Citrus Sinensis ID: 001953
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | 2.2.26 [Sep-21-2011] | |||||||
| Q4U2R1 | 4836 | E3 ubiquitin-protein liga | yes | no | 0.378 | 0.077 | 0.350 | 3e-51 | |
| O95714 | 4834 | E3 ubiquitin-protein liga | yes | no | 0.378 | 0.077 | 0.348 | 7e-51 | |
| Q15751 | 4861 | Probable E3 ubiquitin-pro | no | no | 0.351 | 0.071 | 0.361 | 8e-51 | |
| Q9FN03 | 440 | Ultraviolet-B receptor UV | no | no | 0.324 | 0.731 | 0.353 | 4e-47 | |
| Q9VR91 | 4912 | Probable E3 ubiquitin-pro | yes | no | 0.375 | 0.075 | 0.322 | 9e-44 | |
| Q6PAV2 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.319 | 0.299 | 0.321 | 2e-42 | |
| Q5GLZ8 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.319 | 0.299 | 0.318 | 5e-42 | |
| Q5PQN1 | 1057 | Probable E3 ubiquitin-pro | no | no | 0.362 | 0.340 | 0.300 | 6e-42 | |
| Q15034 | 1050 | Probable E3 ubiquitin-pro | no | no | 0.344 | 0.325 | 0.309 | 4e-39 | |
| Q92834 | 1020 | X-linked retinitis pigmen | no | no | 0.311 | 0.302 | 0.308 | 2e-32 |
| >sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 218/422 (51%), Gaps = 47/422 (11%)
Query: 203 VFIWGEGIAN--GFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
VF+WG + G L G + +V P E+ AL+V +A G++ VT
Sbjct: 2962 VFVWGLNDKDQLGGLKGSKIKV------------PSFSETLSALNVVQVAGGSKSLFAVT 3009
Query: 261 KQGEIFSWGEESGGRLGHGREA-DVSHPQLIEILSGVNVELVAC--GEYHTCAVTRSGDL 317
+G+++S GE + GRLG G + V P+ I LS V+ VA G H A+T G +
Sbjct: 3010 VEGKVYSCGEATNGRLGLGMSSGTVPIPRQITALSSYVVKKVAVHSGGRHATALTVDGKV 3069
Query: 318 YTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGD 377
++WG+G + G LGH S+++C PR + L + I+CG H+A +TS+G L+T+G
Sbjct: 3070 FSWGEG--DDGKLGHFSRMNCDKPRLIEA-LKTKRIRDIACGSSHSAALTSSGELYTWGL 3126
Query: 378 GSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVVVATDSSSSSPSGSTSCGK 437
G +G LGHGD+ + P+ V+ L G R +V+CG A + TD G
Sbjct: 3127 GEYGRLGHGDNTTQLKPKMVKVLLGHRVIQVACGS-RDAQTLALTDE-----------GL 3174
Query: 438 LFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAA 497
+F+WGDGD G+LG G E P+ + L + +CQ+ CG S+ALT SG V+T G
Sbjct: 3175 VFSWGDGDFGKLGRGGSEGCNIPQNIERLNGQGVCQIECGAQFSLALTKSGVVWTWGKGD 3234
Query: 498 YGQLG----VPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQL 553
Y +LG V V P V+G + V VA GA H A+T + +VY WG +GQ
Sbjct: 3235 YFRLGHGSDVHVRK---PQVVEGLRGKKIVH-VAVGALHCLAVTDSGQVYAWGDNDHGQQ 3290
Query: 554 GHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDHSVCSSCHNPFGFRR 613
G+G PTLV L+ +++ RV CG + + W ++VD + S H P F+
Sbjct: 3291 GNGTTTVNRKPTLVQGLEGQKITRVACGSSHSV-----AW-TTVDVAT-PSVHEPVLFQT 3343
Query: 614 KR 615
R
Sbjct: 3344 AR 3345
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E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity. Mus musculus (taxid: 10090) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | ||||||
| 359473366 | 1047 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.938 | 0.665 | 0.0 | |
| 255562792 | 1042 | Ran GTPase binding protein, putative [Ri | 0.978 | 0.931 | 0.654 | 0.0 | |
| 449442447 | 982 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.937 | 0.947 | 0.636 | 0.0 | |
| 359479203 | 1107 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.879 | 0.569 | 0.0 | |
| 255572207 | 1100 | Ran GTPase binding protein, putative [Ri | 0.981 | 0.885 | 0.564 | 0.0 | |
| 357493985 | 1124 | Lateral signaling target protein-like pr | 0.985 | 0.870 | 0.566 | 0.0 | |
| 356501403 | 1109 | PREDICTED: uncharacterized protein LOC10 | 0.985 | 0.881 | 0.559 | 0.0 | |
| 356567509 | 1106 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.885 | 0.556 | 0.0 | |
| 356554129 | 1106 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.882 | 0.561 | 0.0 | |
| 224105957 | 1104 | predicted protein [Populus trichocarpa] | 0.976 | 0.877 | 0.552 | 0.0 |
| >gi|359473366|ref|XP_002273996.2| PREDICTED: uncharacterized protein LOC100250008 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1310 bits (3389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/1004 (66%), Positives = 790/1004 (78%), Gaps = 21/1004 (2%)
Query: 1 MLIWYSGKEERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKD 60
MLIWYSGKEE+QLKLN VSRIIPGQRT FQRYPRPEKEYQSFSLIY DRSLDLICKDKD
Sbjct: 49 MLIWYSGKEEKQLKLNNVSRIIPGQRTPIFQRYPRPEKEYQSFSLIYGDRSLDLICKDKD 108
Query: 61 EAEVWLVGLKALITRGTHSKWKLGTINCSTSSDSPRARIRKTSPTVTPFDFGDIQGTQVP 120
EAEVW +GLK LI+RG + KW+ + S SS+SP +R R+ SP+++ D GD Q TQV
Sbjct: 109 EAEVWFIGLKGLISRGNYRKWRSEIRDDSISSESPHSRARRISPSLSSSDPGDTQQTQVT 168
Query: 121 LDNVSNNGLGKAFADIISYTEAANTNSRADSVSFSPSPLTNAFPDNSNDRSSAAETFRIS 180
+N+ +GLGKAF+D+ISYT + + ++A+SV+ S S L++ DNSN R+SA+E FR+S
Sbjct: 169 FENIPQSGLGKAFSDVISYTASTKSFTQAESVASSLSSLSSGGVDNSNGRTSASENFRVS 228
Query: 181 LSSVVSSSSHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVES 240
LSS VSSSS GS H+DFD+LGDVF+WGEGI +G +G G HRVG S S + DALLPKA+ES
Sbjct: 229 LSSAVSSSSQGSGHDDFDALGDVFMWGEGIGDGIMGAGVHRVGSSSSTKIDALLPKALES 288
Query: 241 TMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVEL 300
T+ LDVH+IACG +HAVLVTK+GE+FSWGEE G RLGHG E DVSHP+LI+ L G+N+EL
Sbjct: 289 TVVLDVHSIACGGKHAVLVTKKGEVFSWGEECGSRLGHGVEVDVSHPKLIDALCGMNIEL 348
Query: 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL 360
VACGEYH+CAVT SGDLYTWGDGT+NSGLLGHGS+ S WIP+KVSG ++G+H+SY++CG
Sbjct: 349 VACGEYHSCAVTLSGDLYTWGDGTHNSGLLGHGSEASHWIPKKVSGPMEGMHVSYVACGP 408
Query: 361 WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGVWHTAAVV- 419
WHTAVVTSAG LFTFGDG+FGALGHGDH S SIPREVE LRG RT RV+CGVWHTAAVV
Sbjct: 409 WHTAVVTSAGQLFTFGDGTFGALGHGDHSSMSIPREVEALRGQRTMRVACGVWHTAAVVE 468
Query: 420 VATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHD 479
+ SSS SGS+S GKLFTWGDGDKGRLGHGDKEPRL P+ V LI+E+ CQVACGH+
Sbjct: 469 LMIASSSFESSGSSSSGKLFTWGDGDKGRLGHGDKEPRLVPQSVTALINESFCQVACGHN 528
Query: 480 LSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGAYHVAALTST 539
LSVALTTSG VYTMGSA YGQLG PVADG +PT V+G+IA SFVEEVACG+YHVA LTS
Sbjct: 529 LSVALTTSGRVYTMGSAVYGQLGSPVADGKIPTLVEGKIANSFVEEVACGSYHVAVLTSK 588
Query: 540 SKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHKWVSSVDH 599
++VYTWGKG NGQLGHGD D+RN+PTLVDFLKDKQVK VVCGLNFTA I LHKWVS DH
Sbjct: 589 TEVYTWGKGTNGQLGHGDNDHRNTPTLVDFLKDKQVKNVVCGLNFTAAISLHKWVSCADH 648
Query: 600 SVCSSCHNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVCDDCFTKLKK 659
S+CS CHN FGFRRKRHNCYNCGLVFC CSSRKSLKA+LAP++NKPYRVCDDCFTKLKK
Sbjct: 649 SICSGCHNQFGFRRKRHNCYNCGLVFCNTCSSRKSLKASLAPNMNKPYRVCDDCFTKLKK 708
Query: 660 TDTKLKRTSGYTSVVQSPRNRTGNVNHKTAELADREAQGPRLQDQLSILSSFDSNKQTES 719
SG SV++ P+ R+ N+ K+ E+A+R+ GPR+Q QLS LSS DS + ES
Sbjct: 709 A-----MESG--SVLRIPKARSSNILQKSNEIAERDTMGPRVQGQLSRLSSVDSFSRAES 761
Query: 720 RLSKQNLKLELQDNHVYP-VNKNLQMGRIYSPKSSIFLAKSSKKKFSASASSSRMSSLAT 778
+ K + KLE D V P +N N+Q G +S K S L S+K FSAS SR+ S AT
Sbjct: 762 KHYKCDTKLEFNDARVSPHLNGNVQRGSFHSSKLSNSLFGGSRKIFSASRPGSRIVSRAT 821
Query: 779 SPVSGKSSS------------ARSSAVTIDDSKQMNDSLNQEIIKLRAQVEELTSKSEHL 826
SPVSGKSS RS T DD K NDSL++EII LRAQVE LT KS+ L
Sbjct: 822 SPVSGKSSPPQSAMLAASLAVVRSPEATDDDPKHTNDSLSREIINLRAQVENLTGKSQIL 881
Query: 827 EAELERTSKQLKTVTAIAEDEAEKCKTANEVIKSLTVQLKKMAEKSPEGASPSFTSGSTA 886
EAELER+S++LK VTA+AE EAEKCK A EVIKSLT QLK+MAE+ PE SGS+A
Sbjct: 882 EAELERSSRKLKEVTAVAEGEAEKCKAAKEVIKSLTAQLKEMAERVPEEHISISKSGSSA 941
Query: 887 RHPSGVRTTYSTESHKTNTTAPASESNSNSAQQNLSHGTKVQTERKERMVQAESGVYITL 946
R + +S E+H T+ T+P SESN +S LS GTK QTE+ + +VQ E GVY+TL
Sbjct: 942 RQTPNIVDMFSNENHSTSLTSPESESNGSSVNPILSSGTKAQTEKSDWVVQDEPGVYLTL 1001
Query: 947 STLPGGGNEVKRVRFSRKHFTEQEAEKWWSENGAKICERYNIRS 990
S+L GGGNE++RVRFSRK FTE++AE WW+ENG+K+CER++IRS
Sbjct: 1002 SSLAGGGNELRRVRFSRKRFTEEQAEVWWAENGSKVCERHDIRS 1045
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562792|ref|XP_002522401.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223538286|gb|EEF39893.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449442447|ref|XP_004138993.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101222790 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|359479203|ref|XP_002279847.2| PREDICTED: uncharacterized protein LOC100248282 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255572207|ref|XP_002527043.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223533605|gb|EEF35343.1| Ran GTPase binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|357493985|ref|XP_003617281.1| Lateral signaling target protein-like protein [Medicago truncatula] gi|355518616|gb|AET00240.1| Lateral signaling target protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356501403|ref|XP_003519514.1| PREDICTED: uncharacterized protein LOC100806439 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356567509|ref|XP_003551961.1| PREDICTED: uncharacterized protein LOC100791947 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356554129|ref|XP_003545401.1| PREDICTED: uncharacterized protein LOC100802464 [Glycine max] | Back alignment and taxonomy information |
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| >gi|224105957|ref|XP_002313993.1| predicted protein [Populus trichocarpa] gi|222850401|gb|EEE87948.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 992 | ||||||
| TAIR|locus:505006603 | 1075 | AT5G12350 "AT5G12350" [Arabido | 0.730 | 0.674 | 0.544 | 1.3e-258 | |
| TAIR|locus:2025277 | 1103 | PRAF1 "AT1G76950" [Arabidopsis | 0.703 | 0.632 | 0.491 | 3.5e-218 | |
| TAIR|locus:2079147 | 954 | AT3G47660 "AT3G47660" [Arabido | 0.637 | 0.662 | 0.512 | 1.7e-189 | |
| TAIR|locus:2165770 | 1073 | AT5G42140 "AT5G42140" [Arabido | 0.513 | 0.474 | 0.561 | 9.1e-180 | |
| TAIR|locus:2086253 | 1045 | AT3G23270 "AT3G23270" [Arabido | 0.486 | 0.462 | 0.526 | 1.4e-163 | |
| TAIR|locus:2009739 | 1006 | AT1G65920 [Arabidopsis thalian | 0.636 | 0.627 | 0.425 | 4.2e-145 | |
| UNIPROTKB|E1BW48 | 4841 | HERC2 "Uncharacterized protein | 0.333 | 0.068 | 0.365 | 2.8e-46 | |
| UNIPROTKB|E1C8K2 | 4841 | HERC2 "Uncharacterized protein | 0.333 | 0.068 | 0.365 | 2.8e-46 | |
| RGD|1307989 | 3607 | Herc2 "HECT and RLD domain con | 0.333 | 0.091 | 0.365 | 3.2e-46 | |
| UNIPROTKB|F1M560 | 3643 | Herc2 "Protein Herc2" [Rattus | 0.333 | 0.090 | 0.365 | 3.3e-46 |
| TAIR|locus:505006603 AT5G12350 "AT5G12350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2091 (741.1 bits), Expect = 1.3e-258, Sum P(3) = 1.3e-258
Identities = 407/748 (54%), Positives = 511/748 (68%)
Query: 1 MLIWYSGKEERQLKLNQVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKD 60
+LIW+SG EE+ LKL+ VSRII GQRT FQRYPRPEKEYQSFSLIY++RSLD+ICKDKD
Sbjct: 56 VLIWFSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYSERSLDVICKDKD 115
Query: 61 EAEVWLVGLKALITRGTHSKWKLGTINCSTSSD--SPRARIRKTSPTVTPFDFGD-IQ-- 115
EAEVW GLKALI+ + + + T S+ SPR R++SP +PF D +Q
Sbjct: 116 EAEVWFTGLKALISHCHQRNRRTESRSDGTPSEANSPRTYTRRSSPLHSPFSSNDSLQKD 175
Query: 116 GTQ-----VPLDNVSNNGLGKAFADIISYTEAANTNSRADSVSFSPSPLTNAFPDNSNDR 170
G+ P ++ NGL KAF+D+ Y +DS + S + + + R
Sbjct: 176 GSNHLRIHSPFESPPKNGLDKAFSDMALYAVPPKGFYPSDSATISVHS-GGSDSMHGHMR 234
Query: 171 SSAAETFRIXXXXXXXXXXHGSAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQT 230
+ FR+ HGS H+D D+LGDVFIWGEGI G LGGG RVG SF +
Sbjct: 235 GMGMDAFRVSMSSAVSSSSHGSGHDDGDALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKM 294
Query: 231 DALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEESGGRLGHGREADVSHPQLI 290
D+LLPKA+EST+ LDV NIACG +HAVLVTKQGE FSWGEES GRLGHG ++++ P+LI
Sbjct: 295 DSLLPKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLI 354
Query: 291 EILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDG 350
+ L+ N+ELVACGE+H+CAVT SGDLYTWG G + G+LGHG++VS W+P++V+ L+G
Sbjct: 355 DALNTTNIELVACGEFHSCAVTLSGDLYTWGKGDF--GVLGHGNEVSHWVPKRVNFLLEG 412
Query: 351 IHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSC 410
IH+S I+CG +HTAVVTSAG LFTFGDG+FG LGHGD S IPREV++L+GLRT R +C
Sbjct: 413 IHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAAC 472
Query: 411 GVWHXXXXXXXXXXXXXXXXXXXXCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDEN 470
GVWH GKLFTWGDGDKGRLGHG+KEP+L P CVA L++ N
Sbjct: 473 GVWHTAAVVEVMVGSSSSSNCSS--GKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPN 530
Query: 471 ICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVADGLVPTRVDGEIAESFVEEVACGA 530
CQVACGH L+VALTTSGHVYTMGS YGQLG ADG P RV+G++ +SFVEE+ACGA
Sbjct: 531 FCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGA 590
Query: 531 YHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICL 590
YHVA LTS ++VYTWGKG+NG+LGHGD D+RNSPTLV+ LKDKQVK + CG NFTA +C+
Sbjct: 591 YHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAAVCI 650
Query: 591 HKWXXXXXXXXXXXXXNPFGFRRKRHNCYNCGLVFCKACSSRKSLKAALAPSINKPYRVC 650
H+W PF F+RKRHNCYNCGLVFC +C+S+KSLKA +AP+ NKPYRVC
Sbjct: 651 HRWASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVC 710
Query: 651 DDCFXXXXXXXXXXXXXSGYTSVVQSPRNRTGNVNHKTAELADREAQGPRLQDQLSILSS 710
D CF S ++S+ +R G++N + + + R QL+ S
Sbjct: 711 DKCFNKLKKTMETDP--SSHSSL-----SRRGSINQGSDPIDKDDKFDSRSDGQLARFSL 763
Query: 711 FDSNKQTESRLSKQNLKLELQDNHVYPV 738
+S +Q +SR K+N K E + V P+
Sbjct: 764 MESMRQVDSR-HKKNKKYEFNSSRVSPI 790
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| TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079147 AT3G47660 "AT3G47660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2086253 AT3G23270 "AT3G23270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009739 AT1G65920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00036997001 | SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (1052 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 992 | |||
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 8e-30 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 5e-29 | |
| cd13365 | 115 | cd13365, PH_PLC_plant-like, Plant-like Phospholipa | 2e-27 | |
| pfam08381 | 59 | pfam08381, BRX, Transcription factor regulating ro | 5e-26 | |
| pfam01363 | 68 | pfam01363, FYVE, FYVE zinc finger | 1e-22 | |
| smart00064 | 68 | smart00064, FYVE, Protein present in Fab1, YOTB, V | 2e-21 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 4e-20 | |
| cd00065 | 57 | cd00065, FYVE, FYVE domain; Zinc-binding domain; t | 4e-19 | |
| cd01248 | 108 | cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfm | 7e-16 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 4e-14 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 6e-13 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 6e-12 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 8e-11 | |
| pfam00415 | 50 | pfam00415, RCC1, Regulator of chromosome condensat | 1e-08 | |
| pfam13713 | 39 | pfam13713, BRX_N, Transcription factor BRX N-termi | 3e-08 | |
| COG5184 | 476 | COG5184, ATS1, Alpha-tubulin suppressor and relate | 3e-07 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 2e-06 | |
| cd13363 | 117 | cd13363, PH_PLC_delta, Phospholipase C-delta (PLC- | 2e-06 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 6e-06 | |
| pfam12718 | 143 | pfam12718, Tropomyosin_1, Tropomyosin like | 6e-06 | |
| cd13364 | 108 | cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) | 6e-05 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 2e-04 | |
| pfam13863 | 126 | pfam13863, DUF4200, Domain of unknown function (DU | 0.002 | |
| pfam11559 | 149 | pfam11559, ADIP, Afadin- and alpha -actinin-Bindin | 0.002 | |
| pfam10234 | 269 | pfam10234, Cluap1, Clusterin-associated protein-1 | 0.002 | |
| pfam13540 | 30 | pfam13540, RCC1_2, Regulator of chromosome condens | 0.003 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 8e-30
Identities = 93/421 (22%), Positives = 146/421 (34%), Gaps = 53/421 (12%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
V+ WG N G + + IACG H++ +
Sbjct: 68 ASVYSWGSNGMNELGLGNDETKVDR-PQLNPFGRIDKASII------KIACGGNHSLGLD 120
Query: 261 KQGEIFSWGEESGGRLGHGREAD----------------VSHPQLIEI----LSGVNVEL 300
G ++SWG+ G LG D S P + S + V
Sbjct: 121 HDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVK 180
Query: 301 VACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGL 360
+ACG + +T G +Y+WG G + + + ++ G
Sbjct: 181 LACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIVQLAAGA 240
Query: 361 WHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLR-TTRVSCGVWHTAAVV 419
H +T+ G ++ +G G LG + V +R V+CG H+ A+
Sbjct: 241 DHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLAL- 299
Query: 420 VATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPR----LFPECVAPLIDENICQVA 475
G+++ WG G+LG G P L IC ++
Sbjct: 300 -------------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSIS 346
Query: 476 CGHDLSVALTTSGHVYTMGSAAYGQLGVP---VADGLVPTRVDGEIAESFVEEVACGAYH 532
G S+ L G +Y G GQLG+ D PT++ I +E+VACG +H
Sbjct: 347 AGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIK---LEQVACGTHH 403
Query: 533 VAALTSTSKVYTWGKGANGQLGHGDKDNRNS-PTLVDFLKDKQVKRVVCGLNFTAIICLH 591
A T VY+WG G +G LG+G K+ PTL+ ++ G +
Sbjct: 404 NIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEE 463
Query: 592 K 592
Sbjct: 464 T 464
|
Length = 476 |
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|241519 cd13365, PH_PLC_plant-like, Plant-like Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|203924 pfam08381, BRX, Transcription factor regulating root and shoot growth via Pin3 | Back alignment and domain information |
|---|
| >gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >gnl|CDD|241279 cd01248, PH_PLC_ELMO1, Phospholipase C and Engulfment and cell motility protein 1 pleckstrin homology domain | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205888 pfam13713, BRX_N, Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|241517 cd13363, PH_PLC_delta, Phospholipase C-delta (PLC-delta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like | Back alignment and domain information |
|---|
| >gnl|CDD|241518 cd13364, PH_PLC_eta, Phospholipase C-eta (PLC-eta) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
| >gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding | Back alignment and domain information |
|---|
| >gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1 | Back alignment and domain information |
|---|
| >gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| COG5184 | 476 | ATS1 Alpha-tubulin suppressor and related RCC1 dom | 100.0 | |
| KOG1427 | 443 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PF08381 | 59 | BRX: Transcription factor regulating root and shoo | 99.97 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.85 | |
| KOG1428 | 3738 | consensus Inhibitor of type V adenylyl cyclases/Ne | 99.79 | |
| cd01248 | 115 | PH_PLC Phospholipase C (PLC) pleckstrin homology ( | 99.36 | |
| PF13713 | 39 | BRX_N: Transcription factor BRX N-terminal domain | 99.34 | |
| PF01363 | 69 | FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f | 99.16 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 99.11 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 99.08 | |
| smart00064 | 68 | FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | 98.97 | |
| PF00415 | 51 | RCC1: Regulator of chromosome condensation (RCC1) | 98.96 | |
| KOG1818 | 634 | consensus Membrane trafficking and cell signaling | 98.91 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.89 | |
| PF12814 | 123 | Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin | 98.87 | |
| KOG1729 | 288 | consensus FYVE finger containing protein [General | 98.83 | |
| KOG0941 | 850 | consensus E3 ubiquitin protein ligase [Posttransla | 98.79 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 98.76 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.71 | |
| KOG1819 | 990 | consensus FYVE finger-containing proteins [General | 98.68 | |
| PF13540 | 30 | RCC1_2: Regulator of chromosome condensation (RCC1 | 98.66 | |
| cd00065 | 57 | FYVE FYVE domain; Zinc-binding domain; targets pro | 98.48 | |
| KOG1842 | 505 | consensus FYVE finger-containing protein [General | 97.78 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 97.71 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.59 | |
| KOG1841 | 1287 | consensus Smad anchor for receptor activation [Def | 97.41 | |
| KOG1843 | 473 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| KOG4424 | 623 | consensus Predicted Rho/Rac guanine nucleotide exc | 95.14 | |
| cd01244 | 98 | PH_RasGAP_CG9209 RAS_GTPase activating protein (GA | 94.98 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 94.02 | |
| smart00233 | 102 | PH Pleckstrin homology domain. Domain commonly fou | 93.59 | |
| cd01235 | 101 | PH_SETbf Set binding factor Pleckstrin Homology (P | 93.11 | |
| PF00169 | 104 | PH: PH domain; InterPro: IPR001849 The pleckstrin | 92.89 | |
| cd01264 | 101 | PH_melted Melted pleckstrin homology (PH) domain. | 92.38 | |
| cd01238 | 106 | PH_Tec Tec pleckstrin homology (PH) domain. Tec pl | 92.31 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 92.19 | |
| KOG1811 | 1141 | consensus Predicted Zn2+-binding protein, contains | 92.16 | |
| PF02318 | 118 | FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 | 91.33 | |
| cd01233 | 100 | Unc104 Unc-104 pleckstrin homology (PH) domain. Un | 91.18 | |
| TIGR02449 | 65 | conserved hypothetical protein TIGR02449. Members | 90.76 | |
| cd00821 | 96 | PH Pleckstrin homology (PH) domain. Pleckstrin hom | 90.43 | |
| cd01236 | 104 | PH_outspread Outspread Pleckstrin homology (PH) do | 90.09 | |
| KOG0230 | 1598 | consensus Phosphatidylinositol-4-phosphate 5-kinas | 89.25 | |
| cd01266 | 108 | PH_Gab Gab (Grb2-associated binder) pleckstrin hom | 89.0 | |
| cd01251 | 103 | PH_centaurin_alpha Centaurin alpha Pleckstrin homo | 88.36 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 87.76 | |
| cd01265 | 95 | PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | 87.64 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 87.4 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 86.58 | |
| PF02403 | 108 | Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom | 85.78 | |
| KOG3669 | 705 | consensus Uncharacterized conserved protein, conta | 85.46 | |
| KOG0943 | 3015 | consensus Predicted ubiquitin-protein ligase/hyper | 84.61 | |
| PF03904 | 230 | DUF334: Domain of unknown function (DUF334); Inter | 84.53 | |
| PRK15396 | 78 | murein lipoprotein; Provisional | 84.33 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 84.24 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 84.16 | |
| COG3074 | 79 | Uncharacterized protein conserved in bacteria [Fun | 84.06 | |
| PF02403 | 108 | Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom | 83.29 | |
| PRK11637 | 428 | AmiB activator; Provisional | 82.89 | |
| cd00900 | 99 | PH-like Pleckstrin homology-like domain. Pleckstri | 82.67 | |
| cd01246 | 91 | PH_oxysterol_bp Oxysterol binding protein (OSBP) P | 81.63 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 81.23 | |
| PF11932 | 251 | DUF3450: Protein of unknown function (DUF3450); In | 80.9 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 80.79 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 80.39 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 80.24 |
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=413.77 Aligned_cols=365 Identities=28% Similarity=0.465 Sum_probs=293.3
Q ss_pred EeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeeccc--CCCCEEEEEeCCcEEEEEEcCCcEEEEeCCC
Q 001953 195 EDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVEST--MALDVHNIACGARHAVLVTKQGEIFSWGEES 272 (992)
Q Consensus 195 ~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~--~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N~ 272 (992)
.....-.+||+||.|. .++||.|.+. +.+..|...... ....|++++||+.|+++|+.||+||+||.|.
T Consensus 62 ~~~~~~~~v~~~Gsn~-~~eLGlg~de--------~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~ 132 (476)
T COG5184 62 HLLVKMASVYSWGSNG-MNELGLGNDE--------TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDND 132 (476)
T ss_pred hhhhheeeeEEEecCc-ceeeccCCch--------hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCc
Confidence 3567889999999998 8999999753 335677777655 6689999999999999999999999999999
Q ss_pred CCccCCCCC----------------CCccccEEeee----cCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCC
Q 001953 273 GGRLGHGRE----------------ADVSHPQLIEI----LSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGH 332 (992)
Q Consensus 273 ~GqLG~g~~----------------~~~~~P~~V~~----l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~ 332 (992)
.|+||.... .....|..|.. ....+|++++||++++++|+++|+||.||.+.. +-++.
T Consensus 133 ~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~--~e~~~ 210 (476)
T COG5184 133 DGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRC--GELGQ 210 (476)
T ss_pred ccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccc--ccccc
Confidence 999998651 12456777765 223479999999999999999999999999854 55555
Q ss_pred CCC--cc----ccccceeccCCCCCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccC-CeE
Q 001953 333 GSK--VS----CWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRG-LRT 405 (992)
Q Consensus 333 g~~--~~----~~~P~~v~~~l~~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~-~~I 405 (992)
+.. .. ..+|..+. ...|+++++|..|.++||++|+||+||+|.+||||.........+..+..+.. ..|
T Consensus 211 g~~~~s~k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i 286 (476)
T COG5184 211 GSYKNSQKTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNI 286 (476)
T ss_pred ccccccccceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhh
Confidence 522 22 23444443 45799999999999999999999999999999999987777666655554332 237
Q ss_pred EEEEeCCceEEEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCC----CCcccceeeccCCCCCeEEEeecCcEE
Q 001953 406 TRVSCGVWHTAAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDK----EPRLFPECVAPLIDENICQVACGHDLS 481 (992)
Q Consensus 406 ~~VacG~~ht~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~----~~~~~P~~V~~l~~~~I~~Ia~G~~ht 481 (992)
..|+||.+|++|| +++|++|+||.|-+||||.+.. .....|.....+.+..|..|++|..|+
T Consensus 287 ~~vacG~~h~~al--------------~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~ 352 (476)
T COG5184 287 KYVACGKDHSLAL--------------DEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHS 352 (476)
T ss_pred hhcccCcceEEEE--------------cCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceE
Confidence 8999999999999 8889999999999999999821 123456666666777899999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCC---cceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCC
Q 001953 482 VALTTSGHVYTMGSAAYGQLGVPVADG---LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDK 558 (992)
Q Consensus 482 vaLT~dG~Vy~wG~N~~GQLG~~~~~~---~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~ 558 (992)
++|..+|.||.||.+..||||.+.... ..|..+.. ..++.+|+||..|.++.+.+|+||.||+|.+|+||.|+.
T Consensus 353 l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~---~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~ 429 (476)
T COG5184 353 LILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSV---AIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK 429 (476)
T ss_pred EEEecCceEEEecCCccccccCcccceeecCCcccccc---ccceEEEEecCccceeeccCCceEEecCchhhhccCCch
Confidence 999999999999999999999977331 23333321 356999999999999999999999999999999999985
Q ss_pred C-CCCcceeeec--cCCCeEEEEEeCCcceeEEEee
Q 001953 559 D-NRNSPTLVDF--LKDKQVKRVVCGLNFTAIICLH 591 (992)
Q Consensus 559 ~-~~~~Pt~V~~--l~~~~V~~IacG~~hT~aI~~~ 591 (992)
. +...|+++.. +....++..-||.+++++...+
T Consensus 430 ~~~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~~~~ 465 (476)
T COG5184 430 EADVLVPTLIRQPLLSGHNIILAGYGNQFSVIEETM 465 (476)
T ss_pred hhhccccccccccccCCCceEEeccCcceEEEecch
Confidence 5 4556888763 6676788888888877766543
|
|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] | Back alignment and domain information |
|---|
| >PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF13713 BRX_N: Transcription factor BRX N-terminal domain | Back alignment and domain information |
|---|
| >PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
| >PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) | Back alignment and domain information |
|---|
| >KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis | Back alignment and domain information |
|---|
| >KOG1729 consensus FYVE finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >KOG1819 consensus FYVE finger-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B | Back alignment and domain information |
|---|
| >cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
| >KOG1842 consensus FYVE finger-containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
| >KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG1843 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
| >smart00233 PH Pleckstrin homology domain | Back alignment and domain information |
|---|
| >cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain | Back alignment and domain information |
|---|
| >PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ] | Back alignment and domain information |
|---|
| >cd01264 PH_melted Melted pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01238 PH_Tec Tec pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A | Back alignment and domain information |
|---|
| >cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >TIGR02449 conserved hypothetical protein TIGR02449 | Back alignment and domain information |
|---|
| >cd00821 PH Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function | Back alignment and domain information |
|---|
| >PRK15396 murein lipoprotein; Provisional | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >COG3074 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >cd00900 PH-like Pleckstrin homology-like domain | Back alignment and domain information |
|---|
| >cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
| >PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 992 | ||||
| 4d9s_A | 406 | Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv | 4e-46 | ||
| 4dnv_A | 370 | Crystal Structure Of The W285f Mutant Of Uvb-Resist | 5e-46 | ||
| 4dnw_A | 374 | Crystal Structure Of Uvb-Resistance Protein Uvr8 Le | 8e-46 | ||
| 4dnu_A | 372 | Crystal Structure Of The W285a Mutant Of Uvb-Resist | 2e-45 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 2e-39 | ||
| 3kci_A | 389 | The Third Rld Domain Of Herc2 Length = 389 | 7e-16 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 1e-16 | ||
| 3mvd_K | 423 | Crystal Structure Of The Chromatin Factor Rcc1 In C | 9e-04 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 3e-16 | ||
| 1a12_A | 413 | Regulator Of Chromosome Condensation (Rcc1) Of Huma | 5e-12 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 9e-16 | ||
| 1i2m_B | 402 | Ran-Rcc1-So4 Complex Length = 402 | 1e-11 | ||
| 3of7_A | 473 | The Crystal Structure Of Prp20p From Saccharomyces | 9e-08 | ||
| 1joc_A | 125 | Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I | 4e-06 | ||
| 2yqm_A | 89 | Solution Structure Of The Fyve Domain In Zinc Finge | 3e-05 | ||
| 2yw8_A | 82 | Crystal Structure Of Human Run And Fyve Domain-Cont | 4e-05 | ||
| 1hyi_A | 65 | Solution Structure Of The Eea1 Fyve Domain Complexe | 6e-05 |
| >pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 | Back alignment and structure |
|
| >pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 | Back alignment and structure |
| >pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 | Back alignment and structure |
| >pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 | Back alignment and structure |
| >pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 | Back alignment and structure |
| >pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125 | Back alignment and structure |
| >pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89 | Back alignment and structure |
| >pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82 | Back alignment and structure |
| >pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 430 bits (1109), Expect = e-143
Identities = 133/397 (33%), Positives = 187/397 (47%), Gaps = 33/397 (8%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G ++ WG G LGG E +P E+ L + G + VT
Sbjct: 20 GTIYGWGHN-HRGQLGGIE---------GAKVKVPTPCEALATLRPVQLIGGEQTLFAVT 69
Query: 261 KQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVA--CGEYHTCAVTRSGDLY 318
G++++ G +GGRLG G VS P L+E + V ++ VA G H A++ G++Y
Sbjct: 70 ADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVY 129
Query: 319 TWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDG 378
+WG+ G LGHG++ C PR + L GI + ++ G H+A VT+AG L+T+G G
Sbjct: 130 SWGEAED--GKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 379 SFGALGHGDHISTSIPREVETLRGLRTTRVSCGVW--HTAAVVVATDSSSSSPSGSTSCG 436
+G LGH D P+ VE L+G R ++CG T + T
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL--------------TDDD 232
Query: 437 KLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSA 496
+++WGDGD G+LG G + P + L + +V CG SVALT SG VYT G
Sbjct: 233 TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292
Query: 497 AYGQLGVPVADG-LVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGH 555
Y +LG D P +V G + V +A G+ H T +VYTWG GQLG
Sbjct: 293 DYHRLGHGSDDHVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGD 351
Query: 556 GDKDNRNSPTLVDFLKDKQVKRVVCGLNFTAIICLHK 592
G + P LV L+ K+V RV CG T K
Sbjct: 352 GTTNAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 | Back alignment and structure |
|---|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125 | Back alignment and structure |
|---|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82 | Back alignment and structure |
|---|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84 | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 Length = 131 | Back alignment and structure |
|---|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88 | Back alignment and structure |
|---|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73 | Back alignment and structure |
|---|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220 | Back alignment and structure |
|---|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226 | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434 | Back alignment and structure |
|---|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120 | Back alignment and structure |
|---|
| >3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A Length = 203 | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Length = 885 | Back alignment and structure |
|---|
| >3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168 | Back alignment and structure |
|---|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 | Back alignment and structure |
|---|
| >3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A Length = 120 | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Length = 147 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 100.0 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 100.0 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 100.0 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 100.0 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 100.0 | |
| 1mai_A | 131 | Phospholipase C delta-1; pleckstrin, inositol tris | 99.59 | |
| 1x4u_A | 84 | Zinc finger, FYVE domain containing 27 isoform B; | 99.42 | |
| 1z2q_A | 84 | LM5-1; membrane protein, FYVE domain, zinc-finger; | 99.33 | |
| 2yw8_A | 82 | RUN and FYVE domain-containing protein 1; structur | 99.32 | |
| 1joc_A | 125 | EEA1, early endosomal autoantigen 1; FYVE domain, | 99.27 | |
| 3t7l_A | 90 | Zinc finger FYVE domain-containing protein 16; str | 99.25 | |
| 1vfy_A | 73 | Phosphatidylinositol-3-phosphate binding FYVE doma | 99.23 | |
| 1wfk_A | 88 | Zinc finger, FYVE domain containing 19; riken stru | 99.15 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 99.1 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 99.06 | |
| 1y02_A | 120 | CARP2, FYVE-ring finger protein sakura; zinc-bindi | 99.0 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.85 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.83 | |
| 3mpx_A | 434 | FYVE, rhogef and PH domain-containing protein 5; s | 98.81 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.78 | |
| 3a98_B | 203 | Engulfment and cell motility protein 1; protein-pr | 98.32 | |
| 2lul_A | 164 | Tyrosine-protein kinase TEC; structural genomics, | 96.04 | |
| 1v5u_A | 117 | SBF1, SET binding factor 1; MTMR5, the pleckstrin | 94.8 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.7 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.55 | |
| 1fao_A | 126 | Dual adaptor of phosphotyrosine and 3- phosphoinos | 94.52 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.0 | |
| 2dn6_A | 115 | KIAA0640 protein; PH domain, structural genomics, | 93.5 | |
| 2cod_A | 115 | Centaurin-delta 1; ARF GAP and RHO GAP with ankyri | 93.35 | |
| 1eaz_A | 125 | Tandem PH domain containing protein-1; lipid-bindi | 93.34 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 93.3 | |
| 2d9v_A | 130 | Pleckstrin homology domain-containing protein fami | 93.16 | |
| 2dhk_A | 119 | TBC1 domain family member 2; PH domain, paris-1, s | 93.03 | |
| 4gbf_A | 400 | Phikz131; 7-bladed beta-propeller, possibly partic | 92.58 | |
| 2vrw_B | 406 | P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP | 92.5 | |
| 1btk_A | 169 | Bruton'S tyrosine kinase; transferase, PH domain, | 92.34 | |
| 1v89_A | 118 | Hypothetical protein KIAA0053; pleckstrin homology | 92.2 | |
| 1pls_A | 113 | Pleckstrin homology domain; phosphorylation; NMR { | 91.92 | |
| 1x05_A | 129 | Pleckstrin; PH domain, structural genomics, NPPSFA | 91.81 | |
| 1wgq_A | 109 | FYVE, rhogef and PH domain containing 6; ethanol d | 91.52 | |
| 1u5d_A | 108 | SKAP55, SRC kinase-associated phosphoprotein of 55 | 91.38 | |
| 1wg7_A | 150 | Dedicator of cytokinesis protein 9; pleckstrin hom | 91.22 | |
| 2d9x_A | 120 | Oxysterol binding protein-related protein 11; PH d | 90.61 | |
| 3tfm_A | 228 | Myosin X; split PH domain, motor protein; 2.53A {R | 89.82 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.56 | |
| 1fgy_A | 127 | GRP1; PH domain, signaling protein; HET: 4IP; 1.50 | 89.34 | |
| 1zbd_B | 134 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 89.19 | |
| 2zet_C | 153 | Melanophilin; complex, GTP-binding protein, GTPase | 88.55 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 88.17 | |
| 2d9y_A | 117 | Pleckstrin homology domain-containing protein fami | 88.0 | |
| 2rov_A | 117 | RHO-associated protein kinase 2; ATP-binding, coil | 87.56 | |
| 2i5f_A | 109 | Pleckstrin; PH domain, protein-inositol phosphate | 87.22 | |
| 1x1f_A | 149 | Signal-transducing adaptor protein 1; docking prot | 87.21 | |
| 1dyn_A | 125 | Dynamin; signal transduction protein; 2.20A {Homo | 87.04 | |
| 2yry_A | 122 | Pleckstrin homology domain-containing family A mem | 87.02 | |
| 1upq_A | 123 | PEPP1; PH domain, phosphoinositide binding, signal | 86.41 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 86.38 | |
| 1u5f_A | 148 | SRC-associated adaptor protein; PH domain of SKAP- | 85.73 | |
| 2rlo_A | 128 | Centaurin-gamma 1; split PH domain, alternative sp | 85.61 | |
| 2cof_A | 107 | Protein KIAA1914; PH domain, structural genomics, | 85.6 | |
| 1qqg_A | 264 | IRS-1, insulin receptor substrate 1; beta-sandwhic | 85.26 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 85.11 | |
| 2dkp_A | 128 | Pleckstrin homology domain-containing family A mem | 84.93 | |
| 3aj4_A | 112 | Pleckstrin homology domain-containing family B ME; | 84.84 | |
| 1jcd_A | 52 | Major outer membrane lipoprotein; protein folding, | 84.54 | |
| 1v88_A | 130 | Oxysterol binding protein-related protein 8; vesic | 84.27 | |
| 3rcp_A | 103 | Pleckstrin homology domain-containing family A ME; | 84.19 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 84.03 | |
| 3u1c_A | 101 | Tropomyosin alpha-1 chain; anti-parallel coiled co | 83.85 | |
| 2eqb_B | 97 | RAB guanine nucleotide exchange factor SEC2; coile | 83.4 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 83.02 | |
| 3a2a_A | 58 | Voltage-gated hydrogen channel 1; voltage-gated pr | 82.59 | |
| 1u5e_A | 211 | SRC-associated adaptor protein; novel dimerization | 81.97 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 81.48 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 81.32 | |
| 2rsg_A | 94 | Collagen type IV alpha-3-binding protein; pleckstr | 80.18 |
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-67 Score=606.53 Aligned_cols=372 Identities=35% Similarity=0.638 Sum_probs=335.3
Q ss_pred ceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCC
Q 001953 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEE 271 (992)
Q Consensus 192 ~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N 271 (992)
..+.+++++|+||+||.|. .||||.+.. .+...|.+++.+...+|++|+||..|+++|+++|+||+||.|
T Consensus 11 ~~~~~l~~~G~v~~wG~n~-~GqLG~~~~---------~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n 80 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNH-RGQLGGIEG---------AKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80 (389)
T ss_dssp ----------CEEEEEECT-TSTTSSCSC---------SEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccceeECCCCeEEEeeCCC-CccCCCCcC---------ccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECC
Confidence 3567899999999999999 999997653 466788888888888999999999999999999999999999
Q ss_pred CCCccCCCCCCCccccEEeeecCCCc--EEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCC
Q 001953 272 SGGRLGHGREADVSHPQLIEILSGVN--VELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLD 349 (992)
Q Consensus 272 ~~GqLG~g~~~~~~~P~~V~~l~~~~--I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~ 349 (992)
.+||||++.......|.++..+.+.. +++|+||.+|++||+++|+||+||.| ..||||+++......|.++.. +.
T Consensus 81 ~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n--~~GqLG~g~~~~~~~p~~v~~-l~ 157 (389)
T 3kci_A 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA--EDGKLGHGNRSPCDRPRVIES-LR 157 (389)
T ss_dssp GGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC--GGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC--CCCcCCCCCCccCcCCeEecc-cC
Confidence 99999999988889999999887764 47888999999999999999999999 459999999988889998874 66
Q ss_pred CCcEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcCCCcCeEEeeccCCeEEEEEeCC--ceEEEEEEccCCCCC
Q 001953 350 GIHLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHISTSIPREVETLRGLRTTRVSCGV--WHTAAVVVATDSSSS 427 (992)
Q Consensus 350 ~~~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~~~~P~~V~~l~~~~I~~VacG~--~ht~aLve~~~~~~~ 427 (992)
+.+|++|+||..|+++|+++|+||+||.|.+||||+++......|+.+..+.+.+|++|+||. .|+++|
T Consensus 158 ~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l--------- 228 (389)
T 3kci_A 158 GIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCL--------- 228 (389)
T ss_dssp TSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEE---------
T ss_pred CCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEE---------
Confidence 788999999999999999999999999999999999999989999999999999999999995 899999
Q ss_pred CCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCCCCeEEEeecCcEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 001953 428 SPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVACGHDLSVALTTSGHVYTMGSAAYGQLGVPVAD 507 (992)
Q Consensus 428 ~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~~~I~~Ia~G~~htvaLT~dG~Vy~wG~N~~GQLG~~~~~ 507 (992)
+++|+||+||.|.+||||.++......|..+..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 229 -----~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 229 -----TDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp -----ETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCC
T ss_pred -----ccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCc
Confidence 777999999999999999999999999999998888899999999999999999999999999999999997654
Q ss_pred -CcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcceeeeccCCCeEEEEEeCCccee
Q 001953 508 -GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDFLKDKQVKRVVCGLNFTA 586 (992)
Q Consensus 508 -~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~l~~~~V~~IacG~~hT~ 586 (992)
...|..+.. +.+.+|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|..+.+.+|.+|+||..||+
T Consensus 304 ~~~~P~~v~~-l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~~ht~ 382 (389)
T 3kci_A 304 HVRRPRQVQG-LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHTL 382 (389)
T ss_dssp CEEEEEECGG-GTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEETTEEE
T ss_pred cccCCeEecc-CCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEEEEecCCcEE
Confidence 356888774 677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 001953 587 IICLH 591 (992)
Q Consensus 587 aI~~~ 591 (992)
||+..
T Consensus 383 al~~~ 387 (389)
T 3kci_A 383 AWSTS 387 (389)
T ss_dssp EECC-
T ss_pred EEecC
Confidence 99854
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
| >1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} | Back alignment and structure |
|---|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A | Back alignment and structure |
|---|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A | Back alignment and structure |
|---|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} | Back alignment and structure |
|---|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 | Back alignment and structure |
|---|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 | Back alignment and structure |
|---|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 | Back alignment and structure |
|---|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
| >3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A | Back alignment and structure |
|---|
| >2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} | Back alignment and structure |
|---|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A | Back alignment and structure |
|---|
| >1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* | Back alignment and structure |
|---|
| >1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A | Back alignment and structure |
|---|
| >1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} | Back alignment and structure |
|---|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
| >1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* | Back alignment and structure |
|---|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 | Back alignment and structure |
|---|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} | Back alignment and structure |
|---|
| >2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A | Back alignment and structure |
|---|
| >1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A | Back alignment and structure |
|---|
| >2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A | Back alignment and structure |
|---|
| >2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* | Back alignment and structure |
|---|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A | Back alignment and structure |
|---|
| >1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A | Back alignment and structure |
|---|
| >1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 | Back alignment and structure |
|---|
| >3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A | Back alignment and structure |
|---|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
| >3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A | Back alignment and structure |
|---|
| >2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A | Back alignment and structure |
|---|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 992 | ||||
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-40 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-23 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 3e-22 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 7e-21 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-20 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 2e-19 | |
| d1a12a_ | 401 | b.69.5.1 (A:) Regulator of chromosome condensation | 1e-14 | |
| d1joca1 | 64 | g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) | 7e-21 | |
| d1dvpa2 | 72 | g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me | 1e-18 | |
| d1vfya_ | 67 | g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch | 9e-18 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-17 | |
| d1jtdb_ | 273 | b.69.5.2 (B:) beta-lactamase inhibitor protein-II, | 1e-14 | |
| d1wfka_ | 88 | g.50.1.1 (A:) Zinc finger FYVE domain containing p | 2e-16 | |
| d1maia_ | 119 | b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus | 5e-16 | |
| d2zkmx3 | 131 | b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human | 3e-14 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 8e-14 | |
| d1y02a2 | 51 | g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro | 1e-13 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 152 bits (384), Expect = 1e-40
Identities = 96/411 (23%), Positives = 164/411 (39%), Gaps = 52/411 (12%)
Query: 201 GDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVT 260
G V G+G G LG GE+ + P V DV G H V ++
Sbjct: 15 GLVLTLGQG-DVGQLGLGEN--------VMERKKPALVSIP--EDVVQAEAGGMHTVCLS 63
Query: 261 KQGEIFSWGEESGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTW 320
K G+++S+G G LG + S ++ V V+ G+ HT A+T G ++ W
Sbjct: 64 KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123
Query: 321 GDGTYNSGLLGHGSKVSCWIPRKVSGNLDGIHLSYISCGLWHTAVVTSAGHLFTFGDGSF 380
G N+G++G + + + + ++ G H ++T+ G L+T G G
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQ--VQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQ 181
Query: 381 GALGHGDHISTS----------------IPREVETLRGLRTTRVSCGVWHTAAVVVATDS 424
G LG + + + + + +R CG + T A+
Sbjct: 182 GQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAI------ 235
Query: 425 SSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLIDENICQVA--CGHDLSV 482
+ G ++ +G + +LG E P+ + + V G +V
Sbjct: 236 --------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTV 287
Query: 483 ALTTSGHVYTMGSAAYGQLGVP--VADGLVPTRVDGEIAESFVEEVACGAYHVAALTSTS 540
+ + G Y++G A YG+LG+ + +PT + V VACGA A+T
Sbjct: 288 CMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL---PAVSSVACGASVGYAVTKDG 344
Query: 541 KVYTWGKGANGQLGHGDKDNRNSPTLV--DFLKDKQVKRVVCGLNFTAIIC 589
+V+ WG G N QLG G ++ SP + L+++ V V G T ++
Sbjct: 345 RVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLV 395
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 | Back information, alignment and structure |
|---|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64 | Back information, alignment and structure |
|---|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 | Back information, alignment and structure |
|---|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 | Back information, alignment and structure |
|---|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 | Back information, alignment and structure |
|---|
| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119 | Back information, alignment and structure |
|---|
| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 131 | Back information, alignment and structure |
|---|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 992 | |||
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 100.0 | |
| d1maia_ | 119 | Phospholipase C delta-1 {Rat (Rattus norvegicus) [ | 99.42 | |
| d1joca1 | 64 | Eea1 {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2zkmx3 | 131 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d1dvpa2 | 72 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 99.22 | |
| d1vfya_ | 67 | vps27p protein {Baker's yeast (Saccharomyces cerev | 99.16 | |
| d1wfka_ | 88 | Zinc finger FYVE domain containing protein 19 {Mou | 99.09 | |
| d1y02a2 | 51 | Rififylin (FYVE-RING finger protein Sakura) {Human | 98.62 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.84 | |
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 97.71 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.9 | |
| d1faoa_ | 100 | Dual adaptor of phosphotyrosine and 3-phosphoinosi | 94.71 | |
| d1btka_ | 169 | Bruton's tyrosine kinase {Human (Homo sapiens) [Ta | 94.56 | |
| d1v5ua_ | 117 | SET binding factor 1, Sbf1 {Mouse (Mus musculus) [ | 94.11 | |
| d1u5fa1 | 111 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 93.58 | |
| d1u5da1 | 106 | Src kinase-associated phosphoprotein SKAP55 (SCAP1 | 93.57 | |
| d1eaza_ | 103 | Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | 92.8 | |
| d2coda1 | 102 | Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96 | 91.38 | |
| d1wg7a_ | 150 | Dedicator of cytokinesis protein 9, DOCK9 {Human ( | 90.73 | |
| d1x1fa1 | 136 | Signal-transducing adaptor protein 1, STAP-1 {Huma | 90.38 | |
| d1u5ea1 | 209 | Src-associated adaptor protein Skap2 {Mouse (Mus m | 89.48 | |
| d1omwa2 | 119 | G-protein coupled receptor kinase 2 (beta-adrenerg | 88.34 | |
| d1qqga1 | 103 | Insulin receptor substrate 1, IRS-1 {Human (Homo s | 87.62 | |
| d1plsa_ | 113 | Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | 87.17 | |
| d2coaa1 | 112 | Protein kinase c, d2 type {Human (Homo sapiens) [T | 86.27 | |
| d1v5ma_ | 136 | SH2 and PH domain-containing adapter protein APS { | 85.56 | |
| d1upqa_ | 107 | Phosphoinositol 3-phosphate binding protein-1, PEP | 85.43 | |
| d2fjla1 | 101 | Phosphoinositide phospholipase C, PLC-gamma-1 {Rat | 84.92 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 84.7 | |
| d1wjma_ | 123 | beta-spectrin {Human (Homo sapiens), brain 2 isofo | 84.1 | |
| d1wgqa_ | 109 | FYVE, RhoGEF and PH domain containing protein 6, F | 82.96 | |
| d1v89a_ | 118 | Rho-GTPase-activating protein 25 (KIAA0053) {Human | 82.18 | |
| d2coca1 | 99 | FYVE, RhoGEF and PH domain containing protein 3, F | 81.98 | |
| d1seta1 | 110 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 81.75 | |
| d2adza1 | 105 | Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1 | 81.51 | |
| d1x1ga1 | 116 | Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} | 81.49 |
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.1e-57 Score=511.99 Aligned_cols=371 Identities=27% Similarity=0.424 Sum_probs=312.8
Q ss_pred ceeEeecCCCcEEEEcCCCCCcccCCCCCcccccccccccccCceeecccCCCCEEEEEeCCcEEEEEEcCCcEEEEeCC
Q 001953 192 SAHEDFDSLGDVFIWGEGIANGFLGGGEHRVGYSFSRQTDALLPKAVESTMALDVHNIACGARHAVLVTKQGEIFSWGEE 271 (992)
Q Consensus 192 ~~~~~l~s~G~Vy~WG~n~~~GqLG~g~~~~~~~~~~~~~~~~P~~v~~~~~~~I~~Ia~G~~hs~~Lt~dG~Vy~WG~N 271 (992)
.|.++++.+|+||+||.|. .||||.|... .+...|.+|+.+ .+|++|+||..|+++|+.+|+||+||.|
T Consensus 6 ~h~~~~~~~G~vy~wG~n~-~GqLG~g~~~--------~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~~G~vy~wG~n 74 (401)
T d1a12a_ 6 SHRSHSTEPGLVLTLGQGD-VGQLGLGENV--------MERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCN 74 (401)
T ss_dssp CCTTCCCCCBEEEEEEECT-TSTTCSCTTC--------CEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred eEEEEECCCCEEEEEeCCC-CCCCCCCCCC--------ceeccCEEeCCC--CCeEEEEeCCCEEEEEeCCCEEEEEeCC
Confidence 3677899999999999999 9999998642 456778888754 4699999999999999999999999999
Q ss_pred CCCccCCCCCCCccccEEeeecCCCcEEEEEecCcEEEEEEcCCcEEEEcCCCCCCCccCCCCCccccccceeccCCCCC
Q 001953 272 SGGRLGHGREADVSHPQLIEILSGVNVELVACGEYHTCAVTRSGDLYTWGDGTYNSGLLGHGSKVSCWIPRKVSGNLDGI 351 (992)
Q Consensus 272 ~~GqLG~g~~~~~~~P~~V~~l~~~~I~~Va~G~~hs~aLT~dG~VysWG~n~~~~GqLG~g~~~~~~~P~~v~~~l~~~ 351 (992)
.+||||++...+...|.+.......+|++|+||..|+++++++|+||+||.+.+..++++.........+... ...+.
T Consensus 75 ~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 152 (401)
T d1a12a_ 75 DEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQ--VQLDV 152 (401)
T ss_dssp TTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEE--ECCSS
T ss_pred CCCCCCcccccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeee--eccCC
Confidence 9999999988887777777777778999999999999999999999999998665566655554443332222 23456
Q ss_pred cEEEEEECcceeEEEecCCeEEEEecCCCCCCCCCCCcC-----------CCcCeEEe-----eccCCeEEEEEeCCceE
Q 001953 352 HLSYISCGLWHTAVVTSAGHLFTFGDGSFGALGHGDHIS-----------TSIPREVE-----TLRGLRTTRVSCGVWHT 415 (992)
Q Consensus 352 ~Iv~VacG~~hs~aLT~dG~Vy~wG~n~~GqLG~g~~~~-----------~~~P~~V~-----~l~~~~I~~VacG~~ht 415 (992)
+|++|+||..|+++++++|++|+||.|.+||||++.... ...|..+. .....+|.+|+||.+|+
T Consensus 153 ~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~ 232 (401)
T d1a12a_ 153 PVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFT 232 (401)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEE
T ss_pred ceeEEEecccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeE
Confidence 799999999999999999999999999999999874321 12344443 22345899999999999
Q ss_pred EEEEEccCCCCCCCCCCCCCCeEEEEeCCCCCCCCCCCCCCcccceeeccCCC--CCeEEEeecCcEEEEEeCCCcEEEE
Q 001953 416 AAVVVATDSSSSSPSGSTSCGKLFTWGDGDKGRLGHGDKEPRLFPECVAPLID--ENICQVACGHDLSVALTTSGHVYTM 493 (992)
Q Consensus 416 ~aLve~~~~~~~~~~~st~dG~Vy~WG~n~~GQLG~g~~~~~~~P~~V~~l~~--~~I~~Ia~G~~htvaLT~dG~Vy~w 493 (992)
++| +.+|+||+||.|.+|++|.........+..+..+.. ..|+.|++|..|+++|+.+|+||+|
T Consensus 233 ~~l--------------~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~w 298 (401)
T d1a12a_ 233 FAI--------------SHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298 (401)
T ss_dssp EEE--------------ETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEE--------------ecCCeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEe
Confidence 999 777999999999999999998888877777765443 5699999999999999999999999
Q ss_pred eCCCCCCCCCCCCC--CcceeeecCCcCCCCEEEEEEcCCEEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCcceeeec--
Q 001953 494 GSAAYGQLGVPVAD--GLVPTRVDGEIAESFVEEVACGAYHVAALTSTSKVYTWGKGANGQLGHGDKDNRNSPTLVDF-- 569 (992)
Q Consensus 494 G~N~~GQLG~~~~~--~~~P~~v~~~l~~~~V~~Ia~G~~Ht~aLt~~G~Vy~WG~N~~GQLG~G~~~~~~~Pt~V~~-- 569 (992)
|.|.+||||.+... ...|..+.. ...|++|+||.+|++||+++|+||+||.|.+||||+|+..+...|++|..
T Consensus 299 G~n~~gqlG~g~~~~~~~~P~~i~~---~~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~ 375 (401)
T d1a12a_ 299 GRAEYGRLGLGEGAEEKSIPTLISR---LPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 375 (401)
T ss_dssp ECCGGGTTCSCTTCCCEEEEEECCS---SSSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred cccccCccCCCcccccccCCEEcCC---CCCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence 99999999987543 346777653 25699999999999999999999999999999999999999999999863
Q ss_pred cCCCeEEEEEeCCcceeEEEeec
Q 001953 570 LKDKQVKRVVCGLNFTAIICLHK 592 (992)
Q Consensus 570 l~~~~V~~IacG~~hT~aI~~~k 592 (992)
+++.+|.+|+||.+||++|+.+.
T Consensus 376 ~~~~~v~~v~~G~~hs~~l~~d~ 398 (401)
T d1a12a_ 376 LENRVVLSVSSGGQHTVLLVKDK 398 (401)
T ss_dssp TTTEEEEEEEECSSEEEEEEEEC
T ss_pred CCCCEEEEEEEccceEEEEEECC
Confidence 56778999999999999999763
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
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| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
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| >d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
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| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
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| >d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
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| >d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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