Citrus Sinensis ID: 001848

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-----
MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQSSSTSLTSSEDNQNGSHLSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYPEDDEEVELGSSSSYTSEDEETDSATGLDSPGTKVWDGKSNRNLSVSQIHHPLENPSRRQVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERTSFLSGDGQDILNSQKGRRKVDESSDESESEILGRSQSGAAASSSASFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
ccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccHHHHccccccccccHHHHHccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEcccccEEEEEEEEEEEccccEEEEEcccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccEEEEEc
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHHHHHHHHHHHHHHHHHHHcccHccccccccccccHccHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccHHHHccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHcHHHHHHHHHHcccccHcccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHccccEcccccccccccccccccccccccccEEccccccccccEcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHccccccccccccccccHHHHHccccccccHHccccHccccccccccccccccccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEccccccEEEEEEcHHHHHHHHHHHHcccccccccccHHccccccHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHccccccccccccHHHHHHHcccccccHHHHHHHcccccHHccccccccHcccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHEEEc
mssqrqrqVNFRDLVEEGKKRIVILVICVAGLSYLMSLtsssvlvnMPAAASLIILLRYFSLDFEMRRKAAaynskpssenvvsqnkppecpkvverpnwrrnvnspvVEDAIDKFTRHLVSEWVTDLWYSrltrdkegpEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEkqhsepltierrDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLisftfrpqdlqCSFFRYIVRELLACAVmrpvlnlanprFINERIESLAVSMTKakgataaqetsqskpdgssnistdhfsrfldpsvtgVELVQlkndqssstsltssednqngshlskdpllsldtrstcswgllpmisqtsdekciqrhhsggewpekLDLISRRktralapehfdnmwtkgrnykrkegenwVNEQHSVLKSatadgskamekpkekntmtnvkpsmtrttsdrysdklkidnsfphadwkksnglvvasypeddeevelgssssytsedeetdsatgldspgtkvwdgksnrnlsvsqihhplenpsrrqVQYQRLSrtqsgrkrsrlssqklpiwqevertsflsgdgqdilnsqkgrrkvdessdeseseilgrsqsgaaasssasfitlpenhsstvnpvqnslmVDSFFKLRCEVLGanivksdsrTFAVYAIAVtdsnnnswsIKRRFRHFEELHRRLKFFQeynlhlppkhflstgldVSVIQERCKLLDRYLKMLLQlptvsgsiEVWDFLsvdsqtyafsnpfSIVETLsvdledkpserstkFTNSIGNQIIsssyrsehlgseskesagQAKHNFVAegqkfnvkemsrspvqntskeHEKSLedsrsgldtsvqksspslrnlgkpmkgrksdgleetseslldastdptlptewvppnlsvpilDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
mssqrqrqvnfrdlveegkkrIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAynskpssenvvsqnkppecpkvverpnwrrnvnspVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQakiekqhsepltierrdIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGataaqetsqskpdgssnISTDHFSRFLDPSVTGVELVQLKNDQSsstsltssednqngshlskdpllslDTRSTCSWGLLPMISQTSDEKCIQRHhsggewpekldLISRRKTralapehfdnmwtkgrnYKRKEGENWVNEqhsvlksatadgskamekpkekntmtnvkpsmtrttsdrysDKLKIdnsfphadwkksnGLVVASYPEDDEEVELGssssytsedeetdsatgldspgtkvWDGKSNRNLSVSqihhplenpsrrqvqYQRLsrtqsgrkrsrlssqklpiwqevertsflsgdgqdilnsqkgrrkvdessdeseseilgrsqsgaaASSSASFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGAnivksdsrTFAVYAIavtdsnnnswsiKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLsvdledkpserstkftnsignqiISSSYRSEHLGSESKESAGQAKHNFVAEgqkfnvkemsrspvqntskeheksledsrsgldtsvqksspslrnlgkpmkgrkSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLltnfipvvllli
MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQssstsltssEDNQNGSHLSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYPEDDEEVELGssssytsedeetdsATGLDSPGTKVWDGKSNRNLSVSQIHHPLENPSRRQVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERTSFLSGDGQDILNSQKGRRKVdessdeseseILGRsqsgaaasssasFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKrrfrhfeelhrrlKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
**********FRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMR********************************WRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLA*******************************************************************************RSTCSWGLLPMIS******CI************LDLI***********HFDNMWT*******************************************************************************************************************************************************************************************************************************************QNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSV****************************************************************************************************************************TEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLL*
*************LVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDF******************************************PVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT*******************EIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAV************************************************************************************************************************************TK************************************************************************************************************************************************************************************************************************************************DSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQE**LHL*************VIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVD****************************************************************************************************************************************************NLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
*********NFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAA******************ECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVS***********************ISTDHFSRFLDPSVTGVELVQLK********************LSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYP****************************SPGTKVWDGKSNRNLSVSQIHHPLEN*************************QKLPIWQEVERTSFLSGDGQDILN*********************************SFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSY***************AKHNFVAEGQKFNVK**********************************SLRNLG***********************DPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
*********NFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKA*******************ECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAK******************************SVTGVELVQLKND*******************************************************GGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRK*G*N*V*****************************************************************************************************K*W***SNRNLS**************************************PI*****RTSFL************************************************************SLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSI*****************************************************************************************************TDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
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MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFEMRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQSSSTSLTSSEDNQNGSHLSKDPLLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYKRKEGENWVNEQHSVLKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKIDNSFPHADWKKSNGLVVASYPEDDEEVELGSSSSYTSEDEETDSATGLDSPGTKVWDGKSNRNLSVSQIHHPLENPSRRQVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERTSFLSGDGQDILNSQKGRRKVDESSDESESEILGRSQSGAAASSSASFITLPENHSSTVNPVQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAKHNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRKSDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQVLQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVIILLLTNFIPVVLLLI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1005 2.2.26 [Sep-21-2011]
Q6PHS6957 Sorting nexin-13 OS=Mus m yes no 0.179 0.188 0.252 5e-07
Q8C080344 Sorting nexin-16 OS=Mus m no no 0.107 0.313 0.281 4e-06
Q9Y5W8968 Sorting nexin-13 OS=Homo yes no 0.179 0.185 0.241 4e-06
P57769344 Sorting nexin-16 OS=Rattu no no 0.107 0.313 0.281 4e-06
P57768344 Sorting nexin-16 OS=Homo no no 0.107 0.313 0.272 5e-06
Q5R6Q7344 Sorting nexin-16 OS=Pongo yes no 0.107 0.313 0.272 5e-06
Q9USN11010 Sorting nexin-12 OS=Schiz yes no 0.084 0.084 0.364 6e-05
Q4G017 1502 Nischarin OS=Rattus norve no no 0.084 0.056 0.354 0.0008
>sp|Q6PHS6|SNX13_MOUSE Sorting nexin-13 OS=Mus musculus GN=Snx13 PE=2 SV=1 Back     alignment and function desciption
 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 6/186 (3%)

Query: 101 RRNVNSPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRN 160
           RR   + ++++ + +  +  + ++V   WY  L+ D+    E+ Q +   L +F+ R + 
Sbjct: 92  RRLTGANIIDEPLQQVIQFSLRDYVQ-YWYYTLSDDESFLLEIRQTLQNALIQFATRSKE 150

Query: 161 INLIDLLTRDFVNLICTHLELFRATQAKI-EKQHSEPLTIE---RRDIEIRCVLAAENKL 216
           I+     T   V+   THL +FR  Q ++ EK      T E       E+   +  +   
Sbjct: 151 IDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVCR 210

Query: 217 HPALFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACAVMRPVLN-LANPR 275
                S + E   L+ L + L+     P D Q    RY VRE+LA  ++ P++N L++P 
Sbjct: 211 DLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVREILARGILLPLINQLSDPD 270

Query: 276 FINERI 281
           +IN+ +
Sbjct: 271 YINQYV 276
May be involved in several stages of intracellular trafficking. Acts as a GAP for Galphas (By similarity). May play a role in endosome homeostasis.
Mus musculus (taxid: 10090)
>sp|Q8C080|SNX16_MOUSE Sorting nexin-16 OS=Mus musculus GN=Snx16 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y5W8|SNX13_HUMAN Sorting nexin-13 OS=Homo sapiens GN=SNX13 PE=1 SV=4 Back     alignment and function description
>sp|P57769|SNX16_RAT Sorting nexin-16 OS=Rattus norvegicus GN=Snx16 PE=1 SV=2 Back     alignment and function description
>sp|P57768|SNX16_HUMAN Sorting nexin-16 OS=Homo sapiens GN=SNX16 PE=1 SV=2 Back     alignment and function description
>sp|Q5R6Q7|SNX16_PONAB Sorting nexin-16 OS=Pongo abelii GN=SNX16 PE=2 SV=1 Back     alignment and function description
>sp|Q9USN1|SNX12_SCHPO Sorting nexin-12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snx12 PE=3 SV=1 Back     alignment and function description
>sp|Q4G017|NISCH_RAT Nischarin OS=Rattus norvegicus GN=Nisch PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1005
2555499961083 conserved hypothetical protein [Ricinus 0.915 0.849 0.646 0.0
3594825961069 PREDICTED: uncharacterized protein LOC10 0.921 0.866 0.647 0.0
2977432691087 unnamed protein product [Vitis vinifera] 0.910 0.841 0.648 0.0
356522166 1136 PREDICTED: uncharacterized protein LOC10 0.966 0.854 0.623 0.0
357468395 1225 hypothetical protein MTR_4g012920 [Medic 0.958 0.786 0.587 0.0
356528930 1111 PREDICTED: uncharacterized protein LOC10 0.942 0.852 0.602 0.0
4494481781093 PREDICTED: uncharacterized protein LOC10 0.935 0.860 0.557 0.0
297844428949 predicted protein [Arabidopsis lyrata su 0.884 0.936 0.543 0.0
2384784941020 phox (PX) domain-containing protein [Ara 0.889 0.876 0.537 0.0
3341825961012 phox (PX) domain-containing protein [Ara 0.889 0.883 0.537 0.0
>gi|255549996|ref|XP_002516049.1| conserved hypothetical protein [Ricinus communis] gi|223544954|gb|EEF46469.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1250 bits (3235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 645/997 (64%), Positives = 743/997 (74%), Gaps = 77/997 (7%)

Query: 6   QRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYFSLDFE 65
           QRQV  RDLVEE KKRIV+L+ICV GLSYLMSLTSSSV VN+PAAASLI+LLRYFSLD+E
Sbjct: 4   QRQVTVRDLVEEAKKRIVVLIICVIGLSYLMSLTSSSVWVNLPAAASLILLLRYFSLDYE 63

Query: 66  MRRKAAAYNSKPSSENVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRHLVSEWV 125
           MRRKAA YNSKPSS N VSQN  PE  +  E+ +WR+ VNSPVVEDAID F RHL+SEWV
Sbjct: 64  MRRKAATYNSKPSSANPVSQNNNPEHTRAREKSDWRKKVNSPVVEDAIDHFARHLISEWV 123

Query: 126 TDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT 185
           TDLWYSRLT D+EGPEEL+QI+NGV GEFS R+RNINLIDLLTRD ++LICTHLELFR++
Sbjct: 124 TDLWYSRLTPDREGPEELIQIVNGVFGEFSSRMRNINLIDLLTRDLIHLICTHLELFRSS 183

Query: 186 QAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLISFTFRPQ 245
           QAKIE   S  L+ E+RD E+R VLAAEN+LHPALF AEAEHKVLQ +MD LISFTF+P+
Sbjct: 184 QAKIETHPSALLSFEQRDKELRLVLAAENRLHPALFCAEAEHKVLQHVMDGLISFTFKPE 243

Query: 246 DLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAKGATAAQETSQSKP 305
           DLQCSFFR+IVRELLACAVMRPVLNLA+PRFINERIE L +S    KG  AAQE SQSK 
Sbjct: 244 DLQCSFFRFIVRELLACAVMRPVLNLASPRFINERIEILVLSKAN-KGVPAAQEASQSKS 302

Query: 306 DGSSNISTDHFSRFLDPSVTGVELVQLKNDQSSSTSLTSSEDNQNGSHLSKDPLLSLDTR 365
           +GSS IS+D FSR LDP+  GVELVQLK  QS   S++   DN NG+H SKDPLLS+DTR
Sbjct: 303 NGSSKISSDQFSRILDPTAVGVELVQLKTIQSKRGSVSPETDNVNGTHGSKDPLLSIDTR 362

Query: 366 STCSWGLLPMISQTSDEKCIQRHHSGGEWPEKLDLISRRKTRALAPEHFDNMWTKGRNYK 425
           S+ SW  LP+   ++D   IQR+ SGGEW + LD++S+RKT ALAPE+F+NMW KGRNY+
Sbjct: 363 SSRSWSSLPLNPPSTDTGGIQRYASGGEWGDMLDMLSQRKTAALAPENFENMWAKGRNYR 422

Query: 426 RKEGENWVNEQHSV----LKSATADGSKAMEKPKEKNTMTNVKPSMTRTTSDRYSDKLKI 481
            K+ +N   E  S      K  TAD SK M K KEK+ +     S+++            
Sbjct: 423 NKDSQNRSTEHFSQNLSGNKIVTADQSK-MAKAKEKHALNASDASLSQ------------ 469

Query: 482 DNSFPHADWKKSNGLVVASYPEDDEEVELGSSSSYTSEDEETDSATGLDSPGTKVWDGKS 541
            N   H D                 E E GS S YTSE+E+    TGLD PGTKVWD K+
Sbjct: 470 -NGLMHVD-----------------ESESGSGSLYTSEEEDPSRVTGLDDPGTKVWDRKT 511

Query: 542 NRNLSVSQIHHPLENPSRR--------QVQYQRLSRTQSGRKRSRLSSQKLPIWQEVERT 593
           NRNL+VS IHHPLENP R         Q  Y+++ R QSGRK                  
Sbjct: 512 NRNLAVSPIHHPLENPQRHGTKKTERGQAHYEKIPRPQSGRK------------------ 553

Query: 594 SFLSGDGQDILNSQKGRRKVDESSDESESEILGRSQSGAAASSSASFITLPENHSSTVNP 653
                       S KG  K D+SSD+SE E LGR  SGA A SSA  ++LPEN SST+N 
Sbjct: 554 ------------SSKGHAKADDSSDDSEVEGLGRVYSGATACSSALSVSLPENDSSTLNS 601

Query: 654 VQNSLMVDSFFKLRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRR 713
           V++SLM DSFFKLRCEVLGANIVKS SR FAVY+I+VTD NNNSWSIKRRFRHFEELHRR
Sbjct: 602 VKSSLMADSFFKLRCEVLGANIVKSASRMFAVYSISVTDVNNNSWSIKRRFRHFEELHRR 661

Query: 714 LKFFQEYNLHLPPKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773
           LK + EYNLHLPPKHFLSTGLD+ +IQERCKLLDRYLK LLQLPT+SGSIEVWDFLSVDS
Sbjct: 662 LKEYSEYNLHLPPKHFLSTGLDMPIIQERCKLLDRYLKKLLQLPTISGSIEVWDFLSVDS 721

Query: 774 QTYAFSNPFSIVETLSVDLEDKPSERSTKFTNSIGNQIISSSYRSEHLGSESKESAGQAK 833
           QTY FSN FSI+ETLSVDL+DKP ERSTK +N +G  + S S   E LG+E KESA Q K
Sbjct: 722 QTYIFSNSFSIIETLSVDLDDKPPERSTKGSNFVG-PVNSLSTNREQLGTECKESASQTK 780

Query: 834 HNFVAEGQKFNVKEMSRSPVQNTSKEHEKSLEDSRSGLDTSVQKSSPSLRNLGKPMKGRK 893
           HNFVA+G K + K +S SPV+   KE  K  EDS S  D   +K++ S+RNLGK +KGR+
Sbjct: 781 HNFVADGVKMSPKHISCSPVKKLGKESGKPFEDSVSNSD--AKKNASSVRNLGKTVKGRQ 838

Query: 894 SDGLEETSESLLDASTDPTLPTEWVPPNLSVPILDLVDVIFQLQDGGWIRRKAFWVAKQV 953
            DG E   ES+ DAS DPTLPTEWVPPNL+ PILDLVDVIFQLQDGGWIRR+AFWVAKQ+
Sbjct: 839 IDGSESKPESIRDASPDPTLPTEWVPPNLAAPILDLVDVIFQLQDGGWIRRQAFWVAKQI 898

Query: 954 LQLGMGDAFDDWLMEKIQLLRRGSVVASGIKRLEQVI 990
           LQLGMGDA DDWL+EKIQLLR GSVVASGIKR+EQ++
Sbjct: 899 LQLGMGDALDDWLIEKIQLLRTGSVVASGIKRVEQIL 935

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482596|ref|XP_002279481.2| PREDICTED: uncharacterized protein LOC100243006 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297743269|emb|CBI36136.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356522166|ref|XP_003529719.1| PREDICTED: uncharacterized protein LOC100778731 [Glycine max] Back     alignment and taxonomy information
>gi|357468395|ref|XP_003604482.1| hypothetical protein MTR_4g012920 [Medicago truncatula] gi|355505537|gb|AES86679.1| hypothetical protein MTR_4g012920 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356528930|ref|XP_003533050.1| PREDICTED: uncharacterized protein LOC100790491 [Glycine max] Back     alignment and taxonomy information
>gi|449448178|ref|XP_004141843.1| PREDICTED: uncharacterized protein LOC101219007 [Cucumis sativus] gi|449491852|ref|XP_004159021.1| PREDICTED: uncharacterized LOC101219007 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844428|ref|XP_002890095.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335937|gb|EFH66354.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|238478494|ref|NP_001154343.1| phox (PX) domain-containing protein [Arabidopsis thaliana] gi|332191172|gb|AEE29293.1| phox (PX) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182596|ref|NP_001185002.1| phox (PX) domain-containing protein [Arabidopsis thaliana] gi|332191173|gb|AEE29294.1| phox (PX) domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1005
TAIR|locus:20377531020 AT1G15240 [Arabidopsis thalian 0.489 0.482 0.562 6.8e-207
UNIPROTKB|F1PSY8904 SNX13 "Uncharacterized protein 0.179 0.199 0.279 1.7e-12
UNIPROTKB|B8ZZT9888 SNX13 "Sorting nexin-13" [Homo 0.179 0.202 0.274 2.5e-12
MGI|MGI:2661416957 Snx13 "sorting nexin 13" [Mus 0.179 0.188 0.252 3.1e-12
UNIPROTKB|Q9Y5W8968 SNX13 "Sorting nexin-13" [Homo 0.179 0.185 0.274 3.9e-12
RGD|1309778958 Snx13 "sorting nexin 13" [Ratt 0.179 0.187 0.252 6.2e-12
UNIPROTKB|E1C7R8880 SNX13 "Uncharacterized protein 0.177 0.202 0.25 7.7e-12
UNIPROTKB|I3LUU8957 SNX13 "Uncharacterized protein 0.179 0.188 0.274 3.1e-11
UNIPROTKB|E1BZM0996 SNX13 "Uncharacterized protein 0.177 0.178 0.25 4.9e-11
WB|WBGene00013803940 snx-13 [Caenorhabditis elegans 0.175 0.187 0.260 9.3e-11
TAIR|locus:2037753 AT1G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1347 (479.2 bits), Expect = 6.8e-207, Sum P(3) = 6.8e-207
 Identities = 283/503 (56%), Positives = 355/503 (70%)

Query:     1 MSSQRQRQVNFRDLVEEGKKRIVILVICVAGLSYLMSLTSSSVLVNMPAAASLIILLRYF 60
             MS+Q+Q  V  RDLV+E KKRIVI+VICV GLSYLMSLTSSSVLVN+  A  LIIL RY+
Sbjct:     1 MSTQKQ-VVTIRDLVDEAKKRIVIVVICVVGLSYLMSLTSSSVLVNLTPAVLLIILFRYY 59

Query:    61 SLDFEMRRKAAAYNSKPSSE-NVVSQNKPPECPKVVERPNWRRNVNSPVVEDAIDKFTRH 119
             +LD EM+RKAAAY +KPSS  N  + NK PE PK   R +WR  VNS VVEDAID FTRH
Sbjct:    60 TLDSEMKRKAAAYTNKPSSSLNAPTLNKTPELPKAAPRSDWRSKVNSQVVEDAIDHFTRH 119

Query:   120 LVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHL 179
             L+SEWV DLWYSR+T DK+GPEELV IIN VLGE S R RN+NLIDLLTRD +++IC  +
Sbjct:   120 LISEWVLDLWYSRITPDKQGPEELVFIINDVLGELSRRFRNVNLIDLLTRDLIDIICRRV 179

Query:   180 ELFRATQAKIEKQHSEPLTIERRDIEIRCVLAAENKLHPALFSAEAEHKVLQCLMDSLIS 239
             ELFR  QAKIE+Q    L+ E RD E+R V+A+E+KLHPALFS E+EHKVLQ +++SLI 
Sbjct:   180 ELFRECQAKIERQQRRSLSFEDRDSELRRVMASEDKLHPALFSPESEHKVLQHIVNSLIL 239

Query:   240 FTFRPQDLQCSFFRYIVRELLACAVMRPVLNLANPRFINERIESLAVSMTKAK-GATAAQ 298
              TFRP+DL C+FF Y VREL AC V+RPVLNLANPRFINERIE+  +S  K    ++AA+
Sbjct:   240 VTFRPEDLHCAFFHYTVRELFACCVIRPVLNLANPRFINERIEAAVMSRIKTTIRSSAAE 299

Query:   299 ETSQSKPDGSSNISTDHFSRFLDPSVTGVELVQLKNDQXXXXXXXXXEDNQNGSHLSKDP 358
             E SQS  +  SN+S DHFSR++DPSVTGVELVQLKN+Q          D Q+   LSKDP
Sbjct:   300 EASQS--EDLSNVSPDHFSRYMDPSVTGVELVQLKNEQQKNSKKKSATDKQHVKELSKDP 357

Query:   359 LLSLDTRSTCSWGLLPMISQTSDEKCIQRHHSGGE-WPEKLDLISRRKTRALAPEHFDNM 417
             LLS+DTRS+ SW   P  S+  D     + H GGE W + LD++S+RKT  LAPEH +++
Sbjct:   358 LLSMDTRSSRSWNSFPSTSKIGDGSKDPQGHRGGEGWGDVLDMMSQRKTETLAPEHLESV 417

Query:   418 WTKGRNYKRKEGENWVNEQHSVLKSATA-DGSKAMEKPKEKNT--MTNVKPSMTRTTS-D 473
             W KGRNYK+KEG   V+E+     S+ A D ++     +E +   + N    ++  +S +
Sbjct:   418 WAKGRNYKKKEGGK-VDERVPPRWSSKAGDCNENTVNARESSQRKVVNTDSHLSSYSSAE 476

Query:   474 RYSDKLKIDNSFPHADWKKSNGL 496
                ++ K  +S+   D +   GL
Sbjct:   477 EDEEQTKSSHSYTSEDEETVTGL 499
GO:0005634 "nucleus" evidence=ISM
GO:0007154 "cell communication" evidence=IEA
GO:0035091 "phosphatidylinositol binding" evidence=IEA;ISS
GO:0035556 "intracellular signal transduction" evidence=ISS
GO:0007165 "signal transduction" evidence=ISS
UNIPROTKB|F1PSY8 SNX13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B8ZZT9 SNX13 "Sorting nexin-13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2661416 Snx13 "sorting nexin 13" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5W8 SNX13 "Sorting nexin-13" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309778 Snx13 "sorting nexin 13" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7R8 SNX13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUU8 SNX13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZM0 SNX13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00013803 snx-13 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034391001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (1064 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1005
cd06872107 cd06872, PX_SNX19_like_plant, The phosphoinositide 4e-48
pfam02194182 pfam02194, PXA, PXA domain 6e-48
cd06093106 cd06093, PX_domain, The Phox Homology domain, a ph 5e-22
pfam00787109 pfam00787, PX, PX domain 2e-19
smart00313176 smart00313, PXA, Domain associated with PX domains 7e-15
smart00312105 smart00312, PX, PhoX homologous domain, present in 2e-12
cd06873120 cd06873, PX_SNX13, The phosphoinositide binding Ph 2e-10
cd07279112 cd07279, PX_SNX20_21_like, The phosphoinositide bi 5e-10
cd07276110 cd07276, PX_SNX16, The phosphoinositide binding Ph 2e-09
cd06876133 cd06876, PX_MDM1p, The phosphoinositide binding Ph 2e-08
cd06875116 cd06875, PX_IRAS, The phosphoinositide binding Pho 8e-08
cd06897108 cd06897, PX_SNARE, The phosphoinositide binding Ph 1e-06
cd06871120 cd06871, PX_MONaKA, The phosphoinositide binding P 2e-06
cd06870109 cd06870, PX_CISK, The phosphoinositide binding Pho 8e-06
cd06883109 cd06883, PX_PI3K_C2, The phosphoinositide binding 2e-05
cd07277118 cd07277, PX_RUN, The phosphoinositide binding Phox 4e-05
cd06893132 cd06893, PX_SNX19, The phosphoinositide binding Ph 8e-05
cd07300114 cd07300, PX_SNX20, The phosphoinositide binding Ph 9e-05
cd06867112 cd06867, PX_SNX41_42, The phosphoinositide binding 9e-05
cd06880110 cd06880, PX_SNX22, The phosphoinositide binding Ph 1e-04
cd06874127 cd06874, PX_KIF16B_SNX23, The phosphoinositide bin 1e-04
cd06882123 cd06882, PX_p40phox, The phosphoinositide binding 2e-04
cd06885104 cd06885, PX_SNX17_31, The phosphoinositide binding 0.001
cd07301112 cd07301, PX_SNX21, The phosphoinositide binding Ph 0.002
>gnl|CDD|132782 cd06872, PX_SNX19_like_plant, The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins Back     alignment and domain information 
 Score =  166 bits (421), Expect = 4e-48
 Identities = 67/105 (63%), Positives = 82/105 (78%)

Query: 666 LRCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKFFQEYNLHLP 725
           L C VLGA IVKS S++FAVY++AVTD+ N +W +KRRFR+FE LHRRLK   +YNL LP
Sbjct: 1   LSCRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKEVPKYNLELP 60

Query: 726 PKHFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLS 770
           PK FLS+ LD + I+ERCKLLD+YLK LL +  V+ S EVW FLS
Sbjct: 61  PKRFLSSSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFLS 105

The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 107
>gnl|CDD|216925 pfam02194, PXA, PXA domain Back     alignment and domain information
>gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>gnl|CDD|216119 pfam00787, PX, PX domain Back     alignment and domain information
>gnl|CDD|214611 smart00313, PXA, Domain associated with PX domains Back     alignment and domain information
>gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>gnl|CDD|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 Back     alignment and domain information
>gnl|CDD|132812 cd07279, PX_SNX20_21_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 Back     alignment and domain information
>gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 Back     alignment and domain information
>gnl|CDD|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p Back     alignment and domain information
>gnl|CDD|132785 cd06875, PX_IRAS, The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected Back     alignment and domain information
>gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi Back     alignment and domain information
>gnl|CDD|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase Back     alignment and domain information
>gnl|CDD|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase Back     alignment and domain information
>gnl|CDD|132793 cd06883, PX_PI3K_C2, The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>gnl|CDD|132810 cd07277, PX_RUN, The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains Back     alignment and domain information
>gnl|CDD|132803 cd06893, PX_SNX19, The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 Back     alignment and domain information
>gnl|CDD|132833 cd07300, PX_SNX20, The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 Back     alignment and domain information
>gnl|CDD|132777 cd06867, PX_SNX41_42, The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 Back     alignment and domain information
>gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 Back     alignment and domain information
>gnl|CDD|132784 cd06874, PX_KIF16B_SNX23, The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 Back     alignment and domain information
>gnl|CDD|132792 cd06882, PX_p40phox, The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase Back     alignment and domain information
>gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 Back     alignment and domain information
>gnl|CDD|132834 cd07301, PX_SNX21, The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1005
PF02194185 PXA: PXA domain; InterPro: IPR003114 This domain i 100.0
smart00313176 PXA Domain associated with PX domains. unpubl. obs 100.0
cd06872107 PX_SNX19_like_plant The phosphoinositide binding P 99.9
cd06877119 PX_SNX14 The phosphoinositide binding Phox Homolog 99.86
cd06878127 PX_SNX25 The phosphoinositide binding Phox Homolog 99.86
cd07276110 PX_SNX16 The phosphoinositide binding Phox Homolog 99.86
cd06870109 PX_CISK The phosphoinositide binding Phox Homology 99.85
cd07279112 PX_SNX20_21_like The phosphoinositide binding Phox 99.85
cd06873120 PX_SNX13 The phosphoinositide binding Phox Homolog 99.85
cd07301112 PX_SNX21 The phosphoinositide binding Phox Homolog 99.84
cd07280120 PX_YPT35 The phosphoinositide binding Phox Homolog 99.83
cd06875116 PX_IRAS The phosphoinositide binding Phox Homology 99.82
cd06861112 PX_Vps5p The phosphoinositide binding Phox Homolog 99.82
cd06882123 PX_p40phox The phosphoinositide binding Phox Homol 99.82
cd06897108 PX_SNARE The phosphoinositide binding Phox Homolog 99.82
cd06871120 PX_MONaKA The phosphoinositide binding Phox Homolo 99.81
cd07300114 PX_SNX20 The phosphoinositide binding Phox Homolog 99.8
cd06880110 PX_SNX22 The phosphoinositide binding Phox Homolog 99.8
cd06867112 PX_SNX41_42 The phosphoinositide binding Phox Homo 99.8
cd06859114 PX_SNX1_2_like The phosphoinositide binding Phox H 99.8
cd06886106 PX_SNX27 The phosphoinositide binding Phox Homolog 99.8
cd07282124 PX_SNX2 The phosphoinositide binding Phox Homology 99.8
cd06898113 PX_SNX10 The phosphoinositide binding Phox Homolog 99.8
cd07295116 PX_Grd19 The phosphoinositide binding Phox Homolog 99.79
cd07281124 PX_SNX1 The phosphoinositide binding Phox Homology 99.79
cd06864129 PX_SNX4 The phosphoinositide binding Phox Homology 99.79
cd07293123 PX_SNX3 The phosphoinositide binding Phox Homology 99.79
cd06865120 PX_SNX_like The phosphoinositide binding Phox Homo 99.79
cd07277118 PX_RUN The phosphoinositide binding Phox Homology 99.79
cd06862125 PX_SNX9_18_like The phosphoinositide binding Phox 99.79
cd07286127 PX_SNX18 The phosphoinositide binding Phox Homolog 99.79
cd06876133 PX_MDM1p The phosphoinositide binding Phox Homolog 99.79
cd06894123 PX_SNX3_like The phosphoinositide binding Phox Hom 99.79
cd06860116 PX_SNX7_30_like The phosphoinositide binding Phox 99.78
cd06868120 PX_HS1BP3 The phosphoinositide binding Phox Homolo 99.78
cd06863118 PX_Atg24p The phosphoinositide binding Phox Homolo 99.78
cd07283116 PX_SNX30 The phosphoinositide binding Phox Homolog 99.78
cd06866105 PX_SNX8_Mvp1p_like The phosphoinositide binding Ph 99.77
cd07285126 PX_SNX9 The phosphoinositide binding Phox Homology 99.76
cd07284116 PX_SNX7 The phosphoinositide binding Phox Homology 99.76
cd06881117 PX_SNX15_like The phosphoinositide binding Phox Ho 99.76
cd07294132 PX_SNX12 The phosphoinositide binding Phox Homolog 99.76
cd06883109 PX_PI3K_C2 The phosphoinositide binding Phox Homol 99.76
cd06885104 PX_SNX17_31 The phosphoinositide binding Phox Homo 99.75
cd06893132 PX_SNX19 The phosphoinositide binding Phox Homolog 99.75
cd06874127 PX_KIF16B_SNX23 The phosphoinositide binding Phox 99.74
cd07287118 PX_RPK118_like The phosphoinositide binding Phox H 99.74
cd07288118 PX_SNX15 The phosphoinositide binding Phox Homolog 99.72
cd06884111 PX_PI3K_C2_68D The phosphoinositide binding Phox H 99.7
cd06879138 PX_UP1_plant The phosphoinositide binding Phox Hom 99.7
cd06895140 PX_PLD The phosphoinositide binding Phox Homology 99.7
cd06869119 PX_UP2_fungi The phosphoinositide binding Phox Hom 99.69
cd06093106 PX_domain The Phox Homology domain, a phosphoinosi 99.68
cd06888119 PX_FISH The phosphoinositide binding Phox Homology 99.68
cd07296135 PX_PLD1 The phosphoinositide binding Phox Homology 99.67
smart00312105 PX PhoX homologous domain, present in p47phox and 99.65
cd07289109 PX_PI3K_C2_alpha The phosphoinositide binding Phox 99.64
cd06887118 PX_p47phox The phosphoinositide binding Phox Homol 99.64
PF00787113 PX: PX domain; InterPro: IPR001683 The PX (phox) d 99.62
cd07290109 PX_PI3K_C2_beta The phosphoinositide binding Phox 99.6
cd06890112 PX_Bem1p The phosphoinositide binding Phox Homolog 99.58
cd06891140 PX_Vps17p The phosphoinositide binding Phox Homolo 99.56
KOG2527144 consensus Sorting nexin SNX11 [Intracellular traff 99.53
PF08628113 Nexin_C: Sorting nexin C terminal; InterPro: IPR01 99.48
cd07297130 PX_PLD2 The phosphoinositide binding Phox Homology 99.45
KOG1259 490 consensus Nischarin, modulator of integrin alpha5 99.43
cd07292141 PX_SNX6 The phosphoinositide binding Phox Homology 99.39
cd07291141 PX_SNX5 The phosphoinositide binding Phox Homology 99.38
cd06889121 PX_NoxO1 The phosphoinositide binding Phox Homolog 99.37
cd06892141 PX_SNX5_like The phosphoinositide binding Phox Hom 99.35
KOG2273503 consensus Membrane coat complex Retromer, subunit 99.17
cd06896101 PX_PI3K_C2_gamma The phosphoinositide binding Phox 99.11
KOG2528490 consensus Sorting nexin SNX9/SH3PX1 and related pr 98.91
KOG2101362 consensus Intermediate filament-like protein, sort 98.83
COG5391524 Phox homology (PX) domain protein [Intracellular t 98.69
KOG3784407 consensus Sorting nexin protein SNX27 [General fun 98.37
KOG09051639 consensus Phosphoinositide 3-kinase [Signal transd 98.04
KOG4773386 consensus NADPH oxidase [Energy production and con 97.86
cd07298115 PX_RICS The phosphoinositide binding Phox Homology 97.42
cd07278114 PX_RICS_like The phosphoinositide binding Phox Hom 96.94
cd07299113 PX_TCGAP The phosphoinositide binding Phox Homolog 96.91
KOG2101362 consensus Intermediate filament-like protein, sort 92.89
KOG1660399 consensus Sorting nexin SNX6/TFAF2, contains PX do 88.54
PLN02866 1068 phospholipase D 84.31
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains Back     alignment and domain information 
Probab=100.00  E-value=8.7e-36  Score=307.48  Aligned_cols=181  Identities=31%  Similarity=0.606  Sum_probs=158.9

Q ss_pred             ChhHHHHHHHHHHHHHHhcccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 001848          106 SPVVEDAIDKFTRHLVSEWVTDLWYSRLTRDKEGPEELVQIINGVLGEFSGRLRNINLIDLLTRDFVNLICTHLELFRAT  185 (1005)
Q Consensus       106 sp~Vd~aL~~li~~IIrDFV~~sWY~~IS~D~eF~~elr~~L~~~i~~L~~Rl~~VD~~~lL~~~lv~ll~~HL~~yr~A  185 (1005)
                      ||.|+++|++++++|+|||| .+||+.||+|++|+++++..|++++.++..|+++||+.++++.+++++++.|++.||.|
T Consensus         1 s~~vd~~l~~li~~I~rdfV-~sWY~~Is~d~~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a   79 (185)
T PF02194_consen    1 SPEVDEALHELIDLILRDFV-NSWYSKISPDPEFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREA   79 (185)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-HhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccCCCcchhhhhHHHHHHHHhcC-CCCcc-CCChHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhH
Q 001848          186 QAKIEKQHSEPLTIERRDIEIRCVLAAEN-KLHPA-LFSAEAEHKVLQCLMDSLISFTFRPQDLQCSFFRYIVRELLACA  263 (1005)
Q Consensus       186 ~~~v~~~~~~~ls~e~rd~~l~~~l~~~~-~LHpA-L~s~e~E~~YLR~l~e~LL~~LLP~~d~~s~~~r~LLREILA~~  263 (1005)
                      +++.+.........+.....+..+..... .+||| +.+++.|.+|||.+++.||+.+||+++.+|++++.|+||||||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~a~~~~~~~e~~ylr~l~~~ll~~llp~~~~~s~~~~~l~rEILa~~  159 (185)
T PF02194_consen   80 RERLSEDSSSSSQSESSELDLFIASEYEKAHLHPAVLSSPESELEYLRKLSERLLPFLLPPEELSSPPVRLLLREILACQ  159 (185)
T ss_pred             HhhhccccccccccchhhhHHHHHHhccccCCCchhccccchHHHHHHHHHHHHHHHHCChhhccccHHHHHHHHHHHHH
Confidence            99984332221111111222333333334 49999 88999999999999999999999999999999999999999999


Q ss_pred             hHHhhhc-cCChhHHHHHHHHHHHH
Q 001848          264 VMRPVLN-LANPRFINERIESLAVS  287 (1005)
Q Consensus       264 VL~Pli~-LSDPD~INq~Ii~ll~~  287 (1005)
                      ||.|+|+ +|||||||++|++++++
T Consensus       160 VL~p~i~~lsdPd~iN~~ii~~~~~  184 (185)
T PF02194_consen  160 VLLPLIDKLSDPDFINQLIIKLLEK  184 (185)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence            9999999 99999999999998875

The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
>smart00313 PXA Domain associated with PX domains Back     alignment and domain information
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins Back     alignment and domain information
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 Back     alignment and domain information
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 Back     alignment and domain information
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 Back     alignment and domain information
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase Back     alignment and domain information
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 Back     alignment and domain information
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 Back     alignment and domain information
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 Back     alignment and domain information
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 Back     alignment and domain information
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected Back     alignment and domain information
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p Back     alignment and domain information
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase Back     alignment and domain information
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi Back     alignment and domain information
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase Back     alignment and domain information
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 Back     alignment and domain information
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 Back     alignment and domain information
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 Back     alignment and domain information
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 Back     alignment and domain information
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 Back     alignment and domain information
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 Back     alignment and domain information
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 Back     alignment and domain information
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 Back     alignment and domain information
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 Back     alignment and domain information
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 Back     alignment and domain information
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 Back     alignment and domain information
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins Back     alignment and domain information
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains Back     alignment and domain information
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 Back     alignment and domain information
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 Back     alignment and domain information
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p Back     alignment and domain information
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins Back     alignment and domain information
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 Back     alignment and domain information
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 Back     alignment and domain information
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein Back     alignment and domain information
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 Back     alignment and domain information
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p Back     alignment and domain information
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 Back     alignment and domain information
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 Back     alignment and domain information
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins Back     alignment and domain information
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 Back     alignment and domain information
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 Back     alignment and domain information
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 Back     alignment and domain information
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 Back     alignment and domain information
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins Back     alignment and domain information
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 Back     alignment and domain information
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein Back     alignment and domain information
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins Back     alignment and domain information
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D Back     alignment and domain information
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins Back     alignment and domain information
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module Back     alignment and domain information
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein Back     alignment and domain information
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 Back     alignment and domain information
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox Back     alignment and domain information
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase Back     alignment and domain information
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] Back     alignment and domain information
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p Back     alignment and domain information
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p Back     alignment and domain information
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family Back     alignment and domain information
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 Back     alignment and domain information
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 Back     alignment and domain information
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 Back     alignment and domain information
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 Back     alignment and domain information
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases Back     alignment and domain information
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] Back     alignment and domain information
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG4773 consensus NADPH oxidase [Energy production and conversion] Back     alignment and domain information
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS Back     alignment and domain information
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins Back     alignment and domain information
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein Back     alignment and domain information
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms] Back     alignment and domain information
>PLN02866 phospholipase D Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1005
1xte_A154 Serine/threonine-protein kinase SGK3; CISK, PX dom 2e-24
3p0c_A130 Nischarin; structural genomics, structural genomic 4e-24
2v14_A134 Kinesin-like motor protein C20ORF23; plus-END kine 2e-21
2ett_A128 Sorting nexin-22; PX domain, BC019655, SNX22_human 2e-19
2wwe_A127 Phosphoinositide-3-kinase, class 2, gamma polypept 4e-18
2l73_A149 NADPH oxidase organizer 1; cell membrane, PX domai 7e-18
2ar5_A121 Phosphoinositide 3-kinase; PX domain, transferase; 6e-17
1kq6_A141 NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha 9e-17
1h6h_A143 Neutrophil cytosol factor 4; PX domain; HET: PIB; 2e-16
2iwl_X140 Phosphatidylinositol-4-phosphate 3-kinase C2 domai 5e-16
3lui_A115 Sorting nexin-17, SNX17; PX domain, endosome, phos 2e-15
2v6v_A156 BUD emergence protein 1; homotypic fusion, regulat 1e-13
1kmd_A117 VAM7P, vacuolar morphogenesis protein VAM7; PX dom 3e-13
3iq2_A138 Sorting nexin-7; SNX7, PHOX, protein signalling, S 2e-11
2csk_A146 Sorting nexin 12; SNX12, PX domain, structural gen 2e-10
3dyt_A366 Sorting nexin-9; 3-helix bundle, BAR domain, PX do 8e-09
2i4k_A128 Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al 3e-08
1ocs_A162 Sorting nexin GRD19; sorting protein, PX-domain, y 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
4akv_A386 Sorting nexin-33; transport protein, organelle bio 3e-06
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 Back     alignment and structure
 Score = 99.6 bits (248), Expect = 2e-24
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)

Query: 669 EVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLK-FFQEYNLHLPPK 727
            +  ++  +   + F VY + V+    + W + RR+  F++L+  LK  F    L +P K
Sbjct: 11  SIPSSDEHREKKKRFTVYKVLVS-VGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAK 69

Query: 728 HFLSTGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDSQTYAFSNPFSIVET 787
                  D   I++R   L+ +++ L++ P +    +V  FL +DS  +         E 
Sbjct: 70  RIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPRHQSDPSEDEDER 129

Query: 788 LS 789
            +
Sbjct: 130 ST 131
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 Back     alignment and structure
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 Back     alignment and structure
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127 Back     alignment and structure
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149 Back     alignment and structure
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121 Back     alignment and structure
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141 Back     alignment and structure
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143 Back     alignment and structure
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140 Back     alignment and structure
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 Back     alignment and structure
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156 Back     alignment and structure
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117 Back     alignment and structure
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 Back     alignment and structure
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 Back     alignment and structure
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1005
d1xtea_116 d.189.1.1 (A:) Serine/threonine-protein kinase Sgk 1e-17
d1kq6a_140 d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo 3e-14
d1h6ha_143 d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo 3e-13
d1kmda_117 d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces 5e-12
d1ocsa_132 d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast 3e-08
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 673 ANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRL-KFFQEYNLHLPPKHFLS 731
           ++  +   + F VY + V+    + W + RR+  F++L+  L K F    L +P K    
Sbjct: 12  SDEHREKKKRFTVYKVLVS-VGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFG 70

Query: 732 TGLDVSVIQERCKLLDRYLKMLLQLPTVSGSIEVWDFLSVDS 773
              D   I++R   L+ +++ L++ P +    +V  FL +DS
Sbjct: 71  DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDS 112
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 Back     information, alignment and structure
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1005
d1xtea_116 Serine/threonine-protein kinase Sgk3, Cisk {Mouse 99.8
d1h6ha_143 p40phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.77
d1ocsa_132 Sorting nexin grd19 {Baker's yeast (Saccharomyces 99.76
d1kq6a_140 p47phox NADPH oxidase {Human (Homo sapiens) [TaxId 99.74
d1kmda_117 Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T 99.69
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PX domain
superfamily: PX domain
family: PX domain
domain: Serine/threonine-protein kinase Sgk3, Cisk
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.3e-19  Score=147.27  Aligned_cols=106  Identities=25%  Similarity=0.509  Sum_probs=94.0

Q ss_pred             EEEEECEEEEECCCCCEEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99980208980898772999999982799748998122019999999970-23788889995224898997899999999
Q 001848          667 RCEVLGANIVKSDSRTFAVYAIAVTDSNNNSWSIKRRFRHFEELHRRLKF-FQEYNLHLPPKHFLSTGLDVSVIQERCKL  745 (1005)
Q Consensus       667 ~v~I~~~~i~~~g~k~y~vY~I~V~~~~~~~w~V~RRYSeF~~LH~~Lk~-yp~~~p~LP~K~~f~~n~d~~fiEkRr~~  745 (1005)
                      .+.|+.+....+++++|++|.|.|+.+ +..|.|+||||||++||++|++ |+...+++|+++.+.++++++++++||.+
T Consensus         6 ~i~I~~~~~~~~~~k~~~~Y~I~v~~~-~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~~~~~~~~l~~Rr~~   84 (116)
T d1xtea_           6 SVSIPSSDEHREKKKRFTVYKVLVSVG-RSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAG   84 (116)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEET-TEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSCTTCHHHHHHHHHH
T ss_pred             CEEECCCEEECCCCCCEEEEEEEEEEC-CCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             079687227221798789999999989-9189998169999999999987778777888776425675689999999999


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHCCCCCCC
Q ss_conf             9999999752988778644421356555
Q 001848          746 LDRYLKMLLQLPTVSGSIEVWDFLSVDS  773 (1005)
Q Consensus       746 Le~YLq~LL~~p~i~~s~~l~~FL~~~~  773 (1005)
                      |+.||+.|+++|.+++++.+++||+.++
T Consensus        85 L~~yL~~l~~~~~l~~~~~~~~FL~~d~  112 (116)
T d1xtea_          85 LNEFIQNLVRYPELYNHPDVRAFLQMDS  112 (116)
T ss_dssp             HHHHHHHHTTCHHHHTSHHHHHHTTTTC
T ss_pred             HHHHHHHHHHCHHHHCCHHHHHHCCCCC
T ss_conf             9999999972975636969985548999
>d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure