Citrus Sinensis ID: 001886
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1000 | 2.2.26 [Sep-21-2011] | |||||||
| B6EUA9 | 958 | Pre-mRNA-processing prote | yes | no | 0.93 | 0.970 | 0.501 | 0.0 | |
| F4JCC1 | 992 | Pre-mRNA-processing prote | no | no | 0.945 | 0.952 | 0.472 | 0.0 | |
| O75400 | 957 | Pre-mRNA-processing facto | yes | no | 0.632 | 0.660 | 0.320 | 7e-65 | |
| Q9R1C7 | 953 | Pre-mRNA-processing facto | yes | no | 0.625 | 0.655 | 0.319 | 9e-63 | |
| Q80W14 | 870 | Pre-mRNA-processing facto | no | no | 0.429 | 0.493 | 0.319 | 2e-40 | |
| Q6NWY9 | 871 | Pre-mRNA-processing facto | no | no | 0.395 | 0.453 | 0.327 | 4e-38 | |
| P34600 | 724 | WW domain-containing prot | yes | no | 0.431 | 0.595 | 0.276 | 1e-35 | |
| O14176 | 695 | Pre-mRNA-processing prote | yes | no | 0.416 | 0.598 | 0.262 | 4e-35 | |
| Q9LT25 | 835 | Pre-mRNA-processing prote | no | no | 0.51 | 0.610 | 0.248 | 3e-23 | |
| O14776 | 1098 | Transcription elongation | no | no | 0.297 | 0.270 | 0.278 | 1e-19 |
| >sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1 | Back alignment and function desciption |
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Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1022 (50%), Positives = 680/1022 (66%), Gaps = 92/1022 (9%)
Query: 1 MANNAPYS-GAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLM 59
MANN P S G QFRP VP Q Q +VP ASQ F P G + + P + Q QL
Sbjct: 1 MANNPPQSSGTQFRPMVPGQQGQHFVPAASQPFHPYGHVPPNVQSQPPQYSQPIQQQQL- 59
Query: 60 HQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARP 119
P RPGQP H Q V +P Q + + SGS+ PQ N T +A+S P
Sbjct: 60 --FPVRPGQPV--HITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMTGFATS----GPP 111
Query: 120 FSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPS-NPAGGQLGVSISQSTS--TPLQ 176
FS+ YTF PSSY Q Q T V QP SQMHV PA V ++QSTS +P+Q
Sbjct: 112 FSSPYTFVPSSYPQQQPTSLV------QPNSQMHVAGVPPAANTWPVPVNQSTSLVSPVQ 165
Query: 177 HTHEQ--VAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLEL 234
T +Q VA +T P P+SA +DW EHT+ADGR+YYYNKRT+QS W+KPLEL
Sbjct: 166 QTGQQTPVAVSTDP---GNLTPQSA----SDWQEHTSADGRKYYYNKRTKQSNWEKPLEL 218
Query: 235 MTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEA 294
MTP+ERADA++ WKEFT+P+G+KYYYNKVTK+SKW+IP++LKLAREQA+ AS K + SEA
Sbjct: 219 MTPLERADASTVWKEFTTPEGKKYYYNKVTKESKWTIPEDLKLAREQAQLASEKTSLSEA 278
Query: 295 SPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPV 354
S P S AS ++D++ STV V S S + ++S IQ + + P
Sbjct: 279 -------GSTPLSHHAAS-SSDLAVSTVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPS 330
Query: 355 IASSVAVSADGIQTTVDALTPMISVSSSVGD--AVTVNTDTETKNYSSNLPASNVVAAAV 412
+A P+ S ++ D A T+ D N SS + A
Sbjct: 331 VA------------------PVTPTSGAISDTEATTIKGD----NLSSRGADDSNDGATA 368
Query: 413 EVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWS 472
+ E +EM +V G+ +K +E + YA K EAK AFK+LLES NV SDW+
Sbjct: 369 QNNEAENKEM---SVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWT 425
Query: 473 WDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEES 532
W+Q ++ I++D+RYGAL+TLGERKQAFNEYLGQRKK EAEERR + KKARE++ KMLEE
Sbjct: 426 WEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEEC 485
Query: 533 VELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIE 592
EL+SS +WSKA+++FEND+RFKA+DR RDR DLFD+++ EL +KER KA EE RQ++ +
Sbjct: 486 EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMAD 545
Query: 593 YRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQ 652
YR+FLE+CD+IKA TQWRK+QDRLE D+RCS LEKIDRL F+EYI+DLEKEEEE ++++
Sbjct: 546 YRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVE 605
Query: 653 KEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPK 712
KE +RRAERKNRD FR LLE VA+G LTAKT+W DYC+++KDL Y AVASNTSGSTPK
Sbjct: 606 KEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPK 665
Query: 713 DLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIK 772
DLFEDV EEL+KQY EDK+ +KDA+K +KIS+ S+W FEDFK++I ED+++ ISD+N+K
Sbjct: 666 DLFEDVTEELEKQYHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLK 725
Query: 773 LVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIK-ISASSAWEDCIQLFEGSREFSSI 831
L++DDL+ RVKEKEEKEA+K +RLA++F LL + K I+ +S WED QL E S+E+ SI
Sbjct: 726 LIYDDLVGRVKEKEEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSI 785
Query: 832 GEESICREIFDEYVTQLKEQAKENERKRKEEK------------SKKEKEREDRDRKKQK 879
G+ES+ + +F+EY+T L+E+AKE ERKR EEK K + + ++++
Sbjct: 786 GDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKERERE 845
Query: 880 QGREKDRAREREKEDHSKKDGAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQD------ 933
+ + K+R++ E + + D +E D+ KR GKD D+KHR+RHH+ D
Sbjct: 846 KEKGKERSKREESDGETAMDVSEGHKDE------KRKGKDRDRKHRRRHHNNSDEDVSSD 899
Query: 934 SLDENEKDRSKNSHRSDRKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGE 993
D +E +S H +DRKKSR+HA++PES++E+RHKR K++ SR++G+ +ELEDGE
Sbjct: 900 RDDRDESKKSSRKHGNDRKKSRKHANSPESESENRHKRQKKE---SSRRSGN-DELEDGE 955
Query: 994 VG 995
VG
Sbjct: 956 VG 957
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Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Interacts with both the phosphorylated and the dephosphorylated forms of the CTD domain of the RPB1 subunit of the RNA polymerase II. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B PE=1 SV=1 | Back alignment and function description |
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| >sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1 | Back alignment and function description |
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| >sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b PE=2 SV=2 | Back alignment and function description |
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| >sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B PE=1 SV=1 | Back alignment and function description |
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| >sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans GN=ZK1098.1 PE=1 SV=2 | Back alignment and function description |
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| >sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C PE=1 SV=1 | Back alignment and function description |
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| >sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1000 | ||||||
| 255562210 | 956 | protein binding protein, putative [Ricin | 0.937 | 0.980 | 0.629 | 0.0 | |
| 224060893 | 972 | predicted protein [Populus trichocarpa] | 0.931 | 0.957 | 0.585 | 0.0 | |
| 356574333 | 1072 | PREDICTED: pre-mRNA-processing factor 40 | 0.962 | 0.897 | 0.575 | 0.0 | |
| 302142164 | 1030 | unnamed protein product [Vitis vinifera] | 0.965 | 0.936 | 0.582 | 0.0 | |
| 356534266 | 1017 | PREDICTED: pre-mRNA-processing factor 40 | 0.967 | 0.950 | 0.571 | 0.0 | |
| 359492532 | 1020 | PREDICTED: pre-mRNA-processing factor 40 | 0.944 | 0.925 | 0.572 | 0.0 | |
| 449484509 | 983 | PREDICTED: pre-mRNA-processing protein 4 | 0.943 | 0.959 | 0.551 | 0.0 | |
| 224127228 | 1019 | predicted protein [Populus trichocarpa] | 0.979 | 0.960 | 0.541 | 0.0 | |
| 356554026 | 1002 | PREDICTED: pre-mRNA-processing factor 40 | 0.972 | 0.970 | 0.528 | 0.0 | |
| 255537980 | 970 | protein binding protein, putative [Ricin | 0.947 | 0.976 | 0.545 | 0.0 |
| >gi|255562210|ref|XP_002522113.1| protein binding protein, putative [Ricinus communis] gi|223538712|gb|EEF40313.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 635/1009 (62%), Positives = 746/1009 (73%), Gaps = 72/1009 (7%)
Query: 3 NNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQL 62
N P QFRP VPA QSQQ++PVAS HF P G+GV +MNAGLPSQ Q QFP + Q
Sbjct: 6 NFVPPMPMQFRPVVPAQQSQQFIPVASPHFQPVGRGVPLMNAGLPSQPPQSQFPPSVQQF 65
Query: 63 PARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSA 122
P+RPGQP P QV+ LPNAQ + H+ SGSSLP +V +YA LGG P S+
Sbjct: 66 PSRPGQPGHGPPPS--QVISLPNAQANRHVTSGSSLPPPSVPTSINYAPGLGGPGAPLSS 123
Query: 123 SYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVS-ISQSTS--TPLQHTH 179
SYTF PSSYGQP V NT +QYQP+SQM PS PAGG G S ++QS + TP+Q
Sbjct: 124 SYTFVPSSYGQP--PVAANTVSQYQPISQMRPPSIPAGGLAGSSSVNQSITPVTPMQLNG 181
Query: 180 EQ--VAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTP 237
EQ V + PT K E DW EH AA+GRRYYYNKRTRQS+W+KP ELMTP
Sbjct: 182 EQSSVTNDLHPT-------KPNEETTMDWKEHLAANGRRYYYNKRTRQSSWEKPFELMTP 234
Query: 238 IERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPN 297
IERADA++DWKEF SP+GR YYYNK TKQSKW IP+ELKLAR++ E+AS Q++ N
Sbjct: 235 IERADASTDWKEFASPEGRTYYYNKTTKQSKWEIPEELKLARKRLEKASLVEAQADTLAN 294
Query: 298 LQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIAS 357
VP S A AD SS T QV SSPV V P+ AA +Q S S V+AS
Sbjct: 295 SHVPAFVPPSVDKAPSVADASSLTAQVTPSSPVPVTPVAAAVDLQSQPASESPGLAVMAS 354
Query: 358 SVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQ 417
S+ ++D +QTT + VS+ G + VN+
Sbjct: 355 SLTSNSDEVQTTENI------VSTVSGRSEKVNS-------------------------- 382
Query: 418 ETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAM 477
IG +EEK V QE L Y +KLEAKNAFKALLESA+VGSDW+WDQAM
Sbjct: 383 --------------IG--IEEKIVSQEPLTYTDKLEAKNAFKALLESASVGSDWTWDQAM 426
Query: 478 QAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTS 537
+ IINDRRYGAL+TLGERKQAFNEYL Q+KKQ+AEERR K KKARE++K MLEES ELTS
Sbjct: 427 RVIINDRRYGALRTLGERKQAFNEYLSQKKKQDAEERRSKQKKAREEFKNMLEESKELTS 486
Query: 538 STRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFL 597
+ RWSKAVT+FENDERFKA++RERDRRD+FD L+EL KERAKAQEER+++++EYRQFL
Sbjct: 487 TMRWSKAVTLFENDERFKAVERERDRRDIFDSFLQELGDKERAKAQEERKRNIMEYRQFL 546
Query: 598 ESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLR 657
ESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIF++Y+ DLEKEEEEQRKIQKE R
Sbjct: 547 ESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQRKIQKEEQR 606
Query: 658 RAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFED 717
+AERKNRDEFRKLLE VA+GT+TAKTHWRDY +KVKDL AY+AVASNTSGSTPKDLFED
Sbjct: 607 KAERKNRDEFRKLLEEHVAAGTMTAKTHWRDYYLKVKDLPAYLAVASNTSGSTPKDLFED 666
Query: 718 VAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDD 777
V EEL+KQY EDK+RIKDAVKLKK++++STWT +D KA+I+ED++SP ISD+N+K+VFD+
Sbjct: 667 VLEELEKQYHEDKSRIKDAVKLKKVAMASTWTLDDLKAAIVEDISSPSISDMNLKIVFDE 726
Query: 778 LLERVKEKEEKEAKKRKRLADDFFALLCSIK-ISASSAWEDCIQLFEGSREFSSIGEESI 836
LLER KEKEEK+AKKRKRLADDF LL S K I+ASS WE C +LFEGSREFSSI EESI
Sbjct: 727 LLERAKEKEEKDAKKRKRLADDFLNLLHSTKDITASSKWESCKELFEGSREFSSINEESI 786
Query: 837 CREIFDEYVTQLKEQAKENERKRKEEKSKKEKEREDRDRKKQKQGREKDRAREREKEDHS 896
C++IF+EY+ QLKE AKENERKRKEEK+KKEKERE++DR+K K R+KDR EREKE H
Sbjct: 787 CQDIFEEYIAQLKEHAKENERKRKEEKAKKEKEREEKDRRKAKHRRDKDRGHEREKE-HM 845
Query: 897 KKD----GAESDHDDSAEYENKRSGKDSDKKHRKRHHSGQDSLDENEKD--RSKNSHRSD 950
KK+ G+ DD +NKRS DS+KK RKRHH +D L+E+EKD +S + H SD
Sbjct: 846 KKEEADTGSADTTDDHFNNDNKRSVNDSNKKQRKRHHDAEDDLNESEKDRSKSSHRHSSD 905
Query: 951 RKKSRRHASTPESDNESRHKRHKRDHRNGSRKNGDHEELEDGEVGLEGE 999
KKS+ HASTP+SD ESRHKRHKRDHRNGSR+ GDHEELEDGE G +GE
Sbjct: 906 HKKSKWHASTPDSDGESRHKRHKRDHRNGSRRYGDHEELEDGEFGEDGE 954
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060893|ref|XP_002300284.1| predicted protein [Populus trichocarpa] gi|222847542|gb|EEE85089.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356574333|ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|302142164|emb|CBI19367.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356534266|ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|359492532|ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449484509|ref|XP_004156902.1| PREDICTED: pre-mRNA-processing protein 40A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224127228|ref|XP_002320019.1| predicted protein [Populus trichocarpa] gi|222860792|gb|EEE98334.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356554026|ref|XP_003545351.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|255537980|ref|XP_002510055.1| protein binding protein, putative [Ricinus communis] gi|223550756|gb|EEF52242.1| protein binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1000 | ||||||
| TAIR|locus:2091171 | 992 | PRP40B "pre-mRNA-processing pr | 0.738 | 0.743 | 0.414 | 2.9e-159 | |
| TAIR|locus:2194894 | 958 | PRP40A "pre-mRNA-processing pr | 0.718 | 0.749 | 0.400 | 1.6e-128 | |
| UNIPROTKB|F1RQH2 | 957 | PRPF40A "Uncharacterized prote | 0.739 | 0.772 | 0.270 | 8.7e-64 | |
| UNIPROTKB|O75400 | 957 | PRPF40A "Pre-mRNA-processing f | 0.744 | 0.777 | 0.262 | 5.8e-63 | |
| UNIPROTKB|G3MZC7 | 958 | PRPF40A "Uncharacterized prote | 0.738 | 0.770 | 0.268 | 5.9e-63 | |
| MGI|MGI:1860512 | 953 | Prpf40a "PRP40 pre-mRNA proces | 0.731 | 0.767 | 0.265 | 6e-62 | |
| RGD|1311401 | 953 | Prpf40a "PRP40 pre-mRNA proces | 0.731 | 0.767 | 0.265 | 1.3e-61 | |
| DICTYBASE|DDB_G0283543 | 681 | prp40 "FF domain-containing pr | 0.402 | 0.590 | 0.290 | 2.5e-56 | |
| ZFIN|ZDB-GENE-030131-274 | 851 | prpf40a "PRP40 pre-mRNA proces | 0.322 | 0.378 | 0.322 | 7.1e-56 | |
| FB|FBgn0031492 | 806 | CG3542 [Drosophila melanogaste | 0.399 | 0.495 | 0.275 | 2.1e-49 |
| TAIR|locus:2091171 PRP40B "pre-mRNA-processing protein 40B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1430 (508.4 bits), Expect = 2.9e-159, Sum P(2) = 2.9e-159
Identities = 319/770 (41%), Positives = 435/770 (56%)
Query: 91 HIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMS 150
H+ G P + P +S L +P+ + +G P+ + + Y+
Sbjct: 99 HVPLG---PPTLISQPNVSIASGTSLHQPYVQTPDIGMPGFGGPRALFSYPSATSYEGS- 154
Query: 151 QMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTM----ASTFQPKSAEVAQTDW 206
VP G + Q S + HT + + PT A+ +P ++ A TDW
Sbjct: 155 --RVPPQVTGPSIHSQAQQRAS--IIHTSAESSIMN-PTFEQPKAAFLKPLPSQKALTDW 209
Query: 207 IEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQ 266
+EHT+ADGR+Y++NKRT++STW+KP+ELMT ERADA +DWKE +SPDGRKYYYNK+TKQ
Sbjct: 210 VEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADARTDWKEHSSPDGRKYYYNKITKQ 269
Query: 267 SKWSIPDELKLAREQAERASTKGTQSE----ASPNLQTSNSVPSSAVTASPNADXXXXXX 322
S W++P+E+K+ REQAE AS +G +E AS L S++ ++A T P+
Sbjct: 270 STWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTAAPTGLPSQTSTSEGV 329
Query: 323 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXX---XXXXDGIQTTVDALTPMISV 379
P DG+ V + V
Sbjct: 330 EKLTLTSDLKQPASVPGSSSPVENVDRVQMSADETSQLCDTSETDGLSVPVTETSAATLV 389
Query: 380 SSSVGDAVTVNTDTETKNYSSNLPASNXXXXXXXXXXXXXXXMRKDAVTGEKIGDELEEK 439
D ++V + S ++ N +K V EK+ + EEK
Sbjct: 390 EK---DEISVGNSGD----SDDMSTKNANQGSGSGPKES----QKPMVESEKVESQTEEK 438
Query: 440 TVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAF 499
+ QE ++ NKLEA + FK+LL+SA VGSDW+W+QAM+ IIND+RYGAL+TLGERKQAF
Sbjct: 439 QIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGERKQAF 498
Query: 500 NEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKAXXX 559
NE+L Q K+ EER + KK ED+K+MLEE VELT STRWSK VTMFE+DERFKA
Sbjct: 499 NEFLLQTKRAAEEERLARQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFKALER 558
Query: 560 XXXXXXXXXXXXXXXXQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEAD 619
+K R KA E+R++++IEY++FLESC+FIK ++QWRKVQDRLE D
Sbjct: 559 EKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVD 618
Query: 620 ERCSRLEKIDRLEIFXXXXXXXXXXXXXXXXXXXXVLRRAERKNRDEFRKLLEGDVASGT 679
ERCSRLEKID+LEIF L++ ERK+RDEF LL+ +A+G
Sbjct: 619 ERCSRLEKIDQLEIFQEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHIATGE 678
Query: 680 LTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKL 739
LTAKT WRDY MKVKDL Y A+ASN+SG+TPKDLFED E+L+K+ E K++IKD +KL
Sbjct: 679 LTAKTIWRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHELKSQIKDVLKL 738
Query: 740 KKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFXXXXXXXXXXXXXXXXXXXXXXXX 799
+K++LS+ TF++FK SI ED+ P I DV +KLVF
Sbjct: 739 RKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKEEKEARKQTRQTEK 798
Query: 800 FFALLCSIK-ISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQL 848
+L S K I+ASS+WE+ L EGS + S+IG+ES + F++YV+ L
Sbjct: 799 LVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYVSLL 848
|
|
| TAIR|locus:2194894 PRP40A "pre-mRNA-processing protein 40A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RQH2 PRPF40A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O75400 PRPF40A "Pre-mRNA-processing factor 40 homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G3MZC7 PRPF40A "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1860512 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1311401 Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0283543 prp40 "FF domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-030131-274 prpf40a "PRP40 pre-mRNA processing factor 40 homolog A (yeast)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0031492 CG3542 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B6EUA9 | PR40A_ARATH | No assigned EC number | 0.5019 | 0.93 | 0.9707 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
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 |
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 |
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 | estExt_fgenesh4_pm.C_LG_I1075 | hypothetical protein (972 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1000 | |||
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 5e-28 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 2e-16 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 1e-12 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 2e-12 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 3e-12 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 9e-09 | |
| cd00201 | 31 | cd00201, WW, Two conserved tryptophans domain; als | 1e-08 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 2e-08 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 4e-08 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 5e-08 | |
| smart00456 | 33 | smart00456, WW, Domain with 2 conserved Trp (W) re | 6e-08 | |
| pfam00397 | 30 | pfam00397, WW, WW domain | 9e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 9e-06 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 1e-05 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 1e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-05 | |
| smart00441 | 55 | smart00441, FF, Contains two conserved F residues | 3e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 1e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 2e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PRK12678 | 672 | PRK12678, PRK12678, transcription termination fact | 3e-04 | |
| TIGR01642 | 509 | TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la | 4e-04 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 5e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.001 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.001 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 0.001 | |
| pfam01846 | 50 | pfam01846, FF, FF domain | 0.002 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 0.002 | |
| PRK10856 | 331 | PRK10856, PRK10856, cytoskeletal protein RodZ; Pro | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.003 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 0.003 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.003 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.003 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 0.003 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.003 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.003 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 0.003 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 0.003 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.003 | |
| COG5104 | 590 | COG5104, PRP40, Splicing factor [RNA processing an | 0.004 |
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Score = 120 bits (301), Expect = 5e-28
Identities = 95/430 (22%), Positives = 184/430 (42%), Gaps = 26/430 (6%)
Query: 451 KLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
K EA+ F +L+ V S W +A++ + + R + RK F +Y ++K +
Sbjct: 145 KEEAEKEFITMLKENQVDSTWPIFRAIEELRDPRYWMVDTDPLWRKDLFKKYFENQEKDQ 204
Query: 511 AEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDH 570
EE K +K ++ KML + + T W ++F + ++ E+ +R F +
Sbjct: 205 REEEENKQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKY 264
Query: 571 LEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSR------ 624
++L E+ + L + L S + W ++ R +
Sbjct: 265 KDKLGCYEKYVGKHMGGTALGRLEEVLRSLGS-ETFIIWLLNHYVFDSVVRYLKNKEMKP 323
Query: 625 LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKT 684
L++ D L F Y+ LEKE + +K + R +RDEFR LL + G + +
Sbjct: 324 LDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTLLRKLYSEGKIYYRM 383
Query: 685 HWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISL 744
W++ +KD ++ + T GS+P DLF D +L+ Y + + + +IS
Sbjct: 384 KWKNAYPLIKDDPRFLNLLGRT-GSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISP 442
Query: 745 SSTWTFEDFKASILE-----DVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLAD- 798
+ ++ +I E ++ + +I L+ D L+++ EK +++ + +R+ +
Sbjct: 443 TDRRAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQ 502
Query: 799 --DFFALLCSIKISAS-----SAWEDCIQLFEGSREFSSIGEE-SICREIFD----EYVT 846
+F LL + + S W+ + S E+ ++G+E +I R+IF+ E
Sbjct: 503 KKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFKPESSA 562
Query: 847 QLKEQAKENE 856
E A N
Sbjct: 563 PTAESATANL 572
|
Length = 590 |
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >gnl|CDD|215899 pfam00397, WW, WW domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|128718 smart00441, FF, Contains two conserved F residues | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
| >gnl|CDD|202007 pfam01846, FF, FF domain | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|227435 COG5104, PRP40, Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1000 | |||
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 100.0 | |
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 100.0 | |
| KOG0155 | 617 | consensus Transcription factor CA150 [Transcriptio | 100.0 | |
| COG5104 | 590 | PRP40 Splicing factor [RNA processing and modifica | 99.94 | |
| KOG0152 | 463 | consensus Spliceosomal protein FBP11/Splicing fact | 99.62 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 99.14 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 99.02 | |
| PF01846 | 51 | FF: FF domain; InterPro: IPR002713 The FF domain m | 98.89 | |
| smart00441 | 55 | FF Contains two conserved F residues. A novel moti | 98.82 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.42 | |
| PF00397 | 31 | WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp | 98.32 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.21 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 98.16 | |
| smart00456 | 32 | WW Domain with 2 conserved Trp (W) residues. Also | 98.08 | |
| cd00201 | 31 | WW Two conserved tryptophans domain; also known as | 97.97 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 97.79 | |
| KOG4271 | 1100 | consensus Rho-GTPase activating protein [Signal tr | 97.74 | |
| KOG1891 | 271 | consensus Proline binding protein WW45 [General fu | 97.58 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 97.58 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.28 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 97.17 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 97.1 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 96.98 | |
| KOG3259 | 163 | consensus Peptidyl-prolyl cis-trans isomerase [Pos | 96.68 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 96.14 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 95.89 | |
| KOG4592 | 728 | consensus Uncharacterized conserved protein [Funct | 95.83 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.69 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 95.32 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 95.3 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 94.77 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 94.35 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 94.32 | |
| KOG1891 | 271 | consensus Proline binding protein WW45 [General fu | 94.27 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 94.04 | |
| KOG1847 | 878 | consensus mRNA splicing factor [RNA processing and | 93.94 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 93.55 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 92.99 | |
| KOG0940 | 358 | consensus Ubiquitin protein ligase RSP5/NEDD4 [Pos | 92.93 | |
| KOG2236 | 483 | consensus Uncharacterized conserved protein [Funct | 92.84 | |
| KOG0260 | 1605 | consensus RNA polymerase II, large subunit [Transc | 92.66 | |
| KOG0144 | 510 | consensus RNA-binding protein CUGBP1/BRUNO (RRM su | 92.44 | |
| KOG1985 | 887 | consensus Vesicle coat complex COPII, subunit SEC2 | 92.03 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 91.25 | |
| PHA03247 | 3151 | large tegument protein UL36; Provisional | 91.22 | |
| PF09770 | 808 | PAT1: Topoisomerase II-associated protein PAT1; In | 90.4 | |
| KOG0150 | 336 | consensus Spliceosomal protein FBP21 [RNA processi | 89.58 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 88.77 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 88.75 | |
| KOG1830 | 518 | consensus Wiskott Aldrich syndrome proteins [Cytos | 88.52 | |
| KOG1830 | 518 | consensus Wiskott Aldrich syndrome proteins [Cytos | 88.06 | |
| PF09770 | 808 | PAT1: Topoisomerase II-associated protein PAT1; In | 87.41 | |
| KOG3582 | 856 | consensus Mlx interactors and related transcriptio | 86.94 | |
| KOG4672 | 487 | consensus Uncharacterized conserved low complexity | 86.84 | |
| KOG4274 | 742 | consensus Positive cofactor 2 (PC2), subunit of a | 86.7 | |
| KOG4217 | 605 | consensus Nuclear receptors of the nerve growth fa | 86.66 | |
| KOG2236 | 483 | consensus Uncharacterized conserved protein [Funct | 86.19 | |
| KOG3209 | 984 | consensus WW domain-containing protein [General fu | 85.52 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 84.13 | |
| KOG1847 | 878 | consensus mRNA splicing factor [RNA processing and | 83.99 | |
| KOG4368 | 757 | consensus Predicted RNA binding protein, contains | 83.98 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 83.98 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 82.22 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 81.7 | |
| KOG3794 | 453 | consensus CBF1-interacting corepressor CIR and rel | 81.42 | |
| KOG2199 | 462 | consensus Signal transducing adaptor protein STAM/ | 81.35 | |
| KOG3209 | 984 | consensus WW domain-containing protein [General fu | 80.97 | |
| KOG3895 | 488 | consensus Synaptic vesicle protein Synapsin [Signa | 80.54 |
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-70 Score=596.26 Aligned_cols=528 Identities=26% Similarity=0.440 Sum_probs=427.3
Q ss_pred CcCCCCCCcEEEEcCCCCeeeeccCcccccccCCCCCCCccccccCCCCcEEeeCCCCCeEeeeCCCCcccccCChHHHH
Q 001886 198 SAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKL 277 (1000)
Q Consensus 198 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~ssWekP~~~~~~~e~~~~~~~W~e~~~~~G~~YyyN~~T~eS~We~P~~~~~ 277 (1000)
++....+.|.+.+++|||+||||.+||.|+||||.+++...|..+...+|+++.|.||++||||..|.||+|.+|.+.+.
T Consensus 9 ~s~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~~l~~~~Wke~~TadGkvyyyN~~TREs~W~iP~e~Kk 88 (590)
T COG5104 9 ASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEEDLDVDPWKECRTADGKVYYYNSITRESRWKIPPERKK 88 (590)
T ss_pred CcccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHhhhchhhHHHHhhcCCceEEecCccccccccCChhhhc
Confidence 34566789999999999999999999999999999999988888889999999999999999999999999999999764
Q ss_pred HHHHHHHhhccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCccccccccCCCCcccccccccccccccccCCCCCccccc
Q 001886 278 AREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIAS 357 (1000)
Q Consensus 278 ~~e~~e~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~p~~~~~~~~~~~~~~ 357 (1000)
...-++ +. . ... |...+..+.+ ++
T Consensus 89 Ve~~~e----QK-~--------~~~-----------------S~i~~ngn~~------------------------ai-- 112 (590)
T COG5104 89 VEPIAE----QK-H--------DER-----------------SMIGGNGNDM------------------------AI-- 112 (590)
T ss_pred cCcHHh----hh-h--------HHH-----------------HHhccCCCcc------------------------cc--
Confidence 211000 00 0 000 0000000000 00
Q ss_pred cccccccCccccccccccccccCCCcCCcccccccccccccCCCCCcchhhhhhhcCchhhHHHhhhhcccccccCChhh
Q 001886 358 SVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELE 437 (1000)
Q Consensus 358 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~eE~~k~~~~~~~~~~~~e 437 (1000)
.++. .. .| .-..+..+..| .++..+
T Consensus 113 -----t~~e-~~----eP------------~~~~~~~~sQy--------------------------------~~~st~- 137 (590)
T COG5104 113 -----TDHE-TS----EP------------KYLLGRLMSQY--------------------------------GITSTK- 137 (590)
T ss_pred -----cccc-cc----cc------------hhHHHHHHHhh--------------------------------cchhHH-
Confidence 0000 00 00 00000011111 001000
Q ss_pred hhhhhchhhccCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCC-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 438 EKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKT-LGERKQAFNEYLGQRKKQEAEERRF 516 (1000)
Q Consensus 438 ~k~~~~e~~~~~tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~-~~ERKqlFeeYl~~~~k~Ekeekr~ 516 (1000)
..+.-.|+|+|+.+|+.||++++|+|+|+|.++++.+ .|||||.|.+ +.+||.+|++|+.+..+.+.++...
T Consensus 138 ------~~v~r~T~E~AEk~F~~~L~e~qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n 210 (590)
T COG5104 138 ------DAVYRLTKEEAEKEFITMLKENQVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEEN 210 (590)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 1222358999999999999999999999999999999 8999998875 5799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 517 KLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQF 596 (1000)
Q Consensus 517 k~kkare~F~~lLee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~l 596 (1000)
++.+.+++|.+||..+..|.+||.|.+|..+|.++|.|+++.++.+.+++|++|++.|-.-+++-.+..+..++.+|..+
T Consensus 211 ~~~k~~~ef~kml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~ 290 (590)
T COG5104 211 KQRKYINEFCKMLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEV 290 (590)
T ss_pred HHHHHHHHHHHHhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred HhhccccCCCCcHHHHHHHhhhhHhhhc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 597 LESCDFIKASTQWRKVQDRLEADERCSR------LEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKL 670 (1000)
Q Consensus 597 L~e~~~It~~TtW~ev~~~L~~D~Rf~~------L~~~DrlelFed~I~eLekeeeE~k~~~k~~~rR~eRK~Rd~Fk~L 670 (1000)
|.+++ ....++|.-.+-.|..++||.. |+..|.|--|.+|++.||++.--.....|.+..+.+|++||+|+.|
T Consensus 291 lr~l~-~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~e~k~~~~~~~r~~rd~FrtL 369 (590)
T COG5104 291 LRSLG-SETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLSAIEERKAAAAQNARHHRDEFRTL 369 (590)
T ss_pred HHhcC-cccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99987 4567899977777888888854 5567888889999999999987777667777889999999999999
Q ss_pred HhhhhcCCcccCCCcHHHHHHHHhhhHHHHHHhhCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCCCH
Q 001886 671 LEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTF 750 (1000)
Q Consensus 671 L~el~~~g~I~a~T~W~e~~~~ikdD~rf~al~~g~~gStpldLF~D~VeeL~k~~~e~K~~ikd~lk~~~i~i~s~wt~ 750 (1000)
|.++.-.|+|+..++|+++||+|++||||++|+ |++||+|||||+|+|.+|+..|...++.+.+++..++|.++.+...
T Consensus 370 Lr~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~~~v 448 (590)
T COG5104 370 LRKLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDRRAV 448 (590)
T ss_pred HHHhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccccch
Confidence 999999999999999999999999999999997 8999999999999999999999999999999988899988877777
Q ss_pred HHHHHHhh-----hcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhc--C--CCCCCcHHH
Q 001886 751 EDFKASIL-----EDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADD----FFALLCSI--K--ISASSAWED 817 (1000)
Q Consensus 751 eef~~~l~-----ed~r~~~ls~~~lk~iFe~lierlkEKeeee~rkrrR~~~~----F~~lLk~~--~--I~~~stWed 817 (1000)
+++.+.+. .+..|..|+.+++.+|.+.+|...-|+-.......||+++. |-.||..+ + -...++|+-
T Consensus 449 dei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~qr~EkIqqKl~N~R~~le~~K~~~~lL~q~t~~~t~k~k~st~D~ 528 (590)
T COG5104 449 DEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQRNEKIQQKLQNERRILEQKKHYFWLLLQRTYTKTGKPKPSTWDL 528 (590)
T ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCCCCcchHHH
Confidence 77665554 44567888899999999999887666544444555666555 44455443 2 466799999
Q ss_pred HHHHhcCcccccccCch-hHHHHHHHHHH
Q 001886 818 CIQLFEGSREFSSIGEE-SICREIFDEYV 845 (1000)
Q Consensus 818 v~~~i~~~~ey~aL~~E-~~r~~lF~e~i 845 (1000)
+-..|....||++|++| ..|+.+|++|-
T Consensus 529 ~~k~L~Es~E~k~~~DE~N~~Rq~fED~k 557 (590)
T COG5104 529 ASKELGESLEYKALGDEDNIRRQIFEDFK 557 (590)
T ss_pred HHHHHhHhHHHHHhcchhHHHHHhhhcCC
Confidence 99999999999999874 66889999884
|
|
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0155 consensus Transcription factor CA150 [Transcription] | Back alignment and domain information |
|---|
| >COG5104 PRP40 Splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction [] | Back alignment and domain information |
|---|
| >smart00441 FF Contains two conserved F residues | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >smart00456 WW Domain with 2 conserved Trp (W) residues | Back alignment and domain information |
|---|
| >cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1891 consensus Proline binding protein WW45 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4592 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1891 consensus Proline binding protein WW45 [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG1847 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
| >KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2236 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0260 consensus RNA polymerase II, large subunit [Transcription] | Back alignment and domain information |
|---|
| >KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
| >PHA03247 large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] | Back alignment and domain information |
|---|
| >KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division [] | Back alignment and domain information |
|---|
| >KOG3582 consensus Mlx interactors and related transcription factors [Transcription] | Back alignment and domain information |
|---|
| >KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription] | Back alignment and domain information |
|---|
| >KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription] | Back alignment and domain information |
|---|
| >KOG2236 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3209 consensus WW domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1847 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3794 consensus CBF1-interacting corepressor CIR and related proteins [Transcription] | Back alignment and domain information |
|---|
| >KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3209 consensus WW domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1000 | ||||
| 2l5f_A | 92 | Solution Structure Of The Tandem Ww Domains From Hy | 1e-16 | ||
| 2kzg_A | 71 | The Structure Of An Ff Domain From Human HypaFBP11 | 4e-10 | ||
| 1o6w_A | 75 | Solution Structure Of The Prp40 Ww Domain Pair Of T | 6e-10 | ||
| 2lks_A | 50 | Ff11-60 Length = 50 | 3e-07 | ||
| 2jxw_A | 75 | Solution Structure Of The Tandem Ww Domains Of Fbp2 | 2e-06 | ||
| 2l9v_A | 49 | Nmr Structure Of The Ff Domain L24a Mutant's Foldin | 1e-05 | ||
| 1e0l_A | 37 | Fbp28ww Domain From Mus Musculus Length = 37 | 6e-05 | ||
| 2nnt_A | 40 | General Structural Motifs Of Amyloid Protofilaments | 1e-04 | ||
| 1ywi_A | 41 | Structure Of The Fbp11ww1 Domain Complexed To The P | 2e-04 | ||
| 1ywi_A | 41 | Structure Of The Fbp11ww1 Domain Complexed To The P | 5e-04 | ||
| 1zr7_A | 30 | Solution Structure Of The First Ww Domain Of Fbp11 | 5e-04 |
| >pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11 Length = 92 | Back alignment and structure |
|
| >pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate At Atomic Resolution Length = 71 | Back alignment and structure |
| >pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The Yeast Splicing Factor Prp40 Length = 75 | Back alignment and structure |
| >pdb|2LKS|A Chain A, Ff11-60 Length = 50 | Back alignment and structure |
| >pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21 Length = 75 | Back alignment and structure |
| >pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding Transition State Length = 49 | Back alignment and structure |
| >pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus Length = 37 | Back alignment and structure |
| >pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments Length = 40 | Back alignment and structure |
| >pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide Apptppplpp Length = 41 | Back alignment and structure |
| >pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide Apptppplpp Length = 41 | Back alignment and structure |
| >pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 Length = 30 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 1e-42
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
Query: 451 KLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQE 510
F +L V + +W+ + I+ D RY L ER Q F++Y+ R ++E
Sbjct: 4 GSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLLNPX-ERXQVFDQYVXTRAEEE 62
Query: 511 AEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDH 570
E + +A ED+ M+EE+ +S+ D RF A++ DR LF++
Sbjct: 63 RREXXNXIMQAXEDFXXMMEEAX-FNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEF 121
Query: 571 LEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKID- 629
+ R E + ++ + L + + + ++W V D +E+D R ++
Sbjct: 122 VAAARXXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSM 180
Query: 630 RLEIFKEYI 638
R ++F +YI
Sbjct: 181 REDLFXQYI 189
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A Length = 190 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75 | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 83 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A Length = 37 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A Length = 41 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 50 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 82 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 | Back alignment and structure |
|---|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
| >3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 Length = 77 | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36 | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39 | Back alignment and structure |
|---|
| >1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43 | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43 | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40 | Back alignment and structure |
|---|
| >3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1000 | |||
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 100.0 | |
| 3hfh_A | 190 | Transcription elongation regulator 1; helix bundle | 99.93 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 99.77 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 99.76 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 99.75 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 99.72 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 99.72 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 99.66 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 99.6 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 99.57 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 99.3 | |
| 2doe_A | 83 | Transcription elongation regulator 1; FF domain, s | 99.24 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 99.21 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 99.17 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 99.09 | |
| 2cqn_A | 77 | Formin-binding protein 3; FF domain, structural ge | 99.05 | |
| 2jxw_A | 75 | WW domain-binding protein 4; WW domain containing | 99.02 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.97 | |
| 2l5f_A | 92 | PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA | 98.93 | |
| 1uzc_A | 71 | Hypothetical protein FLJ21157; nuclear protein, st | 98.86 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.86 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.8 | |
| 2dod_A | 82 | Transcription elongation regulator 1; FF domain, s | 98.74 | |
| 1o6w_A | 75 | PRP40, PRE-mRNA processing protein PRP40; WW domai | 98.69 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.67 | |
| 2kxq_A | 90 | E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG | 98.66 | |
| 1e0l_A | 37 | Formin binding protein; SH3 domain, WW domain, FBP | 98.66 | |
| 1tk7_A | 88 | CG4244-PB; WW domain, notch, signaling protein; NM | 98.56 | |
| 2ysi_A | 40 | Transcription elongation regulator 1; Ca150, FBP28 | 98.55 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.53 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.52 | |
| 2b7e_A | 59 | PRE-mRNA processing protein PRP40; structural prot | 98.52 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.48 | |
| 2juc_A | 59 | PRE-mRNA-splicing factor URN1; FF, helical bundle, | 98.46 | |
| 1ymz_A | 43 | CC45; artificial protein, computational design, un | 98.45 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.45 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.44 | |
| 1ywi_A | 41 | Formin-binding protein 3; WW domain, class II, pro | 98.41 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.4 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.37 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.33 | |
| 2dk7_A | 73 | Transcription elongation regulator 1; structural g | 98.33 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.33 | |
| 1e0m_A | 37 | Wwprototype; SH3 prototype, protein design, de nov | 98.31 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.31 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.31 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.3 | |
| 2dk1_A | 50 | WW domain-binding protein 4; WBP-4, formin- bindin | 98.26 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 98.25 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.24 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 98.24 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.24 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.23 | |
| 1wr3_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.22 | |
| 2ysh_A | 40 | GAS-7, growth-arrest-specific protein 7; WW domain | 98.21 | |
| 1wr7_A | 41 | NEDD4-2; all-beta, ligase; NMR {Mus musculus} | 98.2 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 98.18 | |
| 1e0n_A | 27 | Hypothetical protein; YJQ8WW domain, WW domain, sa | 98.17 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 98.16 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 98.15 | |
| 2kyk_A | 39 | E3 ubiquitin-protein ligase itchy homolog; LMP2A, | 98.15 | |
| 1wr4_A | 36 | Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M | 98.14 | |
| 2law_A | 38 | Yorkie homolog; YAP, SMAD1, CDK, signal transducti | 98.13 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 98.08 | |
| 2kpz_A | 49 | E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV | 98.07 | |
| 2dwv_A | 49 | Salvador homolog 1 protein; WW domain, dimer, stru | 98.07 | |
| 2dmv_A | 43 | Itchy homolog E3 ubiquitin protein ligase; WW doma | 98.07 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 98.05 | |
| 2ysg_A | 40 | Syntaxin-binding protein 4; synip, STXBP4, WW doma | 98.04 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 98.03 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 98.03 | |
| 2djy_A | 42 | SMAD ubiquitination regulatory factor 2; beta shee | 98.02 | |
| 2ysf_A | 40 | E3 ubiquitin-protein ligase itchy homolog; AIP4, N | 98.01 | |
| 2jv4_A | 54 | Peptidyl-prolyl CIS/trans isomerase; ppiase domain | 97.99 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 97.96 | |
| 2ez5_W | 46 | Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma | 97.95 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 97.95 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 97.94 | |
| 2l4j_A | 46 | YES-associated protein 2 (YAP2); WW domain, medaka | 97.94 | |
| 1i5h_W | 50 | Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, | 97.91 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 97.89 | |
| 2ysb_A | 49 | Salvador homolog 1 protein; WW domain, structural | 97.88 | |
| 2jx8_A | 52 | Hpcif1, phosphorylated CTD-interacting factor 1; p | 97.86 | |
| 2ho2_A | 38 | Fe65 protein, amyloid beta A4 protein-binding fami | 97.85 | |
| 2zaj_A | 49 | Membrane-associated guanylate kinase, WW and PDZ d | 97.83 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 97.82 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 97.79 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 97.76 | |
| 2jmf_A | 53 | E3 ubiquitin-protein ligase suppressor of deltex; | 97.76 | |
| 2yse_A | 60 | Membrane-associated guanylate kinase, WW and PDZ d | 97.72 | |
| 2ysc_A | 39 | Amyloid beta A4 precursor protein-binding family B | 97.7 | |
| 2ysd_A | 57 | Membrane-associated guanylate kinase, WW and PDZ d | 97.7 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.69 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 97.65 | |
| 2dof_A | 85 | Transcription elongation regulator 1; FF domain, s | 97.62 | |
| 1wmv_A | 54 | WWOX, WW domain containing oxidoreductase; all-bet | 97.62 | |
| 1jmq_A | 46 | YAP65, 65 kDa YES-associated protein; polyproline | 97.57 | |
| 3l4h_A | 109 | E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d | 97.53 | |
| 2e45_A | 55 | Fe65 protein, amyloid beta A4 precursor protein-bi | 97.46 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 96.98 | |
| 3tc5_A | 166 | Peptidyl-prolyl CIS-trans isomerase NIMA-interact; | 96.56 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 95.75 | |
| 1eg3_A | 261 | Dystrophin; EF-hand like domain, WW domain, struct | 95.41 | |
| 2kfd_A | 69 | PRE-mRNA-processing protein PRP40; FF domain, mRNA | 93.8 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 93.76 | |
| 3olm_A | 429 | E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S | 92.09 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 90.96 | |
| 1yw5_A | 177 | Peptidyl prolyl CIS/trans isomerase; WW-domain, pp | 88.8 | |
| 2k85_A | 69 | Glucocorticoid receptor DNA-binding factor 1; FF d | 85.71 | |
| 2k85_A | 69 | Glucocorticoid receptor DNA-binding factor 1; FF d | 80.4 |
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=336.55 Aligned_cols=187 Identities=24% Similarity=0.440 Sum_probs=160.0
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHhcCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001886 450 NKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKML 529 (1000)
Q Consensus 450 tkeEAk~aFk~ML~e~~V~s~~tWeka~~~i~~DpRY~al~~~~ERKqlFeeYl~~~~k~Ekeekr~k~kkare~F~~lL 529 (1000)
|++||+++|++||++++|+++|+|+++|+.|++||||++| ++++||++|++||.++.++++++++.+.++++++|.+||
T Consensus 3 s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL 81 (190)
T 3hfh_A 3 LGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMM 81 (190)
T ss_dssp CSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHhccchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcH
Q 001886 530 EESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQW 609 (1000)
Q Consensus 530 ee~~~I~~~TrW~~a~~~f~~Dprfkav~~e~ERe~lFeeyi~~L~kkeke~~r~~rkra~~ef~~lL~e~~~It~~TtW 609 (1000)
+++ .|+++|+|.+|..+|.+||||++|.++.||+.||++||..|+++++++.+..+++++.+|.+||.++ .|++.|+|
T Consensus 82 ~e~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~t~W 159 (190)
T 3hfh_A 82 EEA-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQSRW 159 (190)
T ss_dssp --------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTTCCH
T ss_pred HHc-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCCCCH
Confidence 996 6999999999999999999999998889999999999999999999988899999999999999998 58999999
Q ss_pred HHHHHHhhhhHhhhcCCch-hHHHHHHHHHH
Q 001886 610 RKVQDRLEADERCSRLEKI-DRLEIFKEYII 639 (1000)
Q Consensus 610 ~ev~~~L~~D~Rf~~L~~~-DrlelFed~I~ 639 (1000)
.+|+..|.+|+||.+|+.. +|++||++||.
T Consensus 160 ~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 160 SXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp HHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 9999999999999999985 99999999983
|
| >3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* | Back alignment and structure |
|---|
| >1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A | Back alignment and structure |
|---|
| >1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 | Back alignment and structure |
|---|
| >2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* | Back alignment and structure |
|---|
| >2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* | Back alignment and structure |
|---|
| >2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A | Back alignment and structure |
|---|
| >2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans} | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} | Back alignment and structure |
|---|
| >1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A | Back alignment and structure |
|---|
| >2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A | Back alignment and structure |
|---|
| >2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1 | Back alignment and structure |
|---|
| >1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* | Back alignment and structure |
|---|
| >3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A | Back alignment and structure |
|---|
| >2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} | Back alignment and structure |
|---|
| >2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1000 | ||||
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 5e-17 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 7e-12 | |
| d1uzca_ | 69 | a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [T | 7e-06 | |
| d2b7ea1 | 56 | a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP | 9e-16 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 1e-15 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 4e-13 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 1e-07 | |
| d2doea1 | 70 | a.159.2.1 (A:784-853) Transcription elongation reg | 1e-06 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 2e-14 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 2e-11 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 1e-04 | |
| d2doda1 | 69 | a.159.2.1 (A:651-719) Transcription elongation reg | 8e-04 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 5e-14 | |
| d1o6wa2 | 46 | b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's | 7e-10 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 2e-13 | |
| d2rm0w1 | 37 | b.72.1.1 (W:1-37) Formin binding protein FBP28 dom | 3e-11 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 5e-13 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 2e-12 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 1e-05 | |
| d2dofa1 | 72 | a.159.2.1 (A:888-959) Transcription elongation reg | 7e-05 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 2e-11 | |
| d2dk1a1 | 38 | b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP | 6e-11 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 1e-10 | |
| d1o6wa1 | 29 | b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's y | 1e-10 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 2e-10 | |
| d1ywia1 | 28 | b.72.1.1 (A:15-42) Huntingtin-interacting protein | 2e-10 | |
| d1i5hw_ | 50 | b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain | 2e-05 | |
| d1i5hw_ | 50 | b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain | 3e-04 | |
| d1pina1 | 34 | b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho | 2e-05 | |
| d1pina1 | 34 | b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho | 0.003 | |
| d1tk7a1 | 45 | b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) | 4e-05 | |
| d1tk7a1 | 45 | b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) | 5e-04 | |
| d1v9da_ | 332 | a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 | 1e-04 | |
| d2jmfa1 | 33 | b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII | 1e-04 | |
| d2jmfa1 | 33 | b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII | 7e-04 | |
| d1jmqa_ | 46 | b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens | 2e-04 | |
| d1jmqa_ | 46 | b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens | 6e-04 |
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Hypa/FBP11 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.0 bits (182), Expect = 5e-17
Identities = 34/66 (51%), Positives = 43/66 (65%)
Query: 443 QEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEY 502
++ + K EAK AFK LL+ V S+ SW+QAM+ IIND RY AL L E+KQAFN Y
Sbjct: 4 KKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 63
Query: 503 LGQRKK 508
Q +K
Sbjct: 64 KVQTEK 69
|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 69 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 46 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} Length = 37 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 29 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} Length = 28 | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50 | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34 | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45 | Back information, alignment and structure |
|---|
| >d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 332 | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33 | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1000 | |||
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 99.69 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 99.54 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 99.43 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.41 | |
| d2doea1 | 70 | Transcription elongation regulator 1 {Human (Homo | 99.16 | |
| d2dofa1 | 72 | Transcription elongation regulator 1 {Human (Homo | 99.13 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 99.11 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 99.09 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 99.07 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 99.02 | |
| d1uzca_ | 69 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.01 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d2doda1 | 69 | Transcription elongation regulator 1 {Human (Homo | 98.97 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.92 | |
| d1o6wa2 | 46 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.89 | |
| d2rm0w1 | 37 | Formin binding protein FBP28 domain {Domestic mous | 98.86 | |
| d1o6wa1 | 29 | Splicing factor prp40 {Baker's yeast (Saccharomyce | 98.79 | |
| d1ywia1 | 28 | Huntingtin-interacting protein HYPA/FBP11 {Human ( | 98.77 | |
| d2dk1a1 | 38 | WW domain-binding protein 4, WBP4 {Human (Homo sap | 98.64 | |
| d2b7ea1 | 56 | Pre-mRNA-processing protein PRP40 {Baker's yeast ( | 98.52 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.43 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.43 | |
| d2cqna1 | 64 | Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | 98.31 | |
| d2jmfa1 | 33 | Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr | 98.27 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.26 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.26 | |
| d1pina1 | 34 | Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId | 98.2 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.13 | |
| d1jmqa_ | 46 | Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606 | 98.12 | |
| d1i5hw_ | 50 | Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n | 98.04 | |
| d1tk7a1 | 45 | Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso | 98.04 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 97.03 | |
| d2ho2a1 | 33 | Amyloid beta A4 precursor protein-binding family B | 97.01 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 89.99 | |
| d1eg3a3 | 38 | Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | 88.28 |
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Another 3-helical bundle superfamily: FF domain family: FF domain domain: Pre-mRNA-processing protein PRP40 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=5.9e-18 Score=137.40 Aligned_cols=54 Identities=30% Similarity=0.550 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHH-hcCccccccCCh-HHHHHHHHHHHHHH
Q 001886 453 EAKNAFKALLESANVGSDWSWDQAMQAI-INDRRYGALKTL-GERKQAFNEYLGQR 506 (1000)
Q Consensus 453 EAk~aFk~ML~e~~V~s~~tWeka~~~i-~~DpRY~al~~~-~ERKqlFeeYl~~~ 506 (1000)
||+++|++||++++|+|+|||+++|+.| ++||||++|+++ .|||++||+||.++
T Consensus 1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~R 56 (56)
T d2b7ea1 1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 56 (56)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhcC
Confidence 6899999999999999999999999976 689999999765 59999999999863
|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doea1 a.159.2.1 (A:784-853) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1uzca_ a.159.2.1 (A:) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|