Citrus Sinensis ID: 001851

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000----
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR
cccccccEEcccccccccEEEEEEEccEEEEEEccccEEEEEcccccccccccccccccccccHHHHHHcccccccccEEEEEEEcccEEEEEEccEEEEEcccccHHHHHHcccccEEEEEcccccEEEEEEEcEEEEEEEcccccEEEEEEEccccccEEEcccccEEEEEEcccEEEEEccccccccccccccccccEEEEccccEEEEEEccEEEEEEccccccccccEEcccccccEEEcccEEEEEccccEEEEEcccccEEEEEEEEccccccccccccEEEEccccEEEEEcccHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHcHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccHHHHHccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccEEEEccccEEEEEccccccccccccccccccccc
ccccccccEEHHcccccEEEEEEEcccEEEEEccccEEEEEEEccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHccEEEEEcccEEEEEcccccccHHHHHccccEEEEEcccccEEEEEEEEEEEEEEEccccccEEEEEEEcccccEEEEEcccEEEEEEcccEEEEEEccccEEEccccccccccEEEEccccEEEEEcccEEEEEEcccccccccccccccccHEEEEcccEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccEEEEEcccEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHcHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHcHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHcHHcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccccccccEEEEEccccEEEEEEEccccccccccccccccccc
mvhnafdslelisncspkiDAVASYGLKILLGcsdgslkiyspgssesdrsppsdyqsLRKESYELERtisgfskkpilSMEVLASRQLLLSLSEsiafhrlpnleTIAVLTKAkganvyswddrrgfLCFARQKRVcifrhdggrgfvevkdfgvpdtvksmswcgeNICIAIRKGYMILNatngalsevfpsgrigppLVVSLLSGelllgkenigvfvdqngkllqadricwseapIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSifglfpvplgaQIVQLTASGDFEEALALCkllppedasLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALslypsivlpkttvvpeperlldissdapslsrgssgmsddmessppaqlseldenatlkskkmSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAvgdnftshdstrfkksskgrgtipmysGAREMAAILDTALLQALLLTGQSSAALELLkglnycdvKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEesksnqsqdehtqkfnpeSIIEYLkplcgtdpmLVLEFSMLVLescptqtielFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQqkwdekayspTRKKLLSALESisgynpevllkrlpadaLYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYesiahqpsgkssgnIYLTLLQIYlnprrttkNFEKQITNLVSsqnttipkagsVTAVkvkggrttkkiasiegaedmrmspsstdsgrsdgdaeefseegdstiMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRqsenlqvkdELYNQRKTVVKITSDsmcslcskkigtsvfavypngktIVHFVCFrdsqsmkavakgsplrkr
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIyspgssesdrsppsdYQSLRKESYELERTisgfskkpilSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIfrhdggrgfvevkdfgvpdtvksmsWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLpkttvvpeperlldissdapslsRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKAtaegteevvldavgdnftshdstrfkksskgrgtiPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEesksnqsqdehtqkfnPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIahqpsgkssgnIYLTLLQIYLNPRRTTKNFEKQITNLvssqnttipkagsvtavkvkggrttkkiasiegaedmrmspsstdsgrsdGDAEEfseegdstiMIDQVLDLLSQRWDRINGAQalkllpretKLQNLLPFLEPLLRKSSEAHRNLSVIkslrqsenlqvkdelynqRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVcfrdsqsmkavakgsplrkr
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGpplvvsllsgelllgkeNIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPslsrgssgmsddmessPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMaaildtallqallltgqssaalELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKlqnllpflepllRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR
*******SLELISNCSPKIDAVASYGLKILLGCSDGSLKIY*******************************F*KKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVV*****************************************************LMALIKFLQKK**SII*********EVVLDAV***********************MYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLH**********************SIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQP**KSSGNIYLTLLQIYLNPRRTTKNFEKQITNLV*************************************************************TIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLL***********************VKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFR*****************
*VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSP**************************I*GFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEAL*****************EGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPER**************************************LKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSH*********************REMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESK***S*DEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLD*****************PTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIA******SSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPK*****************IASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFV********************
MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIY******************RKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSD**********************LSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSH************GTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVE*************KFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGA*************************GDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQS*************
**HNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSS************LRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKT********************************************ATLKSKKMSHNTLMALIKFLQKKRSSIIEKATA*******************************TIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES******DEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQ****SSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1004 2.2.26 [Sep-21-2011]
Q8R5L3886 Vam6/Vps39-like protein O yes no 0.846 0.959 0.273 2e-83
Q96JC1886 Vam6/Vps39-like protein O yes no 0.843 0.955 0.273 6e-81
Q3UR70860 Transforming growth facto no no 0.739 0.862 0.248 2e-29
A4IG72863 Transforming growth facto no no 0.619 0.720 0.259 8e-28
Q8WUH2860 Transforming growth facto no no 0.655 0.765 0.260 3e-27
A7MB11859 Transforming growth facto no no 0.541 0.633 0.256 2e-25
O13955905 Vacuolar morphogenesis pr yes no 0.707 0.784 0.222 2e-21
Q074681049 Vacuolar morphogenesis pr yes no 0.248 0.237 0.245 1e-08
Q54EH31031 GTPase-activating protein no no 0.149 0.145 0.236 3e-06
Q6DT371551 Serine/threonine-protein no no 0.203 0.131 0.237 4e-05
>sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1 Back     alignment and function desciption
 Score =  311 bits (796), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 280/1023 (27%), Positives = 492/1023 (48%), Gaps = 173/1023 (16%)

Query: 2   VHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYS--PGSSESDRSPPSDYQSL 59
           +H+AF+ + ++     +ID +A++   +L+G   G L +Y        +D + P      
Sbjct: 1   MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN 60

Query: 60  RKESYELERTISGFSKKPILSMEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGAN 118
           R E   LE++   FSKK I  + V++  ++L+SL E+ I  H L   + I  ++KAKGA+
Sbjct: 61  RFEV-TLEKSNKNFSKK-IQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGAS 118

Query: 119 VYSWDDRRG-------FLCFARQKRVCIFRHDGGRGFVEVK-DFGVPDTVKSMSWCGENI 170
           +++ D +          +C A +K++ ++     R F E++ DF VPD  KSM+WC  +I
Sbjct: 119 LFTCDLQHTETGEEVLRMCVAVRKKLQLYFWKD-REFHELQGDFSVPDVPKSMAWCENSI 177

Query: 171 CIAIRKGYMILNAT-NGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQ 229
           C+  ++ Y ++     G++ E+FP+G+   PLV  L  G++ +G++++ V +++ G   Q
Sbjct: 178 CVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQ 237

Query: 230 ADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIP-SSNAVV 288
              + W++ P+A+  Q PY +A+LPR VE+R+L  P  L+Q+I LQ  R +    SN + 
Sbjct: 238 KCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTLE-PRLLVQSIELQRPRFITSGGSNIIY 296

Query: 289 VALENSIFGLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIR--FA 346
           VA  + ++ L PVP+  QI QL     FE AL L ++   +D S    ++   HI+  +A
Sbjct: 297 VASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEM---KDDSDSEKQQQIHHIKNLYA 353

Query: 347 HYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRG 406
             LF    ++E+M+ F     D T+ + LYP + LP      +  + L   +  P+LS  
Sbjct: 354 FNLFCQKRFDESMQVFAKLGTDPTHVMGLYPDL-LPT-----DYRKQLQYPNPLPTLSG- 406

Query: 407 SSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEE 466
                           +EL++         +H   +ALI +L +KRS +++K        
Sbjct: 407 ----------------AELEK---------AH---LALIDYLTQKRSQLVKKL------- 431

Query: 467 VVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALE 526
                   N + H S+    S    GT P     +++  I+DT LL+  L T  +  A  
Sbjct: 432 --------NDSDHQSS---TSPLMEGT-PTIKSKKKLLQIIDTTLLKCYLHTNVALVAPL 479

Query: 527 LLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEES-KSNQSQDEH 585
           L    N+C ++  E +L+K + Y+ L+ LY+    H +AL++   LV++S K+N     H
Sbjct: 480 LRLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQV---LVDQSKKANSPLKGH 536

Query: 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSG-----NIPADLVNS 640
                 E  ++YL+ L   +  L+  +S+ VL   P   +++F        ++P D V +
Sbjct: 537 ------ERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLN 590

Query: 641 YLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLDWYSDL---------SAQ 691
           +L +   ++   YLE ++ + E +      N ++Q+Y  +V     D             
Sbjct: 591 FLIENFKALAIPYLEHIIHVWEET-GSQFHNCLIQLYCEKVQSLMKDYLLSLPTGKSPVP 649

Query: 692 QKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLY 751
              +       R+KLL  LE  S Y+P  L+   P D L EERA+LLG+M +HE AL +Y
Sbjct: 650 AGEEGGELGEYRQKLLMFLEISSHYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIY 709

Query: 752 VHKLCVPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVS 811
           VH L   ++A  YC + Y+      + + + ++YL+LL++YL+P                
Sbjct: 710 VHVLKDTKMAKEYCHKHYDQ-----NKEGNKDVYLSLLRMYLSP---------------- 748

Query: 812 SQNTTIPKAGSVTAVKVKGGRTTKKIASIEGA-EDMRMSPSSTDSGRSDGDAEEFSEEGD 870
                 P    +  +K++     +  A+++ A + + +  S  D+ ++       ++  D
Sbjct: 749 ------PSIHCLGPIKLE---LLEPQANLQAALQVLELHYSKLDTTKAINLLPANTQIND 799

Query: 871 STIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKS 930
             I +++VL+  +Q+  R N             L+NLL                      
Sbjct: 800 IRIFLEKVLEENAQK-KRFNQV-----------LKNLL---------------------- 825

Query: 931 LRQSENLQVKDE--LYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988
              +E L+V++E  L+ Q K +  IT + +C +C KKIG S FA YPNG  +VH+ C ++
Sbjct: 826 --HAEFLRVQEERILHQQVKCI--ITEEKVCMVCKKKIGNSAFARYPNG-VVVHYFCSKE 880

Query: 989 SQS 991
             S
Sbjct: 881 VNS 883
May play a role in clustering and fusion of late endosomes and lysosomes.
Mus musculus (taxid: 10090)
>sp|Q96JC1|VPS39_HUMAN Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2 Back     alignment and function description
>sp|Q3UR70|TGFA1_MOUSE Transforming growth factor-beta receptor-associated protein 1 OS=Mus musculus GN=Tgfbrap1 PE=2 SV=1 Back     alignment and function description
>sp|A4IG72|TGFA1_DANRE Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1 Back     alignment and function description
>sp|Q8WUH2|TGFA1_HUMAN Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1 Back     alignment and function description
>sp|A7MB11|TGFA1_BOVIN Transforming growth factor-beta receptor-associated protein 1 OS=Bos taurus GN=TGFBRAP1 PE=2 SV=1 Back     alignment and function description
>sp|O13955|VAM6_SCHPO Vacuolar morphogenesis protein 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vam6 PE=3 SV=1 Back     alignment and function description
>sp|Q07468|VAM6_YEAST Vacuolar morphogenesis protein 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAM6 PE=1 SV=1 Back     alignment and function description
>sp|Q54EH3|Y1510_DICDI GTPase-activating protein DDB_G0291510 OS=Dictyostelium discoideum GN=DDB_G0291510 PE=4 SV=1 Back     alignment and function description
>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma OS=Homo sapiens GN=CDC42BPG PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1004
2241342921008 predicted protein [Populus trichocarpa] 1.0 0.996 0.824 0.0
2254307661006 PREDICTED: vam6/Vps39-like protein [Viti 1.0 0.998 0.819 0.0
255561166972 conserved hypothetical protein [Ricinus 0.964 0.995 0.808 0.0
449462842996 PREDICTED: vam6/Vps39-like protein-like 0.987 0.994 0.782 0.0
449517638996 PREDICTED: LOW QUALITY PROTEIN: vam6/Vps 0.987 0.994 0.779 0.0
297735158924 unnamed protein product [Vitis vinifera] 0.920 1.0 0.838 0.0
356496767989 PREDICTED: vam6/Vps39-like protein-like 0.983 0.997 0.760 0.0
2977982381000 hypothetical protein ARALYDRAFT_490975 [ 0.994 0.998 0.743 0.0
2402561901000 Vacuolar sorting protein 39 [Arabidopsis 0.994 0.998 0.739 0.0
356538190989 PREDICTED: vam6/Vps39-like protein-like 0.984 0.998 0.754 0.0
>gi|224134292|ref|XP_002327802.1| predicted protein [Populus trichocarpa] gi|222836887|gb|EEE75280.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1704 bits (4414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 831/1008 (82%), Positives = 922/1008 (91%), Gaps = 4/1008 (0%)

Query: 1    MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQS-- 58
            MVHNA+DS EL++NC  KIDA+ SYG K+L+ CSDG+L+IY+P S+ SD+SPPSDY +  
Sbjct: 1    MVHNAYDSFELLTNCPNKIDAIESYGSKLLIACSDGALRIYAPVSAISDKSPPSDYHNHG 60

Query: 59   --LRKESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKG 116
              LRKE Y LERT++GFSKKP+LSM+VLASR+LLLSLSESIAFHRLPNLETIAVLTKAKG
Sbjct: 61   DQLRKEPYSLERTVNGFSKKPMLSMKVLASRELLLSLSESIAFHRLPNLETIAVLTKAKG 120

Query: 117  ANVYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRK 176
            ANV+ WDD+RGFLCFARQKRVCIFRHDGGRGFVEVKDFGV DTVKSMSWCGENIC+ IRK
Sbjct: 121  ANVFDWDDKRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVSDTVKSMSWCGENICLGIRK 180

Query: 177  GYMILNATNGALSEVFPSGRIGPPLVVSLLSGELLLGKENIGVFVDQNGKLLQADRICWS 236
             Y ILN+TNGALS+VFPSGR+ PPLVVSL SGELLLGK+NIGVFVDQNGK LQA++ICWS
Sbjct: 181  EYWILNSTNGALSQVFPSGRLAPPLVVSLPSGELLLGKDNIGVFVDQNGKHLQAEKICWS 240

Query: 237  EAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIF 296
            EAP  V+IQK YAI+LLPRR+E+RSLRVPY+LIQ  VLQNVRHLI S+NA++VAL NS+ 
Sbjct: 241  EAPSLVVIQKSYAISLLPRRIEIRSLRVPYSLIQAFVLQNVRHLIESNNAIIVALSNSVR 300

Query: 297  GLFPVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYE 356
             LFPVPLGAQIVQLTASG+FEEALALCKLLPPED++LRAAKEGSIHIR+AHYLFD GSYE
Sbjct: 301  ALFPVPLGAQIVQLTASGNFEEALALCKLLPPEDSNLRAAKEGSIHIRYAHYLFDNGSYE 360

Query: 357  EAMEHFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPSLSRGSSGMSDDMES 416
            EAMEHFLASQVDI Y LSLYPSIVLPKT++VPE E+L+DIS DAP LSRGS G+SD ME 
Sbjct: 361  EAMEHFLASQVDIIYVLSLYPSIVLPKTSLVPEREKLIDISQDAPYLSRGSCGLSDIMEP 420

Query: 417  SPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNF 476
            SPP  LS+ DE++ L+SKKMSHNTLMALIK+LQK+R  I+EKATAEGT+EVVLDAVGDN+
Sbjct: 421  SPPIHLSDFDEHSALESKKMSHNTLMALIKYLQKRRFGIVEKATAEGTDEVVLDAVGDNY 480

Query: 477  TSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLNYCDV 536
              +DS RFKKS+KGRG I + SGAREMAAILDTALLQALLLTGQ+SAALELLKGLNYCD+
Sbjct: 481  GPYDSNRFKKSNKGRGNIAINSGAREMAAILDTALLQALLLTGQTSAALELLKGLNYCDL 540

Query: 537  KICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIE 596
            KICEEILQK NHYTALLELYK NA HREALKLLH+LVEESKSNQS+ E   KF PESI+E
Sbjct: 541  KICEEILQKWNHYTALLELYKCNAMHREALKLLHQLVEESKSNQSKPELNPKFKPESIVE 600

Query: 597  YLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLEL 656
            YLKPLC TDPMLVLEFSMLVLESCPTQTIEL LSGNIPADLVNSYLKQ++PSMQGRYLEL
Sbjct: 601  YLKPLCWTDPMLVLEFSMLVLESCPTQTIELLLSGNIPADLVNSYLKQHAPSMQGRYLEL 660

Query: 657  MLAMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGY 716
            ML MNEN ISGNLQNEMVQIYLSEVLDW+++L+AQ+KWDEKAYSPTR KLLSALESISGY
Sbjct: 661  MLVMNENGISGNLQNEMVQIYLSEVLDWHAELNAQEKWDEKAYSPTRNKLLSALESISGY 720

Query: 717  NPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQP 776
            NPE LLKRLPADALYEERA+LLGKMNQHELALSLYVHKL VP+LAL+YCDRVYES AH P
Sbjct: 721  NPEALLKRLPADALYEERALLLGKMNQHELALSLYVHKLHVPDLALSYCDRVYESAAHLP 780

Query: 777  SGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKK 836
            S KSSGNIYLTLLQIYLNPR+TT NFEK+ITNLVS QNT +PK  SVT VK KGGR TKK
Sbjct: 781  SAKSSGNIYLTLLQIYLNPRKTTMNFEKRITNLVSFQNTNVPKVSSVTPVKAKGGRATKK 840

Query: 837  IASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALK 896
            IA+IEGAED+R+SPS TDS RSDGDA+EF +EG STIM+D+VLDLLS+RWDRINGAQALK
Sbjct: 841  IAAIEGAEDLRVSPSGTDSSRSDGDADEFGDEGGSTIMLDEVLDLLSKRWDRINGAQALK 900

Query: 897  LLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSD 956
            LLPRETKLQNLLPFL PLL+KSSEA+RNLSVIKSLRQSENLQV+DE+YN+RKTVVKITSD
Sbjct: 901  LLPRETKLQNLLPFLGPLLKKSSEAYRNLSVIKSLRQSENLQVRDEMYNRRKTVVKITSD 960

Query: 957  SMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR 1004
            + CSLC+KKIGTSVFAVYPNGKTIVHFVCF+DSQS+KAVAKGS LRKR
Sbjct: 961  TTCSLCNKKIGTSVFAVYPNGKTIVHFVCFKDSQSIKAVAKGSALRKR 1008

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430766|ref|XP_002267514.1| PREDICTED: vam6/Vps39-like protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561166|ref|XP_002521595.1| conserved hypothetical protein [Ricinus communis] gi|223539273|gb|EEF40866.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449462842|ref|XP_004149149.1| PREDICTED: vam6/Vps39-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449517638|ref|XP_004165852.1| PREDICTED: LOW QUALITY PROTEIN: vam6/Vps39-like protein-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297735158|emb|CBI17520.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496767|ref|XP_003517237.1| PREDICTED: vam6/Vps39-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|297798238|ref|XP_002867003.1| hypothetical protein ARALYDRAFT_490975 [Arabidopsis lyrata subsp. lyrata] gi|297312839|gb|EFH43262.1| hypothetical protein ARALYDRAFT_490975 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|240256190|ref|NP_195381.6| Vacuolar sorting protein 39 [Arabidopsis thaliana] gi|20466826|gb|AAM20730.1| unknown protein [Arabidopsis thaliana] gi|332661279|gb|AEE86679.1| Vacuolar sorting protein 39 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356538190|ref|XP_003537587.1| PREDICTED: vam6/Vps39-like protein-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1004
TAIR|locus:21153551000 EMB2754 "EMBRYO DEFECTIVE 2754 0.994 0.998 0.681 0.0
MGI|MGI:2443189886 Vps39 "vacuolar protein sortin 0.369 0.418 0.309 2e-74
ZFIN|ZDB-GENE-080530-2875 vps39 "vacuolar protein sortin 0.364 0.418 0.290 2.4e-74
UNIPROTKB|E9PT04875 Vps39 "Protein Vps39" [Rattus 0.360 0.413 0.308 2.1e-73
UNIPROTKB|Q96JC1886 VPS39 "Vam6/Vps39-like protein 0.369 0.418 0.309 6.5e-73
UNIPROTKB|E2RRH8887 VPS39 "Uncharacterized protein 0.370 0.419 0.306 1.9e-72
UNIPROTKB|F1SFK5875 VPS39 "Uncharacterized protein 0.360 0.413 0.308 1.3e-71
UNIPROTKB|E1BM41875 VPS39 "Uncharacterized protein 0.360 0.413 0.310 4.7e-71
UNIPROTKB|E2RG39875 VPS39 "Uncharacterized protein 0.360 0.413 0.305 7.3e-71
UNIPROTKB|F1NID0876 VPS39 "Uncharacterized protein 0.361 0.414 0.303 1.9e-70
TAIR|locus:2115355 EMB2754 "EMBRYO DEFECTIVE 2754" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3516 (1242.8 bits), Expect = 0., P = 0.
 Identities = 686/1006 (68%), Positives = 813/1006 (80%)

Query:     1 MVHNAFDSLELISNCSPKIDAVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLR 60
             MVHNA+DS +L+ +C  +IDAV SYG K+  GC DGSL+IYSP   ES  S PS+   L 
Sbjct:     1 MVHNAYDSFQLLKDCPARIDAVESYGSKLFAGCYDGSLRIYSP--PESSASDPSE---LH 55

Query:    61 KESYELERTISGFSKKPILSMEVLASRQLLLSLSESIAFHRLPNLETIAVLTKAKGANVY 120
             +E+Y LE+T++GFSKKPI++MEVLASR+LLLSLSESIAFH LPNLET+AV+TKAKGAN Y
Sbjct:    56 QETYVLEKTVAGFSKKPIVAMEVLASRELLLSLSESIAFHGLPNLETVAVITKAKGANAY 115

Query:   121 SWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICIAIRKGYMI 180
             SWDDRRGFLCF+RQKRVC+F+HDGG GFVEV+D+GVPDTVKS+SWCGENIC+ I+K Y+I
Sbjct:   116 SWDDRRGFLCFSRQKRVCVFKHDGGGGFVEVRDYGVPDTVKSISWCGENICLGIKKEYVI 175

Query:   181 LNATNGALSEVFPSGRIGXXXXXXXXXXXXXXXXXNIGVFVDQNGKLLQADRICWSEAPI 240
             LN  NG LSEVFPSGR+                  NIGVFVDQNGKLLQ +RICWSEAP 
Sbjct:   176 LNTANGTLSEVFPSGRVAPPLVISLPSGELILGKENIGVFVDQNGKLLQTERICWSEAPT 235

Query:   241 AVIIQKPYAIALLPRRVEVRSLRVPYALIQTIVLQNVRHLIPSSNAVVVALENSIFGLFP 300
             +++IQ PYAIALLPRRVEVR LR PY LIQTIVLQN+R L+ S+NAV+V L+NS++ LFP
Sbjct:   236 SIVIQNPYAIALLPRRVEVRLLRSPYPLIQTIVLQNIRRLVKSNNAVIVGLDNSVYVLFP 295

Query:   301 VPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRFAHYLFDTGSYEEAME 360
             V +GAQIVQLTASG+FEEALALCK+LPP+++SLRAAKE SIH RFAHYLF+ GSYEEAME
Sbjct:   296 VSIGAQIVQLTASGNFEEALALCKVLPPDESSLRAAKESSIHTRFAHYLFENGSYEEAME 355

Query:   361 HFLASQVDITYALSLYPSIVLPKTTVVPEPERLLDISSDAPXXXXXXXXXXXXXXXXPPA 420
             HFLASQVDIT+ LS+YPSI+LPKTT++P+P++++DIS D                   P 
Sbjct:   356 HFLASQVDITHVLSMYPSIILPKTTIIPQPDKMVDISGDEASLSRGSSGISDDMESSSPR 415

Query:   421 QLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHD 480
                E ++NA L+SKKMSHNTLMALIK+L K+R ++IEKAT+EGTEEV+ DAVG  + ++D
Sbjct:   416 YFLESEDNADLESKKMSHNTLMALIKYLLKRRPAVIEKATSEGTEEVISDAVGKTYGAND 475

Query:   481 STRFKKSSKGRGTIPMYSGAREMXXXXXXXXXXXXXXXXXXXXXXELLKGLNYCDVKICE 540
             S++ KKSSKGRG IP+ SGAREM                      ELLKG+NY DVKICE
Sbjct:   476 SSKSKKSSKGRGMIPLNSGAREMAAILDTALLQALLHTGQSGAAIELLKGVNYSDVKICE 535

Query:   541 EILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKP 600
             EIL K  +Y+ALLEL+KSN+ H EALKLL++L +ESK+NQSQ + TQ F+PE IIEYLKP
Sbjct:   536 EILMKSKNYSALLELFKSNSMHHEALKLLNQLADESKTNQSQTDVTQIFSPELIIEYLKP 595

Query:   601 LCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQYSPSMQGRYLELMLAM 660
             LC TDPMLVLE+SMLVLESCPTQTI+LFLSGNI ADLVNSYLKQ++P+MQGRYLELM+AM
Sbjct:   596 LCRTDPMLVLEYSMLVLESCPTQTIDLFLSGNISADLVNSYLKQHAPNMQGRYLELMMAM 655

Query:   661 NENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEV 720
             N+ ++SGNLQNEMVQIYLSEVLD Y+  SAQQKWDEK + P RKKLLSALESISGY+P+ 
Sbjct:   656 NDTAVSGNLQNEMVQIYLSEVLDLYAAKSAQQKWDEKDHPPERKKLLSALESISGYSPQP 715

Query:   721 LLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIAHQPSGKS 780
             LLKRLP DALYEERA++LGKMNQHELALS+YVHKL  P+LALAYCDR+YES+ + PSGK 
Sbjct:   716 LLKRLPRDALYEERAVILGKMNQHELALSIYVHKLHAPDLALAYCDRIYESVTYLPSGKP 775

Query:   781 SGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKA-GSVTAVKVKGGRTTKKIAS 839
             S NIYLT+LQIYLNP+++ K+F K+I  L S +++   K   SV + K KGGR+ KKI +
Sbjct:   776 SSNIYLTVLQIYLNPKKSAKDFAKRIVALGSFESSDTTKMMDSVLSSKAKGGRS-KKIVA 834

Query:   840 IEGAEDMRMS-PSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLL 898
             IEGAEDMR+   SSTDSGRSD D EE  EEGDST+MI +VLDLLSQRW+RINGAQALKLL
Sbjct:   835 IEGAEDMRVGLSSSTDSGRSDVDTEEPLEEGDSTVMISEVLDLLSQRWERINGAQALKLL 894

Query:   899 PRETKXXXXXXXXXXXXRKSSEAHRNLSVIKSLRQSENLQVKDELYNQRKTVVKITSDSM 958
             PRETK            R SSEAHRN SVIKSLRQSENLQVK+ELY  RK V ++TS+SM
Sbjct:   895 PRETKLHNLLPFLAPLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKHRKGVAQVTSESM 954

Query:   959 CSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKGSPLRKR 1004
             CSLC+KKIGTSVFAVYPNGKT+VHFVCFRDSQ MKAV+K +  R+R
Sbjct:   955 CSLCNKKIGTSVFAVYPNGKTLVHFVCFRDSQGMKAVSKTTHGRRR 1000
GO:0005083 "small GTPase regulator activity" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0042732 "D-xylose metabolic process" evidence=RCA
MGI|MGI:2443189 Vps39 "vacuolar protein sorting 39 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080530-2 vps39 "vacuolar protein sorting 39 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E9PT04 Vps39 "Protein Vps39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q96JC1 VPS39 "Vam6/Vps39-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRH8 VPS39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFK5 VPS39 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM41 VPS39 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RG39 VPS39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NID0 VPS39 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_570086
hypothetical protein (1009 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1004
pfam10367109 pfam10367, Vps39_2, Vacuolar sorting protein 39 do 7e-41
pfam00780266 pfam00780, CNH, CNH domain 3e-32
pfam10366105 pfam10366, Vps39_1, Vacuolar sorting protein 39 do 1e-30
COG54221175 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange 2e-08
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 2e-05
pfam00637143 pfam00637, Clathrin, Region in Clathrin and VPS 0.001
smart00299140 smart00299, CLH, Clathrin heavy chain repeat homol 0.002
>gnl|CDD|150957 pfam10367, Vps39_2, Vacuolar sorting protein 39 domain 2 Back     alignment and domain information 
 Score =  145 bits (368), Expect = 7e-41
 Identities = 51/110 (46%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 879 LDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQSENLQ 938
           LDLL++  +RI+ A  L LLP +  LQ L  FLE  LR S+E  R   V+K+L ++ENLQ
Sbjct: 1   LDLLNKHGERIDPASVLDLLPDDVPLQLLESFLERALRNSTEQKREAQVVKNLLKAENLQ 60

Query: 939 VKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRD 988
           V++EL   R   V++T +S+C++C K++G SVF VYPNG  +VH+ C   
Sbjct: 61  VEEELLKLRSRHVRVTEESVCAVCHKRLGNSVFVVYPNG-VVVHYGCADR 109

This domain is found on the vacuolar sorting protein Vps39 which is a component of the C-Vps complex. Vps39 is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole. In Saccharomyces cerevisiae, Vps39 has been shown to stimulate nucleotide exchange. This domain is involved in localisation and in mediating the interactions of Vps39 with Vps11. Length = 109
>gnl|CDD|216115 pfam00780, CNH, CNH domain Back     alignment and domain information
>gnl|CDD|220718 pfam10366, Vps39_1, Vacuolar sorting protein 39 domain 1 Back     alignment and domain information
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|216037 pfam00637, Clathrin, Region in Clathrin and VPS Back     alignment and domain information
>gnl|CDD|128594 smart00299, CLH, Clathrin heavy chain repeat homology Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1004
KOG2063877 consensus Vacuolar assembly/sorting proteins VPS39 100.0
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 100.0
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 100.0
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 100.0
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 99.95
smart00036302 CNH Domain found in NIK1-like kinases, mouse citro 99.93
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 99.89
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 99.84
COG54221175 ROM1 RhoGEF, Guanine nucleotide exchange factor fo 99.82
smart00299140 CLH Clathrin heavy chain repeat homology. 99.53
KOG43051029 consensus RhoGEF GTPase [Signal transduction mecha 99.43
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 99.29
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.39
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.36
KOG2066846 consensus Vacuolar assembly/sorting protein VPS41 98.22
KOG0294362 consensus WD40 repeat-containing protein [Function 98.1
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 98.02
KOG0291893 consensus WD40-repeat-containing subunit of the 18 97.9
KOG0576829 consensus Mitogen-activated protein kinase kinase 97.88
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.82
KOG1273405 consensus WD40 repeat protein [General function pr 97.79
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 97.63
KOG2048691 consensus WD40 repeat protein [General function pr 97.49
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 97.48
PF05131147 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPr 97.48
KOG3621726 consensus WD40 repeat-containing protein [General 97.46
KOG20791206 consensus Vacuolar assembly/sorting protein VPS8 [ 97.45
KOG1539910 consensus WD repeat protein [General function pred 97.35
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 97.17
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 97.08
KOG0289506 consensus mRNA splicing factor [General function p 97.08
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 97.03
KOG0587953 consensus Traf2- and Nck-interacting kinase and re 96.94
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 96.88
KOG0310487 consensus Conserved WD40 repeat-containing protein 96.78
PF00637143 Clathrin: Region in Clathrin and VPS; InterPro: IP 96.78
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 96.76
smart00299140 CLH Clathrin heavy chain repeat homology. 96.76
KOG0299479 consensus U3 snoRNP-associated protein (contains W 96.74
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 96.65
KOG1274933 consensus WD40 repeat protein [General function pr 96.62
PF14761215 HPS3_N: Hermansky-Pudlak syndrome 3 96.62
PRK11028330 6-phosphogluconolactonase; Provisional 96.55
KOG0318603 consensus WD40 repeat stress protein/actin interac 96.5
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 96.43
KOG1274933 consensus WD40 repeat protein [General function pr 96.42
KOG0291893 consensus WD40-repeat-containing subunit of the 18 96.39
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 96.37
PTZ00420568 coronin; Provisional 96.3
PTZ00420568 coronin; Provisional 96.28
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 96.23
KOG0279315 consensus G protein beta subunit-like protein [Sig 96.14
KOG0646476 consensus WD40 repeat protein [General function pr 96.03
KOG0279315 consensus G protein beta subunit-like protein [Sig 95.78
KOG2055514 consensus WD40 repeat protein [General function pr 95.76
KOG1407313 consensus WD40 repeat protein [Function unknown] 95.74
PLN00181793 protein SPA1-RELATED; Provisional 95.74
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 95.69
KOG0275508 consensus Conserved WD40 repeat-containing protein 95.68
PTZ00421493 coronin; Provisional 95.65
KOG2315566 consensus Predicted translation initiation factor 95.45
PLN00181793 protein SPA1-RELATED; Provisional 95.33
PTZ00421493 coronin; Provisional 95.16
KOG0646476 consensus WD40 repeat protein [General function pr 95.01
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 94.94
KOG2055514 consensus WD40 repeat protein [General function pr 94.94
KOG0772641 consensus Uncharacterized conserved protein, conta 94.84
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 94.82
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 94.82
KOG0315311 consensus G-protein beta subunit-like protein (con 94.8
KOG09761265 consensus Rho/Rac1-interacting serine/threonine ki 94.79
KOG1273405 consensus WD40 repeat protein [General function pr 94.74
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 94.62
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 94.61
KOG0266456 consensus WD40 repeat-containing protein [General 94.61
KOG1539910 consensus WD repeat protein [General function pred 94.48
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 94.47
KOG2048691 consensus WD40 repeat protein [General function pr 94.43
PRK11028330 6-phosphogluconolactonase; Provisional 94.42
PLN032181060 maturation of RBCL 1; Provisional 94.38
KOG0278334 consensus Serine/threonine kinase receptor-associa 94.34
KOG0266456 consensus WD40 repeat-containing protein [General 94.29
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 94.25
KOG0772641 consensus Uncharacterized conserved protein, conta 94.18
KOG14451012 consensus Tumor-specific antigen (contains WD repe 94.17
KOG0319775 consensus WD40-repeat-containing subunit of the 18 94.17
KOG0647347 consensus mRNA export protein (contains WD40 repea 94.17
KOG0294362 consensus WD40 repeat-containing protein [Function 94.15
KOG02921202 consensus Vesicle coat complex COPI, alpha subunit 94.12
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 94.08
KOG2110391 consensus Uncharacterized conserved protein, conta 93.97
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 93.55
PF10366108 Vps39_1: Vacuolar sorting protein 39 domain 1; Int 93.54
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 93.25
KOG0647347 consensus mRNA export protein (contains WD40 repea 93.16
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 93.04
KOG0296399 consensus Angio-associated migratory cell protein 92.76
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 92.63
KOG0306888 consensus WD40-repeat-containing subunit of the 18 92.57
KOG2106626 consensus Uncharacterized conserved protein, conta 92.48
KOG0640430 consensus mRNA cleavage stimulating factor complex 92.44
KOG0316307 consensus Conserved WD40 repeat-containing protein 92.41
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 92.37
KOG0315311 consensus G-protein beta subunit-like protein (con 92.32
KOG0316307 consensus Conserved WD40 repeat-containing protein 92.22
KOG0318603 consensus WD40 repeat stress protein/actin interac 92.2
KOG0310487 consensus Conserved WD40 repeat-containing protein 92.13
PF14727418 PHTB1_N: PTHB1 N-terminus 92.08
KOG0288459 consensus WD40 repeat protein TipD [General functi 91.99
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 91.95
KOG0306888 consensus WD40-repeat-containing subunit of the 18 91.81
KOG0275508 consensus Conserved WD40 repeat-containing protein 91.79
KOG03071049 consensus Vesicle coat complex COPII, subunit SEC3 91.67
KOG2111346 consensus Uncharacterized conserved protein, conta 91.66
KOG0319775 consensus WD40-repeat-containing subunit of the 18 91.53
PF09943101 DUF2175: Uncharacterized protein conserved in arch 91.48
KOG0282503 consensus mRNA splicing factor [Function unknown] 91.45
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 91.37
KOG2110391 consensus Uncharacterized conserved protein, conta 91.16
KOG0263707 consensus Transcription initiation factor TFIID, s 91.03
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 90.72
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 90.64
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 90.62
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 90.59
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 90.44
KOG0288459 consensus WD40 repeat protein TipD [General functi 90.21
KOG2321703 consensus WD40 repeat protein [General function pr 90.2
COG4847103 Uncharacterized protein conserved in archaea [Func 90.17
KOG0293519 consensus WD40 repeat-containing protein [Function 90.17
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 90.16
KOG1188376 consensus WD40 repeat protein [General function pr 90.11
KOG2321703 consensus WD40 repeat protein [General function pr 90.06
KOG0649325 consensus WD40 repeat protein [General function pr 90.04
KOG0639705 consensus Transducin-like enhancer of split protei 90.03
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 89.99
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 89.95
KOG0284464 consensus Polyadenylation factor I complex, subuni 89.91
KOG02921202 consensus Vesicle coat complex COPI, alpha subunit 89.61
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 89.49
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 89.21
KOG0283712 consensus WD40 repeat-containing protein [Function 89.13
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 88.56
KOG2139445 consensus WD40 repeat protein [General function pr 88.34
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 88.23
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 88.12
KOG0289506 consensus mRNA splicing factor [General function p 87.91
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 87.78
KOG0270463 consensus WD40 repeat-containing protein [Function 87.69
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 87.36
KOG12401431 consensus Protein kinase containing WD40 repeats [ 87.22
PF1234127 DUF3639: Protein of unknown function (DUF3639) ; I 87.13
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 87.04
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 87.03
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 86.76
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 86.63
KOG0643327 consensus Translation initiation factor 3, subunit 86.46
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 86.39
KOG0771398 consensus Prolactin regulatory element-binding pro 86.13
KOG0278334 consensus Serine/threonine kinase receptor-associa 86.1
PF14763353 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal 86.07
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 86.06
KOG2111346 consensus Uncharacterized conserved protein, conta 85.9
KOG2041 1189 consensus WD40 repeat protein [General function pr 85.7
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 85.53
KOG0299479 consensus U3 snoRNP-associated protein (contains W 85.39
COG5243 491 HRD1 HRD ubiquitin ligase complex, ER membrane com 85.31
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 85.28
KOG2076 895 consensus RNA polymerase III transcription factor 85.18
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 84.96
KOG0293519 consensus WD40 repeat-containing protein [Function 84.4
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 84.27
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 84.19
KOG1407313 consensus WD40 repeat protein [Function unknown] 84.04
PF13512142 TPR_18: Tetratricopeptide repeat 83.98
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 83.89
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 83.2
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 83.17
KOG0649325 consensus WD40 repeat protein [General function pr 83.14
KOG0269839 consensus WD40 repeat-containing protein [Function 83.13
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 82.24
KOG19201265 consensus IkappaB kinase complex, IKAP component [ 82.21
KOG0282503 consensus mRNA splicing factor [Function unknown] 81.64
KOG1272545 consensus WD40-repeat-containing subunit of the 18 81.46
KOG2106626 consensus Uncharacterized conserved protein, conta 81.25
smart0050463 Ubox Modified RING finger domain. Modified RING fi 81.24
KOG2139445 consensus WD40 repeat protein [General function pr 81.18
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 80.96
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 80.87
KOG0284464 consensus Polyadenylation factor I complex, subuni 80.32
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 80.13
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 80.09
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-108  Score=964.01  Aligned_cols=847  Identities=38%  Similarity=0.588  Sum_probs=703.1

Q ss_pred             CCCcccccccccCCCCcEE-EEEEeCCEEEEEeCCCcEEEEcCCCCCCCCCCCCcccccccccceeeeeecCCCCCceeE
Q 001851            2 VHNAFDSLELISNCSPKID-AVASYGLKILLGCSDGSLKIYSPGSSESDRSPPSDYQSLRKESYELERTISGFSKKPILS   80 (1004)
Q Consensus         2 ~~~~f~~~~l~~~~~~~I~-ci~~~~~~L~iGt~~G~l~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~I~q   80 (1004)
                      ||.||++.+++-.+|..|+ |++.||+.||+||.+|.|++|.+.......++.     .-.-++.+   ...|+|+||.+
T Consensus         1 m~~a~~~~~i~~~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~-----~~~~~~~~---~~~~~kk~i~~   72 (877)
T KOG2063|consen    1 MHKAFTLVEILERLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVE-----LVTETVKF---EKEFSKKPINK   72 (877)
T ss_pred             CCcccchhhHhhhcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchh-----hhcchhHH---hhhhccchhHH
Confidence            8999999999999999999 999999999999999999999998875543210     00001111   13467999999


Q ss_pred             EEEecccCceeeeeCc-eEEEeCCCCcccccccCCCCcEEEEecCCC---c----EEEEEECCeEEEEEecCCCceeEee
Q 001851           81 MEVLASRQLLLSLSES-IAFHRLPNLETIAVLTKAKGANVYSWDDRR---G----FLCFARQKRVCIFRHDGGRGFVEVK  152 (1004)
Q Consensus        81 I~~l~~~~~ll~l~d~-v~~~~L~~l~~~~~i~~~kg~~~f~~~~~~---~----~l~V~~kkki~l~~~~~~~~f~~~k  152 (1004)
                      |.+++..+++++++|+ +.+|.++++++.+..++.||++.|+.+..+   +    .+|+..++++..|.|.++..+...+
T Consensus        73 l~~~~~~~~ll~l~dsqi~~~~l~~~~~~~~~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~  152 (877)
T KOG2063|consen   73 LLVCASLELLLILSDSQIAVHKLPELEPVPSGTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVK  152 (877)
T ss_pred             HhhcchhcchheecCCcceeeecCcccccccccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEE
Confidence            9999999999999995 999999999998888999999999997654   4    6888889999999998655677889


Q ss_pred             eeecCCCceEEEecCCeEEEEEcCceEEEEcCCC-CcccccCCC---CCCCCEEEEccCC-eEEEEeCCeEEEEcCCCCc
Q 001851          153 DFGVPDTVKSMSWCGENICIAIRKGYMILNATNG-ALSEVFPSG---RIGPPLVVSLLSG-ELLLGKENIGVFVDQNGKL  227 (1004)
Q Consensus       153 Ei~l~d~~~~l~~~~~~i~v~~~~~y~lidl~~~-~~~~L~~~~---~~~~p~i~~~~~~-E~Ll~~~~~gvfv~~~G~~  227 (1004)
                      ++.+++.|.+++|+|..+|+|..+.|++++..+. ....+++.+   .+..|+|+.+.++ +++++.|+.|+|||.+|.+
T Consensus       153 ~~~~~~~p~~~~~~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~  232 (877)
T KOG2063|consen  153 ELGFPDVPKARAWCGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDLNGII  232 (877)
T ss_pred             ecccccchhhhcccceeEEEeecceeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEecCCcc
Confidence            9999999999999999999999988888887754 444566665   4578999999998 8899999999999999998


Q ss_pred             ccCcceeecCCCceEEEeCCeEEEEcCCeeEEEEccCCCceeEEE-eeCCccccccCCC-eEEEEeCCeEEEecccC-hH
Q 001851          228 LQADRICWSEAPIAVIIQKPYAIALLPRRVEVRSLRVPYALIQTI-VLQNVRHLIPSSN-AVVVALENSIFGLFPVP-LG  304 (1004)
Q Consensus       228 ~~~~~i~w~~~P~~i~~~~PYll~~~~~~ieV~~l~~~~~lvQti-~l~~~~~l~~~~~-~v~vas~~~i~~l~~~~-~~  304 (1004)
                      ..++++.|+..|.++++.+||++|+.+.++|||++. ++.+||+| +++.++.++++.+ .+|+++.+.+|+|.|+| +.
T Consensus       233 ~~~~~l~ws~~P~~v~~~~PYlIa~~~~~veI~s~~-~~qlvQSI~~~~~~~~l~s~~~~i~~~~~~s~v~~L~p~~~~~  311 (877)
T KOG2063|consen  233 AQRGTLVWSEVPLSVVVESPYLIALLDRSVEIRSKL-DGQLVQSITPLSNGRSLLSAHNGIIFVASLSNVWILVPVSNFE  311 (877)
T ss_pred             cCCCceEecccchhhcccCceEEEEccccEEEEecc-CHHHhhccccccccceeeecCCcEEEEEeccceEEEEeccchH
Confidence            668999999999999999999999999999999997 68999999 9999888776554 55566669999999999 99


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCchhhhhhhhhHHHHHHH-HHHHHcCCCHHHHHHHHHhcCCCHHHHHHhCCCCCCCC
Q 001851          305 AQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRF-AHYLFDTGSYEEAMEHFLASQVDITYALSLYPSIVLPK  383 (1004)
Q Consensus       305 ~qi~~Ll~~~~~eeAl~L~~~~~~~~~~~~~~~~~~i~~~~-a~~lf~~~~f~~A~~~f~~~~~dp~~vi~Lfp~~~~~~  383 (1004)
                      .||+.|++.++|++|++|++.... ..+.+...+..++.++ |+.+|.+++|++||.+|.++.+||+.||+|||++++..
T Consensus       312 ~qi~~lL~~k~fe~ai~L~e~~~~-~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~  390 (877)
T KOG2063|consen  312 KQIQDLLQEKSFEEAISLAEILDS-PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSE  390 (877)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccCC-CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCc
Confidence            999999999999999999987642 3333334556777777 89999999999999999999999999999999987543


Q ss_pred             CCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001851          384 TTVVPEPERLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALIKFLQKKRSSIIEKATAEG  463 (1004)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~p~~l~~~d~~~~~~~~~~~~~a~~~L~~yL~~~R~~~~~~~~~~~  463 (1004)
                      ...    -.|+..+..                  +-+..+.+|.          ..|..+++.||+..|+...+..+.. 
T Consensus       391 ~~~----~~~~~~vp~------------------~~~~~~~~~~----------v~a~l~~~~ylt~~r~~~~~~l~~~-  437 (877)
T KOG2063|consen  391 NSS----IEFTGVVPI------------------RAPELRGGDL----------VPAVLALIVYLTQSRREENKKLNKY-  437 (877)
T ss_pred             ccc----cceeeeccC------------------chhhhccCcc----------cchhhhhhhHhHHHHHHHHHHHHHh-
Confidence            311    011111110                  0001111110          1345588889888887654332211 


Q ss_pred             chhhhhhcccCCCcCCCccccccCCCCCCCccccchHHHHHHHHHHHHHHHHHhcCChhhHHhhhcCCC-cccHHHHHHH
Q 001851          464 TEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAAILDTALLQALLLTGQSSAALELLKGLN-YCDVKICEEI  542 (1004)
Q Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDT~Ll~~yl~~~~~~~l~~ll~~~n-~c~~~~~~~~  542 (1004)
                          .+     +.  +  +.+++   ...+.....+...++++|||+|+|||+++++ ....+++|.+| +|++++++.+
T Consensus       438 ----~m-----~~--~--~~~~~---~~~s~~~~~~~~~~~~~IDttLlk~Yl~~n~-~~v~~llrlen~~c~vee~e~~  500 (877)
T KOG2063|consen  438 ----KM-----LY--M--NYFKN---TLISELLKSDLNDILELIDTTLLKCYLETNP-GLVGPLLRLENNHCDVEEIETV  500 (877)
T ss_pred             ----hh-----hH--H--hhhhc---cCcchhhccchHHHHHHHHHHHHHHHHhcCc-hhhhhhhhccCCCcchHHHHHH
Confidence                00     00  0  00000   0001111233667889999999999999985 45678999775 9999999999


Q ss_pred             HHhcCcHHHHHHHHHhhccHHHHHHHHHHHhhccc-CCCCccccccCCChHhHHHHhcccCCCCchhHHhhchhhhccCc
Q 001851          543 LQKKNHYTALLELYKSNARHREALKLLHELVEESK-SNQSQDEHTQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCP  621 (1004)
Q Consensus       543 L~~~~~~~~L~~Ly~~~g~~~~AL~ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~yL~~L~~~~~~li~~~~~wll~~~p  621 (1004)
                      |+++++|.+|+.||+.+|+|++||++|.+++++.. .|+     ....+++.+++||+++..++.+|||+|+.|+++.+|
T Consensus       501 L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-----~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p  575 (877)
T KOG2063|consen  501 LKKSKKYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-----FQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNP  575 (877)
T ss_pred             HHhcccHHHHHHHHHhccchHHHHHHHHHHhcccccccc-----chhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCc
Confidence            99999999999999999999999999999998763 433     233467889999999999999999999999999999


Q ss_pred             cchhccccc------CCCChHHHHHHHhhcCccchhhhHHHHHhcccCCCCcchHHHHHHHHHHHHHH-hhhhhhhhccc
Q 001851          622 TQTIELFLS------GNIPADLVNSYLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIYLSEVLD-WYSDLSAQQKW  694 (1004)
Q Consensus       622 ~~~i~if~~------~~l~~~~vl~~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Yl~~~~~-~~~~~~~~~~~  694 (1004)
                      +.|++||++      +++++++|++||.+..+.+.+.|||++|.++ ......|||.|+.+|++.+.+ ...+    ++.
T Consensus       576 ~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~-~~~~~~lht~ll~ly~e~v~~~~~~~----~kg  650 (877)
T KOG2063|consen  576 EAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN-RLTSTLLHTVLLKLYLEKVLEQASTD----GKG  650 (877)
T ss_pred             hhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc-cccchHHHHHHHHHHHHHHhhccCch----hcc
Confidence            999999998      2599999999999999999999999999876 446789999999999999884 1111    111


Q ss_pred             CcccchH-HHHHHHHHHhhcCCCChHHHhccCCCCchhHHHHHHHhccccHHHHHHHHHHHhCCHHHHHHHHHHHhhhcc
Q 001851          695 DEKAYSP-TRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPELALAYCDRVYESIA  773 (1004)
Q Consensus       695 ~~~~~~~-~r~kLl~fL~~s~~Yd~~~~L~~~~~~~l~~e~~~Ll~rlg~h~~AL~ilv~~L~D~~~Ae~YC~~~~~~~~  773 (1004)
                      + +.... .|+||..||+.|+.|+++.+|..++.+.|++|+++++||+|+|++||+||++.|+|+++|+.||..+|+.  
T Consensus       651 ~-e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~--  727 (877)
T KOG2063|consen  651 E-EAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYES--  727 (877)
T ss_pred             c-cchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccC--
Confidence            1 11122 5999999999999999999999999999999999999999999999999999999999999999999962  


Q ss_pred             CCCCCCCCCChHHHHHHHhcCCCCCcchhhhhhcccccCCCCCCCCCCcccceeccCCccccchhcccccccccCCCCCC
Q 001851          774 HQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKKIASIEGAEDMRMSPSST  853 (1004)
Q Consensus       774 ~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  853 (1004)
                          +....+.|..||.+|+.+..+   +            .                                      
T Consensus       728 ----~~~~~~~y~~lL~~~l~~~~d---~------------~--------------------------------------  750 (877)
T KOG2063|consen  728 ----DKTNKEIYLTLLRIYLNPIHD---Y------------K--------------------------------------  750 (877)
T ss_pred             ----CCcccHHHHHHHHHHhcchhh---c------------c--------------------------------------
Confidence                235789999999999987221   0            0                                      


Q ss_pred             CCCCCCCCcccccccCCccccHHHHHHHHhhccCCCChhhhcccCCcccchhchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001851          854 DSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLRKSSEAHRNLSVIKSLRQ  933 (1004)
Q Consensus       854 ~s~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~ld~~~vL~~lP~~~~l~~l~~fL~~~l~~~~~~~r~~~i~~~l~~  933 (1004)
                                         ...-.++.+|++|++++|+..|+++||++|++..+.+|+.+.||...+..|+.++.+++++
T Consensus       751 -------------------~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~~~Lr~~~~~~r~~q~~~~l~q  811 (877)
T KOG2063|consen  751 -------------------SGPLYILNFLQKHADRLDLAQVLKLLPDDISLKDLCSFLSKLLRKRFEALRTTQVQKSLLQ  811 (877)
T ss_pred             -------------------ccchhhhhHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                               0023577799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccccceEEECCCCcCCcCCCccCCcEEEEcCCCCeEEEecccCCchhhhhhccC
Q 001851          934 SENLQVKDELYNQRKTVVKITSDSMCSLCSKKIGTSVFAVYPNGKTIVHFVCFRDSQSMKAVAKG  998 (1004)
Q Consensus       934 ~~~~~~~~el~~~~~~~v~i~~~~~C~vC~k~l~~~~f~v~p~~~~v~H~~C~~~~~~~~~~~~~  998 (1004)
                      ++++...+++.+.++..++|+.+..|.+|.|+||.++|++||+| +++|++|.++.|+...+++.
T Consensus       812 ~E~~~~~~~l~~~~s~~~~l~~~~~C~~C~k~i~~s~f~ryp~g-~lvh~~C~~~~q~~~~~~~~  875 (877)
T KOG2063|consen  812 AELLPSTEELNKLRSSKIQLNDESLCSICEKRIGTSVFVRYPNG-ILVHLSCAKDLQGSKAVKNE  875 (877)
T ss_pred             HhhcchHHHHHHhhcceEEEchhhHhHHHHhhhcCeeEEECCCC-cEEEEEeechhccccccCCC
Confidence            99999999999999999999999999999999999999999999 99999999999999888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms] Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4847 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PF14763 HPS3_C: Hermansky-Pudlak syndrome 3, C-terminal Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1004
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1xi4_A 1630 Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle 6e-11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 82.6 bits (203), Expect = 4e-16
 Identities = 95/656 (14%), Positives = 191/656 (29%), Gaps = 203/656 (30%)

Query: 342 HIRFAHYLFDTG----SYEEAMEHFLASQV---DITYALSLYPSIVLPKTTV-----VPE 389
           H    H  F+TG     Y++ +  F  + V   D        P  +L K  +       +
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD-MPKSILSKEEIDHIIMSKD 59

Query: 390 PE----RLLDISSDAPSLSRGSSGMSDDMESSPPAQLSELDENATLKSKKMSHNTLMALI 445
                 RL         LS+    +   +E         L  N         +  LM+ I
Sbjct: 60  AVSGTLRLFWTL-----LSKQEEMVQKFVEEV-------LRIN---------YKFLMSPI 98

Query: 446 KFLQKKRSSIIEKATAEGTEEVVLDAVGDNFTSHDSTRFKKSSKGRGTIPMYSGAREMAA 505
           K  Q++ S +         +   L      F  ++ +R +   K                
Sbjct: 99  KTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLK---------------- 139

Query: 506 ILDTALLQA-----LLL-----TGQSSAALELLK----------GLNYCDVKIC---EEI 542
            L  ALL+      +L+     +G++  AL++             + + ++K C   E +
Sbjct: 140 -LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 543 LQK-KNHYTALLELYKSNARHREALKLLHELVEESKSN--QSQD--------------EH 585
           L+  +     +   + S + H   +KL    ++       +S+               + 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 586 TQKFNPE----------SIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLS--GNI 633
              FN             + ++L     T   L      L     P +   L L      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCR 314

Query: 634 PADLVNSYLKQYSP---SMQGRYLELMLAMNEN--SISGNLQNEMVQIYLSEVLD----- 683
           P DL    +   +P   S+    +   LA  +N   ++ +    +++  L  VL+     
Sbjct: 315 PQDLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYR 372

Query: 684 -WYSDLSAQQKWDEKAYSPTRKKLLSALESISGYNPEVLLKRLPADALYEERAILLGKMN 742
             +  LS                       I    P +LL  +  D +  +  +++ K++
Sbjct: 373 KMFDRLSVFPP-SAH---------------I----PTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 743 Q---------------HELALSL--------YVHKLCVP--ELALAYC---------DR- 767
           +                 + L L         +H+  V    +   +          D+ 
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 768 VYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNF-EKQITNLVSSQNTTIPKAGSVTAV 826
            Y  I H                ++L+ R     F E++I +  ++ N +     ++  +
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFR-----FLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 827 KVKGGRTTKKIASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLL 882
           K             E               R      +F  + +  ++  +  DLL
Sbjct: 528 KFYKPYICDNDPKYE---------------RLVNAILDFLPKIEENLICSKYTDLL 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1004
d1b89a_336 a.118.1.3 (A:) Clathrin heavy chain proximal leg s 8e-06
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 31/247 (12%), Positives = 71/247 (28%), Gaps = 47/247 (19%)

Query: 526 ELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEH 585
           E + G N   ++   +    +  Y A   LY + +        L  L             
Sbjct: 7   EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLG------------ 54

Query: 586 TQKFNPESIIEYLKPLCGTDPMLVLEFSMLVLESCPTQTIELFLSGNIP-ADLVNSYLKQ 644
                 ++ ++  +           E     ++    +  ++     +  AD +   +  
Sbjct: 55  ----EYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 108

Query: 645 YSPSMQGRYLELML----AMNENSISGNLQNEMVQIYLSEVLDWYSDLSAQQKWDEKAYS 700
           Y    +G + EL+     A+        +  E+  +Y                     + 
Sbjct: 109 YQD--RGYFEELITMLEAALGLERAHMGMFTELAILYSK-------------------FK 147

Query: 701 PTRKKLLSALESISG-YNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLCVPE 759
           P  +K+   LE      N   +L+      L+ E   L  K  +++ A+   ++      
Sbjct: 148 P--QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAW 205

Query: 760 LALAYCD 766
               + D
Sbjct: 206 KEGQFKD 212

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1004
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 99.89
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 99.41
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.56
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 98.37
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.32
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 98.25
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.23
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 98.0
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 97.67
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.66
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 97.59
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 97.56
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.43
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 97.26
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 96.98
d1tbga_340 beta1-subunit of the signal-transducing G protein 96.76
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 96.67
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 96.58
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 96.56
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 96.48
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.39
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 96.32
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 95.74
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 95.63
d1tbga_340 beta1-subunit of the signal-transducing G protein 95.6
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 94.9
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 93.79
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 93.47
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 91.27
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 91.04
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 90.44
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 90.07
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 87.93
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 87.9
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 87.3
d1xipa_381 Nucleoporin NUP159 {Baker's yeast (Saccharomyces c 86.8
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 84.66
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 83.53
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 82.47
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 82.25
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 82.11
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 81.63
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 80.96
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=2.2e-22  Score=158.40  Aligned_cols=275  Identities=16%  Similarity=0.152  Sum_probs=216.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf             57865127994268999999983596789999998500299999999998630037887533224799276999840069
Q 001851          523 AALELLKGLNYCDVKICEEILQKKNHYTALLELYKSNARHREALKLLHELVEESKSNQSQDEHTQKFNPESIIEYLKPLC  602 (1004)
Q Consensus       523 ~l~~ll~~~n~c~~~~~~~~L~~~~~~~~L~~ly~~~g~~~~AL~il~~l~~~~~~~~~~~~~~~~~~~~~~~~yL~~L~  602 (1004)
                      .+..|++++|++|+..+.+.|.+.+.|++++.+|...+++++++.+|.++.+                .+.+++++++. 
T Consensus         4 ~~e~fl~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~----------------~~~avd~~~k~-   66 (336)
T d1b89a_           4 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE----------------YQAAVDGARKA-   66 (336)
T ss_dssp             HHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTC----------------HHHHHHHHHHH-
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCC----------------HHHHHHHHHHC-
T ss_conf             6999875898578999999998787799999999867899999999970315----------------99999999880-


Q ss_pred             CCCCHHHHHHCHHHHCCCCCCHHCCCCC-CCCCHHH---HHH-HHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             9980468852020110184000100125-8899477---999-7741193104425899874005878821289999999
Q 001851          603 GTDPMLVLEFSMLVLESCPTQTIELFLS-GNIPADL---VNS-YLKQYSPSMQGRYLELMLAMNENSISGNLQNEMVQIY  677 (1004)
Q Consensus       603 ~~~~~li~~~~~wll~~~p~~~~~if~~-~~l~~~~---Vl~-~L~~~~~~l~~~YLE~li~~~~~~~~~~~h~~L~~~Y  677 (1004)
                       +..+++.++..++++..+.....+... ..+.++.   ++. |-........+.|||..+..  ......+|++|+.+|
T Consensus        67 -~~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~ly  143 (336)
T d1b89a_          67 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILY  143 (336)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
T ss_conf             -88999999999997272878999999875357887899999998769859999999999757--744467999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-CCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             99999764322111014821000779999999731-18999478850089872257999998103338999999999809
Q 001851          678 LSEVLDWYSDLSAQQKWDEKAYSPTRKKLLSALES-ISGYNPEVLLKRLPADALYEERAILLGKMNQHELALSLYVHKLC  756 (1004)
Q Consensus       678 l~~i~~~~~~~~~~~~~~~~~~~~~r~kL~~fL~~-s~~Yd~~~~L~~~~~~~l~~e~~~ll~rlg~h~~AL~ili~~L~  756 (1004)
                      ...                     .+.|++.||+. |+.||++++++.|....+++|.++||+|+|+|++|+.+++....
T Consensus       144 ak~---------------------~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~  202 (336)
T d1b89a_         144 SKF---------------------KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  202 (336)
T ss_dssp             HTT---------------------CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HHH---------------------CHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCH
T ss_conf             986---------------------94999999986023599999999988748749999999855879999999997654


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf             98899999999812025899999987748999997438997761001111012467788878788643100048854310
Q 001851          757 VPELALAYCDRVYESIAHQPSGKSSGNIYLTLLQIYLNPRRTTKNFEKQITNLVSSQNTTIPKAGSVTAVKVKGGRTTKK  836 (1004)
Q Consensus       757 D~~~Ae~YC~~~~~~~~~~~~~~~~~~l~~~Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  836 (1004)
                      |...++.|+.-+...        .++++|...+.-|++..                                        
T Consensus       203 ~~~~~~~f~e~~~k~--------~N~e~~~~~i~~yL~~~----------------------------------------  234 (336)
T d1b89a_         203 DAWKEGQFKDIITKV--------ANVELYYRAIQFYLEFK----------------------------------------  234 (336)
T ss_dssp             TTCCHHHHHHHHHHC--------SSTHHHHHHHHHHHHHC----------------------------------------
T ss_pred             HHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHCC----------------------------------------
T ss_conf             456699999999724--------78699999999999759----------------------------------------


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHCHHHHHHHHHH
Q ss_conf             00001122246799988899999985433446873013899999982003899920011247754332212988999999
Q 001851          837 IASIEGAEDMRMSPSSTDSGRSDGDAEEFSEEGDSTIMIDQVLDLLSQRWDRINGAQALKLLPRETKLQNLLPFLEPLLR  916 (1004)
Q Consensus       837 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~~~id~~~vL~~lP~~~~i~~l~~fl~~~l~  916 (1004)
                                                            +..+.++|...+..+|+..+++.++....+..+.+||.....
T Consensus       235 --------------------------------------p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~  276 (336)
T d1b89a_         235 --------------------------------------PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN  276 (336)
T ss_dssp             --------------------------------------GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred             --------------------------------------HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             --------------------------------------999999999856579989999999853880779999999998


Q ss_pred             HHHHHHHH
Q ss_conf             56889779
Q 001851          917 KSSEAHRN  924 (1004)
Q Consensus       917 ~~~~~~~~  924 (1004)
                      .......+
T Consensus       277 ~n~~~vn~  284 (336)
T d1b89a_         277 HNNKSVNE  284 (336)
T ss_dssp             TCCHHHHH
T ss_pred             CCHHHHHH
T ss_conf             18099999
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure