A YEL + + F WF L +L H + R+V ++GQW+S +
Sbjct: 449 IKDAVYNAVGLAAYELFDSVDFDQWFKNQLLPELQVIHNRYKPLRRRVIWLIGQWISVKF 508
Query: 543 KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLV 602
K D + +Y A+ LL D+DL VR+ +L ++D F F L + F+L+
Sbjct: 509 KSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLL 568
Query: 603 EEVQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALR 661
++V E D+K+ VL+++S +I V+ ++ PY LVQ+ +W++S ++L+ +L L
Sbjct: 569 QQVTECDTKMHVLHVLSCVIERVNMQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLI 628
Query: 662 NFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAY 721
+ V LG S N Y LLP+++ D++ P + LLED + LW T+ ++P + P+LL
Sbjct: 629 HLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCITPELLRI 688
Query: 722 FPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLII 781
F + ++E S ++L+ II GYI L T+FL +A + + ++ + +G + +
Sbjct: 689 FQNMSPLLELSSENLRTCFKIINGYIFLSSTEFLQTYAVGLCQSFCELLKEITTEGQVQV 748
Query: 782 LPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNA 841
L V++ ++ PI P + Q ++ G + E V ++ ++ R+L+ N
Sbjct: 749 LKVVENALKVNPILGPQM----FQPILPYVFKGIIEGE-RYPVVMSTYLGVMGRVLLQNT 803
Query: 842 NYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSVQKKIFALALSIILTM 901
++ + L +E + + + +L +++++W+D++D+++ +++ + + L
Sbjct: 804 SFFSSLLNEMAHKFNQEM------DQLLGNMIEMWVDRMDNITQPERRKLSALALLSLLP 857
Query: 902 RLPQVLDKLDQILSVCTSVILGGNDDLAEEESSG--------DNMSSSKYHGEGTIPSKE 953
V+ D+ + + G +D + E+ +G ++ K + P+++
Sbjct: 858 SDNSVIQ--DKFCGIINISVEGLHDVMTEDPETGTYKDCMLMSHLEEPKVTEDEEPPTEQ 915
Query: 954 LRRRQ-IKFSDPVNQLSLENSVRENLQTCATLHGD-SFNSTMSRMHSSALMQLKQALK 1009
+R++ + DPV+ +SL+ + E L+ + G+ F S M + + + QL++ L+
Sbjct: 916 DKRKKMLALKDPVHTVSLQQFIYEKLKAQQEMLGEQGFQSLMETVDTEIVTQLQEFLQ 973
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Functions in nuclear protein import as nuclear transport receptor. Serves as receptor for nuclear localization signals (NLS) in cargo substrates. Is thought to mediate docking of the importin/substrate complex to the nuclear pore complex (NPC) through binding to nucleoporin and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to the importin, the importin/substrate complex dissociates and importin is re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus (By similarity). Mediates the nuclear import of UBE2E3, and of RPL12. Homo sapiens (taxid: 9606) |
| >sp|Q8K2V6|IPO11_MOUSE Importin-11 OS=Mus musculus GN=Ipo11 PE=1 SV=1 | Back alignment and function description |
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| >sp|O94545|KA113_SCHPO Importin beta-like protein kap113 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap113 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q02932|KA120_YEAST Importin beta-like protein KAP120 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP120 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q7SZC2|XPO2_DANRE Exportin-2 OS=Danio rerio GN=cse1l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6GMY9|XPO2_XENLA Exportin-2 OS=Xenopus laevis GN=cse1l PE=2 SV=1 | Back alignment and function description |
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| >sp|Q04175|SXM1_YEAST Importin beta SMX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SXM1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P55060|XPO2_HUMAN Exportin-2 OS=Homo sapiens GN=CSE1L PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9ERK4|XPO2_MOUSE Exportin-2 OS=Mus musculus GN=Cse1l PE=2 SV=1 | Back alignment and function description |
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| >sp|A5D785|XPO2_BOVIN Exportin-2 OS=Bos taurus GN=CSE1L PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | ||||||
| 359481171 | 1011 | PREDICTED: importin-11-like [Vitis vinif | 0.999 | 0.999 | 0.831 | 0.0 | |
| 255579314 | 1011 | importin, putative [Ricinus communis] gi | 0.999 | 0.999 | 0.831 | 0.0 | |
| 356568126 | 1009 | PREDICTED: importin-11-like [Glycine max | 0.997 | 0.999 | 0.809 | 0.0 | |
| 297833648 | 1010 | hypothetical protein ARALYDRAFT_317700 [ | 0.998 | 0.999 | 0.803 | 0.0 | |
| 356523330 | 1015 | PREDICTED: importin-11-like [Glycine max | 0.997 | 0.993 | 0.806 | 0.0 | |
| 240255306 | 1010 | armadillo/beta-catenin-like repeat-conta | 0.998 | 0.999 | 0.800 | 0.0 | |
| 449456200 | 1008 | PREDICTED: importin-11-like [Cucumis sat | 0.994 | 0.997 | 0.753 | 0.0 | |
| 224140453 | 962 | predicted protein [Populus trichocarpa] | 0.928 | 0.976 | 0.749 | 0.0 | |
| 449496346 | 1009 | PREDICTED: LOW QUALITY PROTEIN: importin | 0.994 | 0.996 | 0.738 | 0.0 | |
| 357121385 | 1016 | PREDICTED: importin-11-like [Brachypodiu | 0.997 | 0.992 | 0.638 | 0.0 |
| >gi|359481171|ref|XP_002262626.2| PREDICTED: importin-11-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1746 bits (4522), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/1010 (83%), Positives = 933/1010 (92%)
Query: 1 MALSASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVD 60
MALSASDLPA+Y+LL NS+S DES+RKPAEAALSQSESRPGFCSCLMEVITAKDLA+QVD
Sbjct: 1 MALSASDLPAMYSLLTNSLSADESVRKPAEAALSQSESRPGFCSCLMEVITAKDLAAQVD 60
Query: 61 VRLMASVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKI 120
VRLMASVYFKN +NRYWRNRRDS GISNEEK+HLRQKLL HLREEN Q+A MLAVLISKI
Sbjct: 61 VRLMASVYFKNGVNRYWRNRRDSSGISNEEKIHLRQKLLLHLREENYQIALMLAVLISKI 120
Query: 121 ARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSH 180
AR DYP+EWP+LFSVLAQQLQ+AD+LTSHRIFMILFRTLKELSTKRLT+DQRNFAEISSH
Sbjct: 121 ARIDYPKEWPELFSVLAQQLQSADILTSHRIFMILFRTLKELSTKRLTSDQRNFAEISSH 180
Query: 181 LFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISG 240
FDYSW LWQSDVQTIL FS +AQ +S+A EQ +LYL CERWLLCLKIIRQLIISG
Sbjct: 181 FFDYSWRLWQSDVQTILRDFSALAQCISSDASEQHQGDLYLICERWLLCLKIIRQLIISG 240
Query: 241 FPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAI 300
FPSDAKC+QEVRPVKEVSP+LLNAIQSFL YYSSFQ PKFW+F KRACTKLMKVLVA
Sbjct: 241 FPSDAKCVQEVRPVKEVSPVLLNAIQSFLTYYSSFQTQCPKFWDFIKRACTKLMKVLVAF 300
Query: 301 QGRHPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLT 360
Q RHPY+FGD+CVLP V+DFCLNKI+ PE DI SFEQFLIQCMV+VKS+LECKEYKPSLT
Sbjct: 301 QTRHPYSFGDECVLPPVMDFCLNKISDPEHDILSFEQFLIQCMVMVKSILECKEYKPSLT 360
Query: 361 GRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQN 420
GRV+D++ VT+EQMKKNIS++VGGV++SLLP ERI+LLCN+LIRRYFVL+ASDLEEWYQN
Sbjct: 361 GRVIDENRVTIEQMKKNISSIVGGVLTSLLPNERIVLLCNILIRRYFVLSASDLEEWYQN 420
Query: 421 PEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITP 480
PE+FHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAM GC TSVTEITP
Sbjct: 421 PESFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMRGCPTSVTEITP 480
Query: 481 GLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS 540
GLLLKDAAY AAA+VYYELSNYLSFKDWFNGALSL+LSNDHPNM IIHRKVA+ILGQWVS
Sbjct: 481 GLLLKDAAYSAAAHVYYELSNYLSFKDWFNGALSLELSNDHPNMRIIHRKVALILGQWVS 540
Query: 541 EIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFK 600
EIKDDTKR+VYCALI+LL +KDLSVRLAACRSLC HIEDANFSE+ FTDLLPICWD CFK
Sbjct: 541 EIKDDTKRSVYCALIRLLQEKDLSVRLAACRSLCFHIEDANFSEQGFTDLLPICWDLCFK 600
Query: 601 LVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIAL 660
L+EEVQEFDSKVQVLNLIS LIG +EVI +A+KLVQFFQKVWEESSGESLLQIQLLIAL
Sbjct: 601 LIEEVQEFDSKVQVLNLISTLIGRGNEVITFADKLVQFFQKVWEESSGESLLQIQLLIAL 660
Query: 661 RNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLA 720
R+FV ALG+QS CY+++LPIL++GIDINSPDELNLLEDS+ LWEA +S+AP MVPQLLA
Sbjct: 661 RSFVTALGFQSPICYNLILPILQKGIDINSPDELNLLEDSLQLWEAILSNAPSMVPQLLA 720
Query: 721 YFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLI 780
YFPCLVE++ERSFDHLQVA++I EGYIILGGT+FL+MHAS VAKLLDL+VGNVND+GLL
Sbjct: 721 YFPCLVEVIERSFDHLQVAVHITEGYIILGGTEFLSMHASSVAKLLDLIVGNVNDRGLLS 780
Query: 781 ILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMN 840
LP ID+LIQCFP++VPPLIS +LQKL+VICL+GGDDH+PSKTAVKAS+AAILARILVMN
Sbjct: 781 TLPAIDILIQCFPMEVPPLISSALQKLVVICLTGGDDHDPSKTAVKASAAAILARILVMN 840
Query: 841 ANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSVQKKIFALALSIILT 900
+NYLAQLTS+PSL LLLQ+AG P EEN+LL L+DIWL+KVD+ SS Q+K+F LALSIILT
Sbjct: 841 SNYLAQLTSQPSLMLLLQKAGFPAEENILLCLIDIWLEKVDNASSAQRKMFGLALSIILT 900
Query: 901 MRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSKYHGEGTIPSKELRRRQIK 960
+RLPQVLDKLDQILSVCTSVILGGNDDL EEESSGDNMSSS+ EG +PSKE +RRQIK
Sbjct: 901 LRLPQVLDKLDQILSVCTSVILGGNDDLTEEESSGDNMSSSRSQNEGPVPSKEFKRRQIK 960
Query: 961 FSDPVNQLSLENSVRENLQTCATLHGDSFNSTMSRMHSSALMQLKQALKM 1010
FSDP+NQLSLE SVR+NLQTCA LHG+SFNS + RMH +A QLKQALKM
Sbjct: 961 FSDPINQLSLETSVRDNLQTCAALHGESFNSAIGRMHPAAFAQLKQALKM 1010
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579314|ref|XP_002530502.1| importin, putative [Ricinus communis] gi|223529959|gb|EEF31886.1| importin, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356568126|ref|XP_003552264.1| PREDICTED: importin-11-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297833648|ref|XP_002884706.1| hypothetical protein ARALYDRAFT_317700 [Arabidopsis lyrata subsp. lyrata] gi|297330546|gb|EFH60965.1| hypothetical protein ARALYDRAFT_317700 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356523330|ref|XP_003530293.1| PREDICTED: importin-11-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|240255306|ref|NP_187508.5| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|332641181|gb|AEE74702.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|449456200|ref|XP_004145838.1| PREDICTED: importin-11-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224140453|ref|XP_002323597.1| predicted protein [Populus trichocarpa] gi|222868227|gb|EEF05358.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449496346|ref|XP_004160110.1| PREDICTED: LOW QUALITY PROTEIN: importin-11-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357121385|ref|XP_003562401.1| PREDICTED: importin-11-like [Brachypodium distachyon] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1011 | ||||||
| TAIR|locus:2097658 | 1010 | AT3G08960 "AT3G08960" [Arabido | 0.998 | 0.999 | 0.785 | 0.0 | |
| UNIPROTKB|F1PTU2 | 975 | IPO11 "Uncharacterized protein | 0.677 | 0.702 | 0.271 | 6.9e-115 | |
| MGI|MGI:2442377 | 975 | Ipo11 "importin 11" [Mus muscu | 0.679 | 0.704 | 0.270 | 8.7e-115 | |
| UNIPROTKB|Q9UI26 | 975 | IPO11 "Importin-11" [Homo sapi | 0.677 | 0.702 | 0.271 | 1.8e-114 | |
| UNIPROTKB|E1BYX0 | 978 | IPO11 "Uncharacterized protein | 0.742 | 0.767 | 0.268 | 4.8e-114 | |
| UNIPROTKB|E1BEW3 | 975 | IPO11 "Uncharacterized protein | 0.677 | 0.702 | 0.268 | 1.3e-113 | |
| ZFIN|ZDB-GENE-040711-1 | 975 | zgc:91897 "zgc:91897" [Danio r | 0.680 | 0.705 | 0.271 | 4.3e-113 | |
| UNIPROTKB|E1C0J5 | 977 | IPO11 "Uncharacterized protein | 0.677 | 0.701 | 0.275 | 1.6e-111 | |
| UNIPROTKB|E1BYX6 | 978 | IPO11 "Uncharacterized protein | 0.677 | 0.700 | 0.275 | 7.1e-111 | |
| UNIPROTKB|F8WDV0 | 863 | IPO11 "Importin-11" [Homo sapi | 0.571 | 0.669 | 0.280 | 2.5e-108 |
| TAIR|locus:2097658 AT3G08960 "AT3G08960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4146 (1464.5 bits), Expect = 0., P = 0.
Identities = 793/1010 (78%), Positives = 885/1010 (87%)
Query: 1 MALSASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVD 60
MALSASDLPA+YTLLANSMS DE++R+PAEAALS SESRPGFCSCLMEVI +KDL S VD
Sbjct: 1 MALSASDLPAMYTLLANSMSGDETVRRPAEAALSLSESRPGFCSCLMEVIASKDLVSHVD 60
Query: 61 VRLMASVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKI 120
VRLMASVYFKNSINR+W++RR+S +SNEEK HLRQKLL+HLREEN Q+A+MLAVLISKI
Sbjct: 61 VRLMASVYFKNSINRHWKSRRNSWSMSNEEKSHLRQKLLSHLREENYQIAEMLAVLISKI 120
Query: 121 ARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSH 180
ARFDYPREWP LFSVLAQQL +ADVL SHRIF+ILFRTLKELSTKRLTADQ+ FAEISS
Sbjct: 121 ARFDYPREWPDLFSVLAQQLHSADVLASHRIFLILFRTLKELSTKRLTADQKTFAEISSQ 180
Query: 181 LFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISG 240
FD+SWHLWQ+DVQTILHGFST+ Q+Y SN+ EQ HDEL+LTCERW LCLKI+RQLIISG
Sbjct: 181 FFDFSWHLWQTDVQTILHGFSTMVQSYGSNSAEQHHDELFLTCERWFLCLKIVRQLIISG 240
Query: 241 FPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAI 300
F SDA IQE++PVKEVSP LLNA QSFLPYYSSFQ PKFWEF K+AC KLMKVL AI
Sbjct: 241 FLSDANNIQEIQPVKEVSPALLNAAQSFLPYYSSFQNRDPKFWEFVKKACVKLMKVLGAI 300
Query: 301 QGRHPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLT 360
Q RHP++FGDKC LP VVDFCLNKIT PE + FE F IQCMV+VKSVLECKEYKPS T
Sbjct: 301 QSRHPFSFGDKCALPVVVDFCLNKITDPEQALLPFEDFFIQCMVMVKSVLECKEYKPSRT 360
Query: 361 GRVMDDSGVTLEQMKKNISNXXXXXXXXXXPKERIILLCNVLIRRYFVLTASDLEEWYQN 420
GRVMDD+G T EQ KKN SN P ERI+LLCNVL+RRYFVLTASDLEEWYQN
Sbjct: 361 GRVMDDNGDTFEQRKKNASNTVGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQN 420
Query: 421 PEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITP 480
PE+FHHEQDM+QWTEKLRPCAEALY+VLFEN+SQLLGP+VVSILQEAMN C SVTEITP
Sbjct: 421 PESFHHEQDMIQWTEKLRPCAEALYMVLFENYSQLLGPIVVSILQEAMNNCPPSVTEITP 480
Query: 481 GLLLKDXXXXXXXXXXXELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS 540
LLLKD ELSNYL+F+DWFNGALSL+LSNDHPN IIHRKVA+ILG WVS
Sbjct: 481 ALLLKDAAYAATAYVYYELSNYLNFRDWFNGALSLELSNDHPNRRIIHRKVAMILGHWVS 540
Query: 541 EIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFK 600
EIKDDTKRAVYCALIKLL D DL+V+LAA RSLC H+EDANFSE+ F DLLPICWDSCFK
Sbjct: 541 EIKDDTKRAVYCALIKLLQDNDLAVKLAASRSLCLHVEDANFSEQSFLDLLPICWDSCFK 600
Query: 601 LVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIAL 660
+VE VQEFDSKVQ+LNLIS LIGHVSEVIPYA KLVQFFQKVWEESSGESLLQIQLL+AL
Sbjct: 601 MVEVVQEFDSKVQILNLISTLIGHVSEVIPYAQKLVQFFQKVWEESSGESLLQIQLLVAL 660
Query: 661 RNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLA 720
RNFV+ALGYQS CYS+LLPIL++GIDINSPD LNLLEDSM LWE T+S+AP+MVPQLLA
Sbjct: 661 RNFVIALGYQSPICYSILLPILQKGIDINSPDSLNLLEDSMALWETTLSYAPMMVPQLLA 720
Query: 721 YFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLI 780
FP +VEI+ERSFDHLQVA++I++ YIIL G +FLNMHAS VAK+LDL+VGNVNDKGLL
Sbjct: 721 LFPYMVEIIERSFDHLQVAVSIMDSYIILDGGEFLNMHASSVAKILDLIVGNVNDKGLLS 780
Query: 781 ILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMN 840
ILPVID+L+QCFP++VPPLIS LQKL++ICLSGGDD +PSKTAVK SSAAILARILVMN
Sbjct: 781 ILPVIDILVQCFPVEVPPLISSCLQKLVIICLSGGDDRDPSKTAVKVSSAAILARILVMN 840
Query: 841 ANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSVQKKIFALALSIILT 900
YLAQLTS+ SLS+LLQQAG+P+E+N+LL L+DIWLDKVDH S +Q+K F LALSIILT
Sbjct: 841 TTYLAQLTSDSSLSVLLQQAGVPVEDNILLCLIDIWLDKVDHASPMQQKTFGLALSIILT 900
Query: 901 MRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSKYHGEGTIPSKELRRRQIK 960
+R+PQVLDKLD ILS CTSVILG N DL EEESSGD MSSS+ GE T PSKELR+ QIK
Sbjct: 901 LRMPQVLDKLDLILSTCTSVILGENKDLTEEESSGD-MSSSRSQGEETPPSKELRKSQIK 959
Query: 961 FSDPVNQLSLENSVRENLQTCATLHGDSFNSTMSRMHSSALMQLKQALKM 1010
SDP+ Q+SLENS RENLQTC+TLHGD+FNS +SRMH SAL Q+KQALK+
Sbjct: 960 VSDPIYQMSLENSTRENLQTCSTLHGDAFNSAISRMHPSALAQVKQALKL 1009
|
|
| UNIPROTKB|F1PTU2 IPO11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2442377 Ipo11 "importin 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9UI26 IPO11 "Importin-11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BYX0 IPO11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BEW3 IPO11 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040711-1 zgc:91897 "zgc:91897" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C0J5 IPO11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BYX6 IPO11 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F8WDV0 IPO11 "Importin-11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1011 | |||
| COG5657 | 947 | COG5657, CSE1, CAS/CSE protein involved in chromos | 3e-31 | |
| pfam03810 | 71 | pfam03810, IBN_N, Importin-beta N-terminal domain | 4e-11 | |
| smart00913 | 67 | smart00913, IBN_N, Importin-beta N-terminal domain | 4e-10 | |
| COG5656 | 970 | COG5656, SXM1, Importin, protein involved in nucle | 2e-08 | |
| COG5215 | 858 | COG5215, KAP95, Karyopherin (importin) beta [Intra | 6e-04 |
| >gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-31
Identities = 159/811 (19%), Positives = 298/811 (36%), Gaps = 101/811 (12%)
Query: 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMA 65
DLP + L + S D K AE L Q E + GF L+ + + + +R A
Sbjct: 2 EDLPVVK-QLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINL--SAFNSMSLRWAA 58
Query: 66 SVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDY 125
+ FKN I+++WR I +E V +R +L + + +NQ+ A+ +S+IAR D+
Sbjct: 59 LIQFKNYIDKHWREEN-GNSILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDF 117
Query: 126 PREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSHLFDYS 185
P EWP L L L D++T+ +L K L +RL F EI+ L
Sbjct: 118 PDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRL--RRLFRSDALFLEIAPVL---- 171
Query: 186 WHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245
+IL F + + ++ ++ DE L+ + +CLK+IR+ GF
Sbjct: 172 --------LSILCPF--LFSSAYFWSMSENLDESLLSLFQ--VCLKLIRRYYDLGF---- 215
Query: 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHP 305
+++ + + F+ F K ++ C + V ++G
Sbjct: 216 ---------QDIPEFFEDNLDKFM---EHFCKLLSYSNPVLQKDCLE-DCVYFKLKGSIC 262
Query: 306 YTFGD-KCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVM 364
F P V+ + + F+ L+ ++ ++ +
Sbjct: 263 EIFNLYTTKYPEVITYLIY-------------DFVEIVWNLLTTITRPYIRDYLVSKSLT 309
Query: 365 DDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAF 424
V ++K V S + + I L ++LI +L DLEEW +P +
Sbjct: 310 VLINVIKYPIRKTAE------VLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEY 363
Query: 425 HHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLL 484
EQ + +RPC E LF+ ++ +++++ + E
Sbjct: 364 IREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVIESEAT-TPNILDE----ARQ 418
Query: 485 KDAAYGAAAYVYYELSNYLSFKDWFNGALSLDL--SNDHPNMHIIHRKVAIILGQWVSEI 542
AAY + ++ + F + + DL N+ ++ I+ ++A IL
Sbjct: 419 LFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQ-- 476
Query: 543 KDDTKRAVYCALIKLLMDKDLSVRLAACRSLC----------SHIEDANFSERDFTDLLP 592
+ K L + AC + +D NFS LL
Sbjct: 477 --LDSS--ELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVCSKIGLLE 532
Query: 593 ICWDSCFKLVEEVQEFDSKVQVLNLIS-ILIGHVSEVIPYANKLVQFFQKVWEESSGESL 651
L+ + + +L LIS I+I + P ++++Q + E ++
Sbjct: 533 NLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPS 592
Query: 652 LQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLL-EDSMLLWEATISH 710
Q + AL + + +P L + P+ LL ED+ LW + +
Sbjct: 593 NP-QFAHYTFEDIGALVFLKSGMCEITIPTL---VLALVPEFPVLLSEDATELW-SYVLQ 647
Query: 711 APVMVPQLLA--YFPCLVEIMERSFDH---LQVAINIIEGYIILGGTDFLNMHASCVAK- 764
++P+ + P +V+I+ + L + I++ Y +L + +
Sbjct: 648 LLSILPEHFSGDVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILTTGYIFKSSGF 707
Query: 765 ------LLDLVVGNVNDKGLLIILPVIDMLI 789
L L+ +D + L V++ L
Sbjct: 708 QPVLGILQYLLGSEPHDALCFLNLTVVETLY 738
|
Length = 947 |
| >gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1011 | |||
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 100.0 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 100.0 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 100.0 | |
| COG5657 | 947 | CSE1 CAS/CSE protein involved in chromosome segreg | 100.0 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 100.0 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 99.97 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 99.9 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 99.7 | |
| COG5101 | 1053 | CRM1 Importin beta-related nuclear transport recep | 99.65 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.56 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 99.36 | |
| PF03810 | 77 | IBN_N: Importin-beta N-terminal domain; InterPro: | 99.34 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.1 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.1 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.01 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 98.99 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.83 | |
| KOG2020 | 1041 | consensus Nuclear transport receptor CRM1/MSN5 (im | 98.57 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 98.24 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.08 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.07 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 98.0 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.79 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.76 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.75 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 97.68 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.45 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.3 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 97.3 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.29 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.13 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.06 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.93 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 96.85 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.73 | |
| PRK09687 | 280 | putative lyase; Provisional | 96.73 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.72 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.66 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.57 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.49 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.37 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.32 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.2 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.11 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 96.02 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.93 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.88 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.84 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 95.73 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.63 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 95.54 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 95.52 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.51 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.32 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 95.31 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.1 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.09 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 94.93 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.8 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.76 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.2 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.82 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.52 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 93.43 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 93.25 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 92.87 | |
| KOG1410 | 1082 | consensus Nuclear transport receptor RanBP16 (impo | 92.63 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 92.62 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 92.52 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 92.44 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 92.38 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 92.34 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 91.96 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 91.22 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 91.01 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 90.65 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 90.44 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 90.37 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 89.92 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 89.76 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 89.42 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 89.22 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 88.73 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 88.5 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 88.42 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.38 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 87.92 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 87.08 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 86.76 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 86.74 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 86.28 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 86.27 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 85.77 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 85.74 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 85.35 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 85.03 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 84.86 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 84.68 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 84.63 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 84.22 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 83.86 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 83.79 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 83.76 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 82.63 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 81.91 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 81.62 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 81.35 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 81.3 |
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-144 Score=1191.79 Aligned_cols=953 Identities=38% Similarity=0.581 Sum_probs=836.0
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHH
Q 001804 11 IYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEE 90 (1011)
Q Consensus 11 l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~ 90 (1011)
++++|+++.|||+.++|.||+||++||++|||+..|..|+.+.+. +.+|||+|+|||||+|+||||+ +...++++|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~--dv~vRWmAviyfKNgIdryWR~-~~~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTN--DVSVRWMAVIYFKNGIDRYWRR-NTKMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhcccc--ceeeeeehhhhHhcchhHHhhc-CCcccCCHHH
Confidence 678999999999999999999999999999999999999999985 6999999999999999999995 4457799999
Q ss_pred HHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC----CHHHHhHHHHHHHHHHHHhhccc
Q 001804 91 KVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAA----DVLTSHRIFMILFRTLKELSTKR 166 (1011)
Q Consensus 91 K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~----~~~~~~~al~~L~~v~k~~~~~r 166 (1011)
|++||.+++..+.|++++++.|+|.++++|||.|||.+||+|+|+|++.+++. |...++|.|.++++|+|.++++|
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R 158 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR 158 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999875 88999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHH-HHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCCCc
Q 001804 167 LTADQRNFAEISSHLFDY-SWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245 (1011)
Q Consensus 167 l~~~~~~l~~i~~~lf~~-l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~~~ 245 (1011)
+.++|+.|++.++.++++ .+.+|.+++..+++..+ +. .+ + ++--.++++++++|++|+++++|+.++.
T Consensus 159 L~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~s----s~-----~e-a-~~LsalQ~s~~~lk~lRrlvv~G~~~P~ 227 (978)
T KOG1993|consen 159 LLADRKAFYELAPEILTILAPILWSSLTMMFLQSVS----SI-----KE-A-TLLSALQRSYLTLKVLRRLVVFGFQNPS 227 (978)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhh----cc-----hh-H-HHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999995 58888887765554433 21 11 1 2223688899999999999999999887
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhhh
Q 001804 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKI 325 (1011)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~ 325 (1011)
++. -++.+..++..-...+...+....+ ....+.++|.|.+++|++..++++||.+|+..+..+..++|+.+++
T Consensus 228 kse-~~eRl~~F~e~~~~~~~~~~s~~~~-----~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yI 301 (978)
T KOG1993|consen 228 KSE-FFERLLQFLELHQRKLLSSLSTGTQ-----SVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYI 301 (978)
T ss_pred hhh-HHHHHHHHHHHHHHHHHhhcccccc-----hhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhh
Confidence 652 1222333333222222222222111 1234567789999999999999999999997656778899999998
Q ss_pred cCC-------CCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhhcCCCHHHHHHH
Q 001804 326 TAP-------EPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILL 398 (1011)
Q Consensus 326 ~~~-------~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l 398 (1011)
.+. +++..+|++|++||++.+|.++-+..|++..+.+...+ .++.....++++..+|++.+++..+
T Consensus 302 f~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d-------~~~~~~~~a~~i~~sFl~~~rIt~l 374 (978)
T KOG1993|consen 302 FDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCD-------TKDEHLETAQKIYNSFLTDNRITNL 374 (978)
T ss_pred hcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhccc-------CccccHHHHHHHHHHhcchHHHHHH
Confidence 776 56678999999999999999988777877655554432 3444445578899999999999999
Q ss_pred HHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCC
Q 001804 399 CNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEI 478 (1011)
Q Consensus 399 ~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 478 (1011)
|+.+|.+|+.++++|+|+|.+|||+|+.|+++.+|+|++|||||+++.++++.|++.++|+++.++++..+.++|..+++
T Consensus 375 cd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~ 454 (978)
T KOG1993|consen 375 CDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTED 454 (978)
T ss_pred HHHHHHHHHhcCHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccch
Confidence 99999999999999999999999999999987779999999999999999999999999999999998887654544556
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc-cCCcchHHHHHHHHHhh
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EIKDDTKRAVYCALIKL 557 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~-~~~~~~~~~~~~~ll~~ 557 (1011)
.++...|||+|.|+|.+|+.+++.+||+.||.+.++|++...+++++++|||++|++|+|++ +++.+.++.+|.+++++
T Consensus 455 l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnL 534 (978)
T KOG1993|consen 455 LTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNL 534 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999999999999999999999999999 68889999999999999
Q ss_pred ccCC-ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHH
Q 001804 558 LMDK-DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKL 635 (1011)
Q Consensus 558 L~d~-~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L 635 (1011)
++|+ |++||++|+++++..+|||+|+++.|.||++.+...++++++.++++|+|+.++.+++++|+++++ |.||+..+
T Consensus 535 L~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~i 614 (978)
T KOG1993|consen 535 LQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTI 614 (978)
T ss_pred cCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9986 999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCC
Q 001804 636 VQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMV 715 (1011)
Q Consensus 636 ~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~ 715 (1011)
+++|+.+|+++++++++|++++.++.++|.++|..|..++++++|+|+.|+++++|+|+++.|||++||.+++.+.+.++
T Consensus 615 vq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~ 694 (978)
T KOG1993|consen 615 VQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLT 694 (978)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHhchhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCCC
Q 001804 716 PQLLAYFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQ 795 (1011)
Q Consensus 716 ~~l~~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~~ 795 (1011)
|++..|||++.++++.++++++.++.|+++|++++...|++.|+..+++.+..+++++++++...+++++|++++..|-.
T Consensus 695 p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il 774 (978)
T KOG1993|consen 695 PELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPIL 774 (978)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHH
Q 001804 796 VPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDI 875 (1011)
Q Consensus 796 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 875 (1011)
...+..++|.+++..+..+ +++| .++..|+.|+||+.+.||+.|..++.. .. +-+.....+++.
T Consensus 775 ~~~~~~~~L~~lf~~I~~~--~~yP---~~~~~yl~vvaRi~l~n~~~~msvlqt---------~~--~~d~~~~~li~~ 838 (978)
T KOG1993|consen 775 GSLLFSPLLSRLFLSIAEN--DKYP---YVMGEYLLVVARISLRNPSLFMSVLQT---------KN--TYDILIAMLIGN 838 (978)
T ss_pred HhhhcchhhHHHHHHHHhC--CCCc---hhHHHHHHHHHHHHhcChHHHHHHHHh---------hh--hHHHHHHHHHHH
Confidence 3455566777777766543 4566 689999999999999999999998743 11 123456789999
Q ss_pred HHHcCCCCCch-hhHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcCCccccccccCCCccccCC-C----C--CCC
Q 001804 876 WLDKVDHVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSK-Y----H--GEG 947 (1011)
Q Consensus 876 W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~~~-~----~--~~~ 947 (1011)
|...++++.+. +||+.++|++||+++++|.++..|++|++.|.++|.+ ++.| +.||+-.+.. + + .|+
T Consensus 839 WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~e---V~ed--~~g~~~~~~~~d~~~e~~~~~d 913 (978)
T KOG1993|consen 839 WILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSE---VMED--ANGDATDYHLNDDLSEQGVYED 913 (978)
T ss_pred HHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHH---Hhhh--ccCchHHHHhhhhhhccccCCc
Confidence 99999999999 9999999999999999999999999999999999955 4422 4454321110 1 1 122
Q ss_pred CCChHHHHHHhhhhCCCccccChHHHHHHHHHHHHHHhCcc-HHHHHhhcCHHHHHHHHHHhhcC
Q 001804 948 TIPSKELRRRQIKFSDPVNQLSLENSVRENLQTCATLHGDS-FNSTMSRMHSSALMQLKQALKMQ 1011 (1011)
Q Consensus 948 ~~~~~~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~~~~g~~-f~~~~~~~~~~~~~~l~~~l~~~ 1011 (1011)
..|.++.|+|++..+||||+|++++|+.++|+.++.++|.+ |+++|++++|++++++|.+|.+|
T Consensus 914 ~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~~~ 978 (978)
T KOG1993|consen 914 ETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLSIQ 978 (978)
T ss_pred hhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHccC
Confidence 23556888899999999999999999999999999999987 99999999999999999999875
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1011 | ||||
| 1wa5_C | 960 | Crystal Structure Of The Exportin Cse1p Complexed W | 3e-09 | ||
| 1z3h_A | 968 | The Exportin Cse1 In Its Cargo-free, Cytoplasmic St | 3e-09 |
| >pdb|1WA5|C Chain C, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 960 | Back alignment and structure |
|
| >pdb|1Z3H|A Chain A, The Exportin Cse1 In Its Cargo-free, Cytoplasmic State Length = 968 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 | Back alignment and structure |
|---|
Score = 280 bits (716), Expect = 5e-80
Identities = 131/1042 (12%), Positives = 326/1042 (31%), Gaps = 125/1042 (11%)
Query: 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMA 65
SDL + LA S+ K +E L Q E++ GF L+ VI + +L + RL
Sbjct: 2 SDLETVAKFLAESVIAS--TAKTSERNLRQLETQDGFGLTLLHVIASTNL--PLSTRLAG 57
Query: 66 SVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDY 125
+++FKN I R W + + + ++++++ + N + + IS IA D+
Sbjct: 58 ALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117
Query: 126 PREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSHLFDYS 185
P WP L S LA +L D++T+ + + K + L F EI L ++
Sbjct: 118 PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW--RPLFRSDELFLEIKLVLDVFT 175
Query: 186 WHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245
TV + +N E + L + + L+ +K+ P
Sbjct: 176 APFLNL--------LKTVDEQITAN--ENNKASLNILFDVLLVLIKLYYDFNCQDIPE-- 223
Query: 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGH--PKFWEFTKRACTKLMKVLVAIQGR 303
++ + + +L Y + + + + + + +++ R
Sbjct: 224 -------FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTR 276
Query: 304 HPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRV 363
+ FG ++ + N +T+ ++ + + + + +V +Y
Sbjct: 277 YEDVFGP--MINEFIQITWNLLTSISNQP-KYDILVSKSLSFLTAVTRIPKYF------- 326
Query: 364 MDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEA 423
+ + + +I L D+E + +P
Sbjct: 327 -----------------------EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE 363
Query: 424 FHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLL 483
+ T+ R L E + L+ + ++ ++ ++ + ++
Sbjct: 364 YIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSK---NWK 420
Query: 484 LKDAAY----------GAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAI 533
KD +N L+ D+F ++ DL++++ I+
Sbjct: 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIK 480
Query: 534 ILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCS--------HIEDANFSER 585
+ + +++ + L L + V A ++ F +
Sbjct: 481 YIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKE 540
Query: 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV-----SEVIPYA----NKLV 636
D ++ I + L+ + K+ + I V + P + +
Sbjct: 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI 600
Query: 637 QFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNL 696
+ + + S ++P + + S D
Sbjct: 601 EIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTF---LTVFSEDIQEF 657
Query: 697 LEDSMLLWEATISHAPVMVPQLLAYFPCLV-EIMERSFDHLQVAINIIEGYIILGGTDFL 755
+ + + + + + L+ + ++ +++ +I + F
Sbjct: 658 IPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFP 717
Query: 756 NMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGG 815
++ + L+ + +L + ++ + + L++ L
Sbjct: 718 DLV-PVLGIFQRLIASKAYEVHGFDLL---EHIMLLIDMNRLRPYIKQIAVLLLQRLQNS 773
Query: 816 DDHEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVD- 874
K + +++L E +++ + +
Sbjct: 774 KTERYVKKLT----VFFGLISNKLGSDFLIHFIDE-------------VQDGLFQQIWGN 816
Query: 875 IWLDKVDHVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDLAEEES 933
+ + + ++ +KI + + ++ K ++S + I+ +
Sbjct: 817 FIITTLPTIGNLLDRKIALIGVLNMVI-NGQFFQSKYPTLISSTMNSIIETASSQSIANL 875
Query: 934 SGDNMSSSKYHGEGTIPS--KELRRRQIKFSDPVNQLSLENSVR----ENLQTCATLHGD 987
D + T S +L K DP+ ++ + N VR E L + G+
Sbjct: 876 KNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGN 935
Query: 988 S-FNSTMSRMHSSALMQLKQAL 1008
+ N+ + ++ ++L Q L
Sbjct: 936 TFLNTILPQLTQENQVKLNQLL 957
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 | Back alignment and structure |
|---|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 | Back alignment and structure |
|---|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 | Back alignment and structure |
|---|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1011 | ||||
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 1e-78 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 4e-30 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 4e-25 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-23 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 7e-13 |
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 274 bits (702), Expect = 1e-78
Identities = 136/1035 (13%), Positives = 332/1035 (32%), Gaps = 111/1035 (10%)
Query: 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMA 65
SDL + LA S+ K +E L Q E++ GF L+ VI + +L + RL
Sbjct: 2 SDLETVAKFLAESVIAST--AKTSERNLRQLETQDGFGLTLLHVIASTNL--PLSTRLAG 57
Query: 66 SVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDY 125
+++FKN I R W + + + ++++++ + N + + IS IA D+
Sbjct: 58 ALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF 117
Query: 126 PREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQRNFAEISSHLFDYS 185
P WP L S LA +L D++T+ + + K F EI L ++
Sbjct: 118 PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF--RSDELFLEIKLVLDVFT 175
Query: 186 WHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245
+L A E + L + + L+ +K+ P
Sbjct: 176 APFLN-----LLKTVDEQI-----TANENNKASLNILFDVLLVLIKLYYDFNCQDIPE-- 223
Query: 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGH--PKFWEFTKRACTKLMKVLVAIQGR 303
++ + + +L Y + + + + + + +++ R
Sbjct: 224 -------FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTR 276
Query: 304 HPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRV 363
+ FG ++ + N +T+ ++ + + + + +V +Y
Sbjct: 277 YEDVFGP--MINEFIQITWNLLTSISNQ-PKYDILVSKSLSFLTAVTRIPKYF------- 326
Query: 364 MDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEA 423
+ + + +I L D+E + +P
Sbjct: 327 -----------------------EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIE 363
Query: 424 FHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLL 483
+ T+ R L E + L+ + ++ ++ ++ + ++
Sbjct: 364 YIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKD 423
Query: 484 LKDAAYGA-------AAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILG 536
L + A +N L+ D+F ++ DL++++ I+ +
Sbjct: 424 LYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIY 483
Query: 537 QWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSL---CSHIEDAN-----FSERDFT 588
+ +++ + L L + V A ++ + E F + D +
Sbjct: 484 TFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS 543
Query: 589 DLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV-----SEVIPYANKLVQFFQKVW 643
+ I + L+ + K+ + I V + P +L+ F ++
Sbjct: 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV 603
Query: 644 EESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGI-DINSPDELNLLEDSML 702
+ + L Y +L+ + + S D +
Sbjct: 604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQ 663
Query: 703 LWEATISHAPVMVPQLLAYFPCLVE-IMERSFDHLQVAINIIEGYIILGGTDFLNMHASC 761
+ + + + + L+ + ++ +++ +I + F ++
Sbjct: 664 IIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLV-PV 722
Query: 762 VAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPS 821
+ L+ + +L + ++ + + L++ L + +
Sbjct: 723 LGIFQRLIASKAYEVHGFDLL---EHIMLLIDMNRLRPYIKQIAVLLLQRL----QNSKT 775
Query: 822 KTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVD 881
+ VK + + +++L E L Q + + +
Sbjct: 776 ERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQ------------IWGNFIITTLP 823
Query: 882 HVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSS 940
+ ++ +KI + + ++ K ++S + I+ + D +
Sbjct: 824 TIGNLLDRKIALIGVLNMVIN-GQFFQSKYPTLISSTMNSIIETASSQSIANLKNDYVDL 882
Query: 941 SKYHGEGTIPS--KELRRRQIKFSDPVNQLSLENSVR----ENLQTCATLHGDS-FNSTM 993
T S +L K DP+ ++ + N VR E L + G++ N+ +
Sbjct: 883 DNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTIL 942
Query: 994 SRMHSSALMQLKQAL 1008
++ ++L Q L
Sbjct: 943 PQLTQENQVKLNQLL 957
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1011 | |||
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 100.0 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 100.0 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 100.0 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.92 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.86 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.83 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.76 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.68 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.59 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.52 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.24 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.85 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.56 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.37 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.09 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.95 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.84 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.56 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.36 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.34 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.24 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.01 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 95.89 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 95.2 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 93.59 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 88.84 |
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=0 Score=699.40 Aligned_cols=917 Identities=13% Similarity=0.166 Sum_probs=675.7
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99899999999860899455689999999742197909999999983288898989999999985010244345668889
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVG 85 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~~~ 85 (1011)
.|++++.++|+++++| +.||+||++|++|+++|||..+|++|+.+++. +.++||+|+|+|||.|+++|+.+..++.
T Consensus 2 ~d~~~l~~ll~~s~~~--~~~k~Ae~~L~~~~~~p~f~~~L~~i~~~~~~--~~~iR~~A~i~lKn~i~~~W~~~~~~~~ 77 (959)
T d1wa5c_ 2 SDLETVAKFLAESVIA--STAKTSERNLRQLETQDGFGLTLLHVIASTNL--PLSTRLAGALFFKNFIKRKWVDENGNHL 77 (959)
T ss_dssp CHHHHHHHHHHHTTSG--GGHHHHHHHHHHHHTSTTHHHHHHHHHHCTTS--CHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 7199999999878996--89999999999977099899999999835899--9999999999999999985564344579
Q ss_pred CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99779999999999698523099999999999999866189884156999999832688778958999999999985005
Q 001804 86 ISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTK 165 (1011)
Q Consensus 86 i~~e~K~~Ir~~ll~~L~~~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~~ 165 (1011)
+++++|+.||+.+++++.+++++||++++.++++|++.|||++||++++.+.+.++++|+...+++|.++++++|++...
T Consensus 78 i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~ 157 (959)
T d1wa5c_ 78 LPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL 157 (959)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998379699999999999999987684025799999999857999999999999999999998765
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 503-6677999999999999998658869989865567663104652100238899967899999999999987257998
Q 001804 166 RLT-ADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSD 244 (1011)
Q Consensus 166 rl~-~~~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~i~~~~~~~ 244 (1011)
... +.+..+..+.+.+++.+..+.... +....++.. .........+....++|+++..+..+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (959)
T d1wa5c_ 158 FRSDELFLEIKLVLDVFTAPFLNLLKTV-------DEQITANEN------NKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (959)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTTCCC--------CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 1325477679999999999999999999-------999763524------199999999999999999999775204699
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 4021210115553189999997424685433-689802699999999999999999973087764445766424788885
Q 001804 245 AKCIQEVRPVKEVSPLLLNAIQSFLPYYSSF-QKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLN 323 (1011)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~ 323 (1011)
.. +.+..|+..+...+....+..... +......+..+++.++ +.+..+.+.++..+.+ +++.+++.+.+
T Consensus 225 ~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~l~~~~~~~~~~~~~--~~~~~~~~~~~ 294 (959)
T d1wa5c_ 225 FE-----DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ---ELVQLYTTRYEDVFGP--MINEFIQITWN 294 (959)
T ss_dssp HH-----HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH---HHHHHHHHHCHHHHHH--HHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_conf 99-----99999999999998005531358014555028999999999---9999999985898999--99999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 30498888630589999999999997502455678876544686433898434465566556322799789999999997
Q 001804 324 KITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLI 403 (1011)
Q Consensus 324 ~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li 403 (1011)
.+.... ....++.++.+++.++..+.+...+ ...|.+.+.+..++..++
T Consensus 295 ~l~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~------------------------------~~~~~~~~~l~~i~~~li 343 (959)
T d1wa5c_ 295 LLTSIS-NQPKYDILVSKSLSFLTAVTRIPKY------------------------------FEIFNNESAMNNITEQII 343 (959)
T ss_dssp HHHHCC-SCTTSHHHHHHHHHHHHHHHTSHHH------------------------------HGGGCSHHHHHHHHHHTH
T ss_pred HHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHH
T ss_conf 999883-3555289999999999999851789------------------------------988720467888999999
Q ss_pred HHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 72026895359888309776663201211110234209999999999712060999999999987028888778882269
Q 001804 404 RRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLL 483 (1011)
Q Consensus 404 ~~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~ 483 (1011)
.++++++++|.+.|++||++|++++.++.+.++.|+|++.++..+..++++.+.+.+.+.+++..+...+ ....+|.
T Consensus 344 ~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~ 420 (959)
T d1wa5c_ 344 LPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMS---DPSKNWK 420 (959)
T ss_dssp HHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-------CHH
T ss_pred HHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC---CCCCCHH
T ss_conf 9885678778987750638777877400000217789999999999753411268899999999975146---8762167
Q ss_pred HHHHHHHHHHHHHHH----------HCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 887999999952574----------2378996999999856866313998516999999999851126881009999999
Q 001804 484 LKDAAYGAAAYVYYE----------LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCA 553 (1011)
Q Consensus 484 ~kea~l~alg~~a~~----------l~~~~~~~~~l~~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~i~~~ 553 (1011)
.||+++.++|+++.. ..+..++.+++.+++.|++...+...+++|+|+||++|+|++...++..+.+++.
T Consensus 421 ~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~ 500 (959)
T d1wa5c_ 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPI 500 (959)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 78899999999986312666655212304349999999999997368875099999999999877741267889999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHC--------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q ss_conf 994003789379999999999850102--------88832112422799999999976751122599----999999999
Q 001804 554 LIKLLMDKDLSVRLAACRSLCSHIEDA--------NFSERDFTDLLPICWDSCFKLVEEVQEFDSKV----QVLNLISIL 621 (1011)
Q Consensus 554 ll~~L~d~d~~Vr~~A~~aL~~~i~~~--------~f~~~~~~p~l~~il~~L~~ll~~~~~~e~~~----~ll~~l~~i 621 (1011)
++++|.|++.+||..||.|+..+++.. .+..+.+.||++++++.++..+.+......+. .++++++.+
T Consensus 501 l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~i 580 (959)
T d1wa5c_ 501 LATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRV 580 (959)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99872799615899999999999986600332001032887775699999999999986122025678899999999999
Q ss_pred HHHHCC-CCCHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 996125-41308899999998772144---520599999999999999807787-1114638989985218899984305
Q 001804 622 IGHVSE-VIPYANKLVQFFQKVWEESS---GESLLQIQLLIALRNFVVALGYQS-HNCYSMLLPILRRGIDINSPDELNL 696 (1011)
Q Consensus 622 i~~~~~-i~p~~~~l~~~L~~lw~~~~---~~~~l~~~il~~l~~lv~a~~~~~-~~~~~~~~pii~~~l~~~~~~~~~l 696 (1011)
++++++ +.||+..+++.|.++|.... .+......++++++.++.+.++.. ..+.+.++|++..+++. +..++
T Consensus 581 i~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~---~~~~~ 657 (959)
T d1wa5c_ 581 LQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE---DIQEF 657 (959)
T ss_dssp HHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT---TCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCHHH
T ss_conf 998798888899999999999999985684236789999999999998428135999999999999999843---31647
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2349999999984099997779946768999-997322249999999889776151344231399999999996327550
Q 001804 697 LEDSMLLWEATISHAPVMVPQLLAYFPCLVE-IMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVND 775 (1011)
Q Consensus 697 ~e~~l~L~~~l~~~~~~~~~~l~~Lf~~l~~-~~~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~ 775 (1011)
.++++++|..++++.+.+++.++++|+.++. .++...++++.+..++++|+.+|+..+.+ ...+..++..++.....
T Consensus 658 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~~~~~l~~~~~ 735 (959)
T d1wa5c_ 658 IPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKAY 735 (959)
T ss_dssp HHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCC--HHHHHHHHHHHHCCCCC
T ss_conf 8999999999987477866889999999863788877611899999999999728786446--28799999998779830
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHH
Q ss_conf 34763998999999737987-5367999999999998219988986057889999999999998-684999997004314
Q 001804 776 KGLLIILPVIDMLIQCFPIQ-VPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILV-MNANYLAQLTSEPSL 853 (1011)
Q Consensus 776 ~~~~~~~~l~e~li~~~~~~-~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~-~~p~~~~~~l~~~~~ 853 (1011)
+ ..+..+++.+++.++.. ..++++.++..++..+.+ .+.+ .+..+++..++++++ ++|+.+.+++.+..
T Consensus 736 ~--~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 806 (959)
T d1wa5c_ 736 E--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQN---SKTE---RYVKKLTVFFGLISNKLGSDFLIHFIDEVQ- 806 (959)
T ss_dssp H--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGS---SCCH---HHHHHHHHHHHHHHHHHCHHHHHHHHHTTS-
T ss_pred H--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHC-
T ss_conf 6--899999999999785144676899999999999870---4608---999999999999998719999999999843-
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 577753189615989999999998729999951-469999998988516945899989999999999740477654-443
Q 001804 854 SLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDL-AEE 931 (1011)
Q Consensus 854 ~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l~~l~~~~~~~~~~l~~~~~~~-~~~ 931 (1011)
. +.....+...|+.+++++.+. +||++++|+++|+.. .+.....+..++..|++.+.+..+.. .++
T Consensus 807 ------~-----~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~l~~ll~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 874 (959)
T d1wa5c_ 807 ------D-----GLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVIN-GQFFQSKYPTLISSTMNSIIETASSQSIAN 874 (959)
T ss_dssp ------T-----THHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHS-CHHHHHHCGGGHHHHHHHHHHHHHSCSTTC
T ss_pred ------H-----HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf ------2-----1589999999973141039999999999999998658-861425799999999999998762654332
Q ss_pred CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHCCHHHHHHHH
Q ss_conf 3689843457-889999999199999963309996----51474899999999999980940-99988613999999999
Q 001804 932 ESSGDNMSSS-KYHGEGTIPSKELRRRQIKFSDPV----NQLSLENSVRENLQTCATLHGDS-FNSTMSRMHSSALMQLK 1005 (1011)
Q Consensus 932 ~~~~d~~~~~-~~~~~~~~~~~~~r~~~~~~~dpv----~~~~l~~~~~~~l~~~~~~~g~~-f~~~~~~~~~~~~~~l~ 1005 (1011)
...++..... .+.+++.++....+.......||+ +++++++|+++.++++++.+|++ |+++++++||+++++|+
T Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~L~ 954 (959)
T d1wa5c_ 875 LKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQVKLN 954 (959)
T ss_dssp SCCSCC-----CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHHGGGSCHHHHHHHH
T ss_pred CCCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 01320111445642231202567998663436974457765229999999999998759778999999739999999999
Q ss_pred HHHH
Q ss_conf 9840
Q 001804 1006 QALK 1009 (1011)
Q Consensus 1006 ~~l~ 1009 (1011)
.+|-
T Consensus 955 ~~l~ 958 (959)
T d1wa5c_ 955 QLLV 958 (959)
T ss_dssp HHHC
T ss_pred HHHC
T ss_conf 9856
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|