Citrus Sinensis ID: 001938

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990---

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

ccccccccccccccEEEEEEEEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccEEEEcccEEEEEEEEEEcccccccccccccccEEEEEEcccccccccEEEEEEccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEEEccccccccEEEEEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccHHHcccccccccccccccHHHHHHHHccccccHHHHHHHccccccHHHHcccccc

cEEEEEEcccccccEEEEEEEEEEEccccccccccHcHHHEEEEEcccccccccccEEcccccccccccEEEEEccEEEEEEEEEccccccccccHHHHHHEEEEccccHHHHHHHccEEEEEHHHHcEEEEcEEEccccccccccccccccEEEEEEEEccccccccccccHHHcccccccccccccEHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEccccccccccccccccccccEEEEccccccHccccccEEEEcccccccccEEccccccccccccccccccccccccccccEEEcccccccccccccHcccccccccccHHHHHHccccccccccccccccccccccEccccccccccccccccccccccccccccccccEcccccccccccccccHEEcccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHEEEHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEcHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHccccccccHHccccccccccccccccHHHHHHHHHHHHcccHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccc

mvlglsaknrkeasiHVDYQihiqdikpwppsqslRSLRSVMIQWqngdrnsgstktvgpslgsvigegkiefNESFRLRVTLLRDMNVKNKDADTFLKNClefnlyeprrdkTQLLATATIDladygivketlsvnapmnskrsfrntaqpvlfikiqpaeksvsrtssslregfsreasldknggeSVSALMNEEYaeeaesasftdddvssrssptvsstvemnngfpqneeirsvtlsdsaegfkKEQAlaskshpdksnikaqisphehlkggssrsssidlsseleghvnchapvsnspnsspfiSKKVIAHAVQssssfisnengkeedspclrgndheNLAEVQrklptgkpaisvnaEQNCEEVASNNFSAKLAslnekhpliqeigssnssdsqvngendangktwrmgkvsmeegaylDDYCNDFVKYRMEQEDNGLEREIFEkgrhsagdeplnfcsrnatrnqvslgsdspspiredpvnfgtkrnllksdrlknvrsvrsssdiarsngnqkeakengvlgdapnragsfgsperkdykvyprdtrsAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEhgssmskvhapARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAcgndvprltfWLSNSIVLRAIISQAtgrleqpfaagqslernssqrgnnnitsplkwkesasrkkdnrnvmrgsfddwedphtlpSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERvmdrdigscsrknlertsssgdqeqINFSLDHWKKAFKDACERLcpvrarghecgclPLLARLIMEQCVARLDVAMFNAILREsadeiptdpvsdpisdskvlpipagkssfgaGAQLKNAIGNWSRWLSdlfgmddddsldnenehdadderqdssfkSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

mvlglsaknrkeaSIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWqngdrnsgstktvgpslgsvigegkiefnESFRLRVTLLRdmnvknkdadtFLKNCLEFNlyeprrdkTQLLATATIDLADYGIVKETlsvnapmnskrsfrntAQPVlfikiqpaeksvsrtssslregfsreasldknggeSVSALMNEEYAEEAesasftdddvssrssptvsstvemnngfpqneeIRSVTLSDSAEGFKKEQalaskshpdksnikaqisphehlkggsSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSsssfisnengkEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEigssnssdsqvngendangktwrmgkVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNqvslgsdspspiredpvnfgtkrnllksdrlknvrsvrsssdiarsngnqkeakengvlgdapnragsfgsperkdykvypRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGqslernssqrgnnnitsplkwkesasrkkdnrnvmrgsfddwedphtLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSrknlertsssgdqeqINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILREsadeiptdpvsdpisDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHdadderqdssfKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNeeyaeeaesasFtdddvssrssptvsstvEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHehlkggssrsssidlsselegHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQsrrasaarsaVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWlsdlfgmddddsldNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

**************IHVDYQIHIQDIKPW***********VMIQW*****************GSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVN*************QPVLFIKI*********************************************************************************************************************************************************************************************************************************************************************KVSMEEGAYLDDYCNDFVKYRM*************************************************************************************************************************************INMLETELREAAAIEASLYSVVAE************RRLSRLYLHACKEDFQ*****AARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATG********************************************************LPSALEKVEAWIFSRIVESIWWQTLTPH********************************INFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILR******************************GAGAQLKNAIGNWSRWLSDLFG*************************SFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAI*****

**************IHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQN**************LGSVIGEGKIEFNESFRLRVT*****************NCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVN****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ARRLSRLYLHACKED**********SAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQ************************************************GSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTP********************************QINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESAD*IPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMD**********************KSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAID****

********NRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPA***************SREASLDKNGGESVSALMNEE***************************EMNNGFPQNEEIRSVTLSDSAEGFKKE*************IKAQIS*******************ELEGHVNCHAPVSNSPNSSPFISKKVIAHAV******************CLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIG**************ANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAE*********APARRLSRLYLHACKEDF***********VSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKW*********NRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCS*************EQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLD*************SSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNG*****STKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEK***********************************AE**E**SF*********************************************************************************************************************************************************AIS*NAEQNCEEVASNNFSAKLASLNEKHPLIQEIGS**********************************************************************************************************************************************************YKVYPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATG******************************************VMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPH*******************************QINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDD******************SSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAID****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii

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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo

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MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFSREASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFPQNEEIRSVTLSDSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSRSSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLRGNDHENLAEVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNSSDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYRMEQEDNGLEREIFEKGRHSAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQKEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRxxxxxxxxxxxxxxxxxxxxxxxxxxxxEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRYFAILVHIAVFHLFEGMPHLWCAIDKEGS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		993
225452142		1114	PREDICTED: uncharacterized protein LOC10	0.953	0.850	0.613	0.0
356571503		1057	PREDICTED: uncharacterized protein LOC10	0.901	0.846	0.537	0.0
356560501		1082	PREDICTED: uncharacterized protein LOC10	0.892	0.818	0.522	0.0
356573956		1054	PREDICTED: uncharacterized protein LOC10	0.917	0.864	0.523	0.0
359473569		1048	PREDICTED: uncharacterized protein LOC10	0.916	0.868	0.489	0.0
147861259		1060	hypothetical protein VITISV_042522 [Viti	0.905	0.848	0.466	0.0
255536959		1002	conserved hypothetical protein [Ricinus	0.536	0.531	0.654	0.0
296090238		911	unnamed protein product [Vitis vinifera]	0.449	0.489	0.715	1e-176
449518035		988	PREDICTED: uncharacterized protein LOC10	0.460	0.462	0.650	1e-168
449455954		988	PREDICTED: uncharacterized protein LOC10	0.460	0.462	0.650	1e-168

>gi\|225452142\|ref\|XP_002270234.1\| PREDICTED: uncharacterized protein LOC100266440 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/988 (61%), Positives = 710/988 (71%), Gaps = 41/988 (4%)

Query: 1   MVLGLSAKNRKEASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGP 60
           MVLG+   NRK  S+HVDY IHIQ+IKPWPPSQSLRS R+V+IQW++GDR SGST +V P
Sbjct: 1   MVLGVRTNNRKSGSVHVDYLIHIQEIKPWPPSQSLRSQRAVLIQWEHGDRTSGSTSSVIP 60

Query: 61  SLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDADTFLKNCLEFNLYEPRRDKT---QLL 117
           +LGS IG+GKIEFNESFRL VTL+R+  +K+ DADTF KNCL+FNLYEPRRDKT   QLL
Sbjct: 61  ALGSGIGDGKIEFNESFRLSVTLVREFALKSGDADTFHKNCLDFNLYEPRRDKTVRGQLL 120

Query: 118 ATATIDLADYGIVKETLSVNAPMNSKRSFRNTAQPVLFIKIQPAEKSVSRTSSSLREGFS 177
            TA +DLADYGI++E  S++ PMN KRSFRNTAQPVLF+KIQP +K   RTSSS R+   
Sbjct: 121 GTAILDLADYGIIREISSISIPMNCKRSFRNTAQPVLFLKIQPVDKG--RTSSSSRDNLL 178

Query: 178 REASLDKNGGESVSALMNEEYAEEAESASFTDDDVSSRSSPTVSSTVEMNNGFP-QNEEI 236
           +EASL K GGESVSAL+NEEYAEEAE  S TDDDVSS SS  VS+ V+ N G P QNE+ 
Sbjct: 179 KEASLHKTGGESVSALINEEYAEEAEITSSTDDDVSSHSSLAVSTAVQSNGGLPHQNEKY 238

Query: 237 RSVTLS---------------DSAEGFKKEQALASKSHPDKSNIKAQISPHEHLKGGSSR 281
               L+               ++  G  +EQA  SK     S+    I PH  L+G SS 
Sbjct: 239 TKFLLNGKLAFEFQNGSERVNNNTGGGNEEQASDSKLRLTNSDTTPIIEPHPSLEGNSSC 298

Query: 282 SSSIDLSSELEGHVNCHAPVSNSPNSSPFISKKVIAHAVQSSSSFISNENGKEEDSPCLR 341
            SSIDLSS+L   VN H  + +SP SS    K+++  +  SSSS I  E  +EE +  +R
Sbjct: 299 MSSIDLSSDLGSPVNGHPSLPDSPESSTSTPKRILTLSSHSSSSSIVYERMEEESNTSIR 358

Query: 342 GNDHENLA-EVQRKLPTGKPAISVNAEQNCEEVASNNFSAKLASLNEKHPLIQEIGSSNS 400
            NDHE+L  E   K+P+GK     NA+Q+  E  SN F AK+AS       ++++  +NS
Sbjct: 359 SNDHEDLPREAHEKVPSGKTETGGNAKQSTGEKISNGFLAKVASPGINSHAVEKLSFANS 418

Query: 401 SDSQVNGENDANGKTWRMGKVSMEEGAYLDDYCNDFVKYR--MEQEDNGLEREIFEKGRH 458
           ++SQ N E         + K  +EEG   D   N  ++ R   EQ++   ERE  E+  H
Sbjct: 419 ANSQANREEYEEEVRRPI-KNGLEEGVTTD---NGPMEDRDEKEQKEYRQERENLEEKEH 474

Query: 459 SAGDEPLNFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDI 518
           S  +EP N  S +ATR Q S GSD+   +     N   K N+L SDRLK+V+SVRSSSD 
Sbjct: 475 SIEEEPSNRVSLDATRKQASSGSDT---LSFSWGNHELKSNILSSDRLKHVKSVRSSSDS 531

Query: 519 ARSN----GNQ--KEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLE 572
           ARSN    GNQ  +EAKE GVLGD  N A  F    RKD  +Y  +TR+  +E KIQQLE
Sbjct: 532 ARSNNLVGGNQFIEEAKEVGVLGDRQNGARGFIGSGRKDTIIY-TETRNTFSERKIQQLE 590

Query: 573 HKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQSRRASA 632
            KI MLE ELREAAAIEA+LYSVVAEHGSSM+KVHAPARRLSR+YLHAC+E  QSRRASA
Sbjct: 591 DKIKMLEGELREAAAIEAALYSVVAEHGSSMNKVHAPARRLSRMYLHACRESSQSRRASA 650

Query: 633 ARSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQR 692
           ARSAVSGL LVAKACGNDVPRLTFWLSN++VLRAIISQA G   Q  +AG S ERN   +
Sbjct: 651 ARSAVSGLALVAKACGNDVPRLTFWLSNAVVLRAIISQAIGIPRQKLSAGSSNERNGIGK 710

Query: 693 GNNNITSPLKWKESASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQ 752
           GNN   SPLKWKE     K+N+N    S  DW+DP+TL SALEK+EAWIFSRI+ES+WWQ
Sbjct: 711 GNNQRLSPLKWKEFPPSSKENKNA--SSLGDWKDPYTLISALEKLEAWIFSRIIESVWWQ 768

Query: 753 TLTPHMQSAAERVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVR 812
           TLTPHMQSAA + +  D  S SRK+  RTS S DQEQ+NF+LD WKKAFKDACERLCPVR
Sbjct: 769 TLTPHMQSAAMKEIYGDTDSDSRKSYGRTSGSSDQEQVNFALDLWKKAFKDACERLCPVR 828

Query: 813 ARGHECGCLPLLARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAG 872
           A GHECGCLP+LA L+MEQCV RLDVAMFNAILRES DEIPTDPVSDPISDSKVLPIPAG
Sbjct: 829 AGGHECGCLPVLASLVMEQCVVRLDVAMFNAILRESVDEIPTDPVSDPISDSKVLPIPAG 888

Query: 873 KSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALS 932
           KSSFGAGAQLKN IGNWSRWL+DLFGMD+DD L+  N+ D +DERQD  FKSFHLLNALS
Sbjct: 889 KSSFGAGAQLKNVIGNWSRWLTDLFGMDEDDLLEEGND-DIEDERQDVLFKSFHLLNALS 947

Query: 933 DLMMLPKDLLLSRSIRKEVSTRFLLALI 960
           DLMMLPKD+LLSRSIRKEV   F   LI
Sbjct: 948 DLMMLPKDMLLSRSIRKEVCPTFGAPLI 975

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356571503\|ref\|XP_003553916.1\| PREDICTED: uncharacterized protein LOC100783487 [Glycine max]	Back alignment and taxonomy information

>gi\|356560501\|ref\|XP_003548530.1\| PREDICTED: uncharacterized protein LOC100775183 [Glycine max]	Back alignment and taxonomy information

>gi\|356573956\|ref\|XP_003555120.1\| PREDICTED: uncharacterized protein LOC100818584 [Glycine max]	Back alignment and taxonomy information

>gi\|359473569\|ref\|XP_002265426.2\| PREDICTED: uncharacterized protein LOC100254476 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147861259\|emb\|CAN81894.1\| hypothetical protein VITISV_042522 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255536959\|ref\|XP_002509546.1\| conserved hypothetical protein [Ricinus communis] gi\|223549445\|gb\|EEF50933.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|296090238\|emb\|CBI40057.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449518035\|ref\|XP_004166049.1\| PREDICTED: uncharacterized protein LOC101224875 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449455954\|ref\|XP_004145715.1\| PREDICTED: uncharacterized protein LOC101208084 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		993
TAIR\|locus:2082319		921	AT3G01810 "AT3G01810" [Arabido	0.481	0.519	0.535	1.3e-193
TAIR\|locus:2169293		848	AT5G43230 "AT5G43230" [Arabido	0.226	0.265	0.572	9.3e-131
TAIR\|locus:2169349		723	AT5G06930 [Arabidopsis thalian	0.224	0.308	0.466	3e-74
TAIR\|locus:2053834		669	AT2G42320 "AT2G42320" [Arabido	0.286	0.424	0.491	2e-71

TAIR\|locus:2082319 AT3G01810 "AT3G01810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1228 (437.3 bits), Expect = 1.3e-193, Sum P(2) = 1.3e-193
 Identities = 267/499 (53%), Positives = 327/499 (65%)

Query:   466 NFCSRNATRNQVSLGSDSPSPIREDPVNFGTKRNLLKSDRLKNVRSVRSSSDIARSNGNQ 525
             N  S+ A+  Q + G     P++ D  N     +   S   +++ S +    I   +   
Sbjct:   309 NESSKLASNGQHNNGEAKSVPLQID--NLSENASPRASVNSQDLTSDQEPESIVEKSRKV 366

Query:   526 KEAKENGVLGDAPNRAGSFGSPERKDYKVYPRDTRSAVAESKIQQLEHKINMLETELREA 585
             K  + +  +  + +R   F   ERK+ KVYP  T     ESKI+ LE ++  LE EL EA
Sbjct:   367 KSVRSSLDINRSNSRLSLFS--ERKEAKVYPNSTHDTTLESKIKNLESRVKKLEGELCEA 424

Query:   586 AAIEASLYSVVAEHGSSMSKVHAPARRLSRLYLHACKEDFQXXXXXXXXXXVSGLVLVAK 645
             AAIEA+LYSVVAEHGSS SKVHAPARRL RLYLHAC+E             VSGLVLVAK
Sbjct:   425 AAIEAALYSVVAEHGSSSSKVHAPARRLLRLYLHACRETHLSRRANAAESAVSGLVLVAK 484

Query:   646 ACGNDVPRLTFWLSNSIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKE 705
             ACGNDVPRLTFWLSN+IVLR IIS  +   E P +AG    +  ++R     +S LKWK+
Sbjct:   485 ACGNDVPRLTFWLSNTIVLRTIISDTSAEEELPVSAGPGPRKQKAERETEKRSS-LKWKD 543

Query:   706 SASRKKDNRNVMRGSFDDWEDPHTLPSALEKVEAWIFSRIVESIWWQTLTPHMQSAAE-- 763
             S   KKD +     SF  W+DP T  +ALEKVEAWIFSR+VESIWWQTLTP MQS+A   
Sbjct:   544 SPLSKKDIK-----SFGAWDDPVTFITALEKVEAWIFSRVVESIWWQTLTPRMQSSAAST 598

Query:   764 RVMDRDIGSCSRKNLERTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPL 823
             R  D+  GS S+K   RT SS +QE  +FSL+ WKKAF++A ERLCP+R  GHECGCLP+
Sbjct:   599 REFDKGNGSASKKTFGRTPSSTNQELGDFSLELWKKAFREAHERLCPLRGSGHECGCLPI 658

Query:   824 LARLIMEQCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLK 883
              ARLIMEQCVARLDVAMFNAILR+S D  PTDPVSDPI+D +VLPIP+  SSFG+GAQLK
Sbjct:   659 PARLIMEQCVARLDVAMFNAILRDSDDNFPTDPVSDPIADLRVLPIPSRTSSFGSGAQLK 718

Query:   884 NAIGNWSRWXXXXXXXXXXXXXXNENEHDADDERQ--DSSFKSFHLLNALSDLMMLPKDL 941
             N+IGNWSRW              ++ + D+ DE    + SFK+F+LL ALSDLMMLPKD+
Sbjct:   719 NSIGNWSRWLTDLFGI-------DDEDDDSSDENSYVEKSFKTFNLLKALSDLMMLPKDM 771

Query:   942 LLSRSIRKEVSTRFLLALI 960
             LL+ S+RKEV   F   LI
Sbjct:   772 LLNSSVRKEVCPMFGAPLI 790

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR\|locus:2169293 AT5G43230 "AT5G43230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169349 AT5G06930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2053834 AT2G42320 "AT2G42320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020541001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (900 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		993
pfam10358		142	pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1	3e-13

>gnl\|CDD\|220715 pfam10358, NT-C2, N-terminal C2 in EEIG1 and EHBP1 proteins	Back alignment and domain information

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 19/144 (13%)

Query: 17  VDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNES 76
             + + I +++  P          + ++W+ GD+   S  T      +++  G+  +NE 
Sbjct: 7   FQFDLSIHELQNVPLVNG-----ELFVKWKRGDKKGNSGTTSK----ALVNNGRAVWNEE 57

Query: 77  FRLRVTLLRDMNVKNKDADTFLKNCLEFNLY-EPRRDKTQLLATATIDLADYGIVKETLS 135
           F +  TL  D     K    F    L F +Y   ++ K ++L  A IDLA+Y   KE  +
Sbjct: 58  FSIPCTLFVD-----KKGGKFEPKLLTFVVYKVTKKGKKKVLGKADIDLAEYANSKEPTT 112

Query: 136 VNAPMNSKRSFRNTAQPVLFIKIQ 159
               +             L I I 
Sbjct: 113 RRLLLKKCSK----KNATLSITIS 132

This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		993
PF10358		143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	99.62
PF01843		105	DIL: DIL domain; InterPro: IPR018444 Dilute encode	96.23
cd08690		155	C2_Freud-1 C2 domain found in 5' repressor element	85.8
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	84.71
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	83.2
cd08393		125	C2A_SLP-1_2 C2 domain first repeat present in Syna	83.2
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	82.26
cd08388		128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	81.98
cd08385		124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	81.37
cd00275		128	C2_PLC_like C2 domain present in Phosphoinositide-	80.78

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []	Back alignment and domain information

Probab=99.62  E-value=2.9e-15  Score=137.30  Aligned_cols=129  Identities=26%  Similarity=0.540  Sum_probs=103.0

Q ss_pred             ceeEEEEEEEeeeecCCCCCccccccceeEEEeecCCCC--CCCcccccCCCcccccCceEEeecceeeeEEEEeecccC
Q 001938           13 ASIHVDYQIHIQDIKPWPPSQSLRSLRSVMIQWQNGDRN--SGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVK   90 (993)
Q Consensus        13 ~sv~vdY~IhIqeIKPWPpSqSLrSlrsVllqWENGd~~--SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~k   90 (993)
                      ..++++|.|+||+|..||+..     -.|.+.|.+|++.  +|+|.      ...+.+|.++|||.|.+++|||++.+. 
T Consensus         3 ~~~kf~~~l~i~~l~~~p~~~-----~~v~v~wkr~~~~~~~~~t~------~~~~~~~~v~w~e~~~~~~tl~~~~k~-   70 (143)
T PF10358_consen    3 KAVKFQFDLTIHELENLPSSN-----GKVFVKWKRGDKSKGSGTTS------RANVKNGKVQWNEEFSFPCTLYRDKKS-   70 (143)
T ss_pred             ceeeEEEEEEEEEeECcCCCC-----CEEEEEEEECCCCccceeee------eeeccccEEEEeeEEEEEEEEEEcCCC-
Confidence            458899999999999999833     4899999999999  55543      346789999999999999999999322 


Q ss_pred             CCCcccccccceEEeecccccccc-cccceeeeccccccccc-cccccccccccccccccCCCceEEEEeeec
Q 001938           91 NKDADTFLKNCLEFNLYEPRRDKT-QLLATATIDLADYGIVK-ETLSVNAPMNSKRSFRNTAQPVLFIKIQPA  161 (993)
Q Consensus        91 g~~~~~FqKN~LEfnLyE~rrdK~-QlLGtA~idLADyGii~-e~~sis~p~n~Krs~rn~~qP~lyv~IqP~  161 (993)
                          ..|+++.|.|.||+....+. +.||++.||||+|.-.. +..+..+||.-.    ....+.|.|+|+-.
T Consensus        71 ----~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~  135 (143)
T PF10358_consen   71 ----KEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS  135 (143)
T ss_pred             ----CcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence                36999999999999854333 79999999999999996 777888888832    33455566665543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains	Back alignment and domain information

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11	Back alignment and domain information

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10	Back alignment and domain information

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		993
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2f6h_X		419	Myosin-2, type V myosin; mysoin V, cargo binding,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.2 bits (150), Expect = 8e-10
 Identities = 62/526 (11%), Positives = 121/526 (23%), Gaps = 199/526 (37%)

Query: 503 SDRLKNVRSVRSSSDIARSNGNQKEAKEN-----GVLGDAPNRAGS--FGSPERKDYK-V 554
            D  K++ S      I       K+A          L                R +YK +
Sbjct: 39  QDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 555 YPRDTRSAVAESKIQQLEHKINMLETELREAAAIEASLYSVVAEHGSSMSKVHAPARRLS 614
                      S I+  E +   + T +         LY+         +K +    RL 
Sbjct: 95  M----------SPIKT-EQRQPSMMTRMYIEQ--RDRLYNDN----QVFAKYNVS--RLQ 135

Query: 615 RLYLHACKEDFQSRRASAARSAVSGL------VLVAKACGNDVPRLT------FWLS--N 660
                  ++     R  A    + G+       +    C              FWL+  N
Sbjct: 136 PY--LKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFWLNLKN 191

Query: 661 SIVLRAIISQATGRLEQPFAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGS 720
                 ++      L Q       ++ N + R +++    L       R    +  +R  
Sbjct: 192 CNSPETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKL-------RIHSIQAELRRL 237

Query: 721 FDDWEDPHTLPSALEKVEAWIFSRIVESIW----WQTLTPHMQSAAERVMDRDIGSC--- 773
                  + L   L          ++ ++     W                 ++  C   
Sbjct: 238 LKSKPYENCL---L----------VLLNVQNAKAWNAF--------------NLS-CKIL 269

Query: 774 --SRKNLERTSSSGDQEQINFSLDHWKKAF-KDACERLCPVRARGHECGCLPLLARLIME 830
             +R   + T         + SLDH       D  + L  ++        LP        
Sbjct: 270 LTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNP 327

Query: 831 QCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWS 890
                  +++                                         +++ +  W 
Sbjct: 328 -----RRLSII-------------------------------------AESIRDGLATWD 345

Query: 891 RWLSDLFGMDDDDSLDNENEHDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKE 950
            W                     + ++  +  +S   LN L      P +       RK 
Sbjct: 346 NWK------------------HVNCDKLTTIIESS--LNVLE-----PAEY------RK- 373

Query: 951 VSTRFLLALIVYLRYFAIL---VHI--AVFHLFEGMPHLWCAIDKE 991
                           ++     HI   +  L      +W  + K 
Sbjct: 374 -----------MFDRLSVFPPSAHIPTILLSL------IWFDVIKS 402

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae} Length = 419	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		993
2f6h_X		419	Myosin-2, type V myosin; mysoin V, cargo binding,	97.18
3mmi_A		386	Myosin-4; globular tail, dilute domain, motor prot	96.04
1ugk_A		138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	90.48
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	86.57
2enp_A		147	B/K protein; C2 type 1,beta sandwich, structural g	83.89
3pyc_A		132	E3 ubiquitin-protein ligase smurf1; phospholipid b	81.05
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	80.77

>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=97.18  E-value=0.00026  Score=76.85  Aligned_cols=270  Identities=14%  Similarity=0.172  Sum_probs=162.4

Q ss_pred             ccccCchhhhhhHHHHHHhcccchhhhhHHHhhhccceEEEeecc-cCC-CCcchhhhhhHHHHHHHH--HHHhcCCCCC
Q 001938          603 MSKVHAPARRLSRLYLHACKEDFQSRRASAARSAVSGLVLVAKAC-GND-VPRLTFWLSNSIVLRAII--SQATGRLEQP  678 (993)
Q Consensus       603 ~hKvHtPARRLSRlYiHAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWlSN~iVLReII--sqa~~~~~~~  678 (993)
                      .+-+-.||.=|-..-.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+  .|......  
T Consensus        44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~--  121 (419)
T 2f6h_X           44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTE--  121 (419)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhcc--
Confidence            445668888877666667777444444344334444444444455 467 588999999999999988  44431000  


Q ss_pred             CccccccccCcccCCCCCCCCccccccccccccccccccCCCCCCCCC----cccHHHHHHhhHHHhhhhhhhhhhhc--
Q 001938          679 FAAGQSLERNSSQRGNNNITSPLKWKESASRKKDNRNVMRGSFDDWED----PHTLPSALEKVEAWIFSRIVESIWWQ--  752 (993)
Q Consensus       679 ~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~~~~dW~e----~~Tf~~ALeKvEsWIFSRIVESVWWQ--  752 (993)
                                + +  .   ..++                  ...+|.+    ...|...|+-+.-.||+.++..+-=.  
T Consensus       122 ----------~-~--~---~~~~------------------~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~  167 (419)
T 2f6h_X          122 ----------E-T--F---KNGM------------------TDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQ  167 (419)
T ss_dssp             ----------C-C---------C------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------C-c--c---cccc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0 0  0   0000                  0012221    33456678888889999877554311  


Q ss_pred             -ccCccccchhhcccccccCcccccccC-CcCCCCccccccchHHHHHHHHHHHHHhcCcCCCCCCCccchHHHHHHHHH
Q 001938          753 -TLTPHMQSAAERVMDRDIGSCSRKNLE-RTSSSGDQEQINFSLDHWKKAFKDACERLCPVRARGHECGCLPLLARLIME  830 (993)
Q Consensus       753 -~lTPhMQs~~~~~~~~~~~s~s~k~~g-r~~~lgDq~Qg~fSI~LWK~AF~dA~eRlCPlRAgGHECGCLPVLaRlVME  830 (993)
                       .+.|-||.+..-   +  +-...+..| +......  +...+++-=-+-|...+..++       .|+==|.|.++++.
T Consensus       168 p~l~paIl~~~~~---~--~~~~~~~~~~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fs  233 (419)
T 2f6h_X          168 KKAINAVVISESL---P--GFSAGETSGFLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVT  233 (419)
T ss_dssp             HHHHHHHTTSCSS---T--TTTC-----------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHH
T ss_pred             HHHHHHHhCcccc---c--ccccccccccccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHH
Confidence             233444432210   0  000001011 0001111  112333322333333333332       35556999999999


Q ss_pred             HHHHhhHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccCCCCccccccchhhhhhhchHHHHhhhcCCCCCCCccccCC
Q 001938          831 QCVARLDVAMFNAILRESADEIPTDPVSDPISDSKVLPIPAGKSSFGAGAQLKNAIGNWSRWLSDLFGMDDDDSLDNENE  910 (993)
Q Consensus       831 QCVaRLDVAMFNAILRESa~eiPTDPiSDPI~DskVLPIPaG~lSFGaGAQLKNaIGnWSRwLtDlfgid~dds~e~~~~  910 (993)
                      |...=+++-+||.+|-..                       +-.+|-.|.|+|--|..--.|+.+. |+.          
T Consensus       234 Qlf~~In~~lFN~LL~r~-----------------------~~cs~s~G~qIr~nls~Le~W~~~~-~l~----------  279 (419)
T 2f6h_X          234 TLLNYVDAICFNELIMKR-----------------------NFLSWKRGLQLNYNVTRLEEWCKTH-GLT----------  279 (419)
T ss_dssp             HHHHHHHHHHHHHHHTCS-----------------------SCCCHHHHHHHHHHHHHHHHHHHHT-TCT----------
T ss_pred             HHHHHHHHHHHHHHhccC-----------------------cccchhhHHHHHhhHHHHHHHHHHc-CCh----------
Confidence            999999999999998532                       2478999999999999999999883 331          


Q ss_pred             CCcccccccCCCcchhhhHhhhhccccchhhcccccchhhhccccchHHHHHHHH
Q 001938          911 HDADDERQDSSFKSFHLLNALSDLMMLPKDLLLSRSIRKEVSTRFLLALIVYLRY  965 (993)
Q Consensus       911 ~~~~~~~~~~~~k~F~LLNaLSDLLMLPKDML~d~SiRKEVCP~~~lpLIkR~~~  965 (993)
                               .....|.=|+.++.||.++|.-+.|-....++||.++..=|.||+.
T Consensus       280 ---------~a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~  325 (419)
T 2f6h_X          280 ---------DGTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLIS  325 (419)
T ss_dssp             ---------THHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             ---------hHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHH
Confidence                     0122477788999999999998888888999999999888888653

PyMOL of 2f6h

>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}	Back alignment and structure

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*	Back alignment and structure

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		993
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	89.7
d1wfma_		138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	87.98
d1dqva2		145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	86.94
d1rsya_		143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	85.51
d2bwqa1		125	Regulating synaptic membrane exocytosis protein, r	81.92

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.70  E-value=0.34  Score=40.58  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             EEEEeeeecCCCCCcc--cccc--ceeEEEeecCCCCCCCcccccCCCcccccCceEEeecceeeeEEEEeecccCCCCc
Q 001938           19 YQIHIQDIKPWPPSQS--LRSL--RSVMIQWQNGDRNSGSTKTVGPSLGSVIGEGKIEFNESFRLRVTLLRDMNVKNKDA   94 (993)
Q Consensus        19 Y~IhIqeIKPWPpSqS--LrSl--rsVllqWENGd~~SGsT~~V~PSlgs~vG~GkIeFnEsFrL~vtL~ke~s~kg~~~   94 (993)
                      ..|.|.+-+-+|....  +-+.  .-|.++-.........|.++       -+...-.|||.|.+++.            
T Consensus         5 l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~-------~~t~nP~wne~f~f~i~------------   65 (126)
T d1rlwa_           5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-------NNDINPVWNETFEFILD------------   65 (126)
T ss_dssp             EEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCC-------TTCSSCEEEEEEEEEEC------------
T ss_pred             EEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeec-------CCCccceeceeeeeccc------------
Confidence            4566777777774321  1111  24555553222344555555       22234579999988761            


Q ss_pred             ccccccceEEeecccccccccccceeeeccccccccccccccccccc
Q 001938           95 DTFLKNCLEFNLYEPRRDKTQLLATATIDLADYGIVKETLSVNAPMN  141 (993)
Q Consensus        95 ~~FqKN~LEfnLyE~rrdK~QlLGtA~idLADyGii~e~~sis~p~n  141 (993)
                       .-+...|+|.+|+-..-+-++||.+.|+|+++= ..+.....+|++
T Consensus        66 -~~~~~~L~v~V~d~d~~~d~~lG~~~i~L~~l~-~~~~~~~~~~L~  110 (126)
T d1rlwa_          66 -PNQENVLEITLMDANYVMDETLGTATFTVSSMK-VGEKKEVPFIFN  110 (126)
T ss_dssp             -TTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSC-TTCEEEEEEEET
T ss_pred             -CcccCcEEEEEEECCCCCCCeEEEEEEEHHHcc-CCCeEEEEEEcc
Confidence             123457999999864333389999999999972 233344666664

PyMOL of d1rlwa_

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure