Citrus Sinensis ID: 001932
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 995 | 2.2.26 [Sep-21-2011] | |||||||
| P36428 | 1003 | Alanine--tRNA ligase OS=A | yes | no | 0.954 | 0.947 | 0.799 | 0.0 | |
| Q5A8K2 | 969 | Alanine--tRNA ligase OS=C | N/A | no | 0.953 | 0.979 | 0.485 | 0.0 | |
| P40825 | 983 | Alanine--tRNA ligase, mit | yes | no | 0.874 | 0.885 | 0.515 | 0.0 | |
| Q54Y20 | 946 | Alanine--tRNA ligase, cyt | yes | no | 0.928 | 0.976 | 0.5 | 0.0 | |
| P50475 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.926 | 0.952 | 0.486 | 0.0 | |
| Q5RC02 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.927 | 0.953 | 0.484 | 0.0 | |
| Q8CFX8 | 968 | Alanine--tRNA ligase, cyt | N/A | no | 0.926 | 0.952 | 0.486 | 0.0 | |
| Q8BGQ7 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.926 | 0.952 | 0.486 | 0.0 | |
| P49588 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.927 | 0.953 | 0.484 | 0.0 | |
| O13914 | 959 | Alanine--tRNA ligase OS=S | yes | no | 0.937 | 0.972 | 0.485 | 0.0 |
| >sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 | Back alignment and function desciption |
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Score = 1554 bits (4023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 765/957 (79%), Positives = 851/957 (88%), Gaps = 7/957 (0%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
VA MPG++P +WPA +VRDT+ FF K H W SSPVVP NDPTLLFANAGMNQYKP
Sbjct: 46 VAVMPGSEPSETQWPAKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKP 105
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 106 IFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 165
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RVLPFGCK
Sbjct: 166 KEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVLPFGCK 225
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRESDGSLKP
Sbjct: 226 DNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKP 285
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +D D+VD
Sbjct: 286 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVD 345
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFFNGLV+
Sbjct: 346 MAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSS 405
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
V++VMGDVF ELK+ E I +II EEASF KTL KGIEKF+KA Q VQG LSG DAFI
Sbjct: 406 VIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLSGDDAFI 465
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMDADAT+
Sbjct: 466 LWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATST 525
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES + VG+VL S+SFYAEQGGQ
Sbjct: 526 LHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQ 585
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVIC-------KLIAPN 637
IFD G IEG FG+F V NVQI+GGFV+HIG L++ G SVG++VIC KLIAPN
Sbjct: 586 IFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPN 645
Query: 638 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 697
HTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK E
Sbjct: 646 HTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDE 705
Query: 698 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 757
LDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW +S+E C
Sbjct: 706 LDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFC 765
Query: 758 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 817
GGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT A+ A AA LE+EV+DAS+ EGS
Sbjct: 766 GGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASRAEGS 825
Query: 818 LLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 877
LEK V++LKS+VD A IPA KKADIR KIA LQN+VRKAQKK+AE+NL+K+VK+ATE A
Sbjct: 826 ALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLATEAA 885
Query: 878 EAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEK 937
E+AAS+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAVVCAGVPEK
Sbjct: 886 ESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEK 945
Query: 938 SDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 994
SDQ K L+V+EWLT AL PLKGRCGKGKGGLASGQGTDA+QV A+D+A+ FA+MKL
Sbjct: 946 SDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFASMKL 1002
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 | Back alignment and function description |
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| >sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 | Back alignment and function description |
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| >sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 | Back alignment and function description |
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| >sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 | Back alignment and function description |
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| >sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 995 | ||||||
| 255580622 | 1025 | alanyl-tRNA synthetase, putative [Ricinu | 0.955 | 0.927 | 0.836 | 0.0 | |
| 225423779 | 1002 | PREDICTED: alanyl-tRNA synthetase-like [ | 0.965 | 0.959 | 0.833 | 0.0 | |
| 449461691 | 956 | PREDICTED: alanine--tRNA ligase-like [Cu | 0.951 | 0.990 | 0.824 | 0.0 | |
| 449508396 | 956 | PREDICTED: LOW QUALITY PROTEIN: alanine- | 0.951 | 0.990 | 0.822 | 0.0 | |
| 297737260 | 960 | unnamed protein product [Vitis vinifera] | 0.951 | 0.986 | 0.828 | 0.0 | |
| 30694735 | 1003 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.954 | 0.947 | 0.799 | 0.0 | |
| 297852712 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.951 | 0.991 | 0.801 | 0.0 | |
| 5734779 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.951 | 0.991 | 0.799 | 0.0 | |
| 1673365 | 1003 | mitochondrial tRNA-Ala synthetase [Arabi | 0.954 | 0.947 | 0.796 | 0.0 | |
| 421855 | 989 | alanine-tRNA ligase (EC 6.1.1.7) - Arabi | 0.954 | 0.960 | 0.796 | 0.0 |
| >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1681 bits (4354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/958 (83%), Positives = 868/958 (90%), Gaps = 7/958 (0%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
+AAMPG DPQ +EWPA KVRDTF FFEDK HV+WKSSPVVPVNDPTLLFANAGMNQ+KP
Sbjct: 68 IAAMPGVDPQEMEWPAKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKP 127
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 128 IFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 187
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAI WAWELLTK+Y+LPADR+YATYFGGDEKAGLAPD EARD WL+FLP RVLPFGCK
Sbjct: 188 REAIGWAWELLTKIYKLPADRIYATYFGGDEKAGLAPDAEARDFWLQFLPPERVLPFGCK 247
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDA+ LVNNDDPTCIEIWN+VFIQFNRESDGSLKP
Sbjct: 248 DNFWEMGDTGPCGPCTEIHYDRVGNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKP 307
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVF+PIFDAIQQATGARPYSGKVG+DD D+VD
Sbjct: 308 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVD 367
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ+GFFNGLVNI
Sbjct: 368 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNI 427
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
VVKVMGDVFPEL Q E IREII EEASFGKTLLKGIEKFKKAAQ+VQGKV QDAF+
Sbjct: 428 VVKVMGDVFPELIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSCLQDAFV 487
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGL VD+EGFNNAMDEARERSR+AQNKQAGG I+MDADAT+A
Sbjct: 488 LWDTYGFPLDLTQLMAEERGLWVDVEGFNNAMDEARERSRNAQNKQAGGDIIMDADATSA 547
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK+GV TDDS+KFIWFQDH+SVIKAIYTG+EF+ S NEVGIVL S+SFYAEQGGQ
Sbjct: 548 LHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSFYAEQGGQ 607
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAPN 637
IFD G +EG FGSF V NVQI+GGFV+HIGSLT A R SVG++VICK LIAPN
Sbjct: 608 IFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDRRTLIAPN 667
Query: 638 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 697
HTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPVDP LR+IESIVNEQIKAE
Sbjct: 668 HTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIVNEQIKAE 727
Query: 698 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 757
L+V +KEATL+EAK INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW SISAELC
Sbjct: 728 LEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWSSISAELC 787
Query: 758 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 817
GGTH+SNT+EA+AFALLSEEGIAKG+RRITAVTT A+KA E A LE+E D+ SK EGS
Sbjct: 788 GGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEADEISKTEGS 847
Query: 818 LLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETA 877
LLEK VASLKS+VD A IPA KK DIR KI+ LQ++VRKAQKK++EEN+QKAVK+ATE A
Sbjct: 848 LLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKAVKIATEMA 907
Query: 878 EAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEK 937
E AAS GK FCISRV+VGLDAAAVREAV KV+++KG+ MVFS DETTNK VVCAGV EK
Sbjct: 908 EVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVVVCAGVAEK 967
Query: 938 SDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR 995
D+SKQLEVSEWLTAAL+PL GRCGKGKGGLA+GQGT+ + AM+LAAEFA MKLR
Sbjct: 968 GDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEFAQMKLR 1025
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|421855|pir||S32671 alanine-tRNA ligase (EC 6.1.1.7) - Arabidopsis thaliana (fragment) | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 995 | ||||||
| TAIR|locus:2011962 | 1003 | ALATS "Alanyl-tRNA synthetase" | 0.982 | 0.975 | 0.749 | 0.0 | |
| UNIPROTKB|A6QLT9 | 968 | AARS "AARS protein" [Bos tauru | 0.565 | 0.581 | 0.554 | 5.5e-237 | |
| RGD|1304832 | 968 | Aars "alanyl-tRNA synthetase" | 0.566 | 0.582 | 0.551 | 7.1e-237 | |
| UNIPROTKB|F1P5J5 | 916 | AARS "Uncharacterized protein" | 0.566 | 0.615 | 0.561 | 1.9e-236 | |
| MGI|MGI:2384560 | 968 | Aars "alanyl-tRNA synthetase" | 0.566 | 0.582 | 0.558 | 1.9e-236 | |
| UNIPROTKB|P49588 | 968 | AARS "Alanine--tRNA ligase, cy | 0.566 | 0.582 | 0.550 | 3.1e-236 | |
| UNIPROTKB|F1P7C2 | 968 | AARS "Uncharacterized protein" | 0.566 | 0.582 | 0.548 | 4e-234 | |
| DICTYBASE|DDB_G0277823 | 946 | alaS "alanine-tRNA ligase" [Di | 0.895 | 0.941 | 0.506 | 1.7e-233 | |
| UNIPROTKB|J9P755 | 952 | AARS "Uncharacterized protein" | 0.566 | 0.592 | 0.548 | 3.6e-233 | |
| SGD|S000005862 | 983 | ALA1 "Cytoplasmic and mitochon | 0.876 | 0.887 | 0.503 | 1.1e-231 |
| TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3860 (1363.8 bits), Expect = 0., P = 0.
Identities = 738/985 (74%), Positives = 826/985 (83%)
Query: 17 ARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76
+RV + L +H S ++S+VA MPG++P +WPA +VRDT+ FF K H
Sbjct: 18 SRVFYSSHLRRPFFSHFRFSSSSSTSSSVAVMPGSEPSETQWPAKRVRDTYVDFFRGKGH 77
Query: 77 VNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
W SSPVVP NDPTLLFANAGMNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHN
Sbjct: 78 KFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHN 137
Query: 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEK 196
DLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEK
Sbjct: 138 DLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEK 197
Query: 197 AGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 256
AGL PDNEARDIWLK LP+ RVLPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLV
Sbjct: 198 AGLQPDNEARDIWLKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLV 257
Query: 257 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316
NNDDPTC+EIWN+VFIQFNRESDGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFM
Sbjct: 258 NNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFM 317
Query: 317 PIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376
PIFD IQ+ATGARPYSGKVG +D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVL
Sbjct: 318 PIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVL 377
Query: 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGK 436
RRILRRAVRYG E+LKA++GFFNGLV+ V++VMGDVF ELK+ SF K
Sbjct: 378 RRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCK 437
Query: 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 496
TL KGIEKF+KA Q VQG LSG DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM
Sbjct: 438 TLAKGIEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAM 497
Query: 497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 556
+EARERSRSAQNKQAGGAIVMDADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS
Sbjct: 498 EEARERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGS 557
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
F+ES + VG+VL S+SFYAEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L
Sbjct: 558 TFLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYL 617
Query: 617 TEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 669
++ G SVG++VICK LIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLR
Sbjct: 618 SKETGEVSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677
Query: 670 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVR 729
FDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVR
Sbjct: 678 FDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVR 737
Query: 730 VVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 789
VV+IGRKVEDLLADPEN EW +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAV
Sbjct: 738 VVSIGRKVEDLLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAV 797
Query: 790 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIAL 849
TT A+ A AA LE+EV+DAS+ EGS LEK V++LKS+VD A IPA KKADIR KIA
Sbjct: 798 TTECAFDALNAASLLEREVEDASRAEGSALEKKVSALKSRVDAAIIPAAKKADIRTKIAS 857
Query: 850 LQNQVRKAQKKVAEENLQXXXXXXXXXXXXXXSNGKPFCISRVEVGLDAAAVREAVLKVI 909
LQN+VRKAQKK+AE+NL+ S+GK FCI +++VGLDAAAVREAV KV+
Sbjct: 858 LQNEVRKAQKKIAEQNLKKSVKLATEAAESAASDGKTFCIIQLDVGLDAAAVREAVSKVM 917
Query: 910 EQKGMPVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLXXXXXXXXXXXX 969
E+KGM +MVFSTDE+TNKAVVCAGVPEKSDQ K L+V+EWLT AL PL
Sbjct: 918 EKKGMSIMVFSTDESTNKAVVCAGVPEKSDQFKPLDVTEWLTTALGPLKGRCGKGKGGLA 977
Query: 970 XXXXTDAAQVTPAMDLAAEFAAMKL 994
TDA+QV A+D+A+ FA+MKL
Sbjct: 978 SGQGTDASQVQAALDMASSFASMKL 1002
|
|
| UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P7C2 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9P755 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7UBU3 | SYA_SHIFL | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| P36428 | SYA_ARATH | 6, ., 1, ., 1, ., 7 | 0.7993 | 0.9547 | 0.9471 | yes | no |
| A8ANQ1 | SYA_CITK8 | 6, ., 1, ., 1, ., 7 | 0.3832 | 0.8341 | 0.9485 | yes | no |
| O13914 | SYA_SCHPO | 6, ., 1, ., 1, ., 7 | 0.4855 | 0.9376 | 0.9728 | yes | no |
| A7ZQC5 | SYA_ECO24 | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| O01541 | SYAC_CAEEL | 6, ., 1, ., 1, ., 7 | 0.4779 | 0.9185 | 0.9442 | yes | no |
| A6VA71 | SYA_PSEA7 | 6, ., 1, ., 1, ., 7 | 0.3993 | 0.8522 | 0.9702 | yes | no |
| Q02I63 | SYA_PSEAB | 6, ., 1, ., 1, ., 7 | 0.3975 | 0.8502 | 0.9679 | yes | no |
| Q5RC02 | SYAC_PONAB | 6, ., 1, ., 1, ., 7 | 0.4840 | 0.9276 | 0.9535 | yes | no |
| Q8BGQ7 | SYAC_MOUSE | 6, ., 1, ., 1, ., 7 | 0.4865 | 0.9266 | 0.9524 | yes | no |
| A4XWE2 | SYA_PSEMY | 6, ., 1, ., 1, ., 7 | 0.3947 | 0.8512 | 0.9691 | yes | no |
| A1BD33 | SYA_CHLPD | 6, ., 1, ., 1, ., 7 | 0.4050 | 0.8492 | 0.9515 | yes | no |
| Q7MHR6 | SYA_VIBVY | 6, ., 1, ., 1, ., 7 | 0.3919 | 0.8251 | 0.9546 | yes | no |
| Q9VLM8 | SYAC_DROME | 6, ., 1, ., 1, ., 7 | 0.4543 | 0.9246 | 0.9523 | yes | no |
| Q54Y20 | SYAC_DICDI | 6, ., 1, ., 1, ., 7 | 0.5 | 0.9286 | 0.9767 | yes | no |
| P40825 | SYA_YEAST | 6, ., 1, ., 1, ., 7 | 0.5155 | 0.8743 | 0.8850 | yes | no |
| P50475 | SYAC_RAT | 6, ., 1, ., 1, ., 7 | 0.4865 | 0.9266 | 0.9524 | yes | no |
| B1XCM5 | SYA_ECODH | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| Q15RG5 | SYA_PSEA6 | 6, ., 1, ., 1, ., 7 | 0.3738 | 0.8412 | 0.9676 | yes | no |
| A4VJB3 | SYA_PSEU5 | 6, ., 1, ., 1, ., 7 | 0.3924 | 0.8532 | 0.9713 | yes | no |
| Q1R804 | SYA_ECOUT | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| Q0TEI3 | SYA_ECOL5 | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| B1IUY2 | SYA_ECOLC | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| A7MYT5 | SYA_VIBHB | 6, ., 1, ., 1, ., 7 | 0.3905 | 0.8241 | 0.9479 | yes | no |
| Q87LR3 | SYA_VIBPA | 6, ., 1, ., 1, ., 7 | 0.3957 | 0.8241 | 0.9534 | yes | no |
| Q3YYG6 | SYA_SHISS | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| Q9I553 | SYA_PSEAE | 6, ., 1, ., 1, ., 7 | 0.3985 | 0.8502 | 0.9679 | yes | no |
| A1AEN7 | SYA_ECOK1 | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| Q0T1C3 | SYA_SHIF8 | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| A8A3H4 | SYA_ECOHS | 6, ., 1, ., 1, ., 7 | 0.3820 | 0.8311 | 0.9440 | yes | no |
| Q5AQL1 | SYA_EMENI | 6, ., 1, ., 1, ., 7 | 0.4806 | 0.9286 | 0.9614 | yes | no |
| P49588 | SYAC_HUMAN | 6, ., 1, ., 1, ., 7 | 0.4840 | 0.9276 | 0.9535 | yes | no |
| A8GA09 | SYA_SERP5 | 6, ., 1, ., 1, ., 7 | 0.3734 | 0.8502 | 0.9668 | yes | no |
| Q6LMU3 | SYA_PHOPR | 6, ., 1, ., 1, ., 7 | 0.3916 | 0.8492 | 0.9679 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.979 |
| 3rd Layer | 6.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
|||
 | GSVIVG00013953001 | SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (963 aa) | |||||||||
(Vitis vinifera) | |||||||||||
 | GSVIVG00022843001 | • | • | 0.866 | |||||||
 | GSVIVG00006883001 | • | • | 0.851 | |||||||
 | GSVIVG00001918001 | • | • | 0.815 | |||||||
 | GSVIVG00016648001 | • | • | 0.803 | |||||||
 | GSVIVG00036298001 | • | • | 0.779 | |||||||
 | GSVIVG00017986001 | • | 0.749 | ||||||||
 | GSVIVG00038605001 | • | • | • | • | 0.709 | |||||
 | GSVIVG00020546001 | • | • | 0.704 | |||||||
 | rpoC2 | • | 0.702 | ||||||||
 | GSVIVG00023243001 | • | • | • | 0.698 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 995 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-132 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-118 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 5e-86 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 1e-81 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-33 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 1e-22 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 8e-13 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 1e-12 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 1e-06 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 3e-05 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 2e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1621 bits (4200), Expect = 0.0
Identities = 629/957 (65%), Positives = 723/957 (75%), Gaps = 33/957 (3%)
Query: 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
MP D EWP ++R TF FFE K H SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60
Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61 GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120
Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
I WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178
Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238
Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298
Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
RVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358
Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
+ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI + A+AT+
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538
Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAP 636
I D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CK IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596
Query: 637 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 696
NHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +ES+VNE I
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656
Query: 697 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 756
L V +KE LA+AK INGLRAVFGE YPDPVRVV++G S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701
Query: 757 CGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG 816
CGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E+D A K+EG
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 817 SLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 876
S LEK VASLKS+VD A IPA KK +IRA+++ LQ ++R AQK+ A + AV ATE
Sbjct: 762 SDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATEL 821
Query: 877 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTNKAVVCAGVP 935
A A S GK ++R++VG+DAAA++EA KVI + +V S+DE K + A VP
Sbjct: 822 ASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVP 881
Query: 936 EKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 992
+ K L+ +WL A+ L G G GK G A GQG DA ++ A++ A FA
Sbjct: 882 PGVVK-KGLKAGKWL-GAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAVA 936
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 995 | |||
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 100.0 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.93 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.92 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.91 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.9 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.89 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.83 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.73 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.33 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 99.0 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 98.82 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 98.81 | |
| PF02272 | 68 | DHHA1: DHHA1 domain; InterPro: IPR003156 This doma | 97.74 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 96.01 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 95.24 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 93.78 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 92.27 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 91.75 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 91.61 | |
| TIGR00644 | 539 | recJ single-stranded-DNA-specific exonuclease RecJ | 88.62 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 88.54 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 83.9 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 83.6 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 83.06 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 82.33 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 81.43 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 80.77 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 80.55 |
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-245 Score=2218.91 Aligned_cols=922 Identities=68% Similarity=1.065 Sum_probs=844.1
Q ss_pred ccCCCCcCCCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCccccccccccccc
Q 001932 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (995)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~Qk 127 (995)
||-.++..++||++|||++||+||++|||+++|||||||+|||||||||||||||||||+|.++|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999777788999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 001932 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (995)
Q Consensus 128 CiR~gGkhnDl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~ 207 (995)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+.+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCC
Q 001932 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (995)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (995)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766688899999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhhheeeecCCCcc
Q 001932 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (995)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG~~P 367 (995)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..+.||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889886543332456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001932 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (995)
Q Consensus 368 sn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~ 447 (995)
||+|||||||||||||+|+|+++||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChHHHHHhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHH
Q 001932 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (995)
Q Consensus 448 ~~~~~~---~~~l~g~~~f~Lydt~G~p~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 524 (995)
.+++++ ++.|||++||+||||||||+|||++||+|+|+.||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876532221111222222334
Q ss_pred HhhcCCCCcccccccccceeeeEEEEEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccc-eEEEEeE
Q 001932 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (995)
Q Consensus 525 l~~~~~~~t~~~~~y~y~~~~~a~Vl~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~dv 603 (995)
+....++++++|.||++..+++|+|++++.+++.|+++.+++.++|+||+|+|||||||||+|+|+|..+++ .++|++|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 433223444469999954338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEeCCEEEEEEeeccCCCcCCCCCeEehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCC
Q 001932 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 676 (995)
Q Consensus 604 ~~~~g~ivH~~~~~~~~~~l~~G~~V~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~ 676 (995)
++.+|.++|.+.+.. +.+.+|++|.+. +||++|||+|||++|++++||.++.|.||+++++++||||++++
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987654 678999999998 99999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHccCCeEEEEcCHHHHhcccCchhhcCccCCCCEEEEEeCCcccccccCCCCccccce-eee
Q 001932 677 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 755 (995)
Q Consensus 677 ~lt~eeL~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~~~~f~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~-d~e 755 (995)
++|++++.+||++||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997799999999999999999998 66 999
Q ss_pred eccCCCcccccccccEEEEeeeeccCCeeEEEEEechHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHhhhcCCCcc
Q 001932 756 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAI 835 (995)
Q Consensus 756 ~CgGTHV~nTgeIg~fkI~~~~~~~~G~~RI~~vtG~~A~~~~~~~~~~~~~l~~~~~~~~~~i~k~l~~~~~~~~~~~~ 835 (995)
+||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+++++++.+++++...+.+.+..|.+.+...++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998778888899999999988889
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccEEEEEeccCCCHHHHHHHHHHHHhcc-CC
Q 001932 836 PAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GM 914 (995)
Q Consensus 836 ~~~~~~~l~~~l~~l~~e~k~l~kel~~l~~~~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~L~~~a~~l~~~~-~~ 914 (995)
|+.++.++.++++++++++++++|++++++.+++...++.+.+++...+..+++..++.+.+++.|+++++.++++. ..
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~ 860 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDP 860 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999888888765543333677777754578999999999998854 43
Q ss_pred cEEEEEeeCCCCeEEEEEecCCCcccccCCCHHHHHHHHhhccCCCCCCCCCCCcccccCCcCCHHHHHHHHHHHHH
Q 001932 915 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 991 (995)
Q Consensus 915 ~v~ll~~~~~~~k~~~~~~v~~~~~~~~~~~A~~l~k~v~~~lgGkGG~Gk~~~AQG~g~~~~~l~~al~~a~~~~~ 991 (995)
.+++++....++++.+++++++++ ..++++|++|++++++.+||||| |+|+||||+|++++++++|++.++++++
T Consensus 861 ~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 861 AAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred eEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 566665432457888888888876 66679999999999999999999 9999999999999999999999999875
|
|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 995 | ||||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-110 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-110 | ||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-109 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 2e-99 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 8e-39 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 9e-29 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 9e-24 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 5e-04 |
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
|
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 162/773 (20%), Positives = 277/773 (35%), Gaps = 146/773 (18%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
+R+ + FFE + H + PVV + A + ++P G A P
Sbjct: 65 MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
+Q CIR +DLD VG+ H T FEM+ + +F Y+KNE + + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
++ + + + K+ W G G
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197
Query: 237 GPCSEIHYDRTG---------NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
GPC E + ++ N +
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257
Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
V + E + +I+ N N + + I + G
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317
Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
+ +ADH R + F + DG P N G Y+ R ++RR++R
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377
Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
E L+ LV + K++G F + ++EI+ E+ + T+ KG ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432
Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
+ K L D L+D++G P++L +A E+G V++ + + ++
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490
Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
Q K + + AT + +++ D T EF V+
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525
Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
++L S+FY E GGQ D G++ G F V +V G V+H+ + VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581
Query: 627 EEVICKL-------IAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 679
+V + +H+ TH+L ++L++VLG+HV Q G+ K R D +H +
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641
Query: 680 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 737
E ++ IE + N +I A + + EA+ G ++ G +RVV +G
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697
Query: 738 EDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 790
+ CGGTH +T E +L E I G+ R
Sbjct: 698 --------------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 995 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.95 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.95 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.94 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.93 | |
| 2zvf_A | 171 | Alanyl-tRNA synthetase; C-terminal, oligomerizatio | 99.82 | |
| 3g98_A | 111 | Alanyl-tRNA synthetase; alpha and beta fold, amino | 99.6 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 94.26 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 91.93 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 82.57 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-191 Score=1705.73 Aligned_cols=629 Identities=27% Similarity=0.443 Sum_probs=570.9
Q ss_pred CcCCCCChHHHHHHHHHhhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccc
Q 001932 53 PQVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKC 128 (995)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~s~slvp~~d~tllftnAGm~~fk~~f~-G~~~p~~~~~~~~r~~~~QkC 128 (995)
+..++||++|||++||+||++|| |++||||||||+|||||||||||||||||||+ |.++|+ ++|+||||||
T Consensus 52 ~~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkC 126 (752)
T 2zze_A 52 GIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPS 126 (752)
T ss_dssp SSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEE
T ss_pred cccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccc
Confidence 34578999999999999999999 99999999999999999999999999999997 999986 4899999999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcH
Q 001932 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDN 203 (995)
Q Consensus 129 iR~gGkhnDl~~VG~t~rH~TfFEMlGn~Sfg-----dYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~ 203 (995)
||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 127 iR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~------------- 187 (752)
T 2zze_A 127 IRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F------------- 187 (752)
T ss_dssp ECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E-------------
T ss_pred eec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e-------------
Confidence 996 7999999999999999999999999 999999999999999999999999993 2
Q ss_pred HHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeecccc---------
Q 001932 204 EARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF--------- 274 (995)
Q Consensus 204 E~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~--------- 274 (995)
+||||+|| |||||||||||| | |||||||||||
T Consensus 188 --------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~ 228 (752)
T 2zze_A 188 --------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQ 228 (752)
T ss_dssp --------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCS
T ss_pred --------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeeccccccccc
Confidence 69999999 999999999997 1 99999999999
Q ss_pred ----ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCc
Q 001932 275 ----NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADD 339 (995)
Q Consensus 275 ----~~~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtDlf~pli~~i~~~~~~~-----------~y~g~~~~~~ 339 (995)
|| ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++
T Consensus 229 ~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~ 306 (752)
T 2zze_A 229 DQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIED 306 (752)
T ss_dssp CCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSS
T ss_pred cchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccc
Confidence 88 69999999999999999999999999999999999 9999999999999985 2345444222
Q ss_pred cccc------------------------cchhhhhhhhhhhheeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhCCCc
Q 001932 340 ADKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQD 395 (995)
Q Consensus 340 ~~~~------------------------~~~~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~~~~~~~l~~~~ 395 (995)
.+.+ +.++||||||+||++|||+||++|||+|||||||||||||+|+|+ +||++.
T Consensus 307 ~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg~~~ 385 (752)
T 2zze_A 307 LGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELGLEV 385 (752)
T ss_dssp SSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTTCCC
T ss_pred hhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhCCCc
Confidence 1111 468899999999999999999999999999999999999999995 799999
Q ss_pred chhhhHHHHHHHHhcccChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChHHHHHhhccCCCC
Q 001932 396 GFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFP 472 (995)
Q Consensus 396 ~~l~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~~~~~~~~~~---~~~l~g~~~f~Lydt~G~p 472 (995)
| |++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++++ +++|||++||+||||||||
T Consensus 386 ~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP 464 (752)
T 2zze_A 386 P-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLT 464 (752)
T ss_dssp C-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCC
T ss_pred c-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCC
Confidence 9 99999999999999999999999999999999999999999999999999998874 3579999999999999999
Q ss_pred hHHHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccccc--cceeeeEEE
Q 001932 473 LDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVI 549 (995)
Q Consensus 473 ~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~y~--y~~~~~a~V 549 (995)
+|||++||+|+|++||++ +|+++|++||+++|++.. ... .+ ...+. ..|+|+ +.+|+ |..+++|+|
T Consensus 465 ~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~~--~~~~T~-~l~Y~~~yl~~~~a~V 533 (752)
T 2zze_A 465 PEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELLK--DLPDTR-RLYYEDPFMXEFDAXV 533 (752)
T ss_dssp HHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSSS--SSCCCE-EHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHhc--cCCCce-eecccCCccceEEEEE
Confidence 999999999999999999 899999999998875421 100 00 00111 346775 77787 458999999
Q ss_pred EEEEeCCeeeeeecCCCeEEEEecceEEEEeeCCeeeccceeecccceEEEEeEEEeCCEEEEEEeeccCCCcCCCCCeE
Q 001932 550 KAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEV 629 (995)
Q Consensus 550 l~i~~~~~~v~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~ivH~~~~~~~~~~l~~G~~V 629 (995)
+++.. .+|+||+|+|||||||||+|+|+|..++..++|+||++.+|.++|.+.. . +.+++|++|
T Consensus 534 l~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V 597 (752)
T 2zze_A 534 LRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIV 597 (752)
T ss_dssp EEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEE
T ss_pred EEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeE
Confidence 99974 3699999999999999999999998766789999999999999999874 3 678999999
Q ss_pred ehh-------hHhhhchHHHHHHHHHHHHhCCccccccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHccCCeEE
Q 001932 630 ICK-------LIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFS 702 (995)
Q Consensus 630 ~~~-------~~m~~HTAtHLL~aAlr~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eeL~~IE~~~NeiI~~nlpV~~ 702 (995)
.+. .+|++|||+|||++||+++||.+++|.|+++.++++||||+++.++|++++++||++||++|++|+||++
T Consensus 598 ~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~ 677 (752)
T 2zze_A 598 HGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTW 677 (752)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEE
T ss_pred EEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccce
Confidence 999 8999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred EEcCHHHHhcccCchhhc--CccCCCCEEEEEeCCcccccccCCCCccccceeeeeccCCCcccccccccEEEEeeeecc
Q 001932 703 KEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIA 780 (995)
Q Consensus 703 ~~~~~eEA~~~~g~~~~f--~e~y~d~VRvV~I~~~~~~ll~~~~~~~~~~~d~e~CgGTHV~nTgeIg~fkI~~~~~~~ 780 (995)
.+++++||+++.++ ++| +++|++.||||+|+ ++|.++||||||+|||+||.|+|+++++++
T Consensus 678 ~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~ 740 (752)
T 2zze_A 678 EWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQ 740 (752)
T ss_dssp EEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEE
T ss_pred eecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEc
Confidence 99999999997544 455 66788999999999 689999999999999999999999999999
Q ss_pred CCeeEEEEEech
Q 001932 781 KGIRRITAVTTG 792 (995)
Q Consensus 781 ~G~~RI~~vtG~ 792 (995)
+|++||+|+||.
T Consensus 741 ~GvrRIeavtG~ 752 (752)
T 2zze_A 741 DGVERIIFACGE 752 (752)
T ss_dssp TTEEEEEEEECC
T ss_pred CCEEEEEEEeCC
Confidence 999999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 995 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 6e-91 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 9e-46 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 1e-23 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 3e-23 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 3e-13 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 4e-12 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 1e-11 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 287 bits (735), Expect = 6e-91
Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + D EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNY 310
R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 995 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.96 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.94 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.94 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.83 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.41 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 91.53 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.1e-110 Score=873.48 Aligned_cols=234 Identities=53% Similarity=1.011 Sum_probs=225.7
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 001932 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (995)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (995)
.||++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|++|||||+|||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~n 75 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHN 75 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccc
Confidence 489999999999999999999999999999999999999999999999999999986 489999999999999999
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CC
Q 001932 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (995)
Q Consensus 137 Dl~~VG~t~rH~TfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~rL~vT~~~~~~~~~~~~D~E~~~iW~~~--~~ 214 (995)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++ |+||+++|.+. +|
T Consensus 76 Dld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~ 147 (236)
T d1riqa2 76 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIP 147 (236)
T ss_dssp CTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCC
T ss_pred hhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecC--------cHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999999984 89999999987 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeeEeecCCCCCCCCCCCCCCCCeeEEeeeeccccccCCCCccccCCCCccccCc
Q 001932 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (995)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGPcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~~~~~g~l~~Lp~~~IDTGm 294 (995)
++||++++.+||||+||++||||||||||||+++. .++++|||||||+|||||+|+++|++.|||+|+|||||
T Consensus 148 ~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~-------~~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGm 220 (236)
T d1riqa2 148 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM 220 (236)
T ss_dssp GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTT-------SCHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cccceecCCCCCccccCCCCCCCcceeEEEccccc-------cCCCCceeeeeeeeheeeeecCCCccccCCCCcccCCc
Confidence 99999999999999999999999999999998653 24568999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCc
Q 001932 295 GFERLTSILQNKMSNY 310 (995)
Q Consensus 295 GlERl~~vlqg~~sny 310 (995)
|||||+|||||++|||
T Consensus 221 GLERi~~vlqg~~s~y 236 (236)
T d1riqa2 221 GLERIASVLQGKNSNF 236 (236)
T ss_dssp EHHHHHHHHTTCSSGG
T ss_pred cHHHHHHHHcCCCCCC
Confidence 9999999999999998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|