Citrus Sinensis ID: 001945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990--
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQRNLLK
cHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccc
cHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEccccccc
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITghwaklspQLKQLVKQSLIESitlehsapvrraSANVVSIIAKYavpagewpdllpflFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFleftndgaevvkfreFIPSILNVSRQCLASGEEDVAVIAFEIFDEliespapllgdsVKSIVHFSLEvssshnlepntrHQAIQIISWLAKYKYnslkkhklvIPILQVMCpllaesneagedddlapdRAAAEVIDTMALNLakhvfppvfefasvscqnaspKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGalrdpeqfVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEdesdevkeKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESvgrarmepilppfVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPlafsscnlddgsavdidgsddeningfggvssddeahcersVRNISVRTGVLDEKAAATQALGLFAlhtkssyapfLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQshnegpakAREILDTVMNIFIRTmtedddkdVVAQACTSIVEIIndygymavepyMSRLVDATLLLLREestcqqpdndsdieddddtahDEVIMDAVSDLLPAFaksmgphfapIFAKLFDPLmkfakssrplqdrTMVVATLAEVARDMGSPIAAYVDRVMPLVLKelaspdamnrrnAAFCVGELCKNGGESALKYYGDILrglyplfgdsepddavRDNAAGAVARMIMVnpqsiplnqvLPVLLKvlplkedfeeSMAVYNCISTLvlssnpqlfhqrnllk
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHlrtaktpnvRQLAAVLLRKKITGhwaklspqlKQLVKQSLIESitlehsapvrrASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVssshnlepntrHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFggvssddeahcERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTmtedddkdvVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEStcqqpdndsdieddDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAkssrplqdrtMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPqsiplnqvLPVLLKVLPLKEDFEESMAVYNCISTlvlssnpqlfhqrnllk
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPdndsdieddddtahdEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQvlpvllkvlplkEDFEESMAVYNCISTLVLSSNPQLFHQRNLLK
******LLLIQFLM********************QVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQS***EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVS*******NTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA****************AAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDI************************SVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIR***********AQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLR************************VIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDS****AVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSS************
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQ**Q*EHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKY*********LVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST*******SDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFH******
MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQRNLLK
*AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENIN******SDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQ*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQRNLLK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query992 2.2.26 [Sep-21-2011]
O601001067 Probable importin subunit yes no 0.986 0.917 0.272 1e-94
Q8VI751082 Importin-4 OS=Mus musculu yes no 0.970 0.890 0.284 7e-89
Q8TEX91081 Importin-4 OS=Homo sapien yes no 0.967 0.888 0.288 8e-87
P400691113 Importin subunit beta-4 O yes no 0.942 0.840 0.255 6e-74
O004101097 Importin-5 OS=Homo sapien no no 0.958 0.866 0.249 5e-70
Q8BKC51097 Importin-5 OS=Mus musculu no no 0.958 0.866 0.247 1e-69
Q8BIV31105 Ran-binding protein 6 OS= no no 0.964 0.866 0.246 7e-59
O605181105 Ran-binding protein 6 OS= no no 0.964 0.866 0.243 2e-58
O744761095 Importin subunit beta-3 O no no 0.950 0.861 0.234 8e-47
Q54EW31067 Probable importin-5 homol no no 0.929 0.864 0.227 2e-45
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function desciption
 Score =  348 bits (893), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 276/1014 (27%), Positives = 495/1014 (48%), Gaps = 35/1014 (3%)

Query: 4    SLEL--LLIQFLMPDNDARRQAEDQIK-RLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
            +LEL  LL Q + PD     +A   ++ +  K+P  + +L   + T + P VRQLAA+  
Sbjct: 6    TLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFHIMGTCENPQVRQLAAIEA 65

Query: 61   RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
            RK    +W+ +   ++  ++ +L++    E  + VR A   V++ +AK  +P G+W +L 
Sbjct: 66   RKLCHKYWSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRVIAALAKLDLPEGKWNELS 125

Query: 121  PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
             FL Q +  + +  RE+A+ +  S+ ET+    +    D   L  + + D +S  VR+ +
Sbjct: 126  AFLVQATMDQNDSIREMAVYVLYSIAETVDLDNK-LLLDFVNLFSQTITD-SSRTVRVTS 183

Query: 181  LKAIGSFLEF--TNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPA 238
            ++ +G+  E   ++D   +  +R  +P +L V +  +  G+ D +   F++F+  + +  
Sbjct: 184  VQGLGAIAEVLESDDKKLLHAYRATLPGMLLVLQDVVQVGDVDASKQVFDVFNTFLIASG 243

Query: 239  PLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMC 298
             ++  ++ +I+     +++S  ++   R  A+  I    ++K   L+  KL  P++  + 
Sbjct: 244  AIISKALGNIIEIITGIANSKQVDDEIRCMALSFIISCIRFKSRKLQALKLGKPLVLTLM 303

Query: 299  PLLAESNEAGEDDDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAA 357
             +  E      D+D  P R A   ID ++ +L+   VF P+FE A    Q+    YR+AA
Sbjct: 304  EVATEETTDDIDED-CPARLALRSIDLLSTHLSPSQVFYPMFEAACAFSQSPQASYRKAA 362

Query: 358  VTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHY 417
            + +IG+  EG +E +   L ++  I++  L D +  VR AA  AL Q A  +  E+  H+
Sbjct: 363  LLSIGVAVEGSSESVAGNLPNIFPIIINGLCDNDMDVRQAALLALSQIAVEIPTEVSKHH 422

Query: 418  ESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE-EILPFLDPLMGKLLAALENSPRNL 476
              +LP +   +  +  +V + +   + A  E + + EI  +L  LM +L+  LE S    
Sbjct: 423  AQLLPLVFELMSTQGVKVGKSACNCIDALLEGLDKSEISGYLPMLMERLVGLLEFSDTPD 482

Query: 477  QETCMSAIGSVAAAAEQ-AFIPYAERVL-ELLKIFMVLTNDEDLRSRARATELLGLVAES 534
             ++C++A    AA A Q  FIPY ER +  L +      +DE    R    + LG +A +
Sbjct: 483  IKSCVAAAIGSAAFAAQDDFIPYFERTMASLSQCLHTTDDDEGYELRGTVMDTLGAIANA 542

Query: 535  VGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFS 594
            VG+    P     ++ A  G  ++ S LRE +  F++ +A V ++ FA +L  +VP  F 
Sbjct: 543  VGKQAFLPYTEQLIQLAYEGIQIDHSRLRECSFCFYAVLARVYKEEFAPFLEHIVPALFK 602

Query: 595  SCNLDDGSAVD--IDGSDDENING-FGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQA 651
            S + D+   +   I     E I+     V +++E + E   + + V + +  EK  A  A
Sbjct: 603  SIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNSAIAMEKEIAADA 662

Query: 652  LGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGP 711
            LG   ++  + + P+LE +++ LV   ++F+E VR  A+ +L    T  + +       P
Sbjct: 663  LGEICMYVGAPFTPYLEPTVEKLVACTTHFYEGVRKSALSSLWRCATTYYKVCNVPQWQP 722

Query: 712  AKARE--ILDTVMNIF-------IRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMS 762
                +  + DTV NIF         T+ E+ +K V      +  E I   G + +     
Sbjct: 723  GLPLKVPVPDTVKNIFEAVRKCTFDTLEEEYEKTVATDILRNFAESIKTCGPVVLGDDYE 782

Query: 763  RLVDATLLLLREESTCQQPDN-DSDIEDD--------DDTAHDEVIMDAVSDLLPAFAKS 813
            +L +  + +L+++   Q  D  D D E++        DDT  D +++D+  D++ A A +
Sbjct: 783  KLCEVVMEVLQKQHIVQAGDVFDDDFEEEDIVSNEEVDDTEQDALLIDSACDVVIALAVA 842

Query: 814  MGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLK 873
            +G  FA  F   +  ++K+  S     +R M VA + EVA  + S I  +   V  L + 
Sbjct: 843  LGGSFADSFKVFYPQIVKYYMSKNG-NERAMAVACVGEVAGGIESAITPFTRDVFSLFMA 901

Query: 874  ELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAV 933
             L   +   R NAA+ +G LC+   E     Y +IL+ L P F       A+ DNA G +
Sbjct: 902  ALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQPFFTQEVFRTAL-DNAIGCI 960

Query: 934  ARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQ 987
            +R+I+ N  +IP++QVLP++   LPLKED+ E+  +Y+ I  L    NP L   
Sbjct: 961  SRLILHNQNAIPVDQVLPIVFSKLPLKEDYLENAPLYHMILALYRQQNPCLVQH 1014
Required for nuclear protein import, its predominant substrate seems to be ribosomal proteins. Binds to nucleoporins and the GTP-bound form of gsp1 (Ran).
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q8VI75|IPO4_MOUSE Importin-4 OS=Mus musculus GN=Ipo4 PE=1 SV=1 Back     alignment and function description
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function description
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query992
2254479591048 PREDICTED: probable importin subunit bet 0.991 0.938 0.858 0.0
2241013431048 predicted protein [Populus trichocarpa] 0.991 0.938 0.852 0.0
3565287991048 PREDICTED: probable importin subunit bet 0.991 0.938 0.838 0.0
3565584851048 PREDICTED: probable importin subunit bet 0.991 0.938 0.837 0.0
2241090241048 predicted protein [Populus trichocarpa] 0.991 0.938 0.847 0.0
4494570551046 PREDICTED: probable importin subunit bet 0.989 0.938 0.827 0.0
1477785671028 hypothetical protein VITISV_007422 [Viti 0.971 0.937 0.827 0.0
223289821048 armadillo/beta-catenin-like repeat-conta 0.998 0.945 0.797 0.0
2977992101048 importin beta-2 subunit family protein [ 0.998 0.945 0.796 0.0
2181924741047 hypothetical protein OsI_10833 [Oryza sa 0.989 0.937 0.759 0.0
>gi|225447959|ref|XP_002267673.1| PREDICTED: probable importin subunit beta-4 [Vitis vinifera] gi|298204504|emb|CBI23779.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1753 bits (4539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 846/985 (85%), Positives = 917/985 (93%), Gaps = 1/985 (0%)

Query: 1   MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
           MAQSLELLLIQFLMPDNDARRQAE+QIKRLAKDPQV+PAL+ HLRTAKTPNVRQL+AVLL
Sbjct: 1   MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALIHHLRTAKTPNVRQLSAVLL 60

Query: 61  RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
           RKKITGHWAKLSPQL+ LVKQSLIESIT+EHS PVRRASANVVSI+AKYAVPAGEWPDLL
Sbjct: 61  RKKITGHWAKLSPQLRHLVKQSLIESITMEHSPPVRRASANVVSIVAKYAVPAGEWPDLL 120

Query: 121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
           PFLFQ SQS QE+HREVALILFSSLTETIG  FRPHFAD+QALLLKCLQDETSNRVR+AA
Sbjct: 121 PFLFQCSQSAQEDHREVALILFSSLTETIGIAFRPHFADLQALLLKCLQDETSNRVRVAA 180

Query: 181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
           LKA+GSFLEFT DGAEVVKFREFIPSILNVSRQCLASGEEDVA+IAFEIFDELIESPAPL
Sbjct: 181 LKAVGSFLEFTQDGAEVVKFREFIPSILNVSRQCLASGEEDVAIIAFEIFDELIESPAPL 240

Query: 241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
           LGDSVKSIV FSL+V SS NLE NTRHQAIQIISWLAKYK NSLKKHKLVIPILQVMCPL
Sbjct: 241 LGDSVKSIVQFSLDVCSSQNLESNTRHQAIQIISWLAKYKSNSLKKHKLVIPILQVMCPL 300

Query: 301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
           LAES    EDDDLAPDRAAAEVIDTMALNL+KH+FPPVFEFAS+S Q+A+PKYREA+ T 
Sbjct: 301 LAESANGDEDDDLAPDRAAAEVIDTMALNLSKHMFPPVFEFASLSSQSANPKYREASATV 360

Query: 361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
           +G+ISEGC + MK+KLE +LHIVLGALRDPEQ VRGAASFALGQFAE+LQPEIVSHYESV
Sbjct: 361 LGVISEGCLDLMKDKLEPILHIVLGALRDPEQMVRGAASFALGQFAEHLQPEIVSHYESV 420

Query: 421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
           LPCILNALED SDEVKEKSYYALAAFCE+MGEEILPFLDPLMGKLLAAL+NSPRNLQETC
Sbjct: 421 LPCILNALEDASDEVKEKSYYALAAFCENMGEEILPFLDPLMGKLLAALQNSPRNLQETC 480

Query: 481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
           MSAIGSVAAAAEQAF+PYAERVLEL+K FMVLTNDEDLRSRARATEL+G+VA SVGR +M
Sbjct: 481 MSAIGSVAAAAEQAFVPYAERVLELMKNFMVLTNDEDLRSRARATELVGMVAMSVGRIKM 540

Query: 541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
           EPILPPF+EAAISGF LEFSELREYTHGFFSN+A +++D F QYLP VVPLAFSSCNLDD
Sbjct: 541 EPILPPFIEAAISGFALEFSELREYTHGFFSNLAEIMDDSFTQYLPHVVPLAFSSCNLDD 600

Query: 601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
           GSAVDID SDDENINGFGGVSSDDEAH E  VRNIS+RTGVLDEKAAATQALGLFALHTK
Sbjct: 601 GSAVDIDESDDENINGFGGVSSDDEAHDEPRVRNISIRTGVLDEKAAATQALGLFALHTK 660

Query: 661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDT 720
            SYAP+LEESLKILVRH+ YFHEDVR QA+ ALK +LTAA A+FQ HNEGPAKA+EI+DT
Sbjct: 661 GSYAPYLEESLKILVRHSGYFHEDVRLQAIIALKYMLTAAEAVFQGHNEGPAKAKEIIDT 720

Query: 721 VMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQ 780
           VMNI+I+TMTEDDDK+VVAQAC S  EII D+GYMAVEPYM +LV+ATL+LLREES CQQ
Sbjct: 721 VMNIYIKTMTEDDDKEVVAQACMSTAEIIKDFGYMAVEPYMPQLVEATLVLLREESACQQ 780

Query: 781 PDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQ 840
            ++DSDI DD+DT HDEV+MDAVSDLLPAFAKSMGPHFAP FA LF+PLMKFAKSSRP Q
Sbjct: 781 QESDSDI-DDNDTEHDEVLMDAVSDLLPAFAKSMGPHFAPTFATLFNPLMKFAKSSRPPQ 839

Query: 841 DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGES 900
           DRTMVVA LAEVA+DMG+PIA YVD +MPLVLKELAS +A NRRNAAFCVGELCKNGGES
Sbjct: 840 DRTMVVACLAEVAQDMGAPIAGYVDALMPLVLKELASSEATNRRNAAFCVGELCKNGGES 899

Query: 901 ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLK 960
            LKYYGDILRGLYPLFG+SEPDDAVRDNAAGAVARMIMV+P++IPLNQVLPV LKVLPLK
Sbjct: 900 TLKYYGDILRGLYPLFGESEPDDAVRDNAAGAVARMIMVHPEAIPLNQVLPVFLKVLPLK 959

Query: 961 EDFEESMAVYNCISTLVLSSNPQLF 985
           ED EES+AV+ C+  LV++SNPQ+ 
Sbjct: 960 EDREESIAVFTCVCNLVVASNPQIL 984

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224101343|ref|XP_002312242.1| predicted protein [Populus trichocarpa] gi|222852062|gb|EEE89609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356528799|ref|XP_003532985.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|356558485|ref|XP_003547537.1| PREDICTED: probable importin subunit beta-4-like [Glycine max] Back     alignment and taxonomy information
>gi|224109024|ref|XP_002315055.1| predicted protein [Populus trichocarpa] gi|222864095|gb|EEF01226.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457055|ref|XP_004146264.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] gi|449495557|ref|XP_004159877.1| PREDICTED: probable importin subunit beta-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147778567|emb|CAN76102.1| hypothetical protein VITISV_007422 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22328982|ref|NP_194494.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|17065302|gb|AAL32805.1| putative protein [Arabidopsis thaliana] gi|38564254|gb|AAR23706.1| At4g27640 [Arabidopsis thaliana] gi|332659973|gb|AEE85373.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799210|ref|XP_002867489.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297313325|gb|EFH43748.1| importin beta-2 subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|218192474|gb|EEC74901.1| hypothetical protein OsI_10833 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query992
TAIR|locus:21377171048 AT4G27640 "AT4G27640" [Arabido 0.998 0.945 0.780 0.0
MGI|MGI:19230011082 Ipo4 "importin 4" [Mus musculu 0.544 0.499 0.265 1e-96
DICTYBASE|DDB_G02703361103 ipo4 "importin 4" [Dictyosteli 0.694 0.624 0.287 1e-95
POMBASE|SPBC14F5.03c1067 kap123 "karyopherin Kap123" [S 0.777 0.722 0.266 2.5e-95
UNIPROTKB|Q8TEX91081 IPO4 "Importin-4" [Homo sapien 0.546 0.501 0.270 1.6e-94
RGD|13052061083 Ipo4 "importin 4" [Rattus norv 0.486 0.445 0.274 2.1e-92
ZFIN|ZDB-GENE-041014-3071085 ipo4 "importin 4" [Danio rerio 0.608 0.556 0.307 6.8e-79
UNIPROTKB|E2RSV01079 IPO4 "Uncharacterized protein" 0.643 0.591 0.293 1.3e-65
FB|FBgn00421771079 CG32164 [Drosophila melanogast 0.778 0.715 0.230 1.8e-53
FB|FBgn00870131105 Karybeta3 "Karyopherin beta 3" 0.470 0.422 0.293 1.9e-62
TAIR|locus:2137717 AT4G27640 "AT4G27640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3947 (1394.5 bits), Expect = 0., P = 0.
 Identities = 775/993 (78%), Positives = 882/993 (88%)

Query:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60
             MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL
Sbjct:     1 MAQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLL 60

Query:    61 RKKITGHWAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLL 120
             RK+ITGHWAKLSPQLKQ VKQSLIESIT+E+S PVRRASANVVS++AKYAVPAGEWPDLL
Sbjct:    61 RKRITGHWAKLSPQLKQHVKQSLIESITVENSPPVRRASANVVSVVAKYAVPAGEWPDLL 120

Query:   121 PFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQALLLKCLQDETSNRVRIAA 180
              FLFQ SQS QE+HREVALILFSSLTETIG TFRP+FAD+QALLLKC+QDE+S+RVR+AA
Sbjct:   121 TFLFQCSQSAQEDHREVALILFSSLTETIGNTFRPYFADLQALLLKCMQDESSSRVRVAA 180

Query:   181 LKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL 240
             LKA+GSFLEFTNDG EVVKFR+FIPSIL+VSR+C+ASGEEDVA++AFEIFDELIESPAPL
Sbjct:   181 LKAVGSFLEFTNDGDEVVKFRDFIPSILDVSRKCIASGEEDVAILAFEIFDELIESPAPL 240

Query:   241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPL 300
             LGDSVK+IV FSLEVS + NLE +TRHQAIQI+SWLAKYKYNSLKKHKLVIPILQVMCPL
Sbjct:   241 LGDSVKAIVQFSLEVSCNQNLESSTRHQAIQIVSWLAKYKYNSLKKHKLVIPILQVMCPL 300

Query:   301 LAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTA 360
             LAES++  +DDDLAPDRA+AEVIDT+A+NL KHVF PV EFASV CQ+ + K+REA+VTA
Sbjct:   301 LAESSDQEDDDDLAPDRASAEVIDTLAMNLPKHVFLPVLEFASVHCQSTNLKFREASVTA 360

Query:   361 IGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESV 420
             +G+ISEGC + MKEKL++VL+IVLGALRDPE  VRGAASFA+GQFAE+LQPEI+SHY+SV
Sbjct:   361 LGVISEGCFDLMKEKLDTVLNIVLGALRDPELVVRGAASFAIGQFAEHLQPEILSHYQSV 420

Query:   421 LPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETC 480
             LPC+L A+ED S+EVKEKS+YALAAFCE+MGEEI+P LD LMGKL+AALENSPRNLQETC
Sbjct:   421 LPCLLIAIEDTSEEVKEKSHYALAAFCENMGEEIVPLLDHLMGKLMAALENSPRNLQETC 480

Query:   481 MSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARM 540
             MSAIGSVAAAAEQAF PYAERVLEL+K FMVLT DEDLR+RAR+TEL+G+VA SVGR  M
Sbjct:   481 MSAIGSVAAAAEQAFNPYAERVLELMKFFMVLTKDEDLRARARSTELVGIVAMSVGRKGM 540

Query:   541 EPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
             E ILPPF++AAISGF LEFSELREYTHGFFSN+A +L+D FAQYLP V+PL F+SCNLDD
Sbjct:   541 EAILPPFIDAAISGFELEFSELREYTHGFFSNVAEILDDTFAQYLPRVMPLVFASCNLDD 600

Query:   601 GSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTK 660
             GSAVDID SDDEN+N FGGVSSDD+A  E  VRNISVRTGVLDEKAAATQALGLFALHTK
Sbjct:   601 GSAVDIDESDDENVNDFGGVSSDDDADDEPRVRNISVRTGVLDEKAAATQALGLFALHTK 660

Query:   661 SSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDT 720
             S++AP+LEESLKI+ +H++YFHEDVR QAV  LK+IL AAHAIFQ+HN+G  KA EILDT
Sbjct:   661 SAFAPYLEESLKIMDKHSAYFHEDVRLQAVTGLKHILAAAHAIFQTHNDGTGKANEILDT 720

Query:   721 VMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQ 780
             VMN +I+TMT+DDDK+VVAQAC S+ +I+ DYGY A++ Y+S LVDATLLLL E++ CQQ
Sbjct:   721 VMNNYIKTMTDDDDKEVVAQACISVADIMKDYGYPAIQKYLSPLVDATLLLLTEKAACQQ 780

Query:   781 PXXXXXXXXXXXXXXXEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQ 840
                             EV+MDAVSDLLPAFAK MG  F P+FA+ F+PLMKFAK+SRP Q
Sbjct:   781 -LEDESDIDDDDTGHDEVLMDAVSDLLPAFAKCMGSQFEPVFAQFFEPLMKFAKASRPPQ 839

Query:   841 DRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGES 900
             DRTMVVA+LAEVA+DMG PI++YVDR+MPLVLKEL SP+A NRRNAAFCVGELCKNGGE+
Sbjct:   840 DRTMVVASLAEVAQDMGLPISSYVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGET 899

Query:   901 ALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIPLNQXXXXXXXXXXXX 960
             ALKY+GD+LRG+ PLFGDSEPD AVRDNAAGA ARMI+V+PQ +PLNQ            
Sbjct:   900 ALKYFGDVLRGISPLFGDSEPDLAVRDNAAGATARMIVVHPQLVPLNQVLPVFLRGLPLK 959

Query:   961 EDFEESMAVYNCISTLVLSSNPQLF-HQRNLLK 992
             ED EESMAVY CI +LV SSNPQ+F H   L+K
Sbjct:   960 EDQEESMAVYTCIYSLVSSSNPQIFSHVPELVK 992
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
MGI|MGI:1923001 Ipo4 "importin 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0270336 ipo4 "importin 4" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC14F5.03c kap123 "karyopherin Kap123" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TEX9 IPO4 "Importin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305206 Ipo4 "importin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041014-307 ipo4 "importin 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSV0 IPO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0042177 CG32164 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0087013 Karybeta3 "Karyopherin beta 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00026483001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (1048 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00034559001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)
   •    0.490
GSVIVG00000429001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (534 aa)
   •    0.461
GSVIVG00020673001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)
   •    0.435
GSVIVG00019376001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)
   •    0.428
GSVIVG00001176001
SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (605 aa)
   •    0.427
GSVIVG00025547001
RecName- Full=DNA-directed RNA polymerase; EC=2.7.7.6; (1518 aa)
   •    0.413
GSVIVG00016571001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (474 aa)
   •    0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query992
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 2e-24
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 5e-13
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 5e-11
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 3e-05
COG5656970 COG5656, SXM1, Importin, protein involved in nucle 1e-04
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 0.003
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 2e-24
 Identities = 129/651 (19%), Positives = 235/651 (36%), Gaps = 76/651 (11%)

Query: 13  LMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAVLLRKKITGH-- 67
           L PD +AR +AE Q+  L      Q +  LVQ L    +   +R +A ++L+  +  +  
Sbjct: 15  LSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDP 74

Query: 68  ---------WAKLSPQLKQLVKQSLIESITLEHSAP-VRRASANVVSIIAKYAVPAGEWP 117
                    W  +  + K+ VK   +    L+   P     +A +++ IA+  +P   WP
Sbjct: 75  ELQKGCSQRWLGMRHESKEQVKGMALR--ALKSPEPRFCTMAAQLLAAIARMELPNSLWP 132

Query: 118 DLLPFLFQFSQSEQEEH--REVALILFSSLTETIGQTFRPHF-ADMQALLLKCLQDETSN 174
            L+  + +    EQ      E   I          +         + A+++  L++ET++
Sbjct: 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTS 192

Query: 175 RVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELI 234
            VR+AALKA+   L F         + E     + V  +     +E++   AF   ++++
Sbjct: 193 AVRLAALKALMDSLMFVQ---GNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM 249

Query: 235 ESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW--------------LAKYK 280
                L    ++S +  +L   +   ++      AIQ + +                   
Sbjct: 250 M----LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305

Query: 281 YNSLKKHKL----VIPILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTMALNLAKHVFP 336
               + H      V  +L  +  LL +  E    DD  P  AA+  +   A      +  
Sbjct: 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR 365

Query: 337 PVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKL-ESVLHIVLGALRDPEQFVR 395
           PV  F   + ++ S   REAAV A G +  G  E    K+    L  +   + D   +V+
Sbjct: 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425

Query: 396 GAASFALGQFAEYLQPEIVS---HYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGE 452
              ++  G  A+++   I+S   H    +   L  L D        S +      + + +
Sbjct: 426 STTAWCFGAIADHV-AMIISPCGHLVLEVSASLIGLMDCPFRSINCS-WRKENLVDHIAK 483

Query: 453 E-------ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIPYAERVL 503
                   +  F   ++  L+   E   +  NL+ +  SA+G++      A         
Sbjct: 484 AVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFY 543

Query: 504 -----ELLKIFMVLTNDEDLRSRARATELLG---LVAESVGRARMEPILPPFVEAAISGF 555
                +L +   VL        +    EL      V E++ R R   I    VE  +   
Sbjct: 544 DYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED--VEDQLMEL 601

Query: 556 GLEFSELREYTHGF------FSNIAGVLEDGFAQYLPLVVPLAFSSCNLDD 600
            +   E  + T  F       S ++  LE+ F QY    +P    + N  D
Sbjct: 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTD 652

Length = 858
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 992
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG18241233 consensus TATA-binding protein-interacting protein 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.97
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.97
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.96
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.96
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.95
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.94
COG5656970 SXM1 Importin, protein involved in nuclear import 99.93
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.93
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.92
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.9
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.9
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.87
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.86
COG51011053 CRM1 Importin beta-related nuclear transport recep 99.85
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.83
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.79
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.77
KOG1242569 consensus Protein containing adaptin N-terminal re 99.76
KOG1242569 consensus Protein containing adaptin N-terminal re 99.74
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 99.7
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.69
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.69
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.68
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.62
PTZ00429746 beta-adaptin; Provisional 99.62
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.62
PTZ00429746 beta-adaptin; Provisional 99.62
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.61
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.59
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 99.58
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.55
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.52
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.51
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.48
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.47
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.38
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.38
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.37
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.36
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.28
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.24
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.23
PRK09687280 putative lyase; Provisional 99.22
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.2
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.19
PRK09687280 putative lyase; Provisional 99.18
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.15
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.13
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.1
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.08
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 99.07
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 99.06
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.04
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.02
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.02
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.01
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 98.99
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.99
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.92
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.91
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.91
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.87
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.86
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.82
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.8
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.79
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.79
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.78
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.76
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.74
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.71
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.7
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.65
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.65
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.64
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.61
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.6
KOG04141251 consensus Chromosome condensation complex Condensi 98.59
PF05804708 KAP: Kinesin-associated protein (KAP) 98.49
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.46
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.44
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.41
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.39
KOG2956516 consensus CLIP-associating protein [General functi 98.38
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.36
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.35
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 98.29
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 98.28
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.27
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.27
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.23
KOG01681051 consensus Putative ubiquitin fusion degradation pr 98.23
KOG2956516 consensus CLIP-associating protein [General functi 98.21
KOG45241014 consensus Uncharacterized conserved protein [Funct 98.21
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.21
KOG0414 1251 consensus Chromosome condensation complex Condensi 98.19
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.18
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 98.18
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.17
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.15
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.14
COG5656970 SXM1 Importin, protein involved in nuclear import 98.11
KOG4413524 consensus 26S proteasome regulatory complex, subun 98.11
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.1
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 98.07
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 98.06
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.06
KOG1293678 consensus Proteins containing armadillo/beta-caten 98.06
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.05
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 98.03
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.02
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.02
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 98.01
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.97
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.91
PF04510174 DUF577: Family of unknown function (DUF577); Inter 97.91
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.9
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.9
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.89
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.87
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.86
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.82
PF05004309 IFRD: Interferon-related developmental regulator ( 97.77
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.75
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.75
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.74
PF05004309 IFRD: Interferon-related developmental regulator ( 97.73
PF05804708 KAP: Kinesin-associated protein (KAP) 97.72
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 97.7
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.69
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.66
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.63
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.63
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.62
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.62
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.59
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.58
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.57
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.55
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.48
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.48
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.48
KOG0413 1529 consensus Uncharacterized conserved protein relate 97.47
KOG2062929 consensus 26S proteasome regulatory complex, subun 97.45
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.43
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.42
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.39
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.36
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.32
PF05536543 Neurochondrin: Neurochondrin 97.31
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.29
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.26
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.26
KOG45241014 consensus Uncharacterized conserved protein [Funct 97.25
KOG2025892 consensus Chromosome condensation complex Condensi 97.25
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.25
TIGR02270410 conserved hypothetical protein. Members are found 97.21
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.2
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.2
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 97.19
KOG18511710 consensus Uncharacterized conserved protein [Funct 97.19
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 97.19
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.18
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 97.16
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.13
KOG2025 892 consensus Chromosome condensation complex Condensi 97.09
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.01
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.97
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 96.94
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.91
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.82
TIGR02270410 conserved hypothetical protein. Members are found 96.77
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.74
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.72
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.69
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.67
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.63
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.63
KOG2062929 consensus 26S proteasome regulatory complex, subun 96.58
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 96.55
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.51
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.46
PF05536543 Neurochondrin: Neurochondrin 96.44
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.38
COG5116926 RPN2 26S proteasome regulatory complex component [ 96.37
KOG2549576 consensus Transcription initiation factor TFIID, s 96.32
KOG2137700 consensus Protein kinase [Signal transduction mech 96.26
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.26
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.23
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.15
KOG1048717 consensus Neural adherens junction protein Plakoph 96.09
KOG15171387 consensus Guanine nucleotide binding protein MIP1 96.05
KOG2149393 consensus Uncharacterized conserved protein [Funct 96.04
KOG0567289 consensus HEAT repeat-containing protein [General 96.01
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.96
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 95.95
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.94
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.78
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 95.76
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 95.75
PF1036392 DUF2435: Protein of unknown function (DUF2435) 95.74
KOG1243690 consensus Protein kinase [General function predict 95.74
KOG18371621 consensus Uncharacterized conserved protein [Funct 95.71
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.67
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 95.64
KOG1243690 consensus Protein kinase [General function predict 95.56
COG5218885 YCG1 Chromosome condensation complex Condensin, su 95.53
KOG2149393 consensus Uncharacterized conserved protein [Funct 95.36
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 95.26
KOG3687 1697 consensus Tuberin - Rap/ran-GTPase-activating prot 95.19
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.98
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.95
KOG18371621 consensus Uncharacterized conserved protein [Funct 94.93
KOG2137700 consensus Protein kinase [Signal transduction mech 94.91
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.87
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 94.86
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.83
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 94.65
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 94.53
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.43
KOG3961262 consensus Uncharacterized conserved protein [Funct 94.33
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 94.3
COG50981128 Chromosome condensation complex Condensin, subunit 94.11
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.08
KOG2549576 consensus Transcription initiation factor TFIID, s 93.89
KOG0567289 consensus HEAT repeat-containing protein [General 93.84
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 93.72
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 93.71
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 93.69
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.51
PF14222552 MOR2-PAG1_N: Cell morphogenesis N-terminal 93.5
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 93.26
KOG4199461 consensus Uncharacterized conserved protein [Funct 93.25
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 93.15
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 93.08
PF12726727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 93.05
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 92.93
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 92.92
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 92.86
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.85
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 92.78
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 92.57
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 92.55
KOG4199461 consensus Uncharacterized conserved protein [Funct 92.21
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 92.06
KOG0413 1529 consensus Uncharacterized conserved protein relate 91.87
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 91.59
smart00638574 LPD_N Lipoprotein N-terminal Domain. 91.53
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 91.4
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 91.31
cd03561133 VHS VHS domain family; The VHS domain is present i 91.03
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 91.02
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 90.94
KOG3961262 consensus Uncharacterized conserved protein [Funct 90.84
KOG19491005 consensus Uncharacterized conserved protein [Funct 90.43
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 90.26
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 90.19
KOG18481610 consensus Uncharacterized conserved protein [Funct 90.18
KOG3036293 consensus Protein involved in cell differentiation 89.99
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 89.93
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 89.49
COG5234993 CIN1 Beta-tubulin folding cofactor D [Posttranslat 89.24
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 89.2
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 89.18
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 89.07
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 89.07
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 88.85
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 88.46
cd03561133 VHS VHS domain family; The VHS domain is present i 88.32
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 88.16
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 87.85
PF08146153 BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295 87.66
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 86.85
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 86.72
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 86.6
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 86.55
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 86.37
PF14868559 DUF4487: Domain of unknown function (DUF4487) 86.34
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 85.73
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 85.64
KOG2256661 consensus Predicted protein involved in nuclear ex 85.34
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 85.25
PF11701157 UNC45-central: Myosin-binding striated muscle asse 84.53
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 84.44
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 84.42
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 84.37
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 84.19
PF11701157 UNC45-central: Myosin-binding striated muscle asse 84.07
KOG2081559 consensus Nuclear transport regulator [Intracellul 83.79
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 83.73
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 83.66
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 83.54
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 83.51
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 83.22
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 82.88
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 81.88
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 80.9
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 80.3
KOG2038988 consensus CAATT-binding transcription factor/60S r 80.28
PF11707330 Npa1: Ribosome 60S biogenesis N-terminal; InterPro 80.04
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-117  Score=963.44  Aligned_cols=976  Identities=36%  Similarity=0.585  Sum_probs=862.9

Q ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHHH
Q 001945            2 AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVKQ   81 (992)
Q Consensus         2 ~~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~~   81 (992)
                      .+.+.++++.+.||||++|++||+.|+.....+...+.|.+++.+++++++|++|++++||.+.++|+.++.+.++.||.
T Consensus         3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks   82 (1075)
T KOG2171|consen    3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS   82 (1075)
T ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            57899999999999999999999999877666568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcccccHHHHH
Q 001945           82 SLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTFRPHFADMQ  161 (992)
Q Consensus        82 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~i~  161 (992)
                      .++..+.+|+.+.||+++|++++.+++.++|+ .||+++++++++.+|+++..|+.|+.+|..+.+.++..+.+|+..+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            99999999999999999999999999999997 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHhhcccC-ChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcCCccc
Q 001945          162 ALLLKCLQDETSNRVRIAALKAIGSFLEFTN-DGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIESPAPL  240 (992)
Q Consensus       162 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~~~~~~  240 (992)
                      +++.+++++ ++..||..|+++++.++.+.+ ++.....+..++|.++..+...++.++.+....++++|.++++..|++
T Consensus       162 ~lf~q~~~d-~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~  240 (1075)
T KOG2171|consen  162 RLFSQTMTD-PSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL  240 (1075)
T ss_pred             HHHHHhccC-CcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence            999999999 444499999999999999984 456788899999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhc-CChHHHHHHHhhhhccCCCC---------CCC
Q 001945          241 LGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKH-KLVIPILQVMCPLLAESNEA---------GED  310 (992)
Q Consensus       241 ~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~~~~il~~l~~~l~~~~~~---------~~d  310 (992)
                      +++++..+++++++++.|++.++.+|..|++++.+++++.|.+.++. .+..++++.++..|++.++|         |+|
T Consensus       241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded  320 (1075)
T KOG2171|consen  241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED  320 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence            99999999999999999999999999999999999999988888764 46778999999998876544         223


Q ss_pred             CCCchHHHHHHHHHHHHHHcc-hhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCC
Q 001945          311 DDLAPDRAAAEVIDTMALNLA-KHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRD  389 (992)
Q Consensus       311 ~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d  389 (992)
                      ++..+...|.+++++++.++| +.++|++++.+...+.|++|+.|+||+++++.+++||.+.+..+++.|++.+++.++|
T Consensus       321 ~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D  400 (1075)
T KOG2171|consen  321 DEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND  400 (1075)
T ss_pred             cccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC
Confidence            335688899999999999999 8899999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhHhhhcHHHHhhhh-hHHHHHHHhcccC-ChHHHHHHHHHHHHHHHhhc-cccccchHHHHH-HH
Q 001945          390 PEQFVRGAASFALGQFAEYLQPEIVSHYE-SVLPCILNALEDE-SDEVKEKSYYALAAFCEDMG-EEILPFLDPLMG-KL  465 (992)
Q Consensus       390 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~ll~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~l~~-~l  465 (992)
                      +||+||++|+.++|+++..+.+.++.+++ .+.|.++..+.++ +++|+.+|+.++.++.+.++ +.+.||++.+++ .+
T Consensus       401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l  480 (1075)
T KOG2171|consen  401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKL  480 (1075)
T ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988764 5556778888776 47999999999999999985 457899999999 56


Q ss_pred             HHHhcCCCHhHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHhccChhh-hHhHHHHHHHHHHHHHhhchhhccCCh
Q 001945          466 LAALENSPRNLQETCMSAIGSVAAAAEQAFIPYAERVLELLKIFMVLTNDED-LRSRARATELLGLVAESVGRARMEPIL  544 (992)
Q Consensus       466 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~  544 (992)
                      ..+++++.+.+++.++.+|++++.++++.|.|||+.+||.|++++.+.++++ ..+|+++++|++.++.++|++.|.|+.
T Consensus       481 ~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a  560 (1075)
T KOG2171|consen  481 LLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA  560 (1075)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH
Confidence            6666777899999999999999999999999999999999999999877554 457999999999999999999999999


Q ss_pred             HHHHHHHHhc---cCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCC
Q 001945          545 PPFVEAAISG---FGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVS  621 (992)
Q Consensus       545 ~~i~~~l~~~---l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  621 (992)
                      .++++.+...   ..+++...|++.+.+|++||+++|++|.||+|.++|.++..++.+++... +++++.+..+...+|.
T Consensus       561 ~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~-~d~~d~e~~~~~~~~e  639 (1075)
T KOG2171|consen  561 EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL-SDEEDEEEEQDLDGWE  639 (1075)
T ss_pred             HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-cCchhhhhccccccch
Confidence            9999999886   34557789999999999999999999999999999999999988765432 2344444443344432


Q ss_pred             CCchhhhhcccc-ceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHh-cccCCChhHHHHHHHHHHHHHHH
Q 001945          622 SDDEAHCERSVR-NISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVR-HASYFHEDVRYQAVFALKNILTA  699 (992)
Q Consensus       622 ~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~vr~~a~~~l~~l~~~  699 (992)
                      ..     +...+ .++++|+.+++|..|+.+|+.++..++..|.||++++.+..+. +..+++++||.+|+++++.++.+
T Consensus       640 ~~-----~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~  714 (1075)
T KOG2171|consen  640 VV-----ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTC  714 (1075)
T ss_pred             hh-----ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            11     11112 6899999999999999999999999999999999999994444 45579999999999999999999


Q ss_pred             HHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHHHhhh-hh
Q 001945          700 AHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAV-EPYMSRLVDATLLLLREE-ST  777 (992)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~l~~~l~~~l~~~-~~  777 (992)
                      ...+.   ..+|..++..+..+++.+...+..|+++++...++++++++++.+|+.++ .+....+...+...+... ..
T Consensus       715 ~~~A~---~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~  791 (1075)
T KOG2171|consen  715 ALKAC---QGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKR  791 (1075)
T ss_pred             HHHHh---ccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            87655   34677899999999999999999999999999999999999999997765 445666555555443322 22


Q ss_pred             hcCC-C----CCCCC-CCcccccchHHHHHHHHhHHHHHHHHhCCChHHHHHHHHHHHHHhhcCCCCccchhhHHHHHHH
Q 001945          778 CQQP-D----NDSDI-EDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIFAKLFDPLMKFAKSSRPLQDRTMVVATLAE  851 (992)
Q Consensus       778 ~~~~-~----~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~r~~al~~l~~  851 (992)
                      ++.. +    +++|. ++++.++.+..+++.+.+.+..+++..|+.|.+.|..++|.+.+.+.++.+.. |.+|++++++
T Consensus       792 ~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d  870 (1075)
T KOG2171|consen  792 MQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDD  870 (1075)
T ss_pred             HHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHH
Confidence            2211 1    11111 11222356677899999999999999999999999999999999999888876 9999999999


Q ss_pred             HHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCC----CCCChhhHh
Q 001945          852 VARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGD----SEPDDAVRD  927 (992)
Q Consensus       852 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~----~~~~~~~~~  927 (992)
                      +++++|+...+|...++|.++..+.+.+++||++|+|++|.+++++|+.+.+.....++.|...+..    .+++..+++
T Consensus       871 ~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ate  950 (1075)
T KOG2171|consen  871 LIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATE  950 (1075)
T ss_pred             HHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHH
Confidence            9999999999999999999999999999999999999999999999998777666666666666554    367789999


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCcccccCCC
Q 001945          928 NAAGAVARMIMVNPQSIPLNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQRN  989 (992)
Q Consensus       928 n~~~~l~~l~~~~~~~~~~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~  989 (992)
                      |+++|++|++.++|..+++++++|.|+++||...|.||+..+|++||.|+++|||.|+|.+|
T Consensus       951 Na~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen  951 NAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred             HHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999885

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins [] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription] Back     alignment and domain information
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query992
2bpt_A861 Structure Of The Nup1p:kap95p Complex Length = 861 1e-16
3nd2_A861 Structure Of Yeast Importin-Beta (Kap95p) Length = 2e-16
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 1e-12
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 5e-11
2p8q_A876 Crystal Structure Of Human Importin Beta Bound To T 1e-10
1qgk_A876 Structure Of Importin Beta Bound To The Ibb Domain 2e-10
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 3e-10
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 4e-10
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 1e-09
1ukl_A876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 1e-09
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 2e-08
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 4e-06
2qna_A762 Crystal Structure Of Human Importin-Beta (127-876) 3e-05
1qbk_B890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 8e-05
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure 
Iteration: 1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 126/576 (21%), Positives = 227/576 (39%), Gaps = 94/576 (16%)
Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKDP--QVVPALVQHLRTAKTP-NVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63
Query: 59  LLRKKITG-----------HW-AKLSPQLKQLVK-QSLIESITLEHSAPVRRASANVVSI 105
            L+ ++              W  ++SP+ K  +K  +L   +++E       A       
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIA 123
Query: 106 IAKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALL 164
             +  +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L
Sbjct: 124 DIE--LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181
Query: 165 LKCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEE 220
           +  +Q     ETS  VR+AAL A+   L F  +  E    R ++  ++     C A+  E
Sbjct: 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV-----CEATQAE 236
Query: 221 DVAV--IAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISW--- 275
           D+ V   AF    +++      +   ++  + ++L +++  +  PN +  ++ +  W   
Sbjct: 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKS--PNDKVASMTVEFWSTI 293
Query: 276 ----------LAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAE 321
                     LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A  
Sbjct: 294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 322 VIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLH 381
            +   A N   H+  PV EF   +    + + REAAV A G I +G              
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG-------------- 399
Query: 382 IVLGALRDPEQFVRGAASFALGQFAEYLQPEIVSHYESVLPCILNALEDESDEVKEKSYY 441
                   P++  R                    +    LP ILN + D+S +VKE + +
Sbjct: 400 --------PDKVQR------------------TYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 442 ALAAFCEDMGEEILP--FLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFIPYA 499
            +    + + E I P   L  ++   L  L++ P+       + I  V   AE    P  
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 500 ERVLELLKIFMVLTN--DEDLRSRARATELLGLVAE 533
                L+   +   N  D +  +RA A   L  + E
Sbjct: 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query992
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 1e-123
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 9e-23
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 2e-09
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-117
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-48
1qgr_A876 Protein (importin beta subunit); transport recepto 1e-103
1qgr_A876 Protein (importin beta subunit); transport recepto 6e-23
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-09
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-41
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-34
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-24
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-15
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-30
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-21
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-21
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 1e-10
2x19_B963 Importin-13; nuclear transport, protein transport; 1e-27
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 8e-22
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 9e-05
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-18
2x1g_F971 Cadmus; transport protein, developmental protein, 1e-15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 7e-15
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-10
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-04
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 1e-14
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 6e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 3e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 4e-05
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 2e-07
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 1e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 4e-07
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 1e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 2e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-06
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 6e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-04
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-06
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-06
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 5e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 8e-06
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 2e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 4e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-05
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 3e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-04
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-05
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 2e-04
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 2e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 7e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  395 bits (1015), Expect = e-123
 Identities = 150/830 (18%), Positives = 312/830 (37%), Gaps = 77/830 (9%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKT-PNVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGH------------WAKLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++                 ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQEEH-REVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E+ +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKY 281
           V   AF    +++      +   ++  + ++L +++  +         ++  S + + + 
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 282 NSLKKHKLVIP---------------ILQVMCPLLAESNEAGEDDDLAPDRAAAEVIDTM 326
           +   +                     ++  +  LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKEKSYYAL 443
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D   +V     + +
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTI 477

Query: 444 AAFCEDMGEE----ILPFLDPLMGKLLAALE--NSPRNLQETCMSAIGSVAAAAEQAFIP 497
               E + E     I  F   L+  L+ A    ++  N + +  SA+ ++   A      
Sbjct: 478 INLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAE 537

Query: 498 YAERVLELLKIFM---------VLTNDEDLRSRARATELLGLVAESVGR--ARMEPILPP 546
            +  +   +   +          LT ++    +   + +L ++A  + +  + +EP+   
Sbjct: 538 TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM 597

Query: 547 FVEAAISGFGL-EFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDG---- 601
            +          + + + +      S +A  L  GF +YL    P    + N  D     
Sbjct: 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSI 657

Query: 602 SAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKS 661
           +AV        ++          +A      + IS      + K A     G  A +  +
Sbjct: 658 TAVGFIADISNSL--EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715

Query: 662 SYAPFLEESLKILVRHASYFHEDVRYQAVFALKN----ILTAAHAIFQSHNEGPAKAREI 717
            + P+L + + + V   +   E+   +A+         +L A   I    ++ P      
Sbjct: 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPY 775

Query: 718 LDTVMNIFIRTMTEDDDK----DVVAQACTSIVEIINDYGYMAVEPYMSR 763
           + T+   FI  + ED            A   I +I   +   +++ +  +
Sbjct: 776 VGTIFQ-FIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQ 824
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query992
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.96
2x1g_F971 Cadmus; transport protein, developmental protein, 99.92
2x19_B963 Importin-13; nuclear transport, protein transport; 99.9
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.89
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.87
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.83
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.82
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.82
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.82
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.82
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.79
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.78
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.78
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.77
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.77
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.77
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.74
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.73
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.73
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.73
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.71
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.71
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.67
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.67
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.66
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.63
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.63
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.63
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.63
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.62
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.59
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.59
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.59
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.59
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.58
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.5
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.49
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.31
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.28
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.27
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.26
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.24
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.22
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.2
3nmz_A458 APC variant protein; protein-protein complex, arma 99.19
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.17
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.16
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.14
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.14
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.14
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.12
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.02
3nmz_A458 APC variant protein; protein-protein complex, arma 99.01
2db0_A253 253AA long hypothetical protein; heat repeats, hel 99.0
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.99
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.99
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.98
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.94
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.9
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.89
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 98.79
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.72
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.7
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.69
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.69
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.58
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.57
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.55
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.53
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.52
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.51
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.47
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.45
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.39
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.31
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.31
3grl_A651 General vesicular transport factor P115; vesicle t 98.3
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 98.17
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.08
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 98.01
3grl_A651 General vesicular transport factor P115; vesicle t 97.88
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.86
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 97.85
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.67
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.65
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 97.42
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.41
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.4
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.13
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.06
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.74
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.62
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 96.02
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.97
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.77
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.62
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.45
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 95.43
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.4
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 95.02
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 94.0
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 92.88
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 92.51
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 92.17
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 92.08
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.29
3g2s_A149 C-terminal fragment of sortilin-related receptor; 90.4
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 90.11
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 90.1
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 90.08
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 89.86
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.99
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 88.95
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 88.9
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 87.38
3g2s_A149 C-terminal fragment of sortilin-related receptor; 87.24
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 84.78
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 84.0
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 83.93
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 83.67
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 83.64
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 83.49
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 83.33
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 83.12
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 81.89
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 80.44
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 80.19
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=2.7e-61  Score=585.76  Aligned_cols=752  Identities=18%  Similarity=0.272  Sum_probs=614.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHh--cCCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945            3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLR--TAKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK   80 (992)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~--~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~   80 (992)
                      +++.++|+.++|||+++|++|+++|++++++|++...|..++.  ++.++.+|++|+++||+.+.++|..++++.+..||
T Consensus        13 ~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik   92 (852)
T 4fdd_A           13 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK   92 (852)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence            5788899999999999999999999999999999999999998  46789999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhcc-----cc
Q 001945           81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQTF-----RP  155 (992)
Q Consensus        81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~~-----~~  155 (992)
                      +.+++.|. ++++.+|+.++.+++.+++.+++ +.||++++.+.+.++++++..+++++.+++.+++..++.+     ..
T Consensus        93 ~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~  170 (852)
T 4fdd_A           93 SECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR  170 (852)
T ss_dssp             HHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSS
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcc
Confidence            99999988 68899999999999999998866 5999999999999999999999999999999998877543     34


Q ss_pred             cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945          156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE  235 (992)
Q Consensus       156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~  235 (992)
                      .++.+++.+.+++++ +++.||..|++++..++...+.     .+...++.+++.+...+.+++++++..++++|..+++
T Consensus       171 ~~~~il~~l~~~l~~-~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~  244 (852)
T 4fdd_A          171 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLE  244 (852)
T ss_dssp             CHHHHHHHHTTTTTC-SSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            478899999999998 9999999999999988765421     2445567777777777888899999999999999999


Q ss_pred             CCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhc-----------cC
Q 001945          236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLA-----------ES  304 (992)
Q Consensus       236 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~-----------~~  304 (992)
                      ..+..+.++++.+++.++....+.  ++++|..++++|..+++.....-.-.+++..+++.+++.|.           +.
T Consensus       245 ~~~~~~~~~l~~l~~~l~~~~~~~--~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~  322 (852)
T 4fdd_A          245 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  322 (852)
T ss_dssp             HCHHHHGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--
T ss_pred             hCHHHHHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCc
Confidence            999999999999999999888765  78999999999999886421111113478889999988884           21


Q ss_pred             CCCCCC----CCCchHHHHHHHHHHHHHHcchhchHHHHHHHHhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHH
Q 001945          305 NEAGED----DDLAPDRAAAEVIDTMALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVL  380 (992)
Q Consensus       305 ~~~~~d----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~  380 (992)
                      ++|+++    ++|.+|.++..+++.++...|+.+++.+++.+.+.+++++|+.|++|+.+++.+++++.+.+.++++.++
T Consensus       323 ~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l  402 (852)
T 4fdd_A          323 EGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELI  402 (852)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHH
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            122222    5689999999999999999998899999999999999999999999999999999999988888999999


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHHHHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchH
Q 001945          381 HIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVLPCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLD  459 (992)
Q Consensus       381 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~  459 (992)
                      +.++..++|+++.||.+|+++++++++.+++. ...++..+++.++..+.++++.||..|++++..+++.++..+.||++
T Consensus       403 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~  482 (852)
T 4fdd_A          403 PHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA  482 (852)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence            99999999999999999999999999987542 34577899999999999999999999999999999999888999999


Q ss_pred             HHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc--ccHHHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhch
Q 001945          460 PLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYAERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGR  537 (992)
Q Consensus       460 ~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~  537 (992)
                      .+++.|...++..+......++++++.++...+..+.  +|++.++|.+.+.+..                         
T Consensus       483 ~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~-------------------------  537 (852)
T 4fdd_A          483 YILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM-------------------------  537 (852)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH-------------------------
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHh-------------------------
Confidence            9999999999888777777888999999887776543  2555555544332211                         


Q ss_pred             hhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHcccCccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccC
Q 001945          538 ARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGF  617 (992)
Q Consensus       538 ~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  617 (992)
                                       +.++++.++                                                      
T Consensus       538 -----------------l~d~~~~~~------------------------------------------------------  546 (852)
T 4fdd_A          538 -----------------LKDEDKDLF------------------------------------------------------  546 (852)
T ss_dssp             -----------------SCTTCTTHH------------------------------------------------------
T ss_pred             -----------------cccccHHHH------------------------------------------------------
Confidence                             111111111                                                      


Q ss_pred             CCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 001945          618 GGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNIL  697 (992)
Q Consensus       618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~  697 (992)
                                                   .++++++.++...|..+.||++++++.++..+.                  
T Consensus       547 -----------------------------~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~------------------  579 (852)
T 4fdd_A          547 -----------------------------PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQ------------------  579 (852)
T ss_dssp             -----------------------------HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH------------------
T ss_pred             -----------------------------HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH------------------
Confidence                                         223333333334444444455443322111000                  


Q ss_pred             HHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhh
Q 001945          698 TAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREEST  777 (992)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~  777 (992)
                       .                 .       +.+        .           ......+.                   .. 
T Consensus       580 -~-----------------~-------l~~--------~-----------~~~~~~~~-------------------~~-  595 (852)
T 4fdd_A          580 -K-----------------T-------LAQ--------A-----------MLNNAQPD-------------------QY-  595 (852)
T ss_dssp             -H-----------------H-------HHH--------H-----------HHHHHCTT-------------------TS-
T ss_pred             -H-----------------H-------HHH--------H-----------HHhhcCCc-------------------cc-
Confidence             0                 0       000        0           00000000                   00 


Q ss_pred             hcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChHHHH--HHHHHHHHHhhcCCCCccchhhHHHHHHHHHhh
Q 001945          778 CQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFAPIF--AKLFDPLMKFAKSSRPLQDRTMVVATLAEVARD  855 (992)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~  855 (992)
                                     .+.+..++.++.++++.+++.+|+.+.+|+  ..+++.++..+++..+ .+|..++.+++++++.
T Consensus       596 ---------------~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~  659 (852)
T 4fdd_A          596 ---------------EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKA  659 (852)
T ss_dssp             ---------------CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHH
Confidence                           000112344567888899999999999998  6899999999987654 6899999999999999


Q ss_pred             cCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhcCcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHH
Q 001945          856 MGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNGGESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVAR  935 (992)
Q Consensus       856 ~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~  935 (992)
                      ++....+|++.++|.+.+.+.+.++++|.+|++++|.++...++.+.||+..+++.|.+++..++....+++|++.++|+
T Consensus       660 ~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igr  739 (852)
T 4fdd_A          660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR  739 (852)
T ss_dssp             CGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHH
Confidence            99999999999999999999988999999999999999999999999999999999999998776677899999999999


Q ss_pred             HHHhCCCCC-C-hhhHHHHHHhhCCCCCcHHhhHHHHHHHHHHHhhcCcccccC
Q 001945          936 MIMVNPQSI-P-LNQVLPVLLKVLPLKEDFEESMAVYNCISTLVLSSNPQLFHQ  987 (992)
Q Consensus       936 l~~~~~~~~-~-~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~  987 (992)
                      +...+|+.+ | ++++++.|++.||..+|.+|...++++||.++..||+.+++.
T Consensus       740 l~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~  793 (852)
T 4fdd_A          740 LGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD  793 (852)
T ss_dssp             HHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred             HHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHH
Confidence            999998876 4 899999999999999999999999999999999999987654
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 992
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-70
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-16
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 1e-65
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-64
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-41
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-21
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 3e-52
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 1e-46
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 4e-09
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-04
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-29
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 8e-13
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-12
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-09
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-17
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-16
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-15
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-09
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-08
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 8e-07
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 9e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 7e-04
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 0.002
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  250 bits (637), Expect = 1e-70
 Identities = 151/834 (18%), Positives = 304/834 (36%), Gaps = 71/834 (8%)

Query: 2   AQSLELLLIQFLMPDNDARRQAEDQIKRLAKD--PQVVPALVQHLRTAKTP-NVRQLAAV 58
           A+  +LL    L PD + R  +E Q+K+L+ D   Q      Q L    T    R LAA+
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAAL 63

Query: 59  LLRKKITGHWA------------KLSPQLKQLVKQSLIESITLEHSAPVRRASANVVSII 106
            L+ ++    +            ++SP+ K  +K + + ++ +     +  A+A +++ I
Sbjct: 64  TLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAI 122

Query: 107 AKYAVPAGEWPDLLPFLFQFSQSEQ-EEHREVALILFSSLTETIGQTFRPHFADMQALLL 165
           A   +P G WP+L+  +   + +EQ E  +  +L+    + E+     +   +    +L+
Sbjct: 123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI 182

Query: 166 KCLQ----DETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEED 221
             +Q     ETS  VR+AAL A+   L F  +  E          ++ V  +   + + +
Sbjct: 183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNME---REGERNYLMQVVCEATQAEDIE 239

Query: 222 VAVIAFEIFDELIESPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIIS------- 274
           V   AF    +++      +   ++  + ++L +++  +         ++  S       
Sbjct: 240 VQAAAFGCLCKIMSKYYTFMKPYMEQAL-YALTIATMKSPNDKVASMTVEFWSTICEEEI 298

Query: 275 ----WLAKYKYNSLKKHKLVIPILQVMCP----LLAESNEAGEDDDLAPDRAAAEVIDTM 326
                LA++  + L+ +   +  ++ + P    LL   NE  EDDD     +A   +   
Sbjct: 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358

Query: 327 ALNLAKHVFPPVFEFASVSCQNASPKYREAAVTAIGIISEGCAEWMKEK-LESVLHIVLG 385
           A N   H+  PV EF   +    + + REAAV A G I +G  +  +   +   L  +L 
Sbjct: 359 AQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILN 418

Query: 386 ALRDPEQFVRGAASFALGQFAEYLQPEIVS--HYESVLPCILNALEDESDEVKE---KSY 440
            + D    V+   ++ +G+ A+ +   I    H   V+   L  L+D             
Sbjct: 419 LMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII 478

Query: 441 YALAAFCEDMGEEILPFLDPLMGKLLAALENSPR--NLQETCMSAIGSVAAAAEQAFIPY 498
             +    E     I  F   L+  L+ A        N + +  SA+ ++   A       
Sbjct: 479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538

Query: 499 AERVLELLKIFMVLTNDEDLRS-----RARATELLGLVAE--SVGRARMEPILPPFVEAA 551
           +  +   +   +  T   D             EL   +    +    +    + P  +  
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598

Query: 552 ISGFGLEF-----SELREYTHGFFSNIAGVLEDGFAQYLPLVVPLAFSSCNLDDGS--AV 604
           +  F         + + +      S +A  L  GF +YL    P    + N  D      
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSIT 658

Query: 605 DIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHTKSSYA 664
            +    D + +         +A      + IS      + K A     G  A +  + + 
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718

Query: 665 PFLEESLKILVRHASYFHEDVRYQAVFAL----KNILTAAHAIFQSHNEGPAKAREILDT 720
           P+L + + + V   +   E+   +A+       + +L A   I    ++ P      + T
Sbjct: 719 PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGT 778

Query: 721 VMNIFIRTMTED----DDKDVVAQACTSIVEIINDYGYMAVEPYMSRLVDATLL 770
           +   FI  + ED     +      A   I +I   +   +++ +  +      +
Sbjct: 779 IFQ-FIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYI 831
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query992
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.97
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.97
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.95
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.74
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.7
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.7
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.66
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.5
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.48
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.47
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.45
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.35
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.22
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.11
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.73
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.7
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.63
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.55
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.46
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.41
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.29
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.08
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.51
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.37
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.29
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 93.26
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 93.04
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 91.13
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.57
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 89.85
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 89.83
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 89.58
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 88.35
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 86.65
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 85.99
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 83.97
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 81.5
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 80.87
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-59  Score=566.91  Aligned_cols=752  Identities=19%  Similarity=0.274  Sum_probs=588.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHhc--CCChhHHHHHHHHHHHhhhhcccCCCHHHHHHHH
Q 001945            3 QSLELLLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRT--AKTPNVRQLAAVLLRKKITGHWAKLSPQLKQLVK   80 (992)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~l~~~~~~p~~~~~l~~il~~--~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~i~   80 (992)
                      ++|.++|+.++|||+++|++|+++|+++.++|++..+|..++.+  +.+..+|++|+++||+.+.++|..++++.++.||
T Consensus        11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik   90 (888)
T d1qbkb_          11 QQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIK   90 (888)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            57788888889999999999999999999999998888888764  3467899999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHhHHHHHHHHHHHHHcccCCCCCCcchHHHHHHhhcCCCHHHHHHHHHHHHHhhhhhhhc-----ccc
Q 001945           81 QSLIESITLEHSAPVRRASANVVSIIAKYAVPAGEWPDLLPFLFQFSQSEQEEHREVALILFSSLTETIGQT-----FRP  155 (992)
Q Consensus        81 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~al~~l~~l~~~~~~~-----~~~  155 (992)
                      +.+++.|. ++++.+|+.++.+++.+++.+.+ +.||+++|.+.+.+.++++..+++++.+++.+++.....     ...
T Consensus        91 ~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~  168 (888)
T d1qbkb_          91 SECLNNIG-DSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDR  168 (888)
T ss_dssp             HHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---C
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence            99999998 58899999999999999998877 589999999999998888888899999999999875533     233


Q ss_pred             cHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccCChhhHHHHHhhHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhc
Q 001945          156 HFADMQALLLKCLQDETSNRVRIAALKAIGSFLEFTNDGAEVVKFREFIPSILNVSRQCLASGEEDVAVIAFEIFDELIE  235 (992)
Q Consensus       156 ~~~~i~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~l~~l~~  235 (992)
                      ..+.+++.+.+++++ +++.+|..|+.++..++......     +...++.+++.+.....+++++++..++.+|..+++
T Consensus       169 ~~~~ll~~ll~~~~~-~~~~vr~~al~~l~~~~~~~~~~-----~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~  242 (888)
T d1qbkb_         169 PLNIMIPKFLQFFKH-SSPKIRSHAVACVNQFIISRTQA-----LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLE  242 (888)
T ss_dssp             CSTTTTHHHHTGGGS-SSSCSSSTTTHHHHGGGGCCCST-----TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSC
T ss_pred             HHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            445678888999998 88899999999998887665432     223345555556566667788899999999999999


Q ss_pred             CCccchHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHhhHhHhhhcCChHHHHHHHhhhhccC-----------
Q 001945          236 SPAPLLGDSVKSIVHFSLEVSSSHNLEPNTRHQAIQIISWLAKYKYNSLKKHKLVIPILQVMCPLLAES-----------  304 (992)
Q Consensus       236 ~~~~~~~~~l~~li~~~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~~~il~~l~~~l~~~-----------  304 (992)
                      ..+..+.+++..+++.++....++  ++++|..|+++|..+++.......-.++++.+++.+...+...           
T Consensus       243 ~~~~~l~~~l~~i~~~~l~~~~~~--~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~  320 (888)
T d1qbkb_         243 VRMDRLLPHMHNIVEYMLQRTQDQ--DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDV  320 (888)
T ss_dssp             SCTTTTTTTTTTTTTTTTTTTTSS--CHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTS
T ss_pred             HhHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhh
Confidence            989888888888888777665544  7899999999998877532211111123333333322221100           


Q ss_pred             ------------------------------------------CCCCCCCCCchHHHHHHHHHHHHHHcchhchHHHHHHH
Q 001945          305 ------------------------------------------NEAGEDDDLAPDRAAAEVIDTMALNLAKHVFPPVFEFA  342 (992)
Q Consensus       305 ------------------------------------------~~~~~d~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~l  342 (992)
                                                                ++++.+++|+.|+++..+++.++...++.+++.+++.+
T Consensus       321 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l  400 (888)
T d1qbkb_         321 EEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLL  400 (888)
T ss_dssp             SCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHH
Confidence                                                      01112346889999999999999999999999999999


Q ss_pred             HhhhcCCChhhHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHhhcCCCChhHHHHHHHHHHHhHhhhcHH-HHhhhhhHH
Q 001945          343 SVSCQNASPKYREAAVTAIGIISEGCAEWMKEKLESVLHIVLGALRDPEQFVRGAASFALGQFAEYLQPE-IVSHYESVL  421 (992)
Q Consensus       343 ~~~l~~~~~~~r~~al~~l~~i~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~ll  421 (992)
                      .+.+++++|+.|++|+.++|.+++++.+.+.++++.+++.++..++|+++.||.+++|++|++++++.+. ...++..++
T Consensus       401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  480 (888)
T d1qbkb_         401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM  480 (888)
T ss_dssp             HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred             HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999977543 345788999


Q ss_pred             HHHHHhcccCChHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHhcCCCHhHHHHHHHHHHHHHHHhhccCc--ccH
Q 001945          422 PCILNALEDESDEVKEKSYYALAAFCEDMGEEILPFLDPLMGKLLAALENSPRNLQETCMSAIGSVAAAAEQAFI--PYA  499 (992)
Q Consensus       422 ~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~  499 (992)
                      +.++..+.|++++|+..||++|..+++..+..+.||++.+++.+...+...+...+..+++++++++...+..+.  +|+
T Consensus       481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~  560 (888)
T d1qbkb_         481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI  560 (888)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH
Confidence            999999999999999999999999999999999999999999999999998888888999999999988876553  455


Q ss_pred             HHHHHHHHHHHhccChhhhHhHHHHHHHHHHHHHhhchhhccCChHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHccc
Q 001945          500 ERVLELLKIFMVLTNDEDLRSRARATELLGLVAESVGRARMEPILPPFVEAAISGFGLEFSELREYTHGFFSNIAGVLED  579 (992)
Q Consensus       500 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~r~~~~~~~~~i~~~~~~  579 (992)
                      +.+++.+.+......+++..                                           ....+.+++.++..++ 
T Consensus       561 ~~l~~~l~~~~~~~~~~~~~-------------------------------------------~~~~le~l~~i~~~~~-  596 (888)
T d1qbkb_         561 QMLMPPLIQKWNMLKDEDKD-------------------------------------------LFPLLECLSSVATALQ-  596 (888)
T ss_dssp             HHHHHHHHHHHTTSCTTCTT-------------------------------------------HHHHHHHHHHHHHHST-
T ss_pred             HHHHHHHHHHHHhcccchHH-------------------------------------------HHHHHHHHHHHHHHhH-
Confidence            55665554443322111110                                           1111222333322222 


Q ss_pred             CccCchhhhhHHHHhhccCCCCCccCCCCCcchhcccCCCCCCCchhhhhccccceeeecchhhhHHHHHHHHHHHHHHh
Q 001945          580 GFAQYLPLVVPLAFSSCNLDDGSAVDIDGSDDENINGFGGVSSDDEAHCERSVRNISVRTGVLDEKAAATQALGLFALHT  659 (992)
Q Consensus       580 ~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~l~~~~~~~  659 (992)
                                                                                                      
T Consensus       597 --------------------------------------------------------------------------------  596 (888)
T d1qbkb_         597 --------------------------------------------------------------------------------  596 (888)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccchHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHhhCChHHHHH
Q 001945          660 KSSYAPFLEESLKILVRHASYFHEDVRYQAVFALKNILTAAHAIFQSHNEGPAKAREILDTVMNIFIRTMTEDDDKDVVA  739 (992)
Q Consensus       660 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  739 (992)
                       ..+.||.+.+...+...+                  .....                     ..               
T Consensus       597 -~~~~~~~~~~~~~~~~~l------------------~~~l~---------------------~~---------------  621 (888)
T d1qbkb_         597 -SGFLPYCEPVYQRCVNLV------------------QKTLA---------------------QA---------------  621 (888)
T ss_dssp             -TTTHHHHHHHHHHHHHHH------------------HHHHH---------------------HH---------------
T ss_pred             -HHHhhhHHHHHHHHHHHH------------------HHHHH---------------------HH---------------
Confidence             222233322221111000                  00000                     00               


Q ss_pred             HHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCcccccchHHHHHHHHhHHHHHHHHhCCChH
Q 001945          740 QACTSIVEIINDYGYMAVEPYMSRLVDATLLLLREESTCQQPDNDSDIEDDDDTAHDEVIMDAVSDLLPAFAKSMGPHFA  819 (992)
Q Consensus       740 ~~~~~l~~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  819 (992)
                              ......                    ..   ..            ...+..++..+.++++.+++.+|..+.
T Consensus       622 --------~~~~~~--------------------~~---~~------------~~~~~~~~~~~l~~l~~l~~~l~~~~~  658 (888)
T d1qbkb_         622 --------MLNNAQ--------------------PD---QY------------EAPDKDFMIVALDLLSGLAEGLGGNIE  658 (888)
T ss_dssp             --------HHHHHC--------------------TT---TS------------CCCCTHHHHHHHHHHHHHHHHHTTTTH
T ss_pred             --------HHHhcc--------------------cc---cc------------cchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence                    000000                    00   00            001112233455666777777777777


Q ss_pred             HHHH--HHHHHHHHhhcCCCCccchhhHHHHHHHHHhhcCCchhhcHhhhHHHHHHhcCCCChHhHHHHHHHHHHHHhhc
Q 001945          820 PIFA--KLFDPLMKFAKSSRPLQDRTMVVATLAEVARDMGSPIAAYVDRVMPLVLKELASPDAMNRRNAAFCVGELCKNG  897 (992)
Q Consensus       820 ~~~~--~l~~~l~~~l~~~~~~~~r~~al~~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~vr~~a~~~l~~l~~~~  897 (992)
                      +++.  .+++.+...+++.++ .+|..|++++|++++.++....||++.+++.+.+.+.+++.+++++|++++|.++.+.
T Consensus       659 ~~~~~~~l~~~l~~~l~~~~~-~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         659 QLVARSNILTLMYQCMQDKMP-EVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHTSCHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHhhHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            7665  377888888887665 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHHHHHHHhhhhhhCCCCCChhhHhhHHHHHHHHHHhCCCCCC--hhhHHHHHHhhCCCCCcHHhhHHHHHHHHH
Q 001945          898 GESALKYYGDILRGLYPLFGDSEPDDAVRDNAAGAVARMIMVNPQSIP--LNQVLPVLLKVLPLKEDFEESMAVYNCIST  975 (992)
Q Consensus       898 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~n~~~~l~~l~~~~~~~~~--~~~~l~~~l~~lp~~~d~~e~~~~~~~l~~  975 (992)
                      ++.+.||++.+++.|.+++.+++....+++|++.|+|++...+|+.+.  ++++++.|+.+||..+|.+|...+|+++|.
T Consensus       738 ~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~  817 (888)
T d1qbkb_         738 GIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICT  817 (888)
T ss_dssp             GGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Confidence            999999999999999999988777788999999999999999998874  899999999999999999999999999999


Q ss_pred             HHhhcCcccccC
Q 001945          976 LVLSSNPQLFHQ  987 (992)
Q Consensus       976 l~~~~~~~~~~~  987 (992)
                      +++.||+.++++
T Consensus       818 ~i~~~p~~~~~~  829 (888)
T d1qbkb_         818 MISVNPSGVIQD  829 (888)
T ss_dssp             HHHHCGGGTGGG
T ss_pred             HHHHCcHHHHHH
Confidence            999999988753
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure