Citrus Sinensis ID: 001814

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010
MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
cccccccccccccccccccccEEEEccccccHHHHHHHHcccccccccccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEccccccEEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccEEEEHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEccccccEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccEEEEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccHHHHHHcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEccccccccccccEEEEEEEcccEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccEEccccEEEEEEcccccccccEEEcccccccccccccccccccccccccccEEEEEcccccHHHHHHHHcccccc
ccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccEEEEEEEcccEEEEEEccccccEEEEEcccccEEEEEEccccccccccccHHccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEccccEEEEEEccEEEEEEcHHHHccEEEEcccccccccccccccccccccEEccccHEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEccccccccccccccccccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHEEccccccccccccccccccccccccccccEHHHHcccccccccccccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccEccccEEEEEEEcccccccccccEEEEEEEcccEEEEccHccHHHHHHHccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEcccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccEEEEcHHcHHEEEEHHHHEEcccc
mkkgkgrnngllpnsLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVtwagfdrleygpsVFKQVLLLGYQNGFQVLDVedasnfnelvskrdgpvsflqmqpfpvkddgcegfrkLHPFLLVVagedtntlapgqnrshlggvrdgmmdsqsgncvnsptavrFYSFQSHCYEHVLRFRSsvcmvrcsprIVAVGLATQIYCFdaltlenkfsvltypvpqlagqgavginvgygpmavgprwLAYASNTlllsnsgrlspqnltpsgvspstspggsSLVARYAMEHSKQFAAGLSKTLSKYCQellpdgssspvspnsvwkvgrhagadmdnagiVVVKDFVTRAIISQFkahtspisalcfdpsgtlLVTASVYgnninifrimpscmrsgsgnhkydwnsshVHLYKLHRGITSATIQDICFSHYSQWIAIVSskgtchvfvlspfggdsgfqtlssqggdpylfpvlslpwwctssgiseqqcvlppppvtlsVVSRIKyssfgwlntvsnasassmgkvfvpsgAVAAVFHNSIAHSSQHVNSRTNSLEHLlvytpsgyvvqhellpsigmgpsddgsRIRAASLMCLqeddlqvrvepvqwwdvcrrsdwpereefiseatcdghgaveifqnksdcednygidfldindcivekstfkncsvksyershwYLSNAEvqmssgrlpiwqsskisffkmdspranthasgefeieKVSVHEVEIKrkellpvfdhfqcikpswnnrglaeekrplspssgpyqaeDKIAQQTvichsnpaslsstesseggssrrienlldldqvnndklyvptgqtlneIYNGRHEVTMVEsstlnkrcldivstspehsendnphvnnhipnglpslesnlpsagrddTIVAVSMLGadyydshmgiimedralpllscpvnlgvslrEEHCKIVeqnglckstdvvnddinggnshceskkleedaeddeMLGGMFAFFEEGEKLKLKLQQFFNCYNI
mkkgkgrnngllpnSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGedtntlapgqnRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLpdgssspvspnSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQeddlqvrvepvqwwdVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHsnpaslsstesseggsSRRIENlldldqvnndKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSpehsendnphVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVeqnglckstdvVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
MKKGKGRNNGLLPNSLKIISSCLKtvstnastvastvrsagasvaasisnasEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNltpsgvspstspggsslvARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCvlppppvtlsvvsRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPAslsstesseggssRRIENLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
***************LKIISSCLKTVS***************************LKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDT**************************CVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLL**********************************************L*KYC****************VWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM*******RIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFK*************FEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWN*******************************************************LDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDI************************************DTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDD**********************LGGMFAFFEEGEKLKLKLQQFFNCY**
**********************************************************VTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPF************LHPFLLVVAGEDT*****************************SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLA**********YGPMAVGPRWLAYASNTLL*************************SSLVARYAMEHSKQFAAGLSKTLSKYCQELLP**********************MDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCM************SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSP*********************************IS**QCVL****************************************AVAAVFHNSIAH***H***RTNSLEHLLVYTPSGYVVQHELLP*****************************VEPVQWWDVCRRSDWP****FI**ATCDGHGAVEIFQNKSDCEDN******************************WYLSNAEVQMSSGRLPIWQSSKISFFKMD************EIEKVSVHEVEIKRKELLPVFD**********************************************************************************************************************************************************************MEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDD***********************GGMFAFFEEGEKLKLKLQQFFNCYNI
MKKGKGRNNGLLPNSLKIISSCLKTV*******************ASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQN*************GSSLVARYAMEHSKQFAAGLSKTLSKYCQELL*********PNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLA*************QAEDKIAQQTVICHSNP**************RRIENLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVS*********NPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
************PNSLKIISSCLKTVSTN************************DLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNR**LGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSG***P*N********STSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLP*******************GADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMR***********SSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSG*********************WCTSSG*SEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVS********KVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSI******************LQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVE*FQNKSDC****G************************ERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCI**********************************************************NLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDI******************DEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEKRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVNNDKLYVPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLESNLPSAGRDDTIVAVSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLREEHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKLKLKLQQFFNCYNI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1010 2.2.26 [Sep-21-2011]
Q8CCN5928 Breast carcinoma-amplifie yes no 0.335 0.365 0.275 6e-36
Q9H6U6928 Breast carcinoma-amplifie yes no 0.336 0.366 0.271 4e-35
Q8SY411122 Breast carcinoma-amplifie yes no 0.267 0.240 0.307 3e-28
Q4P4N1453 Autophagy-related protein N/A no 0.145 0.324 0.315 3e-10
Q7SG97310 SVP1-like protein 2 OS=Ne N/A no 0.098 0.319 0.336 2e-06
Q75F47537 Autophagy-related protein yes no 0.249 0.469 0.236 2e-06
P43601500 Autophagy-related protein yes no 0.242 0.49 0.231 3e-06
A7A258500 Autophagy-related protein N/A no 0.242 0.49 0.231 3e-06
Q6FXC1445 SVP1-like protein 2 OS=Ca yes no 0.088 0.2 0.327 4e-06
Q6BUX9432 SVP1-like protein 2 OS=De yes no 0.092 0.215 0.3 5e-06
>sp|Q8CCN5|BCAS3_MOUSE Breast carcinoma-amplified sequence 3 homolog OS=Mus musculus GN=Bcas3 PE=1 SV=2 Back     alignment and function desciption
 Score =  153 bits (387), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 194/410 (47%), Gaps = 71/410 (17%)

Query: 77  VLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFP-VKDDGCEGFRKLHPFLLV 135
           ++++GY +G QV  +  +    EL S R GPV   ++ P P +    C+ F +  P L V
Sbjct: 92  LVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGV 151

Query: 136 VAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSHCYEHVLRFRSSV 195
                ++   P                     CV+       YS ++      ++F++ +
Sbjct: 152 CKSIGSSGTTPPY------------------CCVD------LYSLRTGEMVKSIQFKTPI 187

Query: 196 CMVRCSPRIVAVGLATQIYCFDALTLENKFSVLT-YPVPQLAGQGAVGINVGYGPMAVGP 254
             + C+ RI+ V L  +I  FD+ T   KF V + YP P        G N+   P+A+G 
Sbjct: 188 YDLHCNKRILVVVLQEKIAAFDSCTFTKKFFVTSCYPCP--------GPNM--NPIALGS 237

Query: 255 RWLAYASNTLLLSNSGRLSP-----QNLTPSGVSPS-TSPGGSSLVARYAMEHSKQFAAG 308
           RWLAYA N L+  +  R        Q+ T + +S + T   G ++V +   + +    +G
Sbjct: 238 RWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGLTMVGKVVTQLTGTLPSG 297

Query: 309 LSK-TLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAG---IVVVKDFVTRAIISQ 364
           +++  ++ +C     +   SP+ P  +  +      D +  G   ++V +D  +  I++ 
Sbjct: 298 VTEDDVALHC-----NSRRSPLVPGIITVI------DTETVGEGQVLVSEDSDSDGIVAH 346

Query: 365 FKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHV---H 421
           F AH  P+  + F+ SG LLVT    G++ ++F+I+            + W+SS     H
Sbjct: 347 FPAHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQIL-----------THPWSSSQCAVHH 395

Query: 422 LYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
           LY LHRG T A +QDICFSH  +W+ + + +GT HVF ++P+GG    +T
Sbjct: 396 LYTLHRGETEAKVQDICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRT 445

Mus musculus (taxid: 10090)
>sp|Q9H6U6|BCAS3_HUMAN Breast carcinoma-amplified sequence 3 OS=Homo sapiens GN=BCAS3 PE=1 SV=3 Back     alignment and function description
>sp|Q8SY41|BCAS3_DROME Breast carcinoma-amplified sequence 3 homolog OS=Drosophila melanogaster GN=CG43154 PE=1 SV=1 Back     alignment and function description
>sp|Q4P4N1|ATG18_USTMA Autophagy-related protein 18 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ATG18 PE=3 SV=1 Back     alignment and function description
>sp|Q7SG97|HSV2_NEUCR SVP1-like protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=hsv-2 PE=3 SV=1 Back     alignment and function description
>sp|Q75F47|ATG18_ASHGO Autophagy-related protein 18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ATG18 PE=3 SV=1 Back     alignment and function description
>sp|P43601|ATG18_YEAST Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG18 PE=1 SV=1 Back     alignment and function description
>sp|A7A258|ATG18_YEAS7 Autophagy-related protein 18 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG18 PE=3 SV=1 Back     alignment and function description
>sp|Q6FXC1|HSV2_CANGA SVP1-like protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=HSV2 PE=3 SV=1 Back     alignment and function description
>sp|Q6BUX9|HSV2_DEBHA SVP1-like protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=HSV2 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1010
2555675941016 breast carcinoma amplified sequence, put 0.982 0.976 0.682 0.0
225436857988 PREDICTED: uncharacterized protein LOC10 0.963 0.984 0.665 0.0
296086668951 unnamed protein product [Vitis vinifera] 0.891 0.946 0.688 0.0
356504886979 PREDICTED: uncharacterized protein LOC10 0.961 0.991 0.634 0.0
147779793 1237 hypothetical protein VITISV_008540 [Viti 0.729 0.595 0.707 0.0
356570542950 PREDICTED: uncharacterized protein LOC10 0.931 0.990 0.603 0.0
449462290967 PREDICTED: uncharacterized protein LOC10 0.930 0.972 0.562 0.0
297843152958 hypothetical protein ARALYDRAFT_333664 [ 0.931 0.982 0.541 0.0
359487960986 PREDICTED: uncharacterized protein LOC10 0.938 0.961 0.562 0.0
240253994959 autophagy 18G-like protein [Arabidopsis 0.922 0.971 0.538 0.0
>gi|255567594|ref|XP_002524776.1| breast carcinoma amplified sequence, putative [Ricinus communis] gi|223535960|gb|EEF37619.1| breast carcinoma amplified sequence, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1324 bits (3426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1017 (68%), Positives = 801/1017 (78%), Gaps = 25/1017 (2%)

Query: 1    MKKGKGRNNGLLPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVT 60
            MKKGK +NNG+LPNSL+IISSCLKTVSTNA+TVASTVRSA  +  A+  ++SED KDQV+
Sbjct: 1    MKKGKSKNNGILPNSLRIISSCLKTVSTNATTVASTVRSA-GASVAASISSSEDHKDQVS 59

Query: 61   WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
            WAGFDRLE  PSV K+VLLLGY NGFQVLDVEDASN+ ELVSKRDGPVSFLQMQPFP K 
Sbjct: 60   WAGFDRLELSPSVIKRVLLLGYHNGFQVLDVEDASNYRELVSKRDGPVSFLQMQPFPSKS 119

Query: 121  DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
            DG E FR  HP LLVVAG+DTN++  GQN  HLGGV R+G M+SQ  NC++SPT+VRFYS
Sbjct: 120  DGHERFRSSHPLLLVVAGDDTNSINVGQNPGHLGGVGREGNMESQPRNCISSPTSVRFYS 179

Query: 180  FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
             +SHCY HVLRFRS+V MVRCSPRI+AVGLATQIYC DALTLE+KFSVLTYPVPQLAGQG
Sbjct: 180  LRSHCYVHVLRFRSAVRMVRCSPRIIAVGLATQIYCIDALTLESKFSVLTYPVPQLAGQG 239

Query: 240  AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNLTPS-GVSPSTSPGGSSLVARYA 298
              GINVGYGPMAVGPRWLAYASN  L+SN+ RLS Q+LTPS GVSPSTSPGG+SLVARYA
Sbjct: 240  --GINVGYGPMAVGPRWLAYASNNPLVSNTTRLSAQSLTPSPGVSPSTSPGGTSLVARYA 297

Query: 299  MEHSKQFAAGL-------SKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
            ME SKQ AAG+        KT SKYCQELLPDGS+SPVSP+S WKVGR AG+DMD AG+V
Sbjct: 298  MESSKQLAAGIINLGDMGYKTFSKYCQELLPDGSNSPVSPSSGWKVGRLAGSDMDTAGMV 357

Query: 352  VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
            VVKDFV+R +ISQFKAHTSPISALCFDPSGTLLVTAS+YGNNINIFRIMPSC R G G  
Sbjct: 358  VVKDFVSRVVISQFKAHTSPISALCFDPSGTLLVTASIYGNNINIFRIMPSCSRGGLGVQ 417

Query: 412  KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
             YDW+SSHVHLYKLHRG+TSA IQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQ+
Sbjct: 418  SYDWSSSHVHLYKLHRGMTSAMIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQS 477

Query: 472  LSSQGGDPYLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNAS 531
            L+S G +P L+P+LSLPWW TSS +  QQ   PPPPV+LSVVSRIKYSSFGWLNTV NA+
Sbjct: 478  LNSMGVEPSLYPILSLPWWSTSSWMINQQPYPPPPPVSLSVVSRIKYSSFGWLNTVGNAT 537

Query: 532  ASSMG-KVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGM 590
             S+   KVFVPSGAVAAVFHNSI  S+QHVNSR N LEHLLVYTPSG+VVQHELLPSIG+
Sbjct: 538  GSAXSRKVFVPSGAVAAVFHNSICQSAQHVNSRANPLEHLLVYTPSGHVVQHELLPSIGL 597

Query: 591  GPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEI 650
               + GS+I+ AS + +QEDD++V+VEPVQWWDVCRRSDW EREE +  +T +G  AVEI
Sbjct: 598  ELGESGSKIQPASFVHIQEDDMKVKVEPVQWWDVCRRSDWSEREESVIGST-NGQDAVEI 656

Query: 651  FQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQS 710
               K   E+N+ + FLD N  + EK +  + S+K +E+SHWYLSNAEVQ+SS RLPIWQ 
Sbjct: 657  ITRKPSGENNFEMVFLDTNGDVNEKKSSISYSMKPHEKSHWYLSNAEVQISSVRLPIWQK 716

Query: 711  SKISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEE 770
            SKI F+ MDSPR N +  GEFEIEKV + EVE+KRKELLPVFDHF   K  WN+RG+A  
Sbjct: 717  SKICFYVMDSPRVN-YNDGEFEIEKVPIQEVELKRKELLPVFDHFHSFKSGWNDRGIAVA 775

Query: 771  KRPLSPSSGPYQAEDKIAQQTVICHSNPASLSSTESSEGGSSRRIENLLDLDQVNNDKLY 830
            +   SPSS  +QAE K  Q+T+ICHS PASLSST SSE GSSRRIENLLDLDQ+N +K Y
Sbjct: 776  RYIHSPSSEAHQAEGKSTQETIICHSKPASLSSTGSSECGSSRRIENLLDLDQINCEKSY 835

Query: 831  VPTGQTLNEIYNGRHEVTMVESSTLNKRCLDIVSTSPEHSENDNPHVNNHIPNGLPSLES 890
            +P  QTLN+ Y        ++S T+N+  L I S   EH +N +  V+N I NGLPS  +
Sbjct: 836  IPICQTLNDYYQETRGGPGLQSGTINQNSLTIASLPSEHPKNGDASVDNCIENGLPSSPN 895

Query: 891  NLPSAGRDDTIVA----------VSMLGADYYDSHMGIIMEDRALPLLSCPVNLGVSLRE 940
             LP AGR     A          VS   AD YDS + I+M   ALP+   PV   +S +E
Sbjct: 896  YLPPAGRIFAGEAPTLNIKRTGDVSASPADNYDSQINILMGVPALPVAENPVGFELSFQE 955

Query: 941  EHCKIVEQNGLCKSTDVVNDDINGGNSHCESKKLEEDAEDDEMLGGMFAFFEEGEKL 997
             H K ++ +  C ST+VV DD++  +SHCE +K EED E+DE LGGMFAF EEG+KL
Sbjct: 956  GHYKALDLDRCCTSTEVVTDDVDSSSSHCEKEKPEEDGENDEFLGGMFAFSEEGKKL 1012

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225436857|ref|XP_002270856.1| PREDICTED: uncharacterized protein LOC100245938 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086668|emb|CBI32303.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504886|ref|XP_003521225.1| PREDICTED: uncharacterized protein LOC100785780 [Glycine max] Back     alignment and taxonomy information
>gi|147779793|emb|CAN64435.1| hypothetical protein VITISV_008540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570542|ref|XP_003553444.1| PREDICTED: uncharacterized protein LOC100818381 [Glycine max] Back     alignment and taxonomy information
>gi|449462290|ref|XP_004148874.1| PREDICTED: uncharacterized protein LOC101218955 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297843152|ref|XP_002889457.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] gi|297335299|gb|EFH65716.1| hypothetical protein ARALYDRAFT_333664 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359487960|ref|XP_003633682.1| PREDICTED: uncharacterized protein LOC100250287 [Vitis vinifera] Back     alignment and taxonomy information
>gi|240253994|ref|NP_171837.7| autophagy 18G-like protein [Arabidopsis thaliana] gi|27311609|gb|AAO00770.1| Unknown protein [Arabidopsis thaliana] gi|332189445|gb|AEE27566.1| autophagy 18G-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1010
TAIR|locus:2020853959 ATG18G "AT1G03380" [Arabidopsi 0.825 0.869 0.561 1.4e-255
TAIR|locus:2199512927 ATG18H "AT1G54710" [Arabidopsi 0.625 0.681 0.539 2e-213
TAIR|locus:2157523763 G18F "AT5G54730" [Arabidopsis 0.275 0.364 0.420 6.2e-68
FB|FBgn02626841122 CG43154 [Drosophila melanogast 0.373 0.336 0.288 3e-27
ZFIN|ZDB-GENE-040426-1257910 bcas3 "breast carcinoma amplif 0.203 0.226 0.322 9.5e-26
UNIPROTKB|F1P1V9803 BCAS3 "Uncharacterized protein 0.206 0.260 0.298 3.9e-23
UNIPROTKB|F1S209820 BCAS3 "Uncharacterized protein 0.208 0.257 0.283 1.4e-22
MGI|MGI:2385848928 Bcas3 "breast carcinoma amplif 0.206 0.225 0.285 7.1e-22
UNIPROTKB|Q9H6U6928 BCAS3 "Breast carcinoma-amplif 0.206 0.225 0.280 1.1e-21
RGD|1560788803 Bcas3 "breast carcinoma amplif 0.206 0.260 0.280 1.2e-21
TAIR|locus:2020853 ATG18G "AT1G03380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2386 (845.0 bits), Expect = 1.4e-255, Sum P(3) = 1.4e-255
 Identities = 478/851 (56%), Positives = 577/851 (67%)

Query:     1 MKKGKGRNNGLLPNSLKIISSCLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDLKDQVT 60
             MKKGKG+N+GLLPNS KIISSCLK                            +D KDQVT
Sbjct:     2 MKKGKGKNSGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISAAEDD-KDQVT 60

Query:    61 WAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNELVSKRDGPVSFLQMQPFPVKD 120
             WAGF  LE G  V + VLLLGYQNGFQV DVEDASNFNELVSKR GPVSFLQMQP P + 
Sbjct:    61 WAGFGILELGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS 120

Query:   121 DGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGV-RDGMMDSQSGNCVNSPTAVRFYS 179
                EGF   HP LLVVAG++TN    G + S  G + RDG  DS++G+ +N PT VRFYS
Sbjct:   121 GDHEGFWNSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYS 180

Query:   180 FQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQG 239
              +SH Y +VLRFRSSVCM+RCS R+VAVGLA QIYC DALTLENKFSVLTYPVPQ   QG
Sbjct:   181 LRSHSYVYVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQG 240

Query:   240 AVGINVGYGPMAVGPRWLAYASNTLLLSNSGRLSPQNXXXXXXXX-XXXXXXXXXXARYA 298
                +NVGYGPMAVGPRWLAYAS + +   +GRLSPQ                    ARYA
Sbjct:   241 TTRVNVGYGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYA 300

Query:   299 MEHSKQFAAGLS-------KTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIV 351
             ME SKQ A GL        KTLSKYCQ++LPDGS+SP SPN++WKVG  +G+D +NAG+V
Sbjct:   301 MESSKQLANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMV 360

Query:   352 VVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNH 411
              VKD V+ A++SQFKAHTSPISALCFDPSGTLLVTASV GNNIN+F+IMPS   +  G+ 
Sbjct:   361 AVKDLVSGALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDL 420

Query:   412 KYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQT 471
              Y+W SSHVHL+KLHRGITSA +QDICFS  SQW+AI+SSKGTCH+FVL+  G D+ FQ 
Sbjct:   421 SYEWESSHVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQP 480

Query:   472 LSSQGGDPYLFPVLSLPWWCTSSGISEQQCXXXXXXXXXXXXXRIKYSSFGWLNTVSNAS 531
                +G +P   P  SLPWW T S  S QQ              RIKYSSFGWLNTVSNA+
Sbjct:   481 C--EGEEPTRLPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGWLNTVSNAT 538

Query:   532 ASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRTNSLEHLLVYTPSGYVVQHELLPSIGMG 591
              ++ GKVFVPSGAVAAVFH S+ H  Q +NSRTN+LEH+LVYTPSG+VVQHELLPS+   
Sbjct:   539 TAATGKVFVPSGAVAAVFHKSVTHDLQ-LNSRTNALEHILVYTPSGHVVQHELLPSVCTE 597

Query:   592 PSDDGSRIRAASLMCLQEDDLQVRVEPVQWWDVCRRSDWPEREEFISEATCDGHGAVEIF 651
               ++G R++  S + +QEDDL+V+VEP+QWWDVCRRSDW E EE + ++  +    +E  
Sbjct:   598 SPENGLRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETV 657

Query:   652 QNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSS 711
              N     ++  +  LD+N    E    K+CS K  ERSH YLSN EV+++SG LP+WQ+S
Sbjct:   658 SNHLTSHEDACLS-LDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNS 716

Query:   712 KISFFKMDSPRANTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNRGLAEEK 771
             KISF  MDSPR ++   GEFEIEKV  HE+EIK+K+LLPVFDHF   K +  +R     K
Sbjct:   717 KISFHVMDSPRDSSSTGGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDR--FSMK 774

Query:   772 RPLSPSSGPYQAEDKIAQQTVICHSNPAXXXXXXXXXXXXXRRIENLLDLDQVNND-KLY 830
                + ++G +Q   KI Q  + CHS P              +++ENL D D ++N  K  
Sbjct:   775 CYHTSATGSHQVNGKICQDIINCHSKPGSIESAESSEEGSTKQMENLHDSDHMSNSIKSS 834

Query:   831 VPTGQTLNEIY 841
             +P   T+N IY
Sbjct:   835 LPLYPTVNGIY 845
GO:0003674 "molecular_function" evidence=ND
GO:0042594 "response to starvation" evidence=IEP
TAIR|locus:2199512 ATG18H "AT1G54710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157523 G18F "AT5G54730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0262684 CG43154 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1257 bcas3 "breast carcinoma amplified sequence 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P1V9 BCAS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1S209 BCAS3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385848 Bcas3 "breast carcinoma amplified sequence 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6U6 BCAS3 "Breast carcinoma-amplified sequence 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1560788 Bcas3 "breast carcinoma amplified sequence 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1010
pfam12490245 pfam12490, BCAS3, Breast carcinoma amplified seque 2e-85
smart0032040 smart00320, WD40, WD40 repeats 0.001
cd00200289 cd00200, WD40, WD40 domain, found in a number of e 0.003
pfam0040039 pfam00400, WD40, WD domain, G-beta repeat 0.004
>gnl|CDD|221602 pfam12490, BCAS3, Breast carcinoma amplified sequence 3 Back     alignment and domain information 
 Score =  274 bits (703), Expect = 2e-85
 Identities = 113/253 (44%), Positives = 149/253 (58%), Gaps = 15/253 (5%)

Query: 505 PPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQHVNSRT 564
           PPPVTLSVVSRIK  + GWL TV+ A++S+ GK  V SGAVA+VFHN    +S+  +   
Sbjct: 1   PPPVTLSVVSRIKNGNSGWLGTVTGAASSATGKPLVVSGAVASVFHNCSGKNSESADGIK 60

Query: 565 -NSLEHLLVYTPSGYVVQHELLPSIGMGPSDDGSRIRAASLMCLQEDDLQVRVEPVQWWD 623
            NS +HLLV++PSG+++Q+ L PS+G G S +  R    S   + E +L++ VEPVQ WD
Sbjct: 61  SNSKDHLLVFSPSGHLIQYLLRPSVG-GDSGEIPRNGVPSESQIDETELRLTVEPVQQWD 119

Query: 624 VCRRSDWPEREEFISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSV 683
           VCRRS+WPEREE ++    +     +             +    I+D  V K      S 
Sbjct: 120 VCRRSNWPEREENVAPLGENNPLDADAKVEPEVGRKGNSVHP--ISDSAVGK-----EST 172

Query: 684 KSYERSHWYLSNAEVQMSSGR-LPIWQSSKISFFKMDSPRANT-----HASGEFEIEKVS 737
            S E+ H YLSNAEVQ  SG   P+WQ  K SF+ M SP           SGE EIEK+ 
Sbjct: 173 SSEEKDHLYLSNAEVQTHSGPHRPLWQGPKFSFYVMQSPTGKELENSGSLSGEIEIEKLP 232

Query: 738 VHEVEIKRKELLP 750
             EVEI+RK+L+P
Sbjct: 233 TREVEIRRKDLVP 245

This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length. The proteins in this family have been shown to be proto-oncogenes implicated in the development of breast cancer. Length = 245
>gnl|CDD|197651 smart00320, WD40, WD40 repeats Back     alignment and domain information
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment Back     alignment and domain information
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1010
KOG2109788 consensus WD40 repeat protein [General function pr 100.0
PF12490251 BCAS3: Breast carcinoma amplified sequence 3 ; Int 100.0
KOG2110391 consensus Uncharacterized conserved protein, conta 100.0
KOG2111346 consensus Uncharacterized conserved protein, conta 100.0
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 99.9
KOG0263707 consensus Transcription initiation factor TFIID, s 99.89
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.87
KOG0315311 consensus G-protein beta subunit-like protein (con 99.87
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 99.87
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.86
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.83
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.81
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.81
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.81
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.8
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.8
KOG0295406 consensus WD40 repeat-containing protein [Function 99.79
KOG0286343 consensus G-protein beta subunit [General function 99.78
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.78
KOG0295406 consensus WD40 repeat-containing protein [Function 99.77
PLN00181793 protein SPA1-RELATED; Provisional 99.77
KOG0266456 consensus WD40 repeat-containing protein [General 99.75
KOG0315311 consensus G-protein beta subunit-like protein (con 99.75
PLN00181793 protein SPA1-RELATED; Provisional 99.74
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.73
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.72
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.71
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.71
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.71
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.7
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.7
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.7
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.69
KOG0266456 consensus WD40 repeat-containing protein [General 99.69
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.69
KOG0263707 consensus Transcription initiation factor TFIID, s 99.68
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.68
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.67
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.67
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.67
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.66
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.66
KOG0286343 consensus G-protein beta subunit [General function 99.66
PTZ00421493 coronin; Provisional 99.65
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.65
KOG0643327 consensus Translation initiation factor 3, subunit 99.65
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.63
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.63
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.63
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.62
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.62
PTZ00421493 coronin; Provisional 99.62
PTZ00420568 coronin; Provisional 99.61
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.61
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.6
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.6
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.6
KOG0645312 consensus WD40 repeat protein [General function pr 99.6
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.58
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.58
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.58
PTZ00420568 coronin; Provisional 99.57
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.56
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.55
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.55
KOG2055514 consensus WD40 repeat protein [General function pr 99.55
KOG0973942 consensus Histone transcription regulator HIRA, WD 99.54
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.54
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.54
KOG0293519 consensus WD40 repeat-containing protein [Function 99.54
KOG0296399 consensus Angio-associated migratory cell protein 99.53
KOG0283712 consensus WD40 repeat-containing protein [Function 99.52
KOG0645312 consensus WD40 repeat protein [General function pr 99.52
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.5
KOG0772641 consensus Uncharacterized conserved protein, conta 99.49
KOG1539910 consensus WD repeat protein [General function pred 99.49
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.48
KOG1539910 consensus WD repeat protein [General function pred 99.47
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.46
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.45
KOG2096420 consensus WD40 repeat protein [General function pr 99.43
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.41
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.41
KOG0772641 consensus Uncharacterized conserved protein, conta 99.41
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 99.4
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.4
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.4
KOG0289506 consensus mRNA splicing factor [General function p 99.4
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.39
KOG0301745 consensus Phospholipase A2-activating protein (con 99.38
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.37
KOG0269839 consensus WD40 repeat-containing protein [Function 99.37
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 99.37
KOG1274 933 consensus WD40 repeat protein [General function pr 99.37
KOG0643327 consensus Translation initiation factor 3, subunit 99.36
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.35
KOG0289506 consensus mRNA splicing factor [General function p 99.34
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.34
KOG0641350 consensus WD40 repeat protein [General function pr 99.33
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.33
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.33
KOG0267825 consensus Microtubule severing protein katanin p80 99.33
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 99.31
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.31
KOG0639705 consensus Transducin-like enhancer of split protei 99.31
KOG0308735 consensus Conserved WD40 repeat-containing protein 99.3
KOG1273405 consensus WD40 repeat protein [General function pr 99.3
KOG0268433 consensus Sof1-like rRNA processing protein (conta 99.29
KOG0293519 consensus WD40 repeat-containing protein [Function 99.27
KOG0294362 consensus WD40 repeat-containing protein [Function 99.27
KOG0301745 consensus Phospholipase A2-activating protein (con 99.27
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.27
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 99.26
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 99.26
KOG0270463 consensus WD40 repeat-containing protein [Function 99.25
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.25
KOG0296399 consensus Angio-associated migratory cell protein 99.24
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.23
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 99.23
PRK11028330 6-phosphogluconolactonase; Provisional 99.22
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.22
KOG0294362 consensus WD40 repeat-containing protein [Function 99.22
KOG2109788 consensus WD40 repeat protein [General function pr 99.21
KOG2096420 consensus WD40 repeat protein [General function pr 99.2
KOG2106626 consensus Uncharacterized conserved protein, conta 99.19
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.19
KOG0283712 consensus WD40 repeat-containing protein [Function 99.19
KOG4283397 consensus Transcription-coupled repair protein CSA 99.19
KOG0267825 consensus Microtubule severing protein katanin p80 99.18
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.18
KOG4283397 consensus Transcription-coupled repair protein CSA 99.18
KOG2106626 consensus Uncharacterized conserved protein, conta 99.16
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.14
KOG0300481 consensus WD40 repeat-containing protein [Function 99.13
KOG1063764 consensus RNA polymerase II elongator complex, sub 99.12
KOG1274933 consensus WD40 repeat protein [General function pr 99.1
KOG0641350 consensus WD40 repeat protein [General function pr 99.09
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 99.08
KOG2048691 consensus WD40 repeat protein [General function pr 99.08
KOG14081080 consensus WD40 repeat protein [Function unknown] 99.08
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 99.05
COG2319466 FOG: WD40 repeat [General function prediction only 99.04
KOG0646476 consensus WD40 repeat protein [General function pr 99.03
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.03
PRK01742429 tolB translocation protein TolB; Provisional 99.01
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 98.99
KOG0639705 consensus Transducin-like enhancer of split protei 98.99
KOG0646476 consensus WD40 repeat protein [General function pr 98.98
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 98.96
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 98.95
KOG4328498 consensus WD40 protein [Function unknown] 98.94
KOG2048691 consensus WD40 repeat protein [General function pr 98.94
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.92
KOG2055514 consensus WD40 repeat protein [General function pr 98.91
COG2319466 FOG: WD40 repeat [General function prediction only 98.89
PRK05137435 tolB translocation protein TolB; Provisional 98.89
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 98.88
KOG0322323 consensus G-protein beta subunit-like protein GNB1 98.87
PRK03629429 tolB translocation protein TolB; Provisional 98.86
KOG4328498 consensus WD40 protein [Function unknown] 98.85
KOG0269839 consensus WD40 repeat-containing protein [Function 98.83
KOG0270463 consensus WD40 repeat-containing protein [Function 98.82
KOG0302440 consensus Ribosome Assembly protein [General funct 98.81
KOG1063764 consensus RNA polymerase II elongator complex, sub 98.8
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.8
PRK11028330 6-phosphogluconolactonase; Provisional 98.8
KOG1963792 consensus WD40 repeat protein [General function pr 98.78
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 98.76
KOG1188376 consensus WD40 repeat protein [General function pr 98.76
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 98.73
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 98.72
KOG2110391 consensus Uncharacterized conserved protein, conta 98.7
PRK04922433 tolB translocation protein TolB; Provisional 98.69
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 98.69
KOG2111346 consensus Uncharacterized conserved protein, conta 98.68
PRK02889427 tolB translocation protein TolB; Provisional 98.68
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 98.66
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 98.65
KOG1273405 consensus WD40 repeat protein [General function pr 98.65
KOG0771398 consensus Prolactin regulatory element-binding pro 98.64
KOG06441113 consensus Uncharacterized conserved protein, conta 98.64
KOG1963792 consensus WD40 repeat protein [General function pr 98.63
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.63
KOG14451012 consensus Tumor-specific antigen (contains WD repe 98.58
KOG0302440 consensus Ribosome Assembly protein [General funct 98.58
KOG0303472 consensus Actin-binding protein Coronin, contains 98.56
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 98.55
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 98.54
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 98.51
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.51
KOG1188376 consensus WD40 repeat protein [General function pr 98.5
KOG15171387 consensus Guanine nucleotide binding protein MIP1 98.49
KOG0303472 consensus Actin-binding protein Coronin, contains 98.48
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 98.47
PRK00178430 tolB translocation protein TolB; Provisional 98.47
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.44
PRK01742429 tolB translocation protein TolB; Provisional 98.44
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 98.44
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 98.43
KOG3881412 consensus Uncharacterized conserved protein [Funct 98.41
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 98.4
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 98.37
PRK05137435 tolB translocation protein TolB; Provisional 98.37
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.35
KOG15171387 consensus Guanine nucleotide binding protein MIP1 98.35
PRK03629429 tolB translocation protein TolB; Provisional 98.34
KOG2139445 consensus WD40 repeat protein [General function pr 98.33
PRK04922433 tolB translocation protein TolB; Provisional 98.32
KOG14451012 consensus Tumor-specific antigen (contains WD repe 98.3
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 98.25
KOG0771398 consensus Prolactin regulatory element-binding pro 98.25
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 98.24
PRK02889427 tolB translocation protein TolB; Provisional 98.23
PRK04792448 tolB translocation protein TolB; Provisional 98.23
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 98.15
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 98.14
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 98.12
PRK01029428 tolB translocation protein TolB; Provisional 98.08
PRK04792448 tolB translocation protein TolB; Provisional 98.06
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 98.05
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 98.05
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.04
KOG4227609 consensus WD40 repeat protein [General function pr 98.03
KOG0322323 consensus G-protein beta subunit-like protein GNB1 98.03
KOG0649325 consensus WD40 repeat protein [General function pr 98.01
KOG0644 1113 consensus Uncharacterized conserved protein, conta 98.0
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 97.99
KOG1310758 consensus WD40 repeat protein [General function pr 97.97
KOG0300481 consensus WD40 repeat-containing protein [Function 97.95
KOG0649325 consensus WD40 repeat protein [General function pr 97.95
PRK00178430 tolB translocation protein TolB; Provisional 97.91
KOG2321703 consensus WD40 repeat protein [General function pr 97.86
KOG2315566 consensus Predicted translation initiation factor 97.86
KOG1272545 consensus WD40-repeat-containing subunit of the 18 97.84
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.84
PRK04043419 tolB translocation protein TolB; Provisional 97.83
KOG4227609 consensus WD40 repeat protein [General function pr 97.76
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 97.74
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.73
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 97.73
KOG3881412 consensus Uncharacterized conserved protein [Funct 97.72
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.71
KOG12401431 consensus Protein kinase containing WD40 repeats [ 97.57
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 97.55
KOG1310758 consensus WD40 repeat protein [General function pr 97.55
PRK01029428 tolB translocation protein TolB; Provisional 97.54
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.53
KOG4497447 consensus Uncharacterized conserved protein WDR8, 97.5
KOG2139445 consensus WD40 repeat protein [General function pr 97.48
KOG4547541 consensus WD40 repeat-containing protein [General 97.44
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 97.43
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 97.42
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 97.41
KOG1334559 consensus WD40 repeat protein [General function pr 97.41
KOG2321703 consensus WD40 repeat protein [General function pr 97.36
KOG12401431 consensus Protein kinase containing WD40 repeats [ 97.3
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 97.29
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 97.19
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 97.14
KOG4497447 consensus Uncharacterized conserved protein WDR8, 97.12
KOG4547541 consensus WD40 repeat-containing protein [General 97.11
KOG2315566 consensus Predicted translation initiation factor 97.1
KOG1409404 consensus Uncharacterized conserved protein, conta 97.09
KOG2314698 consensus Translation initiation factor 3, subunit 97.07
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 96.99
PRK04043419 tolB translocation protein TolB; Provisional 96.95
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 96.85
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 96.85
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 96.83
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 96.81
smart0032040 WD40 WD40 repeats. Note that these repeats are per 96.8
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 96.6
KOG19121062 consensus WD40 repeat protein [General function pr 96.54
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 96.29
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 96.19
COG4946668 Uncharacterized protein related to the periplasmic 96.15
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 96.15
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 96.02
COG4946668 Uncharacterized protein related to the periplasmic 95.94
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 95.86
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 95.85
KOG12751118 consensus PAB-dependent poly(A) ribonuclease, subu 95.76
KOG1334559 consensus WD40 repeat protein [General function pr 95.75
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 95.74
KOG19121062 consensus WD40 repeat protein [General function pr 95.71
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 95.63
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 95.5
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 95.49
PLN029191057 haloacid dehalogenase-like hydrolase family protei 95.16
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 95.05
smart0032040 WD40 WD40 repeats. Note that these repeats are per 94.77
KOG0280339 consensus Uncharacterized conserved protein [Amino 94.55
KOG4532344 consensus WD40-like repeat containing protein [Gen 94.0
KOG41901034 consensus Uncharacterized conserved protein [Funct 93.8
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 93.76
KOG4415247 consensus Uncharacterized conserved protein [Funct 93.59
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 93.56
KOG4714319 consensus Nucleoporin [Nuclear structure] 93.48
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 93.43
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 93.39
KOG3621726 consensus WD40 repeat-containing protein [General 93.33
KOG41901034 consensus Uncharacterized conserved protein [Funct 93.11
KOG10642439 consensus RAVE (regulator of V-ATPase assembly) co 93.1
KOG4532344 consensus WD40-like repeat containing protein [Gen 92.97
KOG03091081 consensus Conserved WD40 repeat-containing protein 92.95
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 91.68
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 91.05
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 90.92
KOG0280339 consensus Uncharacterized conserved protein [Amino 90.91
COG0823425 TolB Periplasmic component of the Tol biopolymer t 90.79
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 90.78
KOG2695425 consensus WD40 repeat protein [General function pr 90.32
KOG2314698 consensus Translation initiation factor 3, subunit 90.3
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 90.05
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 90.01
PF00930353 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin 89.6
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 89.3
PRK02888635 nitrous-oxide reductase; Validated 89.28
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 88.96
KOG2395644 consensus Protein involved in vacuole import and d 88.55
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 88.49
KOG2041 1189 consensus WD40 repeat protein [General function pr 88.38
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 88.11
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 87.71
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 87.08
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 87.04
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 86.81
COG0823425 TolB Periplasmic component of the Tol biopolymer t 86.03
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 85.79
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 84.72
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 84.18
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 83.38
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 83.21
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 82.44
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 81.68
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 80.89
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 80.34
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 80.33
>KOG2109 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-60  Score=540.66  Aligned_cols=629  Identities=31%  Similarity=0.366  Sum_probs=473.5

Q ss_pred             CCchhhHhhcceeeeccCCcceehhhhhhcccccccccCCCCCCCCcEEEEEEeeccCCCCCCCeEEEEEecCcEEEEEc
Q 001814           12 LPNSLKIISSCLKTVSTNASTVASTVRSAGASVAASISNASEDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDV   91 (1010)
Q Consensus        12 ~~~s~~~~s~~~~~~s~~a~~~~~~~rs~~~s~a~~i~~~~~~~kd~V~wa~Fd~le~~~~~~~~vLalGy~~G~qVWDv   91 (1010)
                      +|+|||+||.|+|+.|+|+.+++       +|++++.+.+.+.++|||+|++||+   .++..++||+++|.+|||+||.
T Consensus         1 ~p~s~~~vs~c~k~~ssg~~~~~-------~s~~~~~ss~~~e~~dqvlw~~fD~---~~~~~~~Vlll~~~~gfqv~d~   70 (788)
T KOG2109|consen    1 MPPSANSVSGCKKKNSSGHQRPQ-------QSHQQTQSSPLPEEEDQVLWIKFDP---KPEVLEEVLLLNREEGFQVVDE   70 (788)
T ss_pred             CCcccchhccchhhcccccccHH-------HHHHhhcCCCChhhhccccccccCC---chhHHHHHHHHhhccCceEEee
Confidence            59999999999999997776665       4566777777899999999999995   2344688999999999999999


Q ss_pred             cCCCcceEeeeeccCCEEEEEEecCCCCCCCCCCccccCcEEEEEecCCCCCCCCCCCCCCccccccCC-cCCCCCCCCC
Q 001814           92 EDASNFNELVSKRDGPVSFLQMQPFPVKDDGCEGFRKLHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGM-MDSQSGNCVN  170 (1010)
Q Consensus        92 ~~~g~v~ellS~hdGpV~~v~~lP~p~~s~~~D~F~~srpLLAvVsgd~~~~s~~~q~~~~~~~vr~gs-~d~~~~~~~~  170 (1010)
                      ++...+++..+.|++++.|++|++.|..+...++|++++|++|+|...   .+.+     .+..-++|. .+.       
T Consensus        71 ~Dsp~vh~~vs~~dd~~~f~sm~~~pl~sg~~~gf~ss~avpavv~~t---~S~p-----~I~~S~~Gse~d~-------  135 (788)
T KOG2109|consen   71 TDSPTVHKEVSISDDLLDFSSMDKSPLSSGPDSGFESSDAVPAVVRTT---TSPP-----TIPPSQTGSEQDS-------  135 (788)
T ss_pred             ccCCccceeeeecCCcceecccCCCCccCCCCCccccCCceeeecccc---cCCC-----cCCCCCCcceecc-------
Confidence            999999999999999999999999999988888999999999987522   1110     111224444 221       


Q ss_pred             CCCEEEEEeCCCCeEEEEEeCCCcEEEEEEcCCeEEEEeCCeEEEEECCCCceeEEEeecCCccccCCCccccccCccce
Q 001814          171 SPTAVRFYSFQSHCYEHVLRFRSSVCMVRCSPRIVAVGLATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPM  250 (1010)
Q Consensus       171 sp~tVrIWDlktge~V~tL~f~S~V~sVa~S~rlLAV~ld~~I~IwD~~Tle~l~tL~t~p~p~~~~~g~~~vnv~~gpl  250 (1010)
                      .+....++|+++..++|.++|+                   +|+|||+.+++..+.+..++.|.+      ..+++|+|+
T Consensus       136 t~an~~v~dl~S~~yah~l~fR-------------------qi~CfDa~tle~d~~~~~n~~p~l------~l~VGYGpl  190 (788)
T KOG2109|consen  136 TQANEMVVDLMSLDYAHALPFR-------------------QIHCFDAPTLEIDSMNTINTKPRL------LLSVGYGPL  190 (788)
T ss_pred             cccccceeccccccchhccccc-------------------ccccccCcccCCchhhcccccccc------ceeeccccc
Confidence            2456788999999999999997                   899999999998888888877632      245789999


Q ss_pred             EEccceEEEccCCeeeccCCccCCCcCCC-CCCCCCcCCCCCceEEEeehhhhhhhhcccc-------eeeccccccccC
Q 001814          251 AVGPRWLAYASNTLLLSNSGRLSPQNLTP-SGVSPSTSPGGSSLVARYAMEHSKQFAAGLS-------KTLSKYCQELLP  322 (1010)
Q Consensus       251 AlgpRwLAyas~~~~iwd~G~vs~Q~lt~-p~vS~stSP~~gslVa~~A~dssk~la~Gi~-------ktls~y~~~l~p  322 (1010)
                      ++++||+||+++...     .++.+.++. +.+++++|+.++..++++|++++|++|.|+.       +++++||+..++
T Consensus       191 aVg~rWaaya~~~a~-----~vss~~Vt~~~~VspttSs~~~~~va~~A~essk~lA~gl~nlgDkGy~~isglc~g~~~  265 (788)
T KOG2109|consen  191 AVGRRWAAYAQTLAN-----QVSSHLVTMGMSVSPTTSSQITAEVAEWAQESSKELAGGLVNLGDKGYVLISGLCRGSYQ  265 (788)
T ss_pred             cceeeeeeeccCcch-----hhhhccccccccccCCCCCchhHHHHHhhhhhhHHHhhhhcccccchHHHHHHHhhcccC
Confidence            999999999987432     112244555 7888999999899999999999999999965       688999999877


Q ss_pred             CCCCCCccCCCccccccccccccCC-CCe--EEEEECCCCcEEEEeccCCCCeEEEEECCCCCEEEEEEcCCCeEEEEeC
Q 001814          323 DGSSSPVSPNSVWKVGRHAGADMDN-AGI--VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRI  399 (1010)
Q Consensus       323 ~gs~s~~S~s~~~k~~~~~iasgs~-dG~--V~VwDl~s~~~v~~~~aHtspIsaLaFSPdGtlLATAS~dGt~IrVwdi  399 (1010)
                      .+......-....+.++....++.. -|+  +.+-|+.+...+.+|++|++||++|+|+++|.+|++++..|+.|++|++
T Consensus       266 ~g~gpglgg~~~~~vGrvg~vsaesV~g~~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi  345 (788)
T KOG2109|consen  266 IGTGPGLGGFEEVLVGRVGPVSAESVLGNNLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI  345 (788)
T ss_pred             CCCCCCCCCcCceeccccccccceeecccceEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence            6643332222222233322333333 455  9999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCccccCCcceEEEEEecccccccEEEEEEccCCCEEEEEeCCCeEEEEeCCCCCCccccccccCCCCCC
Q 001814          400 MPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVFVLSPFGGDSGFQTLSSQGGDP  479 (1010)
Q Consensus       400 ~p~~~~~~sG~~~~~~~~s~~~L~~L~RG~t~a~I~sIAFSpDg~~LAsgS~dGTVhIw~I~~~gg~~~~~~H~s~~~~~  479 (1010)
                      ++.....+.+..+..|.         .||++.+.|++|+|+-+.+|++++|.+|+-                       |
T Consensus       346 met~~t~~~~~qs~~~s---------~ra~t~aviqdicfs~~s~~r~~gsc~Ge~-----------------------P  393 (788)
T KOG2109|consen  346 METVCTVNVSDQSLVVS---------PRANTAAVIQDICFSEVSTIRTAGSCEGEP-----------------------P  393 (788)
T ss_pred             ccccccccccccccccc---------hhcchHHHHHHHhhhhhcceEeecccCCCC-----------------------c
Confidence            98543333332222221         489999999999999999999999966653                       3


Q ss_pred             ccCCCCCCCcccCCCCCccCccCCCCCceeeeeeeeeeecCCccccccccccccccCccccccceeeeecccCccccccc
Q 001814          480 YLFPVLSLPWWCTSSGISEQQCVLPPPPVTLSVVSRIKYSSFGWLNTVSNASASSMGKVFVPSGAVAAVFHNSIAHSSQH  559 (1010)
Q Consensus       480 ~~~pv~~lpw~~~ss~~~~q~~~p~p~~~~l~~vsrIk~~~~~w~~~v~~a~~~at~~~~~ps~~va~~F~~~~~~~~~~  559 (1010)
                      .+.+-..||||-.+++...-+..+.+.+..|...++++-.+.    |   ++++-.+++-.|...-..+|+.......  
T Consensus       394 ~ls~t~~lp~~A~~Sl~~gl~s~g~~aa~gla~~sag~~a~s----~---~asSv~s~s~~pd~ks~gv~~gsv~k~~--  464 (788)
T KOG2109|consen  394 ALSLTCQLPAYADTSLDLGLQSSGGLAAEGLATSSAGYTAHS----Y---TASSVFSRSVKPDSKSVGVGSGSVTKAN--  464 (788)
T ss_pred             ccccccccchhhchhhhccccccCcccceeeeeccccccccc----c---ccceeeccccccchhhccceeeeccccC--
Confidence            445556789999999887777777777888888777765332    1   2223334445566666777777654321  


Q ss_pred             cccccCccccEEEEcCCc-cEEEEecccCCCCCCCCC-CCccccccccccCCCc-eeEeecccccceecccCCCcccccc
Q 001814          560 VNSRTNSLEHLLVYTPSG-YVVQHELLPSIGMGPSDD-GSRIRAASLMCLQEDD-LQVRVEPVQWWDVCRRSDWPEREEF  636 (1010)
Q Consensus       560 ~~s~~~~~~~LlV~s~~G-~l~~Y~L~p~~g~e~~~~-~~~~~~~~~~~~~~~~-~~~~vep~~~W~v~r~~~~~e~~~~  636 (1010)
                       ...+..+..|||+.|.| +++||-|.+.+++.-.+. ....+-.+ +...+++ .++.|+|.+.|+.|++-+|+|++++
T Consensus       465 -q~~~~~l~~llv~~psGd~vvqh~vahs~~gv~~Ef~~~~~l~lS-ad~~e~ef~~f~V~Ph~~wsslaav~hly~l~r  542 (788)
T KOG2109|consen  465 -QGVITVLNLLLVGEPSGDGVVQHYVAHSDPGVYIEFSPDQRLVLS-ADANENEFNIFLVMPHATWSSLAAVQHLYKLNR  542 (788)
T ss_pred             -ccchhhhhheeeecCCCCceeEEEeeccCccceeeecccccceec-ccccccccceEEeecccccHHHhhhhhhhhccC
Confidence             13445678999999999 999999999988765443 22221211 3334567 9999999999999999999999997


Q ss_pred             ccccccCCCCceeeeeccCCcccCCCcccccCCcceeccccccccCCCccccceeEeeeeeEeeccCCccccccceeEEE
Q 001814          637 ISEATCDGHGAVEIFQNKSDCEDNYGIDFLDINDCIVEKSTFKNCSVKSYERSHWYLSNAEVQMSSGRLPIWQSSKISFF  716 (1010)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~yls~aEvq~~~~~~piW~~~~i~F~  716 (1010)
                        +.|..     +.+...... +.....       ++.     ....+.-+.+|-|+-+||+++|.. +|||+|.+ .||
T Consensus       543 --G~Tsa-----Kv~~~afs~-dsrw~A-------~~t-----~~~TthVfk~hpYgg~aeqrth~~-lp~vnk~s-rFh  600 (788)
T KOG2109|consen  543 --GSTSA-----KVVSTAFSE-DSRWLA-------ITT-----NHATTHVFKVHPYGGKAEQRTHGD-LPFVNKES-RFH  600 (788)
T ss_pred             --CCccc-----eeeeeEeec-chhhhh-------hhh-----cCCceeeeeeccccccccceecCC-chhccchh-hhc
Confidence              44333     222111111 110000       100     113456778999999999999999 99999999 999


Q ss_pred             EcCCccc------ccCCCcceEEeeeeceeEEEeccccccccccccccccccccc
Q 001814          717 KMDSPRA------NTHASGEFEIEKVSVHEVEIKRKELLPVFDHFQCIKPSWNNR  765 (1010)
Q Consensus       717 ~m~~~~~------~~~~~~e~eie~~~~~~~~~r~k~l~p~~~~~~~~~~~~~~~  765 (1010)
                      -|..+..      +...++|.||+++.++++|+|+||||||++     +...+.|
T Consensus       601 rsagl~~d~~~~~s~ggg~e~ei~~~~~~t~e~r~~dllPvy~-----~tS~rsr  650 (788)
T KOG2109|consen  601 RSAGLTDDADVTASIGGGKEREIADSCSYTKEHRIADLLPVYA-----KTSGRSR  650 (788)
T ss_pred             cccCCCccccccccCCCCccceecccccccccccccccCCccc-----ccCcccc
Confidence            9998654      233467999999999999999999999999     5555556

>PF12490 BCAS3: Breast carcinoma amplified sequence 3 ; InterPro: IPR022175 This domain family is found in eukaryotes, and is typically between 229 and 245 amino acids in length Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2109 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4415 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG4714 consensus Nucleoporin [Nuclear structure] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG2695 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1010
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 3e-06
d1tbga_340 b.69.4.1 (A:) beta1-subunit of the signal-transduc 0.001
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 4e-05
d1erja_388 b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea 7e-05
d1nr0a1311 b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne 2e-04
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 3e-04
d1vyhc1317 b.69.4.1 (C:92-408) Platelet-activating factor ace 4e-04
d1k8kc_371 b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 0.002
d1yfqa_342 b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake 0.003
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.2 bits (113), Expect = 3e-06
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 18/108 (16%)

Query: 351 VVVKDFVTRAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGN 410
             + D         F  H S I+A+CF P+G    T                   S    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG------------------SDDAT 249

Query: 411 HKYDWNSSHVHLYKLHRGITSATIQDICFSHYSQWIAIVSSKGTCHVF 458
            +     +   L           I  + FS   + +        C+V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1010
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.97
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.97
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.97
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.96
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.96
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.95
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.95
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.95
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.95
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.94
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.94
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.93
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.92
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.91
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.91
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.9
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.9
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.9
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.9
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.9
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.89
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.88
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.87
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.86
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.85
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.83
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.83
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.82
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.81
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.79
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.78
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.78
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.76
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.69
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.68
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.67
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.63
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.59
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 99.54
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.52
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.49
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 99.36
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 99.27
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 99.21
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 99.14
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 99.11
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 99.04
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 99.0
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.97
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 98.94
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 98.75
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.51
d1qnia2441 Nitrous oxide reductase, N-terminal domain {Pseudo 98.33
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.69
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 97.2
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 97.16
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.06
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 96.79
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 96.7
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 96.25
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 95.08
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 95.01
d1utca2327 Clathrin heavy-chain terminal domain {Rat (Rattus 94.79
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 92.53
d1flga_582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 89.43
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 88.12
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 87.88
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 85.6
d1kv9a2560 Quinoprotein alcohol dehydrogenase, N-terminal dom 80.48
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-28  Score=181.01  Aligned_cols=274  Identities=13%  Similarity=0.071  Sum_probs=181.5

Q ss_pred             CCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCCEEE----EEECCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf             799886899997322579988881999990483899974588960476----1110677899999158987878888555
Q 001814           53 EDLKDQVTWAGFDRLEYGPSVFKQVLLLGYQNGFQVLDVEDASNFNEL----VSKRDGPVSFLQMQPFPVKDDGCEGFRK  128 (1010)
Q Consensus        53 ~~~kd~V~wa~Fd~le~~~~~~~~vLllGy~~GiqVWDl~~~g~v~el----lS~hdGpV~~l~ilP~P~~s~~~D~F~~  128 (1010)
                      -+|.+.|..+.|..       +++.|++|.++.++|||++.......+    ...|+++|..+++.|++           
T Consensus        48 ~~H~~~V~~v~fs~-------~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg-----------  109 (337)
T d1gxra_          48 LNHGEVVCAVTISN-------PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-----------  109 (337)
T ss_dssp             ECCSSCCCEEEECS-------SSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-----------
T ss_pred             CCCCCCEEEEEECC-------CCCEEEEEECCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCC-----------
T ss_conf             79999289999989-------999999997998899773677633116876404889968999986799-----------


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC--EEEEEEECC-CCEEEEEECC--C
Q ss_conf             6768999966788878999887776654458767789987788987999868999--099999279-9689999758--7
Q 001814          129 LHPFLLVVAGEDTNTLAPGQNRSHLGGVRDGMMDSQSGNCVNSPTAVRFYSFQSH--CYEHVLRFR-SSVCMVRCSP--R  203 (1010)
Q Consensus       129 srpLLAvV~gd~~~~s~~~q~~~~~~~vr~G~~d~~~~~~~~sp~tVrIWDlksg--e~V~tLkf~-S~V~sI~~s~--~  203 (1010)
                        .+|++.+.                                 +++|++||+...  +....+..+ ..|..+.+++  .
T Consensus       110 --~~l~s~~~---------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  154 (337)
T d1gxra_         110 --CTLIVGGE---------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK  154 (337)
T ss_dssp             --SEEEEEES---------------------------------SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred             --CEEEEEEC---------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             --88988612---------------------------------3321111111111111111111111111111111111


Q ss_pred             EEEEEE-CCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC--CEEEECCC--CEEECCCCCCCCCCCC
Q ss_conf             599994-992999978999524899305995456787534334754069831--36997069--7043168865777678
Q 001814          204 IVAVGL-ATQIYCFDALTLENKFSVLTYPVPQLAGQGAVGINVGYGPMAVGP--RWLAYASN--TLLLSNSGRLSPQNLT  278 (1010)
Q Consensus       204 iLAVsl-~~~I~IfDl~Tle~l~tL~t~psp~~~~~~~~~inv~~gpiAlgp--RwLAYas~--~~~iwd~G~vs~q~lt  278 (1010)
                      +++++. +..|++||+.+.+.......+..+             ...+++++  ..+++++.  .+.+|+...       
T Consensus       155 ~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-------------v~~l~~s~~~~~~~~~~~d~~v~i~d~~~-------  214 (337)
T d1gxra_         155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-------------ASCIDISNDGTKLWTGGLDNTVRSWDLRE-------  214 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSC-------------EEEEEECTTSSEEEEEETTSEEEEEETTT-------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------
T ss_conf             1111111111111111111111111111111-------------11012344432112235665532111111-------


Q ss_pred             CCCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             88888985899993078740112265521442000122123258998888658975544643420247997199998898
Q 001814          279 PSGVSPSTSPGGSSLVARYAMEHSKQFAAGLSKTLSKYCQELLPDGSSSPVSPNSVWKVGRHAGADMDNAGIVVVKDFVT  358 (1010)
Q Consensus       279 ~pv~S~stSps~gslVa~~A~dssk~la~Gi~KtLs~y~~~l~p~gs~s~~s~s~~~k~~~~~~~sgs~dG~V~VwDl~s  358 (1010)
                                  +..+.                .+. +     + +....+.+++..+    .++.+..+|.+.+||+..
T Consensus       215 ------------~~~~~----------------~~~-~-----~-~~i~~l~~~~~~~----~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         215 ------------GRQLQ----------------QHD-F-----T-SQIFSLGYCPTGE----WLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             ------------TEEEE----------------EEE-C-----S-SCEEEEEECTTSS----EEEEEETTSCEEEEETTS
T ss_pred             ------------CEEEC----------------CCC-C-----C-CCEEEEEECCCCC----CCCEECCCCCCCCCCCCC
T ss_conf             ------------00000----------------246-6-----6-6157999715303----000000256421111111


Q ss_pred             CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf             92888801388885999998999999999759996999957888655899988544688610899995265455199999
Q 001814          359 RAIISQFKAHTSPISALCFDPSGTLLVTASVYGNNINIFRIMPSCMRSGSGNHKYDWNSSHVHLYKLHRGITSATIQDIC  438 (1010)
Q Consensus       359 ~~~i~~l~aHtspIsaLaFSPdGtlLATAS~dGt~IrVfdI~p~~~~~~sG~~~~~~~ss~~~Ly~L~RG~t~a~I~sIa  438 (1010)
                      .... ....|..+|.+++|+|+|++|++++.+|. |++|++..       +          ..+..+.   +...|.+++
T Consensus       256 ~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~-------~----------~~~~~~~---~~~~v~~~~  313 (337)
T d1gxra_         256 PDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPY-------G----------ASIFQSK---ESSSVLSCD  313 (337)
T ss_dssp             SCEE-EECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTT-------C----------CEEEEEE---CSSCEEEEE
T ss_pred             CCCC-CCCCCCCCCCEEEECCCCCEEEEEECCCE-EEEEECCC-------C----------CEEEECC---CCCCEEEEE
T ss_conf             1100-00124565416999899999999948996-99998999-------9----------7999926---999879999


Q ss_pred             ECCCCCEEEEEECCCEEEEEEC
Q ss_conf             9469999999948990999957
Q 001814          439 FSHYSQWIAIVSSKGTCHVFVL  460 (1010)
Q Consensus       439 FSpDs~~LAssS~dGTVhIw~I  460 (1010)
                      |+||+++|++++.||+|+||+|
T Consensus       314 ~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         314 ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECTTSCEEEEEETTSCEEEEEE
T ss_pred             EECCCCEEEEEECCCEEEEEEE
T ss_conf             9279999999908996999977
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure