Citrus Sinensis ID: 001926

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990-----

MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

ccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccEEccccccccccHHHHHHHHccccccccccEEEccccccEEEEEccccHHHHHHHHHHHcEEEEEEcccHHHHHHHHHHHccccccccccEEEccccccccccccccccccccccccccccEEEEEEccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHcccEEEccccccccEEEEcccccHHHHHHHHccccEEcHHHHHHHHHHHcccccccccccc

cccHHHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHEEEcccccccccEEEEEccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHcccccccccEccHHHHHHHHHHHHHHHHccEEEEEEccHHHHHccccccccccccHHcccccccccccccccccccccccEEEEcccHHHHHHHHHHHHHcEEEEccccHHHHHHHHHHHcccccEcccEEEEcccccccccccccccccccHHHHcccccEEEEEEccccccccccccEEEEEEEEEccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEccEcccccccccHHHHHHHHHcccEEEccccccEEEEEEcccccHHHHHHHccccEEEcHHHHHHHHHHHHccccccccccc

MNHVLKEQNKEILSRLLSLIkshepplfssnqIKEMEAMLSSLVTRANdkekdmlamhgvngkdsnivtenavndlnfkekvplpvdslmqnkpleaskpgppgyrsrgvllplldphkvhdvdslpsptrettpsvpvqRALVVGDGMVKSWAAAAKLShnaevhktphyetdALRAFSSYqqkfgrnsffmnselpsptpseesgdgdgdtggeissatavdqpkpvnmptlgqqpvssqpmdisqpmdisSVQALTtannsapassgynpvvkpnpvvkapiksrdprlrfassnalnlnhqpapilhnapkvepvgrvmssrkqktveepvldgpalkrqrngfensgvvrdekniygsggwledtdmfepqiMNRNLlvdsaesnsrkldngatspitsgtpnvvvsgnepapattpsttvslpALLKDIAVNPTMLLNILKMGQQQKLAADAqqksndssmntmhppipssippvsvtcsipsgilskpmdelgkvrmkprdprrvlhgnalqrsgslgpefktdgpsapctqgskeNLNFQkqlgapeakpvlsqsvlqpdiTQQFTKNLKHIADFmsvsqpltsepmvsqnspiqpgqiksgaDMKAVVtnhddkqtgtgsgpeagpvgahpqsawgdvehLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDhtllnsakfhevdpvhDEILRKkeeqdrekphrhlfrfphmgmwtklrpGIWTFLERASKLFEMHLYTMGNKLYATEMakvldpkgvlfagrvisrgddgdpfdgdervpkskdlegvlGMESAVVIIddsvrvwphnkLNLIVVERYtyfpcsrrqfgllgpslleidhdersedgtlasSLGVIERLHKIFFShqslddvdVRNILAAEQRKILAGCRIvfsrvfpvgeanphlhplwqTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTgrfvvhpgwvEASALLYRRAneqdfaikp

MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMhgvngkdsniVTENAVNDLNFKEKVplpvdslmqnkpleaskpgppgyRSRGVLLPLLDPHKVHDVDSlpsptrettpsvpvQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNsapassgynpvvkpnPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSsrkqktveepvldgpalkrqrngfensgvvrdekniyGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRkldngatspitsgtpnvVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVrmkprdprrvlhgnalqrsgslgpefKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLnsakfhevdpvhdeilrkkeeqdrekphrhlfrfphmgmwtKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVisrgddgdpfdgdervpkskdlegvlGMESAVViiddsvrvwphNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNselpsptpseesgdgdgdtggeissATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYnpvvkpnpvvkapIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEpapattpsttvslpallKDIAVNPTMLLNILKMGqqqklaadaqqkSNDSSMNTMHppipssippvsvtcsipsGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKlclvldldhtllNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

***************************************************************************************************************L***************************QRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFS*Y*******************************************************************************************************************************************************************************KNIYGSGGWLEDTDMFEPQIMN***********************************************SLPALLKDIAVNPTMLLNILKM********************************************************************************************************************************L*HI*****************************************************************DVEHLFE************************FSARKLCLVLDLDHTLLNSAKFHEVDPVH*****************HLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS*********************GVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDH*******TLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRA*********

***********ILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLA****************************************************GVLLPLLDPHKVHDVDSL**********VPVQRALVVGDGMVKSWA******************TDALRAFSSYQQKFG***F************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EHL********************************CLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLD*VDV**ILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDV**************PVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSE*****************GGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKM*******************NTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPL**********PIQPGQIKSGADMKAVVTNH*******************PQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKK********HRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

**HVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGVNG***********************************SKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSEL******************************PVNMPTLG*QP**********************A****P*********************RDPRLRFASSNALN***********APK*EPVGRVM*******VEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRN*******************************************TVSLPALLKDIAVNPTMLLNILKMGQQQK********************************************ELGKVRMKPRDPRRVLHGN*******************************************************************************************************************************WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPS********RSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAI**

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MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQxxxxxxxxxxxxxxxxxxxxxMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPLEASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKSRDPRLRFASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDSSMNTMHPPIPSSIPPVSVTCSIPSGILSKPMDELGKVRMKPRDPRRVLHGNALQRSGSLGPEFKTDGPSAPCTQGSKENLNFQKQLGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAVVTNHDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		995	2.2.26 [Sep-21-2011]
Q8LL04		1241	RNA polymerase II C-termi	yes	no	0.938	0.752	0.519	0.0
Q00IB6		440	RNA polymerase II C-termi	no	no	0.297	0.672	0.446	2e-71
Q7TSG2		960	RNA polymerase II subunit	yes	no	0.159	0.165	0.366	9e-21
Q9Y5B0		961	RNA polymerase II subunit	yes	no	0.151	0.157	0.362	3e-20
Q9P376		723	RNA polymerase II subunit	yes	no	0.172	0.237	0.333	9e-19
Q03254		732	RNA polymerase II subunit	yes	no	0.189	0.258	0.288	2e-13
Q8SV03		411	RNA polymerase II subunit	yes	no	0.144	0.350	0.279	3e-11
Q66KM5		466	CTD small phosphatase-lik	no	no	0.187	0.401	0.279	3e-08
Q3KQB6		466	CTD small phosphatase-lik	N/A	no	0.187	0.401	0.279	3e-08
Q801R4		466	CTD small phosphatase-lik	N/A	no	0.187	0.401	0.270	3e-08

>sp\|Q8LL04\|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2	Back alignment and function desciption

 Score =  900 bits (2325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1045 (51%), Positives = 662/1045 (63%), Gaps = 111/1045 (10%)

Query: 1    MNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSLVTRANDKEKDMLAMHGV 60
            MN++ KE+NKE +SRLL+L+  H     S NQ  E+E M         D  +  +A+   
Sbjct: 258  MNNISKERNKETMSRLLTLVNDHFSQFLSFNQKNEIETM-------NQDLSRSAIAVFAG 310

Query: 61   NGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNK-PLEASKPGPPGYRSRGVLLPLLDPHK 119
               + N      VN +      P   DS +  K   E++  G    RSR  +LPLLD HK
Sbjct: 311  TSSEEN------VNQMT----QPSNGDSFLAKKLTSESTHRGAAYLRSRLPMLPLLDLHK 360

Query: 120  VHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEVHKTPHYETDALRAF 179
             HD DSLPSPTRETTPS+PV         MV+      + S   E  K   YE+DA +A 
Sbjct: 361  DHDADSLPSPTRETTPSLPVNGR----HTMVRPGFPVGRESQTTEGAKVYSYESDARKAV 416

Query: 180  SSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAV------------DQPK 227
            S+YQQKFG NS F   +LPSPTPS E  DG+GD GGE+SS+               D P 
Sbjct: 417  STYQQKFGLNSVFKTDDLPSPTPSGEPNDGNGDVGGEVSSSVVKSSNPGSHLIYGQDVPL 476

Query: 228  PVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYNPVVKPNPVVKAPIKS 287
            P N  +    PV++       P  +S + A+     SAP +S        +  VK   KS
Sbjct: 477  PSNFNSRSM-PVANSVSSTVPPHHLS-IHAI-----SAPTAS--------DQTVKPSAKS 521

Query: 288  RDPRLRFASSNALNLN--HQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALKRQR 345
            RDPRLR A  +A N+      +    N  KVE    +++ RKQK  +E ++DGPA KRQ+
Sbjct: 522  RDPRLRLAKPDAANVTIYSYSSGDARNLSKVELSADLVNPRKQKAADEFLIDGPAWKRQK 581

Query: 346  NGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPITSG 405
            +         D     G+GGWLEDT+       +  LL    ES  R ++NG TS  +S 
Sbjct: 582  SD-------TDAPKAAGTGGWLEDTE-------SSGLL--KLESKPRLIENGVTSMTSSV 625

Query: 406  TPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQQQKLAADAQQKSNDS 465
             P   VS ++    T  + T SL +LLKDIAVNPTMLLN+LKMG++QK+   A QK  D 
Sbjct: 626  MPTSAVSVSQKV-RTASTDTASLQSLLKDIAVNPTMLLNLLKMGERQKVPEKAIQKPMDP 684

Query: 466  SMNTMHPPIPSSIPPVSVTCSIP-----------SGIL-----SKPMDELGKVRMKPRDP 509
                   P  S  P VS   SIP           SG+L     + P  E G +RMKPRDP
Sbjct: 685  R-RAAQLPGSSVQPGVSTPLSIPASNALAANSLNSGVLQDSSQNAPAAESGSIRMKPRDP 743

Query: 510  RRVLHGNALQRS-GSLGPEFKTDGPSAPCT---QGSKENLNFQKQLGAPE-------AKP 558
            RR+LHG+ LQR+  S+  + K + PS   T   +G  E+L    QL   +       +K 
Sbjct: 744  RRILHGSTLQRTDSSMEKQTKVNDPSTLGTLTMKGKAEDLETPPQLDPRQNISQNGTSKM 803

Query: 559  VLSQSVLQ---PDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKA 615
             +S  +L    PD + QFTKNLK IAD + VSQ L + P     + +   Q+K+  D+K 
Sbjct: 804  KISGELLSGKTPDFSTQFTKNLKSIADMVVVSQQLGNPP-----ASMHSVQLKTERDVKH 858

Query: 616  VVTN-----HDDKQTGTGSGPEAGPVGAHPQSAWGDVEHLFEGYDDQQKAAIQKERTRRL 670
              +N      D   +       AGP  +   ++WGDVEHLFEGYDD Q+ AIQ+ER RRL
Sbjct: 859  NPSNPNAQDEDVSVSAASVTAAAGPTRS--MNSWGDVEHLFEGYDDIQRVAIQRERVRRL 916

Query: 671  EEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHM 730
            EEQ KMF+++KL LVLD+DHTLLNSAKF+EV+  H+EILRKKEEQDREKP+RHLFRF HM
Sbjct: 917  EEQNKMFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHM 976

Query: 731  GMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGD 790
            GMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDPKGVLF GRVIS+GDDGD
Sbjct: 977  GMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRVISKGDDGD 1036

Query: 791  PFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLL 850
            P DGDERVPKSKDLEGV+GMES+VVIIDDSVRVWP +K+NLI VERY YFPCSRRQFGLL
Sbjct: 1037 PLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLL 1096

Query: 851  GPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRI 910
            GPSLLE+D DE  E+GTLASSL VIE++H+ FFSH SLD+VDVRNILA+EQRKILAGCRI
Sbjct: 1097 GPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRI 1156

Query: 911  VFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFV 970
            VFSR+ PVGEA PHLHPLWQTAEQFGAVCT  +D+ VTHVV NSLGTDKVNWAL+ GRFV
Sbjct: 1157 VFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFV 1216

Query: 971  VHPGWVEASALLYRRANEQDFAIKP 995
            VHPGWVEASA LY+RANE  +AI P
Sbjct: 1217 VHPGWVEASAFLYQRANENLYAINP 1241

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp\|Q00IB6\|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1	Back alignment and function description

>sp\|Q7TSG2\|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1	Back alignment and function description

>sp\|Q9Y5B0\|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3	Back alignment and function description

>sp\|Q9P376\|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1	Back alignment and function description

>sp\|Q03254\|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1	Back alignment and function description

>sp\|Q8SV03\|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1	Back alignment and function description

>sp\|Q66KM5\|CTSL2_XENTR CTD small phosphatase-like protein 2 OS=Xenopus tropicalis GN=ctdspl2 PE=2 SV=1	Back alignment and function description

>sp\|Q3KQB6\|CTL2B_XENLA CTD small phosphatase-like protein 2-B OS=Xenopus laevis GN=ctdspl2-b PE=2 SV=1	Back alignment and function description

>sp\|Q801R4\|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis GN=ctdspl2-a PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		995
255543174		1195	RNA polymerase II ctd phosphatase, putat	0.916	0.763	0.625	0.0
224053553		1117	predicted protein [Populus trichocarpa]	0.953	0.849	0.618	0.0
359473774		1238	PREDICTED: RNA polymerase II C-terminal	0.956	0.768	0.601	0.0
296088169		1184	unnamed protein product [Vitis vinifera]	0.891	0.749	0.575	0.0
356523718		1244	PREDICTED: RNA polymerase II C-terminal	0.970	0.776	0.550	0.0
356567192		1221	PREDICTED: RNA polymerase II C-terminal	0.950	0.774	0.549	0.0
449487451		1249	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.949	0.756	0.568	0.0
449445782		1249	PREDICTED: RNA polymerase II C-terminal	0.949	0.756	0.568	0.0
357502711		1213	RNA polymerase II C-terminal domain phos	0.920	0.755	0.522	0.0
56547717		1227	putative transcription regulator CPL1 [S	0.955	0.775	0.520	0.0

>gi\|255543174\|ref\|XP_002512650.1\| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi\|223548611\|gb\|EEF50102.1\| RNA polymerase II ctd phosphatase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/982 (62%), Positives = 721/982 (73%), Gaps = 70/982 (7%)

Query: 49   DKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKP---LEASKPGPPGY 105
            +KEK+ L    VN KD+++  +++ +D++   K  LP DS + NK    +E  K G   +
Sbjct: 249  EKEKEPLISTVVNKKDNDVNGKSSGHDMSAVNK--LPTDSFVNNKANLSIEGPKTGVSSF 306

Query: 106  RSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKSWAAAAKLSHNAEV 165
            +SR  LLPLLD HK HD DSLPSPTRE+   +P  R L     MV         + N+ +
Sbjct: 307  KSRAALLPLLDLHKDHDADSLPSPTRESALPLPAYRVLT--PKMVLD-------TGNSRM 357

Query: 166  HKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGDTGGEISSATAVDQ 225
            H    YETDAL+A SSYQQKF ++SF +   LPSPTPSEESG+GDGDTGGE+SS+ +V  
Sbjct: 358  HP---YETDALKAVSSYQQKFSKSSFALTDRLPSPTPSEESGNGDGDTGGEVSSSLSVSS 414

Query: 226  PKPVNMPTLGQQPVSSQPMDISQP-MDISSVQALTTANNSAPASSGYNPVVKPNPVVKAP 284
             +P N  T GQ   S     IS P MD SS+  + +  ++  ASS       P+  VKA 
Sbjct: 415  FRPANPLTSGQSNAS-----ISLPRMDGSSLPGVISIKSAVRASSA------PSLTVKAS 463

Query: 285  IKSRDPRLRF--ASSNALNLNHQPAPILHNAPKVEPVGRVMSSRKQKTVEEPVLDGPALK 342
             KSRDPRLRF  + SNAL+ NH+  P++ N  KVEP+G  M+ ++QK V++P+ DG +LK
Sbjct: 464  AKSRDPRLRFVNSDSNALDQNHRAVPVV-NTLKVEPIGGTMNKKRQKIVDDPIPDGHSLK 522

Query: 343  RQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESNSRKLDNGATSPI 402
            RQ+N  ENSGVVRD K + GSGGWLEDTDM  PQ MN+N LVD+AES+ R+ D G     
Sbjct: 523  RQKNALENSGVVRDVKTMVGSGGWLEDTDMVGPQTMNKNQLVDNAESDPRRKDGGGVCTS 582

Query: 403  TSGTPNVVVSGNEPAPATTPS------------TTVSLPALLKDIAVNPTMLLNILKMGQ 450
            +S   +V +SG E  P T  S            +T ++P LLK+IAVNPTML+NILKMGQ
Sbjct: 583  SSCISSVNISGTEQIPVTGTSVPIGGELVPVKGSTAAIPDLLKNIAVNPTMLINILKMGQ 642

Query: 451  QQKLAADAQQKSNDSSMNTMHPPIPSS-IPPVSVTCSIPSGILSKPM------------D 497
            QQ+LA +AQQK  D + +T +P   +S +  V V  +  SGIL +P             D
Sbjct: 643  QQRLALEAQQKPVDPAKSTTYPLNSNSMLGTVPVVGAAHSGILPRPAGTVQVSPQLGTAD 702

Query: 498  ELGKVRMKPRDPRRVLHGNALQRSGSLGPE-FKTDGPSAPCTQGSKENLNFQKQLGAPEA 556
            +LGK+RMKPRDPRRVLH NALQR+GS+G E  KT+  S P  Q +K+N N QKQ G  E 
Sbjct: 703  DLGKIRMKPRDPRRVLHNNALQRNGSMGSEHLKTNLTSIPINQETKDNQNLQKQEGQVEK 762

Query: 557  KPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSGADMKAV 616
            KPV  QS+  PDI+  FTKNLK+IAD +SVS   TS+P+V QN   QP        M+  
Sbjct: 763  KPVPLQSLALPDISMPFTKNLKNIADIVSVSHASTSQPLVPQNPASQP--------MRTT 814

Query: 617  VTNHDDKQTGTGSGPEAGPVGA---HPQSAWGDVEHLFEGYDDQQKAAIQKERTRRLEEQ 673
            +++ D +  G GS P A    A     Q+AWGDVEHLFEGY+DQQKAAIQ+ER RR+EEQ
Sbjct: 815  ISSSD-QFLGIGSAPGAAAAAAAGPRTQNAWGDVEHLFEGYNDQQKAAIQRERARRIEEQ 873

Query: 674  KKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMW 733
            KK+FSARKLCLVLDLDHTLLNSAKF EVDPVHDEILRKKEEQDREK HRHLFRFPHMGMW
Sbjct: 874  KKLFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKAHRHLFRFPHMGMW 933

Query: 734  TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD 793
            TKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAKVLDP GVLF GRVISRGDDG+PFD
Sbjct: 934  TKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPTGVLFNGRVISRGDDGEPFD 993

Query: 794  GDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPS 853
            GDER+PKSKDLEGVLGMES VVI+DDSVRVWPHNKLNLIVVERY YFPCSRRQFGL GPS
Sbjct: 994  GDERIPKSKDLEGVLGMESGVVIMDDSVRVWPHNKLNLIVVERYIYFPCSRRQFGLPGPS 1053

Query: 854  LLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGCRIVFS 913
            LLEIDHDER EDGTLA SL VIER+H+ FF+H SLD+ DVRNILA+EQRKILAGCRIVFS
Sbjct: 1054 LLEIDHDERPEDGTLACSLAVIERIHQNFFTHPSLDEADVRNILASEQRKILAGCRIVFS 1113

Query: 914  RVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRFVVHP 973
            RVFPVGEANPHLHPLWQTAEQFGAVCT  ID+QVTHVVANSLGTDKVNWALSTGRFVV+P
Sbjct: 1114 RVFPVGEANPHLHPLWQTAEQFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVYP 1173

Query: 974  GWVEASALLYRRANEQDFAIKP 995
            GWVEASALLYRRANEQDFAIKP
Sbjct: 1174 GWVEASALLYRRANEQDFAIKP 1195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224053553\|ref\|XP_002297869.1\| predicted protein [Populus trichocarpa] gi\|222845127\|gb\|EEE82674.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359473774\|ref\|XP_002266931.2\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296088169\|emb\|CBI35661.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356523718\|ref\|XP_003530482.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356567192\|ref\|XP_003551805.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449487451\|ref\|XP_004157633.1\| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449445782\|ref\|XP_004140651.1\| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357502711\|ref\|XP_003621644.1\| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula] gi\|355496659\|gb\|AES77862.1\| RNA polymerase II C-terminal domain phosphatase-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|56547717\|gb\|AAV92930.1\| putative transcription regulator CPL1 [Solanum lycopersicum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LL04	CPL3_ARATH	3, ., 1, ., 3, ., 1, 6	0.5196	0.9386	0.7526	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3.16	0.914
3rd Layer	3.1.3	0.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I7873	hypothetical protein (1117 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		995
TIGR02250		156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	4e-63
smart00577		148	smart00577, CPDc, catalytic domain of ctd-like pho	1e-47
pfam03031		153	pfam03031, NIF, NLI interacting factor-like phosph	1e-24
TIGR02251		162	TIGR02251, HIF-SF_euk, Dullard-like phosphatase do	1e-09
COG5190		390	COG5190, FCP1, TFIIF-interacting CTD phosphatases,	6e-08
smart00292		78	smart00292, BRCT, breast cancer carboxy-terminal d	1e-07
pfam00533		77	pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain	7e-07
cd00027		72	cd00027, BRCT, Breast Cancer Suppressor Protein (B	3e-06
pfam12738		63	pfam12738, PTCB-BRCT, twin BRCT domain	3e-04

>gnl\|CDD\|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

 Score =  210 bits (536), Expect = 4e-63
 Identities = 72/168 (42%), Positives = 94/168 (55%), Gaps = 15/168 (8%)

Query: 676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGMW-- 733
           +   +KL LVLDLD TL+++ K   +           EE + E   R L +F    MW  
Sbjct: 1   LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKY---DIEEPNSE-TRRDLRKFNLGTMWYL 56

Query: 734 TKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFD 793
           TKLRP +  FL+ ASKL+EMH+YTMG + YA  +AK++DP G  F  R+ISR + G    
Sbjct: 57  TKLRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGS--- 113

Query: 794 GDERVPKSKDLEGVLG-MESAVVIIDDSVRVWPHNKLNLIVVERYTYF 840
                P +K L  +    ES VVIIDD   VWP +K NLI +E Y YF
Sbjct: 114 -----PHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl\|CDD\|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases	Back alignment and domain information

>gnl\|CDD\|217328 pfam03031, NIF, NLI interacting factor-like phosphatase	Back alignment and domain information

>gnl\|CDD\|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain	Back alignment and domain information

>gnl\|CDD\|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>gnl\|CDD\|214602 smart00292, BRCT, breast cancer carboxy-terminal domain	Back alignment and domain information

>gnl\|CDD\|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain	Back alignment and domain information

>gnl\|CDD\|237994 cd00027, BRCT, Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain	Back alignment and domain information

>gnl\|CDD\|193214 pfam12738, PTCB-BRCT, twin BRCT domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		995
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250		156	FCP1_euk FCP1-like phosphatase, phosphatase domain	100.0
KOG1605		262	consensus TFIIF-interacting CTD phosphatase, inclu	100.0
TIGR02251		162	HIF-SF_euk Dullard-like phosphatase domain. This d	99.97
PF03031		159	NIF: NLI interacting factor-like phosphatase; Inte	99.96
TIGR02245		195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.95
KOG2832		393	consensus TFIIF-interacting CTD phosphatase, inclu	99.88
smart00577		148	CPDc catalytic domain of ctd-like phosphatases.	99.84
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	99.8
COG5190		390	FCP1 TFIIF-interacting CTD phosphatases, including	99.5
PF12738		63	PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W	99.42
PF00533		78	BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP	99.35
KOG3226		508	consensus DNA repair protein [Replication, recombi	99.29
smart00292		80	BRCT breast cancer carboxy-terminal domain.	99.19
cd00027		72	BRCT Breast Cancer Suppressor Protein (BRCA1), car	99.17
PLN03122		815	Poly [ADP-ribose] polymerase; Provisional	98.47
PLN03123		981	poly [ADP-ribose] polymerase; Provisional	98.41
KOG1929		811	consensus Nucleotide excision repair factor NEF2,	98.17
KOG1929		811	consensus Nucleotide excision repair factor NEF2,	97.86
COG4996		164	Predicted phosphatase [General function prediction	97.8
PRK14350		669	ligA NAD-dependent DNA ligase LigA; Provisional	97.75
KOG0323		635	consensus TFIIF-interacting CTD phosphatases, incl	97.74
PRK07956		665	ligA NAD-dependent DNA ligase LigA; Validated	97.62
KOG3524		850	consensus Predicted guanine nucleotide exchange fa	97.6
PRK14351		689	ligA NAD-dependent DNA ligase LigA; Provisional	97.59
PRK06063		313	DNA polymerase III subunit epsilon; Provisional	97.56
cd01427		139	HAD_like Haloacid dehalogenase-like hydrolases. Th	97.56
COG0272		667	Lig NAD-dependent DNA ligase (contains BRCT domain	97.46
PRK06195		309	DNA polymerase III subunit epsilon; Validated	97.42
TIGR01685		174	MDP-1 magnesium-dependent phosphatase-1. This mode	97.39
KOG3548		1176	consensus DNA damage checkpoint protein RHP9/CRB2/	97.38
TIGR01681		128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	97.37
TIGR01684		301	viral_ppase viral phosphatase. These proteins also	97.19
TIGR00575		652	dnlj DNA ligase, NAD-dependent. The member of this	97.18
PF12689		169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.07
PHA03398		303	viral phosphatase superfamily protein; Provisional	97.06
KOG0966		881	consensus ATP-dependent DNA ligase IV [Replication	97.05
KOG2043		896	consensus Signaling protein SWIFT and related BRCT	96.99
TIGR01662		132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	96.94
TIGR01686		320	FkbH FkbH-like domain. The C-terminal portion of t	96.67
COG5275		276	BRCT domain type II [General function prediction o	96.64
KOG4362		684	consensus Transcriptional regulator BRCA1 [Replica	96.63
TIGR01261		161	hisB_Nterm histidinol-phosphatase. This model desc	96.61
PHA02530		300	pseT polynucleotide kinase; Provisional	96.37
TIGR00338		219	serB phosphoserine phosphatase SerB. Phosphoserine	96.36
TIGR01489		188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	96.31
PF05152		297	DUF705: Protein of unknown function (DUF705); Inte	96.25
KOG2481		570	consensus Protein required for normal rRNA process	96.23
TIGR01656		147	Histidinol-ppas histidinol-phosphate phosphatase f	96.21
TIGR01664		166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	96.15
TIGR01672		237	AphA HAD superfamily (subfamily IIIB) phosphatase,	96.14
PRK08942		181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	96.06
TIGR00213		176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	96.03
TIGR01533		266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	95.96
COG5163		591	NOP7 Protein required for biogenesis of the 60S ri	95.72
TIGR02253		221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	94.75
PF13419		176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	94.52
PRK11009		237	aphA acid phosphatase/phosphotransferase; Provisio	94.47
PRK05446		354	imidazole glycerol-phosphate dehydratase/histidino	94.47
KOG3109		244	consensus Haloacid dehalogenase-like hydrolase [Ge	94.38
KOG3524		850	consensus Predicted guanine nucleotide exchange fa	94.2
PRK08238		479	hypothetical protein; Validated	93.92
TIGR02254		224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	93.58
TIGR01449		213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	93.4
TIGR01689		126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	93.05
PRK13288		214	pyrophosphatase PpaX; Provisional	92.98
TIGR01509		183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	92.97
PLN02770		248	haloacid dehalogenase-like hydrolase family protei	92.88
PRK11133		322	serB phosphoserine phosphatase; Provisional	92.7
TIGR01428		198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	92.63
TIGR01663		526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	92.53
TIGR01454		205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	92.39
PRK06769		173	hypothetical protein; Validated	92.35
PF08645		159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	92.3
PLN03243		260	haloacid dehalogenase-like hydrolase; Provisional	92.28
TIGR01993		184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	92.1
TIGR01668		170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	92.04
PRK09449		224	dUMP phosphatase; Provisional	92.01
PRK13222		226	phosphoglycolate phosphatase; Provisional	91.96
TIGR01422		253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	91.33
PRK10563		221	6-phosphogluconate phosphatase; Provisional	91.15
COG2179		175	Predicted hydrolase of the HAD superfamily [Genera	90.74
TIGR01459		242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	90.73
PF13344		101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	90.46
PRK10826		222	2-deoxyglucose-6-phosphatase; Provisional	90.15
PRK00192		273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	90.06
PRK13226		229	phosphoglycolate phosphatase; Provisional	89.93
PRK14988		224	GMP/IMP nucleotidase; Provisional	89.59
TIGR01675		229	plant-AP plant acid phosphatase. This model explic	89.31
COG1011		229	Predicted hydrolase (HAD superfamily) [General fun	88.99
PRK11587		218	putative phosphatase; Provisional	88.79
PRK10725		188	fructose-1-P/6-phosphogluconate phosphatase; Provi	88.78
PF08282		254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	88.71
COG2503		274	Predicted secreted acid phosphatase [General funct	88.65
PLN02575		381	haloacid dehalogenase-like hydrolase	88.44
TIGR01670		154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	88.33
TIGR02009		185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	88.27
COG0561		264	Cof Predicted hydrolases of the HAD superfamily [G	88.17
TIGR01456		321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	87.68
PRK13223		272	phosphoglycolate phosphatase; Provisional	87.37
PRK09456		199	?-D-glucose-1-phosphatase; Provisional	86.97
TIGR01487		215	SPP-like sucrose-phosphate phosphatase-like hydrol	86.93
PRK09552		219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	86.88
TIGR02252		203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	86.82
PTZ00445		219	p36-lilke protein; Provisional	86.56
TIGR03333		214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	86.55
TIGR02461		225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	86.16
PLN02779		286	haloacid dehalogenase-like hydrolase family protei	85.75
PRK03669		271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	85.53
TIGR01548		197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	85.51
PRK10530		272	pyridoxal phosphate (PLP) phosphatase; Provisional	85.32
TIGR00099		256	Cof-subfamily Cof subfamily of IIB subfamily of ha	85.18
PRK13478		267	phosphonoacetaldehyde hydrolase; Provisional	85.13
PRK10513		270	sugar phosphate phosphatase; Provisional	84.97
TIGR02463		221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	84.77
TIGR01488		177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	84.52
TIGR02247		211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	84.03
TIGR01491		201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	83.64
PRK01158		230	phosphoglycolate phosphatase; Provisional	83.55
TIGR01549		154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	83.3
PLN02940		382	riboflavin kinase	83.29
TIGR03351		220	PhnX-like phosphonatase-like hydrolase. This clade	82.65
TIGR01544		277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	82.3
TIGR01484		204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	81.84
TIGR01691		220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	81.49
PRK15126		272	thiamin pyrimidine pyrophosphate hydrolase; Provis	81.41
PF11019		252	DUF2608: Protein of unknown function (DUF2608); In	81.29
TIGR01486		256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	81.25
PRK13225		273	phosphoglycolate phosphatase; Provisional	81.23
TIGR02137		203	HSK-PSP phosphoserine phosphatase/homoserine phosp	80.93
PRK13582		205	thrH phosphoserine phosphatase; Provisional	80.7
smart00775		157	LNS2 LNS2 domain. This domain is found in Saccharo	80.4
TIGR01482		225	SPP-subfamily Sucrose-phosphate phosphatase subfam	80.16

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.4e-47  Score=440.68  Aligned_cols=336  Identities=36%  Similarity=0.539  Sum_probs=272.1

Q ss_pred             ccCcchhhcCCchhhhhHhhHHHHhhhHHHhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcce
Q 001926          644 WGDVEHLFEGYDDQQKAAIQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRH  723 (995)
Q Consensus       644 ~~~f~~L~~g~~~~q~~~i~ke~akrL~~q~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~  723 (995)
                      ..-|+++..+++..+....   ..+.+..+..+++.++|+||+|||+||+|+.....+....  .+...+.. ....+..
T Consensus       112 ~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~--~~l~~~~~-~~~sn~d  185 (635)
T KOG0323|consen  112 GRSFDYLVKGLQLSNEMVA---FTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETE--KYLKEEAE-SVESNKD  185 (635)
T ss_pred             ccchhcccchhhhhhhhhh---hhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhh--hhcccccc-ccccccc
Confidence            4556788888776665433   5677878888888899999999999999998654333211  11111110 0001223


Q ss_pred             eEEec----cceEEEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCC
Q 001926          724 LFRFP----HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVP  799 (995)
Q Consensus       724 lF~~~----~~~~yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~  799 (995)
                      +|+++    ...||||+||++.+||++++++|||||||+|++.||..|+++|||+|.||++|||+|++..        ..
T Consensus       186 l~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dRIisrde~~--------~~  257 (635)
T KOG0323|consen  186 LFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDRIISRDESP--------FF  257 (635)
T ss_pred             ceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccceEEEecCCC--------cc
Confidence            44443    2578999999999999999999999999999999999999999999999999999999742        13


Q ss_pred             cccccccccCCC-CcEEEEcCCCcccccCccccccccceeeccCcccccCC-----------------------------
Q 001926          800 KSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGL-----------------------------  849 (995)
Q Consensus       800 yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI~IkpY~yF~~s~~q~g~-----------------------------  849 (995)
                      ..+||...+.+. ++||||||+.+||.+++.|+|.|.+|.||.+..+.+..                             
T Consensus       258 kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~  337 (635)
T KOG0323|consen  258 KTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRI  337 (635)
T ss_pred             cccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhcccccccccccCccccccc
Confidence            567777555665 89999999999999998899999999999987643321                             


Q ss_pred             --------------------------------------------CCCCcccccccCccchhhhHHHHHHHHHHHhhcccc
Q 001926          850 --------------------------------------------LGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSH  885 (995)
Q Consensus       850 --------------------------------------------p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~  885 (995)
                                                                  -..++.+...|+.+.|++|.+++++|+.||..||..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~  417 (635)
T KOG0323|consen  338 SEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAK  417 (635)
T ss_pred             ccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhhcccchhhhhc
Confidence                                                        123444555677788999999999999999999997


Q ss_pred             C-----CCCcchhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEecccCCCccEEEecCCCCHHH
Q 001926          886 Q-----SLDDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKV  960 (995)
Q Consensus       886 ~-----~L~~~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dvd~~VTHLVAss~gTeKv  960 (995)
                      .     .+...|||.+|.++++++|+||.++|||++|.+.+. +...+...+..+|+....+++..+||+|+.+.+|.|+
T Consensus       418 ~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~-~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~  496 (635)
T KOG0323|consen  418 YDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTD-ESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKV  496 (635)
T ss_pred             cccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCc-chhhhhhhhhcccceecccccchhhhHHhhccCccee
Confidence            5     356799999999999999999999999999987543 2345666789999999999999999999999999999


Q ss_pred             HHHHhcC-CcEecHHHHHHHHHhccCCCCCCCCCC
Q 001926          961 NWALSTG-RFVVHPGWVEASALLYRRANEQDFAIK  994 (995)
Q Consensus       961 ~~Alk~G-I~IVSPdWLedC~~~~kRvDEsdYlL~  994 (995)
                      .+|...+ ++||++.||+.|...|.+++|..|.+.
T Consensus       497 ~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~l~  531 (635)
T KOG0323|consen  497 YKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEPLD  531 (635)
T ss_pred             eccccccceeEechhHHHHHHHHhcchhccccccc
Confidence            9999876 999999999999999999999999863

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain	Back alignment and domain information

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain	Back alignment and domain information

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear	Back alignment and domain information

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245	Back alignment and domain information

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]	Back alignment and domain information

>smart00577 CPDc catalytic domain of ctd-like phosphatases	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A	Back alignment and domain information

>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1	Back alignment and domain information

>KOG3226 consensus DNA repair protein [Replication, recombination and repair]	Back alignment and domain information

>smart00292 BRCT breast cancer carboxy-terminal domain	Back alignment and domain information

>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain	Back alignment and domain information

>PLN03122 Poly [ADP-ribose] polymerase; Provisional	Back alignment and domain information

>PLN03123 poly [ADP-ribose] polymerase; Provisional	Back alignment and domain information

>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]	Back alignment and domain information

>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]	Back alignment and domain information

>COG4996 Predicted phosphatase [General function prediction only]	Back alignment and domain information

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]	Back alignment and domain information

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated	Back alignment and domain information

>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]	Back alignment and domain information

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional	Back alignment and domain information

>PRK06063 DNA polymerase III subunit epsilon; Provisional	Back alignment and domain information

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases	Back alignment and domain information

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK06195 DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1	Back alignment and domain information

>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]	Back alignment and domain information

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC	Back alignment and domain information

>TIGR01684 viral_ppase viral phosphatase	Back alignment and domain information

>TIGR00575 dnlj DNA ligase, NAD-dependent	Back alignment and domain information

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea	Back alignment and domain information

>PHA03398 viral phosphatase superfamily protein; Provisional	Back alignment and domain information

>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]	Back alignment and domain information

>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]	Back alignment and domain information

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA	Back alignment and domain information

>TIGR01686 FkbH FkbH-like domain	Back alignment and domain information

>COG5275 BRCT domain type II [General function prediction only]	Back alignment and domain information

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]	Back alignment and domain information

>TIGR01261 hisB_Nterm histidinol-phosphatase	Back alignment and domain information

>PHA02530 pseT polynucleotide kinase; Provisional	Back alignment and domain information

>TIGR00338 serB phosphoserine phosphatase SerB	Back alignment and domain information

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins	Back alignment and domain information

>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]	Back alignment and domain information

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain	Back alignment and domain information

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase	Back alignment and domain information

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672	Back alignment and domain information

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated	Back alignment and domain information

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	Back alignment and domain information

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family	Back alignment and domain information

>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253	Back alignment and domain information

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A	Back alignment and domain information

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional	Back alignment and domain information

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional	Back alignment and domain information

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]	Back alignment and domain information

>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]	Back alignment and domain information

>PRK08238 hypothetical protein; Validated	Back alignment and domain information

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254	Back alignment and domain information

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic	Back alignment and domain information

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase	Back alignment and domain information

>PRK13288 pyrophosphatase PpaX; Provisional	Back alignment and domain information

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	Back alignment and domain information

>PLN02770 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>PRK11133 serB phosphoserine phosphatase; Provisional	Back alignment and domain information

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II	Back alignment and domain information

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	Back alignment and domain information

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein	Back alignment and domain information

>PRK06769 hypothetical protein; Validated	Back alignment and domain information

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []	Back alignment and domain information

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional	Back alignment and domain information

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase	Back alignment and domain information

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668	Back alignment and domain information

>PRK09449 dUMP phosphatase; Provisional	Back alignment and domain information

>PRK13222 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase	Back alignment and domain information

>PRK10563 6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]	Back alignment and domain information

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459	Back alignment and domain information

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A	Back alignment and domain information

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional	Back alignment and domain information

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed	Back alignment and domain information

>PRK13226 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>PRK14988 GMP/IMP nucleotidase; Provisional	Back alignment and domain information

>TIGR01675 plant-AP plant acid phosphatase	Back alignment and domain information

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]	Back alignment and domain information

>PRK11587 putative phosphatase; Provisional	Back alignment and domain information

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional	Back alignment and domain information

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []	Back alignment and domain information

>COG2503 Predicted secreted acid phosphatase [General function prediction only]	Back alignment and domain information

>PLN02575 haloacid dehalogenase-like hydrolase	Back alignment and domain information

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family	Back alignment and domain information

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase	Back alignment and domain information

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]	Back alignment and domain information

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5	Back alignment and domain information

>PRK13223 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>PRK09456 ?-D-glucose-1-phosphatase; Provisional	Back alignment and domain information

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal	Back alignment and domain information

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed	Back alignment and domain information

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase	Back alignment and domain information

>PTZ00445 p36-lilke protein; Provisional	Back alignment and domain information

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase	Back alignment and domain information

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase	Back alignment and domain information

>PLN02779 haloacid dehalogenase-like hydrolase family protein	Back alignment and domain information

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed	Back alignment and domain information

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548	Back alignment and domain information

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional	Back alignment and domain information

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily	Back alignment and domain information

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional	Back alignment and domain information

>PRK10513 sugar phosphate phosphatase; Provisional	Back alignment and domain information

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein	Back alignment and domain information

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like	Back alignment and domain information

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase	Back alignment and domain information

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal	Back alignment and domain information

>PRK01158 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E	Back alignment and domain information

>PLN02940 riboflavin kinase	Back alignment and domain information

>TIGR03351 PhnX-like phosphonatase-like hydrolase	Back alignment and domain information

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544	Back alignment and domain information

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB	Back alignment and domain information

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase	Back alignment and domain information

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional	Back alignment and domain information

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria	Back alignment and domain information

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family	Back alignment and domain information

>PRK13225 phosphoglycolate phosphatase; Provisional	Back alignment and domain information

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein	Back alignment and domain information

>PRK13582 thrH phosphoserine phosphatase; Provisional	Back alignment and domain information

>smart00775 LNS2 LNS2 domain	Back alignment and domain information

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		995
3ef0_A		372	The Structure Of Fcp1, An Essential Rna Polymerase		8e-24
3ef1_A		442	The Structure Of Fcp1, An Essential Rna Polymerase		8e-17
3ef1_A		442	The Structure Of Fcp1, An Essential Rna Polymerase		2e-06

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Back alignment and structure

Iteration: 1

Score = 109 bits (272), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 145/319 (45%), Gaps = 78/319 (24%) Query: 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 792 + K RPG+ FL++ S+L+E+H+YTMG K YA E+AK++DP G LF RV+SR D G Sbjct: 73 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS-- 130 Query: 793 DGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERYTYF----------- 840 K L + + S VV+IDD VW N NLI V Y +F Sbjct: 131 ------LAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFL 183 Query: 841 -------------------------PCSRRQFGLL------GPS---LLEIDHD-ERSED 865 P +++Q LL PS L DH+ ER E Sbjct: 184 SGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEK 243 Query: 866 GTLASSLGVIERLHKIFFSHQSLDDVDVRN----------ILAAEQRKILAGCRIVFSRV 915 V++ +H +++ + +D+ R+ I+ ++K+L GCR++FS V Sbjct: 244 --------VLKDIHAVYYEEE--NDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGV 293 Query: 916 FPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRF-VVHPG 974 P+G + + + A FGA TH++A + T+KV A+S G VV Sbjct: 294 IPLG-VDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLN 352 Query: 975 WVEASALLYRRANEQDFAI 993 W+ S ++R E D+ + Sbjct: 353 WLTESLSQWKRLPESDYLL 371

PyMOL of 3ef0

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Back alignment and structure

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		995
3ef0_A		372	RNA polymerase II subunit A C-terminal domain phos	3e-83
3ef1_A		442	RNA polymerase II subunit A C-terminal domain phos	5e-37
3ef1_A		442	RNA polymerase II subunit A C-terminal domain phos	3e-30
3l3e_A		107	DNA topoisomerase 2-binding protein 1; BRCT domain	4e-19
2d8m_A		129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	5e-18
3pa6_A		107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	6e-16
2ght_A		181	Carboxy-terminal domain RNA polymerase II polypept	3e-15
3l46_A		112	Protein ECT2; alternative splicing, guanine-nucleo	4e-15
3qle_A		204	TIM50P; chaperone, mitochondrion, preprotein trans	4e-15
1wf6_A		132	Similar to S.pombe -RAD4+/CUT5+product (A40727); B	5e-15
2hhl_A		195	CTD small phosphatase-like protein; CTD phosphatas	3e-14
2cou_A		109	ECT2 protein; BRCT domain, RHO GTPase, structural	2e-13
3olc_X		298	DNA topoisomerase 2-binding protein 1; BRCT domain	1e-12
3olc_X		298	DNA topoisomerase 2-binding protein 1; BRCT domain	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1t15_A		214	Breast cancer type 1 susceptibility protein; prote	2e-11
1l0b_A		229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	4e-11
2nte_A		210	BARD-1, BRCA1-associated ring domain protein 1; BR	3e-10
2ebw_A		97	DNA repair protein REV1; A/B/A 3 layers, parallel	8e-10
3pc6_A		104	DNA repair protein XRCC1; BRCT domain, protein:pro	4e-09
3sqd_A		219	PAX-interacting protein 1; tandem BRCT domains, ce	1e-08
3l41_A		220	BRCT-containing protein 1; BRC1, BRCT domain, tand	4e-07
2etx_A		209	Mediator of DNA damage checkpoint protein 1; tande	4e-07
2jw5_A		106	DNA polymerase lambda; BRCT domain, family X polym	8e-07
3shq_A		320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	1e-06
3u3z_A		199	Microcephalin; DNA repair, cell cycle regulation,	1e-06
3al2_A		235	DNA topoisomerase 2-binding protein 1; BRCT domain	7e-06
3ii6_X		263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	4e-04

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372	Back alignment and structure

 Score =  273 bits (698), Expect = 3e-83
 Identities = 102/383 (26%), Positives = 166/383 (43%), Gaps = 67/383 (17%)

Query: 662 IQKERTRRLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPH 721
           ++ E  +RL ++      ++L L++DLD T++++     V     +      +  R+   
Sbjct: 5   LESENVKRLRQE------KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRS 58

Query: 722 RHLFRFPH---MGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLF 778
            +L   P       + K RPG+  FL++ S+L+E+H+YTMG K YA E+AK++DP G LF
Sbjct: 59  FNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLF 118

Query: 779 AGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLIVVERY 837
             RV+SR D G            K L  +   + S VV+IDD   VW  N  NLI V  Y
Sbjct: 119 QDRVLSRDDSGSLA--------QKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPY 169

Query: 838 TYFP-------------------------------CSRRQFGLLGPSLLEIDHDERSE-- 864
            +F                                 S R       +LLE +        
Sbjct: 170 EFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHT 229

Query: 865 -----DGTLASSLGVIERLHKIFFSHQ--------SLDDVDVRNILAAEQRKILAGCRIV 911
                D  L     V++ +H +++  +        +    +V  I+   ++K+L GCR++
Sbjct: 230 LLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLL 289

Query: 912 FSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGRF-V 970
           FS V P+G  +     + + A  FGA          TH++A  + T+KV  A+S G   V
Sbjct: 290 FSGVIPLGV-DVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKV 348

Query: 971 VHPGWVEASALLYRRANEQDFAI 993
           V   W+  S   ++R  E D+ +
Sbjct: 349 VKLNWLTESLSQWKRLPESDYLL 371

PyMOL of 3ef0

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442	Back alignment and structure

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442	Back alignment and structure

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129	Back alignment and structure

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107	Back alignment and structure

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181	Back alignment and structure

>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112	Back alignment and structure

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204	Back alignment and structure

>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132	Back alignment and structure

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195	Back alignment and structure

>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109	Back alignment and structure

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298	Back alignment and structure

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214	Back alignment and structure

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229	Back alignment and structure

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210	Back alignment and structure

>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97	Back alignment and structure

>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} PDB: 3pc8_A* 3qvg_B* 1cdz_A Length = 104	Back alignment and structure

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219	Back alignment and structure

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220	Back alignment and structure

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209	Back alignment and structure

>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Length = 106	Back alignment and structure

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320	Back alignment and structure

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199	Back alignment and structure

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235	Back alignment and structure

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Length = 263	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		995
3ef1_A		442	RNA polymerase II subunit A C-terminal domain phos	100.0
3ef0_A		372	RNA polymerase II subunit A C-terminal domain phos	100.0
3qle_A		204	TIM50P; chaperone, mitochondrion, preprotein trans	100.0
2ght_A		181	Carboxy-terminal domain RNA polymerase II polypept	99.97
3shq_A		320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.96
2hhl_A		195	CTD small phosphatase-like protein; CTD phosphatas	99.95
3l3e_A		107	DNA topoisomerase 2-binding protein 1; BRCT domain	99.75
3l46_A		112	Protein ECT2; alternative splicing, guanine-nucleo	99.73
2cou_A		109	ECT2 protein; BRCT domain, RHO GTPase, structural	99.72
2d8m_A		129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	99.7
3pa6_A		107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	99.67
4id3_A		92	DNA repair protein REV1; BRCT domain, protein bind	99.66
2ebw_A		97	DNA repair protein REV1; A/B/A 3 layers, parallel	99.59
3olc_X		298	DNA topoisomerase 2-binding protein 1; BRCT domain	99.55
1wf6_A		132	Similar to S.pombe -RAD4+/CUT5+product (A40727); B	99.49
3pc6_A		104	DNA repair protein XRCC1; BRCT domain, protein:pro	99.48
1l0b_A		229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	99.46
2nte_A		210	BARD-1, BRCA1-associated ring domain protein 1; BR	99.42
1t15_A		214	Breast cancer type 1 susceptibility protein; prote	99.41
2etx_A		209	Mediator of DNA damage checkpoint protein 1; tande	99.38
3sqd_A		219	PAX-interacting protein 1; tandem BRCT domains, ce	99.37
3al2_A		235	DNA topoisomerase 2-binding protein 1; BRCT domain	99.3
3olc_X		298	DNA topoisomerase 2-binding protein 1; BRCT domain	99.25
3u3z_A		199	Microcephalin; DNA repair, cell cycle regulation,	99.21
3l41_A		220	BRCT-containing protein 1; BRC1, BRCT domain, tand	99.17
2jw5_A		106	DNA polymerase lambda; BRCT domain, family X polym	99.09
3ii6_X		263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	99.07
1kzy_C		259	Tumor suppressor P53-binding protein 1; tandem-BRC	99.06
2vxb_A		241	DNA repair protein RHP9; BRCT, nucleus, cell cycle	99.03
1l7b_A		92	DNA ligase; BRCT, autostructure, structural genomi	98.95
3ii6_X		263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	98.95
2k6g_A		109	Replication factor C subunit 1; protein, BRCT, DNA	98.86
1z56_C		264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	98.79
2ebu_A		112	Replication factor C subunit 1; A/B/A 3 layers, pa	98.79
2ep8_A		100	Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r	98.77
2coe_A		120	Deoxynucleotidyltransferase, terminal variant; BRC	98.71
2cok_A		113	Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r	98.66
1z56_C		264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	98.56
1l0b_A		229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	98.55
3pc7_A		88	DNA ligase 3; DNA repair, BRCT domain, protein:pro	98.54
1t15_A		214	Breast cancer type 1 susceptibility protein; prote	98.45
3u3z_A		199	Microcephalin; DNA repair, cell cycle regulation,	98.35
2etx_A		209	Mediator of DNA damage checkpoint protein 1; tande	98.19
2dun_A		133	POL MU, DNA polymerase MU; layers A/B/A, parallel	98.18
1kzy_C		259	Tumor suppressor P53-binding protein 1; tandem-BRC	98.1
2nte_A		210	BARD-1, BRCA1-associated ring domain protein 1; BR	97.97
1dgs_A		667	DNA ligase; AMP complex, NAD+-dependent; HET: DNA	97.85
2owo_A		671	DNA ligase; protein-DNA complex, ligase-DNA comple	97.77
2wm8_A		187	MDP-1, magnesium-dependent phosphatase 1; haloacid	97.53
3m9l_A		205	Hydrolase, haloacid dehalogenase-like family; HAD	97.45
3sqd_A		219	PAX-interacting protein 1; tandem BRCT domains, ce	97.42
2fpr_A		176	Histidine biosynthesis bifunctional protein HISB;	97.39
3ib6_A		189	Uncharacterized protein; structural genomics, unkn	97.34
2pr7_A		137	Haloacid dehalogenase/epoxide hydrolase family; NP	97.26
3m1y_A		217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	97.14
2vxb_A		241	DNA repair protein RHP9; BRCT, nucleus, cell cycle	97.13
3t7k_A		256	RTT107, regulator of TY1 transposition protein 107	97.11
3l8h_A		179	Putative haloacid dehalogenase-like hydrolase; HAD	97.09
3kzx_A		231	HAD-superfamily hydrolase, subfamily IA, variant;	97.07
2pib_A		216	Phosphorylated carbohydrates phosphatase TM_1254;	97.06
2gmw_A		211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	97.0
3al2_A		235	DNA topoisomerase 2-binding protein 1; BRCT domain	96.99
2p9j_A		162	Hypothetical protein AQ2171; secsg, riken, PSI, st	96.94
3um9_A		230	Haloacid dehalogenase, type II; haloacid dehalogen	96.83
1rku_A		206	Homoserine kinase; phosphoserine phosphatase, phos	96.74
3dv9_A		247	Beta-phosphoglucomutase; structural genomics, APC6	96.55
3huf_A		325	DNA repair and telomere maintenance protein NBS1;	96.43
4eze_A		317	Haloacid dehalogenase-like hydrolase; magnesium bi	96.4
3zvl_A		416	Bifunctional polynucleotide phosphatase/kinase; hy	96.38
3nuq_A		282	Protein SSM1, putative nucleotide phosphatase; sup	96.27
4dcc_A		229	Putative haloacid dehalogenase-like hydrolase; mag	96.25
4gns_A		290	Chitin biosynthesis protein CHS5; FN3, BRCT, tetra	96.17
3iru_A		277	Phoshonoacetaldehyde hydrolase like protein; phosp	96.07
3skx_A		280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	95.96
2oda_A		196	Hypothetical protein pspto_2114; haloacid dehaloge	95.87
2o2x_A		218	Hypothetical protein; structural genomics, joint c	95.82
1nnl_A		225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	95.74
3nvb_A		387	Uncharacterized protein; protein FKBH, protein fkb	95.63
2i7d_A		193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	95.49
3p96_A		415	Phosphoserine phosphatase SERB; ssgcid, structural	95.43
3e8m_A		164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	95.36
1k1e_A		180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	95.29
2l42_A		106	DNA-binding protein RAP1; BRCT domain, protein bin	95.02
2b0c_A		206	Putative phosphatase; alpha-D-glucose-1-phosphate,	94.96
2i33_A		258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	94.69
2r8e_A		188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	94.64
3n07_A		195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	94.27
3mn1_A		189	Probable YRBI family phosphatase; structural genom	94.18
3n1u_A		191	Hydrolase, HAD superfamily, subfamily III A; struc	94.08
3ij5_A		211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	94.08
3mmz_A		176	Putative HAD family hydrolase; structural genomics	93.82
1q92_A		197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	93.12
3ocu_A		262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	93.02
3kbb_A		216	Phosphorylated carbohydrates phosphatase TM_1254;	92.91
3e58_A		214	Putative beta-phosphoglucomutase; structu genomics	92.69
3qbz_A		160	DDK kinase regulatory subunit DBF4; FHA domain,RAD	92.65
3pct_A		260	Class C acid phosphatase; hydrolase, outer membran	92.64
2nyv_A		222	Pgpase, PGP, phosphoglycolate phosphatase; structu	92.32
3l41_A		220	BRCT-containing protein 1; BRC1, BRCT domain, tand	92.07
2hsz_A		243	Novel predicted phosphatase; structural genomics,	92.04
3bwv_A		180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	91.97
3s6j_A		233	Hydrolase, haloacid dehalogenase-like family; stru	91.94
3umb_A		233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	91.85
4ex6_A		237	ALNB; modified rossman fold, phosphatase, magnesiu	91.78
2hdo_A		209	Phosphoglycolate phosphatase; NP_784602.1, structu	91.59
2obb_A		142	Hypothetical protein; structural genomics, PSI-2,	91.58
2b82_A		211	APHA, class B acid phosphatase; DDDD acid phosphat	91.28
3qnm_A		240	Haloacid dehalogenase-like hydrolase; structural g	91.09
4eek_A		259	Beta-phosphoglucomutase-related protein; hydrolase	90.89
3ed5_A		238	YFNB; APC60080, bacillus subtilis subsp. subtilis	90.84
3oq0_A		151	DBF4, protein DNA52; DDK, BRCT, RAD53, replication	90.66
2hoq_A		241	Putative HAD-hydrolase PH1655; haloacid dehalogena	90.34
1zrn_A		232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	90.29
2gfh_A		260	Haloacid dehalogenase-like hydrolase domain conta;	90.28
3kc2_A		352	Uncharacterized protein YKR070W; HAD-like, mitocho	89.88
1l6r_A		227	Hypothetical protein TA0175; structural genomics,	89.64
2hi0_A		240	Putative phosphoglycolate phosphatase; YP_619066.1	89.62
2ah5_A		210	COG0546: predicted phosphatases; MCSG, structural	89.53
1wr8_A		231	Phosphoglycolate phosphatase; alpha / beta core do	89.34
3mc1_A		226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	89.05
3u26_A		234	PF00702 domain protein; structural genomics, PSI-b	88.92
2no4_A		240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	88.37
1te2_A		226	Putative phosphatase; structural genomics, phospha	88.2
3kd3_A		219	Phosphoserine phosphohydrolase-like protein; csgid	88.04
1xpj_A		126	Hypothetical protein; structural genomics, MCSG, p	87.99
1xvi_A		275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	87.7
2hcf_A		234	Hydrolase, haloacid dehalogenase-like family; NP_6	87.61
2go7_A		207	Hydrolase, haloacid dehalogenase-like family; stru	87.43
3pgv_A		285	Haloacid dehalogenase-like hydrolase; structural g	87.37
3ddh_A		234	Putative haloacid dehalogenase-like family hydrol;	87.14
2i6x_A		211	Hydrolase, haloacid dehalogenase-like family; HAD	87.14
2w43_A		201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	87.04
1yns_A		261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	86.93
3sd7_A		240	Putative phosphatase; structural genomics, haloaci	86.2
3dnp_A		290	Stress response protein YHAX; structural PSI-2, pr	86.18
3qxg_A		243	Inorganic pyrophosphatase; hydrolase, magnesium bi	86.14
1qq5_A		253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	85.97
2zg6_A		220	Putative uncharacterized protein ST2620, probable	85.88
3oq4_A		134	DBF4, protein DNA52; DDK, BRCT, RAD53, replication	85.73
4dw8_A		279	Haloacid dehalogenase-like hydrolase; HAD, putativ	85.73
3mpo_A		279	Predicted hydrolase of the HAD superfamily; SGX, P	85.6
1nrw_A		288	Hypothetical protein, haloacid dehalogenase-like h	85.33
3umg_A		254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	84.88
3smv_A		240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	84.69
3qgm_A		268	P-nitrophenyl phosphatase (PHO2); structural genom	84.12
2pq0_A		258	Hypothetical conserved protein GK1056; hyopthetica	84.03
1nf2_A		268	Phosphatase; structural proteomics, HAD NEW fold,	83.87
3d6j_A		225	Putative haloacid dehalogenase-like hydrolase; str	83.65
3umc_A		254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	83.41
3epr_A		264	Hydrolase, haloacid dehalogenase-like family; stru	83.04
3nas_A		233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	82.94
2pke_A		251	Haloacid delahogenase-like family hydrolase; NP_63	82.92
2fi1_A		190	Hydrolase, haloacid dehalogenase-like family; stru	82.81
2fue_A		262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	82.66
3cnh_A		200	Hydrolase family protein; NP_295428.1, predicted h	82.63
3dao_A		283	Putative phosphatse; structural genomics, joint ce	82.53
2om6_A		235	Probable phosphoserine phosphatase; rossmann fold,	82.26
1vjr_A		271	4-nitrophenylphosphatase; TM1742, structural genom	82.11
2amy_A		246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	81.82
2fea_A		236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	81.57
2zos_A		249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	81.49
1rkq_A		282	Hypothetical protein YIDA; two domain structure wi	81.1
1qyi_A		384	ZR25, hypothetical protein; structural genomics, P	80.87
1s2o_A		244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	80.71
1zjj_A		263	Hypothetical protein PH1952; alpha/beta hydrolase	80.41
2qlt_A		275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	80.21
3k1z_A		263	Haloacid dehalogenase-like hydrolase domain-conta	80.19

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}	Back alignment and structure

Probab=100.00  E-value=1.1e-62  Score=552.04  Aligned_cols=318  Identities=32%  Similarity=0.525  Sum_probs=258.0

Q ss_pred             hhHHHHhhhHH--HhhhhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhcccc-CCCcceeEEec------cceE
Q 001926          662 IQKERTRRLEE--QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDR-EKPHRHLFRFP------HMGM  732 (995)
Q Consensus       662 i~ke~akrL~~--q~~LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~-~~P~~~lF~~~------~~~~  732 (995)
                      ++.+.|.++..  +++|+..+||+||||||||||||+.    +|...+|.......+. ...+...|.++      .+.|
T Consensus         5 vs~~~a~~~~~~~~~rll~~~Kl~LVLDLDeTLiHs~~----~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~   80 (442)
T 3ef1_A            5 VSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATV----DPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCY   80 (442)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEECCBTTTEEEEC----CTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEE
T ss_pred             ecHHHHHHHHHHHHHHHHhcCCeEEEEeeccceecccc----ccccchhccCCCCcchhhhccccceeeeeccCCceeEE
Confidence            34456666655  5689999999999999999999984    4544444321100000 01122346553      2579


Q ss_pred             EEeecccHHHHHHHHhccceEEEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-
Q 001926          733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-  811 (995)
Q Consensus       733 yVKLRPgL~EFLeeLSk~YEIvIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-  811 (995)
                      ||++||||++||++|+++|||+|||++.+.||++|++.|||.+.||.+|+|+|++|+.        .|+|||+++|||+ 
T Consensus        81 ~V~~RPgl~eFL~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg~--------~~~KdL~~ll~rdl  152 (442)
T 3ef1_A           81 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGS--------LAQKSLRRLFPCDT  152 (442)
T ss_dssp             EEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSSC--------SSCCCGGGTCSSCC
T ss_pred             EEEeCCCHHHHHHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCCC--------ceeeehHHhcCCCc
Confidence            9999999999999999999999999999999999999999999999999999998852        4789999888999 


Q ss_pred             CcEEEEcCCCcccccCccccccccceeeccCccc---------c-----cCC-C--CCCccc------------------
Q 001926          812 SAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRR---------Q-----FGL-L--GPSLLE------------------  856 (995)
Q Consensus       812 s~VVIVDDsp~vw~~qpdNgI~IkpY~yF~~s~~---------q-----~g~-p--~pSl~E------------------  856 (995)
                      ++||||||++.+|..|+ |+|+|++|+||.+..+         +     +++ +  .|+...                  
T Consensus       153 ~~vvIIDd~p~~~~~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (442)
T 3ef1_A          153 SMVVVIDDRGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDS  231 (442)
T ss_dssp             TTEEEEESCSGGGTTCT-TEEECCCCCCSTTCCCSCC-------------------------------------------
T ss_pred             ceEEEEECCHHHhCCCC-CEEEcCCccccCCCCcccccccccccccccccccccccccccccccccccccccccCccccc
Confidence            99999999999999997 9999999999987421         1     222 1  110000                  


Q ss_pred             -------------------------------------------------------ccccC----------ccchhhhHHH
Q 001926          857 -------------------------------------------------------IDHDE----------RSEDGTLASS  871 (995)
Q Consensus       857 -------------------------------------------------------i~~De----------dpeD~eLl~L  871 (995)
                                                                             .+.||          ..+|++|..|
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~~L~~l  311 (442)
T 3ef1_A          232 SNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERL  311 (442)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCCHHHHH
T ss_pred             ccccccccccccchhhhhccccCccchhhHHHHHHhhhhhhhhhccCchhhHHHHhhhhhhccccccccccCCcHHHHHH
Confidence                                                                   00011          1358999999


Q ss_pred             HHHHHHHHhhccccCCC--------CcchhHHHHHHHHHhhccCceeEeeecccCCCCCCCChhHHHHHHHhCCEEeccc
Q 001926          872 LGVIERLHKIFFSHQSL--------DDVDVRNILAAEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHI  943 (995)
Q Consensus       872 L~fLe~IHq~FF~~~~L--------~~~DVR~ILkeiQrkILsGCvIvFSG~~P~~~~~pe~~~LwklAe~LGAtVs~dv  943 (995)
                      +.+|.+||++||+.++.        ...||+.||.++++++|+||+|||||++|.+. ++++..+|++|+.+||+|..++
T Consensus       312 ~~~L~~iH~~fy~~~d~~~~~~~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~-~~~r~~l~~~~~~lGa~~~~~v  390 (442)
T 3ef1_A          312 EKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGV-DVLSSDIAKWAMSFGAEVVLDF  390 (442)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCCSSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTS-CSTTSHHHHHHHTTTCEECSSS
T ss_pred             HHHHHHHHHHHHHHhhhcccccccCCCCcHHHHHHHHhhcccCCcEEEEecccCCCC-CccHHHHHHHHHHcCCEEeCCC
Confidence            99999999999987532        34799999999999999999999999998754 4567899999999999999999


Q ss_pred             CCCccEEEecCCCCHHHHHHHhc-CCcEecHHHHHHHHHhccCCCCCCCCC
Q 001926          944 DDQVTHVVANSLGTDKVNWALST-GRFVVHPGWVEASALLYRRANEQDFAI  993 (995)
Q Consensus       944 d~~VTHLVAss~gTeKv~~Alk~-GI~IVSPdWLedC~~~~kRvDEsdYlL  993 (995)
                      +++||||||...+|.|+++|+++ ||+||+++||++|+..|+|+||..|+|
T Consensus       391 s~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~krldE~~YlL  441 (442)
T 3ef1_A          391 SVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL  441 (442)
T ss_dssp             SSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred             CCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence            99999999999999999999998 599999999999999999999999987

PyMOL of 3ef1

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}	Back alignment and structure

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}	Back alignment and structure

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A	Back alignment and structure

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}	Back alignment and structure

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}	Back alignment and structure

>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}	Back alignment and structure

>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*	Back alignment and structure

>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*	Back alignment and structure

>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5	Back alignment and structure

>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A	Back alignment and structure

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3	Back alignment and structure

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A	Back alignment and structure

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A	Back alignment and structure

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A	Back alignment and structure

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}	Back alignment and structure

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*	Back alignment and structure

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*	Back alignment and structure

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*	Back alignment and structure

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*	Back alignment and structure

>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}	Back alignment and structure

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*	Back alignment and structure

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B	Back alignment and structure

>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*	Back alignment and structure

>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2	Back alignment and structure

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*	Back alignment and structure

>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A	Back alignment and structure

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}	Back alignment and structure

>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A	Back alignment and structure

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}	Back alignment and structure

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3	Back alignment and structure

>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*	Back alignment and structure

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A	Back alignment and structure

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*	Back alignment and structure

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A	Back alignment and structure

>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*	Back alignment and structure

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B	Back alignment and structure

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A	Back alignment and structure

>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*	Back alignment and structure

>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}	Back alignment and structure

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A	Back alignment and structure

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*	Back alignment and structure

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}	Back alignment and structure

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*	Back alignment and structure

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}	Back alignment and structure

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0	Back alignment and structure

>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*	Back alignment and structure

>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A	Back alignment and structure

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}	Back alignment and structure

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}	Back alignment and structure

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*	Back alignment and structure

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*	Back alignment and structure

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}	Back alignment and structure

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}	Back alignment and structure

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A	Back alignment and structure

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}	Back alignment and structure

>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*	Back alignment and structure

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}	Back alignment and structure

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*	Back alignment and structure

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*	Back alignment and structure

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A	Back alignment and structure

>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}	Back alignment and structure

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0	Back alignment and structure

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*	Back alignment and structure

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}	Back alignment and structure

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19	Back alignment and structure

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A	Back alignment and structure

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*	Back alignment and structure

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}	Back alignment and structure

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*	Back alignment and structure

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*	Back alignment and structure

>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2	Back alignment and structure

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A	Back alignment and structure

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*	Back alignment and structure

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}	Back alignment and structure

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A	Back alignment and structure

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0	Back alignment and structure

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}	Back alignment and structure

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}	Back alignment and structure

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A	Back alignment and structure

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A	Back alignment and structure

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}	Back alignment and structure

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}	Back alignment and structure

>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}	Back alignment and structure

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}	Back alignment and structure

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A	Back alignment and structure

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*	Back alignment and structure

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6	Back alignment and structure

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}	Back alignment and structure

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}	Back alignment and structure

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}	Back alignment and structure

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A	Back alignment and structure

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6	Back alignment and structure

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25	Back alignment and structure

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A	Back alignment and structure

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0	Back alignment and structure

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A	Back alignment and structure

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A	Back alignment and structure

>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}	Back alignment and structure

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A	Back alignment and structure

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A	Back alignment and structure

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*	Back alignment and structure

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A	Back alignment and structure

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}	Back alignment and structure

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6	Back alignment and structure

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10	Back alignment and structure

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0	Back alignment and structure

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A	Back alignment and structure

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*	Back alignment and structure

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6	Back alignment and structure

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}	Back alignment and structure

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18	Back alignment and structure

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10	Back alignment and structure

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6	Back alignment and structure

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6	Back alignment and structure

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}	Back alignment and structure

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}	Back alignment and structure

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}	Back alignment and structure

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A	Back alignment and structure

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A	Back alignment and structure

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}	Back alignment and structure

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0	Back alignment and structure

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A	Back alignment and structure

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A	Back alignment and structure

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}	Back alignment and structure

>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A	Back alignment and structure

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0	Back alignment and structure

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10	Back alignment and structure

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}	Back alignment and structure

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}	Back alignment and structure

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0	Back alignment and structure

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A	Back alignment and structure

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10	Back alignment and structure

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}	Back alignment and structure

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}	Back alignment and structure

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A	Back alignment and structure

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}	Back alignment and structure

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}	Back alignment and structure

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3	Back alignment and structure

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*	Back alignment and structure

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}	Back alignment and structure

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}	Back alignment and structure

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*	Back alignment and structure

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A	Back alignment and structure

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20	Back alignment and structure

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A	Back alignment and structure

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10	Back alignment and structure

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13	Back alignment and structure

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*	Back alignment and structure

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}	Back alignment and structure

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		995
d1ta0a_		181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	3e-26
d1cdza_		96	c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom	1e-10
d1t15a1		109	c.15.1.3 (A:1649-1757) Breast cancer associated pr	2e-08
d1t15a2		102	c.15.1.3 (A:1758-1859) Breast cancer associated pr	2e-07
d1zx0a1		229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	0.002

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-26
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 21/169 (12%)

Query: 673 QKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFPHMGM 732
           + K   + K+C+V+DLD TL++S                K   + +             +
Sbjct: 7   EAKAQDSDKICVVIDLDETLVHS--------------SFKPVNNADFIIPVEIDGVVHQV 52

Query: 733 WTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPF 792
           +   RP +  FL+R  +LFE  L+T     YA  +A +LD  G   A             
Sbjct: 53  YVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGN 112

Query: 793 DGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFP 841
                    KDL  +      V+I+D+S   +  +  N + V  +    
Sbjct: 113 YV-------KDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM 154

PyMOL of d1ta0a_

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96	Back information, alignment and structure

>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109	Back information, alignment and structure

>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102	Back information, alignment and structure

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		995
d1ta0a_		181	Carboxy-terminal domain RNA polymerase II polypept	100.0
d1wf6a_		132	DNA topoisomerase II binding protein 1, TopBP1 {Hu	99.62
d1cdza_		96	DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta	99.6
d1t15a1		109	Breast cancer associated protein, BRCA1 {Human (Ho	99.53
d1t15a2		102	Breast cancer associated protein, BRCA1 {Human (Ho	99.52
d1l7ba_		92	NAD+-dependent DNA ligase, domain 4 {Thermus therm	99.06
d1in1a_		88	DNA ligase III alpha {Human (Homo sapiens) [TaxId:	98.98
d1kzyc1		153	53BP1 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1u7pa_		164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	98.06
d1ltqa1		149	Polynucleotide kinase, phosphatase domain {Bacteri	97.52
d2go7a1		204	Hypothetical protein SP2064 {Streptococcus pneumon	97.27
d2ah5a1		210	predicted phosphatase SP0104 {Streptococcus pneumo	97.15
d2obba1		122	Hypothetical protein BT0820 {Bacteroides thetaiota	97.11
d2feaa1		226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	96.92
d1l0ba2		97	Breast cancer associated protein, BRCA1 {Rat (Ratt	96.87
d2fpwa1		161	Histidine biosynthesis bifunctional protein HisB,	95.55
d2fi1a1		187	Putative hydrolase SP0805 {Streptococcus pneumonia	95.55
d1kzyc2		106	53BP1 {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1xpja_		124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	94.27
d1x42a1		230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	94.01
d2hsza1		224	Phosphoglycolate phosphatase Gph {Haemophilus somn	93.9
d2o2xa1		209	Hypothetical protein Mll2559 {Mesorhizobium loti [	93.82
d2amya1		243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	93.79
d2hdoa1		207	Phosphoglycolate phosphatase {Lactobacillus planta	93.62
d1te2a_		218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	93.47
d1swva_		257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	92.46
d1xvia_		232	Putative mannosyl-3-phosphoglycerate phosphatase M	92.12
d1yj5a1		195	5' polynucleotide kinase-3' phosphatase, middle do	91.62
d2gfha1		247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	90.94
d2fuea1		244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	90.63
d1wzca1		243	Putative mannosyl-3-phosphoglycerate phosphatase M	90.53
d2b0ca1		197	Putative phosphatase YihX {Escherichia coli [TaxId	90.3
d1wr8a_		230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	90.19
d1rkqa_		271	Hypothetical protein YidA {Escherichia coli [TaxId	90.19
d2c4na1		250	NagD {Escherichia coli [TaxId: 562]}	90.07
d1nrwa_		285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	88.41
d1nf2a_		267	Hypothetical protein TM0651 {Thermotoga maritima [	87.66
d1vjra_		261	Hypothetical protein TM1742 {Thermotoga maritima [	87.58
d1zs9a1		253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	87.26
d2gmwa1		182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	86.57
d1l6ra_		225	Phosphoglycolate phosphatase, PGPase {Archaeon The	86.33
d2hcfa1		228	Hypothetical protein CT1708 {Chlorobium tepidum [T	86.29
d1s2oa1		244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	85.86
d1wvia_		253	Putative phosphatase SMU.1415c {Streptococcus muta	85.78
d1u02a_		229	Trehalose-6-phosphate phosphatase related protein	84.38
d2fdra1		222	Hypothetical protein Atu0790 {Agrobacterium tumefa	83.41
d1j97a_		210	Phosphoserine phosphatase {Archaeon Methanococcus	83.04
d1rlma_		269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	82.88
d2b30a1		283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	82.66
d1yv9a1		253	Putative hydrolase EF1188 {Enterococcus faecalis [	81.83

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=302.26  Aligned_cols=169  Identities=29%  Similarity=0.374  Sum_probs=137.5

Q ss_pred             hhcCCCeEEEEeCCCceeecccCCCCCCchhhhhhhhhccccCCCcceeEEec--cceEEEeecccHHHHHHHHhccceE
Q 001926          676 MFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP--HMGMWTKLRPGIWTFLERASKLFEM  753 (995)
Q Consensus       676 LLs~kKLTLVLDLDETLVHSs~~~eldP~~~eil~~~Ee~D~~~P~~~lF~~~--~~~~yVKLRPgL~EFLeeLSk~YEI  753 (995)
                      ....+|++||||||||||||.......+            +    ....+...  ...+||++|||+++||++|+++|||
T Consensus        10 ~~~~~k~~LVLDLDeTLihs~~~~~~~~------------~----~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei   73 (181)
T d1ta0a_          10 AQDSDKICVVIDLDETLVHSSFKPVNNA------------D----FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFEC   73 (181)
T ss_dssp             GGGTTSCEEEECCBTTTEEEESSCCTTC------------S----EEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEE
T ss_pred             cccCCCeEEEEeCCCCEEccccCCCCCc------------c----ceeeecccceeeeeEEecCCCHHHHHHHHHhceEE
Confidence            3457899999999999999975221100            0    01112222  3468999999999999999999999


Q ss_pred             EEEcCCchHHHHHHHHHHcCCCceeeceEEecCCCCCCCCCCCCCCcccccccccCCC-CcEEEEcCCCcccccCccccc
Q 001926          754 HLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPKSKDLEGVLGME-SAVVIIDDSVRVWPHNKLNLI  832 (995)
Q Consensus       754 vIFTAGtkeYAd~VLdiLDP~g~lF~~RIySRddc~~~~dG~er~~yiKDLsrVLGrd-s~VVIVDDsp~vw~~qpdNgI  832 (995)
                      +|||||+++||++|++.|||++. |..++| |++|.. ..+    .++|||+ .+|++ ++||||||++.+|..|++|+|
T Consensus        74 ~I~Ta~~~~YA~~il~~ldp~~~-~~~~~~-r~~c~~-~~~----~~~KdL~-~l~~~l~~vvivDd~~~~~~~~~~N~I  145 (181)
T d1ta0a_          74 VLFTASLAKYADPVADLLDKWGA-FRARLF-RESCVF-HRG----NYVKDLS-RLGRDLRRVLILDNSPASYVFHPDNAV  145 (181)
T ss_dssp             EEECSSCHHHHHHHHHHHCSSCC-EEEEEC-GGGSEE-ETT----EEECCGG-GSCSCGGGEEEECSCGGGGTTCGGGBC
T ss_pred             EEEcCCcHHHHHHHHHHhccCCc-eeEEEE-eeeeee-cCC----cccccHh-hcCCCHHHeEEEcCChhhhhcCccCee
Confidence            99999999999999999999985 555555 777742 222    5899999 68999 999999999999999999999


Q ss_pred             cccceeeccCcccccCCCCCCcccccccCccchhhhHHHHHHHHHHHhhccccCCCCcchhHHHHHH
Q 001926          833 VVERYTYFPCSRRQFGLLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAA  899 (995)
Q Consensus       833 ~IkpY~yF~~s~~q~g~p~pSl~Ei~~DedpeD~eLl~LL~fLe~IHq~FF~~~~L~~~DVR~ILke  899 (995)
                      +|++|.+                      +++|.+|..++++|++|++         .+|||++|++
T Consensus       146 ~I~~f~~----------------------~~~D~eL~~l~~~L~~l~~---------~~DVR~~l~~  181 (181)
T d1ta0a_         146 PVASWFD----------------------NMSDTELHDLLPFFEQLSR---------VDDVYSVLRQ  181 (181)
T ss_dssp             CCCCCSS----------------------CTTCCHHHHHHHHHHHHTT---------CSCHHHHHCC
T ss_pred             EecCcCC----------------------CCCcHHHHHHHHHHHHHcc---------CCcHHHHhcC
Confidence            9999962                      4679999999999999985         7899999963

PyMOL of d1ta0a_

>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}	Back information, alignment and structure

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}	Back information, alignment and structure

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}	Back information, alignment and structure

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}	Back information, alignment and structure

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}	Back information, alignment and structure

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}	Back information, alignment and structure

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}	Back information, alignment and structure

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}	Back information, alignment and structure

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure