Citrus Sinensis ID: 001850

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-----
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF
cccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHcccHHHHHHHHHHHHcccEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHccccEEEEEcccHHHHHHccccccEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEcccccEEEcccccEEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEEcccccEEEEEEEccccccccccccEEEcccccccEEEEccccEEEEEEcccccEEEEEEccccEEEEEEEEEEEEEEEcccccccEEEEcccccccccccccEEEEEEEccEEEEEEEEEccEEEEEEEEEcccccEEEEEEEccccccccccEEEEEEEEEEcccccEEEEcccccccccccccccccccccccccccccEEccccEEEEEEcccEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEccccccHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHcccccccccEEEEcccccccccccEEEEEcccccccHHHccccEEEEcccccccccccccccccccccEEEEcccEEEEEEEEc
ccHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccEEEEEEccccccccEEEHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccHHHHHHHHHHHHcccEEEcccccccEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEccHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEEEcccccccccccEEEEEEcccccccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEEEEccEEEEEEccccccEEEEEEccccEEEEEEEEEEEEEcccccccccEEEEccccccccccccccEEEEEEccHHHHHHHHccHHHHHEEEEcccccEEEEEEEEcccccccccccEEEEEEEEEcccccEEEEccccHHHHHHHHcccccccccccccHHHHcEEEccEEEEEcccEEEEEEEcccEEEEcccccEEEEEEEEEEcccccccccccEccccEEcccccEEEEEcEEEEEEccccccHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHccccccccccEEEEHHHHcccccEEEEEEEEccccccHHHHcccEEEEcccccccccccccccccccccEEEEcccEEEEEEEEc
MEELKSLASVLLCVLCLCSavvngsdyvkyntgagvvAGKLNVHLVAHshddvgwlktVDQYYVGSNNSIQSACVENVLDSVVEALrrdpnrkfVFAEMAFFhrwwvgqspeIQEQVRKLVDAsqlefvnggwcmhdeatthyvdmidqttlgHHYIKQhfnktpkagwqidpfghSAVQAYLLGVELGFDSVHFARIDYQDrakrkedksLEVIWRgsktfgsssqiftnafpvhysppsgfhfeltddfdpvqdnplldgynveQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGgrvnalystpslyteaknaangpwplktddyfpyadrrnaywtgfftsrpalkGYVRVLSGFYLASRQLEFlagkkspgpttsaLGDALGIaqhhdavtgtakqhtTNDYAKRLAIGASEAEVVVSSSLSclasrksghqctkpastfsqcpllnisycpptekgipegknLVVAAynplgwnrtdiiripvndanlivkdplgnainVQYVNLDNVTSNLRKFYTEAylgqsskrvprYWLLFQvtvpplgwntyFISRAAGKVKRRKgfflaadspqdktvevgpgnlkmsfSRTTGQLKRMynsrtgvdvpiqQSFLWYgsmvdtqssgayifrpngaqpnvvsrsvpikiirgpmvdEVHQQFNSWIYQVTRLYidkehaeveytigpiptedsvgKEVISRMTANMVTEKVfytdsngrDFLKRVRDYRAdwslqvnepvagnyyplnlgifitdkkseFSVLVdratggasikdGQVEIMLHRRMladdgrgvgealdesvcvrdncegltvrgNYYLSVNQlgagarwrrttgqevysPLLLAFTQEKLETWTEshltkstamesdyslplNVALITLEELDDGSVLLRLAHLYeegedaeySTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKvegesgkthspvrggpldastLVVELGPMEIRTFLLKF
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYqdrakrkedkslevIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEaknaangpwplkTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASrksghqctkpastfsqcpllNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLgqsskrvprYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFflaadspqdktvevgpgnlkmsfSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYifrpngaqpnvvSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVeytigpiptedsvgKEVISRMTAnmvtekvfytdsngrdfLKRVRDYRADwslqvnepvagnyYPLNLGIFITDKKSEFSVLVDRatggasikdgqvEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYeegedaeystLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGEsgkthspvrggpldASTLVVELGPMEIRTFLLKF
MEELKslasvllcvlclcsavvNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGaseaevvvssslsclasRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF
******LASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRA******SLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLA*************DALGIAQHHDAVTGTA**HTTNDYAKRLAIGASEAEVVVSSSLSCLA***********ASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAA*************************LKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELK***************************************************TLVVELGPMEIRTFL***
****KSLASVLLCVLCLCSAVVNGSDYVKYNT**GVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEK***EGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRA***************S**DKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYL*****************EVYSPLLL*********************ESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTW**********************LVVELGPMEIRTFLLKF
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLS**************ASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKV***********RGGPLDASTLVVELGPMEIRTFLLKF
*EELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG****************DKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGE***************STLVVELGPMEIRTFLLKF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEELKSLASVLLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1005 2.2.26 [Sep-21-2011]
Q8VHC81007 Lysosomal alpha-mannosida yes no 0.929 0.927 0.405 0.0
O464321007 Lysosomal alpha-mannosida N/A no 0.917 0.915 0.401 0.0
O091591013 Lysosomal alpha-mannosida yes no 0.931 0.923 0.403 0.0
O007541011 Lysosomal alpha-mannosida yes no 0.918 0.912 0.4 0.0
Q60HE91012 Lysosomal alpha-mannosida N/A no 0.918 0.912 0.399 0.0
Q29451999 Lysosomal alpha-mannosida yes no 0.933 0.938 0.389 0.0
P340981010 Lysosomal alpha-mannosida yes no 0.948 0.943 0.365 0.0
P496411150 Alpha-mannosidase 2x OS=H no no 0.743 0.649 0.281 5e-83
Q8BRK91152 Alpha-mannosidase 2x OS=M no no 0.749 0.653 0.284 6e-83
Q167061144 Alpha-mannosidase 2 OS=Ho no no 0.898 0.789 0.257 1e-81
>sp|Q8VHC8|MA2B1_CAVPO Lysosomal alpha-mannosidase OS=Cavia porcellus GN=MAN2B1 PE=1 SV=1 Back     alignment and function desciption
 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/1000 (40%), Positives = 565/1000 (56%), Gaps = 66/1000 (6%)

Query: 24   GSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVV 83
            G+    Y T   V  G LNVHLVAH+HDDVGWLKTVDQYY G +N +Q A V+ +LDSV+
Sbjct: 44   GARAAGYETCPMVQPGMLNVHLVAHTHDDVGWLKTVDQYYWGIHNDLQQAGVQYILDSVI 103

Query: 84   EALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHY 143
             AL  +P R+FV+ EMAFF RWW  Q+ E QE VR+LV   +LEF NGGW M+DEA THY
Sbjct: 104  SALLAEPTRRFVYVEMAFFSRWWHQQTNETQEVVRRLVRQGRLEFANGGWVMNDEAATHY 163

Query: 144  VDMIDQTTLGHHYIKQHF--NKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQ 201
              ++DQ TLG  +++  F  +  P+  W IDPFGHS  QA L   ++GFD V F RIDYQ
Sbjct: 164  GAIVDQMTLGLRFLEDTFGSDGRPRVAWHIDPFGHSREQASLFA-QMGFDGVFFGRIDYQ 222

Query: 202  DRAKRKEDKSLEVIWRGSKTF-GSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLL 260
            D+  RK+ + +E++WR S +    ++ +FT   P +Y PP G  +++     PV D+P  
Sbjct: 223  DKLVRKKRREMELVWRASASLKAPAADLFTGVLPNNYGPPEGLCWDVLCADPPVVDDPRS 282

Query: 261  DGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVN---- 316
              YN ++ V+ F+  A  Q    R NH + TMG DFQY+ A +WFK +DKLI  VN    
Sbjct: 283  PEYNAKKLVSYFLQLATAQGRYYRTNHTVMTMGSDFQYENANTWFKNLDKLIQLVNMQQA 342

Query: 317  KGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRV 376
             G RV+ LYSTP+ Y    N AN  WP+K DD+FPYAD  + +WTG+F+SRPALK Y R+
Sbjct: 343  NGSRVHVLYSTPACYLWELNKANLTWPVKEDDFFPYADGPHMFWTGYFSSRPALKRYERL 402

Query: 377  LSGFYLASRQLEFLAGKKSP-GP----TTSALGDALGIAQHHDAVTGTAKQHTTNDYAKR 431
               F     QLE   G  +  GP     +S L  A+ + QHHDAV+GT+KQH  +DYA++
Sbjct: 403  SYNFLQVCNQLEAQVGPAANVGPYGHGDSSPLNQAMAVLQHHDAVSGTSKQHVADDYARQ 462

Query: 432  LAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLV 491
            LA G    EV++S++L+ L+  K          TF  C  LNIS CP ++      +   
Sbjct: 463  LAAGWGPCEVLLSNALAKLSGSKE---------TFLFCRDLNISICPFSQTS----ERFQ 509

Query: 492  VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQS 551
            V  YNPLG     ++R+PV     ++KDP  N +    V L                  +
Sbjct: 510  VLVYNPLGRKVDRMVRLPVRKGLFLIKDPGNNTVPSTVVEL------------------T 551

Query: 552  SKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMS 611
            S   P   LLF   VP LG++ Y ++R + +  + +             + +    L+ S
Sbjct: 552  SSGNPE--LLFPALVPALGFSVYSVTRVSDQNPQTRSQHSRPQKYSSPVLSIKNEYLRAS 609

Query: 612  FSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV----DTQSSGAYIFRPNGAQPNVVSRS 667
            F   TG L  +      + +P+ Q+F WY + V     +Q+SGAYIFRP+   P  VS  
Sbjct: 610  FHPDTGLLSMIEVLDRKLTLPVNQAFFWYNASVGDKRSSQASGAYIFRPSQQWPFPVSHL 669

Query: 668  VPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTA 727
               ++++  +V EVHQ F +W  QV RLY  + H E+E+T+GPIP  D  GKE+ISR   
Sbjct: 670  ARTRLVKTALVQEVHQNFTAWCSQVVRLYSGQRHLELEWTVGPIPVGDKWGKEIISRFDT 729

Query: 728  NMVTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLV 787
             + T  VF+TDSNGR+ L+R RDYR  W L   EPVAGNYYP+N  I+ITD K + +VL 
Sbjct: 730  PLETGGVFFTDSNGREVLERRRDYRPSWKLNQTEPVAGNYYPVNSRIYITDGKMQLTVLT 789

Query: 788  DRATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQL 847
            DR+ GG+S+ DG +E+M+HRR+L DDGRGVGEAL E         G  VRG + L ++  
Sbjct: 790  DRSQGGSSMSDGSLELMVHRRLLKDDGRGVGEALQEP------GSGGWVRGRHLLLLDTA 843

Query: 848  -GAGARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDY--SLPLNVALITLE 904
              A A  R    +E+ +P L+    +      + H        S     LP +V L+TL 
Sbjct: 844  REAAAEHRLLAEKELLAPQLVLAPGQGPSYHHDHHEAVPRKQFSGLRRQLPPSVRLLTLA 903

Query: 905  ELDDGSVLLRLAHLYEEGEDAE--YSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMK 962
                 ++LLRL H +  GED+    S    ++L+ +F   +I +L+E +L+ANQ +    
Sbjct: 904  RWGPDTLLLRLEHQFALGEDSSRNLSLPVTLDLQDLFSTFTITRLQETTLAANQLRASAS 963

Query: 963  KMTWKVEGESGKTHSPVRGGPLDASTLVVELGPMEIRTFL 1002
            ++ W  E +     +  R   LD S++ ++  PMEIRTF+
Sbjct: 964  RLKWTTEIDPISRPAVPR---LDPSSITLQ--PMEIRTFV 998
Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.
Cavia porcellus (taxid: 10141)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 4
>sp|O46432|MA2B1_FELCA Lysosomal alpha-mannosidase OS=Felis catus GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4 Back     alignment and function description
>sp|O00754|MA2B1_HUMAN Lysosomal alpha-mannosidase OS=Homo sapiens GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|Q60HE9|MA2B1_MACFA Lysosomal alpha-mannosidase OS=Macaca fascicularis GN=MAN2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q29451|MA2B1_BOVIN Lysosomal alpha-mannosidase OS=Bos taurus GN=MAN2B1 PE=1 SV=3 Back     alignment and function description
>sp|P34098|MANA_DICDI Lysosomal alpha-mannosidase OS=Dictyostelium discoideum GN=manA PE=1 SV=2 Back     alignment and function description
>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3 Back     alignment and function description
>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2 Back     alignment and function description
>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1005
2240713251011 predicted protein [Populus trichocarpa] 0.987 0.981 0.797 0.0
2254310961006 PREDICTED: lysosomal alpha-mannosidase [ 0.992 0.991 0.769 0.0
3565611361012 PREDICTED: lysosomal alpha-mannosidase-l 0.996 0.989 0.750 0.0
3575179831018 Lysosomal alpha-mannosidase [Medicago tr 0.993 0.980 0.754 0.0
3565027761012 PREDICTED: lysosomal alpha-mannosidase-l 0.996 0.989 0.756 0.0
3565027781028 PREDICTED: lysosomal alpha-mannosidase-l 0.996 0.973 0.744 0.0
3564953561004 PREDICTED: lysosomal alpha-mannosidase-l 0.984 0.985 0.751 0.0
4494914561007 PREDICTED: lysosomal alpha-mannosidase-l 0.983 0.981 0.718 0.0
4494344761007 PREDICTED: lysosomal alpha-mannosidase-l 0.983 0.981 0.720 0.0
357145698998 PREDICTED: lysosomal alpha-mannosidase-l 0.968 0.974 0.685 0.0
>gi|224071325|ref|XP_002303405.1| predicted protein [Populus trichocarpa] gi|222840837|gb|EEE78384.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1657 bits (4292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 794/996 (79%), Positives = 862/996 (86%), Gaps = 4/996 (0%)

Query: 11   LLCVLCLCSAVVNGSDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSI 70
             + V  L   VVNG  YV YNTG GVV GKLNVHLV HSHDDVGWLKTVDQYYVGSNNSI
Sbjct: 19   FVVVFGLHGTVVNGG-YVDYNTGGGVVPGKLNVHLVPHSHDDVGWLKTVDQYYVGSNNSI 77

Query: 71   QSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVN 130
            Q ACVENVLDSVVE+LRRD NRKFVF EMAFF RWWV QS EIQEQVRKLVDA QLEFVN
Sbjct: 78   QGACVENVLDSVVESLRRDSNRKFVFVEMAFFQRWWVEQSEEIQEQVRKLVDAGQLEFVN 137

Query: 131  GGWCMHDEATTHYVDMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGF 190
            GGWCMHDEAT HY+DMIDQTTLGH  IK+ FNKTP+AGWQIDPFGHSAVQAYLLG ELGF
Sbjct: 138  GGWCMHDEATCHYIDMIDQTTLGHRAIKEQFNKTPRAGWQIDPFGHSAVQAYLLGTELGF 197

Query: 191  DSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDD 250
            DSVHFARIDYQDRAKRK+DK+LEVIWRGSKTFGSSSQIF NAFPVHYSPP+GFHFE+ DD
Sbjct: 198  DSVHFARIDYQDRAKRKDDKALEVIWRGSKTFGSSSQIFANAFPVHYSPPNGFHFEVFDD 257

Query: 251  FDPVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDK 310
            F PVQDNPLLD YNVEQ VNDFI+AA+TQANVTR NHIMWTMGDDFQYQYAESWFKQMDK
Sbjct: 258  FVPVQDNPLLDDYNVEQRVNDFINAAMTQANVTRTNHIMWTMGDDFQYQYAESWFKQMDK 317

Query: 311  LIHYVNKGGRVNALYSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPAL 370
            LIHYVNK GRVNALYSTPS+YT+ KNAAN  WPLKTDDYFPYAD  NAYWTGFFTSRPAL
Sbjct: 318  LIHYVNKDGRVNALYSTPSIYTDVKNAANESWPLKTDDYFPYADTENAYWTGFFTSRPAL 377

Query: 371  KGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAK 430
            K YVR LSG+YLA+RQLEFL GKKS GP T  LGDALGIAQHHD VTGTAKQHTTNDY K
Sbjct: 378  KRYVRQLSGYYLAARQLEFLVGKKSTGPNTYRLGDALGIAQHHDGVTGTAKQHTTNDYEK 437

Query: 431  RLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNL 490
            RLAIGA EAE  VSS+LSCL S KS  QC KPA  FSQC LLNISYCPPTE+ I  GK L
Sbjct: 438  RLAIGALEAEATVSSALSCLVSNKSRDQCAKPALNFSQCQLLNISYCPPTEEAIANGKRL 497

Query: 491  VVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQ 550
            V+  YN LGWNRTD+IRIPVND NL+V D  G  I  QYV +DN TSNLR FY +AY G 
Sbjct: 498  VMVLYNALGWNRTDVIRIPVNDPNLVVADSYGKHIETQYVTMDNTTSNLRNFYLKAY-GF 556

Query: 551  SSKRVPRYWLLFQVTVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKM 610
             S +VPRYWL FQV+VPPLGW+TYFI+RA G  KRR G  +  DSPQ+ T+E+G GNLKM
Sbjct: 557  PSIQVPRYWLHFQVSVPPLGWSTYFIARATGIGKRRNGLSV-MDSPQNDTIEIGSGNLKM 615

Query: 611  SFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMVD-TQSSGAYIFRPNGAQPNVVSRSVP 669
            SFS  TGQLKRMYNS+TGVDVPIQQS+ WYGS  +  QSSGAYI RP+G+ P+VV+RSVP
Sbjct: 616  SFSSMTGQLKRMYNSKTGVDVPIQQSYFWYGSSSELMQSSGAYILRPDGSPPHVVARSVP 675

Query: 670  IKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANM 729
            +++ RGP+ DEV QQFNSWIYQVTR+Y D+EHAE+EYTIGPIP EDSVGKEVI+RMTANM
Sbjct: 676  LQVHRGPLFDEVRQQFNSWIYQVTRVYKDQEHAELEYTIGPIPLEDSVGKEVITRMTANM 735

Query: 730  VTEKVFYTDSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDR 789
             TEKVFYTDSNGRDFLKR+RDYRADWSL VNEPVAGNYYPLNLGIF  DK+SE SVLVDR
Sbjct: 736  ATEKVFYTDSNGRDFLKRIRDYRADWSLSVNEPVAGNYYPLNLGIFTMDKRSELSVLVDR 795

Query: 790  ATGGASIKDGQVEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGA 849
            ATGGASI+DGQ+E+MLHRR L DD RGV EALDESVC+ D CEGLT+RGNYYLS+NQ+GA
Sbjct: 796  ATGGASIEDGQLELMLHRRTLHDDSRGVNEALDESVCIGDECEGLTIRGNYYLSINQVGA 855

Query: 850  GARWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDG 909
            GA WRRTTGQE+Y+PLL AFTQEK ET   SH+   TAM+  YSLPLNVALITL+ELDDG
Sbjct: 856  GAVWRRTTGQEIYTPLLAAFTQEKEETSKASHVATGTAMDPGYSLPLNVALITLQELDDG 915

Query: 910  SVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVE 969
            SVLLRLAHLYE GEDA YSTLA VELKKMF GK+IK+LKEMSLS+NQEK EMKKMTWKVE
Sbjct: 916  SVLLRLAHLYEAGEDAAYSTLATVELKKMFSGKAIKELKEMSLSSNQEKSEMKKMTWKVE 975

Query: 970  GESGKTHSPVRGGPLDASTLVVELGPMEIRTFLLKF 1005
            G++G+  SPVRGGP+D+STLVVELGPMEIRTFLL+F
Sbjct: 976  GDNGEQPSPVRGGPVDSSTLVVELGPMEIRTFLLQF 1011

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431096|ref|XP_002265360.1| PREDICTED: lysosomal alpha-mannosidase [Vitis vinifera] gi|297734991|emb|CBI17353.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356561136|ref|XP_003548841.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|357517983|ref|XP_003629280.1| Lysosomal alpha-mannosidase [Medicago truncatula] gi|355523302|gb|AET03756.1| Lysosomal alpha-mannosidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356502776|ref|XP_003520192.1| PREDICTED: lysosomal alpha-mannosidase-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356502778|ref|XP_003520193.1| PREDICTED: lysosomal alpha-mannosidase-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356495356|ref|XP_003516544.1| PREDICTED: lysosomal alpha-mannosidase-like [Glycine max] Back     alignment and taxonomy information
>gi|449491456|ref|XP_004158902.1| PREDICTED: lysosomal alpha-mannosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434476|ref|XP_004135022.1| PREDICTED: lysosomal alpha-mannosidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357145698|ref|XP_003573734.1| PREDICTED: lysosomal alpha-mannosidase-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1005
TAIR|locus:20908171019 AT3G26720 [Arabidopsis thalian 0.971 0.957 0.583 0.0
TAIR|locus:21568571047 AT5G66150 [Arabidopsis thalian 0.640 0.615 0.685 0.0
TAIR|locus:21591431024 AT5G13980 [Arabidopsis thalian 0.968 0.950 0.583 2.60000000198e-315
UNIPROTKB|G5E9281010 MAN2B1 "Mannosidase, alpha, cl 0.479 0.477 0.431 1.4e-185
UNIPROTKB|F1PKB21007 MAN2B1 "Uncharacterized protei 0.484 0.483 0.434 2.3e-185
UNIPROTKB|O007541011 MAN2B1 "Lysosomal alpha-mannos 0.479 0.476 0.431 2.3e-185
UNIPROTKB|F1SEY11008 MAN2B1 "Uncharacterized protei 0.490 0.489 0.431 4.7e-185
UNIPROTKB|F1MMX7999 MAN2B1 "Lysosomal alpha-mannos 0.490 0.493 0.425 4.5e-178
UNIPROTKB|Q29451999 MAN2B1 "Lysosomal alpha-mannos 0.490 0.493 0.423 3.1e-177
FB|FBgn00276111080 LM408 "Lysosomal alpha-mannosi 0.900 0.837 0.378 5.2e-175
TAIR|locus:2090817 AT3G26720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3106 (1098.4 bits), Expect = 0., P = 0.
 Identities = 576/987 (58%), Positives = 729/987 (73%)

Query:    25 SDYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVE 84
             S+Y++YNT   +V  K+NVHLV HSHDDVGWLKTVDQYYVGSNNSI+ ACV+NVLDSV+ 
Sbjct:    22 SEYIEYNTKPRIVPEKINVHLVPHSHDDVGWLKTVDQYYVGSNNSIRGACVQNVLDSVIA 81

Query:    85 ALRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYV 144
             +L  D NRKF++ EMAFF RWW  QS   + +V+KLVD+ QLEF+NGG CMHDEAT HY+
Sbjct:    82 SLLDDENRKFIYVEMAFFQRWWRQQSNAKKVKVKKLVDSGQLEFINGGMCMHDEATPHYI 141

Query:   145 DMIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRA 204
             DMIDQTTLGH +IK  F + P+ GWQIDPFGHSAVQAYLLG E GFDS+ FARIDYQDRA
Sbjct:   142 DMIDQTTLGHQFIKTEFGQVPRVGWQIDPFGHSAVQAYLLGAEFGFDSLFFARIDYQDRA 201

Query:   205 KRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYN 264
             KR  +K+LEVIW+GSK+ GSSSQIFT  FP HY PP GF FE+ D   P+QD+PLL  YN
Sbjct:   202 KRLREKTLEVIWQGSKSLGSSSQIFTGVFPRHYDPPEGFTFEINDVSAPIQDDPLLFDYN 261

Query:   265 VEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNKGGRVNAL 324
             V++ VNDF+ AAL Q NVTR NHIMW MG DF+YQYA SWF+Q+DK IHYVNK GR+N L
Sbjct:   262 VQERVNDFVAAALAQVNVTRTNHIMWLMGTDFRYQYAYSWFRQIDKFIHYVNKDGRLNVL 321

Query:   325 YSTPSLYTEAKNAANGPWPLKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLAS 384
             YSTPS+YT+AK AAN  WPLKTDD+FPYAD+ NAYWTG+FTSRPA K YVR LSG+YLA+
Sbjct:   322 YSTPSIYTDAKYAANESWPLKTDDFFPYADKPNAYWTGYFTSRPAFKKYVRDLSGYYLAA 381

Query:   385 RQLEFLAGKKSPGPTTSALGDALGIAQHHDAVTGTAKQHTTNDYAKRLAIGXXXXXXXXX 444
             RQLEFL G+ S GPTT  L DAL IAQHHDAV+GT +QH   DYA RL++G         
Sbjct:   382 RQLEFLRGRDSSGPTTDMLADALAIAQHHDAVSGTQRQHVAADYALRLSMGYLQAEKLVA 441

Query:   445 XXXXXXXXRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWNRTD 504
                      KS  +   P + F QCPLLNISYCP +E  +  GK+LVV  YN LGW R +
Sbjct:   442 SSLSFLSAAKSSTEKKNPGTKFQQCPLLNISYCPASEARLLSGKSLVVVVYNSLGWKREE 501

Query:   505 IIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQV 564
             ++R+PV+  N+IVKD  G  +  Q + L  +   +R  Y +AYLG+S +   ++ L F  
Sbjct:   502 VVRVPVSSENVIVKDASGKEVVFQLLPLSEIALRIRNEYVKAYLGRSPRDTAKHVLAFTA 561

Query:   565 TVPPLGWNTYFISRAAGKVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYN 624
             +VPPLG+++Y IS   G+  R            ++ VEVG GNLK+ +S    ++ R  +
Sbjct:   562 SVPPLGFSSYVISDT-GRTARGLSASYVTSGSMNQNVEVGQGNLKLRYSEEGVKITRHLS 620

Query:   625 SRTGVDVPIQQSFLWY----GSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDE 680
             ++    V  +QS+ +Y    G+  D Q+SGAY+FRP+G  P        + I++GP+ DE
Sbjct:   621 TKN--QVTAEQSYAYYIGSNGTDKDPQASGAYVFRPDGVLPIKSKEEAQLTIVQGPLFDE 678

Query:   681 VHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSN 740
             VHQ+ NSWI Q+TR+Y  K HAE+E+TIGPIP +D + KE+I+++T  M T   FYTDSN
Sbjct:   679 VHQELNSWISQITRVYKGKNHAEIEFTIGPIPADDGISKEIITKLTTTMKTNGTFYTDSN 738

Query:   741 GRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQ 800
             GRDF+KR+RD+R DW LQV +PVAGNYYPLNLGI++ DK SE SVLVDRA GG+S+++GQ
Sbjct:   739 GRDFIKRIRDFRTDWDLQVYQPVAGNYYPLNLGIYMQDKTSELSVLVDRAVGGSSLENGQ 798

Query:   801 VEIMLHRRMLADDGRGVGEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGARWRRTTGQE 860
             +E+MLHRRM  DD RGVGE L+E+VC+ + C+GLT++G +Y+ +++ G GA+WRRT GQE
Sbjct:   799 IELMLHRRMQHDDIRGVGEILNETVCLPEGCKGLTIQGKFYVQIDKPGDGAKWRRTFGQE 858

Query:   861 VYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPLNVALITLEELDDGSVLLRLAHLYE 920
             +YSPLL+AFT+++ ++W  SH T  +A E  YSLP NVAL+TL+EL++G VLLRLAHL+E
Sbjct:   859 IYSPLLIAFTEQEGDSWINSHKTTFSAFEPSYSLPKNVALLTLQELENGEVLLRLAHLFE 918

Query:   921 EGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKK--MTWKVEGESGKTHSP 978
              GED+EYS +AKVELKK+F  K I+++KE SLS NQEK EM+K  + WKVEG +G+    
Sbjct:   919 VGEDSEYSVMAKVELKKLFHNKKIREVKETSLSGNQEKAEMEKRRLIWKVEGSAGEEVK- 977

Query:   979 VRGGPLDASTLVVELGPMEIRTFLLKF 1005
              RG  +DA  LVVEL PMEIRT L+KF
Sbjct:   978 -RGEAVDAEKLVVELVPMEIRTLLIKF 1003
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004559 "alpha-mannosidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006013 "mannose metabolic process" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0015923 "mannosidase activity" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2156857 AT5G66150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159143 AT5G13980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G5E928 MAN2B1 "Mannosidase, alpha, class 2B, member 1, isoform CRA_a" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKB2 MAN2B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O00754 MAN2B1 "Lysosomal alpha-mannosidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SEY1 MAN2B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMX7 MAN2B1 "Lysosomal alpha-mannosidase D peptide" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q29451 MAN2B1 "Lysosomal alpha-mannosidase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0027611 LM408 "Lysosomal alpha-mannosidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VHC8MA2B1_CAVPO3, ., 2, ., 1, ., 2, 40.4050.92930.9275yesno
P34098MANA_DICDI3, ., 2, ., 1, ., 2, 40.36590.94820.9435yesno
Q29451MA2B1_BOVIN3, ., 2, ., 1, ., 2, 40.38900.93330.9389yesno
O00754MA2B1_HUMAN3, ., 2, ., 1, ., 2, 40.40.91840.9129yesno
O09159MA2B1_MOUSE3, ., 2, ., 1, ., 2, 40.4030.93130.9239yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_III000676
hypothetical protein (1011 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1005
cd10810278 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic 1e-173
PLN027011050 PLN02701, PLN02701, alpha-mannosidase 1e-118
cd00451258 cd00451, GH38N_AMII_euk, N-terminal catalytic doma 1e-111
pfam01074269 pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam 8e-96
cd10809340 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal 4e-79
cd11666344 cd11666, GH38N_Man2A1, N-terminal catalytic domain 3e-55
cd11667344 cd11667, GH38N_Man2A2, N-terminal catalytic domain 5e-55
cd10811326 cd10811, GH38N_AMII_Epman_like, N-terminal catalyt 5e-54
cd10786251 cd10786, GH38N_AMII_like, N-terminal catalytic dom 6e-51
pfam07748379 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases fa 5e-49
smart0087279 smart00872, Alpha-mann_mid, Alpha mannosidase, mid 3e-22
pfam0926182 pfam09261, Alpha-mann_mid, Alpha mannosidase, midd 3e-20
cd10789252 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catal 3e-10
cd10785203 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain 1e-09
cd10812258 cd10812, GH38N_AMII_ScAms1_like, N-terminal cataly 1e-06
cd10813252 cd10813, GH38N_AMII_Man2C1, N-terminal catalytic d 7e-05
cd10814271 cd10814, GH38N_AMII_SpGH38_like, N-terminal cataly 3e-04
cd10791254 cd10791, GH38N_AMII_like_1, N-terminal catalytic d 0.001
cd10793279 cd10793, GH57N_TLGT_like, N-terminal catalytic dom 0.001
>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information 
 Score =  506 bits (1306), Expect = e-173
 Identities = 165/279 (59%), Positives = 207/279 (74%), Gaps = 3/279 (1%)

Query: 41  LNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMA 100
           LNVHLV H+HDDVGWLKTVDQYY GSNNSIQ A V+ +LDSV+E L ++P+RKF++ E+A
Sbjct: 1   LNVHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIA 60

Query: 101 FFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQH 160
           FF RWW  QS + +++V+KLV   QLEF+NGGWCM+DEATTHY D+IDQ TLGH ++K  
Sbjct: 61  FFSRWWREQSEDTRQKVKKLVKNGQLEFINGGWCMNDEATTHYEDIIDQMTLGHQFLKDT 120

Query: 161 FNK--TPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKRKEDKSLEVIWRG 218
           F +   P+ GWQIDPFGHS  QA L   ++GFD + F RIDYQD+A+R ++K +E IWRG
Sbjct: 121 FGECARPRVGWQIDPFGHSRTQASLFA-QMGFDGLFFGRIDYQDKAQRLKNKEMEFIWRG 179

Query: 219 SKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQWVNDFIDAALT 278
           S + G  + IFT     HY PP GF F++    +P+QD+P L+ YNV++ V+DF+  A  
Sbjct: 180 SPSLGPDADIFTGVLYNHYGPPPGFCFDILCGDEPIQDDPNLEDYNVDERVDDFVQYAKE 239

Query: 279 QANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK 317
           QA   R NHIM TMG DFQYQ AE WFK MDKLI YVNK
Sbjct: 240 QAQHYRTNHIMLTMGSDFQYQNAEMWFKNMDKLIKYVNK 278

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278
>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase Back     alignment and domain information
>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain Back     alignment and domain information
>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|219551 pfam07748, Glyco_hydro_38C, Glycosyl hydrolases family 38 C-terminal domain Back     alignment and domain information
>gnl|CDD|214875 smart00872, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|220157 pfam09261, Alpha-mann_mid, Alpha mannosidase, middle domain Back     alignment and domain information
>gnl|CDD|212101 cd10789, GH38N_AMII_ER_cytosolic, N-terminal catalytic domain of endoplasmic reticulum(ER)/cytosolic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins Back     alignment and domain information
>gnl|CDD|212123 cd10812, GH38N_AMII_ScAms1_like, N-terminal catalytic domain of yeast vacuolar alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212124 cd10813, GH38N_AMII_Man2C1, N-terminal catalytic domain of mammalian cytosolic alpha-mannosidase Man2C1 and similar proteins; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212125 cd10814, GH38N_AMII_SpGH38_like, N-terminal catalytic domain of SPGH38, a putative alpha-mannosidase of Streptococcus pyogenes, and its prokaryotic homologs; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212103 cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38) Back     alignment and domain information
>gnl|CDD|212105 cd10793, GH57N_TLGT_like, N-terminal catalytic domain of 4-alpha-glucanotransferase; glycoside hydrolase family 57 (GH57) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1005
KOG1959996 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PLN027011050 alpha-mannosidase 100.0
KOG19581129 consensus Glycosyl hydrolase, family 38 - alpha-ma 100.0
PRK09819875 alpha-mannosidase; Provisional 100.0
KOG43421078 consensus Alpha-mannosidase [Carbohydrate transpor 100.0
PF01074275 Glyco_hydro_38: Glycosyl hydrolases family 38 N-te 100.0
COG0383943 AMS1 Alpha-mannosidase [Carbohydrate transport and 100.0
PF07748457 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-t 100.0
PF0926180 Alpha-mann_mid: Alpha mannosidase, middle domain; 99.82
smart0087279 Alpha-mann_mid Alpha mannosidase, middle domain. M 99.79
COG0383943 AMS1 Alpha-mannosidase [Carbohydrate transport and 99.73
PF03065360 Glyco_hydro_57: Glycosyl hydrolase family 57; Inte 98.37
COG1543504 Uncharacterized conserved protein [Function unknow 96.02
PF01522123 Polysacc_deac_1: Polysaccharide deacetylase; Inter 95.64
COG1449615 Alpha-amylase/alpha-mannosidase [Carbohydrate tran 94.45
TIGR03212297 uraD_N-term-dom putative urate catabolism protein. 93.89
TIGR02764191 spore_ybaN_pdaB polysaccharide deacetylase family 93.63
TIGR02884224 spore_pdaA delta-lactam-biosynthetic de-N-acetylas 93.11
TIGR03006265 pepcterm_polyde polysaccharide deactylase family p 90.43
PRK14582671 pgaB outer membrane N-deacetylase; Provisional 89.89
TIGR02873268 spore_ylxY probable sporulation protein, polysacch 89.33
PRK14581672 hmsF outer membrane N-deacetylase; Provisional 86.08
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-235  Score=1960.16  Aligned_cols=950  Identities=50%  Similarity=0.841  Sum_probs=869.1

Q ss_pred             ecCCCCccCCceEEEEEeccccCCCchhhHHhhhccCCccchhhhHHHHHHHHHHHHHcCCCCcEEEechHHHHHHHhhc
Q 001850           30 YNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEALRRDPNRKFVFAEMAFFHRWWVGQ  109 (1005)
Q Consensus        30 ~~~~~~~~~~~~~VhlvpHSH~D~gWl~T~~ey~~~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~~~~~ww~~~  109 (1005)
                      |++|+...+++++||||||||+|+|||||+||||+|++|.||++.|++|||+||++|.+||+|||+++|++||.+||++|
T Consensus        26 y~t~~~~~~~~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~q  105 (996)
T KOG1959|consen   26 YNTCHKVVPNMINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQ  105 (996)
T ss_pred             cCCCccccCceeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHcCCeEEEceeeeeecccCCChHHHHHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHHHhhh
Q 001850          110 SPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDMIDQTTLGHHYIKQHFN--KTPKAGWQIDPFGHSAVQAYLLGVE  187 (1005)
Q Consensus       110 ~p~~~~~vk~lV~~GrlE~v~GgWv~~Dea~~~~es~I~ql~~G~~~l~~~fG--~~p~v~w~iD~FGhs~~~p~ll~~~  187 (1005)
                      ++++|+.||+||++|||||+||||||||||++||.|+||||+.||+||.++||  .+|++||||||||||+.||+||+ +
T Consensus       106 S~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dvIDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslfA-q  184 (996)
T KOG1959|consen  106 SETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDVIDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLFA-Q  184 (996)
T ss_pred             CHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHHHHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHHH-H
Confidence            99999999999999999999999999999999999999999999999999999  79999999999999999999996 9


Q ss_pred             cCCcEEEEeccCHHHHHhhhhcCCceeEEecCCCCCCCCceeEeecCCCCCCCCCCCcccCCCCCCccCCCCCCcccHHH
Q 001850          188 LGFDSVHFARIDYQDRAKRKEDKSLEVIWRGSKTFGSSSQIFTNAFPVHYSPPSGFHFELTDDFDPVQDNPLLDGYNVEQ  267 (1005)
Q Consensus       188 ~G~~~~~~~Ri~~~~k~~~~~~~~~eF~W~g~~~~~~~s~i~t~~~~~~Y~~p~~f~f~~~~~~~p~~~~~~~~~~nv~~  267 (1005)
                      |||++.+|+||||+||+.|..++.|||+|+|++++|++++|||++||.||++|+|||||..|.+.|++|+|.+.++||++
T Consensus       185 mGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~~~~iFTg~l~n~Y~~P~gfc~dv~c~d~Pi~D~~~~~d~NVke  264 (996)
T KOG1959|consen  185 MGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGSSSQIFTGALYNHYSPPPGFCFDVLCGDDPIIDGPRSYDYNVKE  264 (996)
T ss_pred             hCccchheeecchhhHHHHHhhccceEEeecCccccchhhhhhhccccCCCCCCCceeccccCCCCCCCCCCCCCccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEeecCCCCccchHHHHHHHHHHHHHHhc---CC-ceeEEEcChhhHHHHHHhcCCCCC
Q 001850          268 WVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQMDKLIHYVNK---GG-RVNALYSTPSLYTEAKNAANGPWP  343 (1005)
Q Consensus       268 ~~~~~~~~~~~~~~~~~t~~il~~~G~Df~~~~a~~~~~~~~~li~~~N~---~~-~~~i~~sT~~~Yf~~v~~~~~~~p  343 (1005)
                      |++.|++..+.++.+|+|||||+|||+||+|.+|..||+||||||+|+|+   .+ ++++.||||+||++++|+.+..||
T Consensus       265 rVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp  344 (996)
T KOG1959|consen  265 RVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWP  344 (996)
T ss_pred             HHHHHHHHHHHhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999999999994   34 899999999999999999999999


Q ss_pred             CccCCCccccccCCCceeeeeecccchhhHHHHhhhHHHHHHHHHHhhCCCC--CCCchHHHHHHHHhhccccCCCCCCc
Q 001850          344 LKTDDYFPYADRRNAYWTGFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKS--PGPTTSALGDALGIAQHHDAVTGTAK  421 (1005)
Q Consensus       344 ~~~gDf~py~~~~~~ywtG~yTSRp~~K~~~R~~e~~L~~ae~l~~l~~~~~--~~~~~~~l~~~l~~~QhHDaItGTs~  421 (1005)
                      +++.|||||++++++||||||||||.+|++.|+++++|++|+||+++++...  ..+.++.|+++|+++|||||||||+|
T Consensus       345 ~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTek  424 (996)
T KOG1959|consen  345 VKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSHYLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEK  424 (996)
T ss_pred             ccccccCcCCCCCCcceeeeccccHHHHHHHhhhhHHHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccch
Confidence            9999999999999999999999999999999999999999999999998654  55788999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcccccCcccccCCCCCCCCCCCCeEEEEEEcCCCce
Q 001850          422 QHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTFSQCPLLNISYCPPTEKGIPEGKNLVVAAYNPLGWN  501 (1005)
Q Consensus       422 ~~V~~dy~~rl~~a~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ln~s~~~~~~~~~~~~~~~~v~vfNpl~~~  501 (1005)
                      ++|.+||.++|..|+-.|+.+++++|+.|....        ...|++|.+||+|+||.+++   .++++.|++||||+|.
T Consensus       425 q~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--------~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~  493 (996)
T KOG1959|consen  425 QHVADDYARRLADGILGAEKLARDALRKLTNLP--------NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHT  493 (996)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--------CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcce
Confidence            999999999999999999999999999998643        34789999999999999863   3678999999999999


Q ss_pred             eeEEEEEEecCCcEEEECCCCCeEeEEEeecccccccccchhhhhccCCCCCCCCcEEEEEEEecCCCceEEEEEEecCC
Q 001850          502 RTDIIRIPVNDANLIVKDPLGNAINVQYVNLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAG  581 (1005)
Q Consensus       502 r~~~V~i~v~~~~v~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vP~lG~~~y~i~~~~~  581 (1005)
                      ++++|+|||..+++.|+|+.|++|++|++|.......+.          .......++|+|.|.|||+|+++|.|+...+
T Consensus       494 ~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~al~----------~~~~~~~~eLvf~asvpplg~aty~i~k~~~  563 (996)
T KOG1959|consen  494 VTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLALE----------SRNNDTKHELVFKASVPPLGIATYFIKKVAS  563 (996)
T ss_pred             eeeEEEEeccCCCeEEECCCCCCcccceeccchhhhhhh----------ccccCCCceEEEEEEecCccceEEEEeecCc
Confidence            999999999999999999999999999999976544332          1234467999999999999999999996544


Q ss_pred             cccccccceeccCCCCCCceEecCCeEEEEEEcCCCcEEEEEecCCCeEEeeeEEEEEeeccC---CCCCCCcceEecCC
Q 001850          582 KVKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSFLWYGSMV---DTQSSGAYIFRPNG  658 (1005)
Q Consensus       582 ~~~~~~~~~~~~~~~~~~~~~ieN~~~~v~~d~~~G~l~si~dk~~g~~~~~~~~f~~Y~~~~---~~~~sgAY~f~P~~  658 (1005)
                      ......+..............|+|+++++.||.++|.++++....+|.+..+.|.|.+|.++.   +.+.||||+|+| +
T Consensus       564 ~~~~~~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~  642 (996)
T KOG1959|consen  564 TERGSASHVRNIKKRESNATEVGNSHLKLVFDNDTGLLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-G  642 (996)
T ss_pred             ccccccccccccccccCcceEeccceEEEEEcCCCCceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-C
Confidence            322111111111112233489999999999998899999999888999999999999999766   247899999999 5


Q ss_pred             CcccccC-CCccEEEEecCceEEEEEEecceEEEEEEEeecCCceeEEEEECCeeccCCCCcEEEEEEEeeecCCcEEEE
Q 001850          659 AQPNVVS-RSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYT  737 (1005)
Q Consensus       659 ~~~~~~~-~~~~i~v~~Gpl~~~v~~~~~~~i~q~vrL~~~~~~ie~e~~v~~ip~~~~~~~e~~~rf~t~i~s~~~fyT  737 (1005)
                      ...+++. ....++|+.|||+.||++.++.|++|.+|+|+|.+++|+||.|||||++|..|||+++||+|+|.|++.|||
T Consensus       643 ~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQviRvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYT  722 (996)
T KOG1959|consen  643 QADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVIRVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYT  722 (996)
T ss_pred             CCCccccccceEEEEecCchHHHHHHHHHHHHhheeEecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEe
Confidence            4444443 357889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcceeecccccccccccCCCCCcccceEeecceEEEeeCCceEEEEecCCcceeeccCcEEEEEEEeeeccCCCCcc
Q 001850          738 DSNGRDFLKRVRDYRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGV  817 (1005)
Q Consensus       738 DsnG~~~ikR~~~~r~~w~~~~~~pv~~NyYPv~s~~~I~D~~~~ltvltdr~~G~~sl~~G~iElmL~Rr~~~DD~rGv  817 (1005)
                      ||||+||+||.+++|++|....++|++||||||++.|||+|++.+|+|||||+|||+|++||+||||||||++.||+|||
T Consensus       723 DSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv  802 (996)
T KOG1959|consen  723 DSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSRIYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRGV  802 (996)
T ss_pred             cCcHHHHHHHHhcccCCCccccCccccccccccceeeEEecCCceEEEEeecccCCccccCCeEEEEeeehhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccCCCCeeEeeeEEEeccccCccc-hhcccchhhhcccceeeeeccccccccccccCccccCccCCCCCC
Q 001850          818 GEALDESVCVRDNCEGLTVRGNYYLSVNQLGAGA-RWRRTTGQEVYSPLLLAFTQEKLETWTESHLTKSTAMESDYSLPL  896 (1005)
Q Consensus       818 ge~l~e~~~~~~~~~gl~~~~~~~l~~~~~~~~~-~~~r~~~~~l~~p~~~~f~~~~~~~~~~~~~~~~~~l~~~~~lp~  896 (1005)
                      ||+|||+.|+   ..||.+||+|++.|+..+..+ .++|..+++++.|.+.+|++.....+........+.+..++.||.
T Consensus       803 ~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP~  879 (996)
T KOG1959|consen  803 GEALNETVYG---HAGLIARGKLYVLLDKAGDGATGWRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLPQ  879 (996)
T ss_pred             chhccccccc---ccceEEeeeEEEEEecccccchhhhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCCc
Confidence            9999999986   279999999999999888775 778999999999999999877654444333333333444568999


Q ss_pred             cceEEEeeecCCCcEEEEEecccccCCCCCCceeeeeehhhhccccccceeeecccccccchhhccceeeeee-CC---C
Q 001850          897 NVALITLEELDDGSVLLRLAHLYEEGEDAEYSTLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVE-GE---S  972 (1005)
Q Consensus       897 nv~lltl~~~~~~~illRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~i~~i~EtsLt~~~~~~~~~r~~w~~~-~~---~  972 (1005)
                      +||||||++|+++.+||||+|+|++|||+++|++++|+|.+||..+++..|+||||+||+++++|+|++|..+ .+   .
T Consensus       880 ~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvsfnl~~lf~~~~i~~i~EttL~gN~~ls~mkr~k~~~~~~G~~~~  959 (996)
T KOG1959|consen  880 SVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVSFNLRKLFSALDIVEIRETTLDGNQPLSDMKRFKFHWDVSGEKPS  959 (996)
T ss_pred             ceeeeecccCCCCceEeeehhhhhcccccccCcceEEEhHHhhcccCeeEEEEeeccCccChhhhhhhccccCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999888776 33   1


Q ss_pred             CCcCCCCCCCCCCC-CCceEEecCCceeEEEEEC
Q 001850          973 GKTHSPVRGGPLDA-STLVVELGPMEIRTFLLKF 1005 (1005)
Q Consensus       973 ~~~~~~~~~~~~~~-~~~~i~l~PmeIrTf~v~~ 1005 (1005)
                      +....+.+..|+++ +.+.|+|.|||||||+|++
T Consensus       960 ~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~  993 (996)
T KOG1959|consen  960 GVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKF  993 (996)
T ss_pred             CccccccCCCCCCcccceEEEEeccEEEEEEEEE
Confidence            22334445566664 5689999999999999974

>PLN02701 alpha-mannosidase Back     alignment and domain information
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09819 alpha-mannosidase; Provisional Back     alignment and domain information
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold Back     alignment and domain information
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain Back     alignment and domain information
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG1543 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase Back     alignment and domain information
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03212 uraD_N-term-dom putative urate catabolism protein Back     alignment and domain information
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB Back     alignment and domain information
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase Back     alignment and domain information
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK14582 pgaB outer membrane N-deacetylase; Provisional Back     alignment and domain information
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family Back     alignment and domain information
>PRK14581 hmsF outer membrane N-deacetylase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1005
1hxk_A1015 Golgi Alpha-Mannosidase Ii In Complex With Deoxyman 4e-77
1ps3_A1045 Golgi Alpha-mannosidase Ii In Complex With Kifunens 7e-77
3dx3_A1045 Golgi Alpha-Mannosidase Ii In Complex With Mannosta 8e-77
1qwn_A1045 Golgi Alpha-Mannosidase Ii Covalent Intermediate Co 9e-77
1qwu_A1045 Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit 3e-76
3cv5_A1045 Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu 7e-76
1hty_A1015 Golgi Alpha-Mannosidase Ii Length = 1015 1e-73
1o7d_A298 The Structure Of The Bovine Lysosomal A-Mannosidase 3e-73
1o7d_D282 The Structure Of The Bovine Lysosomal A-Mannosidase 5e-60
1o7d_B84 The Structure Of The Bovine Lysosomal A-Mannosidase 8e-15
1o7d_C159 The Structure Of The Bovine Lysosomal A-Mannosidase 8e-14
1o7d_E126 The Structure Of The Bovine Lysosomal A-Mannosidase 1e-09
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015 Back     alignment and structure 
Iteration: 1

 Score =  286 bits (732), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 237/851 (27%), Positives = 388/851 (45%), Gaps = 94/851 (11%)
Query: 26  DYVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEA 85
           D +KYN        KL V +V HSH+D GW++T ++YY            +++L + +  
Sbjct: 41  DPLKYN-----AHHKLKVFVVPHSHNDPGWIQTFEEYYQHD--------TKHILSNALRH 87
Query: 86  LRRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVD 145
           L  +P  KF++AE+++F R++       + Q++ +V   QLEFV GGW M DEA +H+ +
Sbjct: 88  LHDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRN 147
Query: 146 MIDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAK 205
           ++ Q T G  ++KQ  N TP A W IDPFGHS    Y+L  + GF ++   R  Y  + +
Sbjct: 148 VLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQ-KSGFKNMLIQRTHYSVKKE 206
Query: 206 RKEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD-- 252
             + + LE +WR        + +FT+  P + Y  P            F F+    F   
Sbjct: 207 LAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLS 266
Query: 253 -PVQDNP-LLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQ--- 307
            P +  P  +   NV    +  +D    +A + R N ++  +GDDF+++    W  Q   
Sbjct: 267 CPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVN 326
Query: 308 MDKLIHYVNKGGRVN--ALYSTPSLY----TEAKNAANGPWPLKTDDYFPYADRRNAYWT 361
            ++L  ++N     N  A + T   Y     +A+ A    +P  + D+F YADR + YW+
Sbjct: 327 YERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWS 386
Query: 362 GFFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTG 418
           G++TSRP  K   RVL  +  A+  L               L  A   L + QHHD +TG
Sbjct: 387 GYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITG 446
Query: 419 TAKQHTTNDYAKRLAIGXXXXXXXXXXXXXXXXXRKSGHQCTKPASTFSQCPLLNISY-- 476
           TAK H   DY +R+                    + S      P  +FS   L +  +  
Sbjct: 447 TAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPS---IYSPDFSFSYFTLDDSRWPG 503
Query: 477 --CPPTEKGIPEGKNLV----VAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYV 530
                +   I  G++++    V  +N L   R  ++   V+   + V D   N +  Q  
Sbjct: 504 SGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQ-- 561
Query: 531 NLDNVTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFI----------SRAA 580
            +  V S      T+    Q S    +Y ++F+  VPP+G  TY +          S A+
Sbjct: 562 -VSPVWSWHHDTLTKTIHPQGS--TTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYAS 618
Query: 581 GKVKRRKGFFLAADS---------PQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDV 631
             + R+    L             P++ ++ VG G   ++FS   G LK +  ++    V
Sbjct: 619 NLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGP-TLAFSE-QGLLKSIQLTQDSPHV 676
Query: 632 PIQQSFLWYGSMVDTQSSGAYIFRPNG-AQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIY 690
           P+   FL YG       SGAY+F PNG A P  + + V + + +G +   V     S ++
Sbjct: 677 PVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPV-VLVTKGKLESSVSVGLPSVVH 735
Query: 691 QVTRLYIDKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRD 750
           Q     I +  A     +  I + D+   E++ R+  ++ +  +FYTD NG  F+KR R 
Sbjct: 736 QT----IMRGGAPEIRNLVDIGSLDNT--EIVMRLETHIDSGDIFYTDLNGLQFIKRRRL 789
Query: 751 YRADWSLQVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRML 810
            +         P+  NYYP+  G+FI D  +  ++L  +  GG+S+  G++EIM  RR+ 
Sbjct: 790 DKL--------PLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLA 841
Query: 811 ADDGRGVGEAL 821
           +DD RG+G+ +
Sbjct: 842 SDDERGLGQGV 852
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045 Back     alignment and structure
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045 Back     alignment and structure
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045 Back     alignment and structure
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045 Back     alignment and structure
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045 Back     alignment and structure
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015 Back     alignment and structure
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298 Back     alignment and structure
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 282 Back     alignment and structure
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 84 Back     alignment and structure
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 159 Back     alignment and structure
>pdb|1O7D|E Chain E, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 126 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1005
3bvx_A1045 Alpha-mannosidase 2; family 38 glycoysl hydrolase, 0.0
1o7d_A298 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-118
3lvt_A899 Glycosyl hydrolase, family 38; PSI, MCSG, structur 1e-100
1o7d_D282 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-100
2wyh_A923 Alpha-mannosidase; hydrolase, glycosidase, glycosi 2e-96
1o7d_C159 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 2e-42
1o7d_E126 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 4e-36
1o7d_B84 Lysosomal alpha-mannosidase; hydrolase, glycosyl h 1e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1k1x_A659 4-alpha-glucanotransferase; 2.40A {Thermococcus li 2e-09
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045 Back     alignment and structure
 Score =  776 bits (2004), Expect = 0.0
 Identities = 243/1038 (23%), Positives = 421/1038 (40%), Gaps = 120/1038 (11%)

Query: 27   YVKYNTGAGVVAGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQSACVENVLDSVVEAL 86
             +KY+        KL V +V HSH+D GW++T ++YY            +++L + +  L
Sbjct: 67   NIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEEYYQH--------DTKHILSNALRHL 118

Query: 87   RRDPNRKFVFAEMAFFHRWWVGQSPEIQEQVRKLVDASQLEFVNGGWCMHDEATTHYVDM 146
              +P  KF++AE+++F R++       + Q++ +V   QLEFV GGW M DEA +H+ ++
Sbjct: 119  HDNPEMKFIWAEISYFARFYHDLGENKKLQMKSIVKNGQLEFVTGGWVMPDEANSHWRNV 178

Query: 147  IDQTTLGHHYIKQHFNKTPKAGWQIDPFGHSAVQAYLLGVELGFDSVHFARIDYQDRAKR 206
            + Q T G  ++KQ  N TP A W I PFGHS    Y+L  + GF ++   R  Y  + + 
Sbjct: 179  LLQLTEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYIL-QKSGFKNMLIQRTHYSVKKEL 237

Query: 207  KEDKSLEVIWRGSKTFGSSSQIFTNAFPVH-YSPP----------SGFHFELTDDFD--- 252
             + + LE +WR        + +FT+  P + Y  P            F F+    F    
Sbjct: 238  AQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGLSC 297

Query: 253  -PVQDNPLLDGYNVEQWVNDFIDAALTQANVTRDNHIMWTMGDDFQYQYAESWFKQ---M 308
                    +   NV    +  +D    +A + R N ++  +GDDF+++    W  Q    
Sbjct: 298  PWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNY 357

Query: 309  DKLIHYVNKGGR--VNALYSTPSLYTEA----KNAANGPWPLKTDDYFPYADRRNAYWTG 362
            ++L  ++N      V A + T   Y +A    + A    +P  + D+F YADR + YW+G
Sbjct: 358  ERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSG 417

Query: 363  FFTSRPALKGYVRVLSGFYLASRQLEFLAGKKSPGPTTSALGDA---LGIAQHHDAVTGT 419
            ++TSRP  K   RVL  +  A+  L               L  A   L + QHHD +TGT
Sbjct: 418  YYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEERLEQARRELSLFQHHDGITGT 477

Query: 420  AKQHTTNDYAKRLAIGASEAEVVVSSSLSCLASRKSGHQCTKPASTF----SQCPLLNIS 475
            AK H   DY +R+       ++V+  S+  L ++ S +      S F    S+ P   + 
Sbjct: 478  AKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVE 537

Query: 476  YCPPTEK-GIPEGKNLVVAAYNPLGWNRTDIIRIPVNDANLIVKDPLGNAINVQYVNLDN 534
                T   G     +  V  +N L   R  ++   V+   + V D   N +  Q   + +
Sbjct: 538  DSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWS 597

Query: 535  VTSNLRKFYTEAYLGQSSKRVPRYWLLFQVTVPPLGWNTYFISRAAGK------------ 582
               +                  +Y ++F+  VPP+G  TY ++ +  K            
Sbjct: 598  WHHDTLTKTIHPQGST-----TKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLL 652

Query: 583  -----VKRRKGFFLAADSPQDKTVEVGPGNLKMSFSRTTGQLKRMYNSRTGVDVPIQQSF 637
                       +         + + +  GN         G LK +  ++    VP+   F
Sbjct: 653  RKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSEQGLLKSIQLTQDSPHVPVHFKF 712

Query: 638  LWYGSMVDTQSSGAYIFRPNGAQPNVVSRSVPIKIIRGPMVDEVHQQFNSWIYQVTRLYI 697
            L YG       SGAY+F PNG    V      + + +G +   V     S ++Q   +  
Sbjct: 713  LKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGLPSVVHQT-IMRG 771

Query: 698  DKEHAEVEYTIGPIPTEDSVGKEVISRMTANMVTEKVFYTDSNGRDFLKRVRDYRADWSL 757
                      IG +        E++ R+  ++ +  +FYTD NG  F+KR R  +     
Sbjct: 772  GAPEIRNLVDIGSLD-----NTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDK----- 821

Query: 758  QVNEPVAGNYYPLNLGIFITDKKSEFSVLVDRATGGASIKDGQVEIMLHRRMLADDGRGV 817
                P+  NYYP+  G+FI D  +  ++L  +  GG+S+  G++EIM  RR+ +DD RG+
Sbjct: 822  ---LPLQANYYPIPSGMFIEDANTRLTLLTGQPLGGSSLASGELEIMQDRRLASDDERGL 878

Query: 818  GEALDESVCVRDNCEGLTVRGNYYLSVNQL---GAGARWRRTTGQEVYSPLLLAFTQEKL 874
            G+ + ++  V      +  + N  +  ++L   G          Q +  PL      E  
Sbjct: 879  GQGVLDNKPVLHIYRLVLEKVNNCVRPSKLHPAGYLTSAAHKASQSLLDPLDKFIFAE-- 936

Query: 875  ETWTESHLTKSTAMESDYSLPLNVALITLEELDDGS-------VLLRLAHLYEEGEDAEY 927
              W  +            S   ++ +  +  L   S        +L   +L + G   E+
Sbjct: 937  NEWIGAQGQFGG---DHPSAREDLDVSVMRRLTKSSAKTQRVGYVLHRTNLMQCGTPEEH 993

Query: 928  STLAKVELKKMFKGKSIKQLKEMSLSANQEKLEMKKMTWKVEGESGKTHSPVRGGPLDAS 987
            +   K+++  +    ++ + +  +L+  Q    +  M                       
Sbjct: 994  T--QKLDVCHLL--PNVARCERTTLTFLQNLEHLDGMV---------------------- 1027

Query: 988  TLVVELGPMEIRTFLLKF 1005
                E+ PME   ++   
Sbjct: 1028 --APEVCPMETAAYVSSH 1043
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298 Back     alignment and structure
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899 Back     alignment and structure
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Length = 282 Back     alignment and structure
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923 Back     alignment and structure
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6 Length = 159 Back     alignment and structure
>1o7d_E Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6 Length = 126 Back     alignment and structure
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1 Length = 84 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A* Length = 659 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1005
g1o7d.2490 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosoma 1e-145
d3bvua2522 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II { 1e-127
g1o7d.3330 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno 1e-116
d3bvua3381 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru 1e-108
d1k1xa3310 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te 5e-44
d3bvua1111 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fr 4e-27
g1o7d.195 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mann 2e-24
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 522 Back     information, alignment and structure
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381 Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310 Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1005
g1o7d.2490 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 100.0
d3bvua3381 Golgi alpha-mannosidase II {Fruit fly (Drosophila 100.0
d3bvua2522 Golgi alpha-mannosidase II {Fruit fly (Drosophila 100.0
g1o7d.3330 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 100.0
d1k1xa3310 4-alpha-glucanotransferase, N-terminal domain {Arc 100.0
d3bvua1111 Golgi alpha-mannosidase II {Fruit fly (Drosophila 99.93
g1o7d.195 Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax 99.92
d2b5dx2404 Alpha-amylase AmyC {Thermotoga maritima [TaxId: 23 99.28
d1ufaa2412 Hypothetical protein TT1467, N-terminal domain {Th 99.04
d1ny1a_235 Probable polysaccharide deacetylase PdaA {Bacillus 92.73
d2j13a1235 Putative polysaccharide deacetylase BA0424 {Bacill 92.67
d2cc0a1192 Acetyl-xylan esterase {Streptomyces lividans [TaxI 92.14
d2c1ia1196 Peptidoglycan GlcNAc deacetylase C-terminal domain 89.96
d2iw0a1220 Chitin deacetylase {Bean anthracnose fungus (Colle 85.27
d1z7aa1301 Hypothetical protein PA1517 {Pseudomonas aeruginos 83.67
d2c71a1204 Xylanase XynA C-terminal domain {Clostridium therm 83.46
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d3bvua2 b.30.5.6 (A:523-1044) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d3bvua1 a.8.3.1 (A:412-522) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase BA0424 {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose fungus (Colletotrichum lindemuthianum) [TaxId: 290576]} Back     information, alignment and structure
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure