Citrus Sinensis ID: 001809

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010
MEHPFSPKEKGTGYWASPRAPMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTSNVMASNSSVASEGGGTSNAMESSFDRGDRIGFQQTSTDCYPIDTNDADDLVPKQSSGVYRENNTNMSNSMICRPVPPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVSNFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSKSGLEADGPPEQVMSGSRRPMEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDSTSIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELNKSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAADNMDTRREGDDGIIENNQPTTSSTTDSSNGSGSLVHASSVSSPSFEEGKHLKIHPGSDDIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFLAGSSSCFLAGVS
cccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHcccEEEEccccccccccccccccccccccccccccEEccccccccHHHHHHHcccccEEEcccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccccccccEEEEEEcccEEEccccHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccHHHHHHHccccEEEEEEccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEcccccEEEEcccccHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccEEEcccc
cccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHcccccHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEccccEEccHHHHcHcEEEEEEEEEcccccccccccccEEEEccccccccccEEccccccccHHHHHHccccEEEEEEEEccccccEEEEEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccEEEccccccccccccEEEEEEccEEEEccHHHHHHHHHHHHHHcccccccHHHHHHccccccccccHHccccHccHHHHHHHHcccEEEEEEEEEcccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHccEEcHHHHccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHcccHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccHHHHcccccccccccccEcccccccccccccccHcccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEEcccccHHHHHHHHHHHcccccccEEEEEEcccccEEEEEcccHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccccEEcccc
mehpfspkekgtgywasprapmenlapldcgtrssnsgdlfnnfsdllnfdayagwcnspsvtdqmfasygfssfqstpcasfdtsnvmasnssvasegggtsnamessfdrgdrigfqqtstdcypidtndaddlvpkqssgvyrenntnmsnsmicrpvppsldEKMLRALSFFklssgggilaqvwvprkqgddyilstsdqpyLLDQMLAGYREVSRKftfsaeakpgtflglpgrvfsskvpewtsnvayynEAEYARVTHAVNHAVRSCialpvfqfpeiscsAVLEIVsvkekpnfdAEIENICNALQAVnlrttapprllpqniSRNQKAALAEITDVLRAVCHAHrlplaltwipcnydeeaVDEVIKVRVRhsntssdgksvlciegtacyvndsdmqgFVHACSEHYLEegqgvagkalqsnhpfffpdvklyditefplvhHARKFGLNAAVAIRLRstytgdddyiLEFFLpvtikgsseQQLLLNNLSGTMQRMCRSlrtvsdaeliqdegskfgfqkevvsnfppmvmsrrnsqsalsdsdfnSIEKITLSvsnsksgleadgppeqvmsgsrrpmekkrstaekNVSLSVLQQYFSGSLKDAaksigvcpttLKRICrqhgisrwpsrkinKVNRSLKKIQTVLNSvqgvegglkfdpttggfvAAGSIIQefdaqksslhpdknmpvrnsesitkdstsipptlsidgekFVVKVEEDecsvdknqvgplsmliqnsskgelnkssvnlidcsedskliltdagpfwqarlgtaawdspdtasMVSYYAKggekgarnknglqlessdchfvsqssnslaaadnmdtrregddgiiennqpttssttdssngsgslvhassvsspsfeegkhlkihpgsddigskiIVKATYKEDiirfkfdpsagcfQLYEEVARRLKLQNGtfqlkylddeeEWVMLVSDSDLQECFDILESLGKRSVRFLVRDiscnvgssgssncflagssscflagvs
mehpfspkekgtgywasprapMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTSNVMASNssvasegggtsNAMESSFDRGDRIGFQQTSTDCYPIDTNDADDLVPKQSSGVyrenntnmsnsmICRPVPPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAeakpgtflglpgrvfSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVrhsntssdgksvlcIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQdegskfgfqkeVVSNFPPMVMSRRNSQSALSDSDFNSIEKITLsvsnsksgleadgppeqvmsgsrrpmekkrstaeknvslSVLQQYFSGSLKDAAKSIGVCPTTLKRIcrqhgisrwpsrkinkvnrSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDaqksslhpdknmpvrnsesitkdstsipptlsiDGEKFVVKVEEDEcsvdknqvgplSMLIQNSSKGELNKSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAADNMDTRREGDdgiiennqpttssttdssngsGSLVHASSVSSPSFEEGKhlkihpgsddigskIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNvgssgssncflagssscflagvs
MEHPFSPKEKGTGYWASPRAPMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTsnvmasnssvasEGGGTSNAMESSFDRGDRIGFQQTSTDCYPIDTNDADDLVPKQSSGVYRENNTNMSNSMICRPVPPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEqqlllnnlSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVSNFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSKSGLEADGPPEQVMSGSRRPMEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDSTSIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELNKSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAADNMDTRREGDDGIIENNQPttssttdssngsgslvhassvsspsFEEGKHLKIHPGSDDIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDIscnvgssgssncFLAGSSSCFLAGVS
**************************************DLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQ*******************************************************************************************KMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNT**DGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTV*****************************************************************************************SVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEF**************************************FVVKV*******************************VNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYY********************************************************************************************DIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFLAGSSSCFL****
**********GTGYWA************************FNNFSDLLNFDAYAGWCNSPSVTDQMFA********************************************************************************************V*PSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDE***********SSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGT**********************************************************ITLSVSNSKSGL***************************VSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISR*************************************************************************************************************************************************************************************************************************************************************************KATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISC************AGSSSCFLAGVS
***********TGYWASPRAPMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTSNVMA*****************SSFDRGDRIGFQQTSTDCYPIDTNDADDLVPKQSSGVYRENNTNMSNSMICRPVPPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVSNFPPMVMSR*********SDFNSIEKITLSVSNSK*****************************NVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDSTSIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELNKSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAADNMDTRREGDDGIIENNQP****************************GKHLKIHPGSDDIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFLAGSSSCFLAGVS
******************RAPMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTSNVMASNSSVASEGGGTSNAMESSFDRGDRIGFQQTSTDCYP**********************************PPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELI***************************************************************************TAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKF***TGGFVAAGSI****************************************************************************************KL****A**F**********DSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAAD*MD********************************************************GSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCN***********************
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEHPFSPKEKGTGYWASPRAPMENLAPLDCGTRSSNSGDLFNNFSDLLNFDAYAGWCNSPSVTDQMFASYGFSSFQSTPCASFDTSNVMASNSSVASEGGGTSNAMESSFDRGDRIGFQQTSTDCYPIDTNDADDLVPKQSSGVYRENNTNMSNSMICRPVPPSLDEKMLRALSFFKLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVSNFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSKSGLEADGPPEQVMSGSRRPMEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDSTSIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELNKSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNSLAAADNMDTRREGDDGIIENNQPTTSSTTDSSNGSGSLVHASSVSSPSFEEGKHLKIHPGSDDIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFLAGSSSCFLAGVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1010 2.2.26 [Sep-21-2011]
O22864947 Protein NLP8 OS=Arabidops yes no 0.912 0.973 0.495 0.0
Q9M1B0894 Protein NLP9 OS=Arabidops no no 0.838 0.947 0.509 0.0
Q0JC27936 Protein NLP2 OS=Oryza sat yes no 0.881 0.950 0.435 0.0
Q5NB82938 Protein NLP3 OS=Oryza sat no no 0.503 0.542 0.424 1e-115
Q8RWY4841 Protein NLP6 OS=Arabidops no no 0.524 0.630 0.423 1e-112
Q84TH9959 Protein NLP7 OS=Arabidops no no 0.5 0.526 0.416 1e-108
Q9SFW8808 Protein NLP5 OS=Arabidops no no 0.486 0.607 0.435 1e-107
Q9LE38844 Protein NLP4 OS=Arabidops no no 0.487 0.582 0.429 1e-104
Q8H111909 Protein NLP1 OS=Arabidops no no 0.491 0.545 0.375 3e-87
Q10S83942 Protein NLP1 OS=Oryza sat no no 0.348 0.373 0.457 4e-86
>sp|O22864|NLP8_ARATH Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1 Back     alignment and function desciption
 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1021 (49%), Positives = 647/1021 (63%), Gaps = 99/1021 (9%)

Query: 1   MEHPFSPKEKGTGYWAS-PRAPMENLAP-LDCGTRSSNSGDLFNNFSDLLNFDAYAGWCN 58
           ME+PF+ +EKG G ++  P   M+ L+     G R+  S D+FN  S+L+NFD+ A WCN
Sbjct: 1   MENPFASREKGFGNYSDFPTEQMDGLSSNFGSGVRNLISDDMFNPSSELMNFDSLAAWCN 60

Query: 59  SPSVTDQMFASYGFSSFQSTPCASFDTSNVMASNSSVASEGGGTSNAMESSFDRGDRIGF 118
           SPS TD +FA YG S+ Q  P  +F + +V    ++  +    +   +ESS+   +R   
Sbjct: 61  SPSATDILFAQYGLSNSQPMPFGAFTSFHVADPKATSLTR---SFYDLESSYYGEERSSA 117

Query: 119 QQTSTDCYPIDTNDADDLVPKQSSGVYRE-NNTNMSNSMICRPVPPSLDEKMLRALSFFK 177
           Q+ ++  +   ++D+D+L  K+   V ++    N+ N  I R +  SLDEKML+ALS F 
Sbjct: 118 QEMNSQFH--RSSDSDELSGKRRKVVNQKIGFPNVLNCTIPRSLSHSLDEKMLKALSLFM 175

Query: 178 LSSGGG--ILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFL 235
            SSG G  ILAQVW P K GD Y+LST DQ YLLD   + YREVSR+FTF+AEA   +F 
Sbjct: 176 ESSGSGEGILAQVWTPIKTGDQYLLSTCDQAYLLDPRFSQYREVSRRFTFAAEANQCSFP 235

Query: 236 GLPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIV 295
           GLPGRVF S VPEWTSNV YY   EY R+ HA+++ VR  IA+P+ +    SC AV+E+V
Sbjct: 236 GLPGRVFISGVPEWTSNVMYYKTDEYLRMKHAIDNEVRGSIAIPILEASGTSCCAVMELV 295

Query: 296 SVKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHR 355
           + KEKPNFD E++++C ALQAVNLRT A PR  PQ +S +Q+ ALAEI DVLR VCHAH+
Sbjct: 296 TSKEKPNFDMEMDSVCRALQAVNLRTAAIPR--PQYLSSSQRDALAEIQDVLRTVCHAHK 353

Query: 356 LPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACS 415
           LPLAL WIPC  D+          +R S   S    +LCIE TACYVND +M+GFVHAC 
Sbjct: 354 LPLALAWIPCRKDQS---------IRVSGQKSGENCILCIEETACYVNDMEMEGFVHACL 404

Query: 416 EHYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGD 475
           EH L E +G+ GKA  SN PFF  DVK YDI+E+P+V HARK+GLNAAVAI+LRSTYTG+
Sbjct: 405 EHCLREKEGIVGKAFISNQPFFSSDVKAYDISEYPIVQHARKYGLNAAVAIKLRSTYTGE 464

Query: 476 DDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVV 535
           DDYILE FLPV++KGS EQQLLL++LSGTMQR+CR+LRTVS+    + EG+K GF+   +
Sbjct: 465 DDYILELFLPVSMKGSLEQQLLLDSLSGTMQRICRTLRTVSEVGSTKKEGTKPGFRSSDM 524

Query: 536 SNFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSK--SGLEADGPPEQVMSGSRRPMEK 593
           SNFP    S  N Q+   DS+FNS   +   +S+ K  S   + G  EQ +S +R P EK
Sbjct: 525 SNFP-QTTSSENFQTISLDSEFNSTRSMFSGMSSDKENSITVSQGTLEQDVSKARTP-EK 582

Query: 594 KRSTAEKNVSLSVLQQYFSGSLKDAAKSIG-------------VCPTTLKRICRQHGISR 640
           K+ST EKNVSLS LQQ+FSGSLKDAAKS+G              CPTTLKRICRQHGI R
Sbjct: 583 KKSTTEKNVSLSALQQHFSGSLKDAAKSLGGETSAYFQAWVYFFCPTTLKRICRQHGIMR 642

Query: 641 WPSRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDK 700
           WPSRKINKVNRSL+KIQTVL+SVQGVEGGLKFD  TG F+A    IQE D QK     D 
Sbjct: 643 WPSRKINKVNRSLRKIQTVLDSVQGVEGGLKFDSATGEFIAVRPFIQEIDTQKGLSSLDN 702

Query: 701 NMPVRNSESITKDSTSIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELN 760
           +   R S+    D TS              K++E + SVD                    
Sbjct: 703 DAHARRSQEDMPDDTSF-------------KLQEAK-SVD-------------------- 728

Query: 761 KSSVNLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQ 820
               N I   ED+ +     G F +       W         ++ AK  E G     G++
Sbjct: 729 ----NAIKLEEDTTMNQARPGSFMEVNASGQPW---------AWMAK--ESGLNGSEGIK 773

Query: 821 LESSDCHFVSQSSNSLAAADNMDTRREGDDGIIENNQPTTSSTTDSSNGSGSLVHASSVS 880
              S C+      +S+  +D MD        I+E NQ  + S +DSSNGSG+++  SS  
Sbjct: 774 ---SVCNL-----SSVEISDGMDPTIRCSGSIVEPNQSMSCSISDSSNGSGAVLRGSS-- 823

Query: 881 SPSFEEGKHLKIH-PGSDDIGSK-IIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQ 938
           S S E+   ++ H   S + GS  +IVKA+Y+ED +RFKF+PS GC QLY+EV +R KLQ
Sbjct: 824 STSMEDWNQMRTHNSNSSESGSTTLIVKASYREDTVRFKFEPSVGCPQLYKEVGKRFKLQ 883

Query: 939 NGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFL 998
           +G+FQLKYLDDEEEWVMLV+DSDLQEC +IL  +GK SV+FLVRD+S  +GSSG SN +L
Sbjct: 884 DGSFQLKYLDDEEEWVMLVTDSDLQECLEILHGMGKHSVKFLVRDLSAPLGSSGGSNGYL 943

Query: 999 A 999
            
Sbjct: 944 G 944
Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M1B0|NLP9_ARATH Protein NLP9 OS=Arabidopsis thaliana GN=NLP9 PE=2 SV=1 Back     alignment and function description
>sp|Q0JC27|NLP2_ORYSJ Protein NLP2 OS=Oryza sativa subsp. japonica GN=NLP2 PE=2 SV=2 Back     alignment and function description
>sp|Q5NB82|NLP3_ORYSJ Protein NLP3 OS=Oryza sativa subsp. japonica GN=NLP3 PE=3 SV=1 Back     alignment and function description
>sp|Q8RWY4|NLP6_ARATH Protein NLP6 OS=Arabidopsis thaliana GN=NLP6 PE=2 SV=2 Back     alignment and function description
>sp|Q84TH9|NLP7_ARATH Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2 Back     alignment and function description
>sp|Q9SFW8|NLP5_ARATH Protein NLP5 OS=Arabidopsis thaliana GN=NLP5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE38|NLP4_ARATH Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1 Back     alignment and function description
>sp|Q8H111|NLP1_ARATH Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1 Back     alignment and function description
>sp|Q10S83|NLP1_ORYSJ Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1010
255578890985 transcription factor, putative [Ricinus 0.970 0.994 0.667 0.0
449469208988 PREDICTED: protein NLP8-like [Cucumis sa 0.964 0.985 0.581 0.0
359478251995 PREDICTED: protein NLP8-like [Vitis vini 0.942 0.956 0.575 0.0
356557351973 PREDICTED: protein NLP8-like [Glycine ma 0.938 0.974 0.578 0.0
224095638814 predicted protein [Populus trichocarpa] 0.799 0.991 0.650 0.0
356547324968 PREDICTED: protein NLP8-like [Glycine ma 0.952 0.993 0.566 0.0
224132836806 predicted protein [Populus trichocarpa] 0.794 0.995 0.640 0.0
33468532972 NIN-like protein 2 [Lotus japonicus] 0.938 0.975 0.573 0.0
147842299 1269 hypothetical protein VITISV_040692 [Viti 0.912 0.726 0.588 0.0
356544504946 PREDICTED: protein NLP8-like [Glycine ma 0.930 0.993 0.562 0.0
>gi|255578890|ref|XP_002530298.1| transcription factor, putative [Ricinus communis] gi|223530154|gb|EEF32065.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1319 bits (3413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1007 (66%), Positives = 785/1007 (77%), Gaps = 27/1007 (2%)

Query: 1    MEHPFSPKEKGTGYWASPRAPMENLAPLDCGTRSSNSG-DLFNNFSDLLNFDAYAGWCNS 59
            ME PFS KEKG  YW SPRA ++ +A L  GTR+  S  D+FN+FS+L+NFD YAGWCNS
Sbjct: 1    MESPFSSKEKGINYWGSPRAQVDGMAQLTGGTRNLISEEDVFNHFSELMNFDTYAGWCNS 60

Query: 60   PSVTDQMFASYGFSSFQSTPCASFDTSNVMASNSSVASEGGGTSNAMESSFDRGDRIGFQ 119
            PS  DQM A YG   FQST  ASFD  NV   NS+ +  G  +S A  +S+  GD+  FQ
Sbjct: 61   PSAADQMSAFYGLLPFQSTAYASFDALNVSEPNSTFSVSGDASSTA-GASYSCGDK--FQ 117

Query: 120  QTSTD--CYPIDTNDADDLVPKQSSGVYRENN-TNMSNSMICRPVPPSLDEKMLRALSFF 176
            Q +    C+  D  + DDL  KQ +G  R++N ++++N MI +PV  SLDEKMLRALS  
Sbjct: 118  QANFQVICHS-DAMNTDDLGTKQINGTQRQSNLSDIANRMISQPVGLSLDEKMLRALSLL 176

Query: 177  KLSSGGGILAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLG 236
            K SSGGGILAQVW+P + GD YI++T +QPYLLDQ LAGYREVSR +TFSAE KPG  LG
Sbjct: 177  KESSGGGILAQVWIPIQHGDQYIMTTFEQPYLLDQSLAGYREVSRTYTFSAEVKPGLPLG 236

Query: 237  LPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVS 296
            LPGRVF SKVPEWTSNVAYY+ AEY RV HA++H V+  IALPVFQ PE+SC AVLE+V+
Sbjct: 237  LPGRVFISKVPEWTSNVAYYSNAEYLRVKHALHHRVQGSIALPVFQPPEMSCCAVLELVT 296

Query: 297  VKEKPNFDAEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRL 356
            VKEKP+FD+E+E++C ALQ VNLR+TAPPRLLPQ++SRNQKAALAEI+DVLRAVCHAHRL
Sbjct: 297  VKEKPDFDSEMESVCLALQTVNLRSTAPPRLLPQSLSRNQKAALAEISDVLRAVCHAHRL 356

Query: 357  PLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSE 416
            PLALTW+PCNY E  VDE+IKVRVR  N+    KSVLCI   ACYV D  M+GFVHACSE
Sbjct: 357  PLALTWVPCNYAEGTVDEIIKVRVRDGNSRPAEKSVLCIWRQACYVKDGKMEGFVHACSE 416

Query: 417  HYLEEGQGVAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDD 476
            H +EEGQG+AGKALQSNHPFFFPDVK YDITE+PLVHHARK+GLNAAVAIRLRSTYTGDD
Sbjct: 417  HCIEEGQGIAGKALQSNHPFFFPDVKAYDITEYPLVHHARKYGLNAAVAIRLRSTYTGDD 476

Query: 477  DYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVS 536
            DYILEFFLPV IKGSSEQQLLLNNLSGTMQ++C SLRTVSDA+L   E  K  FQK  V 
Sbjct: 477  DYILEFFLPVNIKGSSEQQLLLNNLSGTMQKICISLRTVSDADLGGRETFKVNFQKGAVP 536

Query: 537  NFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSKS-GLEADGPPEQVMSGSRRPMEKKR 595
            +FPPM  S  +SQ+ LS+++ NS +KI L  S+S++ G E+DGP EQVMS SRR +EKKR
Sbjct: 537  SFPPMSAS-ISSQTTLSEANLNSTDKIPLDASSSRNDGAESDGPHEQVMSASRRQLEKKR 595

Query: 596  STAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKK 655
            STAEKNVSLSVLQQYF+GSLK+AAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSL+K
Sbjct: 596  STAEKNVSLSVLQQYFAGSLKNAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLRK 655

Query: 656  IQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDST 715
            IQTVL+SVQGVEGGLKFDPTTGGFVAAGSIIQEFD ++S    DKN   RNSE+ T D+ 
Sbjct: 656  IQTVLDSVQGVEGGLKFDPTTGGFVAAGSIIQEFDPKQSFPSSDKNCAARNSENATVDAV 715

Query: 716  SIPPTLSIDGEKFVVKVEEDECSVDKNQVGPLSMLIQNSSKGELNKSSVNLIDCSEDSKL 775
            S+PP    DG    VKVEED+C +D             +  G L KSS+ +  CSEDSK 
Sbjct: 716  SVPPAPCTDGGNSTVKVEEDDCFID-------------TCAGLLMKSSIPMNACSEDSKS 762

Query: 776  ILTDAGPFWQARLGTAAWDSPDTASMVSYYAKGGEKGARNKNGLQLESSDCHFVSQSSNS 835
            + TDA  F +A LG+  W   +       + KGG+ G  +K  ++L++S   FVS+SS S
Sbjct: 763  VATDAEMFQEASLGSGPWACLENTPT---FVKGGKWGL-DKGSMKLDNSGTQFVSRSSCS 818

Query: 836  LAAADNMDTRREGDDGIIENNQPTTSSTTDSSNGSGSLVHASSVSSPSFEEGKHLKIHPG 895
            LAA D +DT+ EG+DGI+E+NQP  SS TDSSNGSGS++H S  SSPSFEEGK+ K+   
Sbjct: 819  LAAGDELDTKIEGEDGIVEHNQPACSSMTDSSNGSGSMMHGSISSSPSFEEGKYSKVKTS 878

Query: 896  SDDIGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVM 955
             DD GSKI +KATYKED IRFKF+PSAGCFQLYEEVA+R KLQNGTFQLKYLDDEEEWVM
Sbjct: 879  CDDSGSKITIKATYKEDTIRFKFEPSAGCFQLYEEVAKRFKLQNGTFQLKYLDDEEEWVM 938

Query: 956  LVSDSDLQECFDILESLGKRSVRFLVRDISCNVGSSGSSNCFLAGSS 1002
            LVSDSDLQEC +IL+ +G RSV+FLVRD    +GSSGSSNCFL GSS
Sbjct: 939  LVSDSDLQECIEILDYVGTRSVKFLVRDTPFTMGSSGSSNCFLGGSS 985

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449469208|ref|XP_004152313.1| PREDICTED: protein NLP8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359478251|ref|XP_002272610.2| PREDICTED: protein NLP8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356557351|ref|XP_003546980.1| PREDICTED: protein NLP8-like [Glycine max] Back     alignment and taxonomy information
>gi|224095638|ref|XP_002310422.1| predicted protein [Populus trichocarpa] gi|222853325|gb|EEE90872.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547324|ref|XP_003542064.1| PREDICTED: protein NLP8-like [Glycine max] Back     alignment and taxonomy information
>gi|224132836|ref|XP_002327892.1| predicted protein [Populus trichocarpa] gi|222837301|gb|EEE75680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|33468532|emb|CAE30325.1| NIN-like protein 2 [Lotus japonicus] Back     alignment and taxonomy information
>gi|147842299|emb|CAN71840.1| hypothetical protein VITISV_040692 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544504|ref|XP_003540690.1| PREDICTED: protein NLP8-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1010
TAIR|locus:2097588894 AT3G59580 [Arabidopsis thalian 0.600 0.678 0.573 5.6e-220
TAIR|locus:2058244947 AT2G43500 [Arabidopsis thalian 0.723 0.771 0.513 2.1e-187
TAIR|locus:2134941959 NLP7 "NIN like protein 7" [Ara 0.623 0.656 0.370 5.1e-123
TAIR|locus:2019424841 AT1G64530 [Arabidopsis thalian 0.498 0.598 0.426 2e-119
TAIR|locus:2030397844 AT1G20640 [Arabidopsis thalian 0.461 0.552 0.378 5.1e-114
TAIR|locus:2014624808 AT1G76350 [Arabidopsis thalian 0.486 0.607 0.429 7.1e-111
TAIR|locus:2059692909 AT2G17150 [Arabidopsis thalian 0.343 0.381 0.374 1.4e-95
TAIR|locus:2121738767 AT4G38340 [Arabidopsis thalian 0.198 0.260 0.347 1.3e-77
TAIR|locus:2168412256 RKD4 "RWP-RK domain-containing 0.097 0.382 0.336 1.2e-06
DICTYBASE|DDB_G0274295 548 DDB_G0274295 "RWP-RK domain-co 0.062 0.114 0.380 2.5e-06
TAIR|locus:2097588 AT3G59580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1701 (603.8 bits), Expect = 5.6e-220, Sum P(3) = 5.6e-220
 Identities = 361/630 (57%), Positives = 447/630 (70%)

Query:   126 YPIDTNDADDLVPKQS-SGVYRENNTNMSNSMICRPVPPSLDEKMLRALSFFKLSSGGGI 184
             Y + T+ +  ++P     G Y      +  + + R +  SLDEKML+ALS F   SG GI
Sbjct:    68 YGLSTSQS--IIPFGGLEGSYACEKRPLDCTSVPRSLSHSLDEKMLKALSLFMEFSGEGI 125

Query:   185 LAQVWVPRKQGDDYILSTSDQPYLLDQMLAGYREVSRKFTFSAEAKPGTFLGLPGRVFSS 244
             LAQ W P K GD Y+LST DQ YLLD  L+GYRE SR+FTFSAEA   ++ GLPGRVF S
Sbjct:   126 LAQFWTPIKTGDQYMLSTCDQAYLLDSRLSGYREASRRFTFSAEANQCSYPGLPGRVFIS 185

Query:   245 KVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLEIVSVKEKPNFD 304
              VPEWTSNV YY  AEY R+ HA+++ VR  IA+PV +    SC AVLE+V+ +EKPNFD
Sbjct:   186 GVPEWTSNVMYYKTAEYLRMKHALDNEVRGSIAIPVLEASGSSCCAVLELVTCREKPNFD 245

Query:   305 AEIENICNALQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHAHRLPLALTWIP 364
              E+ ++C ALQAVNL+T+  PR   Q +S NQK ALAEI DVLRAVC+AHRLPLAL WIP
Sbjct:   246 VEMNSVCRALQAVNLQTSTIPRR--QYLSSNQKEALAEIRDVLRAVCYAHRLPLALAWIP 303

Query:   365 CNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHACSEHYLEEGQG 424
             C+Y + A DE++KV  ++S   S    +LCIE T+CYVND +M+GFV+AC EHYL EGQG
Sbjct:   304 CSYSKGANDELVKVYGKNSKECS----LLCIEETSCYVNDMEMEGFVNACLEHYLREGQG 359

Query:   425 VAGKALQSNHPFFFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRSTYTGDDDYILEFFL 484
             + GKAL SN P F  DVK +DI E+PLV HARKFGLNAAVA +LRST+TGD+DYILEFFL
Sbjct:   360 IVGKALISNKPSFSSDVKTFDICEYPLVQHARKFGLNAAVATKLRSTFTGDNDYILEFFL 419

Query:   485 PVTIKGSSEXXXXXXXXSGTMQRMCRSLRTVSDAELIQDEGSKFGFQKEVVSNFPPMVMS 544
             PV++KGSSE        SGTMQR+CR+L+TVSDAE I  +G++FG +   ++N P   +S
Sbjct:   420 PVSMKGSSEQQLLLDSLSGTMQRLCRTLKTVSDAESI--DGTEFGSRSVEMTNLPQATVS 477

Query:   545 RRNSQSALSDSDFNSIEKITLSVSNSKSGLEA--DGPPEQVMSGSRRPMEKKRSTAEKNV 602
               +  +   D+D NS      ++S++K    A   G  +Q +SG+RR +EKK+S+ EKNV
Sbjct:   478 VGSFHTTFLDTDVNSTRSTFSNISSNKRNEMAGSQGTLQQEISGARR-LEKKKSSTEKNV 536

Query:   603 SLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLNS 662
             SL+VLQQYFSGSLKDAAKS+GVCPTTLKRICRQHGI RWPSRKINKVNRSL+KIQTVL+S
Sbjct:   537 SLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSLRKIQTVLDS 596

Query:   663 VQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNMPVRNSESITKDSTSIPP--T 720
             VQGVEGGLKFD  TG FVA G  IQEF  QKS    D++   R+   + +D  S+ P   
Sbjct:   597 VQGVEGGLKFDSVTGEFVAVGPFIQEFGTQKSLSSHDEDALARSQGDMDED-VSVEPLEV 655

Query:   721 LSIDGEKFVVKVEEDECSVDKN-QVGPLSM 749
              S DG    VK+EED   V+ N Q GP S+
Sbjct:   656 KSHDGGG--VKLEED---VETNHQAGPGSL 680
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009688 "abscisic acid biosynthetic process" evidence=RCA
TAIR|locus:2058244 AT2G43500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2134941 NLP7 "NIN like protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019424 AT1G64530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030397 AT1G20640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014624 AT1G76350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059692 AT2G17150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121738 AT4G38340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168412 RKD4 "RWP-RK domain-containing 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274295 DDB_G0274295 "RWP-RK domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O22864NLP8_ARATHNo assigned EC number0.49550.91280.9736yesno
Q0JC27NLP2_ORYSJNo assigned EC number0.43560.88110.9508yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1010
cd0640782 cd06407, PB1_NLP, A PB1 domain is present in NIN l 5e-33
pfam0204252 pfam02042, RWP-RK, RWP-RK domain 2e-26
smart0066681 smart00666, PB1, PB1 domain 3e-22
pfam0056484 pfam00564, PB1, PB1 domain 6e-19
cd0599281 cd05992, PB1, The PB1 domain is a modular domain m 2e-16
cd0640986 cd06409, PB1_MUG70, The MUG70 protein is a product 6e-07
>gnl|CDD|99728 cd06407, PB1_NLP, A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information 
 Score =  122 bits (307), Expect = 5e-33
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 903 IIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQN-GTFQLKYLDDEEEWVMLVSDSD 961
           + VKATY E+ IRF+  PS G  +L +E+A+R KL +   F LKYLDD+EEWV+L  D+D
Sbjct: 1   VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDAD 60

Query: 962 LQECFDILESLGKRSVRFLVRD 983
           L+EC D+  S G  ++R LV  
Sbjct: 61  LEECIDVYRSSGSHTIRLLVHA 82

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 82
>gnl|CDD|190197 pfam02042, RWP-RK, RWP-RK domain Back     alignment and domain information
>gnl|CDD|214770 smart00666, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|215996 pfam00564, PB1, PB1 domain Back     alignment and domain information
>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>gnl|CDD|99730 cd06409, PB1_MUG70, The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1010
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 99.95
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 99.95
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 99.93
PF0204252 RWP-RK: RWP-RK domain; InterPro: IPR003035 This do 99.88
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 99.82
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 99.66
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 99.61
cd0599281 PB1 The PB1 domain is a modular domain mediating s 99.56
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 99.04
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 98.81
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 98.75
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 98.7
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 98.69
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 98.04
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 97.64
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 96.88
cd0641178 PB1_p51 The PB1 domain is present in the p51 prote 96.69
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 96.44
KOG0695 593 consensus Serine/threonine protein kinase [Signal 96.38
cd0641097 PB1_UP2 Uncharacterized protein 2. The PB1 domain 95.99
PRK15429686 formate hydrogenlyase transcriptional activator Fh 95.85
cd0640579 PB1_Mekk2_3 The PB1 domain is present in the two m 95.4
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 94.4
PF0141877 HTH_6: Helix-turn-helix domain, rpiR family; Inter 93.01
PF0279645 HTH_7: Helix-turn-helix domain of resolvase; Inter 92.87
TIGR0176449 excise DNA binding domain, excisionase family. An 91.53
PF0295442 HTH_8: Bacterial regulatory protein, Fis family; I 91.44
PF1147065 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: 90.74
cd0476249 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain 90.59
cd0181271 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter 90.2
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 90.04
PF1272851 HTH_17: Helix-turn-helix domain 89.73
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 88.98
PF1354252 HTH_Tnp_ISL3: Helix-turn-helix domain of transposa 88.93
PRK0043095 fis global DNA-binding transcriptional dual regula 88.89
PF0152776 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transp 88.08
PRK09413121 IS2 repressor TnpA; Reviewed 87.66
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 86.9
cd0180972 Scythe_N Ubiquitin-like domain of Scythe protein. 86.68
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 86.59
smart00065149 GAF Domain present in phytochromes and cGMP-specif 86.38
PF1393644 HTH_38: Helix-turn-helix domain; PDB: 2W48_A. 86.08
PF02001106 DUF134: Protein of unknown function DUF134; InterP 85.73
cd0476149 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of 85.23
PRK0190577 DNA-binding protein Fis; Provisional 85.19
smart0034284 HTH_ARAC helix_turn_helix, arabinose operon contro 84.95
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 84.92
PF1338450 HTH_23: Homeodomain-like domain; PDB: 2X48_C. 84.68
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 84.64
PF03472149 Autoind_bind: Autoinducer binding domain; InterPro 84.44
PRK11302284 DNA-binding transcriptional regulator HexR; Provis 84.38
PRK11608326 pspF phage shock protein operon transcriptional ac 84.29
cd0176387 Sumo Small ubiquitin-related modifier (SUMO). Smal 83.85
cd0476368 HTH_MlrA-like Helix-Turn-Helix DNA binding domain 83.84
PRK11361457 acetoacetate metabolism regulatory protein AtoC; P 83.77
cd0180676 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn 83.66
PF1456087 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K 83.65
PRK15115444 response regulator GlrR; Provisional 83.16
PRK15482285 transcriptional regulator MurR; Provisional 83.12
TIGR01817534 nifA Nif-specific regulatory protein. This model r 83.05
cd0476467 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding dom 81.82
COG3284606 AcoR Transcriptional activator of acetoin/glycerol 81.72
TIGR02915445 PEP_resp_reg putative PEP-CTERM system response re 81.55
PRK10820520 DNA-binding transcriptional regulator TyrR; Provis 81.24
PRK05022509 anaerobic nitric oxide reductase transcription reg 81.09
TIGR01817534 nifA Nif-specific regulatory protein. This model r 80.92
PF1154380 UN_NPL4: Nuclear pore localisation protein NPL4; I 80.8
cd0110468 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain 80.76
COG1737281 RpiR Transcriptional regulators [Transcription] 80.59
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 80.09
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information 
Probab=99.95  E-value=3.6e-28  Score=220.01  Aligned_cols=81  Identities=51%  Similarity=0.927  Sum_probs=79.2

Q ss_pred             EEEEEEcCCCeEEEEeCCCcChHHHHHHHHHHcCccc-ceeeeEeecCCCCeEEEecCCcHHHHHHHHhHhCCCeEEEEE
Q 001809          903 IIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQN-GTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLV  981 (1010)
Q Consensus       903 ~~vKaty~~d~iRF~~~~s~g~~~L~~EIakRf~l~~-~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~~~~~~vkl~V  981 (1010)
                      |+|||+|++|+|||+|+|++||.+|++||++||++++ +.|+|||+|||||||+||||+||+||++|++.+++++|||+|
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v   80 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV   80 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence            5899999999999999999999999999999999998 789999999999999999999999999999999999999999


Q ss_pred             ee
Q 001809          982 RD  983 (1010)
Q Consensus       982 ~d  983 (1010)
                      |+
T Consensus        81 ~~   82 (82)
T cd06407          81 HA   82 (82)
T ss_pred             eC
Confidence            96

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein Back     alignment and domain information
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd06410 PB1_UP2 Uncharacterized protein 2 Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif [] Back     alignment and domain information
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms Back     alignment and domain information
>TIGR01764 excise DNA binding domain, excisionase family Back     alignment and domain information
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,] Back     alignment and domain information
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly Back     alignment and domain information
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins Back     alignment and domain information
>cd01812 BAG1_N Ubiquitin-like domain of BAG1 Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>PF12728 HTH_17: Helix-turn-helix domain Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3 Back     alignment and domain information
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional Back     alignment and domain information
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition Back     alignment and domain information
>PRK09413 IS2 repressor TnpA; Reviewed Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A Back     alignment and domain information
>PF02001 DUF134: Protein of unknown function DUF134; InterPro: IPR002852 The bacterial and archaeal proteins in this family have no known function Back     alignment and domain information
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily Back     alignment and domain information
>PRK01905 DNA-binding protein Fis; Provisional Back     alignment and domain information
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>PF03472 Autoind_bind: Autoinducer binding domain; InterPro: IPR005143 This domain binds N-acyl homoserine lactones (AHLs), which are also known as autoinducers Back     alignment and domain information
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional Back     alignment and domain information
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional Back     alignment and domain information
>cd01763 Sumo Small ubiquitin-related modifier (SUMO) Back     alignment and domain information
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators Back     alignment and domain information
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional Back     alignment and domain information
>cd01806 Nedd8 Nebb8-like ubiquitin protein Back     alignment and domain information
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A Back     alignment and domain information
>PRK15115 response regulator GlrR; Provisional Back     alignment and domain information
>PRK15482 transcriptional regulator MurR; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators Back     alignment and domain information
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] Back     alignment and domain information
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator Back     alignment and domain information
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway Back     alignment and domain information
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA Back     alignment and domain information
>COG1737 RpiR Transcriptional regulators [Transcription] Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1010
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1ip9_A85 BEM1 protein; ubiquitin alpha/beta roll, signaling 1e-07
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 1e-06
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 67.6 bits (164), Expect = 2e-11
 Identities = 94/741 (12%), Positives = 208/741 (28%), Gaps = 240/741 (32%)

Query: 246 VPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVF-QFPEISCSAVLEIVSVKEKPNFD 304
           V +   ++   ++ E   +  + +    +           E     V + V    + N+ 
Sbjct: 38  VQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYK 92

Query: 305 ---AEIENICNA--------LQAVNLRTTAPPRLLPQNISRNQKAALAEITDVLRAVCHA 353
              + I+             ++  +            N+SR Q     ++   L  +  A
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLRQALLELRPA 150

Query: 354 HRLPLALTWIPCNYDEEAVDEVIKVRVRHSNTSSDGKSVLCIEGTACYVNDSDMQGFVHA 413
             + +                            S GK+ + ++                 
Sbjct: 151 KNVLI-----------------------DGVLGS-GKTWVALD----------------V 170

Query: 414 CSEHYLEEGQGVAGKALQSNHPF--FFPDVKLYDITEFPLVHHARKFGLNAAVAIRLRST 471
           C  +            +Q    F  F+ ++K  +  E  L        L   +  ++   
Sbjct: 171 CLSY-----------KVQCKMDFKIFWLNLKNCNSPETVLEM------LQ-KLLYQIDPN 212

Query: 472 YTGDDDYILEFFLPVTIKGSSEQQLLLNNLSGTMQRMCRSL---RTVSDAELIQDEGSKF 528
           +T   D+     L +     S Q  L   L    +     L     V +A+        F
Sbjct: 213 WTSRSDHSSNIKLRI----HSIQAELRRLLKS--KPYENCLLVLLNVQNAKAWN----AF 262

Query: 529 GFQKEVVSNFPPMVMSRRNSQSALSDSDFNSIEKITLSVSNSKSGLEADGPPEQVMSGSR 588
               ++      ++ +R                 +T  +S + +              + 
Sbjct: 263 NLSCKI------LLTTRFKQ--------------VTDFLSAATT--------------TH 288

Query: 589 RPMEKKRSTAEKNVSLSVLQQYFSGSLKD---AAKSIGVCPTTLKRICR--QHGISRW-P 642
             ++    T   +   S+L +Y     +D      +    P  L  I    + G++ W  
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDN 346

Query: 643 SRKINKVNRSLKKIQTVLNSVQGVEGGLKFDPTTGGFVAAGSIIQEFDAQKSSLHPDKNM 702
            + +N  ++    I++ LN           +P             E+      L      
Sbjct: 347 WKHVNC-DKLTTIIESSLNV---------LEPA------------EYRKMFDRL------ 378

Query: 703 PVRNSESITKDSTSIPP-TLSI---DGEKFVVKVEEDECS----VDKNQVGP-------- 746
                 S+   S  IP   LS+   D  K  V V  ++      V+K             
Sbjct: 379 ------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 747 LSMLIQNSSKGELNKSSV---NLIDCSEDSKLILTDAGPFWQARLGTAAWDSPDTASMVS 803
           L + ++  ++  L++S V   N+    +   LI      ++ + +G              
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG-------------- 478

Query: 804 YYAKGGEKGARNKNGLQLESSDCHFVSQ-----SSNSLAAADNMDTRREGD--DGIIENN 856
           ++ K  E         ++   D  F+ Q     S+   A+   ++T ++       I +N
Sbjct: 479 HHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537

Query: 857 QPTTSSTTDSSNGSGSLVHASSVSSPSFEEGKHLKIHPGSDDIGSKIIVKATYKEDIIRF 916
            P      +      +++       P  EE  +L     +               D++R 
Sbjct: 538 DPKYERLVN------AILD----FLPKIEE--NLICSKYT---------------DLLRI 570

Query: 917 KF-DPSAGCFQLYEEVARRLK 936
                      ++EE  ++++
Sbjct: 571 ALMAEDEA---IFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A Length = 85 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89 Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Length = 98 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1010
d2bkfa185 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB 5e-22
d1ip9a_85 d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker' 3e-21
d1pqsa_77 d.15.2.2 (A:) Cell division control protein 24, CD 0.001
d1wmha_83 d.15.2.2 (A:) Protein kinase C, iota type {Human ( 0.004
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (220), Expect = 5e-22
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 902 KIIVKATYKEDIIRFKFDPSA--GCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSD 959
           ++ +  T+K +I  F            +   V     L   T Q+KYLD+E E V + S 
Sbjct: 4   QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL--NTIQIKYLDEENEEVSINSQ 61

Query: 960 SDLQECFDILESLGKRSVRFLVRD 983
            + +E   +    G   ++  V +
Sbjct: 62  GEYEEALKMAVKQGN-QLQMQVHE 84
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 77 Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1010
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 99.91
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 99.78
d1wmha_83 Protein kinase C, iota type {Human (Homo sapiens) 98.04
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 97.24
d1pqsa_77 Cell division control protein 24, CDC24, C-termina 97.06
d1oeya_82 Neutrophil cytosol factor 2 (p67phox component of 96.73
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 95.96
d2c60a180 Mitogen-activated protein kinase kinase kinase 3, 95.75
d2nptb182 Mitogen-activated protein kinase kinase kinase 2, 95.55
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 94.33
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.34
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 92.54
d1g2ha_61 Transcriptional regulator TyrR, C-terminal domain 92.45
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 90.7
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 90.59
d1h4ra384 Merlin {Human (Homo sapiens) [TaxId: 9606]} 86.87
d1wjna_97 Tubulin-folding protein TbcE {Mouse (Mus musculus) 85.85
d1etxa_89 FIS protein {Escherichia coli [TaxId: 562]} 83.66
d1umqa_60 Photosynthetic apparatus regulatory protein PprA ( 83.04
d1j8ca_103 Ubiquitin-like N-terminal domain of PLIC-2 {Human 82.02
d1ntca_91 DNA-binding domain of NTRC {Salmonella typhimurium 81.57
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 81.01
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=177.89  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=74.7

Q ss_pred             EEEEEEECCCCEEEEEECC--CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             1999998289729999479--96768999999988074466266675239999599804783899999985709974999
Q 001809          902 KIIVKATYKEDIIRFKFDP--SAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRF  979 (1010)
Q Consensus       902 ~~tVKAty~ed~iRF~~~~--s~g~~~L~~EIakRf~ld~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vkl  979 (1010)
                      .++|||||++|++||++.+  +|+|.+|+++|++||+|++  |+|||+|||+|||+|+||+||+||+++++. +.++|||
T Consensus         4 ~vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~~--~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~-~~~~irl   80 (85)
T d2bkfa1           4 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT--IQIKYLDEENEEVSINSQGEYEEALKMAVK-QGNQLQM   80 (85)
T ss_dssp             CEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS--EEEEEECTTSCEEEECSHHHHHHHHHHHHH-TTTEEEE
T ss_pred             CEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCCC--CEEEEECCCCCEEEEECHHHHHHHHHHHHC-CCCEEEE
T ss_conf             0899999878458999648877769999999998669664--138987599998998068889999999866-8988999


Q ss_pred             EEEEC
Q ss_conf             97306
Q 001809          980 LVRDI  984 (1010)
Q Consensus       980 ~V~d~  984 (1010)
                      .|||.
T Consensus        81 ~v~d~   85 (85)
T d2bkfa1          81 QVHEG   85 (85)
T ss_dssp             EEEEC
T ss_pred             EEECC
T ss_conf             99649
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure