Citrus Sinensis ID: 001920

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------
MFGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTTEAETGSASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAAPSSPFAPSPAFGQSSASPFSSSTMSNLFAPKTSTFTSSTNPFGSTSSATPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSSTPSGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLSATPSSVTVPVPVTNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSLLTSRHLSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRALIIRPTEQWPLGASAMKTSSIKDTSTRARENESPVENGTVKEKVQPVKVNHKPNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQDDCAAALGC
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccEEEEccHHHHHHHHHcccccEEEEccEEEEccccEEEEEcccccccccccccEEEEEccEEEEcccccccccccccccccEEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcccccccccccccccHHHHHHHHccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccEEcccHHHHHHccccccccEEEEccEEEEccccEEEEEcccEEcccccHccEEEEEccEEEEEccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEccccEcccccccccccccccHHHccc
mfgstnpfgqsssspfgsqsifgqnnnasnnpfapkpfgtttpfgstgssifggtstgvfgappssspfssattfgassspafgssmpafgasstpsfgsssssfggssifgqkpafgfgststqtspfgsttqqsqpafgsslfgsstpfgassqpafgatstpafgtsnpafgatstpafgatsapafgatstpafgstgtafgassapafgsggafgasstplfgssstsafgasstpafgassapafgassapafgasstpafgassagsfsfgsspafgqstsafssspfgtstspfgaqsspfggqsttptfgstgfgqstfggqrggsriaayaptteaetgsasqpagklesissmpvykdksheelrwedyqlgdkggplpagqsaggigfgasaapsspfapspafgqssaspfssstmsnlfapktstftsstnpfgstssatpsifgststptfgtssspafgsspslfsntapqgtvssfgsgmnfgsqssplfssaatgqtgsafgqatssfgqstmpsfgqsnlfstpspgfsggifsstpslvpsstpsgfgqttpsvsmpfqlaqpaqtagafgfsnfgqtqagntsnfggtlgtfgqsnfgqlsatpssvtvpvpvtnpfgtlpampqmsiaragtapsiqygissmpvveksapVRISSLLTSRHLSQrrirlparkynpkndnmrvpffsddeetpstpkadalfiprenpraliirpteqwplgasamktssikdtstrarenespvengtvkekvqpvkvnhkpngvhddhsnqkdesyVTLNGHRAGEAAIVYEHGANiealmpklrrsdyytepRIQELAAkeraepgfcrrvkdfvvgrhgygsikflgetdvrrLDLESLVQFNNREVIVymddskkppvgqglnkpaevTLLNIkcfdkktgvqykegpkIEKYKEMLKRKAEdqgaefisydpikgewKFSVNhfseyklgdedkqddqddcaaalgc
mfgstnpfgqsssspFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTteaetgsasqpagklesisSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAAPSSPFAPSPAFGQSSASPFSSSTMSNLFAPKTSTFTSSTNPFGSTSSATPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSSTPSGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLSATPSSVTVPVPVTNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSlltsrhlsqrrirlparkynpkndnmrvpffsddeetpstpkadalfiprenpraliirpteqwplgasamktssikdtstrarenespvengtvkekvqpvkvnhkpngvhddhsnqKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELaakeraepgfcRRVKdfvvgrhgygsikflgetdvrrLDLESLVQFNNREVIVYMddskkppvgqglnkpaevtllnikcfdkktgvqykegpkiEKYKEMLKRKAEDQGAEfisydpikgewKFSVNHFSEYKlgdedkqddqDDCAAALGC
MFGSTNpfgqsssspfgsqsIFGQNNNASNNPFAPKPfgtttpfgstgssifggtstgvfgappssspfssattfgassspafgssmpafgasstpsfgsssssfggssifgQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATStpafgstgtafgassapafgsggafgasstplfgssstsafgasstpafgassapafgassapafgasstpafgassagsfsfgsspafgqstsafssspfgtstspfgAQSSpfggqsttptfgstgfgqstfggqrggsrIAAYAPTTEAETGSASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDKGGPLpagqsaggigfgasaapsspfapspafgqssaspfsssTMSNLFAPKTSTFTSSTNPFGSTSSAtpsifgststptfgtssspafgsspslfsNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLfstpspgfsggifsstpslvpsstpsGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLsatpssvtvpvpvtNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSLLTSRHLSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRALIIRPTEQWPLGASAMKTSSIKDTSTRARENESPVENGTVKEKVQPVKVNHKPNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYklgdedkqddqddcaaalgc
************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************AFGFSNF**********FGGTLGTFG***************V*VPVT**F*********************YG***********************************************************************ALIIR****************************************************************VTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMD**********LNKPAEVTLLNIKCFDKKTGVQYKEG*****************GAEFISYDPIKGEWKFSVNHFSEY********************
MFGS********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDK*************KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQDD**AALGC
***************FGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAP*************ASSSPAFGSSMPAFG***************GSSIFGQKPAFGFGST****************AFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAP***************LESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAA************************SNLFAPKTSTFTSSTNPFGSTSSATPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTP*************TTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLSATPSSVTVPVPVTNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSLLTSRHLSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRALIIRPTEQWPLGASA**********************GTVKEKVQPVKVNHKPNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQDDCAAALGC
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************SRIAAY**TT*AETGSASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAG*SAG**GFGA*AAPSSPFAPSPAFGQSSASPFSSSTMSN********F****N******S*TPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLF*************QATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSSTPSGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQ*****NFGGT****GQ******************************************************************************************************************************************************************************************************************MPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLG*****************
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MFGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGSTGSSIFGGTSTGVFGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFGFGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFGTSNPAFGATSTPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGASSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGTSTSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTTEAETGSASQPAGKLESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAAPSSPFAPSPAFGQSSASPFSSSTMSNLFAPKTSTFTSSTNPFGSTSSATPSIFGSTSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSSTPSGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLSATPSSVTVPVPVTNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSLLTSRHLSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRALIIRPTEQWPLGASAMKTSSIKDTSTRARENESPVENGTVKEKVQPVKVNHKPNGVHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQDDQDDCAAALGC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query996 2.2.26 [Sep-21-2011]
P52948 1817 Nuclear pore complex prot no no 0.747 0.410 0.307 8e-47
P49793 1816 Nuclear pore complex prot yes no 0.157 0.086 0.422 9e-30
Q54EQ8 2053 Nuclear pore complex prot yes no 0.156 0.075 0.396 6e-25
G5EEH9 1678 Nuclear pore complex prot yes no 0.154 0.091 0.367 7e-24
P18899430 Stress protein DDR48 OS=S yes no 0.280 0.648 0.205 4e-18
Q9UTK4 1778 Nucleoporin nup189 OS=Sch yes no 0.198 0.111 0.280 8e-17
Q02629959 Nucleoporin NUP100/NSP100 no no 0.481 0.500 0.260 8e-17
P49687 1317 Nucleoporin NUP145 OS=Sac no no 0.139 0.105 0.339 2e-15
Q026301113 Nucleoporin NUP116/NSP116 no no 0.283 0.253 0.226 3e-15
Q6CC84980 Transcription elongation no no 0.127 0.129 0.330 4e-08
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98 PE=1 SV=4 Back     alignment and function desciption
 Score =  189 bits (481), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 283/919 (30%), Positives = 414/919 (45%), Gaps = 174/919 (18%)

Query: 190 FGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTP---LFGSSSTSAFGASSTPAFGAS 246
           FG TS  AFG++  AFG+S+     +GG FG S T    LFG+SS S    S++  FG  
Sbjct: 29  FGTTSGGAFGTS--AFGSSN----NTGGLFGNSQTKPGGLFGTSSFSQPATSTSTGFG-- 80

Query: 247 SAPAFGASSAPAFGASSTPAFGASSAGSFSFGS-SPAFGQST-SAFSSSPFGTSTSPFGA 304
               FG S+  A        FG +S G+  F S + AF Q+  + F +  FGTSTS  G 
Sbjct: 81  ----FGTSTGTA-----NTLFGTASTGTSLFSSQNNAFAQNKPTGFGN--FGTSTSSGGL 129

Query: 305 QSSPFGGQSTTPT-FGSTG---FGQSTFGGQRGGSRIAAYAPT---TEAETGSASQPAGK 357
               FG  +TT   FGST    FG S+F     G+ I    PT   T  + G ++  + K
Sbjct: 130 ----FGTTNTTSNPFGSTSGSLFGPSSFTAAPTGTTIKFNPPTGTDTMVKAGVSTNISTK 185

Query: 358 LESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIG---FGASAAPSSP---FA 411
            + I++M  Y+ KS EELR EDYQ   KG   P  Q   G     FG+S A SS    F+
Sbjct: 186 HQCITAMKEYESKSLEELRLEDYQANRKG---PQNQVGAGTTTGLFGSSPATSSATGLFS 242

Query: 412 PSP-----AFGQSSASPFSSSTM------SNLFAPKTSTFTSS-TNPFGSTSSATPSIFG 459
            S      A+GQ+  + F +ST         LF  +    TS  + PFG  ++   + F 
Sbjct: 243 SSTTNSGFAYGQNKTA-FGTSTTGFGTNPGGLFGQQNQQTTSLFSKPFGQATTTQNTGFS 301

Query: 460 STSTPTFGTSSSPAFGSSPSLFSNTAPQGTVSSFGSGMNFGSQSSPLFSSAATGQTGSAF 519
             +T T G  S+   G    LF  T        FG+  N  + ++    +   GQT + F
Sbjct: 302 FGNTSTIGQPSTNTMG----LFGVTQASQPGGLFGTATNTSTGTAFGTGTGLFGQTNTGF 357

Query: 520 GQATSS-FGQSTMPSFGQSNLFSTPSPGF---SGGIFSSTPSLVPSSTPS----GFGQTT 571
           G   S+ FG + + +FG S   +T +P F   SGG+F + P+L   +  +    GFG  T
Sbjct: 358 GAVGSTLFGNNKLTTFGSS---TTSAPSFGTTSGGLFGNKPTLTLGTNTNTSNFGFGTNT 414

Query: 572 PSVSM----PFQLAQPAQTAGAFGFSNFGQTQA----GNTSNFGGTLGT--FGQSNFGQL 621
              S+    P            FG +  G  QA     N    GG LGT  FG   F   
Sbjct: 415 SGNSIFGSKPAPGTLGTGLGAGFG-TALGAGQASLFGNNQPKIGGPLGTGAFGAPGFNTT 473

Query: 622 SATP--SSVTVPVPVTNPFGTL--PAMPQMSIARA-----GTAPSIQYGISSMPVVEK-- 670
           +AT    +   PV +T+P  +    A+ Q  I        G +P  +  +S     E+  
Sbjct: 474 TATLGFGAPQAPVALTDPNASAAQQAVLQQHINSLTYSPFGDSPLFRNPMSDPKKKEERL 533

Query: 671 --SAPVRISSLLTSRH--LSQRRIRLPARKYNPK----NDNMRVPFFS--DDEETPSTPK 720
             + P    +L T  H  L+ R    PA +  PK        +   F   DD+E PS   
Sbjct: 534 KPTNPAAQKALTTPTHYKLTPR----PATRVRPKALQTTGTAKSHLFDGLDDDE-PSL-- 586

Query: 721 ADALFIPRENPRALIIRPTEQWPLGASAMKTSSIKDTSTRARENESPVENGTVKEKV--- 777
           A+  F+P+++ + L+++      L  S + +   +D+   A  +E P ENG   E+    
Sbjct: 587 ANGAFMPKKSIKKLVLK-----NLNNSNLFSPVNRDSENLASPSEYP-ENG---ERFSFL 637

Query: 778 -QPVKVNHKPNGVHD--------------------------DHSNQKDESYVTLNGHRAG 810
            +PV  NH+ +G  D                           +SN  D++ V LN   A 
Sbjct: 638 SKPVDENHQQDGDEDSLVSHFYTNPIAKPIPQTPESAGNKHSNSNSVDDTIVALNMRAAL 697

Query: 811 EAAI-------------VYEHGANIE----ALMPK---LRRSDYYTEPRIQELAAKERAE 850
              +             + +    IE     + P    L +  YYT P + +L AK   E
Sbjct: 698 RNGLEGSSEETSFHDESLQDDREEIENNSYHMHPAGIILTKVGYYTIPSMDDL-AKITNE 756

Query: 851 PGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGL 910
            G C  V DF +GR GYGSI F G+ ++  L+L+ +V    +EV+VY+DD++KPPVG+GL
Sbjct: 757 KGEC-IVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVGEGL 815

Query: 911 NKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLKRKAEDQGAEFISYDPIKGEWKF 968
           N+ AEVTL  +   DK +    K   ++    Y+  L+  +  QGA+F  Y P  G W F
Sbjct: 816 NRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVF 875

Query: 969 SVNHFSEYKLGDEDKQDDQ 987
            V+HFS+Y L D D+++++
Sbjct: 876 KVSHFSKYGLQDSDEEEEE 894
Nup98 and Nup96 play a role in the bidirectional transport across the nucleoporin complex (NPC). The repeat domain in Nup98 has a direct role in the transport.
Homo sapiens (taxid: 9606)
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus GN=Nup98 PE=1 SV=2 Back     alignment and function description
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum GN=nup98 PE=3 SV=1 Back     alignment and function description
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans GN=npp-10 PE=2 SV=1 Back     alignment and function description
>sp|P18899|DDR48_YEAST Stress protein DDR48 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DDR48 PE=1 SV=4 Back     alignment and function description
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup189 PE=1 SV=1 Back     alignment and function description
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP100 PE=1 SV=1 Back     alignment and function description
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP145 PE=1 SV=1 Back     alignment and function description
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP116 PE=1 SV=2 Back     alignment and function description
>sp|Q6CC84|SPT5_YARLI Transcription elongation factor SPT5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SPT5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query996
2254264851013 PREDICTED: nuclear pore complex protein 0.980 0.964 0.756 0.0
1659054621005 nucleoporin 98 [Daucus carota] 0.968 0.960 0.678 0.0
3565423531007 PREDICTED: uncharacterized protein LOC10 0.972 0.962 0.705 0.0
3565495981038 PREDICTED: nuclear pore complex protein 0.973 0.934 0.686 0.0
3565496001010 PREDICTED: nuclear pore complex protein 0.967 0.954 0.698 0.0
223294681041 Nucleoporin autopeptidase [Arabidopsis t 0.964 0.923 0.634 0.0
449460736994 PREDICTED: nucleoporin nup189-like [Cucu 0.964 0.966 0.675 0.0
2241177321007 predicted protein [Populus trichocarpa] 0.945 0.935 0.649 0.0
49143431096 F14N23.29 [Arabidopsis thaliana] 0.958 0.871 0.606 0.0
2977424901047 unnamed protein product [Vitis vinifera] 0.723 0.688 0.733 0.0
>gi|225426485|ref|XP_002277144.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1381 bits (3574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 781/1032 (75%), Positives = 855/1032 (82%), Gaps = 55/1032 (5%)

Query: 1    MFGSTNPFGQSSSSPFGSQSIFGQNNNASNNPFAPKPFGTTTPFGS-TGSSIFGGTSTGV 59
            MFGS+NPFGQSSSSPFGSQS+FGQ NNA+ NPFAPKPFG+TTPFG+ TG SIFGGTSTGV
Sbjct: 1    MFGSSNPFGQSSSSPFGSQSVFGQTNNATTNPFAPKPFGSTTPFGAQTGGSIFGGTSTGV 60

Query: 60   FGAPPSSSPFSSATTFGASSSPAFGSSMPAFGASSTPSFGSSSSSFGGSSIFGQKPAFG- 118
            FGA  SSSP  S  TFGASSSPAFGSS+PAFGASSTP+FGSSSSSFGGSS+FGQKP FG 
Sbjct: 61   FGATQSSSPLPSTATFGASSSPAFGSSVPAFGASSTPAFGSSSSSFGGSSVFGQKPGFGG 120

Query: 119  FGSTSTQTSPFGSTTQQSQPAFGSSLFGSSTPFGASSQPAFGATSTPAFG-TSNPAFGAT 177
            FGST TQTSPFGS  QQSQPAFGSSLFGSSTPFGAS Q AFGA+STPAF  TS PAFGAT
Sbjct: 121  FGSTPTQTSPFGSAFQQSQPAFGSSLFGSSTPFGAS-QAAFGASSTPAFAATSTPAFGAT 179

Query: 178  STPAFGATSAPAFGATSTPAFGSTGTAFGASSAPAFGSGGAFGASSTPLFGSSSTSAFGA 237
            STPAFGATS  AFG+T +P FGSTG+AFG S AP F S GAFGASSTP+FGSS+TSAFG 
Sbjct: 180  STPAFGATSTSAFGSTPSPTFGSTGSAFGGSGAPVFASSGAFGASSTPVFGSSTTSAFGT 239

Query: 238  SSTPAFGASSAPAFGASSAPAFGASSTPAFGASSAGSFSFGSSPAFGQSTSAFSSSPFGT 297
            SSTPAF                GASSTPAFGASS  SFSFGS+PAFGQST+AF SSPFGT
Sbjct: 240  SSTPAF----------------GASSTPAFGASSTPSFSFGSTPAFGQSTAAFGSSPFGT 283

Query: 298  STSPFGAQSSPFGGQSTTPTFGSTGFGQSTFGGQRGGSRIAAYAPTTEAETGSASQPAGK 357
            +TSPFGAQSSPFG Q+TTPTFG TGFGQS FGGQRGGSR+AAY PTTE ++GS +QP GK
Sbjct: 284  ATSPFGAQSSPFGAQATTPTFGGTGFGQSAFGGQRGGSRVAAYTPTTEVDSGSGTQPVGK 343

Query: 358  LESISSMPVYKDKSHEELRWEDYQLGDKGGPLPAGQSAGGIGFGASAAPSSPFAPSPAFG 417
            LESIS+MPVYKDKSHEELRWEDYQLGDKGGP PA QS GG+GFGAS   S+PFA SPAFG
Sbjct: 344  LESISAMPVYKDKSHEELRWEDYQLGDKGGPAPASQSTGGVGFGASNTQSNPFAASPAFG 403

Query: 418  QSSASPFSSSTMSNLFAPKT------------------STF--TSSTNPFGSTSSATPSI 457
            QSSA+PFSSST SN FAP+T                  S F  +S++NPFGSTSSATPSI
Sbjct: 404  QSSANPFSSSTSSNPFAPRTPAFGSSGFGGSSTPAFSSSPFGASSTSNPFGSTSSATPSI 463

Query: 458  FGSTSTPTFGTSSSPAF---------GSSPSLFSNTAPQGTVSSFGSGMNFG-SQSSPLF 507
            FG++STP FG SSSP+          GSSPS+F +T  QGT  +FGSG+NFG +QSSPLF
Sbjct: 464  FGASSTPPFGASSSPSLFGASSSSGFGSSPSIFGSTPAQGTAPAFGSGLNFGNTQSSPLF 523

Query: 508  SSA--ATGQTGSAFGQATSSFGQSTMPSFGQSNLFSTPSPGFSGGIFSSTPSLVPSSTPS 565
             S+  + GQT SAFGQ+TS+FGQST PSFGQS++F+TPS GF G +FSS P L+ +S P 
Sbjct: 524  QSSTPSLGQTASAFGQSTSAFGQSTTPSFGQSSIFNTPSTGFGGNLFSSAPPLLSTSNPV 583

Query: 566  GFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFGQSNFGQLSATP 625
            GFGQTTPS+S PFQ AQPAQT GAFGFSNFGQTQA   S FGG    FG + FGQ SA  
Sbjct: 584  GFGQTTPSLSTPFQPAQPAQTIGAFGFSNFGQTQAAGASGFGGGSNIFGSNAFGQSSAAQ 643

Query: 626  SSVTV-PVPVTNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAPVRISSLLTSRH 684
            +SV V P P  NPFGTLPAMPQMSI R GTAPSIQYGISSMPVV+K APVRISSLLTSRH
Sbjct: 644  NSVVVQPAPAANPFGTLPAMPQMSIGRTGTAPSIQYGISSMPVVDKPAPVRISSLLTSRH 703

Query: 685  LSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRALIIRPTEQWPL 744
            LSQRRIRLPARKY+PKND  +VPFFSDDEETPSTPKADALF+PRENPR+L+IRP EQW L
Sbjct: 704  LSQRRIRLPARKYHPKNDAPKVPFFSDDEETPSTPKADALFVPRENPRSLVIRPMEQWSL 763

Query: 745  GASAMKTSSIKDTSTRARENESPVENGTVKEKVQPVKVNHKPNGVHDDHSNQKDESYVTL 804
             ++A KTS +K+ S    EN + VENG  KE++  +K N KPNGVHDDHS QK +SY+TL
Sbjct: 764  RSNAEKTSPLKEASKPVHENANLVENGLAKERIHTMKPNQKPNGVHDDHSIQKGDSYITL 823

Query: 805  NGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGR 864
             GHRAGEAAIVYEHGA+IEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGR
Sbjct: 824  TGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGR 883

Query: 865  HGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCF 924
            HGYGSIKF+GETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCF
Sbjct: 884  HGYGSIKFMGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCF 943

Query: 925  DKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGDEDKQ 984
            DKKTGVQY EGPKI KYKEMLKRKAEDQGAEF+SYDP+KGEWKF VNHFS+Y+LGDE+  
Sbjct: 944  DKKTGVQYTEGPKIGKYKEMLKRKAEDQGAEFVSYDPMKGEWKFRVNHFSKYELGDEEI- 1002

Query: 985  DDQDDCAAALGC 996
             D  D  A L C
Sbjct: 1003 -DDWDMHAVLYC 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|165905462|dbj|BAF98996.1| nucleoporin 98 [Daucus carota] Back     alignment and taxonomy information
>gi|356542353|ref|XP_003539631.1| PREDICTED: uncharacterized protein LOC100789177 [Glycine max] Back     alignment and taxonomy information
>gi|356549598|ref|XP_003543179.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356549600|ref|XP_003543180.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|22329468|ref|NP_172510.2| Nucleoporin autopeptidase [Arabidopsis thaliana] gi|79317517|ref|NP_001031018.1| Nucleoporin autopeptidase [Arabidopsis thaliana] gi|19310423|gb|AAL84948.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gi|27764948|gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gi|110742211|dbj|BAE99032.1| hypothetical protein [Arabidopsis thaliana] gi|332190453|gb|AEE28574.1| Nucleoporin autopeptidase [Arabidopsis thaliana] gi|332190454|gb|AEE28575.1| Nucleoporin autopeptidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449460736|ref|XP_004148101.1| PREDICTED: nucleoporin nup189-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224117732|ref|XP_002317654.1| predicted protein [Populus trichocarpa] gi|222860719|gb|EEE98266.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4914343|gb|AAD32891.1|AC005489_29 F14N23.29 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297742490|emb|CBI34639.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query996
TAIR|locus:2202887997 AT1G59660 "AT1G59660" [Arabido 0.522 0.521 0.521 3.4e-188
TAIR|locus:20127881041 AT1G10390 "AT1G10390" [Arabido 0.530 0.507 0.528 1.3e-170
FB|FBgn0039120 1960 Nup98-96 "Nucleoporin 98-96kD" 0.224 0.114 0.342 1.3e-40
UNIPROTKB|E1BYU8 1731 NUP98 "Uncharacterized protein 0.309 0.177 0.311 4.2e-37
UNIPROTKB|E2R4V6 1800 NUP98 "Uncharacterized protein 0.146 0.081 0.433 8.4e-37
UNIPROTKB|J3KP29 1638 NUP98 "Nuclear pore complex pr 0.146 0.089 0.426 8.7e-37
UNIPROTKB|P52948 1817 NUP98 "Nuclear pore complex pr 0.146 0.080 0.426 3e-36
RGD|71033 1816 Nup98 "nucleoporin 98" [Rattus 0.146 0.080 0.433 3.8e-36
UNIPROTKB|E1BCV4 1816 NUP98 "Uncharacterized protein 0.146 0.080 0.433 5.9e-36
UNIPROTKB|F1SUZ2 1702 NUP98 "Uncharacterized protein 0.146 0.085 0.423 1.8e-31
TAIR|locus:2202887 AT1G59660 "AT1G59660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1356 (482.4 bits), Expect = 3.4e-188, Sum P(4) = 3.4e-188
 Identities = 286/548 (52%), Positives = 344/548 (62%)

Query:   438 STFTSSTNPFGSTSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTAPQGTVSSFGSGM 497
             ST +++T+ FGS+SS                                  Q +   FGS  
Sbjct:   461 STVSNTTSVFGSSSSLTTNTSQPLGSSIFGSTPAHGSTPGFSIGGFNNSQSS-PLFGSNP 519

Query:   498 NFGSQSSPLFSSAAT--GQ-TGSAFGQATSSFGQSTMPSFGQSNLXXXXXXXXXXXXXXX 554
             +F   ++P FS  +   GQ T  A GQ++S FGQ+T P+  QSN                
Sbjct:   520 SFAQNTTPAFSQTSPLFGQNTTPALGQSSSVFGQNTNPALVQSN---TFSTPSTGFGNTF 576

Query:   555 XXXXXXXXXXXGFGQTTPSVSMPFQLAQPAQTAGAFGFSNFGQTQAGNTSNFGGTLGTFG 614
                         FGQ TP+V+ PFQ AQP Q  GAFGF+NFGQTQ  NT++  G +GTF 
Sbjct:   577 SSSSSLTTSISPFGQITPAVT-PFQSAQPTQPLGAFGFNNFGQTQIANTTDIAGAMGTFS 635

Query:   615 QSNFGQLXXXXXXXXXXXX-XXNPFGTLPAMPQMSIARAGTAPSIQYGISSMPVVEKSAP 673
             Q NF Q                NPFGTLPA+PQ+SIA+ G +PSIQYGISSMPVV+K AP
Sbjct:   636 QGNFKQQPALGNSAVMQPTPVTNPFGTLPALPQISIAQGGNSPSIQYGISSMPVVDKPAP 695

Query:   674 VRISSLLTSRHLSQRRIRLPARKYNPKNDNMRVPFFSDDEETPSTPKADALFIPRENPRA 733
             VR+S LLTSRHL QRR+RLP RKY P +D  +VPFFSD+EE  STPKADA FIPRENPRA
Sbjct:   696 VRVSPLLTSRHLLQRRVRLPTRKYRPSDDGPKVPFFSDEEENSSTPKADAFFIPRENPRA 755

Query:   734 LIIRPTEQWPLGASAMKTSSIKDTSTRAR-----ENESPVENGTVKEKVQPVKVNHKPNG 788
             L IRP E+          + +++   R+       N    +NG ++E   PVKVN K NG
Sbjct:   756 LFIRPVERVKSEHPKDSPTPLQENGKRSNGVTNGANHETKDNGAIRE-APPVKVNQKQNG 814

Query:   789 VHDDHSNQKDESYVTLNGHRAGEAAIVYEHGANIEALMPKLRRSDYYTEPRIQELAAKER 848
              H++H   K       NG  +  +      GA+IE+LMPKL  S+Y+TEPRIQELAAKER
Sbjct:   815 THENHGGDK-------NGSHSSPS------GADIESLMPKLHHSEYFTEPRIQELAAKER 861

Query:   849 AEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQ 908
              E G+C+RVKDFVVGRHGYGSIKFLGETDV RLDLE +VQF NREV VYMD+SKKPPVGQ
Sbjct:   862 VEQGYCKRVKDFVVGRHGYGSIKFLGETDVCRLDLEMVVQFKNREVNVYMDESKKPPVGQ 921

Query:   909 GLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKF 968
             GLNKPA VTLLNIKC DKKTG Q  EG +++KYKEMLKRKA +QGA+F+SYDP+ GEW F
Sbjct:   922 GLNKPAVVTLLNIKCMDKKTGTQVMEGERLDKYKEMLKRKAGEQGAQFVSYDPVNGEWTF 981

Query:   969 SVNHFSEY 976
              V HFS Y
Sbjct:   982 KVEHFSSY 989
GO:0005215 "transporter activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005643 "nuclear pore" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
TAIR|locus:2012788 AT1G10390 "AT1G10390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0039120 Nup98-96 "Nucleoporin 98-96kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYU8 NUP98 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4V6 NUP98 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KP29 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P52948 NUP98 "Nuclear pore complex protein Nup98-Nup96" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|71033 Nup98 "nucleoporin 98" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BCV4 NUP98 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUZ2 NUP98 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G10390
nucleoporin family protein; nucleoporin family protein; FUNCTIONS IN- transporter activity; INVOLVED IN- transport; LOCATED IN- chloroplast, nuclear pore; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Peptidase S59, nucleoporin (InterPro-IPR007230); BEST Arabidopsis thaliana protein match is- nucleoporin family protein (TAIR-AT1G59660.1); Has 64864 Blast hits to 25574 proteins in 1296 species- Archae - 105; Bacteria - 15037; Metazoa - 20267; Fungi - 10858; Plants - 3281; Viruses - 699; Other Eukaryotes - 14617 (source- NCBI BLink). (1041 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G80670
transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (349 aa)
    ••  0.961
AT2G30050
transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (302 aa)
     •• 0.886
AT2G41620
nucleoporin interacting component family protein; nucleoporin interacting component family prot [...] (861 aa)
    •   0.819
AT1G75340
zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- z [...] (435 aa)
    •  •0.819
AT1G20860
phosphate transporter family protein; phosphate transporter family protein; FUNCTIONS IN- phosp [...] (534 aa)
      • 0.679
emb1427
emb1427 (embryo defective 1427); tubulin binding; embryo defective 1427 (emb1427); FUNCTIONS IN [...] (995 aa)
      • 0.538
At1g33410
SAR1 (suppressor of auxin resistance1); suppressor of auxin resistance1 (SAR1); INVOLVED IN- re [...] (1459 aa)
      • 0.463
AT3G14120
unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- transport; LOCATED IN- [...] (1101 aa)
      • 0.462
AT4G32910
unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknow [...] (716 aa)
      • 0.439
AT1G10850
ATP binding / protein binding / protein kinase/ protein serine/threonine kinase; ATP binding / [...] (663 aa)
      • 0.439

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query996
pfam04096137 pfam04096, Nucleoporin2, Nucleoporin autopeptidase 4e-65
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 9e-09
PTZ00473420 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Pr 6e-06
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-05
PTZ00473420 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Pr 8e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 2e-04
COG5651490 COG5651, COG5651, PPE-repeat proteins [Cell motili 4e-04
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 6e-04
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 7e-04
PTZ00473420 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Pr 0.001
PTZ00473420 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Pr 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
pfam06070777 pfam06070, Herpes_UL32, Herpesvirus large structur 0.001
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.002
PTZ00473420 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Pr 0.002
COG5651490 COG5651, COG5651, PPE-repeat proteins [Cell motili 0.002
pfam05109830 pfam05109, Herpes_BLLF1, Herpes virus major outer 0.004
>gnl|CDD|202886 pfam04096, Nucleoporin2, Nucleoporin autopeptidase Back     alignment and domain information 
 Score =  215 bits (549), Expect = 4e-65
 Identities = 68/141 (48%), Positives = 86/141 (60%), Gaps = 4/141 (2%)

Query: 833 DYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNR 892
            Y+T P I+EL+     E      V++F VGR GYGSI+FLG  D+  +DL+ +V F  R
Sbjct: 1   GYWTSPSIEELSKMSLEEL---SSVENFTVGRKGYGSIEFLGPVDLSGIDLDKIVDFGPR 57

Query: 893 EVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQ 952
            V VY DD  KPPVG+GLN PA +TL N    DK T    K+ P   ++++ LKR  E +
Sbjct: 58  SVEVYPDDENKPPVGEGLNVPATITLENCYPRDKSTKKPIKD-PSKPRFEKHLKRLKEKK 116

Query: 953 GAEFISYDPIKGEWKFSVNHF 973
           GAEFISYDP  G W F V HF
Sbjct: 117 GAEFISYDPETGTWVFKVKHF 137

Length = 137
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional Back     alignment and domain information
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32 Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional Back     alignment and domain information
>gnl|CDD|227938 COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion] Back     alignment and domain information
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 996
PF04096141 Nucleoporin2: Nucleoporin autopeptidase; InterPro: 100.0
KOG0845903 consensus Nuclear pore complex, Nup98 component (s 99.88
KOG0845903 consensus Nuclear pore complex, Nup98 component (s 99.25
KOG3091508 consensus Nuclear pore complex, p54 component (sc 96.79
KOG3091508 consensus Nuclear pore complex, p54 component (sc 95.33
PF13634113 Nucleoporin_FG: Nucleoporin FG repeat region 91.07
PF13634113 Nucleoporin_FG: Nucleoporin FG repeat region 90.89
>PF04096 Nucleoporin2: Nucleoporin autopeptidase; InterPro: IPR007230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information 
Probab=100.00  E-value=2.6e-50  Score=396.60  Aligned_cols=137  Identities=50%  Similarity=0.847  Sum_probs=121.6

Q ss_pred             CceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCC----ceEEEccceEEEccCCCCCCCCCc
Q 001920          833 DYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLE----SLVQFNNREVIVYMDDSKKPPVGQ  908 (996)
Q Consensus       833 gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD----~IV~f~~r~V~VYpdd~~KPpvGe  908 (996)
                      ||||+|||+||++|+++|   |++|+||+|||+|||+|+|++||||++||||    +||+|++++|+||||+..|||+|+
T Consensus         1 ~Y~~~Psl~eL~~m~~~~---l~~V~~F~Vgr~g~G~I~f~~pVDl~~ldld~~~~~iV~~~~~~v~VYpd~~~kPp~G~   77 (141)
T PF04096_consen    1 GYWTSPSLEELQKMSDEE---LKRVENFTVGREGYGSIEFLGPVDLSGLDLDDIFGKIVIFEPKEVTVYPDESEKPPVGE   77 (141)
T ss_dssp             TEEEES-HHHHHHSSCTT---CCSBESEEEEETTTEEEEESSEBE-TTSBCGCTBTTTEEEETTEEEESSSSSS--STTS
T ss_pred             CceEcCCHHHHHhcCHHh---hCccCCeEEEeccEEEEEECCceecccccchhccCCEEEEecCEEEEECCCCCCCCCCC
Confidence            799999999999999887   9999999999999999999999999999999    999999999999999999999999


Q ss_pred             cCccceEEEEecceecCCCCCcccCCCchHHHHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcc
Q 001920          909 GLNKPAEVTLLNIKCFDKKTGVQYKEGPKIEKYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHF  973 (996)
Q Consensus       909 GLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HF  973 (996)
                      ||||||+|||+||||+||+++++|+|+.+ .+|+++|+|+|+++|++||+||+++|+|+|+|+||
T Consensus        78 GLN~~A~ItL~~~~p~~~~~~~~i~d~~~-~~~~~~l~~~~~~~~~~FvsYd~~tG~W~F~V~HF  141 (141)
T PF04096_consen   78 GLNVPAIITLENCWPKDKSTREPIKDPSK-PRFEKKLKRLTEKMGAEFVSYDPETGTWVFRVEHF  141 (141)
T ss_dssp             TTCS-EEEEESS---BBTTTTCB--STTC-HHHHHHHHHHHHCTTSEEEEEETTTTEEEEEESS-
T ss_pred             CcCCCEEEEEEeeEecCCCCCccccCccH-HHHHHHHHHHHhcCCCEEEEEeCCCcEEEEEEecC
Confidence            99999999999999999999999998654 34999999999999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of autocatalytic serine endopeptidases belong to MEROPS peptidase family S59 (clan SP). The nuclear pore complex protein plays a role in bidirectional transport across the nucleoporin complex in nucleocytoplasmic transport. The mammalian nuclear pore complex (NPC) is comprised of approximately 50 unique proteins, collectively known as nucleoporins. A number of the peptides are synthesised as precursors and undergo self-catalyzed cleavage. The proteolytic cleavage site of yeast Nup145p has been mapped upstream of an evolutionary conserved serine residue. Cleavage occurs at the same site when a precursor is artificially expressed in Escherichia coli. A hydroxyl-containing residue is critical for the reaction, although a thiol-containing residue offers an acceptable replacement. In vitro kinetics experiments using a purified precursor molecule demonstrate that the cleavage is self-catalyzed and that the catalytic domain lies within the N-terminal moiety. Taken altogether, the data are consistent with a proteolytic mechanism involving an N>O acyl rearrangement and a subsequent ester intermediate uncovered in other self-processing proteins []. Nup98 is a component of the nuclear pore that plays its primary role in the export of RNAs. Nup98 is expressed in two forms, derived from alternate mRNA splicing. Both forms are processed into two peptides through autoproteolysis mediated by the C-terminal domain of hNup98. The three-dimensional structure of the C-terminal domain reveals a novel protein fold, and thus a new class of autocatalytic proteases. The structure further reveals that the suggested nucleoporin RNA binding motif is unlikely to bind to RNA []. The following nucleoporins share an ~150-residue C-terminal domain responsible for NPC targeting [, ]: Vertebrate Nup98, a component of the nuclear pore that plays its primary role in the export of RNAs. Yeast Nup100, plays an important role in several nuclear export and import pathways including poly(A)+ RNA and protein transport. Yeast Nup116, involved in mRNA export and protein transport. Yeast Nup145, involved in nuclear poly(A)+ RNA and tRNA export. The NUP C-terminal domains of Nup98 and Nup145 possess peptidase S59 autoproteolytic activity. The autoproteolytic sites of Nup98 and Nup145 each occur immediately C-terminal to the NUP C-terminal domain. Thus, although this domain occurs in the middle of each precursor polypeptide, it winds up at the C-terminal end of the N-terminal cleavage product. Cleavage of the peptide chains are necessary for the proper targeting to the nuclear pore [, ]. The NUP C-terminal domain adopts a predominantly beta-strand structure. The molecule consists of a six-stranded beta-sheet sandwiched against a two-stranded beta-sheet and flanked by alpha-helical regions. The N-terminal helical region consists of two short helices, whereas the stretch on the opposite side of molecule consists of a single, longer helix [, ].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 3PBP_E 2AIV_A 1KO6_A 2Q5X_A 2Q5Y_C 3KEP_A 3KES_A 3NF5_B 3TKN_I.
>KOG0845 consensus Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0845 consensus Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region Back     alignment and domain information
>PF13634 Nucleoporin_FG: Nucleoporin FG repeat region Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query996
2q5x_A155 Crystal Structure Of The C-Terminal Domain Of Hnup9 3e-26
2q5y_A152 Crystal Structure Of The C-Terminal Domain Of Hnup9 5e-25
1ko6_A187 Crystal Structure Of C-Terminal Autoproteolytic Dom 6e-25
3tkn_C152 Structure Of The Nup82-Nup159-Nup98 Heterotrimer Le 7e-25
3kep_A174 Crystal Structure Of The Autoproteolytic Domain Fro 9e-12
3nf5_A164 Crystal Structure Of The C-Terminal Domain Of Nucle 2e-11
3pbp_B148 Structure Of The Yeast Heterotrimeric Nup82-Nup159- 7e-11
2aiv_A149 Multiple Conformations In The Ligand-Binding Site O 1e-10
>pdb|2Q5X|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 155 Back     alignment and structure 
Iteration: 1

 Score =  117 bits (293), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 4/150 (2%)
Query: 829 LRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQ 888
           L +  YYT P + +LA K   E G C  V DF +GR GYGSI F G+ ++  L+L+ +V 
Sbjct: 4   LTKVGYYTIPSMDDLA-KITNEKGECI-VSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVH 61
Query: 889 FNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLK 946
              +EV+VY+DD++KPPVG+GLN+ AEVTL  +   DK +    K   ++    Y+  L+
Sbjct: 62  IRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLE 121
Query: 947 RKAEDQGAEFISYDPIKGEWKFSVNHFSEY 976
             +  QGA+F  Y P  G W F V+HF++Y
Sbjct: 122 AVSRKQGAQFKEYRPETGSWVFKVSHFAKY 151
>pdb|2Q5Y|A Chain A, Crystal Structure Of The C-Terminal Domain Of Hnup98 Length = 152 Back     alignment and structure
>pdb|1KO6|A Chain A, Crystal Structure Of C-Terminal Autoproteolytic Domain Of Nucleoporin Nup98 Length = 187 Back     alignment and structure
>pdb|3TKN|C Chain C, Structure Of The Nup82-Nup159-Nup98 Heterotrimer Length = 152 Back     alignment and structure
>pdb|3KEP|A Chain A, Crystal Structure Of The Autoproteolytic Domain From The Nuclear Pore Complex Component Nup145 From Saccharomyces Cerevisiae Length = 174 Back     alignment and structure
>pdb|3NF5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Nuclear Pore Complex Component Nup116 From Candida Glabrata Length = 164 Back     alignment and structure
>pdb|3PBP|B Chain B, Structure Of The Yeast Heterotrimeric Nup82-Nup159-Nup116 Nucleoporin Complex Length = 148 Back     alignment and structure
>pdb|2AIV|A Chain A, Multiple Conformations In The Ligand-Binding Site Of The Yeast Nuclear Pore Targeting Domain Of Nup116p Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query996
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 5e-65
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 2e-61
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 2e-60
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 3e-60
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 1e-58
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 5e-20
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 1e-12
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-11
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-08
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 8e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 6e-05
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-16
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-16
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 6e-16
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 8e-14
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 1e-12
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 9e-12
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-08
3mmy_B56 Nuclear pore complex protein NUP98; mRNA export, n 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 6e-06
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 1e-05
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 1e-04
3ghg_A562 Fibrinogen alpha chain; triple-stranded coiled coi 2e-04
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 3e-04
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Length = 155 Back     alignment and structure
 Score =  214 bits (547), Expect = 5e-65
 Identities = 61/155 (39%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 828 KLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLV 887
            L +  YYT P + +LA     +      V DF +GR GYGSI F G+ ++  L+L+ +V
Sbjct: 3   ILTKVGYYTIPSMDDLAKITNEK--GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 60

Query: 888 QFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGVQYKEG--PKIEKYKEML 945
               +EV+VY+DD++KPPVG+GLN+ AEVTL  +   DK +    K         Y+  L
Sbjct: 61  HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 120

Query: 946 KRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGD 980
           +  +  QGA+F  Y P  G W F V+HF++Y L D
Sbjct: 121 EAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Length = 148 Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysis, protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Length = 174 Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Length = 164 Back     alignment and structure
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Length = 187 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Length = 56 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Length = 562 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query996
2q5x_A155 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
1ko6_A187 Nuclear pore complex protein NUP98; nucleoporin, a 100.0
3kep_A174 Nucleoporin NUP145; nuclear pore complex, NUP145-N 100.0
3pbp_B148 Nucleoporin NUP116/NSP116; beta-propeller, mRNA ex 100.0
3nf5_A164 Nucleoporin NUP116; nuclear pore complex, glebs do 100.0
3mmy_B56 Nuclear pore complex protein NUP98; mRNA export, n 99.51
1ko6_B64 Nuclear pore complex protein NUP98; nucleoporin, a 88.84
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C Back     alignment and structure
Probab=100.00  E-value=2.7e-57  Score=450.46  Aligned_cols=151  Identities=41%  Similarity=0.751  Sum_probs=139.3

Q ss_pred             CcCCCCceeccCHHHHHHhhhcCCCccccccCeEEeeeeeEEEEeCccccccCCCCCceEEEccceEEEccCCCCCCCCC
Q 001920          828 KLRRSDYYTEPRIQELAAKERAEPGFCRRVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYMDDSKKPPVG  907 (996)
Q Consensus       828 kL~~~gYyt~PSieeL~~ms~~e~g~L~~V~nFtVGR~GyG~I~FlgpVDL~~lDLD~IV~f~~r~V~VYpdd~~KPpvG  907 (996)
                      +|+++||||+||||||++|.+++ + +++|+||+|||+|||+|+|++||||++||||+||+|++|+|+||||++.|||+|
T Consensus         3 ~l~~~~Y~~~PsieeL~~~~~~~-~-~~~V~~FtVgR~gyG~I~f~~pvDl~~ldLd~IV~~~~~~v~VYpd~~~KPpvG   80 (155)
T 2q5x_A            3 ILTKVGYYTIPSMDDLAKITNEK-G-ECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVG   80 (155)
T ss_dssp             BCCSTTEEEESCHHHHHHHSCTT-S-CCEEEEEEEEETTTEEEEEEEEEECTTCBHHHHEEEETTEEEECC----CCCTT
T ss_pred             EEeCCCeEEcCCHHHHHhhhhhc-c-ccEECCEEEEeeeEEEEEeCcceeeccCCcccEEEEccCEEEEeCCCCCCCCCC
Confidence            69999999999999999996543 3 349999999999999999999999999999999999999999999999999999


Q ss_pred             ccCccceEEEEecceecCCCCCcccCCCchHH--HHHHHHHHHhhhCCCeEEEEeCCCcEEEEEECcccccCCCC
Q 001920          908 QGLNKPAEVTLLNIKCFDKKTGVQYKEGPKIE--KYKEMLKRKAEDQGAEFISYDPIKGEWKFSVNHFSEYKLGD  980 (996)
Q Consensus       908 eGLNkpA~ITL~n~~p~dk~t~~~i~d~~~~~--k~~~~Lkk~te~~Ga~FvsYD~~tGtW~F~V~HFS~YGl~d  980 (996)
                      +||||||+|||+||||+||+++++|+|++++.  +|+++|||+|+++|++||+||+++|+|+|+|+|||+|||+|
T Consensus        81 ~GLN~~A~ITL~~~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d  155 (155)
T 2q5x_A           81 EGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD  155 (155)
T ss_dssp             BTTBSCEEEEECSCCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred             CCcCcCEEEEEeeeEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence            99999999999999999999999999987754  49999999999999999999999999999999999999987
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A* Back     alignment and structure
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A Back     alignment and structure
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata} Back     alignment and structure
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 996
g1ko6.1158 b.119.1.1 (A:,B:) C-terminal autoproteolytic domai 2e-63

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query996
g1ko6.1158 C-terminal autoproteolytic domain of nucleoporin n 100.0