Citrus Sinensis ID: 001968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------99
MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR
cHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHEcEEEEEcHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHEEccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEc
MDDLEKAILFsfdesgaiDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCElvdgkssmrvlespAFIRNKLAQVLVTLIYFEYPLIWSSVFVdflpqlnkgsmVIDMFCRVLNSLDdelisldyprtaDELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILAdglpeqfrGAAVGCVLAVVSkrmdpqskLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATmkslsplkeeqRLHAGQILEVILTQIrydpmyrnnldvldkigiEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLlqtklpchsnrLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLdergihhpnvhvsRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMnyaskelsgsedgsHIFEAIGLLigmedvppekqsdylsslLTPLCQQVQTMLLdakmlnpeestaKFANIQQIIMAINALSKGFNerlvtssrpaigLMFKQTLDVLLQILVvfpkveplrcKVTSFIHRMVDtlgasvfpYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGrifniiprdafpsgpgtnteEIREVQELQRTLYTFLHVIAThdlssvflspksrgyldpIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDwcarpfveekvpgfQSFMIEAFAMNCCLysvldksfefgdantLVLFGEIVLAQKVMYEKFGNDFLVHFVtkgfpsahcppdlaeqYCQKLQGNDIKALKSFYQSLIEKLRVQqngslvfr
MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSseernliresvFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKelsgsedgSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEklrvqqngslvfr
MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFaniqqiimainaLSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR
*******ILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGE********TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYA**********SHIFEAIGLLIGMEDV******DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFP********EIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRV*********
MDDLEKAILFS***************VNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDG******LESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPR**DELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEE***TGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS*********GSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQ****************KFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQ*******
MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR
MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPM********DKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSM******LSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQ****VF*
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MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQQNGSLVFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query989 2.2.26 [Sep-21-2011]
Q7PC79988 Exportin-T OS=Arabidopsis yes no 0.998 1.0 0.751 0.0
Q8H3A7980 Exportin-T OS=Oryza sativ yes no 0.979 0.988 0.526 0.0
O43592962 Exportin-T OS=Homo sapien yes no 0.942 0.968 0.281 1e-111
Q9CRT8963 Exportin-T OS=Mus musculu yes no 0.942 0.967 0.284 1e-111
Q5RA02962 Exportin-T OS=Pongo abeli yes no 0.942 0.968 0.280 1e-111
Q5SPJ8961 Exportin-T OS=Danio rerio yes no 0.942 0.969 0.282 1e-105
Q2H6R91019 Exportin-T OS=Chaetomium N/A no 0.926 0.898 0.249 2e-75
Q5ASE31031 Exportin-T OS=Emericella yes no 0.938 0.900 0.256 4e-73
O94258978 Exportin-T OS=Schizosacch yes no 0.942 0.952 0.250 5e-73
Q1DY991033 Exportin-T OS=Coccidioide N/A no 0.927 0.887 0.246 5e-71
>sp|Q7PC79|XPOT_ARATH Exportin-T OS=Arabidopsis thaliana GN=PSD PE=2 SV=1 Back     alignment and function desciption
 Score = 1543 bits (3995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 743/989 (75%), Positives = 867/989 (87%), Gaps = 1/989 (0%)

Query: 1   MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
           MDDLE+AI+ SF E+GA+DS LKSQAV +CQQIKETPSIC ICIEKL    +VQVQFWCL
Sbjct: 1   MDDLEQAIVISF-ETGAVDSALKSQAVTYCQQIKETPSICSICIEKLWFSKLVQVQFWCL 59

Query: 61  QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
           QTL +V+RVKY SMS +E++ +R+SVFSM C E++D +++ RV+E P F++NKLAQVL T
Sbjct: 60  QTLQDVLRVKYGSMSLDEQSYVRKSVFSMACLEVIDNENAGRVVEGPPFVKNKLAQVLAT 119

Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
           LIY+EYPLIWSSVF+DF+  L KG++VIDMFCRVLN+LDDELISLDYPRT +E++VAAR+
Sbjct: 120 LIYYEYPLIWSSVFLDFMLHLCKGAVVIDMFCRVLNALDDELISLDYPRTPEEISVAARV 179

Query: 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
           KDAMRQQCV QI RAWYDIVSMY++SD ++   VLDCMRR++SWIDI L+ANDAF+PLLF
Sbjct: 180 KDAMRQQCVPQIARAWYDIVSMYKNSDPDLSATVLDCMRRFVSWIDIGLVANDAFVPLLF 239

Query: 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
           ELIL+DGL EQ RGAA GCVLA+VSKRMDPQSKL LLQTLQISRVFGLVS D +S+LVSK
Sbjct: 240 ELILSDGLSEQVRGAAAGCVLAMVSKRMDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSK 299

Query: 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
           V+ALLTGYA+EVL+C KRLN+E+    S  LLNEVLPSVFYVMQ CEVD+TFSIVQFL G
Sbjct: 300 VSALLTGYAVEVLECHKRLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLG 359

Query: 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
           YV+T+K L  LKE+Q LH  QILEVI  QI YDPMYRNNL+ LDK G+EEEDRM E+RKD
Sbjct: 360 YVSTLKGLPALKEKQLLHITQILEVIRIQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKD 419

Query: 421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
           L VLLR+VGRVAPEVTQ FIRNSLANAV  S++ NVEEVEAAL+LLY+ GESM+EEAM+T
Sbjct: 420 LFVLLRTVGRVAPEVTQHFIRNSLANAVESSSESNVEEVEAALSLLYSFGESMTEEAMKT 479

Query: 481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
           G+G LSEL+PMLL T+ P HS+RLVALVYLE +TRYMKFIQE++QYIP VL AFLD+RG+
Sbjct: 480 GSGCLSELIPMLLTTQFPGHSHRLVALVYLENITRYMKFIQENSQYIPNVLGAFLDDRGL 539

Query: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
           HH N +VSRRA YLFMRVVKLLK+KLVPFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDG
Sbjct: 540 HHQNFYVSRRAGYLFMRVVKLLKSKLVPFIDKILQNLQDTLSQLTTMNFASRELTGTEDG 599

Query: 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ 660
           SHIFEAIG++IG+EDVP EKQSDYLS LLTPLCQQ++  L+ AK+ + E+   K ANIQ 
Sbjct: 600 SHIFEAIGIIIGLEDVPAEKQSDYLSLLLTPLCQQIEAGLVQAKVASSEDFPVKIANIQF 659

Query: 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
            I+AINALSKGFNERLVT+SRP IGLMFKQTLDVLL++L+ FPKVEPLR KVTSFIHRMV
Sbjct: 660 AIVAINALSKGFNERLVTASRPGIGLMFKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMV 719

Query: 721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
           DTLG++VFPYLPKALEQLLA+SEPKEM GF+VLLNQLICKFN+ +HDIL+EV+P +A RI
Sbjct: 720 DTLGSAVFPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRI 779

Query: 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
           FN+IPRD  PS PG  TEE+RE+ ELQR LYTFLHVIATHDLSSVFL+PKSR YLDP+MQ
Sbjct: 780 FNVIPRDGLPSRPGAVTEEMRELIELQRMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQ 839

Query: 841 LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVL 900
           L+L TSCNHKD  VRKACVQIFI+LIKDWCA P+ EEKVPGFQ+F+IEAFA NCCLYSVL
Sbjct: 840 LVLNTSCNHKDITVRKACVQIFIKLIKDWCAEPYSEEKVPGFQNFVIEAFATNCCLYSVL 899

Query: 901 DKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ 960
           DKSF F DANT  LFGEI+ AQKVMYEKFGN FL+H ++K FPSAH P DLAEQYCQKLQ
Sbjct: 900 DKSFNFSDANTHALFGEIITAQKVMYEKFGNTFLMHLMSKSFPSAHIPQDLAEQYCQKLQ 959

Query: 961 GNDIKALKSFYQSLIEKLRVQQNGSLVFR 989
           GNDI++LKS+YQSLIE LR+QQNGS VFR
Sbjct: 960 GNDIRSLKSYYQSLIENLRLQQNGSHVFR 988
Probable tRNA nucleus export receptor which regulates tRNA processing and facilitates tRNA translocation across the nuclear pore complex. Is required for proper activity of the shoot apical meristem (SAM) and correct leaf initiation at different developmental stages, and may play a role in floral patterning.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8H3A7|XPOT_ORYSJ Exportin-T OS=Oryza sativa subsp. japonica GN=Os07g0613300 PE=2 SV=1 Back     alignment and function description
>sp|O43592|XPOT_HUMAN Exportin-T OS=Homo sapiens GN=XPOT PE=1 SV=2 Back     alignment and function description
>sp|Q9CRT8|XPOT_MOUSE Exportin-T OS=Mus musculus GN=Xpot PE=2 SV=3 Back     alignment and function description
>sp|Q5RA02|XPOT_PONAB Exportin-T OS=Pongo abelii GN=XPOT PE=2 SV=1 Back     alignment and function description
>sp|Q5SPJ8|XPOT_DANRE Exportin-T OS=Danio rerio GN=xpot PE=3 SV=1 Back     alignment and function description
>sp|Q2H6R9|XPOT_CHAGB Exportin-T OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=LOS1 PE=3 SV=1 Back     alignment and function description
>sp|Q5ASE3|XPOT_EMENI Exportin-T OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=los1 PE=3 SV=1 Back     alignment and function description
>sp|O94258|XPOT_SCHPO Exportin-T OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=los1 PE=1 SV=1 Back     alignment and function description
>sp|Q1DY99|XPOT_COCIM Exportin-T OS=Coccidioides immitis (strain RS) GN=LOS1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query989
255560611988 Exportin-T, putative [Ricinus communis] 0.998 1.0 0.809 0.0
225442110992 PREDICTED: exportin-T [Vitis vinifera] g 1.0 0.996 0.782 0.0
224073696994 predicted protein [Populus trichocarpa] 1.0 0.994 0.760 0.0
356506134986 PREDICTED: exportin-T-like [Glycine max] 0.995 0.998 0.773 0.0
356573302983 PREDICTED: exportin-T-like [Glycine max] 0.993 1.0 0.769 0.0
449447900990 PREDICTED: exportin-T-like [Cucumis sati 1.0 0.998 0.758 0.0
42563175988 protein PAUSED [Arabidopsis thaliana] gi 0.998 1.0 0.751 0.0
30909319988 PAUSED [Arabidopsis thaliana] 0.998 1.0 0.751 0.0
297842005978 hypothetical protein ARALYDRAFT_476390 [ 0.988 1.0 0.730 0.0
224119496941 predicted protein [Populus trichocarpa] 0.948 0.996 0.736 0.0
>gi|255560611|ref|XP_002521319.1| Exportin-T, putative [Ricinus communis] gi|223539397|gb|EEF40987.1| Exportin-T, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1680 bits (4350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/989 (80%), Positives = 898/989 (90%), Gaps = 1/989 (0%)

Query: 1   MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
           MDDLEKAIL SFDESG +DS LKSQAV+FCQQIK+T SICRICIEKL  C +VQVQFWCL
Sbjct: 1   MDDLEKAILISFDESGTVDSSLKSQAVSFCQQIKDTKSICRICIEKLYFCKLVQVQFWCL 60

Query: 61  QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
           QTL EV++VKY  +S EE++ IR+SVFSM C +++D  +++R LE PAFI+NKLAQVLVT
Sbjct: 61  QTLHEVIKVKYALLSLEEKDFIRKSVFSMCCFDVIDDGNAVRFLEGPAFIKNKLAQVLVT 120

Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
           LIYFEYPL+WSSV VDFLP L+KG++VIDMFCRVLN+LDDELISLDYPRT +ELTVA R+
Sbjct: 121 LIYFEYPLVWSSVIVDFLPHLSKGAIVIDMFCRVLNALDDELISLDYPRTLEELTVAGRV 180

Query: 181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
           KDAMRQQCV QIVRAWYDI+SMYR+SD EVC+ VLD MRRYISW+DI LI NDAFIPLLF
Sbjct: 181 KDAMRQQCVGQIVRAWYDIISMYRNSDPEVCSNVLDSMRRYISWVDIGLIVNDAFIPLLF 240

Query: 241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
           ELIL  G  EQ +GAA GC+LAVVSKRMDPQSKL +L++LQISRVF LV+ D ESELVSK
Sbjct: 241 ELILVYGESEQLQGAAAGCILAVVSKRMDPQSKLTILKSLQISRVFALVTGDSESELVSK 300

Query: 301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
           +AAL+TGYA+EVL+C KR+ AE+A   S +LLNEV+PSVFYVMQNCEVDT FSIVQFLSG
Sbjct: 301 IAALITGYAVEVLECYKRVTAEDAKGVSLELLNEVMPSVFYVMQNCEVDTAFSIVQFLSG 360

Query: 361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
           YVATMKSLSPL+E+Q  + GQILEVI TQIRYDP+YRNNLD+LDKIG EEEDRMVE+RKD
Sbjct: 361 YVATMKSLSPLREKQAHYVGQILEVIRTQIRYDPVYRNNLDMLDKIGREEEDRMVEFRKD 420

Query: 421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
           L VLLRSVGRVAPEVTQVFIRNSL +AV  S +RNVEEVEAA++LLYALGES+S+EAMRT
Sbjct: 421 LFVLLRSVGRVAPEVTQVFIRNSLVSAVASSTERNVEEVEAAVSLLYALGESLSDEAMRT 480

Query: 481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
           G+G L ELV MLL T+ PCHSNR+VALVYLET TRYMKF+QE+TQYIP+VL AFLDERGI
Sbjct: 481 GSGLLGELVSMLLSTRFPCHSNRIVALVYLETTTRYMKFVQENTQYIPMVLTAFLDERGI 540

Query: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
           HHPNVHVSRRASYLFMRVVKLLKAKLVPFIE ILQSLQDT+ARFTSM+YAS EL GSEDG
Sbjct: 541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIERILQSLQDTVARFTSMDYASHELFGSEDG 600

Query: 601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQ 660
           SHIFEAIGLLIGMEDVP EKQ+DYLS+LLTPLC QV+ +L++AK+LN +ES  K  NIQQ
Sbjct: 601 SHIFEAIGLLIGMEDVPSEKQADYLSALLTPLCHQVEILLMNAKVLNSDESPGKIINIQQ 660

Query: 661 IIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
           IIMAINALSKGF+ERLVT+SRPAIGLMFKQTLD+LLQILVVFPK+EPLR KVTSFIHRMV
Sbjct: 661 IIMAINALSKGFSERLVTASRPAIGLMFKQTLDILLQILVVFPKIEPLRSKVTSFIHRMV 720

Query: 721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
           DTLGASVFPYLPKALEQLLAE EP+EM GFLVLLNQLICKFNTLVHDI++EVFPAIAGRI
Sbjct: 721 DTLGASVFPYLPKALEQLLAECEPREMVGFLVLLNQLICKFNTLVHDIVEEVFPAIAGRI 780

Query: 781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
           F++IPRDAFPSGPGTNTEEIRE+QELQ+T+YTFLHVIATHDLSSVFLSPKSRGYLD +MQ
Sbjct: 781 FSVIPRDAFPSGPGTNTEEIRELQELQKTMYTFLHVIATHDLSSVFLSPKSRGYLDSLMQ 840

Query: 841 LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVL 900
           +LL+T+CNHKD LVRKACVQIFIRLIKDWC +P+ EEKVPGFQSF+IEAFA NCCL+SVL
Sbjct: 841 MLLHTACNHKDILVRKACVQIFIRLIKDWCVKPYGEEKVPGFQSFIIEAFATNCCLFSVL 900

Query: 901 DKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ 960
           DKSFEF DANT VLFGEIV AQKVMYEKFGNDFL HFV+K F SAHCP +LA+QYCQKLQ
Sbjct: 901 DKSFEFQDANTFVLFGEIVQAQKVMYEKFGNDFL-HFVSKSFQSAHCPQELAQQYCQKLQ 959

Query: 961 GNDIKALKSFYQSLIEKLRVQQNGSLVFR 989
           G+D+K LKSFYQSLIE LR+ QNG+LVFR
Sbjct: 960 GSDLKTLKSFYQSLIENLRLLQNGNLVFR 988

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442110|ref|XP_002273606.1| PREDICTED: exportin-T [Vitis vinifera] gi|297742994|emb|CBI35861.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224073696|ref|XP_002304132.1| predicted protein [Populus trichocarpa] gi|222841564|gb|EEE79111.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356506134|ref|XP_003521842.1| PREDICTED: exportin-T-like [Glycine max] Back     alignment and taxonomy information
>gi|356573302|ref|XP_003554801.1| PREDICTED: exportin-T-like [Glycine max] Back     alignment and taxonomy information
>gi|449447900|ref|XP_004141704.1| PREDICTED: exportin-T-like [Cucumis sativus] gi|449523616|ref|XP_004168819.1| PREDICTED: exportin-T-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42563175|ref|NP_177400.2| protein PAUSED [Arabidopsis thaliana] gi|145327223|ref|NP_001077813.1| protein PAUSED [Arabidopsis thaliana] gi|334183864|ref|NP_001185383.1| protein PAUSED [Arabidopsis thaliana] gi|75140113|sp|Q7PC79.1|XPOT_ARATH RecName: Full=Exportin-T; AltName: Full=Exportin(tRNA); AltName: Full=Protein PAUSED; AltName: Full=tRNA exportin gi|34303902|tpg|DAA01277.1| TPA_exp: exportin-t [Arabidopsis thaliana] gi|332197219|gb|AEE35340.1| protein PAUSED [Arabidopsis thaliana] gi|332197220|gb|AEE35341.1| protein PAUSED [Arabidopsis thaliana] gi|332197221|gb|AEE35342.1| protein PAUSED [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30909319|gb|AAP37047.1| PAUSED [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842005|ref|XP_002888884.1| hypothetical protein ARALYDRAFT_476390 [Arabidopsis lyrata subsp. lyrata] gi|297334725|gb|EFH65143.1| hypothetical protein ARALYDRAFT_476390 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224119496|ref|XP_002331175.1| predicted protein [Populus trichocarpa] gi|222873296|gb|EEF10427.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query989
TAIR|locus:2030280988 PSD "AT1G72560" [Arabidopsis t 0.998 1.0 0.742 0.0
MGI|MGI:1920442963 Xpot "exportin, tRNA (nuclear 0.942 0.967 0.283 1.5e-108
UNIPROTKB|O43592962 XPOT "Exportin-T" [Homo sapien 0.942 0.968 0.280 2.4e-108
UNIPROTKB|J9P2A6962 XPOT "Uncharacterized protein" 0.942 0.968 0.278 8.1e-108
UNIPROTKB|E2R4G4963 XPOT "Uncharacterized protein" 0.942 0.967 0.280 4.4e-107
ZFIN|ZDB-GENE-041210-4971 xpot "exportin, tRNA (nuclear 0.940 0.957 0.283 3.6e-105
UNIPROTKB|E1C593962 XPOT "Uncharacterized protein" 0.943 0.969 0.273 1.2e-104
UNIPROTKB|E1B8Q8961 E1B8Q8 "Uncharacterized protei 0.942 0.969 0.275 3.2e-104
DICTYBASE|DDB_G0283119 1088 xpot "exportin, tRNA" [Dictyos 0.437 0.397 0.312 6.8e-100
RGD|1305562728 Xpot "exportin, tRNA (nuclear 0.620 0.843 0.310 7.9e-78
TAIR|locus:2030280 PSD "AT1G72560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3816 (1348.4 bits), Expect = 0., P = 0.
 Identities = 734/989 (74%), Positives = 857/989 (86%)

Query:     1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQVQFWCL 60
             MDDLE+AI+ SF E+GA+DS LKSQAV +CQQIKETPSIC ICIEKL    +VQVQFWCL
Sbjct:     1 MDDLEQAIVISF-ETGAVDSALKSQAVTYCQQIKETPSICSICIEKLWFSKLVQVQFWCL 59

Query:    61 QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
             QTL +V+RVKY SMS +E++ +R+SVFSM C E++D +++ RV+E P F++NKLAQVL T
Sbjct:    60 QTLQDVLRVKYGSMSLDEQSYVRKSVFSMACLEVIDNENAGRVVEGPPFVKNKLAQVLAT 119

Query:   121 LIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARI 180
             LIY+EYPLIWSSVF+DF+  L KG++VIDMFCRVLN+LDDELISLDYPRT +E++VAAR+
Sbjct:   120 LIYYEYPLIWSSVFLDFMLHLCKGAVVIDMFCRVLNALDDELISLDYPRTPEEISVAARV 179

Query:   181 KDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLF 240
             KDAMRQQCV QI RAWYDIVSMY++SD ++   VLDCMRR++SWIDI L+ANDAF+PLLF
Sbjct:   180 KDAMRQQCVPQIARAWYDIVSMYKNSDPDLSATVLDCMRRFVSWIDIGLVANDAFVPLLF 239

Query:   241 ELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSK 300
             ELIL+DGL EQ RGAA GCVLA+VSKRMDPQSKL LLQTLQISRVFGLVS D +S+LVSK
Sbjct:   240 ELILSDGLSEQVRGAAAGCVLAMVSKRMDPQSKLPLLQTLQISRVFGLVSGDVDSDLVSK 299

Query:   301 VAALLTGYAMEVLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSG 360
             V+ALLTGYA+EVL+C KRLN+E+    S  LLNEVLPSVFYVMQ CEVD+TFSIVQFL G
Sbjct:   300 VSALLTGYAVEVLECHKRLNSEDTKAVSMDLLNEVLPSVFYVMQKCEVDSTFSIVQFLLG 359

Query:   361 YVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKD 420
             YV+T+K L  LKE+Q LH  QILEVI  QI YDPMYRNNL+ LDK G+EEEDRM E+RKD
Sbjct:   360 YVSTLKGLPALKEKQLLHITQILEVIRIQICYDPMYRNNLNSLDKTGLEEEDRMSEFRKD 419

Query:   421 LLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRT 480
             L VLLR+VGRVAPEVTQ FIRNSLANAV  S++ NVEEVEAAL+LLY+ GESM+EEAM+T
Sbjct:   420 LFVLLRTVGRVAPEVTQHFIRNSLANAVESSSESNVEEVEAALSLLYSFGESMTEEAMKT 479

Query:   481 GAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGI 540
             G+G LSEL+PMLL T+ P HS+RLVALVYLE +TRYMKFIQE++QYIP VL AFLD+RG+
Sbjct:   480 GSGCLSELIPMLLTTQFPGHSHRLVALVYLENITRYMKFIQENSQYIPNVLGAFLDDRGL 539

Query:   541 HHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDG 600
             HH N +VSRRA YLFMRVVKLLK+KLVPFI+ ILQ+LQDT+++ T+MN+AS+EL+G+EDG
Sbjct:   540 HHQNFYVSRRAGYLFMRVVKLLKSKLVPFIDKILQNLQDTLSQLTTMNFASRELTGTEDG 599

Query:   601 SHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFXXXXX 660
             SHIFEAIG++IG+EDVP EKQSDYLS LLTPLCQQ++  L+ AK+ + E+   K      
Sbjct:   600 SHIFEAIGIIIGLEDVPAEKQSDYLSLLLTPLCQQIEAGLVQAKVASSEDFPVKIANIQF 659

Query:   661 XXXXXXXLSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMV 720
                    LSKGFNERLVT+SRP IGLMFKQTLDVLL++L+ FPKVEPLR KVTSFIHRMV
Sbjct:   660 AIVAINALSKGFNERLVTASRPGIGLMFKQTLDVLLRVLIEFPKVEPLRSKVTSFIHRMV 719

Query:   721 DTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRI 780
             DTLG++VFPYLPKALEQLLA+SEPKEM GF+VLLNQLICKFN+ +HDIL+EV+P +A RI
Sbjct:   720 DTLGSAVFPYLPKALEQLLADSEPKEMVGFMVLLNQLICKFNSALHDILEEVYPVVAVRI 779

Query:   781 FNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQ 840
             FN+IPRD  PS PG  TEE+RE+ ELQR LYTFLHVIATHDLSSVFL+PKSR YLDP+MQ
Sbjct:   780 FNVIPRDGLPSRPGAVTEEMRELIELQRMLYTFLHVIATHDLSSVFLTPKSRAYLDPMMQ 839

Query:   841 LLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVL 900
             L+L TSCNHKD  VRKACVQIFI+LIKDWCA P+ EEKVPGFQ+F+IEAFA NCCLYSVL
Sbjct:   840 LVLNTSCNHKDITVRKACVQIFIKLIKDWCAEPYSEEKVPGFQNFVIEAFATNCCLYSVL 899

Query:   901 DKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQ 960
             DKSF F DANT  LFGEI+ AQKVMYEKFGN FL+H ++K FPSAH P DLAEQYCQKLQ
Sbjct:   900 DKSFNFSDANTHALFGEIITAQKVMYEKFGNTFLMHLMSKSFPSAHIPQDLAEQYCQKLQ 959

Query:   961 GNDIKALKSFYQSLIEKLRVQQNGSLVFR 989
             GNDI++LKS+YQSLIE LR+QQNGS VFR
Sbjct:   960 GNDIRSLKSYYQSLIENLRLQQNGSHVFR 988
GO:0000049 "tRNA binding" evidence=ISS
GO:0005643 "nuclear pore" evidence=IDA
GO:0006409 "tRNA export from nucleus" evidence=IGI;ISS
GO:0009908 "flower development" evidence=IMP
GO:0010014 "meristem initiation" evidence=IMP
GO:0015932 "nucleobase-containing compound transmembrane transporter activity" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0006406 "mRNA export from nucleus" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
MGI|MGI:1920442 Xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O43592 XPOT "Exportin-T" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9P2A6 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R4G4 XPOT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041210-4 xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C593 XPOT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1B8Q8 E1B8Q8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283119 xpot "exportin, tRNA" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1305562 Xpot "exportin, tRNA (nuclear export receptor for tRNAs)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7PC79XPOT_ARATHNo assigned EC number0.75120.99891.0yesno
Q8H3A7XPOT_ORYSJNo assigned EC number0.5260.97970.9887yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 1e-32
COG51011053 COG5101, CRM1, Importin beta-related nuclear trans 1e-05
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information 
 Score =  123 bits (311), Expect = 1e-32
 Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 7/153 (4%)

Query: 107 PAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMVIDMFCRVLNSLDDELISLD 166
           P FIRNKLA  L  L   E+P  W + F D +  L+      ++  R+L  L +E+   D
Sbjct: 1   PKFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIF--D 58

Query: 167 YPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWID 226
           + RT        R+KD +R Q + QI+     I+    S+  E+ +  L C+  ++SWI 
Sbjct: 59  FSRTPLTQQRRNRLKDLLRSQ-MPQILELLLQILENSVSAHSELLSATLKCLGSWLSWIP 117

Query: 227 INLIANDAFIPLLFELILADGLPEQFRGAAVGC 259
           I LI ND  + LLF+L+         R AAV C
Sbjct: 118 IGLILNDPLLNLLFQLL----SDPDLREAAVEC 146

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147
>gnl|CDD|227432 COG5101, CRM1, Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 989
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 100.0
COG51011053 CRM1 Importin beta-related nuclear transport recep 100.0
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 100.0
KOG2081559 consensus Nuclear transport regulator [Intracellul 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG20201041 consensus Nuclear transport receptor CRM1/MSN5 (im 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.97
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.96
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.88
KOG14101082 consensus Nuclear transport receptor RanBP16 (impo 99.85
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.85
COG5656970 SXM1 Importin, protein involved in nuclear import 99.8
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 99.79
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.77
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.73
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.66
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.25
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.15
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.01
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.93
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.91
KOG1824 1233 consensus TATA-binding protein-interacting protein 98.32
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.27
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.77
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 97.66
KOG1242569 consensus Protein containing adaptin N-terminal re 97.64
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 97.58
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 97.54
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.4
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 97.22
KOG1242569 consensus Protein containing adaptin N-terminal re 97.01
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.87
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.68
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.65
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.57
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.49
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.08
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.01
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.04
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.95
PTZ00429746 beta-adaptin; Provisional 94.81
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 94.54
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 94.38
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.28
KOG2956516 consensus CLIP-associating protein [General functi 93.77
PF05804708 KAP: Kinesin-associated protein (KAP) 93.37
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 93.22
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 92.81
PRK09687280 putative lyase; Provisional 92.28
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 92.06
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 91.91
PTZ00429746 beta-adaptin; Provisional 91.86
KOG4541748 consensus Nuclear transport receptor exportin 4 (i 91.5
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 90.7
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 90.43
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 89.68
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 89.64
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 89.19
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 88.48
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 88.4
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 88.25
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 87.92
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 87.86
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 87.84
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 87.69
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 87.6
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 87.47
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 87.06
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 85.94
KOG1967 1030 consensus DNA repair/transcription protein Mms19 [ 85.34
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 83.8
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 83.75
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 82.37
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 82.29
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 82.07
KOG0212675 consensus Uncharacterized conserved protein [Funct 81.99
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 81.83
PRK09687280 putative lyase; Provisional 81.6
KOG2956516 consensus CLIP-associating protein [General functi 80.7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5e-128  Score=1033.75  Aligned_cols=958  Identities=36%  Similarity=0.563  Sum_probs=864.5

Q ss_pred             ChHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC-CchHHHHHHHHHHHHHHhhhcCCCCHHHH
Q 001968            1 MDDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLC-NIVQVQFWCLQTLSEVVRVKYTSMSSEER   79 (989)
Q Consensus         1 m~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~-~~~~vr~fa~~~L~~~I~~~w~~l~~~~~   79 (989)
                      ||+++|||.++++|+  .|++.|+||-+|++++|.+|++|++|.+++... .++.+||||+|||.++++..+++++..+.
T Consensus         2 mddiEqav~a~ndp~--vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~el   79 (980)
T KOG2021|consen    2 MDDIEQAVNAVNDPR--VDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNEL   79 (980)
T ss_pred             chHHHHHHHhhCCCc--ccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHH
Confidence            899999999999995  799999999999999999999999999999876 56899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCCchh--HHHHHHHHHH
Q 001968           80 NLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKGSMV--IDMFCRVLNS  157 (989)
Q Consensus        80 ~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~~~~--~~~~L~iL~~  157 (989)
                      +.+|.++++|+.....++++    ...|.||+||++++++.++..+||+.|++||.|+...+..++..  .++++++|..
T Consensus        80 qlvR~sv~swlk~qvl~ne~----~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla  155 (980)
T KOG2021|consen   80 QLVRFSVTSWLKFQVLGNEQ----TKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA  155 (980)
T ss_pred             HHHHHHHHHHHHHHHhCccc----CCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence            99999999999876443211    35799999999999999999999999999999999999887755  9999999999


Q ss_pred             HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CHHHHHHHHHHhhccccccccccccccccH
Q 001968          158 LDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI  236 (989)
Q Consensus       158 l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~-~~~l~~~~L~~l~~~i~wi~~~~~~~~~~l  236 (989)
                      |..|+++.++.|+++...|++.+||+||++|+|++.+.|++++..|++. ++++...||+|+++|++|||+++++|+.++
T Consensus       156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~  235 (980)
T KOG2021|consen  156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL  235 (980)
T ss_pred             hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence            9999999999999999999999999999999999999999999998766 999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhh-hhhhhcc--ccCCcchHHHHHHHHHHHHHHHHHH
Q 001968          237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQ-ISRVFGL--VSEDGESELVSKVAALLTGYAMEVL  313 (989)
Q Consensus       237 ~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~-l~~~~~~--~~~~~d~~~~~~~~~l~~~~~~~~~  313 (989)
                      +++++++.    .+++|.+|++|+.+|++|+|+|-+|+.+++.|+ ..+++..  ..+.+|.++.++++++++++|.|+.
T Consensus       236 nLLy~fl~----ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~  311 (980)
T KOG2021|consen  236 NLLYKFLN----IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELT  311 (980)
T ss_pred             HHHHHHHh----HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeee
Confidence            99999996    699999999999999999999999999998873 3333322  2445899999999999999999999


Q ss_pred             HHHhhccch-h--hHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHc
Q 001968          314 DCVKRLNAE-N--ANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQI  390 (989)
Q Consensus       314 ~~~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~  390 (989)
                      .++..++++ +  .++.+...+...+|.+++++.|++++.++.+++||++|+..+|+.+.+.+..+..+.+++.++++|+
T Consensus       312 ~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqi  391 (980)
T KOG2021|consen  312 IIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQI  391 (980)
T ss_pred             hhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHH
Confidence            888766433 2  1233444555688999999999988888899999999999999887777888889999999999999


Q ss_pred             ccCcccccccccccc-CChhHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHh
Q 001968          391 RYDPMYRNNLDVLDK-IGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYAL  469 (989)
Q Consensus       391 ~~p~~~~~~~~~~~~-~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i  469 (989)
                      +|++.+..    .|+ .++|||+.|.++|+++..+++.+..++|+..+..|.+.+..++.+.+...|+.+|+|+|.++.+
T Consensus       392 cydemy~n----ddn~tg~EeEa~f~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~l  467 (980)
T KOG2021|consen  392 CYDEMYFN----DDNVTGDEEEAFFEEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNL  467 (980)
T ss_pred             hccHHhhc----ccCCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            99998753    233 4567899999999999999999999999999999999999999888889999999999999999


Q ss_pred             cccCchhhhhcc------cccHHHHHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhcccCCCCC
Q 001968          470 GESMSEEAMRTG------AGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLDERGIHHP  543 (989)
Q Consensus       470 ~e~~~~~~~~~~------~~~l~~ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~~~~l~~~  543 (989)
                      ||+++.+.....      .+++.+++.+++.+.++.++|+.|++.|+|+++||..|+...++++|.++++++++||+|+.
T Consensus       468 gE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~  547 (980)
T KOG2021|consen  468 GECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNK  547 (980)
T ss_pred             hhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhcccc
Confidence            999998754322      24666888888889999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhcccc-CCcccccCCCCcchhHHHHHHHHHHccCCCChhhHH
Q 001968          544 NVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTS-MNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQS  622 (989)
Q Consensus       544 ~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~-~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~  622 (989)
                      +.+||.||+|+|.||+|..++.+.||++.+++.+++++....+ +...+....+.++++++||++|.+|+....|+|++.
T Consensus       548 ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qa  627 (980)
T KOG2021|consen  548 NENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQA  627 (980)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHH
Confidence            9999999999999999999999999999999999999953321 111223445678999999999999999888999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchHHHHHHHHHHHHHHhhcC
Q 001968          623 DYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVF  702 (989)
Q Consensus       623 ~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  702 (989)
                      .|...++.|++.+..-........++++.+..++.++++++++|+++|||....++.+++.+..+|.++.++++.++..+
T Consensus       628 ay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f  707 (980)
T KOG2021|consen  628 AYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFF  707 (980)
T ss_pred             HHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhc
Confidence            99999999999887665554443345556777889999999999999999988888888889999999999999999999


Q ss_pred             CCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHh
Q 001968          703 PKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAIAGRIFN  782 (989)
Q Consensus       703 ~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~~~~l~~~~~~l~~~~~~  782 (989)
                      +..+.+|.+++.++|||+.++|++++||+|.+++.++.+.+.+++.+|+.+++|++++|+.++.+++.+++++++.++|.
T Consensus       708 ~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfs  787 (980)
T KOG2021|consen  708 NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFS  787 (980)
T ss_pred             cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHhhcCCCChhhhhHHHHHH
Q 001968          783 IIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIF  862 (989)
Q Consensus       783 ~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~~~~~~~~~~~k~a~~~l  862 (989)
                      .|...+.    +.+++...+.-++|++|++|+.++..+++++++.+..++.++..++..+++++...+||..+|++....
T Consensus       788 vi~r~a~----p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lc  863 (980)
T KOG2021|consen  788 VIERIAK----PIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLC  863 (980)
T ss_pred             HhcccCC----CCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHH
Confidence            9987533    345677789999999999999999999999999888888899999999999998889999999999999


Q ss_pred             HHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 001968          863 IRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGNDFLVHFVTKGF  942 (989)
Q Consensus       863 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~~~~~~~~~l~~~~~~~~  942 (989)
                      +.++..|++.    ++-.||+.|.+..+++.+|+..++.+.||++||+...+++|++.++|.+..++|++++.++.+.+|
T Consensus       864 nk~v~lwggk----dg~~gf~dfvlk~~~ln~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~i~ek~gnecv~yL~q~yl  939 (980)
T KOG2021|consen  864 NKIVCLWGGK----DGDNGFKDFVLKIDGLNKCFPIPLEIPFNIKDGNTKTMLGELARLLKEIFEKSGNECVKYLTQIYL  939 (980)
T ss_pred             HHHHHhcCCc----CCccccccceeecccccceeeecccCCcccccchHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence            9999999875    455679999999988878999999999999999999999999999999999999999999888999


Q ss_pred             CCCCCCHHHHHHHHHHhccCChhHHHH-HHHHHHHHHHh
Q 001968          943 PSAHCPPDLAEQYCQKLQGNDIKALKS-FYQSLIEKLRV  980 (989)
Q Consensus       943 P~~~~~~~~~~~f~~~l~~~~~~~f~~-~~~~f~~~~r~  980 (989)
                      |+.++|++.+.+|||.|.+-|.|.||+ +++.|+..+|.
T Consensus       940 Ps~q~pqela~qycqaLq~~d~k~Fk~~f~~~fis~lkp  978 (980)
T KOG2021|consen  940 PSIQLPQELAIQYCQALQTMDQKQFKKWFVDNFISVLKP  978 (980)
T ss_pred             ccccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999 99999998774

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
3ibv_A980 Karyopherin Cytosolic State Length = 980 2e-71
3a6p_A 1204 Crystal Structure Of Exportin-5:rangtp:pre-Mirna Co 3e-07
4hb4_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 1e-04
4hax_C1023 Crystal Structure Of Crm1 Inhibitor Ratjadone A In 2e-04
3m1i_C1049 Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex 5e-04
4gpt_C1060 Crystal Structure Of Kpt251 In Complex With Crm1-ra 5e-04
3vyc_A1033 Crystal Structure Of Unliganded Saccharomyces Cerev 5e-04
4hb2_C1023 Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 5e-04
4hb3_C1023 Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked 6e-04
4hay_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 6e-04
4haw_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 6e-04
4haz_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 7e-04
4hb0_C1023 Crystal Structure Of Crm1 Inhibitor Leptomycin B In 7e-04
>pdb|3IBV|A Chain A, Karyopherin Cytosolic State Length = 980 Back     alignment and structure 
Iteration: 1

 Score =  267 bits (682), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 249/1009 (24%), Positives = 468/1009 (46%), Gaps = 71/1009 (7%)
Query: 3   DLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIVQ--VQFWCL 60
           D+E A+  + D S  +  ++K QA +F   ++ + +  +IC E  S     +   +  CL
Sbjct: 7   DVENAVEAALDPS--VGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICL 64
Query: 61  QTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVT 120
           QTLSE VR      +  E  +IR+SV+S +          +  L+ PA+I N +  +L  
Sbjct: 65  QTLSEKVREWNNESNLLELQMIRDSVWSYI--------KELSFLDEPAYISNAVQHLLTL 116
Query: 121 LIYFEYPLIWSSVFVDFLPQLNKGSM--VIDMFCRVLNSLDDELISLDYPRTADELTVAA 178
           L    YP  W+  F      +   S     + + +VL S+ DE+      +T  ++    
Sbjct: 117 LFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDN 176
Query: 179 RIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGV-LDCMRRYISWIDINLIANDAFIP 237
            +KDA+R   +  IV   Y+++  Y ++      G+ L    +++SWI+INLI N+  + 
Sbjct: 177 LVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMN 236
Query: 238 LLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDG-ESE 296
           LL+  +      E+ R AA   +  +V+K+M P  KLNLL  L ++  F    E   +  
Sbjct: 237 LLYSFLQI----EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292
Query: 297 LVSKVAALLTGYAMEVLDCVK----RLNAENANEASKKLLNEVLPSVFYVMQNCEVDTTF 352
               VA L+    +E++  +K     L+ E     S +L N + P +   + +   +T+ 
Sbjct: 293 FDEHVAKLINAQGVELV-AIKSDPSELSPELKENCSFQLYN-LFPYLIRYLSDDYDETST 350
Query: 353 SIVQFLSGYVATMKSLSPLKE---EQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIE 409
           ++  FLS  + +++  S  KE     +     +LE I+ +++YD     +    D    E
Sbjct: 351 AVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD----DDPDSE 406
Query: 410 EEDRMVEYRKDLLVLLRSVGRVAPEVTQVF----IRNSLANAVTFSADRNVEEVEAALTL 465
           EE    E RK L +   ++  +   +   +    I +SL+ A T S + + + +E AL  
Sbjct: 407 EEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYE 466
Query: 466 LYALGESMSE-----EAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFI 520
            Y  GE +         +      LS+++ ++  +++  H + LV L+Y+E + RY  F 
Sbjct: 467 TYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFF 526
Query: 521 QEHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD- 579
              +  IP ++  F+  RGIH+ N  V  RA YLF R VK +K ++V + E+ L  L D 
Sbjct: 527 DYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDL 586
Query: 580 ---TIARFTSMNYASKELSGSEDGS------HIFEAIGLLIGMEDVPPEKQSDYLSSLLT 630
              +++  T M+     L+ S   S      ++FE +G+LI   ++ PE+Q+ Y  SL+ 
Sbjct: 587 LNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLIN 646
Query: 631 PLCQQVQTMLLDAKMLNPEESTAKFXXXXXXXXXXXXLSKGFNERLVTSSRPAIGLMFKQ 690
            L  +      +A + +   +                 +KGF  R   S   A    F +
Sbjct: 647 ALIGKA-----NAALSSDLSALENIISVYCSLMAIGNFAKGFPAR--GSEEVAWLASFNK 699
Query: 691 TLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGF 750
             D +  IL      E +R  V     R+++ +G  + P +P+ +  LL   +  E+   
Sbjct: 700 ASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDV 759
Query: 751 LVLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTL 810
           L  ++QLI  +   + +I + + P +  RIF+ +   A P G    T++  +  +L+++ 
Sbjct: 760 LSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSL--SAAPQG----TDDAVKQNDLRKSY 813
Query: 811 YTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWC 870
            +F+  +      S+  + +++ Y DP++  +L+ +    +   +K+ + +  +++  W 
Sbjct: 814 ISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWG 873
Query: 871 ARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFG 930
            +    + + GF++F +    +  C    ++ +F   D  +LV+ GE+   QK++ EK G
Sbjct: 874 GK----DGIAGFENFTLSLTPL--CFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG 927
Query: 931 NDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLR 979
           + +  + VT  FP+ + P  +A +Y Q L   D ++ K F+Q  I+ L+
Sbjct: 928 DIYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRSFKQFFQKFIQALK 976
>pdb|3A6P|A Chain A, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex Length = 1204 Back     alignment and structure
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(537dltvk541/glceq)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex With Crm1(k579a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 1049 Back     alignment and structure
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With Crm1-ran-ranbp1 Length = 1060 Back     alignment and structure
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae Crm1 (Xpo1p) Length = 1033 Back     alignment and structure
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In Excess Crm1 Inhibitor Leptomycin B Length = 1023 Back     alignment and structure
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k548a)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In Complex With Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1 Length = 1023 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query989
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 0.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 1e-88
2x19_B963 Importin-13; nuclear transport, protein transport; 3e-75
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 1e-69
2x1g_F971 Cadmus; transport protein, developmental protein, 7e-64
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 1e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 1e-12
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 2e-06
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
 Score =  576 bits (1486), Expect = 0.0
 Identities = 238/1010 (23%), Positives = 454/1010 (44%), Gaps = 67/1010 (6%)

Query: 2   DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCNIV--QVQFWC 59
            D+E A+  + D S     ++K QA +F   ++ + +  +IC E  S         +  C
Sbjct: 6   QDVENAVEAALDPSV--GPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLIC 63

Query: 60  LQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLV 119
           LQTLSE VR      +  E  +IR+SV+S +          +  L+ PA+I N +  +L 
Sbjct: 64  LQTLSEKVREWNNESNLLELQMIRDSVWSYI--------KELSFLDEPAYISNAVQHLLT 115

Query: 120 TLIYFEYPLIWSSVFVDFLPQLNKGSM--VIDMFCRVLNSLDDELISLDYPRTADELTVA 177
            L    YP  W+  F      +   S     + + +VL S+ DE+      +T  ++   
Sbjct: 116 LLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKD 175

Query: 178 ARIKDAMRQQCVEQIVRAWYDIVSMYRSS-DFEVCTGVLDCMRRYISWIDINLIANDAFI 236
             +KDA+R   +  IV   Y+++  Y ++ ++      L    +++SWI+INLI N+  +
Sbjct: 176 NLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCM 235

Query: 237 PLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFG-LVSEDGES 295
            LL+  +      E+ R AA   +  +V+K+M P  KLNLL  L ++  F     +  + 
Sbjct: 236 NLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDP 291

Query: 296 ELVSKVAALLTGYAMEVLDCVKRLNAENA--NEASKKLLNEVLPSVFYVMQNCEVDTTFS 353
                VA L+    +E++      +  +    E     L  + P +   + +   +T+ +
Sbjct: 292 NFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTA 351

Query: 354 IVQFLSGYVATMKSLS---PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEE 410
           +  FLS  + +++  S    L    +     +LE I+ +++YD     + +  D    EE
Sbjct: 352 VFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDE----SQEWDDDPDSEE 407

Query: 411 EDRMVEYRKDLLVLLRSVGRVAPEVTQVFIR----NSLANAVTFSADRNVEEVEAALTLL 466
           E    E RK L +   ++  +   +   ++     +SL+ A T S + + + +E AL   
Sbjct: 408 EAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYET 467

Query: 467 YALGESMS-----EEAMRTGAGHLSELVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQ 521
           Y  GE +         +      LS+++ ++  +++  H + LV L+Y+E + RY  F  
Sbjct: 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFD 527

Query: 522 EHTQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQD-- 579
             +  IP ++  F+  RGIH+ N  V  RA YLF R VK +K ++V + E+ L  L D  
Sbjct: 528 YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLL 587

Query: 580 --------TIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTP 631
                    +        +S   S      ++FE +G+LI   ++ PE+Q+ Y  SL+  
Sbjct: 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINA 647

Query: 632 LCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIGLMFKQT 691
           L  +    L          +     ++   +MAI   +KGF  R   S   A    F + 
Sbjct: 648 LIGKANAALSSDL-----SALENIISVYCSLMAIGNFAKGFPAR--GSEEVAWLASFNKA 700

Query: 692 LDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFL 751
            D +  IL      E +R  V     R+++ +G  + P +P+ +  LL   +  E+   L
Sbjct: 701 SDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVL 760

Query: 752 VLLNQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLY 811
             ++QLI  +   + +I + + P +  RIF+ +            T++  +  +L+++  
Sbjct: 761 SFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSA------APQGTDDAVKQNDLRKSYI 814

Query: 812 TFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCA 871
           +F+  +      S+  + +++ Y DP++  +L+ +    +   +K+ + +  +++  W  
Sbjct: 815 SFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGG 874

Query: 872 RPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVMYEKFGN 931
               ++ + GF++F +       C    ++ +F   D  +LV+ GE+   QK++ EK G+
Sbjct: 875 ----KDGIAGFENFTLS--LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGD 928

Query: 932 DFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQ 981
            +  + VT  FP+ + P  +A +Y Q L   D ++ K F+Q  I+ L+  
Sbjct: 929 IYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRSFKQFFQKFIQALKSG 978
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query989
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.91
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 99.85
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.79
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.74
1qgr_A876 Protein (importin beta subunit); transport recepto 99.66
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.54
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.25
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.23
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.11
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.2
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.16
2x1g_F 971 Cadmus; transport protein, developmental protein, 98.11
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 98.05
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.98
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.9
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.52
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.52
2x19_B963 Importin-13; nuclear transport, protein transport; 97.52
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.47
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 97.42
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.35
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.33
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.31
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 97.24
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.19
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.16
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.15
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.11
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.05
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 96.99
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.9
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.8
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.58
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 96.37
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.09
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.05
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.91
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 95.39
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.84
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.34
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 93.61
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 93.54
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.42
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 93.23
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 92.29
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 90.92
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 90.89
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 90.24
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 89.41
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 88.98
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 88.74
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 86.58
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 85.83
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 85.24
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 85.15
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 84.11
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 82.02
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 81.04
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
Probab=100.00  E-value=6.6e-120  Score=1121.80  Aligned_cols=937  Identities=25%  Similarity=0.427  Sum_probs=777.6

Q ss_pred             hHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCCchHHHHHHHhccCC--chHHHHHHHHHHHHHHhhhcCCCCHH--
Q 001968            2 DDLEKAILFSFDESGAIDSMLKSQAVNFCQQIKETPSICRICIEKLSLCN--IVQVQFWCLQTLSEVVRVKYTSMSSE--   77 (989)
Q Consensus         2 ~~l~~av~~~~~p~~~~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~~--~~~vr~fa~~~L~~~I~~~w~~l~~~--   77 (989)
                      +++++||+.+|+|+  +|++.|++|++||++||++|++|++|..+|..+.  ++++||||+++|+++|+    .++++  
T Consensus         6 ~~v~~Al~~~~~p~--sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~   79 (980)
T 3ibv_A            6 QDVENAVEAALDPS--VGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN   79 (980)
T ss_dssp             HHHHHHHHHHHCTT--SCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred             HHHHHHHHHHhCCC--CCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence            48999999999985  6999999999999999999999999999998764  68999999999999999    69999  


Q ss_pred             --HHHHHHHHHHHHHHhhhhcCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-c-hhHHHHHH
Q 001968           78 --ERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-S-MVIDMFCR  153 (989)
Q Consensus        78 --~~~~lr~~ll~~l~~~~~~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~-~~~~~~L~  153 (989)
                        ++..||+.|++++.+.   +     ...++++||||+|.+++.+++++||+.||++++++++.++++ . ...+.+|+
T Consensus        80 ~~~~~~lr~~ll~~l~~~---~-----~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~Lr  151 (980)
T 3ibv_A           80 LLELQMIRDSVWSYIKEL---S-----FLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLK  151 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHC---C-----STTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh---c-----CCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHH
Confidence              9999999999999873   1     124689999999999999999999999999999999999864 3 46778999


Q ss_pred             HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHhhccccccccccccc
Q 001968          154 VLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAWYDIVSMYR-SSDFEVCTGVLDCMRRYISWIDINLIAN  232 (989)
Q Consensus       154 iL~~l~Eev~~~~~~~~~~~~~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~-~~~~~l~~~~L~~l~~~i~wi~~~~~~~  232 (989)
                      +|..|+||+.+.+++++++...|++.+|+.|+++|++.|++.|..+|..+. +.+++++..+|+|+++|++|+|++.+.+
T Consensus       152 iL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~  231 (980)
T 3ibv_A          152 VLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVN  231 (980)
T ss_dssp             HHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC
T ss_pred             HHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc
Confidence            999999999887777888888999999999999889999999999998764 3678899999999999999999999999


Q ss_pred             cccHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCCCcchhhhHhhhhhhhhhhccccC-CcchHHHHHHHHHHHHHHHH
Q 001968          233 DAFIPLLFELILADGLPEQFRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSE-DGESELVSKVAALLTGYAME  311 (989)
Q Consensus       233 ~~~l~~l~~~l~~~~~~~~~~~~a~~~l~~i~~~~~~~~~k~~li~~l~l~~~~~~~~~-~~d~~~~~~~~~l~~~~~~~  311 (989)
                      +++++.+++++.    ++++|.+|++||++|++++++|++|.+++..+++.+++..+.. ++|.|+.+++|++++++|.+
T Consensus       232 ~~ll~~l~~~L~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~  307 (980)
T 3ibv_A          232 EPCMNLLYSFLQ----IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVE  307 (980)
T ss_dssp             HHHHHHHHHHTT----SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcC----ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            999999999875    6999999999999999999999999999998888888877653 68899999999999999999


Q ss_pred             HHHHHhhccc---hhhHHHHHHHHHHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccC---CCChHHHhHhHHHHHHH
Q 001968          312 VLDCVKRLNA---ENANEASKKLLNEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSL---SPLKEEQRLHAGQILEV  385 (989)
Q Consensus       312 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~ll~~  385 (989)
                      ++.. .....   ++....+.+++..++++++.+++|++.+.+..+++||.+|+..+++.   .++...+++++.+++++
T Consensus       308 l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~  386 (980)
T 3ibv_A          308 LVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEA  386 (980)
T ss_dssp             HHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence            8887 43210   12233455788899999999999987665557999999999887642   34667889999999999


Q ss_pred             HHHHcccCccccccccccccCChhHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHhhcCCCCCChhHHHH
Q 001968          386 ILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVGRVAPEVTQV----FIRNSLANAVTFSADRNVEEVEA  461 (989)
Q Consensus       386 l~~k~~~p~~~~~~~~~~~~~~~~~~~~f~~~R~~l~~~l~~i~~i~~~~~l~----~i~~~l~~~~~~~~~~~w~~~Ea  461 (989)
                      +++||+||++.+    |.+++|+||+++|.+||++++.+++.++.++|+.+++    ++.+.+.+.+++.++.+|+++||
T Consensus       387 li~k~~yp~d~~----~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~Ea  462 (980)
T 3ibv_A          387 IIKKMKYDESQE----WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEF  462 (980)
T ss_dssp             HHHTTSCCTTCC----CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHccCCCccc----cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH
Confidence            999999998864    3333345678899999999997777778889999999    77777777665334468999999


Q ss_pred             HHHHHHHhcccCchhhhh--cccccHHH---HHHHHHhCCCCCCCCchHHHHHHHHHHhhHhhhhhccCchHHHHHHhhc
Q 001968          462 ALTLLYALGESMSEEAMR--TGAGHLSE---LVPMLLQTKLPCHSNRLVALVYLETVTRYMKFIQEHTQYIPVVLAAFLD  536 (989)
Q Consensus       462 ~l~~l~~i~e~~~~~~~~--~~~~~l~~---ll~~ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~~~~L~~vl~~l~~  536 (989)
                      +||+++++||+++.....  ..+..+|+   ++..++.++++.++||.|+.++++++|||++|+..||++++++|+++++
T Consensus       463 aL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~  542 (980)
T 3ibv_A          463 ALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVG  542 (980)
T ss_dssp             HHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTS
T ss_pred             HHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhc
Confidence            999999999999864321  12234444   4444566678888999999999999999999999999999999999999


Q ss_pred             ccCCCCCCchhhhhHHHHHHHHHHHhhhcchhhHHHHHHHhHhhhhccccCCccc--------ccCC---CCcchhHHHH
Q 001968          537 ERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYAS--------KELS---GSEDGSHIFE  605 (989)
Q Consensus       537 ~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~--------~~~~---~~~~~~~l~e  605 (989)
                      ++|+++++++|+.+||++|.+||++|+++|.||+++|++.+.+++..... +...        +++.   ..++++++||
T Consensus       543 ~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ql~L~e  621 (980)
T 3ibv_A          543 PRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS-PVTDMDAPVPTLNSSIRNSDFNSQLYLFE  621 (980)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC-CCCC--CSSCCHHHHHHTTTHHHHHHHHH
T ss_pred             cccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC-CCCcccccccchhhhcccCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999975432 1110        0000   1246899999


Q ss_pred             HHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCchhhhHHHHHHHHHHHHhhhccCCCCCCcCCCcCchH
Q 001968          606 AIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINALSKGFNERLVTSSRPAIG  685 (989)
Q Consensus       606 ai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~i~~i~k~~~~~~~~~~~~~~~  685 (989)
                      |+|.+++..+.|++++..+++.++.|++++|+++++.....  +++ .  .+++|+++++|+++|||++... . ..++.
T Consensus       622 aig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~--~~~-~--~~i~~~i~al~~lakgf~~~~~-~-~~p~~  694 (980)
T 3ibv_A          622 TVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA--LEN-I--ISVYCSLMAIGNFAKGFPARGS-E-EVAWL  694 (980)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC----CH-H--HHHHHHHHHHHHHHHTSCSCC--C-CCSHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC--ccH-H--HHHHHHHHHHHHHhccCCcccC-C-CCcHH
Confidence            99999998766789999999999999999999998654321  111 2  2789999999999999986522 2 22378


Q ss_pred             HHHHHHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhHHHHHHHHHHHHHHHhhhhh
Q 001968          686 LMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLV  765 (989)
Q Consensus       686 ~~~~~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~~~~~L~l~~~li~~~~~~~  765 (989)
                      .+|.++|++++.+++.|+++..||+++|++|+||+.++|+++.|++|++++.++..++.+++.+||+++++++++||+++
T Consensus       695 ~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli~~f~~~~  774 (980)
T 3ibv_A          695 ASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLIHIYKDNM  774 (980)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCChHHHHHHHHHh
Q 001968          766 HDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGYLDPIMQLLLYT  845 (989)
Q Consensus       766 ~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~~~~il~~l~~~  845 (989)
                      .+.+++++.++++++|.++++.      +.++|.+|+..|++|+||.|+..+++++.+++|+++.|++.|+.++.+++++
T Consensus       775 ~~~l~~ll~~l~~~if~~l~~~------~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~  848 (980)
T 3ibv_A          775 MEITNRMLPTLLMRIFSSLSAA------PQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHF  848 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTC----------CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999873      3456899999999999999999999999999999998999999999999999


Q ss_pred             hcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHhHHHHHHHHHHH
Q 001968          846 SCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVLFGEIVLAQKVM  925 (989)
Q Consensus       846 ~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~~~ei~~~l~~~  925 (989)
                      +.+++|+.++|+|+.++.++++.|++.    .+.+||.+|+++ ++|. ||.+|++++||++||+++.+++|++.++|.+
T Consensus       849 a~~~~d~~~~K~a~~~l~~~v~~~~~~----~~~~gf~~f~~~-~~~~-~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~  922 (980)
T 3ibv_A          849 ANLVGEPATQKSSIALVSKMVSLWGGK----DGIAGFENFTLS-LTPL-CFEMPVNPNFNTRDGQSLVVLGELAGLQKII  922 (980)
T ss_dssp             C-----CHHHHHHHHHHHHHHHC-----------CCHHHHHHH-HHHH-HHHGGGC----------CHHHHHHHHHHHHH
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHCCC----CcchHHHHHHHH-HHHH-HHHhhcCCCCChhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999864    347999999999 8886 8999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHhccCChhHHHHHHHHHHHHHHhh
Q 001968          926 YEKFGNDFLVHFVTKGFPSAHCPPDLAEQYCQKLQGNDIKALKSFYQSLIEKLRVQ  981 (989)
Q Consensus       926 ~~~~~~~~l~~~~~~~~P~~~~~~~~~~~f~~~l~~~~~~~f~~~~~~f~~~~r~~  981 (989)
                      +.++|++|++++.+.+||++++|++.+++|+++|.+.|.|.||+|++.|+.++|++
T Consensus       923 ~~~~g~~~~~~l~~~~lp~~~~~~~~~~~~~~~l~~~~~k~f~~~~~~~~~~~~~~  978 (980)
T 3ibv_A          923 LEKLGDIYKSYLVTVYFPTVNFPDVMASEYLQALSNLDSRSFKQFFQKFIQALKSG  978 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTC----CCHHHHHHHC----------------CHHHHC-
T ss_pred             HHhcCHHHHHHHHHhcCCcCCCCHHHHHHHHHHHhccchhhHHHHHHHHHHHhhcC
Confidence            99999999998888999999999999999999997789999999999999999875
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 989
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 7e-09
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 3e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.002
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 7e-09
 Identities = 107/774 (13%), Positives = 236/774 (30%), Gaps = 102/774 (13%)

Query: 19  DSMLKSQAVNFCQQIKETPSICRICIEKLSLC--NIVQVQFWCLQTLSEVVRVKYTSMSS 76
           D+ ++       +Q+ + P      I  L+         +      L   V+  + +  +
Sbjct: 24  DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPN 83

Query: 77  EERNLIRESVFSMVCCELVDGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVD 136
              + I+    + +              +S   IR  +  ++ T+        W     D
Sbjct: 84  GVTDFIKSECLNNI-------------GDSSPLIRATVGILITTIASKGELQNWP----D 126

Query: 137 FLPQLNKGSMVIDMFCRVLNSLDDELISLDYPRTADELTVAARIKDAMRQQCVEQIVRAW 196
            LP+L          C +L+S D                   +I +   +     ++   
Sbjct: 127 LLPKL----------CSLLDSEDYNTCEG-------AFGALQKICEDSAEILDSDVLDRP 169

Query: 197 YD-----IVSMYRSSDFEVCTGVLDCMRRYISWIDINLIANDAFIPLLFELILADGLPEQ 251
            +      +  ++ S  ++ +  + C+ ++I      L+ +          +  D  PE 
Sbjct: 170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEV 229

Query: 252 FRGAAVGCVLAVVSKRMDPQSKLNLLQTLQISRVFGLVSEDGESELVSKVAALLTGYAME 311
            +      V       ++ +    L     I       ++D +  +  +        A +
Sbjct: 230 RKNVCRALV-----MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQ 284

Query: 312 VLDCVKRLNAENANEASKKLLNEVLPSVFYVMQNCEVD--TTFSIVQFLSGYVATMKSLS 369
                         +   + L +++P +   M+  ++D       V+       + + + 
Sbjct: 285 ----------PICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 370 PLKEEQRLHAGQILEVILTQIRYDPMYRNNLDVLDKIGIEEEDRMVEYRKDLLVLLRSVG 429
           P     R  A Q  E  +             D  D+I  ++       RK     L  + 
Sbjct: 335 PRFHRSRTVAQQHDEDGIE---------EEDDDDDEIDDDDTISDWNLRKCSAAALDVLA 385

Query: 430 RVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELV 489
            V  +     I   L   +        E              +++E  M+    +L EL+
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILV-------LGAIAEGCMQGMIPYLPELI 438

Query: 490 PMLLQTKLPCHSNRLVALVYLETVTRYMKFI--QEHTQYIPVVLAAFLDERGIHHPNVHV 547
           P L+Q         LV  +   T++RY  ++  Q    Y+  ++   L    I   N  V
Sbjct: 439 PHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK--RILDSNKRV 494

Query: 548 SRRASYLFMRVVKLLKAKLVPFIENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAI 607
              A   F  + +    +LVP++  IL +L    +++   N              +++AI
Sbjct: 495 QEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNL-----------LILYDAI 543

Query: 608 GLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPEESTAKFANIQQIIMAINA 667
           G L          + +Y+  L+ PL Q+   +  + K L P         +  +  A+ +
Sbjct: 544 GTLADS-VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP-----LLECLSSVATALQS 597

Query: 668 LSKGFNERLVTSSRPAIGLMFKQTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASV 727
               + E +       +     Q +    Q        +         +  + + LG ++
Sbjct: 598 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI 657

Query: 728 FPY-----LPKALEQLLAESEPKEMAGFLVLLNQLICKFNTLVHDILDEVFPAI 776
                   +   + Q + +  P+       LL  L       V   + +  P +
Sbjct: 658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 711
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query989
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.98
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.96
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 99.8
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.43
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.23
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.05
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.01
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.99
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.85
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.82
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.13
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 97.85
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.73
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 96.49
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.42
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 95.71
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.22
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.87
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 92.92
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 90.36
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 89.86
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-37  Score=384.68  Aligned_cols=798  Identities=14%  Similarity=0.181  Sum_probs=472.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCchHHHHHHHhccC--CchHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 001968           18 IDSMLKSQAVNFCQQIKETPSICRICIEKLSLC--NIVQVQFWCLQTLSEVVRVKYTSMSSEERNLIRESVFSMVCCELV   95 (989)
Q Consensus        18 ~~~~~r~~A~~~L~~~q~~~~~w~~~~~lL~~~--~~~~vr~fa~~~L~~~I~~~w~~l~~~~~~~lr~~ll~~l~~~~~   95 (989)
                      +|++.|++|+++|++++++|+.|.++..++...  .+..+|++|+.+||+.|+++|..++++.+..||+.++..+..   
T Consensus        23 ~d~~~r~~A~~~L~~~~~~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~~---   99 (888)
T d1qbkb_          23 PDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGD---   99 (888)
T ss_dssp             HHHHHHHHHTTSTTTSTTSTTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGGC---
T ss_pred             CCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHcC---
Confidence            378999999999999999999999988888753  346799999999999999999999999999999999876542   


Q ss_pred             cCCCcccCCCChHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHhhcCC-chhHHHHHHHHHHHHHHHhhccCCCChhHH
Q 001968           96 DGKSSMRVLESPAFIRNKLAQVLVTLIYFEYPLIWSSVFVDFLPQLNKG-SMVIDMFCRVLNSLDDELISLDYPRTADEL  174 (989)
Q Consensus        96 ~~~~~~~~~~~~~~v~~kl~~~la~l~~~~~p~~Wp~~~~~l~~~~~~~-~~~~~~~L~iL~~l~Eev~~~~~~~~~~~~  174 (989)
                                .++.||++++.+++.|+.+++|+.||++++.+.+.+.++ +...+..+.+|..|+|+...... .     
T Consensus       100 ----------~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~-~-----  163 (888)
T d1qbkb_         100 ----------SSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD-S-----  163 (888)
T ss_dssp             ----------CCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHH-T-----
T ss_pred             ----------CCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhh-H-----
Confidence                      356789999999999999999999999999999988654 34455567777888887632100 0     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhccccccccccccc-cccHHHHHHHHHhcCCChhHH
Q 001968          175 TVAARIKDAMRQQCVEQIVRAWYDIVSMYRSSDFEVCTGVLDCMRRYISWIDINLIAN-DAFIPLLFELILADGLPEQFR  253 (989)
Q Consensus       175 ~r~~~l~~~l~~~~~~~i~~~~~~iL~~~~~~~~~l~~~~L~~l~~~i~wi~~~~~~~-~~~l~~l~~~l~~~~~~~~~~  253 (989)
                             +.... ..+.++..+.+.+   .+.++.++..+++|+..++...+-..... +.+++.++..+.  .+++++|
T Consensus       164 -------~~~~~-~~~~ll~~ll~~~---~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~vr  230 (888)
T d1qbkb_         164 -------DVLDR-PLNIMIPKFLQFF---KHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAG--DEEPEVR  230 (888)
T ss_dssp             -------C---C-CSTTTTHHHHTGG---GSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSS--CCCSSST
T ss_pred             -------HHHHH-HHHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcC--CcchHHH
Confidence                   00111 1222332222222   34456677788889988876544222111 345555555443  3578899


Q ss_pred             hHHHHHHHHHHhcCCCcchhhh-HhhhhhhhhhhccccCCcchHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q 001968          254 GAAVGCVLAVVSKRMDPQSKLN-LLQTLQISRVFGLVSEDGESELVSKVAALLTGYAMEVLDCVKRLNAENANEASKKLL  332 (989)
Q Consensus       254 ~~a~~~l~~i~~~~~~~~~k~~-li~~l~l~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (989)
                      ..+++||..++....+   ++. .+.  ++.+.+-....++|++.....++++.+++.+    .  .....    ..+.+
T Consensus       231 ~~~~~~l~~l~~~~~~---~l~~~l~--~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~----~--~~~~~----~~~~l  295 (888)
T d1qbkb_         231 KNVCRALVMLLEVRMD---RLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQ----P--ICKDV----LVRHL  295 (888)
T ss_dssp             THHHHTTTTTSCSCTT---TTTTTTT--TTTTTTTTTTTSSCHHHHHHHHHHHCCCCSG----G--GGTTT----TTTST
T ss_pred             HHHHHHHHHHHHHhHH---HHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh----h--hhHHH----HHHHH
Confidence            9999999887754321   111 111  1111111123345555544444432222111    0  00000    00123


Q ss_pred             HHHHHHHHHHhhcCcccchhcHHHHHHHHHHHhccCCCChHHHhHhHHHHHHHHHHHcccCccc-cccccccccCChhHH
Q 001968          333 NEVLPSVFYVMQNCEVDTTFSIVQFLSGYVATMKSLSPLKEEQRLHAGQILEVILTQIRYDPMY-RNNLDVLDKIGIEEE  411 (989)
Q Consensus       333 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~~~-~~~~~~~~~~~~~~~  411 (989)
                      ..++|.++..+.+.+.+.    ....    .................+.............++. ....+..++.++++.
T Consensus       296 ~~l~~~l~~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (888)
T d1qbkb_         296 PKLIPVLVNGMKYSDIDI----ILLK----GDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDT  367 (888)
T ss_dssp             TTTTTTTTTSSCCSSTTH----HHHT----TTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCST
T ss_pred             HHHHHHHHHHhhcchHHH----HHHh----hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhh
Confidence            344444333332222211    0000    0000000000000000000000000000000000 000000000000011


Q ss_pred             HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhcccCchhhhhcccccHHHHHHH
Q 001968          412 DRMVEYRKDLLVLLRSVGRVAPEVTQVFIRNSLANAVTFSADRNVEEVEAALTLLYALGESMSEEAMRTGAGHLSELVPM  491 (989)
Q Consensus       412 ~~f~~~R~~l~~~l~~i~~i~~~~~l~~i~~~l~~~~~~~~~~~w~~~Ea~l~~l~~i~e~~~~~~~~~~~~~l~~ll~~  491 (989)
                      ......|+....+++.++...++.+++.+.+.+...+.+   .+|+.+|+++++++++++++...    ....++++++.
T Consensus       368 ~~~~~~r~~a~~~L~~l~~~~~~~il~~~l~~l~~~l~s---~~~~~reaa~~alg~i~eg~~~~----~~~~l~~li~~  440 (888)
T d1qbkb_         368 ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH---HEWVVKESGILVLGAIAEGCMQG----MIPYLPELIPH  440 (888)
T ss_dssp             TSCCSSHHHHHHHSTTTTTTCCSSSHHHHHHHHHHTTTS---SSHHHHHHHHHHHHHHTTTSHHH----HTTTHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHhhhhhhhHHHH----hcccchhhhHH
Confidence            111246788888888877777777788888888876654   78999999999999999998654    24578888888


Q ss_pred             HHhCCCCCCCCchHHHHHHHHHHhhHhhhhhc--cCchHHHHHHhhcccCCCCCCchhhhhHHHHHHHHHHHhhhcchhh
Q 001968          492 LLQTKLPCHSNRLVALVYLETVTRYMKFIQEH--TQYIPVVLAAFLDERGIHHPNVHVSRRASYLFMRVVKLLKAKLVPF  569 (989)
Q Consensus       492 ll~~~~~~~~~~~v~~~~~~~lg~y~~~l~~~--~~~L~~vl~~l~~~~~l~~~~~~v~~~A~~al~~l~~~~~~~l~p~  569 (989)
                      ++.  ...+++|.|+...+.++|+|++|+...  ..++.++++.++.  ++.+++++|+.+||.+|..+++.+...+.||
T Consensus       441 l~~--~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~  516 (888)
T d1qbkb_         441 LIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLK--RILDSNKRVQEAACSAFATLEEEACTELVPY  516 (888)
T ss_dssp             HHH--HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHH--HHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG
T ss_pred             HHH--hccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            773  345788999644444899999998654  3577788888886  7777889999999999999999999999999


Q ss_pred             HHHHHHHhHhhhhccccCCcccccCCCCcchhHHHHHHHHHHccCCCChhhHHHHHHHhHHHHHHHHHHHHHhhhhcCCc
Q 001968          570 IENILQSLQDTIARFTSMNYASKELSGSEDGSHIFEAIGLLIGMEDVPPEKQSDYLSSLLTPLCQQVQTMLLDAKMLNPE  649 (989)
Q Consensus       570 ~~~il~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~eai~~li~~~~~~~~~~~~~l~~ll~pl~~~l~~~~~~~~~~~~~  649 (989)
                      ++.+++.+...+....           .+....+++++++++...+ +.-.+..++..++.++...|+......     .
T Consensus       517 ~~~il~~l~~~l~~~~-----------~~~~~~~~~al~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~  579 (888)
T d1qbkb_         517 LAYILDTLVFAFSKYQ-----------HKNLLILYDAIGTLADSVG-HHLNKPEYIQMLMPPLIQKWNMLKDED-----K  579 (888)
T ss_dssp             HHHHHHHHHHHTTTCC-----------HHHHHHHHHHHHHHHHHHG-GGGCSHHHHHHHHHHHHHHHTTSCTTC-----T
T ss_pred             HHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHHhhh-ccccchHHHHHHHHHHHHHHHhcccch-----H
Confidence            9999999988775321           1345678999999987644 333456788888888877664321100     0


Q ss_pred             hhhhHHHHHHHHHHHHhhhccCCCCCC-------------------------------cCCCcCchH-------------
Q 001968          650 ESTAKFANIQQIIMAINALSKGFNERL-------------------------------VTSSRPAIG-------------  685 (989)
Q Consensus       650 ~~~~~~~~i~~~l~~i~~i~k~~~~~~-------------------------------~~~~~~~~~-------------  685 (989)
                       ..      ..++.+++.++..++..+                               .......+.             
T Consensus       580 -~~------~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~  652 (888)
T d1qbkb_         580 -DL------FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEG  652 (888)
T ss_dssp             -TH------HHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHH
T ss_pred             -HH------HHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHH
Confidence             00      000111111111111000                               000000011             


Q ss_pred             ------HHHH--HHHHHHHHHhhcCCCChhHhHHHHHHHHHHHhhhcccccCchHHHHHHHHccCChhH---HHHHHHHH
Q 001968          686 ------LMFK--QTLDVLLQILVVFPKVEPLRCKVTSFIHRMVDTLGASVFPYLPKALEQLLAESEPKE---MAGFLVLL  754 (989)
Q Consensus       686 ------~~~~--~~~~~~~~~l~~~~~~~~i~e~~~~~~~~~~~~l~~~~~p~l~~l~~~ll~~~~~~~---~~~~L~l~  754 (989)
                            ++..  .+++++...++  ..+..+|+.+..+++.++...+..+.||++.+++.++...+...   ....++.+
T Consensus       653 l~~~~~~~~~~~~l~~~l~~~l~--~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~i  730 (888)
T d1qbkb_         653 LGGNIEQLVARSNILTLMYQCMQ--DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAI  730 (888)
T ss_dssp             HTTTTHHHHHTSCHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHhhHHHHHHHHhC--CCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence                  1110  12222333332  34578999999999999999999999999999999998875432   24567889


Q ss_pred             HHHHHHhhhhhHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCcCC
Q 001968          755 NQLICKFNTLVHDILDEVFPAIAGRIFNIIPRDAFPSGPGTNTEEIREVQELQRTLYTFLHVIATHDLSSVFLSPKSRGY  834 (989)
Q Consensus       755 ~~li~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~pd~~~~~~~ll~~~~~~~~~~~~~s~~~~~~  834 (989)
                      |.++...|+++.|+++.+++.++    .+++...             ....++++....++++...++..+  .+    +
T Consensus       731 g~ia~~~~~~~~py~~~il~~L~----~il~~~~-------------~~~~v~~n~~~~lgrl~~~~p~~~--~~----~  787 (888)
T d1qbkb_         731 GEISIQMGIEMQPYIPMVLHQLV----EIINRPN-------------TPKTLLENTAITIGRLGYVCPQEV--AP----M  787 (888)
T ss_dssp             HHHHHHTGGGGGGGSHHHHHHHH----HHHTCTT-------------CCHHHHHHHHHHHHHHHHHCHHHH--GG----G
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHH----HHHcCCC-------------ccHHHHHHHHHHHHHHHHHCHHHH--Hh----h
Confidence            99999999999999887777665    4444321             123467778888899988876544  22    2


Q ss_pred             hHHHHHHHHHhhcCCCChhhhhHHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHhhhhhhhhhhccCCCCCcccchhhHh
Q 001968          835 LDPIMQLLLYTSCNHKDYLVRKACVQIFIRLIKDWCARPFVEEKVPGFQSFMIEAFAMNCCLYSVLDKSFEFGDANTLVL  914 (989)
Q Consensus       835 ~~~il~~l~~~~~~~~~~~~~k~a~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~d~~~~~~  914 (989)
                      ++.++..++.......|.+-++.|+..+..++..-.     ....+.+..|+ ..+..          ..+..    ..+
T Consensus       788 l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p-----~~~~~~l~~~~-~~i~~----------~~~~~----~~~  847 (888)
T d1qbkb_         788 LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP-----SGVIQDFIFFC-DAVAS----------WINPK----DDL  847 (888)
T ss_dssp             GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG-----GGTGGGHHHHH-HHHTT----------CSSCC----HHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc-----HHHHHHHHHHH-HHHHh----------cCCCC----HHH
Confidence            333333333233243455557789999999887421     12233332222 21111          01111    234


Q ss_pred             HHHHHHHHHHHHHHHhHH-HHHHHHHhcCCCCCCCHHHHHHHHH
Q 001968          915 FGEIVLAQKVMYEKFGND-FLVHFVTKGFPSAHCPPDLAEQYCQ  957 (989)
Q Consensus       915 ~~ei~~~l~~~~~~~~~~-~l~~~~~~~~P~~~~~~~~~~~f~~  957 (989)
                      -..+..++..+.+.+|++ |-+ +++ .||     ++.++..-+
T Consensus       848 ~~~~~~~l~~~~~~~~~~~w~~-~~~-~~~-----~~~~~~l~~  884 (888)
T d1qbkb_         848 RDMFCKILHGFKNQVGDENWRR-FSD-QFP-----LPLKERLAA  884 (888)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHH-HHH-SSC-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHhHHH-HHH-cCC-----HHHHHHHHH
Confidence            556666776666777765 543 322 344     777776543
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure