Citrus Sinensis ID: 001959

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990-

MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSSSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

cccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEccccccccccccEEEEccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEcEEEEEEEEEEccccccccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHccccccEEEEEEcHHHHHHHHHcccccEEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEEEEEEcccccccEEEEEcccccccccEEEEEEEccccccccccccccccEEEEccccccccccccccccccccccccEEEEEccccccccccccccccEEcccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEcccccc

cccccEEEcccEEcccccccccccccEEEEEEEEEcccccEcEEEEEEcccEEEEcccccEEEEcccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEEEEEEHHHHHHccccccccEEEEEEEccccccccccEEEEEccccccHHHHEEEEEccccEEEEEEccHHHHHHHHHccccEEEEEEccccEEEEEEccccccccccccccccccccccEEEEcccccccEEEEHHHccHHHccccHHHHHHHHHHccccccccccEEEEHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHcccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHEEEEEEEEEcccHcccEEEEEcccccccccEEEEEEEcccHHHHEccccccccEEEEEcccccEEEEEEcccccEEEEEEcEEEEEEcccccccEEcccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccc

mpagsvslsgavetkfttssladlpyqvQSIEIEieeegyvgmpfvlqsggnwiknkgsdfyvdfsyesKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWnknynvkpreISKAQDRLTDLLQNVYISNPECREIVRMILSTvgrggegdvgqRIRDEILVIQRNnnckggmmeEWHQKlhnntspddVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRaihsepnfrrdqkDGLLRDLGNYMRTLKAVHSGADLESAITNCLgyrsegqgfmvgvqinpipnlpsgfpELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLalslddneDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDpvlrktaslgswqvispVEVFGYVAVVDELLAVqdksydrptILLARRVkgeeeipdgtvAVLTadmpdvlsHVSVRArnckvcfatcfdpniladlqsnegkmlhlkptsaDIAYSVVegselqdsssanlkeedgpsssVALVKKQFagryaitsdeftgelvGAKSRNIaylkgkvpswigiptsvalpfGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEmkssgmpwpgdegeQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIhttnpssgdssEIYAEVVKGLGEtlvgaypgralsfvckkndlkyprvlgypskpiglfirrsiifrsdsngedlegyagaglydsvpmdeAEKVVLDYssdrlitdghFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

mpagsvslsgavetkfttssladlpyQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNvyisnpecREIVRMILStvgrggegdvgqrirDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTlndngitkERLLSYDRAihsepnfrrdqkdgLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTAslgswqvisPVEVFGYVAVVDELLavqdksydrpTILLarrvkgeeeipDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSelqdsssanlkeedgpssSVALVKKQFAGRYAItsdeftgelvgAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIREtvlqmkapnQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKkndlkyprvlgypskpiglFIRRSIifrsdsngeDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFgsaqdiegvvrdGKIYVVQTRPQM

MPAGSVSLSGAVETKFTTSSLADLPYQVQSieieieeeGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRagsaaalslllNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSSSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

****************TTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHS********KDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSN**KMLHL*****DIAY**************************ALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQ************************************************RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTN******SEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVV******

****S**LSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFY*******************TAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSE*****V***INPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSN*********DNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSAD**************************************RYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIF*S******LEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ*

*********GAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEG********************VALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQM

***GSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSDFYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGELGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMILSTVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIKSDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSGADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLLEARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILENLALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQPSAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEVFGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARNCKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEG******************SSVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRP**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		991	2.2.26 [Sep-21-2011]
Q8LPT9		1475	Alpha-glucan water dikina	N/A	no	1.0	0.671	0.986	0.0
Q9AWA5		1464	Alpha-glucan water dikina	N/A	no	0.996	0.674	0.786	0.0
Q9SAC6		1399	Alpha-glucan water dikina	yes	no	0.995	0.705	0.784	0.0
Q9STV0		1278	Alpha-glucan water dikina	no	no	0.983	0.762	0.546	0.0
Q6ZY51		1196	Phosphoglucan, water diki	no	no	0.517	0.428	0.271	2e-40
Q2QTC2		1206	Phosphoglucan, water diki	no	no	0.533	0.438	0.267	3e-40
O29548		753	Probable phosphoenolpyruv	yes	no	0.267	0.351	0.248	1e-12
O57830		821	Probable phosphoenolpyruv	yes	no	0.171	0.207	0.281	3e-11
Q9V2H7		819	Probable phosphoenolpyruv	yes	no	0.171	0.207	0.276	7e-11
O27190		684	Probable phosphoenolpyruv	yes	no	0.272	0.394	0.227	1e-10

>sp\|Q8LPT9\|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1	Back alignment and function desciption

 Score = 2013 bits (5215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 978/991 (98%), Positives = 982/991 (99%)

Query: 1    MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSD 60
            +PAGSV LSG+VET FTTSSLADLPYQVQSIEIEIEEEGYVGMP VLQSGGNWIKNKGSD
Sbjct: 485  LPAGSVLLSGSVETTFTTSSLADLPYQVQSIEIEIEEEGYVGMPSVLQSGGNWIKNKGSD 544

Query: 61   FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
            FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE
Sbjct: 545  FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 604

Query: 121  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
            LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPE REIVRMIL
Sbjct: 605  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPEYREIVRMIL 664

Query: 181  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
            STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK
Sbjct: 665  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 724

Query: 241  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
            SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG
Sbjct: 725  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 784

Query: 301  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
            ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL
Sbjct: 785  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 844

Query: 361  EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
            EARQEIRPLL KHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN
Sbjct: 845  EARQEIRPLLCKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 904

Query: 421  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
            LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALA KADWYQKVLQP
Sbjct: 905  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALAGKADWYQKVLQP 964

Query: 481  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 540
            SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV
Sbjct: 965  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 1024

Query: 541  FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
            FGYVAVVDELLAVQDKSYD+PTILLARRVKGEEEIP GTVAVLTADMPDVLSHVSVRARN
Sbjct: 1025 FGYVAVVDELLAVQDKSYDQPTILLARRVKGEEEIPHGTVAVLTADMPDVLSHVSVRARN 1084

Query: 601  CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
            CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS
Sbjct: 1085 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 1144

Query: 661  SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
            SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL
Sbjct: 1145 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 1204

Query: 721  SDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 780
            SD+INQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG
Sbjct: 1205 SDDINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 1264

Query: 781  DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 840
            DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT
Sbjct: 1265 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 1324

Query: 841  TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 900
            TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK PRVLGYPSKPIGLFIRR
Sbjct: 1325 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKSPRVLGYPSKPIGLFIRR 1384

Query: 901  SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAG 960
            SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD LITDGHFQQSILSSIARAG
Sbjct: 1385 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQSILSSIARAG 1444

Query: 961  CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 991
            CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM
Sbjct: 1445 CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 1475

Mediates the incorporation of phosphate into starch-like alpha-glucan, mostly at the C-6 position of glucose units. Acts as an overall regulator of starch mobilization. Required for starch degradation, suggesting that the phosphate content of starch regulates its degradability.
Citrus reticulata (taxid: 85571)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4

>sp\|Q9AWA5\|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2	Back alignment and function description

>sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3	Back alignment and function description

>sp\|Q6ZY51\|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1	Back alignment and function description

>sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2	Back alignment and function description

>sp\|O29548\|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O57830\|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|Q9V2H7\|PPSA_PYRAB Probable phosphoenolpyruvate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O27190\|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		991
57012985		1475	RecName: Full=Alpha-glucan water dikinas	1.0	0.671	0.986	0.0
224110912		1477	predicted protein [Populus trichocarpa]	0.996	0.668	0.819	0.0
255573969		1469	alpha-glucan water dikinase, chloroplast	0.997	0.673	0.833	0.0
356526777		1459	PREDICTED: alpha-glucan water dikinase,	0.997	0.677	0.794	0.0
225425619		1470	PREDICTED: alpha-glucan water dikinase,	0.998	0.673	0.804	0.0
356567660		1459	PREDICTED: alpha-glucan water dikinase,	0.997	0.677	0.791	0.0
449434955		1482	PREDICTED: alpha-glucan water dikinase,	0.996	0.666	0.793	0.0
57012986		1464	RecName: Full=Alpha-glucan water dikinas	0.996	0.674	0.786	0.0
350534602		1465	glucan water dikinase [Solanum lycopersi	0.996	0.674	0.780	0.0
384383722		1464	alpha-glucan water dikinase [Solanum tub	0.996	0.674	0.785	0.0

>gi\|57012985\|sp\|Q8LPT9.1\|GWD1_CITRE RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related protein R1; Flags: Precursor gi\|20384925\|gb\|AAM18228.1\| R1 [Citrus reticulata]	Back alignment and taxonomy information

 Score = 2013 bits (5215), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 978/991 (98%), Positives = 982/991 (99%)

Query: 1    MPAGSVSLSGAVETKFTTSSLADLPYQVQSIEIEIEEEGYVGMPFVLQSGGNWIKNKGSD 60
            +PAGSV LSG+VET FTTSSLADLPYQVQSIEIEIEEEGYVGMP VLQSGGNWIKNKGSD
Sbjct: 485  LPAGSVLLSGSVETTFTTSSLADLPYQVQSIEIEIEEEGYVGMPSVLQSGGNWIKNKGSD 544

Query: 61   FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
            FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE
Sbjct: 545  FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 604

Query: 121  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
            LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPE REIVRMIL
Sbjct: 605  LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPEYREIVRMIL 664

Query: 181  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
            STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK
Sbjct: 665  STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 724

Query: 241  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
            SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG
Sbjct: 725  SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 784

Query: 301  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
            ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL
Sbjct: 785  ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 844

Query: 361  EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
            EARQEIRPLL KHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN
Sbjct: 845  EARQEIRPLLCKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 904

Query: 421  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
            LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALA KADWYQKVLQP
Sbjct: 905  LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALAGKADWYQKVLQP 964

Query: 481  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 540
            SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV
Sbjct: 965  SAEYLGTLLSVDKWAVDIFTEEMIRAGSAAALSLLLNRLDPVLRKTASLGSWQVISPVEV 1024

Query: 541  FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
            FGYVAVVDELLAVQDKSYD+PTILLARRVKGEEEIP GTVAVLTADMPDVLSHVSVRARN
Sbjct: 1025 FGYVAVVDELLAVQDKSYDQPTILLARRVKGEEEIPHGTVAVLTADMPDVLSHVSVRARN 1084

Query: 601  CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
            CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS
Sbjct: 1085 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 1144

Query: 661  SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
            SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL
Sbjct: 1145 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 1204

Query: 721  SDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 780
            SD+INQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG
Sbjct: 1205 SDDINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 1264

Query: 781  DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 840
            DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT
Sbjct: 1265 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 1324

Query: 841  TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 900
            TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLK PRVLGYPSKPIGLFIRR
Sbjct: 1325 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKSPRVLGYPSKPIGLFIRR 1384

Query: 901  SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAG 960
            SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSD LITDGHFQQSILSSIARAG
Sbjct: 1385 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDHLITDGHFQQSILSSIARAG 1444

Query: 961  CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 991
            CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM
Sbjct: 1445 CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 1475

Source: Citrus reticulata

Species: Citrus reticulata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224110912\|ref\|XP_002315679.1\| predicted protein [Populus trichocarpa] gi\|222864719\|gb\|EEF01850.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255573969\|ref\|XP_002527902.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi\|223532677\|gb\|EEF34459.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356526777\|ref\|XP_003531993.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|225425619\|ref\|XP_002270485.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic [Vitis vinifera] gi\|297739096\|emb\|CBI28585.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356567660\|ref\|XP_003552035.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|449434955\|ref\|XP_004135261.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|57012986\|sp\|Q9AWA5.2\|GWD1_SOLTU RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related R1 protein; Flags: Precursor gi\|3287270\|emb\|CAA70725.1\| R1 [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|350534602\|ref\|NP_001234405.1\| glucan water dikinase [Solanum lycopersicum] gi\|196122257\|gb\|ACG69788.1\| glucan water dikinase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|384383722\|gb\|AFH88388.1\| alpha-glucan water dikinase [Solanum tuberosum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		991
TAIR\|locus:2019953		1399	SEX1 "STARCH EXCESS 1" [Arabid	0.995	0.705	0.770	0.0
TAIR\|locus:2136027		1278	PWD "phosphoglucan, water diki	0.982	0.762	0.541	3.7e-277
TAIR\|locus:2151089		1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.240	0.198	0.291	2.9e-39
UNIPROTKB\|Q723P7		867	LMOf2365_0430 "Putative phosph	0.087	0.100	0.272	3.4e-08
TIGR_CMR\|BA_3116		868	BA_3116 "phosphoenolpyruvate s	0.071	0.081	0.253	1.3e-05
TIGR_CMR\|DET_0554		758	DET_0554 "phosphoenolpyruvate	0.143	0.187	0.276	0.00076
ASPGD\|ASPL0000006943		911	pdkA [Emericella nidulans (tax	0.188	0.205	0.255	0.00079

TAIR\|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3996 (1411.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 764/991 (77%), Positives = 867/991 (87%)

Query:     1 MPAGSVSLSGAVETKFTTSSLADLPYQVQSXXXXXXXXGYVGMPFVLQSGGNWIKNKGSD 60
             +P  S+ + GAV+TK T +S  DLP  VQ+         Y GMPFVL +G  WIKN  SD
Sbjct:   413 LPPNSLPVRGAVDTKLTITS-TDLPSPVQTFELEIEGDSYKGMPFVLNAGERWIKNNDSD 471

Query:    61 FYVDFSYESKQVQQDFGDGKGTAKALLEKIAGLEIEAQKSFMHRFNIAADLIQEAKEAGE 120
             FYVDF+ E K VQ+D+GDGKGTAK LL+KIA LE EAQKSFMHRFNIAADL+ EAK AG+
Sbjct:   472 FYVDFAKEEKHVQKDYGDGKGTAKHLLDKIADLESEAQKSFMHRFNIAADLVDEAKSAGQ 531

Query:   121 LGFAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLQNVYISNPECREIVRMIL 180
             LGFAGILVWMRFMATRQL+WNKNYNVKPREISKAQDRLTDLLQ+VY S PE RE++RMI+
Sbjct:   532 LGFAGILVWMRFMATRQLVWNKNYNVKPREISKAQDRLTDLLQDVYASYPEYRELLRMIM 591

Query:   181 STVGRGGEGDVGQRIRDEILVIQRNNNCKGGMMEEWHQKLHNNTSPDDVIICQALIDYIK 240
             STVGRGGEGDVGQRIRDEILVIQR N+CKGG+MEEWHQKLHNNTSPDDV+ICQAL+DYIK
Sbjct:   592 STVGRGGEGDVGQRIRDEILVIQRKNDCKGGIMEEWHQKLHNNTSPDDVVICQALMDYIK 651

Query:   241 SDFDISAYWKTLNDNGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGNYMRTLKAVHSG 300
             SDFD+S YWKTLNDNGITKERLLSYDRAIHSEPNFR +QKDGLLRDLG+YMRTLKAVHSG
Sbjct:   652 SDFDLSVYWKTLNDNGITKERLLSYDRAIHSEPNFRGEQKDGLLRDLGHYMRTLKAVHSG 711

Query:   301 ADLESAITNCLGYRSEGQGFMVGVQINPIPNLPSGFPELLQFVSEHVEDRNVEALLEGLL 360
             ADLESAI NC+GY+ +G+GFMVGVQINP+  LPSG+P+LL+FV EHVE++NVE LLEGLL
Sbjct:   712 ADLESAIQNCMGYQDDGEGFMVGVQINPVSGLPSGYPDLLRFVLEHVEEKNVEPLLEGLL 771

Query:   361 EARQEIRPLLFKHNDRLKDLLFLDIALESSVRTAIEKGYEELNEAGPEKIMYFVSLILEN 420
             EARQE+RPLL K +DRLKDLLFLD+AL+S+VRTAIE+GYE+LN+AGPEKIMYF+SL+LEN
Sbjct:   772 EARQELRPLLLKSHDRLKDLLFLDLALDSTVRTAIERGYEQLNDAGPEKIMYFISLVLEN 831

Query:   421 LALSLDDNEDLIYCLKGWSNALSMSKSKSDNWALFAKSVLDRTRLALASKADWYQKVLQP 480
             LALS DDNEDLIYCLKGW  AL M KSK D+WAL+AKSVLDR+RLALASKA+ Y ++LQP
Sbjct:   832 LALSSDDNEDLIYCLKGWQFALDMCKSKKDHWALYAKSVLDRSRLALASKAERYLEILQP 891

Query:   481 SAEYLGTLLSVDKWAVDIFTEEMIRXXXXXXXXXXXNRLDPVLRKTASLGSWQVISPVEV 540
             SAEYLG+ L VD+ AV IFTEE+IR           NRLDPVLRKTA+LGSWQVISPVEV
Sbjct:   892 SAEYLGSCLGVDQSAVSIFTEEIIRAGSAAALSSLVNRLDPVLRKTANLGSWQVISPVEV 951

Query:   541 FGYVAVVDELLAVQDKSYDRPTILLARRVKGEEEIPDGTVAVLTADMPDVLSHVSVRARN 600
              GYV VVDELL VQ+K+YDRPTI++A RV+GEEEIPDG VAVLT DMPDVLSHVSVRARN
Sbjct:   952 VGYVIVVDELLTVQNKTYDRPTIIVANRVRGEEEIPDGAVAVLTPDMPDVLSHVSVRARN 1011

Query:   601 CKVCFATCFDPNILADLQSNEGKMLHLKPTSADIAYSVVEGSELQDSSSANLKEEDGPSS 660
              K+CFATCFD  IL+DLQ  +GK+L L+PTSAD+ Y  V  SEL   SS NL  ED P S
Sbjct:  1012 GKICFATCFDSGILSDLQGKDGKLLSLQPTSADVVYKEVNDSELSSPSSDNL--EDAPPS 1069

Query:   661 SVALVKKQFAGRYAITSDEFTGELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVL 720
              ++LVKKQFAGRYAI+S+EFT +LVGAKSRNI YLKGKVPSW+GIPTSVALPFGVFEKV+
Sbjct:  1070 -ISLVKKQFAGRYAISSEEFTSDLVGAKSRNIGYLKGKVPSWVGIPTSVALPFGVFEKVI 1128

Query:   721 SDNINQAVAEKLQILKQKLGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPG 780
             S+  NQAV +KL +LK+ L E D  AL+EIR+T+L + AP +LV+ELK+ MKSS MPWPG
Sbjct:  1129 SEKANQAVNDKLLVLKKTLDEGDQGALKEIRQTLLGLVAPPELVEELKSTMKSSDMPWPG 1188

Query:   781 DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHT 840
             DEGEQRWEQAW AIKKVWASKWNERA+FSTR+VKLDH+YLCMAVLVQE+INADYAFVIHT
Sbjct:  1189 DEGEQRWEQAWAAIKKVWASKWNERAYFSTRKVKLDHDYLCMAVLVQEVINADYAFVIHT 1248

Query:   841 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRR 900
             TNPSSGDSSEIYAEVVKGLGETLVGAYPGR+LSF+CKKN+L  P VLGYPSKPIGLFIRR
Sbjct:  1249 TNPSSGDSSEIYAEVVKGLGETLVGAYPGRSLSFICKKNNLDSPLVLGYPSKPIGLFIRR 1308

Query:   901 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAG 960
             SIIFRSDSNGEDLEGYAGAGLYDSVPMDE ++VVLDY++D LITD  FQ+ +LS IARAG
Sbjct:  1309 SIIFRSDSNGEDLEGYAGAGLYDSVPMDEEDQVVLDYTTDPLITDLSFQKKVLSDIARAG 1368

Query:   961 CEIEELFGSAQDIEGVVRDGKIYVVQTRPQM 991
               IE+L+G+AQDIEGV+RDGK+YVVQTRPQ+
Sbjct:  1369 DAIEKLYGTAQDIEGVIRDGKLYVVQTRPQV 1399

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005983 "starch catabolic process" evidence=IMP

GO:0050521 "alpha-glucan, water dikinase activity" evidence=IMP;TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR\|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q723P7 LMOf2365_0430 "Putative phosphoenolpyruvate synthase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_3116 BA_3116 "phosphoenolpyruvate synthase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000006943 pdkA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LPT9	GWD1_CITRE	2, ., 7, ., 9, ., 4	0.9868	1.0	0.6718	N/A	no
Q9AWA5	GWD1_SOLTU	2, ., 7, ., 9, ., 4	0.7860	0.9969	0.6748	N/A	no
Q9SAC6	GWD1_ARATH	2, ., 7, ., 9, ., 4	0.7840	0.9959	0.7055	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.9.4	0.991
3rd Layer	2.7.9	0.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.X.5281.1	annotation not avaliable (1393 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VII.2145.1	disproportionating enzyme (EC-2.4.1.25) (523 aa)	•	•	0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		991
pfam01326		324	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE	2e-34
TIGR01418		782	TIGR01418, PEP_synth, phosphoenolpyruvate synthase	4e-16
PRK06464		795	PRK06464, PRK06464, phosphoenolpyruvate synthase;	1e-14
COG0574		740	COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva	3e-10
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	3e-07
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	1e-05

>gnl\|CDD\|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Back alignment and domain information

 Score =  134 bits (339), Expect = 2e-34
 Identities = 88/335 (26%), Positives = 135/335 (40%), Gaps = 62/335 (18%)

Query: 681 TGELVGAKSRNIAYL-KGKVPSWIGIPTSVALPFGVFEKVLSDN-INQAVAEKLQILKQK 738
             +LVG K+ N+A L +  +P    +P    +    F + L +N + + +   L+ L   
Sbjct: 3   DVDLVGGKAANLAELARAGLP----VPPGFVITTEAFRRFLEENGLREEILSLLRPLLLS 58

Query: 739 LGEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSG--MPW-----------PGDE--G 783
                 +A   IRE +L    P++LV+ L   +   G   P            P     G
Sbjct: 59  DRSSLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVRSSATAEDLPEASFAG 118

Query: 784 EQ-------RWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAF 836
           +          EQ   AIK VWAS ++ RA    +   +D E + MAV+VQ +++AD + 
Sbjct: 119 QYDTYLNVNGLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASG 178

Query: 837 VIHTTNPSSGDSSEIYAEVVKGLGETLV-GAYPGRALSFVCKKNDLKYPRVLGYPSKPIG 895
           V  T +PS+GD   +  E V GLGE +V G         V + +     R LG   K + 
Sbjct: 179 VAFTRDPSTGDRDLVVIEAVWGLGEAVVSGEVTPDTFV-VSRDDGTVRERELG--QKEVA 235

Query: 896 LFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSS 955
           L +                          VP +     VL        TD   Q+     
Sbjct: 236 LVLEGGGTVEVP-----------------VPEERRSAPVL--------TDAQLQE----- 265

Query: 956 IARAGCEIEELFGSAQDIEGVVRDGKIYVVQTRPQ 990
           +A     +E  FGS QDIE  +  G++Y++Q RP 
Sbjct: 266 LADLAKRLEAHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324

>gnl\|CDD\|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase	Back alignment and domain information

>gnl\|CDD\|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		991
PRK06464		795	phosphoenolpyruvate synthase; Validated	100.0
PRK06241		871	phosphoenolpyruvate synthase; Validated	100.0
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	100.0
PF01326		327	PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate	100.0
PRK05878		530	pyruvate phosphate dikinase; Provisional	100.0
COG0574		740	PpsA Phosphoenolpyruvate synthase/pyruvate phospha	100.0
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	100.0
PRK09279		879	pyruvate phosphate dikinase; Provisional	100.0
PRK05849		783	hypothetical protein; Provisional	99.93
PLN02784		894	alpha-amylase	98.86
PLN02784		894	alpha-amylase	98.79
PRK05849		783	hypothetical protein; Provisional	96.34
PRK08296		603	hypothetical protein; Provisional	96.1
PF00391		80	PEP-utilizers: PEP-utilising enzyme, mobile domain	95.55
PRK06241		871	phosphoenolpyruvate synthase; Validated	95.19
PRK05865		854	hypothetical protein; Provisional	93.81
PRK05878		530	pyruvate phosphate dikinase; Provisional	93.65
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	93.6
PRK06354		590	pyruvate kinase; Provisional	93.41
PRK06464		795	phosphoenolpyruvate synthase; Validated	93.0
PRK09279		879	pyruvate phosphate dikinase; Provisional	93.0
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	92.18
COG3848		111	Phosphohistidine swiveling domain [Signal transduc	90.33
PRK03955		131	hypothetical protein; Reviewed	88.67
PRK11377		473	dihydroxyacetone kinase subunit M; Provisional	87.81
PRK11177		575	phosphoenolpyruvate-protein phosphotransferase; Pr	86.03
TIGR01417		565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	83.43
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	81.39
PRK11061		748	fused phosphoenolpyruvate-protein phosphotransfera	80.73

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Probab=100.00  E-value=1.2e-48  Score=477.40  Aligned_cols=292  Identities=25%  Similarity=0.386  Sum_probs=240.0

Q ss_pred             ccccccccccC---cccccHHHHHHHHHHhcCC-CcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHH
Q 001959          671 GRYAITSDEFT---GELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA  746 (991)
Q Consensus       671 ~~~vl~l~e~~---~~~vGgKAanLa~L~~~~p-~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~  746 (991)
                      .+++++|.++.   ...+||||+||++|++.++ .|++||+|||||+++|++||+.+   ++.+.|..++..++..++..
T Consensus         4 ~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~~   80 (795)
T PRK06464          4 MKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVDA   80 (795)
T ss_pred             CceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHHH
Confidence            45788888776   3679999999999998655 58999999999999999999988   77778888777777667654


Q ss_pred             H----HHHHHHHHcCCCcHHHHHHHHHHHHccC----------------C--CCCCCCCcc-------hHHHHHHHHHHH
Q 001959          747 L----REIRETVLQMKAPNQLVQELKTEMKSSG----------------M--PWPGDEGEQ-------RWEQAWMAIKKV  797 (991)
Q Consensus       747 L----~~Ir~~I~~~~lP~eL~~eL~~a~~ssg----------------~--~~~g~~G~~-------~~e~l~~AIK~V  797 (991)
                      +    ++||++|++.++|+++.++|.++++..+                .  +..+|+|++       +.+++.+|||+|
T Consensus        81 l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~v  160 (795)
T PRK06464         81 LAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKEC  160 (795)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHHH
Confidence            4    7999999999999999999998876421                1  234567764       479999999999


Q ss_pred             HHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEE
Q 001959          798 WASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFV  875 (991)
Q Consensus       798 WAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~  875 (991)
                      |||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.+++.++++|+++|||||+||+|.+ +||+|.
T Consensus       161 ~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~~  239 (795)
T PRK06464        161 FASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEFY  239 (795)
T ss_pred             HHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEEE
Confidence            999999999999999999999999999999999999  99999999999999999999999999999999986 899999


Q ss_pred             EecCCCC--CccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHH
Q 001959          876 CKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSIL  953 (991)
Q Consensus       876 v~K~~~~--~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll  953 (991)
                      ++|.+..  .+.++   ++.++.| +..+++.  ..|       +.|+ ..++++++.+      +.|+|+|++     +
T Consensus       240 v~~~~~~~~~~~i~---~~~i~~K-~~~~~~~--~~~-------~~~~-~~~~~~~~~~------~~~~L~~~~-----l  294 (795)
T PRK06464        240 VHKPTLKAGKPAIV---RRTLGSK-KIKMVYD--DGG-------EHGV-KTVDVPEEER------NRFSLTDEE-----V  294 (795)
T ss_pred             Eeccccccccccee---eeecccc-ceeeeec--cCC-------CCce-eEEeCCHHHh------hccCCCHHH-----H
Confidence            9987632  11122   3444443 2223322  111       1222 3456665443      689999988     6


Q ss_pred             HHHHHHHHHHHHHcCCceEEEEEEEC--CeEEEEeeccCC
Q 001959          954 SSIARAGCEIEELFGSAQDIEGVVRD--GKIYVVQTRPQM  991 (991)
Q Consensus       954 ~~La~lg~~IE~~fG~PQDIEwai~d--g~LyILQaRP~v  991 (991)
                      ++|++++.+||++||+|||||||+++  |+|||||+||++
T Consensus       295 ~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPit  334 (795)
T PRK06464        295 LELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPET  334 (795)
T ss_pred             HHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeeccc
Confidence            99999999999999999999999987  999999999974

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK05865 hypothetical protein; Provisional	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK03955 hypothetical protein; Reviewed	Back alignment and domain information

>PRK11377 dihydroxyacetone kinase subunit M; Provisional	Back alignment and domain information

>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional	Back alignment and domain information

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		991
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	3e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794	Back alignment and structure

 Score = 95.7 bits (238), Expect = 3e-20
 Identities = 74/349 (21%), Positives = 129/349 (36%), Gaps = 69/349 (19%)

Query: 683 ELVGAKSRNIAYLKGKV-PSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGE 741
           E VG K+ ++  +  ++    + +P   A     +   L+ N    ++E++     KL  
Sbjct: 18  ERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDV 74

Query: 742 EDHSALRE----IRETVLQMKAPNQLVQELKTEMKSSGMPWPGDE--------------- 782
           ED + L      IR+ +L    P QL  E++           G +               
Sbjct: 75  EDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLP 134

Query: 783 -----GEQR-------WEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEII 830
                G+Q         +    A+  V+AS +N+RA         +H+ + ++  VQ ++
Sbjct: 135 DASFAGQQETFLNINGLDNVKEAMHHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMV 194

Query: 831 NADYAF--VIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRAL--SFVCKKNDLK--YP 884
            +D     V+ T +  SG    ++     GLGE +V    G      F   K  LK   P
Sbjct: 195 RSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQ---GAVNPDEFYVFKPTLKAGKP 251

Query: 885 RVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLIT 944
            +L    K +G    + I       G+ +           VP ++  +          IT
Sbjct: 252 AIL---RKTMGSKHIKMIFTDKAEAGKSVT-------NVDVPEEDRNR--------FSIT 293

Query: 945 DGHFQQSILSSIARAGCEIEELFGSAQDIEGVV--RDGKIYVVQTRPQM 991
           D    +     +A     IE+ +G   DIE      DGK+Y++Q RP+ 
Sbjct: 294 DEEITE-----LAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPET 337

PyMOL of 2ols

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		991
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	100.0
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	100.0
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	100.0
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	100.0
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	100.0
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	95.75
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	94.97
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	94.57
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	93.53
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	93.27
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	92.59
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	91.06
1zym_A		258	Enzyme I; phosphotransferase; 2.50A {Escherichia c	90.54
2wqd_A		572	Phosphoenolpyruvate-protein phosphotransferase; ki	85.67
2hwg_A		575	Phosphoenolpyruvate-protein phosphotransferase; en	84.48

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

Probab=100.00  E-value=1.3e-47  Score=468.91  Aligned_cols=293  Identities=25%  Similarity=0.367  Sum_probs=235.6

Q ss_pred             ccccccccccCc---ccccHHHHHHHHHHhcCC-CcccCCCceeeChhhHHHHHhhhchHHHHHHHHHHHhhcCCCChHH
Q 001959          671 GRYAITSDEFTG---ELVGAKSRNIAYLKGKVP-SWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKLGEEDHSA  746 (991)
Q Consensus       671 ~~~vl~l~e~~~---~~vGgKAanLa~L~~~~p-~g~~VP~GfvIpfgafe~~L~~~~n~~L~~~I~~l~~~l~~~d~~~  746 (991)
                      ++|+++|++.+.   .++|||++||++|.+.++ .|++||+||+||+++|++|++.+   ++++.|...++.++..+...
T Consensus         3 ~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~---~l~~~i~~~l~~l~~~~~~~   79 (794)
T 2ols_A            3 DNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDVEDVAE   79 (794)
T ss_dssp             -CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGG---GHHHHHHHHHHSCCTTSHHH
T ss_pred             CCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhC---ChHHHHHHHHHhhcccCHHH
Confidence            568999998764   789999999999986432 58999999999999999999987   78888988888887777654


Q ss_pred             H----HHHHHHHHcCCCcHHHHHHHHHHHHccC------------------CCC--CCCCCcc-------hHHHHHHHHH
Q 001959          747 L----REIRETVLQMKAPNQLVQELKTEMKSSG------------------MPW--PGDEGEQ-------RWEQAWMAIK  795 (991)
Q Consensus       747 L----~~Ir~~I~~~~lP~eL~~eL~~a~~ssg------------------~~~--~g~~G~~-------~~e~l~~AIK  795 (991)
                      |    .++|++|++.++|+++.++|.++++..+                  .+.  .+|+|++       ++++++.|||
T Consensus        80 l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~g~~~l~~Aik  159 (794)
T 2ols_A           80 LARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAMH  159 (794)
T ss_dssp             HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEECSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCCCHHHHHHHHH
Confidence            4    7899999999999999999988875421                  112  3456654       5899999999


Q ss_pred             HHHHcCCChhHHHHHHhcCCCcccccceeEEEEeeccC--eeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCcee
Q 001959          796 KVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINAD--YAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALS  873 (991)
Q Consensus       796 ~VWAS~fseRA~~YRr~~Gi~~~~v~MAVLVQeMV~ad--~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~  873 (991)
                      +||||+||+||+.||+.+|++++++.|||+||+||+++  .|||+||+||.||+++.++|+++|||||.||+|.+ +|+.
T Consensus       160 ~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd~  238 (794)
T 2ols_A          160 HVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPDE  238 (794)
T ss_dssp             HHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCEE
T ss_pred             HHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCcE
Confidence            99999999999999999999999999999999999999  99999999999999999999999999999999987 8999


Q ss_pred             EEEecCCCC--CccccCCCCCccccccceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHH
Q 001959          874 FVCKKNDLK--YPRVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQS  951 (991)
Q Consensus       874 f~v~K~~~~--~~~vl~~~sk~ig~~~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~  951 (991)
                      |.++|.+..  ...++   .+.++.| +..+++..  +++      .+|.+..+++++..+      +.++|+|++    
T Consensus       239 ~~v~kp~l~~~~~~i~---~~~~~~k-~~~~~~~~--~~~------~g~~~~~~~~p~~~~------~~~~L~d~~----  296 (794)
T 2ols_A          239 FYVFKPTLKAGKPAIL---RKTMGSK-HIKMIFTD--KAE------AGKSVTNVDVPEEDR------NRFSITDEE----  296 (794)
T ss_dssp             EEEEHHHHHTTSCCEE---EEECCCC-CEEEEECS--CCS------SSTTEEEEECCHHHH------TSCSSCHHH----
T ss_pred             EEEeccccccCCccee---eeecccc-ceeEEecc--ccc------CCCeeEEEeCCHHHh------cCCCCCHHH----
Confidence            999983210  01222   2233332 23344432  111      123245667776544      689999988    


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEEEEEECC--eEEEEeeccC
Q 001959          952 ILSSIARAGCEIEELFGSAQDIEGVVRDG--KIYVVQTRPQ  990 (991)
Q Consensus       952 ll~~La~lg~~IE~~fG~PQDIEwai~dg--~LyILQaRP~  990 (991)
                       +.+|++++..||++||.|||||||++++  +|||||+||+
T Consensus       297 -~~~L~~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~  336 (794)
T 2ols_A          297 -ITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE  336 (794)
T ss_dssp             -HHHHHHHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             -HHHHHHHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCc
Confidence             6899999999999999999999999976  9999999996

PyMOL of 2ols

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A	Back alignment and structure

>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A	Back alignment and structure

>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		991
d1kbla3		375	d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N	7e-13
d1h6za3		405	d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N	2e-11
d1vbga3		380	d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N	5e-08

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

 Score = 68.9 bits (167), Expect = 7e-13
 Identities = 41/325 (12%), Positives = 91/325 (28%), Gaps = 21/325 (6%)

Query: 683 ELVGAKSRNIAYLKG---KVPSWIGIPTSVALPFGVFEKVLSDNINQAVAEKLQILKQKL 739
            L+G K  N+A +      +P    + T     +    K ++  I   + E +  L++  
Sbjct: 16  NLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQDQIFEAITWLEELN 75

Query: 740 GEEDHSALREIRETVLQMKAPNQLVQELKTEMKSSGMPWPGDEGEQRWEQAWMA------ 793
           G++       +  +V      +                      ++     +        
Sbjct: 76  GKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKKTGNPRFAYDSYRRF 135

Query: 794 -------IKKVWASKWNERAFFSTRRVKLDHEYLCMAVLVQEIINADYAFVIHTTN--PS 844
                  + +V  S + +          +  +    A  ++E+     A      N    
Sbjct: 136 IQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEKFKAVYKEAMNGEEF 195

Query: 845 SGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLFIRRSIIF 904
             +  +     VK +  +                 D      +             + + 
Sbjct: 196 PQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTMVFGNKGETSGTGVA 255

Query: 905 RSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIE 964
            + +     +G  G  L ++   D    V       +L  D          +A     +E
Sbjct: 256 FTRNPSTGEKGIYGEYLINAQGEDVVAGVRTPQPITQLENDMPDCYKQFMDLAMK---LE 312

Query: 965 ELFGSAQDIEGVVRDGKIYVVQTRP 989
           + F   QD+E  + +GK+Y +QTR 
Sbjct: 313 KHFRDMQDMEFTIEEGKLYFLQTRN 337

PyMOL of d1kbla3

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405	Back information, alignment and structure

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		991
d1h6za3		405	Pyruvate phosphate dikinase, N-terminal domain {Tr	100.0
d1vbga3		380	Pyruvate phosphate dikinase, N-terminal domain {Ma	99.97
d1kbla3		375	Pyruvate phosphate dikinase, N-terminal domain {Cl	99.96
d1zyma2		124	N-terminal domain of enzyme I of the PEP:sugar pho	97.6
d1h6za2		132	Pyruvate phosphate dikinase, central domain {Trypa	96.14
d1vbga2		135	Pyruvate phosphate dikinase, central domain {Maize	95.64
d1kbla2		133	Pyruvate phosphate dikinase, central domain {Clost	93.36
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	92.83

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=2e-35  Score=332.75  Aligned_cols=269  Identities=20%  Similarity=0.202  Sum_probs=178.7

Q ss_pred             ccccccc----ccCc---ccccHHHHHHHHHHhcCCCcccCCCceeeChhhHHHHHhhh-chHHHHHHHHHHHhhcCC--
Q 001959          672 RYAITSD----EFTG---ELVGAKSRNIAYLKGKVPSWIGIPTSVALPFGVFEKVLSDN-INQAVAEKLQILKQKLGE--  741 (991)
Q Consensus       672 ~~vl~l~----e~~~---~~vGgKAanLa~L~~~~p~g~~VP~GfvIpfgafe~~L~~~-~n~~L~~~I~~l~~~l~~--  741 (991)
                      +|+++|+    +.+.   .+||||++||++|.+   .|+|||+|||||+.+|++||+.+ .++.++++|...+..++.  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~~   80 (405)
T d1h6za3           4 KWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKEM   80 (405)
T ss_dssp             CCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCcccCCcchHhhccHHHHHHHHHHH---CcCCCCCCEEehHHHHHHHHHcCCCcHHHHHHHHHHHHhhhHHh
Confidence            5778875    4443   789999999999998   69999999999999999999886 234555555443322110  


Q ss_pred             ----CC--------------h---HH--------H--HHHHHHHHcCCCcHHHHHHHHHHHHc------cCCCCC-----
Q 001959          742 ----ED--------------H---SA--------L--REIRETVLQMKAPNQLVQELKTEMKS------SGMPWP-----  779 (991)
Q Consensus       742 ----~d--------------~---~~--------L--~~Ir~~I~~~~lP~eL~~eL~~a~~s------sg~~~~-----  779 (991)
                          ++              .   ..        +  ...+.+.....-++.........+..      .+.+..     
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  160 (405)
T d1h6za3          81 GAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEEA  160 (405)
T ss_dssp             CCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTSTT
T ss_pred             hhhhccccchhhhhcccccchhhhhhhhhhhhhhhhhhhHHHHHHhcccchhhHHHHHHHHHHhhcccccccchhHHHHH
Confidence                00              0   00        0  11222222222222222222111110      011000     


Q ss_pred             ------------------------------------C-CCCcchHHHHHHHHHHHHHcCCChhHHHHHHhcCCCcccccc
Q 001959          780 ------------------------------------G-DEGEQRWEQAWMAIKKVWASKWNERAFFSTRRVKLDHEYLCM  822 (991)
Q Consensus       780 ------------------------------------g-~~G~~~~e~l~~AIK~VWAS~fseRA~~YRr~~Gi~~~~v~M  822 (991)
                                                          + +.....++++..+|+.||+|+|++||..||...+++++ ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~-~~~  239 (405)
T d1h6za3         161 LSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGL-LGT  239 (405)
T ss_dssp             THHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSC-CCC
T ss_pred             HHHHHHhccccccccCcHHHHHHHHHHHHHhhhhhcCCcccccchHHhHHHHHHHHhhhcCchHHHHHHhcCccch-hhh
Confidence                                                0 00012468999999999999999999999999999975 355


Q ss_pred             eeEEEEee-----ccCeeEEEEeCCCCCCCCCeEEEEEeccCCccccccccCCceeEEEecCCCCCccccCCCCCccccc
Q 001959          823 AVLVQEII-----NADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLKYPRVLGYPSKPIGLF  897 (991)
Q Consensus       823 AVLVQeMV-----~ad~SGVlfT~nP~tgd~~~i~Ieav~GLGE~LVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~ig~~  897 (991)
                      ++++|.|+     .+..+||+||.||.+|+.+.+.+++++|+|+.+|+|.. +|+.|..++....   ..          
T Consensus       240 ~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~~~~---~~----------  305 (405)
T d1h6za3         240 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLSLRW---AK----------  305 (405)
T ss_dssp             CEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHHHHH---HT----------
T ss_pred             hheeeeeeecccccccccccccccCCCCCCCceeeEecccCcceeeccCcc-CCceeeeecccch---hh----------
Confidence            66665555     56689999999999999999999999999999999986 6776655443210   00          


Q ss_pred             cceeEEEecCCCCCccccccCCcccccccCchhhHhhhcccCCcccCcccchHHHHHHHHHHHHHHHHHcCCceEEEEEE
Q 001959          898 IRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEAEKVVLDYSSDRLITDGHFQQSILSSIARAGCEIEELFGSAQDIEGVV  977 (991)
Q Consensus       898 ~~~~~i~~s~snGedle~~agaGl~~~v~~~~~~~~~vdys~~p~LtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEwai  977 (991)
                                          ..+      .... ....++...+.+++++     +++|+++|.+||++||+|||||||+
T Consensus       306 --------------------~~~------~~~~-~~~~~~~~~~~l~~e~-----~~~La~l~~~iE~~fg~PqDIEWAi  353 (405)
T d1h6za3         306 --------------------AHG------VGEE-ERRKRYPSMEEAMPEN-----YRLLCDVRKRLENHYRDMQDLEFTV  353 (405)
T ss_dssp             --------------------TSS------CCHH-HHHHHSCCHHHHSHHH-----HHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred             --------------------ccc------ccee-cccccccchhhcCHHH-----HHHHHHHHHHHHHHcCCCcceEEEE
Confidence                                000      0000 0011122333445555     6899999999999999999999999


Q ss_pred             ECCeEEEEeeccC
Q 001959          978 RDGKIYVVQTRPQ  990 (991)
Q Consensus       978 ~dg~LyILQaRP~  990 (991)
                      ++|+|||||+||.
T Consensus       354 ~dg~L~ILQaRPv  366 (405)
T d1h6za3         354 QDGRLWLLQCRNG  366 (405)
T ss_dssp             ETTEEEEEEEEEC
T ss_pred             ECCEEEEEEccCC
Confidence            9999999999995

PyMOL of d1h6za3

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure