Citrus Sinensis ID: 001812

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010
Protein Sequence
MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcccccccccccccEEEEEEHHHcccccccccccEEEccccccccccccEEEEEEEEEEEcccccccccEEEEEEccccccccccEEEEEcccccEEEcccEEEEcEEEcccccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEcccEEEEEEEEcccccccccccccEEEEEcccccccccEEEEEEccccccccHHccccEEEEEEEcccccccccEEEEEEcccccccEEEccccccccEEEEcccccccEEEEEEEcccccccccccccEEEEEcccccEEEEEcccccccccccccccccEEEEccccccccccccEEEEEEEcccccEEEEEEEEEcccccEEEEccccccccccccEEEEEEHHHHccccccccccEEEEEEEccEEEEcccccEEEEcccccccccccEEEEEEcccEEEEEEEccccEEEEEEcccccEEEcccccccccccccccEEEEEEEEEcccccccccccccccccccEEEEEccccccccccccEEEEccEEEccccccccccccEEEEEEEccccEEEEEEEEccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccccccccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEccccccccHHHHHHcccEEEEEcHHHHHHHcccccccEEEEcccEEccccEEEEcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccccccEEEEccHcHHHccccHHEEEEHHEEEccccccccccEEEEEcccccccccccEEEEEEEEEEEccccccccEEEEEEEccccccccccEEEEEccccEEEEcccEEccEEEEccccEEEcccHHHHHHHHHHHcccccEEEcccccHHHHcccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEEccccccccccEEEEEEEEccccccccEEEEEEccccccHHHHHHccEEEEEEEEcccccccccEEEEEEccccccEEEEccccccccEEEEEcccccccEEEEEEccccccccccccEEEEEEcccEEEEEEccEEEEEcccccEEEEEEEEEEcccHHHccccccEEEEEEccccccEEEEEEEEcccccHHEEEcccHHHHccccccHHHEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEccccEEEccHHHHHHcccccEEEEEEEccccEEEEEEEHHHHHHHHHHHccccccccccccEEEEEEEEEccccccccEccccccccEEEEEEEccccccHccEEEEEEccEEEEccccccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccEccccHHHHHHHHccccccccEEEEEEccccccccccccccHHHHccccccccccccccccccEEEEEEEEccHcHcEEEccccccHHHHHHHHHHHHcEEEccHHHHHHHcHHcccccEEccccEEccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhdhydaekdcgvdqpillvghknikplvisTDVARVHKVVKKkgamwksgqKVKLLKGAYagihnndvYATIEYFVIEglqgdaggeariicrplavpdekgcvlAVNNgnaslhigsslslpigvidsekcvpvnknvWDQQLEKYRQKSPSTIELLKETQCqeleidgvlpssaiagqnppreivavvrpasfisssasKNLVQKYIVKNSSEMLMEVKFKcedenledvvplytarvapssrkgyqgLYIFEVGckfpklfqnagaytfsfhLTETSCKSCEKKVLVKgssevgkwklldtkerpelrvrvgsflpplsvacydiydnripfeskpqflvkikpskiikvedklkwnlspdkltlNIQDILVASSkldeirpdyrATLVisskdkpvsvsipcrvtpgslknvavhpqnlgillpGSVIKMLKLEMFDAFYNNVKKGLEVELnvdgfciedqlglrrkvdgygcidlsgllkvkagygknvslsvlsdngvifkqdfQTEKRELRVisgvpecctvgsqledITFEivdskgavdvtihdddksgqshtltiksdvintENSIRYAFRqgrctvpaislpqnegcfcfVATHSQYTELNISIkvpivrapklesddirtpcsdgkvfllegpspikhvgnhmVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVsvepyslltKEEIIRRIKSIYQSAASVICcstkeflcskprsnfmedvvgPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKyeqdgtidrKCALHATAAALGKSIDGRYLVICLegirpysgkfgsndpqrklalpaptlpkgnipagfVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIrhgavsldggilkedgiislgcgnpticfpivrtRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK
Flexible Loop (DISEMBL)
mhdhydaekdcgvdqPILLVGHknikplvistdvaRVHKVVkkkgamwksgqkvKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLpssaiagqnPPREIVAVVRPasfisssasknlvQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTarvapssrkgYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLvkgssevgkwklldtkerpelrvrvgsflpplsVACYDIYDNripfeskpqflvkikpskiikvedklkwnlspdkltlnIQDILVasskldeirpDYRATlvisskdkpvsvsIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSlsvlsdngviFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIhdddksgqshtltiksdvinteNSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLegpspikhvgnHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSklqvsvepyslltKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAalgksidgRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKlknsedkfnsfmdlwqtslk
Low Complexity Region (SEG)
MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK
Disordered region (IsUnstruct)
*********DCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKY*******IELLKETQCQELEIDGVLP***********EIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHD*******HTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKF**************TLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLI*********************************
Disordered Region (DISOPRED)
****YDA*KDCGVDQPILLVGHKNIKPLVISTDVARVHKVVK***********VKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQ***********IELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPA**************YIVKNSSEMLME*******************RVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCT*****LPQNEGCFCFVATHSQYTELNISIKVPIVRAP*******************************************************************************************************ASVICC****************DVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDP***LALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICF**********************************************************LWQT***
Disordered Region (DISEMBL)
********KDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK
Disordered Region (DISPRO)
*********DCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAIAGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVEDKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCxxxxxxxxxxxxxxxxxxxxxxxxxxxxVEPYSLLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIxxxxxxxxxxxxxxxxxxxxxxxxFNSFMDLWQTSLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1010
302143908	1718	unnamed protein product [Vitis vinifera]	0.976	0.573	0.495	0.0
334187894	1598	gamma-irradiation and mitomycin c induce	0.971	0.613	0.427	0.0
297812599	1607	predicted protein [Arabidopsis lyrata su	0.969	0.609	0.439	0.0
10177088	1634	unnamed protein product [Arabidopsis tha	0.968	0.598	0.415	0.0
359490805	1887	PREDICTED: uncharacterized protein LOC10	0.689	0.368	0.502	0.0
147779006	1117	hypothetical protein VITISV_039356 [Viti	0.646	0.584	0.498	0.0
357436467	1009	hypothetical protein MTR_1g007990 [Medic	0.687	0.687	0.449	1e-160
357141225	1303	PREDICTED: uncharacterized protein LOC10	0.893	0.692	0.314	1e-110
10177087	1335	unnamed protein product [Arabidopsis tha	0.563	0.426	0.355	8e-97
357436479	1675	hypothetical protein MTR_1g008050 [Medic	0.473	0.285	0.406	2e-90

>gi|302143908|emb|CBI23013.3| unnamed protein product [Vitis vinifera]

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1051 (49%), Positives = 689/1051 (65%), Gaps = 65/1051 (6%)

Query: 1    MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGA 60
            MHD YD E D G DQP+++VG  N K L IS+DV RVH+++++KG  WK GQK+K+LKGA
Sbjct: 673  MHDLYDEEIDSGEDQPVIVVGSLNKKQLGISSDVVRVHEIIRRKGKSWKRGQKIKVLKGA 732

Query: 61   YAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSS 120
              G H ++V+AT+EY ++EG QGDAGGEAR+ICRPL++PDE GC+LAV++G AS     S
Sbjct: 733  CPGCHKSNVFATLEYILLEGFQGDAGGEARLICRPLSLPDEDGCILAVDDGAASFDCRGS 792

Query: 121  LSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLPSSAI-- 178
            LSLPI VIDS KC+ V  + W  QLEK RQK+PSTI++L E  C ELE+DG LP  A   
Sbjct: 793  LSLPISVIDSGKCLAVESSEWLFQLEKQRQKAPSTIDILSERHCLELEVDGALPVDAPVH 852

Query: 179  AGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSSEMLMEVKFKCEDENLEDVVPLYT 238
            AGQ PP+EIVAVVRPASF+S                    MEVK     +  +D   +Y+
Sbjct: 853  AGQVPPKEIVAVVRPASFLS--------------------MEVKLM---DGTKDTKHIYS 889

Query: 239  ARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVG 298
              V PSSR G+ GLYIF +GCKFP+LFQ AG YTF+  L  +S KSCEK+VLVK   +V 
Sbjct: 890  KCVTPSSRNGFHGLYIFPLGCKFPQLFQKAGVYTFTVFLKGSSFKSCEKRVLVKALPKVS 949

Query: 299  KWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVE-DK 357
             W+     +     VR GS LPP S+ACYD Y+N+IPF S P+F++K   +  +  + DK
Sbjct: 950  SWRFSSDIQNTVYSVRAGSCLPPFSIACYDSYENQIPFTSIPEFIIKSNWNGGVLADFDK 1009

Query: 358  LKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSL-KN 416
            +K  LS D LTL ++D+L+ SS LD+IRP Y  TLV+  +D+  S+S+ C V PG L + 
Sbjct: 1010 MKLELSSDNLTLKVKDVLIESSDLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLERA 1069

Query: 417  VAVHPQNLGILLPGSVIKMLKLE-----------------------------MFDAFYNN 447
            +A  P +   LLPG VI+ L LE                             MFDA+ N+
Sbjct: 1070 IAQPPVSDNQLLPGCVIEELVLEVSSHIVIILPHDDQFIHTIVLCMLFLPLFMFDAYGNH 1129

Query: 448  VKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIF 507
             ++GLEV+ NVDGFC +D  GL+RKVD  GCIDLSGLL+V  GYGKNVSLSVLS N V+F
Sbjct: 1130 AREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVVF 1189

Query: 508  KQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIK 567
            KQ+ QTEKRELR  S VP+ C  GSQLE+I FEI++SKG VD T+H+++K GQ HTLTI 
Sbjct: 1190 KQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDETVHEEEKHGQFHTLTIM 1249

Query: 568  SDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLE 627
            SD    + S+R+AFR GRC +P I LP+ +G F F+A HS + EL++++KV +V   K++
Sbjct: 1250 SDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPELSLAVKVSVVEVLKVK 1309

Query: 628  SDDIRTPCSDGKVFLLEGPSPIKHVGNHMV-PIMKIVNELESEVRNYGLCIGRHEKALKL 686
             +D++    +  + LL+     +HV N +V  +M    E+E ++   GL IG +E+ L+L
Sbjct: 1310 QEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDICKIGLFIGDNERKLEL 1369

Query: 687  LNDQKMEVEEVLSKLQVSVEPYS-------LLTKEEIIRRIKSIYQSAASVICCSTKEFL 739
            L+ QK ++E+ + KLQ SVE  S       L  KE ++R I+   +SAA+  C  ++E  
Sbjct: 1370 LHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKKDKSAAAFFCNLSREIP 1429

Query: 740  CSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQD 799
               P S  M+D+VG VAL+ TV  N+L R LAEYLGE QMLA+VCRS+EAA  LEKYE D
Sbjct: 1430 FQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVVCRSYEAASKLEKYEWD 1489

Query: 800  GTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNI 859
            G +DR+ AL+A A   GK I+ R+LVICLE IRPY G F  NDPQRKL +P P LP G +
Sbjct: 1490 GKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDPQRKLNIPNPILPTGEM 1549

Query: 860  PAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG 919
            P GF+GYAVNMV+L+ HH+  RT+AG+GLRETL Y LFG+LQVY+TR+DM +A    RHG
Sbjct: 1550 PPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVYQTREDMKKACFYARHG 1609

Query: 920  AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQE 979
            AVSLDGGI+K +G+IS GC  P I FP+     S +++  L+ IEEK+  L  +   I +
Sbjct: 1610 AVSLDGGIMKGNGVISFGCREPQIWFPVANLE-SPKNVRILEVIEEKRTSLRLVHNEIGK 1668

Query: 980  SNKALEKDLEKLKNSEDKFNSFMDLWQTSLK 1010
              K + K  +KL+    +    MD  +  +K
Sbjct: 1669 LTKIINKAQKKLQKKISRCRKLMDRLEPCMK 1699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187894|ref|NP_197816.3| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana] gi|332005896|gb|AED93279.1| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]

 Score =  816 bits (2107), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/1044 (42%), Positives = 660/1044 (63%), Gaps = 63/1044 (6%)

Query: 1    MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGA 60
            MH+ +D E   G+D+ +L+VG  + K L I  D  RVHK V++K   WK GQ +K+L+GA
Sbjct: 575  MHNTHDEEAASGLDEAVLIVGSLDKKALGILRDAVRVHKEVRRKEKTWKRGQNIKILRGA 634

Query: 61   YAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSS 120
            YAGIHNN+VYATI+YF+IEG + +AGG+ RI+CRP+  P+ +GC L++ +G + L + SS
Sbjct: 635  YAGIHNNNVYATIDYFLIEGFEDEAGGDTRILCRPIDRPENEGCKLSIIDGISKLEVQSS 694

Query: 121  LSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLP--SSAI 178
            LSLPI +IDS KC+PV+ N W+++L+K ++K+PS I+LL E  C+EL+IDG LP  +S  
Sbjct: 695  LSLPITIIDSGKCLPVDANEWNRKLDKQQEKAPSKIDLLDERDCRELKIDGELPIGNSVR 754

Query: 179  AGQNPPREIVAVVRPASFISSSASKNLVQKYIVK-NSSEMLMEVKFKCEDENLEDVVPLY 237
            AG+ PP++IVAVVRPA F S + SK L QK IVK +  EM+M VK K  D+N+       
Sbjct: 755  AGKAPPKQIVAVVRPACFTSLTPSKKLDQKNIVKMDGEEMVMVVKLKSSDKNIS------ 808

Query: 238  TARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEV 297
            + R+ P+SRKG  GLYIF +G KFP LF+ AG Y FSF +  +    C K V+V+ SS+ 
Sbjct: 809  SQRLFPTSRKGISGLYIFSLGSKFPNLFKKAGTYNFSFSIGNSI--KCNKTVVVRPSSKA 866

Query: 298  GKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIK--PSKIIKVE 355
             +W+L D  E     VRVGS LPP  +AC+D Y N+IPF S P   V+++  P  +IK+ 
Sbjct: 867  ARWELDDNLESLPCNVRVGSSLPPFRIACFDKYKNKIPFTSVPSLEVELEASPGFLIKI- 925

Query: 356  DKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLK 415
            DKL+ NL  D L L I+++LV + +LD+IRP+Y ATL I + D P SVS+PC+V PG LK
Sbjct: 926  DKLETNLINDGLILKIENMLVETDELDQIRPNYEATLEIRAMDNPFSVSVPCKVNPGPLK 985

Query: 416  NVAVH-PQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVD 474
             VAV+ P+ L  LLP S ++   LE+FD + N+V +G +V +++DG+ IED +G+ RKVD
Sbjct: 986  RVAVNNPKALENLLPDSTVEDFILELFDGYNNHVAEGTDVLIHIDGYRIEDWMGINRKVD 1045

Query: 475  GYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQL 534
              GCI+LSG+LKV  GYGK+VSLSV+S N VIF ++ Q ++R+LR+++ +P+CCT G+ L
Sbjct: 1046 SRGCINLSGILKVTEGYGKSVSLSVMSGNEVIFCKESQIDERQLRLVTELPDCCTAGTNL 1105

Query: 535  EDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLP 594
             ++ F++ +  G++D +IH D+KSG  HT++I+SD  + E++IRYAF  G C V ++SLP
Sbjct: 1106 MNLIFQVTELDGSLDTSIHHDEKSGCFHTMSIESDSSSVESAIRYAFVHGSCKVSSLSLP 1165

Query: 595  QNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDD------------------------ 630
            +NEG F     HS+Y EL +SIK+ +  AP  E ++                        
Sbjct: 1166 ENEGVFSCRVFHSRYPELQMSIKIQVTSAPTSEREESGYSTPHSKTTPPPESGIPSITNP 1225

Query: 631  IRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQ 690
              TPCS   V  +   S        ++ + +   +L+ ++          E+ LK L  Q
Sbjct: 1226 WPTPCSQFGVLAIRSSSLALSSETSLMDMAQYTEDLKEKINIDEERRVELEERLKCLQAQ 1285

Query: 691  KMEVEEVLSKLQVSVEPYS------LLTKEEIIRRIKSIYQ-SAASVICCSTKEFLCSKP 743
            +   E+  S+LQ S+EP        L TKE ++++I+  +  +AASV CC  ++     P
Sbjct: 1286 REHAEQECSRLQASLEPLGAPFPECLSTKESMMKQIEEKHHDTAASVFCCLYRK--APPP 1343

Query: 744  RSNFMED--VVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGT 801
            RS F+    + G VAL+G+V +  LSR L+EYLG+  ML+LVC+S +     ++Y +   
Sbjct: 1344 RSLFLSQKGMFGVVALLGSVASTSLSRVLSEYLGKDTMLSLVCKSSQFGPKSDEYRK--- 1400

Query: 802  IDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPA 861
                    + AA+LG+SI  R+LVICL+  RP+      NDPQ++LA+  P LP G+   
Sbjct: 1401 ------FQSEAASLGRSITNRFLVICLDATRPWRNGLVRNDPQKRLAMDNPYLPNGDPIP 1454

Query: 862  GFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-A 920
            GF GYAVNM++L    + I++S+G GLRETL Y +F +LQVY+T + +  A   I  G A
Sbjct: 1455 GFKGYAVNMIDLASEELDIQSSSGYGLRETLFYGVFRELQVYETAEHLEAALPHINGGDA 1514

Query: 921  VSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQES 980
            VSLDG I +E+G I  GC  P + FPI  T    +++  L+   +KK + +   +++ E 
Sbjct: 1515 VSLDGVIARENGFIYSGCCTPEVHFPITVTERQEKALVQLEITRDKKRKTE---EMMTEE 1571

Query: 981  NKALEKDLEKLKNSEDKFNSFMDL 1004
            N++L + ++KLK + +K+ +F  +
Sbjct: 1572 NRSLRRLVKKLKKANEKYQNFTAM 1595

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812599|ref|XP_002874183.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297320020|gb|EFH50442.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/1049 (43%), Positives = 660/1049 (62%), Gaps = 70/1049 (6%)

Query: 1    MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGA 60
            MH+ +D E   G D+ +L+VG  + K L I  D  RVHK V +KG  WK GQ +K+L+GA
Sbjct: 571  MHNTHDEEAASGADEAVLIVGSLDKKALGILRDAVRVHKEVTRKGMSWKRGQNIKILRGA 630

Query: 61   YAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSS 120
            YAG+HNN+VYATI+YF+IEG + +AGG+ RI+CRP+  P+ +GC L++ +G + L + SS
Sbjct: 631  YAGVHNNNVYATIDYFLIEGFEDEAGGDTRILCRPIDRPENEGCKLSIIDGISKLEVRSS 690

Query: 121  LSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLP--SSAI 178
            LSLPI +IDS KC+ V+ N W+++L+K ++K+PS I+LL E  C+EL+IDG LP   S  
Sbjct: 691  LSLPITIIDSGKCLHVDANEWNRKLDKQQEKAPSKIDLLDERDCRELKIDGELPVGDSVR 750

Query: 179  AGQNPPREIVAVVRPASFISSSASKNLVQKYIVK-NSSEMLMEVKFKCEDENLEDVVPLY 237
            AG+  P++IVAVVRPA F SS+ SK L QK+IVK +  EM+M V  K  D+N++ V    
Sbjct: 751  AGKATPKQIVAVVRPACFTSSTPSKKLDQKHIVKMDGEEMVMVVTLKSSDKNVKSVC--- 807

Query: 238  TARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEV 297
            + R+ P+SRKG  GLYIF +G KFP LF+ AG Y FSF +   +   C K V+V+ SS+ 
Sbjct: 808  SQRMFPTSRKGISGLYIFPLGSKFPNLFKKAGTYKFSFSIG--NLIKCNKTVVVRPSSKA 865

Query: 298  GKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIK--PSKIIKVE 355
             KW+L D  E     VRVGS LPP  +AC+D Y N+I F S P   V+++  P  +IK+ 
Sbjct: 866  AKWELDDNLESLTCNVRVGSSLPPFRIACFDEYKNQILFSSVPSLEVELEANPGFLIKI- 924

Query: 356  DKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLK 415
            DK++ NL  D   L I+++LV +  LD+IRP+Y+ATL I + DKP SVS+PC+V PG LK
Sbjct: 925  DKIETNLINDGSILKIENMLVETDGLDQIRPNYKATLEIRAMDKPFSVSVPCKVNPGPLK 984

Query: 416  NVAVH-PQNLGILLPGSVIKMLKLEMFD----AFYNNVKK-----GLEVELNVDGFCIED 465
             VAV+ P  L  LLP S ++ L LE+++     F N  +      G +V +N+DG+ IED
Sbjct: 985  RVAVNNPDALENLLPDSTVEDLILEVYNIGLCTFLNRNQVFPSNLGTDVLINIDGYIIED 1044

Query: 466  QLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVP 525
             +G+ RKVDG GCIDLSG+LKV  GYGK+VSLSV+S N VIF+++ Q E+RELR+++ +P
Sbjct: 1045 WMGINRKVDGRGCIDLSGILKVTEGYGKSVSLSVMSGNEVIFRKESQIEERELRLVTELP 1104

Query: 526  ECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGR 585
            +CC  GS L ++ F++ DS G++D  IH D+KSG  HT+ I+SD    E++IRYAF  G 
Sbjct: 1105 DCCAAGSNLVNLIFQVTDSDGSLDTRIHHDEKSGCFHTMCIESDSSIVESTIRYAFVHGS 1164

Query: 586  CTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDI-------------- 631
            C VP++SLP+NEG F +   HS+Y EL++S+KV    AP  E D+I              
Sbjct: 1165 CKVPSLSLPENEGVFSYRVFHSRYPELHMSVKVTC--APTFERDEIGYSTPYSTTPPPES 1222

Query: 632  ---------RTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEK 682
                      TPCS   V  +   S        ++ I +    L+  + +        +K
Sbjct: 1223 GMPSITNPSSTPCSQFGVLAIRSSSLALCSQTGLMDIAQYTESLKETINSEEELRVELDK 1282

Query: 683  ALKLLNDQKMEVEEVLSKLQVSVEPYS------LLTKEEIIRRIKSIYQ-SAASVICCST 735
             LK L DQ    E+  S+LQ S+EP        L TKE ++++I+  +  +AASV CC  
Sbjct: 1283 RLKCLQDQHEHAEQECSRLQASLEPLGASFPECLSTKELMMKQIEDKHHDTAASVFCCLY 1342

Query: 736  KEFLCSKPRSNFM--EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFAL 793
            ++     P+S F+  + + G VAL+G+V +  LSR L+EYLG+  ML+LVC+S +     
Sbjct: 1343 RK--APPPQSLFLSKKGMFGLVALLGSVASTSLSRVLSEYLGKDTMLSLVCKSSQFGPKS 1400

Query: 794  EKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPT 853
            ++Y +         L + AA+LG+SI  R+LVICL+ IRP+      NDPQ++LA+  P 
Sbjct: 1401 DEYRK---------LQSEAASLGRSITNRFLVICLDAIRPWRNGLVKNDPQKRLAMDNPY 1451

Query: 854  LPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAH 913
            LP G+   GF GYAVNM++L    ++I++S+G GLRETL Y +FG+LQVY+T + +  A 
Sbjct: 1452 LPNGDPILGFKGYAVNMIDLSSEELNIQSSSGYGLRETLFYGVFGELQVYETGEHLEAAL 1511

Query: 914  TCIRHG-AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDG 972
              I  G AVSLDG I +E+G I  GC  P I FPI  T    +++  L+ I +KK +++ 
Sbjct: 1512 PHINGGDAVSLDGVIARENGFIYSGCCTPEIHFPITVTERQEKALVQLEIIRDKKRKVE- 1570

Query: 973  IMQLIQESNKALEKDLEKLKNSEDKFNSF 1001
              Q++ E N  L K ++KLK + +K+  F
Sbjct: 1571 --QMMTEENCKLRKVVKKLKKANEKYQHF 1597

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177088|dbj|BAB10394.1| unnamed protein product [Arabidopsis thaliana]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1068 (41%), Positives = 661/1068 (61%), Gaps = 90/1068 (8%)

Query: 1    MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGA 60
            MH+ +D E   G+D+ +L+VG  + K L I  D  RVHK V++K   WK GQ +K+L+GA
Sbjct: 584  MHNTHDEEAASGLDEAVLIVGSLDKKALGILRDAVRVHKEVRRKEKTWKRGQNIKILRGA 643

Query: 61   YAGIHNNDVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGNASLHIGSS 120
            YAGIHNN+VYATI+YF+IEG + +AGG+ RI+CRP+  P+ +GC L++ +G + L + SS
Sbjct: 644  YAGIHNNNVYATIDYFLIEGFEDEAGGDTRILCRPIDRPENEGCKLSIIDGISKLEVQSS 703

Query: 121  LSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGVLP--SSAI 178
            LSLPI +IDS KC+PV+ N W+++L+K ++K+PS I+LL E  C+EL+IDG LP  +S  
Sbjct: 704  LSLPITIIDSGKCLPVDANEWNRKLDKQQEKAPSKIDLLDERDCRELKIDGELPIGNSVR 763

Query: 179  AGQNPPREIVAVVRPASFISSSASKNLVQKYIVK-NSSEMLMEVKFKCEDENLEDVVPLY 237
            AG+ PP++IVAVVRPA F S + SK L QK IVK +  EM+M VK K  D+N+       
Sbjct: 764  AGKAPPKQIVAVVRPACFTSLTPSKKLDQKNIVKMDGEEMVMVVKLKSSDKNIS------ 817

Query: 238  TARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEV 297
            + R+ P+SRKG  GLYIF +G KFP LF+ AG Y FSF +  +    C K V+V+ SS+ 
Sbjct: 818  SQRLFPTSRKGISGLYIFSLGSKFPNLFKKAGTYNFSFSIGNSI--KCNKTVVVRPSSKA 875

Query: 298  GKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIK--PSKIIKVE 355
             +W+L D  E     VRVGS LPP  +AC+D Y N+IPF S P   V+++  P  +IK+ 
Sbjct: 876  ARWELDDNLESLPCNVRVGSSLPPFRIACFDKYKNKIPFTSVPSLEVELEASPGFLIKI- 934

Query: 356  DKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSLK 415
            DKL+ NL  D L L I+++LV + +LD+IRP+Y ATL I + D P SVS+PC+V PG LK
Sbjct: 935  DKLETNLINDGLILKIENMLVETDELDQIRPNYEATLEIRAMDNPFSVSVPCKVNPGPLK 994

Query: 416  NVAV-HPQNLGILLPGSVIK---------------------------MLKLEMFDAFYNN 447
             VAV +P+ L  LLP S ++                           ++ +++FD + N+
Sbjct: 995  RVAVNNPKALENLLPDSTVEDFILEVYNIGLCTLSNRNQLFLRIKLTIIFMQLFDGYNNH 1054

Query: 448  VKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIF 507
            V +G +V +++DG+ IED +G+ RKVD  GCI+LSG+LKV  GYGK+VSLSV+S N VIF
Sbjct: 1055 VAEGTDVLIHIDGYRIEDWMGINRKVDSRGCINLSGILKVTEGYGKSVSLSVMSGNEVIF 1114

Query: 508  KQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIK 567
             ++ Q ++R+LR+++ +P+CCT G+ L ++ F++ +  G++D +IH D+KSG  HT++I+
Sbjct: 1115 CKESQIDERQLRLVTELPDCCTAGTNLMNLIFQVTELDGSLDTSIHHDEKSGCFHTMSIE 1174

Query: 568  SDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLE 627
            SD  + E++IRYAF  G C V ++SLP+NEG F     HS+Y EL +SIK+ +  AP  E
Sbjct: 1175 SDSSSVESAIRYAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSIKIQVTSAPTSE 1234

Query: 628  SDD------------------------IRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIV 663
             ++                          TPCS   V  +   S        ++ + +  
Sbjct: 1235 REESGYSTPHSKTTPPPESGIPSITNPWPTPCSQFGVLAIRSSSLALSSETSLMDMAQYT 1294

Query: 664  NELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS------LLTKEEII 717
             +L+ ++          E+ LK L  Q+   E+  S+LQ S+EP        L TKE ++
Sbjct: 1295 EDLKEKINIDEERRVELEERLKCLQAQREHAEQECSRLQASLEPLGAPFPECLSTKESMM 1354

Query: 718  RRIKSIYQ-SAASVICCSTKEFLCSKPRSNFMED--VVGPVALIGTVCTNKLSRTLAEYL 774
            ++I+  +  +AASV CC  ++     PRS F+    + G VAL+G+V +  LSR L+EYL
Sbjct: 1355 KQIEEKHHDTAASVFCCLYRK--APPPRSLFLSQKGMFGVVALLGSVASTSLSRVLSEYL 1412

Query: 775  GEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPY 834
            G+  ML+LVC+S +     ++Y +           + AA+LG+SI  R+LVICL+  RP+
Sbjct: 1413 GKDTMLSLVCKSSQFGPKSDEYRK---------FQSEAASLGRSITNRFLVICLDATRPW 1463

Query: 835  SGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLY 894
                  NDPQ++LA+  P LP G+   GF GYAVNM++L    + I++S+G GLRETL Y
Sbjct: 1464 RNGLVRNDPQKRLAMDNPYLPNGDPIPGFKGYAVNMIDLASEELDIQSSSGYGLRETLFY 1523

Query: 895  RLFGKLQVYKTRKDMIEAHTCIRHG-AVSLDGGILKEDGIISLGCGNPTICFPIVRTRIS 953
             +F +LQVY+T + +  A   I  G AVSLDG I +E+G I  GC  P + FPI  T   
Sbjct: 1524 GVFRELQVYETAEHLEAALPHINGGDAVSLDGVIARENGFIYSGCCTPEVHFPITVTERQ 1583

Query: 954  TQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSF 1001
             +++  L+   +KK + +   +++ E N++L + ++KLK + +K+ +F
Sbjct: 1584 EKALVQLEITRDKKRKTE---EMMTEENRSLRRLVKKLKKANEKYQNF 1628

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490805|ref|XP_002272676.2| PREDICTED: uncharacterized protein LOC100252197 [Vitis vinifera]

 Score =  682 bits (1760), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/707 (50%), Positives = 479/707 (67%), Gaps = 11/707 (1%)

Query: 314  RVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPSKIIKVE-DKLKWNLSPDKLTLNIQ 372
            R GS LPP S+ACYD Y+N+IPF S P+F++K   +  +  + DK+K  LS D LTL ++
Sbjct: 1163 RAGSCLPPFSIACYDSYENQIPFTSIPEFIIKSNWNGGVLADFDKMKLELSSDNLTLKVK 1222

Query: 373  DILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSL-KNVAVHPQNLGILLPGS 431
            D+L+ SS LD+IRP Y  TLV+  +D+  S+S+ C V PG L + +A  P +   LLPG 
Sbjct: 1223 DVLIESSDLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLERAIAQPPVSDNQLLPGC 1282

Query: 432  VIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGY 491
            VI+ L LEMFDA+ N+ ++GLEV+ NVDGFC +D  GL+RKVD  GCIDLSGLL+V  GY
Sbjct: 1283 VIEELVLEMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVDDRGCIDLSGLLRVTTGY 1342

Query: 492  GKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVT 551
            GKNVSLSVLS N V+FKQ+ QTEKRELR  S VP+ C  GSQLE+I FEI++SKG VD T
Sbjct: 1343 GKNVSLSVLSGNKVVFKQELQTEKRELRAASIVPQSCAAGSQLENIVFEIINSKGEVDET 1402

Query: 552  IHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTE 611
            +H+++K GQ HTLTI SD    + S+R+AFR GRC +P I LP+ +G F F+A HS + E
Sbjct: 1403 VHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLPRKQGDFTFLAAHSCHPE 1462

Query: 612  LNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMV-PIMKIVNELESEV 670
            L++++KV +V   K++ +D++    +  + LL+     +HV N +V  +M    E+E ++
Sbjct: 1463 LSLAVKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAPRHVENSLVESLMNDEKEIEDDI 1522

Query: 671  RNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS-------LLTKEEIIRRIKSI 723
               GL IG +E+ L+LL+ QK ++E+ + KLQ SVE  S       L  KE ++R I+  
Sbjct: 1523 CKIGLFIGDNERKLELLHKQKGDIEQSIEKLQASVEYDSFNNHRGYLSKKESVMRCIEKK 1582

Query: 724  YQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALV 783
             +SAA+  C  ++E     P S  M+D+VG VAL+ TV  N+L R LAEYLGE QMLA+V
Sbjct: 1583 DKSAAAFFCNLSREIPFQDPVSQLMKDIVGVVALLATVRINRLGRMLAEYLGEDQMLAVV 1642

Query: 784  CRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDP 843
            CRS+EAA  LEKYE DG +DR+ AL+A A   GK I+ R+LVICLE IRPY G F  NDP
Sbjct: 1643 CRSYEAASKLEKYEWDGKVDREHALYAVAKTFGKPINDRFLVICLENIRPYIGGFQDNDP 1702

Query: 844  QRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVY 903
            QRKL +P P LP G +P GF+GYAVNMV+L+ HH+  RT+AG+GLRETL Y LFG+LQVY
Sbjct: 1703 QRKLNIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTRTTAGHGLRETLFYCLFGELQVY 1762

Query: 904  KTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQI 963
            +TR+DM +A    RHGAVSLDGGI+K +G+IS GC  P I FP+     S +++  L+ I
Sbjct: 1763 QTREDMKKACFYARHGAVSLDGGIMKGNGVISFGCREPQIWFPVANLE-SPKNVRILEVI 1821

Query: 964  EEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDLWQTSLK 1010
            EEK+  L  +   I +  K + K  +KL+    +    MD  +  +K
Sbjct: 1822 EEKRTSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKLMDRLEPCMK 1868

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779006|emb|CAN73471.1| hypothetical protein VITISV_039356 [Vitis vinifera]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/670 (49%), Positives = 455/670 (67%), Gaps = 17/670 (2%)

Query: 356  DKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPVSVSIPCRVTPGSL- 414
            DK+K  LS D LTL ++D+L+ SS LD+IRP Y  TLV+  +D+  S+S+ C V PG L 
Sbjct: 77   DKMKLELSSDNLTLKVKDVLIESSDLDKIRPSYATTLVLCPRDELPSISVACEVNPGPLE 136

Query: 415  KNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVD 474
            + +A  P +   LLPG VI+ L LEMFDA+ N+ ++GLEV+ NVDGFC +D  GL+RKVD
Sbjct: 137  RAIAQPPVSDNQLLPGCVIEELVLEMFDAYGNHAREGLEVQFNVDGFCFQDHNGLKRKVD 196

Query: 475  GYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQL 534
              GCIDLSGLL+V  GYGKNVSLSVLS N V+FKQ+ QTEKRELR  S VP+ C  GSQL
Sbjct: 197  DRGCIDLSGLLRVTTGYGKNVSLSVLSGNKVVFKQELQTEKRELRAASIVPQSCAAGSQL 256

Query: 535  EDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLP 594
            E+I FEI++SKG VD T+H+++K GQ HTLTI SD    + S+R+AFR GRC +P I LP
Sbjct: 257  ENIVFEIINSKGEVDETVHEEEKHGQFHTLTIMSDSFYLDGSVRFAFRNGRCIIPTIPLP 316

Query: 595  QNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGN 654
            + +G F F+A HS + EL++++KV +V   K++ +D++    +  + LL+     +HV N
Sbjct: 317  RKQGDFTFLAAHSCHPELSLAVKVSVVEVLKVKQEDVQLQYPNENMLLLQDSPAPRHVEN 376

Query: 655  HMV-PIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS---- 709
             +V  +M    E+E ++   GL IG +E+ L+LL+ QK ++E+ + KLQ SVE  S    
Sbjct: 377  SLVESLMNDEKEIEDDICKIGLFIGDNERKLELLHKQKGDIEQSIEKLQASVEYDSFNNH 436

Query: 710  ---LLTKEEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKL 766
               L  KE ++R I+   +SAA+  C  ++E     P S  M+D+VG VAL+ TV  N+L
Sbjct: 437  RGYLSKKESVMRCIEKKDKSAAAFFCNLSREIPFQDPVSQLMKDIVGVVALLATVRINRL 496

Query: 767  SRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI 826
             R LAEYLGE QMLA+VCRS+EAA  LEKYE DG +DR+ AL+A A   GK I+ R+LVI
Sbjct: 497  GRMLAEYLGEDQMLAVVCRSYEAASKLEKYEWDGKVDREHALYAVAKTFGKPINDRFLVI 556

Query: 827  CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGN 886
            CLE IRPY G F  NDPQRKL +P P LP G +P GF+GYAVNMV+L+ HH+  RT+AG+
Sbjct: 557  CLENIRPYIGGFQDNDPQRKLNIPNPILPTGEMPPGFLGYAVNMVDLESHHLLTRTTAGH 616

Query: 887  GLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFP 946
            GLRETL Y LFG+LQVY+TR+DM +A    RHGAVSLDGGI+K +G+IS GC  P I FP
Sbjct: 617  GLRETLFYCLFGELQVYQTREDMKKACFYARHGAVSLDGGIMKGNGVISFGCREPQIWFP 676

Query: 947  IVRTRISTQSIEALKQIEEKKL-------ELDGIMQLIQESNKALEKDLEKLKNSEDKFN 999
            +     S +++  L+ IEEK+        E+  + ++I ++ K L+K + + +   D+  
Sbjct: 677  VANLE-SPKNVRILEVIEEKRTSLRLVHNEIGKLTKIINKAQKKLQKKISRCRKLMDRLE 735

Query: 1000 SFMDLWQTSL 1009
             F ++   S+
Sbjct: 736  PFFEVENLSI 745

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436467|ref|XP_003588509.1| hypothetical protein MTR_1g007990 [Medicago truncatula] gi|355477557|gb|AES58760.1| hypothetical protein MTR_1g007990 [Medicago truncatula]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 323/719 (44%), Positives = 457/719 (63%), Gaps = 25/719 (3%)

Query: 284 SCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQ-F 342
           S +K++ VK      K+KLL   +  EL VRVGS  P L++ACYDI+DNR PF+  P   
Sbjct: 258 SADKRMTVKRIHCALKYKLLTNDQCQELDVRVGSTFPSLAIACYDIHDNRAPFKQIPDDV 317

Query: 343 LVKIKPSKIIKVE-DKLKWNLSPDKLTLNIQDILVASSKLDEIRPDYRATLVISSKDKPV 401
            V+++ +K +  +    K  LS DK+TL I D ++ SS+LD+IRP YR TL+I+S++ P 
Sbjct: 318 TVELQAAKDLYFKVHGAKTRLSFDKMTLKIMDAMITSSELDKIRPSYRTTLIIASENVPF 377

Query: 402 SVSIPCRVTPGSLKNVAVHPQ-NLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNVDG 460
           SVS PCRV+PG L+   + P      LLPG + K L  EMFD + N+V +G+EV + ++G
Sbjct: 378 SVSFPCRVSPGYLEYAKLKPNIREDQLLPGFIFKELAFEMFDTYRNHVSEGVEVNIFLEG 437

Query: 461 FCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKRELRV 520
           F   +      KVD  G IDL G LK+ AG+G+N S+SV+ +    F+Q+F   +R LR+
Sbjct: 438 FERLNNCSTVYKVDDKGKIDLGGQLKLTAGFGENASISVMFEGEPKFRQEFSLARRILRI 497

Query: 521 ISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIRYA 580
            S VP+ C  G QLE+I FEIV++ G VD+ IH+DD+  Q H LTIKS + N + SIRY 
Sbjct: 498 ASEVPDFCATGGQLENIEFEIVNADGDVDMKIHNDDQECQFHMLTIKSGLSNADESIRYT 557

Query: 581 FRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPKLESDDIRTPCSDGKV 640
           F+ GRCTVP+I +P+ EG FCF A++SQYTEL +  KV +++   ++ D  +    D   
Sbjct: 558 FKHGRCTVPSIRVPEIEGSFCFEASYSQYTELCLIRKVQVIKMSNVK-DVAQHLSPDKNT 616

Query: 641 FLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEVLSK 700
           F L+  S + H  N M+ ++    +   ++   G  I  +E  LK  NDQ+ E  + L  
Sbjct: 617 FPLKELSTLTHDNNLMISVLNSDGKKFDDICQLGQKINEYEDYLKKFNDQEDETHKELLM 676

Query: 701 LQVSVEPYSL--------LTKEEIIRRIKSIYQSAASVICC-STKEFLCSKPRSNFMEDV 751
           LQ +V+ Y L         TKEE+  +IK++  SAASV+C  S +E    K +++F+ED+
Sbjct: 677 LQDNVQHYQLGNADLLFATTKEEMTTKIKNMENSAASVLCSLSARE----KQQNHFLEDI 732

Query: 752 VGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHAT 811
           +G VAL+G+V + +LSR LAEYLGE QML ++CRS + A +LEKY+Q+G ID   AL+A 
Sbjct: 733 IGVVALLGSVQSPELSRMLAEYLGEDQMLGVICRSLDTAISLEKYKQNGEIDYVHALNAA 792

Query: 812 -AAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNM 870
            AA+LGK+I  R+ V+  E IRPY G    ND QRKLALP P L     P GF+GYAVNM
Sbjct: 793 EAASLGKAISRRFHVMGFEDIRPYRGNL-QNDSQRKLALPDPKL-SNRTPEGFMGYAVNM 850

Query: 871 VNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKE 930
           + L+ HH+  RT++G+GLRET+L+ LF KL VYKT + M+ A  CI +GAVSLDGGI++E
Sbjct: 851 IELNTHHLQARTASGHGLRETVLFSLFKKLHVYKTSESMMAAIECIENGAVSLDGGIIRE 910

Query: 931 DGIISLGCGNPTICFPI-VRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDL 988
           +G +SLG GNP I FP   +  I  ++ + L QIE+KK     ++  I++  K + K L
Sbjct: 911 NGTLSLGFGNPYIYFPCGNKMDIPPEATQMLNQIEKKK----ALLLKIEKGRKTVSKHL 965

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141225|ref|XP_003572140.1| PREDICTED: uncharacterized protein LOC100829204 [Brachypodium distachyon]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 322/1025 (31%), Positives = 494/1025 (48%), Gaps = 123/1025 (12%)

Query: 1    MHDHYDAEKDCGVDQPILLVGHKNIKPLVISTDVA--RVHKVVKKKGAMWKSGQKVKLLK 58
            MHD YD E D G D+  +++   N + L IS DV   RV+  V +KG  W+ G  +K+  
Sbjct: 329  MHDKYDVEMDGGDDEHTVIINPTNKERLGISKDVKVIRVYNSVSRKGKTWRRGDHLKIQP 388

Query: 59   GAYAGIHNN------DVYATIEYFVIEGLQGDAGGEARIICRPLAVPDEKGCVLAVNNGN 112
            G  A +  N      + YAT+E+ V+EGL GD           + +    GC+L      
Sbjct: 389  GVMARMKTNFYALKNNFYATLEFVVVEGLAGD-----------VKLDLYAGCLLEEGQDG 437

Query: 113  ASLHIGSSLSLPIGVIDSEKCVPVNKNVWDQQLEKYRQKSPSTIELLKETQCQELEIDGV 172
             +L I   +S P+ +ID +KC  ++ N W Q L+K ++K+P+ IE+LK  +   L I G 
Sbjct: 438  MNLDIQECVSFPVSMIDDDKCQIMDDNSWSQFLKKKKEKAPACIEVLKNLEGDALAIGGD 497

Query: 173  LPSSAI--AGQNPPREIVAVVRPASFISSSASKNLVQKYIVKNSS-EMLMEVKFKCEDEN 229
            LP   +  AG   P EIVAV+RP  + +++ S  L  +YIVK+   EM+ME+      E+
Sbjct: 498  LPFEEVVMAGYQHPCEIVAVIRPQIY-TANCSSTLDNRYIVKDDELEMIMEINHLPGSED 556

Query: 230  LEDVVPLYTARVAPSSRKGYQGLYIFEVGCKFPKLFQNAGAYTFSFHLTETSCKSCEKKV 289
              D   +      PSS     GL    V C   +        +  F+  E       K V
Sbjct: 557  HLDAKLVDRVFKKPSSHNIINGLLGMPVRCLVVR--------STDFYGNEIPFLDVPKVV 608

Query: 290  LVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIKPS 349
            +           +LD     ++  +V      LS     +  N + F  K   L  I+P 
Sbjct: 609  IT----------ILDGD---DILAQVDDMKMELSSDSLTL--NVMDFLFKTSKLDMIRP- 652

Query: 350  KIIKVEDKLKWNLSPDKLTLNIQDILVASSKL-----------DEIRPDYRATLVISSKD 398
               K E  L+ +LS ++    I D+    + L           D ++P + +T+ +    
Sbjct: 653  ---KCEAMLRISLSDNE----ISDVFPCKAGLSSYYHQEFKYFDAVKPGFASTVKMD--- 702

Query: 399  KPVSVSIPCRVTPGSLKNVAVHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGLEVELNV 458
              +S+     +TP                  GSVI  + LE+FD   N+V++G E+ + +
Sbjct: 703  --MSLYFENNLTP------------------GSVIDDVLLEVFDHCDNHVEEGTELVVTM 742

Query: 459  DGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFKQDFQTEKREL 518
             G    D+ G  RKV+  G +DLSGLLKV  G+G    L +      IF + F+   REL
Sbjct: 743  VGLSFIDKHGPVRKVNSEGFVDLSGLLKVVNGFGSQACLMISRHEKKIFAKTFKIATREL 802

Query: 519  RVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKSDVINTENSIR 578
              +  VP+ C  G+ L++I F++  S G +D  I      G  HTL+I+ +        R
Sbjct: 803  TAVK-VPQSCQAGTYLQNIIFKVFYSDGLIDEAI-----DGPLHTLSIRLNEAELVEGAR 856

Query: 579  YAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKV-PIVRAPKLESDDIRTPCSD 637
            YAF  GRC V  +++P+  G     A       +N+  +  PI   P        T    
Sbjct: 857  YAFEHGRCVVSRLAVPREPGTLHVYAC--DLVRVNLEDEAGPIFSHP--------TSSVS 906

Query: 638  GKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEEV 697
             +  LL          N    +  ++  +  E+      I   EK +  L+ QK  +E  
Sbjct: 907  SQNLLLPSQLVSYQSNNLAAYVEDVMGNISDEIEKLDSKICSEEKLINFLDCQKKSLENE 966

Query: 698  LSKLQVSVEPY--SLLTKEEIIR-RIKSIYQSAASVIC--CSTKEFLCSKPRSNFMEDVV 752
            +   +  + P   S    +E+ R +I+    +AASV+C   S K +   +P   F EDV+
Sbjct: 967  IFNRKDEIGPIVESCSGAKELTRHKIQESSGTAASVLCHLSSGKGY---EPGKCFREDVI 1023

Query: 753  GPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATA 812
            G VAL+GTV   K+SR L+ YLGE  MLA+VC + +AA  +EKY+ DG +D    +H  A
Sbjct: 1024 GIVALLGTVAHKKMSRMLSVYLGEDNMLAVVCMTRDAANYIEKYDTDGNVDVHFGIHREA 1083

Query: 813  AALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVN 872
            A LG  I+ R+   CL+ IRPY G    N  Q+ LALP    P    P GF G+AVNM++
Sbjct: 1084 ANLGIPINRRFHTFCLDAIRPYEGDLFQN-KQKNLALP---FPHYETPKGFCGFAVNMID 1139

Query: 873  LDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDG 932
            +   +++  TS+G+GLRETL Y LFG+LQVY+TR DM++A   +++GA+SLDGG++K DG
Sbjct: 1140 ISADNLNKITSSGHGLRETLFYSLFGELQVYETRNDMLQAIPYLKNGAISLDGGVIKGDG 1199

Query: 933  IISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLK 992
               LG  +P + FP V         +AL+ +++  L++  IM   +   KA+E  + +++
Sbjct: 1200 TWLLGDSDPEVTFPFV-----PNGPDALEDLQDLPLKIK-IMLGKKAHLKAVEAKIRRVE 1253

Query: 993  NSEDK 997
             S  K
Sbjct: 1254 ESRQK 1258

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177087|dbj|BAB10393.1| unnamed protein product [Arabidopsis thaliana]

 Score =  362 bits (928), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 346/633 (54%), Gaps = 64/633 (10%)

Query: 394  ISSKDKPVSVSIPCRVTPGSLKNVA-VHPQNLGILLPGSVIKMLKLEMFDAFYNNVKKGL 452
            IS  D+P SVS+ C+V PG LK+V   +P+ L  LLPGS ++   LE+FD + N+V +G 
Sbjct: 727  ISCVDEPFSVSVSCKVNPGPLKHVVEKYPEALENLLPGSTVQNYILEVFDGYNNHVAEGT 786

Query: 453  EVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKN----------VSLSVLSD 502
             V + ++G+CI D +GL +KV+  GCIDLSG+L+V AGYGK           +SLSV+S 
Sbjct: 787  NVLICIEGYCINDSMGLNQKVNSCGCIDLSGILQVTAGYGKTSNICYHSFVRLSLSVMSG 846

Query: 503  NGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSH 562
               IFK++ QTE+REL +++ +PECC  GS L ++ F++ DS G +D +IH D+KSG  H
Sbjct: 847  IDEIFKKESQTERRELMLLTKLPECCVAGSNLTNLIFKVTDSDGVMDTSIHHDEKSGCFH 906

Query: 563  TLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVR 622
            T++I++D  + E+ IRYAF  G C VP +SLP+ EG F F   HS++ EL++S+K+ +  
Sbjct: 907  TMSIETDSSSDESEIRYAFVHGSCKVPTLSLPEREGVFSFKVFHSRFPELHLSLKIQLTP 966

Query: 623  APKLESDDIR------TPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESEVRNYGLC 676
            A  L+ D+        TP S         P+     G  +  + +     +  +  Y   
Sbjct: 967  AQILQRDETSYSRMGLTPKSK-MASTTYSPALSSQTGPSLRDVAQFTESFKENLIGYSEH 1025

Query: 677  IGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYS------LLTKEEIIRRIKSIYQ-SAAS 729
                ++ L  L  ++ + +E L  LQ S+EP        L TKE ++++I+  +  +AAS
Sbjct: 1026 RVEIDERLHCLEAEQNQAKEELRTLQASLEPLGAMFPECLSTKESMMKQIEEKHHDTAAS 1085

Query: 730  VICCSTKEFLCSKPRSNFM--EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSF 787
            V CC  ++     P+S F+  + V G VAL+G+V +  LSR L+EYLGE  +LALVC+S 
Sbjct: 1086 VFCCLYRK--SPPPQSLFLSKKGVFGLVALLGSVASTSLSRVLSEYLGEDMLLALVCKSA 1143

Query: 788  EAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKL 847
            +                       A  L    + R+ V+CL+ IRP+      NDPQ+KL
Sbjct: 1144 QIG------------------PNNAEFLRLQSNHRFHVLCLDAIRPWKDGLLENDPQKKL 1185

Query: 848  ALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK 907
            A+  P LP G+   GF GYAVNM++L    + ++T +G GLRETL Y LFG LQ+ KTR 
Sbjct: 1186 AMDDPKLPDGDPIPGFKGYAVNMIDLAPEELTVQTYSGYGLRETLFYNLFGNLQL-KTR- 1243

Query: 908  DMIEAHTCIRHGAVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKK 967
                         + L      +D I       P   FPI    +       L+++E  +
Sbjct: 1244 ------------VLFLASVFTADDMIYGFWISIPEFHFPIT---LKEDEEVKLRKMEAAR 1288

Query: 968  LELDGIMQLIQESNKALEKDLEKLKNSEDKFNS 1000
             ++    + I+E   ++ K  +K+K + +K+++
Sbjct: 1289 DKVRMAAKKIEEEKCSMRKVDKKMKKTNEKYHN 1321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436479|ref|XP_003588515.1| hypothetical protein MTR_1g008050 [Medicago truncatula] gi|355477563|gb|AES58766.1| hypothetical protein MTR_1g008050 [Medicago truncatula]

 Score =  340 bits (873), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 210/517 (40%), Positives = 310/517 (59%), Gaps = 39/517 (7%)

Query: 277  LTETSCKSCEKKVLVKGSSEVGKWKLLDTKERPELRVRVGSFLPPLSVACYDIYDNRIPF 336
            + ++  KS EK+V  K S    K++LL   + PEL VRVGS  P L++ACYDI+ NR PF
Sbjct: 743  VVDSISKSFEKRVTGKPSHCAKKYELLTDDQSPELDVRVGSTFPTLAIACYDIHGNRAPF 802

Query: 337  ESKPQFLVKIKPSKIIKVE-DKLKWNLSPDKLTLNIQDILVA--SSKLDEIRPDYRATLV 393
            ++ P   V+++ +K +  +    K  LS DK+ L I D +V   S+ LD+IRP Y   L+
Sbjct: 803  QTIPDVTVQLQAAKDLYFKVHGTKIGLSTDKMILKIMDAMVTLTSNDLDKIRPSYMTNLI 862

Query: 394  ISSKDKPVSVSIPCRVTPGSLKNVAVHPQ-NLGILLPGSVIKMLKLE------------- 439
            I+S++ P+S+S PCRV+P   ++V + P      L+PG ++K L LE             
Sbjct: 863  IASENIPLSLSFPCRVSPAYPEHVELKPNIREDQLIPGFIVKELVLEVYHLEVQISSNPS 922

Query: 440  ----------MFDAFYNNVKKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKA 489
                      MFDA+ N+V +G+EV + VDGF + +     +  D  G IDLSGLLK+ A
Sbjct: 923  ATLYQAAVLEMFDAYRNHVSEGMEVNIVVDGFEMLNHCSAYKVADK-GKIDLSGLLKLTA 981

Query: 490  GYGKNVSLSVLSDNGVIFKQDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVD 549
            GYG+N S+SV  +   IFKQDF   +R LR+ S VP+ C  G QLE++ FEIV+  G VD
Sbjct: 982  GYGENASISVTFEGRPIFKQDFSIARRILRIASKVPDFCAAGGQLENVKFEIVNIDGDVD 1041

Query: 550  VTIHDDDKSGQSHTLTIKSDVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQY 609
              IH D++  Q H LTIKSD+IN E SIRY F+QG CTVP I +P+ EG FCF A HSQY
Sbjct: 1042 TKIHHDNQDYQFHMLTIKSDLINAEESIRYLFKQGCCTVPFIRVPEIEGTFCFEAFHSQY 1101

Query: 610  TELNISIKVPIVRAPKLESDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPIMKIVNELESE 669
            T+L +++KV +++    + D  +    D  +F L+  SP  H  N M+ ++      E +
Sbjct: 1102 TKLCLAVKVRVIKMSNAK-DVAQLLSPDKNIFPLQELSPFNHENNLMISVLNS----EGK 1156

Query: 670  VRNYGLCIGRHEKALKLLNDQKMEVEEVLSKLQVSVEPYSLLTKEEIIRRIKSIYQSAAS 729
            +   G  I + E+ LK  +++K E E+ + KL+ +V   ++ TKEE+I +IKS+  SA S
Sbjct: 1157 ICQLGSKIKKVEEYLKTCHEEKAEKEKEMLKLRDNV---NVNTKEEVITKIKSMENSATS 1213

Query: 730  VICCSTKEFLCSKPRSNFMEDVVGPVALIGTVCTNKL 766
            V+C  +      K +++F+ED++G VAL+G+V + KL
Sbjct: 1214 VLCSLSAH---EKQQNHFLEDIIGVVALLGSVKSPKL 1247

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1010
TAIR|locus:2082876	420	DMS3 "AT3G49250" [Arabidopsis	0.326	0.785	0.394	3.5e-50

TAIR|locus:2082876 DMS3 "AT3G49250" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 3.5e-50, P = 3.5e-50
 Identities = 138/350 (39%), Positives = 191/350 (54%)

Query:   666 LESEVRNYGLCIGRHEKALKLLNDQKMEVEEVL-------SKLQVSVEPYS-----LLTK 713
             LES++   G  I +HE  LK L  QK +++E +       SKL  S  P S      L  
Sbjct:    56 LESDLEAMGNKIKQHEDNLKFLKSQKNKMDEAIVDLQVHMSKLNSSPTPRSENSDNSLQG 115

Query:   714 EEIIRRIKSIYQSAASVICCSTKEFLCSKPRSNFM--EDVVGPVALIGTVCTNKLSRTLA 771
             E+I  +I     SAA V+  S  E L     S  M  + VVG VA +G V    LS+ L+
Sbjct:   116 EDINAQILRHENSAAGVL--SLVETLHGAQASQLMLTKGVVGVVAKLGKVNDENLSQILS 173

Query:   772 EYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGI 831
              YLG   MLA+VCR++E+  ALE Y+  G ID    LH   +++G+ I   +  ICLE +
Sbjct:   174 NYLGTRSMLAVVCRNYESVTALEAYDNHGNIDINAGLHCLGSSIGREIGDSFDAICLENL 233

Query:   832 RPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRET 891
             RPY G+  ++D QR+L L  P LP G  P GF+G+AVNM+ +D  ++   TS G GLRET
Sbjct:   234 RPYVGQHIADDLQRRLDLLKPKLPNGECPPGFLGFAVNMIQIDPAYLLCVTSYGYGLRET 293

Query:   892 LLYRLFGKLQVYKTRKDMIEAHTCIRHGAVSLDGGILKEDGIISLGCG---NPTICFPIV 948
             L Y LF +LQVYKTR DMI A  CI  GAVSLDGGI+++ GI +LG     N     P  
Sbjct:   294 LFYNLFSRLQVYKTRADMISALPCISDGAVSLDGGIIRKTGIFNLGNRDEVNVRFAKPTA 353

Query:   949 RTRISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKF 998
                +   S EA K+++E K + +  ++ I+      E  +      +++F
Sbjct:   354 SRTMDNYS-EAEKKMKELKWKKEKTLEDIKREQVLREHAVFNFGKKKEEF 402


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1010      1010   0.00079  123 3  11 22  0.41    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  457 KB (2216 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  94.36u 0.11s 94.47t   Elapsed:  00:00:05
  Total cpu time:  94.36u 0.11s 94.47t   Elapsed:  00:00:05
  Start:  Tue May 21 00:28:09 2013   End:  Tue May 21 00:28:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006306 "DNA methylation" evidence=RCA;IMP

GO:0031047 "gene silencing by RNA" evidence=RCA;IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009555 "pollen development" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0016568 "chromatin modification" evidence=RCA

GO:0016569 "covalent chromatin modification" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1010
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.91
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.89
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.81
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.77
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.75
KOG0018	1141	consensus Structural maintenance of chromosome pro	99.67
PF06470	120	SMC_hinge: SMC proteins Flexible Hinge Domain; Int	99.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.23
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.5
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.33
KOG0979	1072	consensus Structural maintenance of chromosome pro	86.16
PRK04863	1486	mukB cell division protein MukB; Provisional	83.03

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.91  E-value=4.7e-24  Score=261.78  Aligned_cols=140  Identities=26%  Similarity=0.392  Sum_probs=124.6

Q ss_pred             CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812          748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC  827 (1010)
Q Consensus       748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP  827 (1010)
                      .+||+|+|++|++|++ .+..||+.+||.+ +-+|||+|+.+|+.++.|+                  |+++.||+||||
T Consensus       514 ~~Gv~G~v~~li~v~~-~y~~Aie~alG~~-l~~vVV~~~~~a~~~i~~l------------------k~~~~gr~tflp  573 (1163)
T COG1196         514 LPGVYGPVAELIKVKE-KYETALEAALGNR-LQAVVVENEEVAKKAIEFL------------------KENKAGRATFLP  573 (1163)
T ss_pred             CCCccchHHHhcCcCh-HHHHHHHHHcccc-cCCeeeCChHHHHHHHHHH------------------hhcCCCccccCc
Confidence            8999999999999988 6666799999975 7799999999999999999                  899999999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812          828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK  907 (1010)
Q Consensus       828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e  907 (1010)
                      |+.|+|....              +.  .  ..+||+|+|+|+|+||++|.            .+|+++||+|+|++   
T Consensus       574 l~~i~~~~~~--------------~~--~--~~~g~~~~a~dli~~d~~~~------------~~~~~~l~~t~Iv~---  620 (1163)
T COG1196         574 LDRIKPLRSL--------------KS--D--AAPGFLGLASDLIDFDPKYE------------PAVRFVLGDTLVVD---  620 (1163)
T ss_pred             hhhhcccccc--------------cc--c--cccchhHHHHHHhcCCHHHH------------HHHHHHhCCeEEec---
Confidence            9999986541              11  1  17999999999999999999            89999999999988   


Q ss_pred             cHHHHHHhhc-C----ceEEccCceeecCceEEeccCC
Q 001812          908 DMIEAHTCIR-H----GAVSLDGGILKEDGIISLGCGN  940 (1010)
Q Consensus       908 dM~~A~~~i~-~----giVTLDGeIIe~sGamTGGs~~  940 (1010)
                      +|+.|+.++. .    ++|||||++++++|+||||++.
T Consensus       621 ~l~~A~~l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~  658 (1163)
T COG1196         621 DLEQARRLARKLRIKYRIVTLDGDLVEPSGSITGGSRN  658 (1163)
T ss_pred             CHHHHHHHHHhcCCCceEEecCCcEEeCCeeeecCCcc
Confidence            8888998877 2    2999999999999999999665

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.89  E-value=5.9e-22  Score=237.59  Aligned_cols=140  Identities=21%  Similarity=0.329  Sum_probs=119.5

Q ss_pred             CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812          748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC  827 (1010)
Q Consensus       748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP  827 (1010)
                      .+|++|+|++|+.|+ +.+..|++.+||.. +.+|||+|.++|+.++.|+                  ++++.||+||+|
T Consensus       520 ~~g~~g~l~dli~v~-~~y~~Aie~~lg~~-l~~ivv~~~~~a~~~i~~l------------------~~~~~gr~tflp  579 (1164)
T TIGR02169       520 IQGVHGTVAQLGSVG-ERYATAIEVAAGNR-LNNVVVEDDAVAKEAIELL------------------KRRKAGRATFLP  579 (1164)
T ss_pred             CCCceecHHHhcCcC-HHHHHHHHHHhhhh-hCCEEECCHHHHHHHHHHH------------------HhcCCCCeeecc
Confidence            579999999999997 45555699999964 7799999999999999999                  888999999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812          828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK  907 (1010)
Q Consensus       828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e  907 (1010)
                      |+.|++....             . .+   ..++|++|+|.++|+|++.|.            .++.++||+|+|++   
T Consensus       580 l~~~~~~~~~-------------~-~~---~~~~~~~~~~~~~i~~~~~~~------------~~~~~~lg~~~v~~---  627 (1164)
T TIGR02169       580 LNKMRDERRD-------------L-SI---LSEDGVIGFAVDLVEFDPKYE------------PAFKYVFGDTLVVE---  627 (1164)
T ss_pred             HhhcCCCCCC-------------c-cc---ccCCCchHHHHHHccCcHHHH------------HHHHHHCCCeEEEc---
Confidence            9999863220             0 11   225799999999999999998            79999999999988   


Q ss_pred             cHHHHHHhhc-CceEEccCceeecCceEEeccC
Q 001812          908 DMIEAHTCIR-HGAVSLDGGILKEDGIISLGCG  939 (1010)
Q Consensus       908 dM~~A~~~i~-~giVTLDGeIIe~sGamTGGs~  939 (1010)
                      +++.|..+++ .++|||||++++++|+||||+.
T Consensus       628 ~l~~a~~~~~~~~~vTldG~~~~~~G~~tgG~~  660 (1164)
T TIGR02169       628 DIEAARRLMGKYRMVTLEGELFEKSGAMTGGSR  660 (1164)
T ss_pred             CHHHHHHHhcCCcEEEeCceeEcCCcCccCCCC
Confidence            7888998885 3399999999999999999973

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=1.2e-18  Score=208.36  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=128.0

Q ss_pred             CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812          747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI  826 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL  826 (1010)
                      .++|++|-.++||.+|..|- .|+++|-+  .+-+|||+|.+.|+..+.|+                  ++++.||+||+
T Consensus       614 ~i~Gf~GRLGDLg~Id~kYD-vAIsTac~--~LdyiVVdt~e~aq~cI~fl------------------~~~nLgraTFi  672 (1293)
T KOG0996|consen  614 RIPGFYGRLGDLGAIDEKYD-VAISTACA--RLDYIVVDTIETAQECINFL------------------KKNNLGRATFI  672 (1293)
T ss_pred             CCCccccccccccccchHHH-HHHHHhcc--ccceEEeccHHHHHHHHHHH------------------HHcCCCceeEE
Confidence            47899999999999965555 45777433  25599999999999999999                  89999999999


Q ss_pred             ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEecccccc-ccccccccccCCCchHhHHHHhhcceEEEec
Q 001812          827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLD-DHHMHIRTSAGNGLRETLLYRLFGKLQVYKT  905 (1010)
Q Consensus       827 PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D-~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT  905 (1010)
                      +||.|+-....+.  ++|.+  .+-|             .-.+||+|+ +++.            +.||+++++|+|++ 
T Consensus       673 ~LDki~~~~~~l~--~i~tp--envP-------------RLfDLv~~~d~~~r------------~aFYfaLrdtLV~d-  722 (1293)
T KOG0996|consen  673 ILDKIKDHQKKLA--PITTP--ENVP-------------RLFDLVKCKDEKFR------------PAFYFALRDTLVAD-  722 (1293)
T ss_pred             ehHhhhhhhhccC--CCCCC--CCcc-------------hHhhhhccCCHHHH------------HHHHHHHhhhhhhc-
Confidence            9999995433211  11111  1112             245899997 9998            89999999999988 


Q ss_pred             hhcHHHHHHhhcC-----ceEEccCceeecCceEEeccCCC-ceeeccc--c-ccCchHHHHHHHHHHHHHHHHHHHHHH
Q 001812          906 RKDMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGNP-TICFPIV--R-TRISTQSIEALKQIEEKKLELDGIMQL  976 (1010)
Q Consensus       906 ~edM~~A~~~i~~-----giVTLDGeIIe~sGamTGGs~~~-~v~F~~~--~-~~~~~~~~~l~~ql~~l~~e~~~l~e~  976 (1010)
                        ++++|-+++..     ++|||||.+|+.+|+||||...+ +-+-+..  . .-.+.....+++++..+..+.+.+.+.
T Consensus       723 --~LeQAtRiaygk~rr~RVvTL~G~lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~  800 (1293)
T KOG0996|consen  723 --NLEQATRIAYGKDRRWRVVTLDGSLIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQ  800 (1293)
T ss_pred             --CHHHHHHHhhcCCCceEEEEecceeecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              89999988762     29999999999999999996542 1111111  1 111334556666666655555555544


Q ss_pred             H
Q 001812          977 I  977 (1010)
Q Consensus       977 i  977 (1010)
                      .
T Consensus       801 ~  801 (1293)
T KOG0996|consen  801 L  801 (1293)
T ss_pred             H
Confidence            3

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.77  E-value=6.6e-18  Score=198.99  Aligned_cols=138  Identities=20%  Similarity=0.294  Sum_probs=112.9

Q ss_pred             CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812          748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC  827 (1010)
Q Consensus       748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP  827 (1010)
                      ..|++|+|.+|++||+.+..| .++-+|.. +.+|||+|++.|..+..-+                  ++-+.||.||+|
T Consensus       521 ~ngv~G~v~eL~~v~~~f~ta-vEvtaGNs-LF~iVVdndevATkIl~~~------------------n~m~~GrVTF~P  580 (1200)
T KOG0964|consen  521 PNGVFGTVYELIKVPNKFKTA-VEVTAGNS-LFNIVVDNDEVATKILRKL------------------NKMKGGRVTFMP  580 (1200)
T ss_pred             ccccceehhhhhcCCHHHHhH-Hhhhcccc-eEEEEecccHHHHHHHHHH------------------HhccCCeeEEee
Confidence            489999999999997777765 67777753 6699999998888877666                  677889999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812          828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK  907 (1010)
Q Consensus       828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e  907 (1010)
                      ||.|+++...++ .|   .-++|                -..-++|+|+|.            .+|.++||+|+|+.   
T Consensus       581 LNrl~~r~v~yp-~~---sdaiP----------------li~kl~y~p~fd------------ka~k~Vfgktivcr---  625 (1200)
T KOG0964|consen  581 LNRLKARDVEYP-KD---SDAIP----------------LISKLRYEPQFD------------KALKHVFGKTIVCR---  625 (1200)
T ss_pred             cccCchhhccCC-CC---CCccc----------------hHHHhCcchhhH------------HHHHHHhCceEEec---
Confidence            999999655332 11   11111                234588999999            79999999999998   


Q ss_pred             cHHHHHHhhc-Cc--eEEccCceeecCceEEeccCC
Q 001812          908 DMIEAHTCIR-HG--AVSLDGGILKEDGIISLGCGN  940 (1010)
Q Consensus       908 dM~~A~~~i~-~g--iVTLDGeIIe~sGamTGGs~~  940 (1010)
                      +|..|.++++ +.  .|||||+.+..-|+||||+..
T Consensus       626 dl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D  661 (1200)
T KOG0964|consen  626 DLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYED  661 (1200)
T ss_pred             cHHHHHHHHHhcCCCeEEeccceecccCCccccchh
Confidence            8999999999 44  899999999999999999975

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=9.6e-18  Score=198.29  Aligned_cols=276  Identities=18%  Similarity=0.238  Sum_probs=178.0

Q ss_pred             cchhHHhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHH--------------HHHHHhhcccccccC-CHHHHHHH
Q 001812          655 HMVPIMKIVNELESEVRNYGLCIGRHEKALKLLNDQKMEVEE--------------VLSKLQVSVEPYSLL-TKEEIIRR  719 (1010)
Q Consensus       655 ~~~~~~~~~~~lq~~l~~lG~kI~~~e~~Lk~Lksqk~~~~~--------------~i~dLq~~l~~~~~s-t~Eev~k~  719 (1010)
                      +|.+.=..-..++-.++..-.++.+++++|+..+.++..+.+              .++.|...|..+... +.++..++
T Consensus       400 ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l~q  479 (1174)
T KOG0933|consen  400 QLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEALKQ  479 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            344444455567778888888999999999998888544333              444444444444321 23333333


Q ss_pred             --------HHhhcccccceeeeccc-ccCCCCCCCC-CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHH
Q 001812          720 --------IKSIYQSAASVICCSTK-EFLCSKPRSN-FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEA  789 (1010)
Q Consensus       720 --------I~~~ensAA~i~c~l~~-r~~~~~~~S~-~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~  789 (1010)
                              +-++.+.--..+-++.+ +..-..|..+ ....|.|+||.|++|+|..++.||...+|.+ +-+|||+|++.
T Consensus       480 ~~~~l~~~~~~lk~~~~~l~a~~~~~~f~Y~dP~~nfdrs~V~G~Va~Li~vkd~~~~tAle~~aGgr-LynvVv~te~t  558 (1174)
T KOG0933|consen  480 RRAKLHEDIGRLKDELDRLLARLANYEFTYQDPEPNFDRSKVKGLVAKLIKVKDRSYATALETTAGGR-LYNVVVDTEDT  558 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCccchHHHHHHHHHHHheeCcchHHHHHHHHhcCc-ceeEEeechHH
Confidence                    11111110000000111 0001123333 4578999999999999999999999999985 77999999999


Q ss_pred             HHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEecCCCCCCCCCCCCCCccccccCCCCCCCCC-CCCCCceEEEe
Q 001812          790 AFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICLEGIRPYSGKFGSNDPQRKLALPAPTLPKG-NIPAGFVGYAV  868 (1010)
Q Consensus       790 ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLPLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g-~~~~GFIGyAV  868 (1010)
                      ++.|..                    +-+.-.|.|.||||+|+.+...     |+.        ++.. ...++=+-.|+
T Consensus       559 gkqLLq--------------------~g~l~rRvTiIPLnKI~s~~~s-----~~v--------~~~ak~v~~~~v~~al  605 (1174)
T KOG0933|consen  559 GKQLLQ--------------------RGNLRRRVTIIPLNKIQSFVLS-----PNV--------LQAAKNVGNDNVELAL  605 (1174)
T ss_pred             HHHHhh--------------------cccccceeEEEechhhhhccCC-----HhH--------HHHHHHhcCchHHHHH
Confidence            987633                    1233468999999999987652     111        1110 02456677899


Q ss_pred             ccccccccccccccccCCCchHhHHHHhhcceEEEechhcHHHHHHhhcCc-----eEEccCceeecCceEEeccCCCce
Q 001812          869 NMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRKDMIEAHTCIRHG-----AVSLDGGILKEDGIISLGCGNPTI  943 (1010)
Q Consensus       869 NLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~edM~~A~~~i~~g-----iVTLDGeIIe~sGamTGGs~~~~v  943 (1010)
                      +||.||+.+.            ++..|+||.|+|++   +++.|+.++=+.     .|||||+++.|+|.+|||+++++-
T Consensus       606 ~Li~yd~~l~------------~amefvFG~tlVc~---~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a  670 (1174)
T KOG0933|consen  606 SLIGYDDELK------------KAMEFVFGSTLVCD---SLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGA  670 (1174)
T ss_pred             HHhcCCHHHH------------HHHHHHhCceEEec---CHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcc
Confidence            9999999999            89999999999999   778899776543     699999999999999999997431


Q ss_pred             eeccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812          944 CFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNKA  983 (1010)
Q Consensus       944 ~F~~~~~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~  983 (1010)
                      .    ....-..+.+++.+++....+++.++.+++..+..
T Consensus       671 ~----~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~  706 (1174)
T KOG0933|consen  671 D----LLRQLQKLKQAQKELRAIQKELEALERELKSLEAQ  706 (1174)
T ss_pred             c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    01011234445555555555555555555544433

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.6e-15  Score=181.00  Aligned_cols=143  Identities=20%  Similarity=0.229  Sum_probs=124.2

Q ss_pred             CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812          747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI  826 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL  826 (1010)
                      +.+|++|.|.+|+.-.-.++..|+++.||. .|-+|||+|...|+..|.|+                  |.++.|-.|||
T Consensus       500 ~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk-~~daIiVdte~ta~~CI~yl------------------Keqr~~~~TFl  560 (1141)
T KOG0018|consen  500 LFPGVYGRVIDLCQPTQKKYEIAVTVVLGK-NMDAIIVDTEATARDCIQYL------------------KEQRLEPMTFL  560 (1141)
T ss_pred             hCCCccchhhhcccccHHHHHHHHHHHHhc-ccceEEeccHHHHHHHHHHH------------------HHhccCCcccc
Confidence            679999999999999879999999999997 59999999999999999999                  89999999999


Q ss_pred             ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEech
Q 001812          827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR  906 (1010)
Q Consensus       827 PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~  906 (1010)
                      ||++|+-...+              ..|+   .+.| +-.|+|.|+|+++|+            .+..|++|+++|++|+
T Consensus       561 Pld~i~v~~~~--------------e~lr---~~~g-~rlv~Dvi~ye~e~e------------ka~~~a~gn~Lvcds~  610 (1141)
T KOG0018|consen  561 PLDSIRVKPVN--------------EKLR---ELGG-VRLVIDVINYEPEYE------------KAVQFACGNALVCDSV  610 (1141)
T ss_pred             chhhhhcCccc--------------cccc---CcCC-eEEEEEecCCCHHHH------------HHHHHHhccceecCCH
Confidence            99999864331              1332   3566 889999999999999            7999999999999955


Q ss_pred             hcHHHHHHhhcC-----ceEEccCceeecCceEEeccCCC
Q 001812          907 KDMIEAHTCIRH-----GAVSLDGGILKEDGIISLGCGNP  941 (1010)
Q Consensus       907 edM~~A~~~i~~-----giVTLDGeIIe~sGamTGGs~~~  941 (1010)
                      ++   |+.++=.     .+|||||-++..+|.||||+...
T Consensus       611 e~---Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~  647 (1141)
T KOG0018|consen  611 ED---ARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGA  647 (1141)
T ss_pred             HH---HHHhhhcccccceEEEeeeeEEeccceecCCccCC
Confidence            55   8866531     18999999999999999999873

>PF06470 SMC_hinge: SMC proteins Flexible Hinge Domain; InterPro: IPR010935 This entry represents the hinge region of the SMC (Structural Maintenance of Chromosomes) family of proteins

Probab=99.58  E-value=1.2e-14  Score=133.48  Aligned_cols=118  Identities=25%  Similarity=0.302  Sum_probs=99.1

Q ss_pred             CceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEec
Q 001812          749 EDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVICL  828 (1010)
Q Consensus       749 ~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLPL  828 (1010)
                      +||+|.|++|++| ++.+..+++.+||. .+.+|||+|.+.|+.+++++                  ++++.||+||+||
T Consensus         2 ~gv~G~l~dli~v-~~~~~~Ave~~LG~-~l~~iVV~~~~~a~~~i~~l------------------~~~~~gr~~~i~l   61 (120)
T PF06470_consen    2 PGVLGRLADLIEV-DPKYEKAVEAALGG-RLQAIVVEDEETAKKIIEFL------------------KENKLGRATFIPL   61 (120)
T ss_dssp             TTEEEEGGGSEEE-SGGGHHHHHHHHGG-GGGSEEESSHHHHHHHHHHH------------------HHTTSCEEEEEET
T ss_pred             CCeeeeHHhceec-CHHHHHHHHHHHHH-hhceEEECcHHHHHHHHHHH------------------hhccCCeEEEEEC
Confidence            6999999999999 56666779999996 48899999999999999999                  6778999999999


Q ss_pred             CCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccc-cccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812          829 EGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNL-DDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK  907 (1010)
Q Consensus       829 n~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~-D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e  907 (1010)
                      +.+++.....              ..+. ...+|..+.+.++|++ |+++.            .++.+|||+++|++   
T Consensus        62 ~~~~~~~~~~--------------~~~~-~~~~~~~~~l~d~i~~~d~~~~------------~~~~~llg~~~vv~---  111 (120)
T PF06470_consen   62 DKIRSRSSAS--------------SADQ-IRPPGGAGPLIDLIEFPDEEYR------------PALEFLLGDVVVVD---  111 (120)
T ss_dssp             TTTGGGTTSC--------------CCGG-HHSTTSEEEGGGGEEESCGGGH------------HHHHHHHTTEEEES---
T ss_pred             cccccccccc--------------chhh-ccCCcchHHHHHhcccCcHHHH------------HHHHHHcCCEEEEC---
Confidence            9998755421              0000 0157999999999999 88998            79999999999988   


Q ss_pred             cHHHHHHhh
Q 001812          908 DMIEAHTCI  916 (1010)
Q Consensus       908 dM~~A~~~i  916 (1010)
                      +++.|+.++
T Consensus       112 ~l~~A~~la  120 (120)
T PF06470_consen  112 DLEEARKLA  120 (120)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHhC
Confidence            788898874

The hinge region is responsible for formation of the DNA interacting dimer. It is also possible that the precise structure of it is an essential determinant of the specificity of the DNA-protein interaction [].; GO: 0005515 protein binding, 0005524 ATP binding, 0051276 chromosome organization, 0005694 chromosome; PDB: 2WD5_A 1GXL_C 1GXK_A 1GXJ_A 3NWC_B 3L51_A.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.23  E-value=5.1e-10  Score=134.88  Aligned_cols=185  Identities=21%  Similarity=0.254  Sum_probs=124.7

Q ss_pred             CCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEEe
Q 001812          748 MEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC  827 (1010)
Q Consensus       748 l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFLP  827 (1010)
                      ..|++|.+++|+.++ +.+..++...+|. .+-+|||++.+.|...+.++                  +....|+.+|+|
T Consensus       518 ~~~~~g~~~~li~~~-~~~~~a~~~~~g~-~~~~ivv~~~~~a~~~~~~l------------------~~~~~g~~~~l~  577 (1179)
T TIGR02168       518 LSGILGVLSELISVD-EGYEAAIEAALGG-RLQAVVVENLNAAKKAIAFL------------------KQNELGRVTFLP  577 (1179)
T ss_pred             cCCCccchhceeeeC-hhHHHHHHHHHHH-HhcCeEECCHHHHHHHHHHh------------------cccCCCcEEEee
Confidence            367999999999995 4555567777774 46679999998888777777                  677899999999


Q ss_pred             cCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhcceEEEechh
Q 001812          828 LEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTRK  907 (1010)
Q Consensus       828 Ln~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG~tlVfeT~e  907 (1010)
                      ++.++.....    .         +..+......|.+++|.++++|++.+.            .++.+.+|.+.++.   
T Consensus       578 l~~i~~~~~~----~---------~~~~~~~~~~~~~~~~~dl~~~~~~~~------------~~~~~~~~~~~ivt---  629 (1179)
T TIGR02168       578 LDSIKGTEIQ----G---------NDREILKNIEGFLGVAKDLVKFDPKLR------------KALSYLLGGVLVVD---  629 (1179)
T ss_pred             cccccccccc----c---------cchhhccccCchhHHHHHHhcccHhHH------------HHHHHHhCCceEeC---
Confidence            9999753210    0         000112235799999999999999887            67888899977766   


Q ss_pred             cHHHHHHhhc----Cc-eEEccCceeecCceEEeccCCCceeeccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001812          908 DMIEAHTCIR----HG-AVSLDGGILKEDGIISLGCGNPTICFPIVRTRISTQSIEALKQIEEKKLELDGIMQLIQESNK  982 (1010)
Q Consensus       908 dM~~A~~~i~----~g-iVTLDGeIIe~sGamTGGs~~~~v~F~~~~~~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~  982 (1010)
                      +++.|..++.    .| +||++|+++..||+++||+....    ........++..++.++++++.++..+.+++...+.
T Consensus       630 ~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~~~~~~----~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~  705 (1179)
T TIGR02168       630 DLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTN----SSILERRREIEELEEKIEELEEKIAELEKALAELRK  705 (1179)
T ss_pred             CHHHHHHHHHHcCCCceEEecCCEEEcCCceEecCccccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778887764    44 89999999888999887753100    000112234444444444444444444444444433


Q ss_pred             HH
Q 001812          983 AL  984 (1010)
Q Consensus       983 ~l  984 (1010)
                      .+
T Consensus       706 ~l  707 (1179)
T TIGR02168       706 EL  707 (1179)
T ss_pred             HH
Confidence            33

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.50  E-value=0.0011  Score=81.06  Aligned_cols=100  Identities=21%  Similarity=0.180  Sum_probs=65.3

Q ss_pred             HHHHhhcceEEEechhcHHHHHHh-----hcC-ceEE-------------ccCceeecCce-E-EeccCCCceeeccccc
Q 001812          892 LLYRLFGKLQVYKTRKDMIEAHTC-----IRH-GAVS-------------LDGGILKEDGI-I-SLGCGNPTICFPIVRT  950 (1010)
Q Consensus       892 LF~~LFG~tlVfeT~edM~~A~~~-----i~~-giVT-------------LDGeIIe~sGa-m-TGGs~~~~v~F~~~~~  950 (1010)
                      ++.+++|.+.+..++..+..|+..     .+. .+||             +||+++.++|. + +||+....    ..  
T Consensus       593 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~ivt~l~~a~~~~~~~~~~g~~v~~~G~~~~~gg~~~~~----~~--  666 (1179)
T TIGR02168       593 ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGG----SA--  666 (1179)
T ss_pred             hccccCchhHHHHHHhcccHhHHHHHHHHhCCceEeCCHHHHHHHHHHcCCCceEEecCCEEEcCCceEecC----cc--
Confidence            455677777776655553333322     223 3899             79999999994 4 47653222    11  


Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001812          951 RISTQSIEALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDK  997 (1010)
Q Consensus       951 ~~~~~~~~l~~ql~~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~  997 (1010)
                      ....++..+..+++.++.++..+...+.+.+..+..+...+..-..+
T Consensus       667 ~~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~  713 (1179)
T TIGR02168       667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE  713 (1179)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12356778888888888888888888888888888776665444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.33  E-value=0.011  Score=73.75  Aligned_cols=202  Identities=18%  Similarity=0.211  Sum_probs=111.1

Q ss_pred             CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhhhcCCccccchhhhhhhhcCcccCCeeEEE
Q 001812          747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI  826 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~k~GRaTFL  826 (1010)
                      +..-.+|+++..+++.++..+.+++++||. .+-+-||.|..++..|....               ++.+-... |.|.+
T Consensus       491 f~~~P~GPlG~~Vtl~~~KWa~aIE~~L~n-~lnaFiv~sh~D~~~Lr~i~---------------~~~~~~~~-~ptIv  553 (1074)
T KOG0250|consen  491 FQTPPKGPLGKYVTLKEPKWALAIERCLGN-LLNAFIVTSHKDARILRAIM---------------RRLKIPGN-RPTIV  553 (1074)
T ss_pred             CCCCCCCCccceeEecCcHHHHHHHHHHHH-hhhhheeCCHhhHHHHHHHH---------------HHcCCCCC-CCcEE
Confidence            456678999999999999999999999995 24489999998888777666               22222222 54433


Q ss_pred             --ecCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCceEEEeccccccccccccccccCCCchHhHHHHhhc--ceEE
Q 001812          827 --CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFG--KLQV  902 (1010)
Q Consensus       827 --PLn~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetLF~~LFG--~tlV  902 (1010)
                        |.+..- |...   ..|+-             ..|-    -+..+++|.-.-.           +++=-..|  ++++
T Consensus       554 vs~~~~~~-y~~~---~~p~~-------------~~pT----il~~le~ddp~V~-----------N~LID~s~iE~~lL  601 (1074)
T KOG0250|consen  554 VSSFTPFD-YSVG---RNPGY-------------EFPT----ILDALEFDDPEVL-----------NVLIDKSGIEQVLL  601 (1074)
T ss_pred             EecCCccc-cccc---cCCCC-------------CCCc----eeeeeecCChHHH-----------HHhhhhccceeEEE
Confidence              221111 1110   01110             0111    2233444332211           12222222  3445


Q ss_pred             EechhcHHHHHHhhcCc--------eEEccCceeecCce---EEeccCC--C---ceeecccc--ccCchHHHHHHHHHH
Q 001812          903 YKTRKDMIEAHTCIRHG--------AVSLDGGILKEDGI---ISLGCGN--P---TICFPIVR--TRISTQSIEALKQIE  964 (1010)
Q Consensus       903 feT~edM~~A~~~i~~g--------iVTLDGeIIe~sGa---mTGGs~~--~---~v~F~~~~--~~~~~~~~~l~~ql~  964 (1010)
                      .+   |=..|..+++.+        +.||||+.+-.+|.   ++.|...  .   .+.|....  ..+-.+++++++++.
T Consensus       602 iE---dk~Ea~~~m~s~~~p~n~~~aytldg~~~~~~g~~~~~ySt~~~~~r~~~~~~~s~d~~ie~le~e~~~l~~~~~  678 (1074)
T KOG0250|consen  602 IE---DKKEAREFMQSDKPPANVTKAYTLDGRQIFAGGPNYRVYSTRGTRARRPGVDEFSFDDEIEDLEREASRLQKEIL  678 (1074)
T ss_pred             ec---chHHHHHHHhcCCCCccceeeeccCccccccCCCCcceeccCCCCCCCccccchhHhHHHHHHHHHHHHHHHHHH
Confidence            44   555688887722        89999999999888   4444432  2   44554442  222234555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 001812          965 EKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNS 1000 (1010)
Q Consensus       965 ~l~~e~~~l~e~i~~~~~~l~~~~~~~~kk~~~~~~ 1000 (1010)
                      ++...++.+++.++..+..++++.+..+..+..-.+
T Consensus       679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~  714 (1074)
T KOG0250|consen  679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRK  714 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666666666655555555555444444333

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.16  E-value=9.7  Score=48.76  Aligned_cols=50  Identities=20%  Similarity=0.379  Sum_probs=42.4

Q ss_pred             CCCceeeeccceeeeccchhhhHHHHhhhhhhhceeEecchHHHHHHHHh
Q 001812          747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKY  796 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~y  796 (1010)
                      +-..|+|++.-=+.|++...+++|+..+|..+.-+.||.++++-..+-+-
T Consensus       446 FK~~vyeP~~m~l~~k~~~~A~~lEn~v~~~~~~~Fi~~~~eD~~lf~~~  495 (1072)
T KOG0979|consen  446 FKDEVYEPPIMTLNVKNAEFAKYLENFVGFNDLKAFICCDSEDYLLFVKK  495 (1072)
T ss_pred             hcccccCCceEEEecCChHHHHHHHcccCccccceeeeechHHHHHHHHH
Confidence            66899999888889999999999999999998889999998765554333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.03  E-value=2.6  Score=56.03  Aligned_cols=47  Identities=15%  Similarity=0.058  Sum_probs=39.1

Q ss_pred             CCCceeeeccceee-eccchhhhHHHHhhhhhhhceeEecchHHHHHHHHhh
Q 001812          747 FMEDVVGPVALIGT-VCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYE  797 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~-V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl  797 (1010)
                      .++||+  |++|+. |+.++.. +++.++|. .+-+|||+|.++|+..+.++
T Consensus       681 ~~~Gvl--vsel~~~v~~~~~~-~~~A~lg~-~~~~iVv~d~~~A~~ai~~L  728 (1486)
T PRK04863        681 RFGGVL--LSEIYDDVSLEDAP-YFSALYGP-ARHAIVVPDLSDAAEQLAGL  728 (1486)
T ss_pred             hcCCee--hhHhhhccCcchHH-HHHHHHHh-hhCeEEeCCHHHHHHHHHhc
Confidence            478999  999999 8666655 47888886 37799999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1010
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 2e-10
 Identities = 98/675 (14%), Positives = 205/675 (30%), Gaps = 186/675 (27%)

Query: 143 QQLEKYRQKSPSTIE-LLKETQCQELE--IDGVLPSSA---IAGQNPPREIVAVVRPASF 196
           +   +Y+       +  +    C++++     +L       I        +   +R    
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGTLRLFWT 70

Query: 197 ISSSASKNLVQKYI---VKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLY 253
           + S   + +VQK++   ++ + + LM    K E      +  +Y  +             
Sbjct: 71  LLSK-QEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDR---------- 118

Query: 254 IFEVGCKFPKLF----------QNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKL- 302
           ++     F K            + A        L E       K VL+ G    GK  + 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQA--------LLELRP---AKNVLIDGVLGSGKTWVA 167

Query: 303 ------LDTKERPELRV---------RVGSFLPPLSVACYDIYDNRIPFESKPQFLVKIK 347
                    + + + ++            + L  L    Y I  N   + S+      I 
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNI- 223

Query: 348 PSKIIKVEDKLKWNLSPDKLTLNIQDIL--VASSKLDEIRP-DYRATLVISSKDKPV--- 401
             +I  ++ +L+  L   K   N   +L  V ++K       +    ++++++ K V   
Sbjct: 224 KLRIHSIQAELR-RLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDF 280

Query: 402 -SVSIPCRVTPGSLKNVAVHPQNLGIL----------LPGSVIKM--LKLEMFDAFYNNV 448
            S +    ++           +   +L          LP  V+     +L +        
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-- 338

Query: 449 KKGLEVELNVDGFCIEDQLGLRRKVDGYGCIDLSGLLKVKAGYGKNVSLSVLSDNGVIFK 508
                     DG    D     + V+   C  L+ +++         SL+VL      ++
Sbjct: 339 ----------DGLATWDNW---KHVN---CDKLTTIIES--------SLNVLEPA--EYR 372

Query: 509 QDFQTEKRELRVISGVPECCTVGSQLEDITFEIVDSKGAVDVTIHDDDKSGQSHTLTIKS 568
           + F      L V    P      + +  I   ++         +   +K      L   S
Sbjct: 373 KMFD----RLSVF---PP----SAHIPTILLSLIWFDVIKSDVMVVVNK------LHKYS 415

Query: 569 DVINTENSIRYAFRQGRCTVPAISLPQNEGCFCFVATHSQYTELNISIKVPIVRAPK-LE 627
            V                ++P+I L                  L+ SI V     PK  +
Sbjct: 416 LVEKQPKESTI-------SIPSIYLE-------LKVKLENEYALHRSI-VDHYNIPKTFD 460

Query: 628 SDDIRTPCSDGKVFLLEGPSPIKHVGNHMVPI--------MKIV----NELESEVRNYGL 675
           SDD+  P  D   +         H+G+H+  I         ++V      LE ++R+   
Sbjct: 461 SDDLIPPYLDQYFY--------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 676 CIGRHEKALKLLNDQKM----------EVEEVLSKLQ---VSVEPYSLLTKE-EIIRRI- 720
                   L  L   K           + E +++ +      +E   + +K  +++R   
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 721 ----KSIYQSAASVI 731
               ++I++ A   +
Sbjct: 573 MAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 68/474 (14%), Positives = 126/474 (26%), Gaps = 154/474 (32%)

Query: 24  NIKPLVISTDVARVHKVVKKKGAMWKSGQKVKLLKGAYAGIHNNDVYATIEYFVIEGLQG 83
           N   +    +V+R+   +K + A+      ++L       I                  G
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQAL------LELRPAKNVLID-----------------G 157

Query: 84  DAG-GE---ARIICRPLAV------------------PD------EKGCVLAVNNGNASL 115
             G G+   A  +C    V                  P+      +K       N  +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 116 HIGSSLSLPIGVIDSE-----------KCVPVNKNVWDQQLEKY-----------RQKSP 153
              S++ L I  I +E            C+ V  NV + +               R K  
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ- 276

Query: 154 STIELLKETQCQELEIDGVLPS----------SAIAGQNP---PREIVAVVRP--ASFIS 198
              + L       + +D    +                 P   PRE++    P   S I+
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIA 334

Query: 199 SSASKNLVQ----KYIVKNSSEMLMEVKFKCEDENLEDVVPLYTARVAPSSRKGYQGLYI 254
            S    L      K++  +    ++E      +                  RK +  L +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------------RKMFDRLSV 380

Query: 255 FEVGCKFP-----KLFQNAGAYTFSFHLTETSCKSCEKKVLVKGSSEVGKWKL----LDT 305
           F      P      ++ +                   K  LV+   +     +    L+ 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 306 K----ERPEL-RVRVGSFLPPLSVACYDIYDNRIPFESKPQF------LVKIKPSKIIK- 353
           K        L R  V  +  P     +D  D   P+  +  +      L  I+  + +  
Sbjct: 436 KVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 354 ----------VEDKLK-----WNLSPDKLTLNIQDILVASSKLDEIRPDYRATL 392
                     +E K++     WN S   L   +Q +      + +  P Y   +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLV 545

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 67/406 (16%), Positives = 126/406 (31%), Gaps = 126/406 (31%)

Query: 687  LNDQKMEVEEVLSKLQ-----------VSVEPYSLLTKEEIIRRIKSIYQSAASVICCST 735
              + + + +++LS  +           V   P S+L+KEEI      I  S    +  + 
Sbjct: 11   TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIMSK-DAVSGTL 65

Query: 736  KEF--LCSKPRS---NFMEDVVGP-----VALIGTVCTNKLSRTLAEYLGEHQMLALVCR 785
            + F  L SK       F+E+V+       ++ I T      S     Y+ +   L    +
Sbjct: 66   RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQ 124

Query: 786  SFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVIC-LEGIRPYSGKFGS---- 840
             F       KY     + R         AL +    + ++I  + G    SGK  +    
Sbjct: 125  VFA------KY----NVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SGK--TWVAL 168

Query: 841  ---NDPQRKLALPAP----TLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETL- 892
                  + +  +        L   N P   +     ++   D +   R+   + ++  + 
Sbjct: 169  DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 893  -----LYRLFGKLQVYK---------------------------TR-KDMIEAHTCIRHG 919
                 L RL  K + Y+                           TR K + +  +     
Sbjct: 229  SIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 920  AVSLD---GGILKED--GIIS--LGC-----------GNPTICFPI---VRTRISTQSIE 958
             +SLD     +  ++   ++   L C            NP     I   +R  ++T   +
Sbjct: 288  HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WD 345

Query: 959  ALKQIEEKKLELDGIMQLIQESNKALEKDLEKLKNSEDKFNSFMDL 1004
              K +   KL               +E  L  L+ +E +   F  L
Sbjct: 346  NWKHVNCDKL------------TTIIESSLNVLEPAEYR-KMFDRL 378

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1010
d1gxja_	161	Smc hinge domain {Thermotoga maritima [TaxId: 2336	99.87

>d1gxja_ d.215.1.1 (A:) Smc hinge domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Smc hinge domain
superfamily: Smc hinge domain
family: Smc hinge domain
domain: Smc hinge domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=2.8e-22  Score=171.58  Aligned_cols=141  Identities=24%  Similarity=0.294  Sum_probs=120.9

Q ss_pred             CCCCEEEECCCEEEECCCHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCEEEEE
Q ss_conf             78860141022044246224348887531310222673366878999972311885100001344531176669906897
Q 001812          747 FMEDVVGPVALIGTVCTNKLSRTLAEYLGEHQMLALVCRSFEAAFALEKYEQDGTIDRKCALHATAAALGKSIDGRYLVI  826 (1010)
Q Consensus       747 ~l~GIiGvVAeLg~V~d~~lsa~LseyLGietmL~IVv~s~e~ak~le~yl~~g~id~~~~lh~~~~s~Kr~~~GRaTFL  826 (1010)
                      ..+||+|+|++|++|+++| ..+++.+||. .+.+|||+|.+.|+.++.|+                  ++++.||+||+
T Consensus        15 ~~~gv~G~v~dli~v~~~y-~~Ave~aLG~-~l~~vVV~~~~~A~~~i~~l------------------k~~~~Gr~tfi   74 (161)
T d1gxja_          15 RFPGLVDVVSNLIEVDEKY-SLAVSVLLGG-TAQNIVVRNVDTAKAIVEFL------------------KQNEAGRVTIL   74 (161)
T ss_dssp             GCTTEEEEHHHHCBCCGGG-HHHHHHHHGG-GGGCEEESSHHHHHHHHHHH------------------HHHTCCCEEEE
T ss_pred             CCCCCEEEHHHHCCCCHHH-HHHHHHHHHH-HHCEEEECCHHHHHHHHHHH------------------HHCCCCEEEEE
T ss_conf             2799558788827608879-9999999636-54059978799999999997------------------43258618999


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEECH
Q ss_conf             51797889999999981001359999999999999705987213213533321011368871586999861264998214
Q 001812          827 CLEGIRPYSGKFGSNDPQRKLALPAPTLPKGNIPAGFVGYAVNMVNLDDHHMHIRTSAGNGLRETLLYRLFGKLQVYKTR  906 (1010)
Q Consensus       827 PLd~IRP~~~~~~~~dpQr~L~L~~P~L~~g~~~~GFIGyAVNLI~~D~k~~~~~T~~g~GLRetIF~~LFG~tlVfeT~  906 (1010)
                      ||+.+++....                .+.....+|++++|.|+|++|+++.            .++.+|||+++|++  
T Consensus        75 pl~~i~~~~~~----------------~~~~~~~~~~v~~~~dlV~~~~~~~------------~~~~~llg~~~iv~--  124 (161)
T d1gxja_          75 PLDLIDGSFNR----------------ISGLENERGFVGYAVDLVKFPSDLE------------VLGGFLFGNSVVVE--  124 (161)
T ss_dssp             ETTTCCCCCCC----------------CTTGGGSTTEEEEHHHHCBCCGGGH------------HHHHHHHTTCEEES--
T ss_pred             ECCCCCCCCCC----------------CCCCCCCCCCCHHHHHHCCCCHHHH------------HHHHHHCCCEEEEC--
T ss_conf             65543465321----------------1100037773332887433888899------------99999859989999--


Q ss_pred             HCHHHHHHHHC---CC--EEECCCCEEECCCEEEECC
Q ss_conf             31999997502---85--6971484430684288266
Q 001812          907 KDMIEAHTCIR---HG--AVSLDGGILKEDGIISLGC  938 (1010)
Q Consensus       907 edM~~A~~~i~---~g--iVTLDGeIIe~sGaiTGGs  938 (1010)
                       +++.|+.++.   .+  +||+|||+++++|.||||.
T Consensus       125 -~l~~A~~l~~~~~~~~~~VT~dGd~~~~~G~i~GG~  160 (161)
T d1gxja_         125 -TLDDAIRMKKKYRLNTRIATLDGELISGRGAITGGR  160 (161)
T ss_dssp             -CHHHHHHHHHHHTCCSCEEETTSCEECTTSCEEEEE
T ss_pred             -CHHHHHHHHHHCCCCCEEEECCCCEECCCEEEECCC
T ss_conf             -999999999864999759969983898986683799